Citrus Sinensis ID: 011457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
Protein Sequence
MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccEEEEEEccccEEEEccccccccccccccccccccEEEEEEcccccEEEEEcccccEEEccccccccccEEEEEEEEccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccccEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEcccccccEEEEEEEccccEEEEEcccccEEEEEcccccEEEEEccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEcccccccEEEEEEEEcccccEEEEEccccEEEEEEEEcccccEEEcccccccHEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
mpgpamdlepvepqslkKLSLKSQKRALdlfspthgrlpppdpeskkirishklnleyggikstneprrqvnsttiahrnqpsgssdvlalpgpegsrdaqKAGAQNalvvgpsaqpkglnnvgasgksSAIVSTSassernlstsaimeripskwprpewhapwkcyRVISGHLGWVRSVafdhsntwfctgsadrtIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTymfsagddkqvkcwdleqnKVIRSYHghlsgvyclglhptidilltggrdsvcrVWDIRTKMQIFALaghdntvcsvftrptdpqvvtgshdstikfWDLRYGKTMLTLTHHKKSvramalhptedcfasasaenikkfnlpkgefLHNMLSQQKTIINSmavneegvlatggdngslwfwdwksghnfqqaqtivqpgsldseaGIYALSYdvtgsrlvtceADKTIKMWredetatpethplnfkppkdirrf
Flexible Loop (DISEMBL)
mpgpamdlepvepqSLKKLSLKSQKRALDlfspthgrlpppdpeskkirisHKLNleyggikstneprRQVNSTtiahrnqpsgssDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGASGKSSAIVStsassernlstsaimeripskwprpewhAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMfsagddkqvkCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFtrptdpqvvtgshdstikfWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSydvtgsrlvtCEADKTIKMwredetatpethplnfkppkdirrf
Low Complexity Region (SEG)
MPGPAMDLEPVEPQslkklslksQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGasgkssaivstsassERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF
Disordered region (IsUnstruct)
**********************************************************************************************************************************************************KWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW************************
Disordered Region (DISOPRED)
**********VEPQSLKKLSLKSQKRALDLFSPTHGRLPP**PESKKIRISHKLNLEYGGIKSTNEP***********************LPGPEG**DAQKAGAQNALVVGPSAQPKGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIR**
Disordered Region (DISEMBL)
**********VEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSSDVLALP*************QNALVVGPSAQPKGLNNV*********************TSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF
Disordered Region (DISPRO)
***************LKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	485	2.2.26 [Sep-21-2011]
Q42384	486	Protein pleiotropic regul	yes	no	0.989	0.987	0.763	0.0
Q39190	479	Protein pleiotropic regul	no	no	0.967	0.979	0.731	0.0
Q922V4	513	Pleiotropic regulator 1 O	yes	no	0.969	0.916	0.483	1e-131
Q9WUC8	514	Pleiotropic regulator 1 O	yes	no	0.969	0.914	0.488	1e-130
Q2KID6	513	Pleiotropic regulator 1 O	yes	no	0.962	0.910	0.472	1e-129
O43660	514	Pleiotropic regulator 1 O	yes	no	0.969	0.914	0.472	1e-129
O13615	473	Pre-mRNA-splicing factor	yes	no	0.931	0.955	0.485	1e-125
Q5BE22	452	Pre-mRNA-splicing factor	yes	no	0.740	0.794	0.563	1e-120
Q4WT34	453	Pre-mRNA-splicing factor	yes	no	0.767	0.821	0.540	1e-119
Q6C709	441	Pre-mRNA-splicing factor	yes	no	0.863	0.950	0.483	1e-113

>sp|Q42384|PRL1_ARATH Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/491 (76%), Positives = 428/491 (87%), Gaps = 11/491 (2%)

Query: 1   MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
           MP P  ++EP+E QSLKKLSLKS KR+L+LFSP HG+ PPPDPE+K+IR+SHK+ + +GG
Sbjct: 1   MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFPPPDPEAKQIRLSHKMKVAFGG 60

Query: 61  IKST-NEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPS----A 115
           ++   ++P RQ +       N+  G S+ L+L  PEGS+  QK   ++A+VVGP+     
Sbjct: 61  VEPVVSQPPRQPDRI-----NEQPGPSNALSLAAPEGSKSTQKGATESAIVVGPTLLRPI 115

Query: 116 QPKGLNNVGASGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGH 174
            PKGLN  G+SGKS+ I+  + SS +RNLST+A+MERIPS+WPRPEWHAPWK YRVI GH
Sbjct: 116 LPKGLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRPEWHAPWKNYRVIQGH 175

Query: 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS 234
           LGWVRSVAFD SN WFCTGSADRTIKIWDVA G LKLTLTGHIEQVRGLAVS++HTYMFS
Sbjct: 176 LGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFS 235

Query: 235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294
           AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL LHPT+D+LLTGGRDSVCRVWDIRTKMQI
Sbjct: 236 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQI 295

Query: 295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354
           FAL+GHDNTVCSVFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLTHHKKSVRAM LHP 
Sbjct: 296 FALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPK 355

Query: 355 EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414
           E+ FASASA+N KKF+LPKGEF HNMLSQQKTIIN+MAVNE+GV+ TGGDNGS+WFWDWK
Sbjct: 356 ENAFASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWK 415

Query: 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474
           SGH+FQQ++TIVQPGSL+SEAGIYA  YD TGSRLVTCEADKTIKMW+EDE ATPETHP+
Sbjct: 416 SGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPI 475

Query: 475 NFKPPKDIRRF 485
           NFKPPK+IRRF
Sbjct: 476 NFKPPKEIRRF 486

Pleiotropic regulator of glucose, stress and hormone responses. Also regulates cytochrome P450 CYP90A1/CPD. Coordinates the expression of hormone- and stress-related genes and genes related to cell wall modification and growth, leading to altered sugar-dependent growth and developmental responses. Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. By suppressing the expression of several (1)O(2)-responsive genes, PRL1 seems to play a major role in modulating responses of plants to environmental changes by interconnecting (1)O(2)-mediated retrograde signaling with other signaling pathways. Acts as negative regulator of SNF1-related protein kinases AKIN10 and AKIN11 via the inhibition of their interaction with SKP1/ASK1. Component of the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex, PRL1 may function as the substrate recognition module within this complex, leading to the AKIN10 degradation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39190|PRL2_ARATH Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/476 (73%), Positives = 404/476 (84%), Gaps = 7/476 (1%)

Query: 11  VEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKSTNEPRRQ 70
           VE QSLKKLSLKS +RA ++FSP HG+ P PDPESK+IR+ HK+ + +GG++  ++P R 
Sbjct: 10  VETQSLKKLSLKSVRRAREIFSPVHGQFPQPDPESKRIRLCHKIQVAFGGVEPASKPTRI 69

Query: 71  VNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGASGKSS 130
            +     H ++ +     LALPGP+GS++ +K+  + ALVVGP+  P+ LNN G  GKS+
Sbjct: 70  AD-----HNSEKTAPLKALALPGPKGSKELRKSATEKALVVGPTLPPRDLNNTGNPGKST 124

Query: 131 AIVSTSAS-SERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTW 189
           AI+    S SERNLST+A+MER+PS+WPRPEWHAPWK YRV+ GHLGWVRSVAFD SN W
Sbjct: 125 AILPAPGSFSERNLSTAALMERMPSRWPRPEWHAPWKNYRVLQGHLGWVRSVAFDPSNEW 184

Query: 190 FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN 249
           FCTGSADRTIKIWDVA G LKLTLTGHI QVRGLAVS++HTYMFSAGDDKQVKCWDLEQN
Sbjct: 185 FCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQN 244

Query: 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
           KVIRSYHGHL GVYCL LHPT+D++LTGGRDSVCRVWDIRTKMQIF L  HD+ V SV  
Sbjct: 245 KVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVLP-HDSDVFSVLA 303

Query: 310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKF 369
           RPTDPQV+TGSHDSTIKFWDLRYGK+M T+T+HKK+VRAMALHP E+ F SASA+NIKKF
Sbjct: 304 RPTDPQVITGSHDSTIKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASADNIKKF 363

Query: 370 NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG 429
           +LPKGEF HNMLS Q+ IIN++AVNE+GV+ TGGD G LWFWDWKSGHNFQ+A+TIVQPG
Sbjct: 364 SLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGGLWFWDWKSGHNFQRAETIVQPG 423

Query: 430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF 485
           SL+SEAGIYA  YD TGSRLVTCE DKTIKMW+EDE ATPETHPLNFKPPK+IRRF
Sbjct: 424 SLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKEIRRF 479

Pleiotropic regulator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q922V4|PLRG1_MOUSE Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=2 SV=1

 Score =  467 bits (1202), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/505 (48%), Positives = 320/505 (63%), Gaps = 35/505 (6%)

Query: 8   LEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGI------ 61
           +E V+  S+  L  +S KR  D+F   +G+  P D ES K +++ KL  EYG +      
Sbjct: 2   VEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTS 61

Query: 62  -KSTNEPRRQVNSTTIAHRNQPSGS-SDVLAL-----PGPEG-----------SRDAQKA 103
            ++  E   Q  + +  H+  P+    DV  L     P P G            R   ++
Sbjct: 62  KENLKEKGPQNATDSYPHKQYPANQGQDVEYLVTGTHPYPAGPGVALTADTKIQRMPSES 121

Query: 104 GAQNALVVGPSAQPKGLNNVG----------ASGKSSAIVSTSASSERNLSTSAIMERIP 153
            AQ+  V  PS      N  G          AS +S      S     N   SA+M +  
Sbjct: 122 AAQSLAVALPSQTRVDANRTGPAGSEYRHPGASDRSQPTAMNSIMETGNTKNSALMAKKA 181

Query: 154 SKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
              P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKIWD+A G LKL+L
Sbjct: 182 PTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSL 241

Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273
           TGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS VY L LHPT+D+
Sbjct: 242 TGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTLDV 301

Query: 274 LLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333
           L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSHD+TI+ WDL  G
Sbjct: 302 LVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAG 361

Query: 334 KTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAV 393
           KT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N LS    IIN++AV
Sbjct: 362 KTRVTLTNHKKSVRAVVLHPLLYTFASGSPDNIKQWKFPDGGFIQN-LSGHNAIINTLAV 420

Query: 394 NEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE 453
           N +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A ++D + SRL+T E
Sbjct: 421 NADGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDRSESRLLTAE 480

Query: 454 ADKTIKMWREDETATPETHPLNFKP 478
           ADKTIK++REDETAT ETHP+++KP
Sbjct: 481 ADKTIKVYREDETATEETHPVSWKP 505

Necessary for spliceosome assembly and for pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q9WUC8|PLRG1_RAT Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/506 (48%), Positives = 323/506 (63%), Gaps = 36/506 (7%)

Query: 8   LEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGI------ 61
           +E V+  S+  L  +S KR  D+F   +G+  P D ES K +++ KL  EYG +      
Sbjct: 2   VEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTS 61

Query: 62  -KSTNEPRRQVNSTTIAHRNQPSGS-SDVLAL--------PGP--------EGSRDAQKA 103
            ++  E   Q    +  H+  P+    DV  L        PGP        +  R   ++
Sbjct: 62  KENLKEKGPQNAPDSYPHKQYPANQGQDVEYLVTGTHPYPPGPGVALTADTKIQRMPSES 121

Query: 104 GAQNALVVGPS--------AQPKG--LNNVGASGKSSAIVSTSASSE-RNLSTSAIMERI 152
            AQ+  V  PS          P G    + GAS +S      S   E  N   SA+M + 
Sbjct: 122 AAQSLAVALPSQTRVDANRTAPAGSEYRHPGASDRSQPTAMNSMIMETSNTKNSALMAKK 181

Query: 153 PSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT 212
               P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKIWD+A G LKL+
Sbjct: 182 APTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLS 241

Query: 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID 272
           LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS VY L LHPTID
Sbjct: 242 LTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTID 301

Query: 273 ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332
           +L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSHD+TI+ WDL  
Sbjct: 302 VLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVA 361

Query: 333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA 392
           GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N LS    IIN++A
Sbjct: 362 GKTRVTLTNHKKSVRAVVLHPLHYTFASGSPDNIKQWKFPDGGFIQN-LSGHNAIINTLA 420

Query: 393 VNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC 452
           VN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A ++D + SRL+T 
Sbjct: 421 VNTDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDRSESRLLTA 480

Query: 453 EADKTIKMWREDETATPETHPLNFKP 478
           EADKTIK++REDETAT ETHP+++KP
Sbjct: 481 EADKTIKVYREDETATEETHPVSWKP 506

Necessary for spliceosome assembly and for pre-mRNA splicing.

Rattus norvegicus (taxid: 10116)

>sp|Q2KID6|PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1

 Score =  462 bits (1190), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/508 (47%), Positives = 324/508 (63%), Gaps = 41/508 (8%)

Query: 8   LEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGI------ 61
           +E V+  S+  L  +S KR  D+F   +G+  P D ES K +++ KL  EYG +      
Sbjct: 2   VEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTS 61

Query: 62  -KSTNEPRRQVNSTTIAHRNQPSGSSDVLAL---------PGP--------EGSRDAQKA 103
            ++  E   Q  S +  H+  P+     +           PGP        +  R   ++
Sbjct: 62  KENLKEKVPQNASDSYGHKQYPANQGQEVEYLVTGTHPYPPGPGVALTADTKIQRMPSES 121

Query: 104 GAQNALVVGPSAQPKGLNN--VGASG-----------KSSAIVSTSASSERNLSTSAIME 150
            AQ+  V  P++Q +   N  V A G           + +  V    S+ +N   SA+M 
Sbjct: 122 AAQSLAVALPASQARADANRPVPAGGEYRHPGAPDRAQPAGAVVMEGSNAKN---SALMA 178

Query: 151 RIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK 210
           +     P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKIWD+A G LK
Sbjct: 179 KKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLK 238

Query: 211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT 270
           L+LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS VY L LHPT
Sbjct: 239 LSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPT 298

Query: 271 IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL 330
           ID+L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSHD+TI+ WDL
Sbjct: 299 IDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDL 358

Query: 331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINS 390
             GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N LS    IIN+
Sbjct: 359 VAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQN-LSGHNAIINT 417

Query: 391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLV 450
           + VN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A ++D + SRL+
Sbjct: 418 LTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLL 477

Query: 451 TCEADKTIKMWREDETATPETHPLNFKP 478
           T EADKTIK+++ED+TAT ETHP+++KP
Sbjct: 478 TAEADKTIKVYKEDDTATEETHPVSWKP 505

Necessary for spliceosome assembly and for pre-mRNA splicing.

Bos taurus (taxid: 9913)

>sp|O43660|PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1

 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/506 (47%), Positives = 317/506 (62%), Gaps = 36/506 (7%)

Query: 8   LEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGI------ 61
           +E V+  S+  L  +S KR  D+F   +G+  P D ES K +++ KL  EYG +      
Sbjct: 2   VEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTS 61

Query: 62  -KSTNEPRRQVNSTTIAHRNQPSGSSDVLAL---------PGP--------EGSRDAQKA 103
            ++  E   Q  + +  H+  P+     +           PGP        +  R   ++
Sbjct: 62  KENLKEKGPQNATDSYVHKQYPANQGQEVEYFVAGTHPYPPGPGVALTADTKIQRMPSES 121

Query: 104 GAQNALVVGPSAQPKGLNNV----------GASGKSSAIVSTSASSER-NLSTSAIMERI 152
            AQ+  V  P       N            GAS +       S   E  N   SA+M + 
Sbjct: 122 AAQSLAVALPLQTKADANRTAPSGSEYRHPGASDRPQPTAMNSIVMETGNTKNSALMAKK 181

Query: 153 PSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT 212
               P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKIWD+A G LKL+
Sbjct: 182 APTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLS 241

Query: 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID 272
           LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS VY L LHPTID
Sbjct: 242 LTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTID 301

Query: 273 ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332
           +L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSHD+TI+ WDL  
Sbjct: 302 VLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVA 361

Query: 333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA 392
           GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N LS    IIN++ 
Sbjct: 362 GKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQN-LSGHNAIINTLT 420

Query: 393 VNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC 452
           VN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A ++D + SRL+T 
Sbjct: 421 VNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTA 480

Query: 453 EADKTIKMWREDETATPETHPLNFKP 478
           EADKTIK++RED+TAT ETHP+++KP
Sbjct: 481 EADKTIKVYREDDTATEETHPVSWKP 506

Necessary for spliceosome assembly and for pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|O13615|PRP46_SCHPO Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp5 PE=1 SV=1

 Score =  449 bits (1156), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/470 (48%), Positives = 309/470 (65%), Gaps = 18/470 (3%)

Query: 19  LSLKSQKRALDLFSPTHGRLPP-PDPESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIA 77
           L+  S + +  LF    G +    D  ++ ++ ++K +LEYG +      +R+       
Sbjct: 16  LTTNSLRTSKTLFGAEFGSVTSFDDTVAQNLKRTYKEHLEYGSVLGGTVGKRKNR----- 70

Query: 78  HRNQPSGSSDVLALPGPEGSRDAQ---KAGAQNALVVGPSAQPKGLNNVGASGKSSAIVS 134
           H  + +  S+ L +     +  +Q   K    N  + G  +  + L  +   G   A   
Sbjct: 71  HYEEDTIGSNALTVRADSENPSSQVITKFSDPNKKIAGQVSM-QSLEKI--KGVPEAAHR 127

Query: 135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGS 194
            +  S+ +L    + E+I     RPEWHAPW   RVISGHLGWVR V  +  N WFCTG+
Sbjct: 128 IAGESQASLVKRTLAEQI-----RPEWHAPWTLMRVISGHLGWVRCVDVEPGNQWFCTGA 182

Query: 195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254
            DRTIKIWD+A G LKLTLTGHI  VRGLAVS +H Y+FS G+DK VKCWDLE NKVIR 
Sbjct: 183 GDRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRH 242

Query: 255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP 314
           YHGHLSGVY L LHPT+D+L+T GRD+V RVWD+RT+  +  L+GH +TV S+  +  DP
Sbjct: 243 YHGHLSGVYALKLHPTLDVLVTAGRDAVARVWDMRTRQNVHVLSGHKSTVASLAVQEFDP 302

Query: 315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKG 374
           QVVTGS DSTI+ WDL  GKT+ TLTHHKK+VRA++LHP E  FAS S++NIK +  P+G
Sbjct: 303 QVVTGSMDSTIRLWDLAAGKTLTTLTHHKKTVRALSLHPDEFTFASGSSDNIKHWKFPEG 362

Query: 375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE 434
            F+ N       I+N++++N + V+ +G DNGS+ FWDWKSGH +Q+ Q++VQPGSLDSE
Sbjct: 363 AFMGN-FEGHNAIVNTLSINSDNVMFSGADNGSMCFWDWKSGHKYQELQSVVQPGSLDSE 421

Query: 435 AGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRR 484
           AGI+A S+D TG RL+TCEADK++K++++ + ATPETHP     P ++RR
Sbjct: 422 AGIFASSFDKTGLRLITCEADKSVKIYKQVDNATPETHPNLPWTPSNLRR 471

Required for both cell cycle progression at G2/M and pre-mRNA splicing. Interacts genetically with the PRP4 kinase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5BE22|PRP46_EMENI Pre-mRNA-splicing factor prp46 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=prp46 PE=3 SV=1

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/364 (56%), Positives = 263/364 (72%), Gaps = 5/364 (1%)

Query: 126 SGKSSAIVS----TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSV 181
           SG S+A+V      S ++  +  TS I     ++   PEWHAPWK  RVISGHLGWVRS+
Sbjct: 90  SGASTALVRRGGRASGAAGDDKPTSLIQRPSATRQQPPEWHAPWKLMRVISGHLGWVRSL 149

Query: 182 AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV 241
           A + +N WF +G+ DRTIKIW++A G L+LTLTGHI  VRGLAVS +H Y+FS G+DK V
Sbjct: 150 AVEPNNEWFASGAGDRTIKIWNLATGALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMV 209

Query: 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD 301
           KCWDLE NKVIR YHGHLSGVY L LHP +D+L+TGGRD V RVWD+RT+  I  L+GH 
Sbjct: 210 KCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTGGRDGVARVWDMRTRSNIHVLSGHT 269

Query: 302 NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA 361
            TV  V  +  DPQV+TGS D+T++ WDL  GKTM  LTHHKK +R++A HP E  FASA
Sbjct: 270 GTVADVQCQEADPQVITGSLDATVRLWDLAAGKTMGVLTHHKKGIRSLATHPREFTFASA 329

Query: 362 SAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ 421
           S  +IK++  P GEF+ N       IIN+++VNE+ VL +GGDNGS+ FWDWK+G+ +Q 
Sbjct: 330 STGSIKQWKCPGGEFMQN-FEGHNAIINTLSVNEDNVLFSGGDNGSMSFWDWKTGYRYQT 388

Query: 422 AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKD 481
             T  QPGSL++EAGI   ++D TG RL+T EADKTIK+W++D+ ATPETHP+ + P   
Sbjct: 389 IDTTAQPGSLEAEAGIMTSTFDRTGLRLITGEADKTIKVWKQDDQATPETHPVTWAPTLG 448

Query: 482 IRRF 485
            +R+
Sbjct: 449 RQRY 452

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q4WT34|PRP46_ASPFU Pre-mRNA-splicing factor prp46 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=prp46 PE=3 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/379 (54%), Positives = 265/379 (69%), Gaps = 7/379 (1%)

Query: 113 PSAQPKGLNNVGASGKSSAIVSTSASSERNLST------SAIMERIPSKWPRPEWHAPWK 166
           P  QP+       SG S ++V  +A              S I     ++  RP+WH PWK
Sbjct: 76  PKIQPQTKPQADGSGASMSLVKRAAGPAAGGVGGEGQPKSLIQRPSATRQQRPDWHPPWK 135

Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS 226
             RVISGHLGWVRS+A + +N WF +G+ DRTIKIW++A G L+LTLTGHI  VRGLAVS
Sbjct: 136 LMRVISGHLGWVRSLAVEPNNEWFASGAGDRTIKIWNLATGALRLTLTGHISTVRGLAVS 195

Query: 227 SKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286
            +H Y+FS G+DK VKCWDLE NKVIR YHGHLSGVY L LHP +D+L+TGGRD V RVW
Sbjct: 196 PRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTGGRDGVARVW 255

Query: 287 DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346
           D+RT+  I  L+GH  TV  +  +  DPQ++TGS D+T++ WDL  GKTM  LTHHKK V
Sbjct: 256 DMRTRSNIHVLSGHKGTVADLKCQEADPQIITGSLDATVRLWDLAAGKTMGVLTHHKKGV 315

Query: 347 RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
           R +A+HP E  FASAS  +IK++  P+G+F+ N       +INS+AVNE+ VL +GGDNG
Sbjct: 316 RNLAIHPREFTFASASTGSIKQWKCPEGDFMQN-FEGHNAVINSLAVNEDNVLFSGGDNG 374

Query: 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET 466
           S+ FWDWK+G+ FQ   T+ QPGSLD+EAGI + ++D TG RL+T EADKTIK+W+ D+ 
Sbjct: 375 SMCFWDWKTGYKFQSIDTMAQPGSLDAEAGIMSATFDRTGLRLITGEADKTIKVWKPDDE 434

Query: 467 ATPETHPLNFKPPKDIRRF 485
           ATPE+HP+ + P    +R+
Sbjct: 435 ATPESHPVTWAPTLGRQRY 453

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q6C709|PRP46_YARLI Pre-mRNA-splicing factor PRP46 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PRP46 PE=3 SV=2

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/465 (48%), Positives = 302/465 (64%), Gaps = 46/465 (9%)

Query: 27  ALDLFSPTHGRLPPPDPE-SKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRN---QP 82
           A DLF P +G L   + E S+ IR + KL  E+  ++      +QV +  +A +    + 
Sbjct: 4   AKDLF-PEYGTLATGENEPSRNIRRAQKLR-EFQNLELPPYLAKQV-AAKMAEKGLAVEA 60

Query: 83  SGSSDVLALPGPEGSRDAQKA--GAQNALVVG--PSA-QP---KGLNNVGASGKSSAIVS 134
           +G   V  + G  GS+  QKA  GA ++ +    PSA QP     L N+GA         
Sbjct: 61  TGGVAVQRIAG--GSQSGQKALMGASSSALTKHTPSASQPTTHDSLTNLGA--------- 109

Query: 135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGS 194
                  NL+ S           +P WHAPW+ YRVI+GH GWVRSV  +  N WF TGS
Sbjct: 110 -------NLTQS-----------KPAWHAPWEIYRVITGHQGWVRSVCVEPENQWFATGS 151

Query: 195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254
           AD+TIKIWD+A G L+LTLTGHI  VR L VS +H YMFS G+DK VKCWDLE NKV+R 
Sbjct: 152 ADKTIKIWDLATGKLRLTLTGHIMGVRALGVSPRHPYMFSGGEDKMVKCWDLETNKVVRH 211

Query: 255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP 314
           YHGHLS VY L +HPT+D+L++ GRD+V RVWDIRT+  +  L+GH +T+  V  + ++P
Sbjct: 212 YHGHLSAVYSLDIHPTLDVLVSAGRDAVARVWDIRTRDPVVVLSGHKSTINRVKFQASEP 271

Query: 315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKG 374
           QV+T S D T++ W+L+ GKTM TLTHHKKSVR + LHP E  F++ASA + K++  P+G
Sbjct: 272 QVITASADETVRLWNLQAGKTMTTLTHHKKSVRGLTLHPEEFTFSTASANSSKQWKCPEG 331

Query: 375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE 434
           + + N    Q  IIN+++VN++ V+ +GGDNGS+ F+DWK+GH FQ  Q+I  PGS++SE
Sbjct: 332 DLVLN-YDDQNAIINTLSVNQDNVMFSGGDNGSIGFYDWKTGHMFQSTQSIPIPGSIESE 390

Query: 435 AGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP-LNFKP 478
            GI+  S+D TG RL+TCEADK+IKMWRE   AT E+ P L +KP
Sbjct: 391 NGIFDSSFDKTGLRLITCEADKSIKMWREKPNATAESDPGLEWKP 435

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
359477184	484	PREDICTED: protein pleiotropic regulator	0.997	1.0	0.841	0.0
224110424	480	predicted protein [Populus trichocarpa]	0.989	1.0	0.837	0.0
356556092	476	PREDICTED: protein pleiotropic regulator	0.979	0.997	0.819	0.0
356529501	477	PREDICTED: protein pleiotropic regulator	0.979	0.995	0.813	0.0
449465573	476	PREDICTED: protein pleiotropic regulator	0.979	0.997	0.818	0.0
312281513	481	unnamed protein product [Thellungiella h	0.989	0.997	0.790	0.0
297804634	481	AT3g16650/MGL6_10 [Arabidopsis lyrata su	0.989	0.997	0.786	0.0
21537191	486	PRL1 protein [Arabidopsis thaliana]	0.989	0.987	0.765	0.0
15234752	486	protein pleiotropic regulatory locus 1 [	0.989	0.987	0.763	0.0
27754713	486	putative PRL1 protein [Arabidopsis thali	0.989	0.987	0.761	0.0

>gi|359477184|ref|XP_002262991.2| PREDICTED: protein pleiotropic regulatory locus 1-like [Vitis vinifera] gi|296083362|emb|CBI22998.3| unnamed protein product [Vitis vinifera]

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/485 (84%), Positives = 434/485 (89%), Gaps = 1/485 (0%)

Query: 1   MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
           MPGP +++EPVEPQSLKKLS KS KRALDLFSP HG   PPDPESKKIR+SHK+ LEYGG
Sbjct: 1   MPGPTVEMEPVEPQSLKKLSFKSLKRALDLFSPIHGHFAPPDPESKKIRLSHKIQLEYGG 60

Query: 61  IKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGL 120
           IKS   P  Q NST     +Q S  S+ LALPG E S+D Q  G QNALVVGPS Q KGL
Sbjct: 61  IKSATNPN-QANSTQPDGNSQASAPSNALALPGTENSKDPQTGGTQNALVVGPSVQQKGL 119

Query: 121 NNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRS 180
           N+VG  GKS+A+VS+S  SERNLSTSAIMERIPSKWPRP W  PW+ YRVISGHLGWVRS
Sbjct: 120 NDVGHLGKSTAVVSSSGPSERNLSTSAIMERIPSKWPRPVWRPPWRNYRVISGHLGWVRS 179

Query: 181 VAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ 240
           +AFD SN+WFCTGSADRTIKIWDV  G LKLTLTGHIEQ+RGLAVS+KHTYMFSAGDDKQ
Sbjct: 180 IAFDPSNSWFCTGSADRTIKIWDVGSGRLKLTLTGHIEQIRGLAVSNKHTYMFSAGDDKQ 239

Query: 241 VKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH 300
           VKCWDLEQNKVIRSYHGHLSGVYCL LHPTIDILLTGGRDSVCRVWDIR+KMQI AL+GH
Sbjct: 240 VKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGH 299

Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360
           DNTVCSVFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLTHHKKSVRAMALHP E  FAS
Sbjct: 300 DNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMATLTHHKKSVRAMALHPKEHTFAS 359

Query: 361 ASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ 420
           ASA+NIKKFNLPKGEFLHNMLSQQKTIIN+MAVNEEGV+AT GDNGS+WFWDWKSGHNFQ
Sbjct: 360 ASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMATAGDNGSMWFWDWKSGHNFQ 419

Query: 421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPK 480
           QAQTIVQPGSLDSEAGIYALSYD+TGSRLVTCEADKTIKMW+EDE ATPETHPLNFKPPK
Sbjct: 420 QAQTIVQPGSLDSEAGIYALSYDLTGSRLVTCEADKTIKMWKEDENATPETHPLNFKPPK 479

Query: 481 DIRRF 485
           DIRRF
Sbjct: 480 DIRRF 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110424|ref|XP_002315516.1| predicted protein [Populus trichocarpa] gi|118487815|gb|ABK95731.1| unknown [Populus trichocarpa] gi|222864556|gb|EEF01687.1| predicted protein [Populus trichocarpa]

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/485 (83%), Positives = 439/485 (90%), Gaps = 5/485 (1%)

Query: 1   MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
           MPGP +++EP+EPQS+KKLS KS KR  DLFSPTH +L PPDPESKKIR++HK+NLEY G
Sbjct: 1   MPGPTVEMEPIEPQSVKKLSFKSLKRTSDLFSPTHAQLAPPDPESKKIRMNHKINLEYKG 60

Query: 61  IKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGL 120
           IKST EP+ QVNS T     + SG S+VLALPG   S  +QK+GAQNALVVGPS Q K  
Sbjct: 61  IKSTCEPQ-QVNSAT----TEASGPSNVLALPGSGDSSVSQKSGAQNALVVGPSLQSKAR 115

Query: 121 NNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRS 180
           ++ G SGKS+A+++ S SSERN STSAIMERIPSKWPRP W  PWK YRVISGHLGWVRS
Sbjct: 116 SDGGVSGKSTAVITASGSSERNFSTSAIMERIPSKWPRPVWRPPWKNYRVISGHLGWVRS 175

Query: 181 VAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ 240
           VAFD SNTWFCTGSADRTIKIWDV  G LKLTLTGHIEQVRGLAVS +HTYMFSAGDDKQ
Sbjct: 176 VAFDPSNTWFCTGSADRTIKIWDVGSGRLKLTLTGHIEQVRGLAVSQRHTYMFSAGDDKQ 235

Query: 241 VKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH 300
           VKCWDLEQNK IRSYHGHLSGVYCL LHPTID+LLTGGRDSVCRVWDIRTK+Q+FAL+GH
Sbjct: 236 VKCWDLEQNKAIRSYHGHLSGVYCLALHPTIDLLLTGGRDSVCRVWDIRTKVQVFALSGH 295

Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360
           DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE CFAS
Sbjct: 296 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEHCFAS 355

Query: 361 ASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ 420
           ASA+NIKKFNLPKGEFLHNMLSQQKTIIN+MAVNE+GV+ATGGDNGSLWFWDWKSGHNFQ
Sbjct: 356 ASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEDGVMATGGDNGSLWFWDWKSGHNFQ 415

Query: 421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPK 480
           QAQTIVQPGSLDSEAGIYA+ YDV+GSRLVTCEADKTIKMW+EDE ATPETHPLN+KPPK
Sbjct: 416 QAQTIVQPGSLDSEAGIYAVCYDVSGSRLVTCEADKTIKMWKEDEDATPETHPLNYKPPK 475

Query: 481 DIRRF 485
           DIRRF
Sbjct: 476 DIRRF 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556092|ref|XP_003546361.1| PREDICTED: protein pleiotropic regulatory locus 1-like [Glycine max]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/481 (81%), Positives = 429/481 (89%), Gaps = 6/481 (1%)

Query: 6   MDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKST- 64
           M++EPVEPQSLKKLS KS KRALDLFSP HG L PPD ESKKIR SHK+++EYGGIKST 
Sbjct: 1   MEVEPVEPQSLKKLSFKSLKRALDLFSPIHGHLAPPDAESKKIRTSHKVSVEYGGIKSTA 60

Query: 65  NEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVG 124
           N+P  QV+S T     Q  G S+ LALPGP  S+D+QK G QNALVVGP+      N+ G
Sbjct: 61  NQPPHQVSSAT-----QDPGPSNTLALPGPGDSKDSQKGGPQNALVVGPTMPSTTPNDTG 115

Query: 125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFD 184
              KS+A+VS S SSERNLSTSA+MER+PSKWPRP WHAPWK YRVISGHLGWVRSVA D
Sbjct: 116 FQSKSTAVVSASGSSERNLSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAVD 175

Query: 185 HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244
            SNTWFCTGSADRTIKIWD+A G LKLTLTGHIEQVRGLAVS++HTYMFSAGDDKQVKCW
Sbjct: 176 PSNTWFCTGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCW 235

Query: 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV 304
           DLEQNKVIRSYHGHLSGVYCL LHPTID+LLTGGRDSVCRVWDIR+KMQI AL+GHDNTV
Sbjct: 236 DLEQNKVIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTV 295

Query: 305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364
           CSVFTRPTDPQVVTGSHD+TIK WDLRYGKTM TLT+HKKSVRAMA HP E  FASASA+
Sbjct: 296 CSVFTRPTDPQVVTGSHDTTIKMWDLRYGKTMSTLTNHKKSVRAMAQHPKEQAFASASAD 355

Query: 365 NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT 424
           NIKKFNLPKGEFLHNMLSQQKTIIN+MAVNEEGV+ TGGDNGS+WFWDWKSGHNFQQ+QT
Sbjct: 356 NIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQSQT 415

Query: 425 IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRR 484
           IVQPGSLDSEAGIYA +YD+TGSRL+TCEADKTIKMW+EDE+ATPETHPLNF+PPKDIRR
Sbjct: 416 IVQPGSLDSEAGIYACTYDLTGSRLITCEADKTIKMWKEDESATPETHPLNFRPPKDIRR 475

Query: 485 F 485
           F
Sbjct: 476 F 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529501|ref|XP_003533329.1| PREDICTED: protein pleiotropic regulatory locus 1-like [Glycine max]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/482 (81%), Positives = 426/482 (88%), Gaps = 7/482 (1%)

Query: 6   MDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKST- 64
           M++EPVEPQSLKKLS KS KRALDLFSP HG L  PD ESKKIR SHK+++EYGGIKST 
Sbjct: 1   MEVEPVEPQSLKKLSFKSLKRALDLFSPIHGHLATPDAESKKIRTSHKVSVEYGGIKSTA 60

Query: 65  -NEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNV 123
              P RQV+S T     Q  GSS+ LALPGP  S+D+QK G QNALVVGP+      N+ 
Sbjct: 61  NQPPPRQVSSAT-----QDPGSSNTLALPGPGDSKDSQKGGPQNALVVGPTIPSTTPNDT 115

Query: 124 GASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAF 183
           G   KS+A+VS S SSERNLSTSA+MER+PSKWPRP WHAPWK YRVISGHLGWVRSVA 
Sbjct: 116 GFQNKSTAVVSASGSSERNLSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAV 175

Query: 184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243
           D SNTWFCTGSADRTIKIWD+A G LKLTLTGHIEQVRGLAVS++HTYMFSAGDDKQVKC
Sbjct: 176 DPSNTWFCTGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKC 235

Query: 244 WDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT 303
           WDLEQNKVIRSYHGHLSGVYCL LHPTID+LLTGGRDSVCRVWDIR+KMQI AL+GHDNT
Sbjct: 236 WDLEQNKVIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNT 295

Query: 304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA 363
           VCSVFTRPTDPQVVTGSHD+TIK WDLRYGKTM TLT+HKKSVRAMA HP E  FASASA
Sbjct: 296 VCSVFTRPTDPQVVTGSHDTTIKMWDLRYGKTMSTLTNHKKSVRAMAQHPKEQAFASASA 355

Query: 364 ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQ 423
           +NIKKF LPKGEF HNMLSQQKTIIN+MAVNEEGV+ TGGDNGS+WFWDWKSGHNFQQ+Q
Sbjct: 356 DNIKKFTLPKGEFCHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQSQ 415

Query: 424 TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIR 483
           TIVQPGSLDSEAGIYA +YD+TGSRL+TCEADKTIKMW+EDE+ATPETHPLNF+PPKDIR
Sbjct: 416 TIVQPGSLDSEAGIYACTYDLTGSRLITCEADKTIKMWKEDESATPETHPLNFRPPKDIR 475

Query: 484 RF 485
           RF
Sbjct: 476 RF 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465573|ref|XP_004150502.1| PREDICTED: protein pleiotropic regulatory locus 1-like [Cucumis sativus] gi|449521393|ref|XP_004167714.1| PREDICTED: protein pleiotropic regulatory locus 1-like [Cucumis sativus]

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/479 (81%), Positives = 427/479 (89%), Gaps = 4/479 (0%)

Query: 8   LEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKST-NE 66
           +E VEPQSLKKLS KS KRALDLFSP HG + P D ESKKIRISHK+++EYGG+K+T  +
Sbjct: 1   METVEPQSLKKLSFKSLKRALDLFSPVHGHVAPLDSESKKIRISHKISVEYGGLKNTGTK 60

Query: 67  PRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGAS 126
           P  Q +S   +     S  S+ LALPGP  SRD  K+GAQNA+V+GP+ QP   N+ G  
Sbjct: 61  PTGQASSAPDSAIGT-SAPSNALALPGPGDSRDV-KSGAQNAVVIGPTVQPNTQNDGGLQ 118

Query: 127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHS 186
           G+SSAIVS   SSER +STSAIMERIPSKWPRP WHAPW+ YRVISGHLGWVRSVAFD S
Sbjct: 119 GRSSAIVSAPGSSER-MSTSAIMERIPSKWPRPVWHAPWRNYRVISGHLGWVRSVAFDPS 177

Query: 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246
           NTWFCTGSADRTIKIWDVA G LKLTLTGHIEQVRGLAVS++HTYMFSAGDDKQVKCWDL
Sbjct: 178 NTWFCTGSADRTIKIWDVASGKLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDL 237

Query: 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS 306
           EQNKVIR YHGHLSGVYCL LHPTID+LLTGGRDSVCRVWDIR+KMQI AL+GHDNTVCS
Sbjct: 238 EQNKVIRHYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCS 297

Query: 307 VFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENI 366
           VFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLT+HKKSVRAMALHP E  FASASA+NI
Sbjct: 298 VFTRPTDPQVVTGSHDTTIKFWDLRYGKTMTTLTYHKKSVRAMALHPKEHSFASASADNI 357

Query: 367 KKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIV 426
           KKFNLP+GEF+HNMLSQQKTIIN+MAVNEEGV+ATGGDNGSLWFWDWKSGHNFQQ+QTIV
Sbjct: 358 KKFNLPRGEFVHNMLSQQKTIINAMAVNEEGVMATGGDNGSLWFWDWKSGHNFQQSQTIV 417

Query: 427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF 485
           QPGSLDSEAGIYALSYD+TGSRL+TCEADKTIKMW+EDE ATPETHPLNFKPPKDIRRF
Sbjct: 418 QPGSLDSEAGIYALSYDITGSRLITCEADKTIKMWKEDENATPETHPLNFKPPKDIRRF 476

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281513|dbj|BAJ33622.1| unnamed protein product [Thellungiella halophila]

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/486 (79%), Positives = 430/486 (88%), Gaps = 6/486 (1%)

Query: 1   MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
           MP P  +LEP+EPQSLKKLSLKS KRALDLFSP HG+  PPD E+KKIR+SHK+ + +GG
Sbjct: 1   MPAPTTELEPIEPQSLKKLSLKSLKRALDLFSPVHGQFAPPDAEAKKIRLSHKMKVAFGG 60

Query: 61  IKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGL 120
           ++  ++P RQ +  +     + +G+S+ LALPGPEGS+  QK     ALVVGP+ QPKGL
Sbjct: 61  VEPVSQPPRQPDRNS-----EQAGTSNALALPGPEGSKSIQKGVTDKALVVGPTLQPKGL 115

Query: 121 NNVGASGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVR 179
           N +GASGKS+ I+  + SS ERN STSA+MERIPS+WPRPEWHAPWK YRVI GHLGWVR
Sbjct: 116 NGIGASGKSTTIIPANGSSYERNFSTSALMERIPSRWPRPEWHAPWKNYRVIQGHLGWVR 175

Query: 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239
           SVAFD SN WFCTGSADRTIKIWDVA G LKLTLTGHIEQVRGLAVS++HTYMFSAGDDK
Sbjct: 176 SVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDK 235

Query: 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG 299
           QVKCWDLEQNKVIRSYHGHLSGVYCL LHPT+D+LLTGGRDSVCRVWDIRTKMQIFAL+G
Sbjct: 236 QVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSG 295

Query: 300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359
           HDNTVCSVFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLTHHKKSVRAM LHP E+ FA
Sbjct: 296 HDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMTTLTHHKKSVRAMTLHPKENAFA 355

Query: 360 SASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF 419
           SASA+N KKF+LPKGEF HNMLSQQKTIIN+MAVNE+GV+ TGGDNGS+WFWDWKSGH+F
Sbjct: 356 SASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWKSGHSF 415

Query: 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPP 479
           QQ++TIVQPGSL+SEAGIYA  YD TGSRLVTCEADKTIKMW+EDE ATPETHP+NFKPP
Sbjct: 416 QQSETIVQPGSLESEAGIYAACYDHTGSRLVTCEADKTIKMWKEDENATPETHPVNFKPP 475

Query: 480 KDIRRF 485
           K+IRRF
Sbjct: 476 KEIRRF 481

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804634|ref|XP_002870201.1| AT3g16650/MGL6_10 [Arabidopsis lyrata subsp. lyrata] gi|297316037|gb|EFH46460.1| AT3g16650/MGL6_10 [Arabidopsis lyrata subsp. lyrata]

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/486 (78%), Positives = 433/486 (89%), Gaps = 6/486 (1%)

Query: 1   MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
           MP P  ++EP+E QSLKKLSLKS KR+L+LFSP HG+  PPDPE+KKIR+SHK+ + +GG
Sbjct: 1   MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFAPPDPEAKKIRLSHKMKVAFGG 60

Query: 61  IKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGL 120
           ++  ++P RQ + +     N+  G S+ LAL GPEGS+  QK   ++ALVVGP+ QPKGL
Sbjct: 61  LEPVSQPPRQPDRS-----NEQPGPSNALALAGPEGSKSTQKGATESALVVGPTLQPKGL 115

Query: 121 NNVGASGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVR 179
           NN+G+SGKS+ I+  + SS +RNLST+A+MERIPS+WPRPEWHAPWK YRVI GHLGWVR
Sbjct: 116 NNIGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRPEWHAPWKNYRVIQGHLGWVR 175

Query: 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK 239
           SVAFD SN WFCTGSADRTIKIWDVA G LKLTLTGHIEQVRGLAVS++HTYMFSAGDDK
Sbjct: 176 SVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDK 235

Query: 240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG 299
           QVKCWDLEQNKVIRSYHGHLSGVYCL LHPT+D+LLTGGRDSVCRVWDIRTKMQIFAL+G
Sbjct: 236 QVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSG 295

Query: 300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA 359
           HDNTVCSVFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLTHHKKSVRAM LHP E+ FA
Sbjct: 296 HDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFA 355

Query: 360 SASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF 419
           SASA+NIKKF+LPKGEF HNMLSQQKTIIN+MAVNE+GV+ TGGDNGS+WFWDWKSGH+F
Sbjct: 356 SASADNIKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWKSGHSF 415

Query: 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPP 479
           QQ++TIVQPGSL+SEAGIYA  YD TGSRLVTCEADKTIKMW+EDE ATPETHP+NFKPP
Sbjct: 416 QQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPINFKPP 475

Query: 480 KDIRRF 485
           KDIRRF
Sbjct: 476 KDIRRF 481

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537191|gb|AAM61532.1| PRL1 protein [Arabidopsis thaliana]

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/491 (76%), Positives = 428/491 (87%), Gaps = 11/491 (2%)

Query: 1   MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
           MP P  ++EP+E QSLKKLSLKS KR+L+LFSP HG+ PPPDPE+K+IR+SHK+ + +GG
Sbjct: 1   MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFPPPDPEAKQIRLSHKMKVAFGG 60

Query: 61  IKST-NEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPS----A 115
           ++   ++P RQ +       N+  G S+ LAL  PEGS+  QK   ++A+VVGP+     
Sbjct: 61  VEPVVSQPPRQPDRI-----NEQPGPSNALALAAPEGSKSTQKGATESAIVVGPTLLRPI 115

Query: 116 QPKGLNNVGASGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGH 174
            PKGLN  G+SGKS+ I+  + SS +RNLST+A+MERIPS+WPRPEWHAPWK YRVI GH
Sbjct: 116 LPKGLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRPEWHAPWKNYRVIQGH 175

Query: 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS 234
           LGWVRSVAFD SN WFCTGSADRTIKIWDVA G LKLTLTGHIEQVRGLAVS++HTYMFS
Sbjct: 176 LGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFS 235

Query: 235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294
           AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL LHPT+D+LLTGGRDSVCRVWDIRTKMQI
Sbjct: 236 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQI 295

Query: 295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354
           FAL+GHDNTVCSVFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLTHHKKSVRAM LHP 
Sbjct: 296 FALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPK 355

Query: 355 EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414
           E+ FASASA+N KKF+LPKGEF HNMLSQQKTIIN+MAVNE+GV+ TGGDNGS+WFWDWK
Sbjct: 356 ENAFASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWK 415

Query: 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474
           SGH+FQQ++TIVQPGSL+SEAGIYA  YD TGSRLVTCEADKTIKMW+EDE ATPETHP+
Sbjct: 416 SGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPI 475

Query: 475 NFKPPKDIRRF 485
           NFKPPK+IRRF
Sbjct: 476 NFKPPKEIRRF 486

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234752|ref|NP_193325.1| protein pleiotropic regulatory locus 1 [Arabidopsis thaliana] gi|3122638|sp|Q42384.1|PRL1_ARATH RecName: Full=Protein pleiotropic regulatory locus 1; Short=Protein PRL1; AltName: Full=MOS4-associated complex protein 2; Short=MAC protein 2 gi|577733|emb|CAA58031.1| PRL1 [Arabidopsis thaliana] gi|577735|emb|CAA58032.1| PRL1 [Arabidopsis thaliana] gi|2244947|emb|CAB10369.1| PRL1 protein [Arabidopsis thaliana] gi|7268338|emb|CAB78632.1| PRL1 protein [Arabidopsis thaliana] gi|115311503|gb|ABI93932.1| At4g15900 [Arabidopsis thaliana] gi|332658264|gb|AEE83664.1| protein pleiotropic regulatory locus 1 [Arabidopsis thaliana]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/491 (76%), Positives = 428/491 (87%), Gaps = 11/491 (2%)

Query: 1   MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
           MP P  ++EP+E QSLKKLSLKS KR+L+LFSP HG+ PPPDPE+K+IR+SHK+ + +GG
Sbjct: 1   MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFPPPDPEAKQIRLSHKMKVAFGG 60

Query: 61  IKST-NEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPS----A 115
           ++   ++P RQ +       N+  G S+ L+L  PEGS+  QK   ++A+VVGP+     
Sbjct: 61  VEPVVSQPPRQPDRI-----NEQPGPSNALSLAAPEGSKSTQKGATESAIVVGPTLLRPI 115

Query: 116 QPKGLNNVGASGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGH 174
            PKGLN  G+SGKS+ I+  + SS +RNLST+A+MERIPS+WPRPEWHAPWK YRVI GH
Sbjct: 116 LPKGLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRPEWHAPWKNYRVIQGH 175

Query: 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS 234
           LGWVRSVAFD SN WFCTGSADRTIKIWDVA G LKLTLTGHIEQVRGLAVS++HTYMFS
Sbjct: 176 LGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFS 235

Query: 235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294
           AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL LHPT+D+LLTGGRDSVCRVWDIRTKMQI
Sbjct: 236 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQI 295

Query: 295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354
           FAL+GHDNTVCSVFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLTHHKKSVRAM LHP 
Sbjct: 296 FALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPK 355

Query: 355 EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414
           E+ FASASA+N KKF+LPKGEF HNMLSQQKTIIN+MAVNE+GV+ TGGDNGS+WFWDWK
Sbjct: 356 ENAFASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWK 415

Query: 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474
           SGH+FQQ++TIVQPGSL+SEAGIYA  YD TGSRLVTCEADKTIKMW+EDE ATPETHP+
Sbjct: 416 SGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPI 475

Query: 475 NFKPPKDIRRF 485
           NFKPPK+IRRF
Sbjct: 476 NFKPPKEIRRF 486

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754713|gb|AAO22800.1| putative PRL1 protein [Arabidopsis thaliana] gi|225898779|dbj|BAH30520.1| hypothetical protein [Arabidopsis thaliana]

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/491 (76%), Positives = 428/491 (87%), Gaps = 11/491 (2%)

Query: 1   MPGPAMDLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
           MP P  ++EP+E QSLKKLSLKS KR+L+LFSP HG+ PPPDPE+K+IR+SHK+ + +GG
Sbjct: 1   MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFPPPDPEAKQIRLSHKMKVAFGG 60

Query: 61  IKST-NEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPS----A 115
           ++   ++P RQ +       N+  G S+ L+L  PEGS+  QK   ++A+VVGP+     
Sbjct: 61  VEPVVSQPPRQPDRI-----NEQPGPSNALSLAAPEGSKSTQKGATESAIVVGPTLLRPI 115

Query: 116 QPKGLNNVGASGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGH 174
            P+GLN  G+SGKS+ I+  + SS +RNLST+A+MERIPS+WPRPEWHAPWK YRVI GH
Sbjct: 116 LPRGLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRPEWHAPWKNYRVIQGH 175

Query: 175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS 234
           LGWVRSVAFD SN WFCTGSADRTIKIWDVA G LKLTLTGHIEQVRGLAVS++HTYMFS
Sbjct: 176 LGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFS 235

Query: 235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294
           AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL LHPT+D+LLTGGRDSVCRVWDIRTKMQI
Sbjct: 236 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQI 295

Query: 295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354
           FAL+GHDNTVCSVFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLTHHKKSVRAM LHP 
Sbjct: 296 FALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPK 355

Query: 355 EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414
           E+ FASASA+N KKF+LPKGEF HNMLSQQKTIIN+MAVNE+GV+ TGGDNGS+WFWDWK
Sbjct: 356 ENAFASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWK 415

Query: 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474
           SGH+FQQ++TIVQPGSL+SEAGIYA  YD TGSRLVTCEADKTIKMW+EDE ATPETHP+
Sbjct: 416 SGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPI 475

Query: 475 NFKPPKDIRRF 485
           NFKPPK+IRRF
Sbjct: 476 NFKPPKEIRRF 486

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
TAIR|locus:2005539	486	PRL1 "AT4G15900" [Arabidopsis	0.989	0.987	0.731	5.6e-203
TAIR|locus:2089303	479	AT3G16650 "AT3G16650" [Arabido	0.977	0.989	0.692	3e-188
UNIPROTKB|E1BVN5	516	PLRG1 "Uncharacterized protein	0.690	0.649	0.593	8.2e-122
FB|FBgn0030365	482	Tango4 "Transport and Golgi or	0.962	0.968	0.479	2.8e-121
RGD|621047	514	Plrg1 "pleiotropic regulator 1	0.692	0.653	0.602	2.8e-120
UNIPROTKB|O43660	514	PLRG1 "Pleiotropic regulator 1	0.692	0.653	0.596	7.5e-120
MGI|MGI:1858197	513	Plrg1 "pleiotropic regulator 1	0.692	0.654	0.599	1.2e-119
UNIPROTKB|Q2KID6	513	PLRG1 "Pleiotropic regulator 1	0.692	0.654	0.593	1.5e-119
UNIPROTKB|E2QYT6	515	PLRG1 "Uncharacterized protein	0.692	0.652	0.593	1.5e-119
ZFIN|ZDB-GENE-040426-2787	519	plrg1 "pleiotropic regulator 1	0.686	0.641	0.608	2.2e-118

TAIR|locus:2005539 PRL1 "AT4G15900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1964 (696.4 bits), Expect = 5.6e-203, P = 5.6e-203
 Identities = 359/491 (73%), Positives = 408/491 (83%)

Query:     1 MPGPAMDLEPVEPQXXXXXXXXXQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGG 60
             MP P  ++EP+E Q          KR+L+LFSP HG+ PPPDPE+K+IR+SHK+ + +GG
Sbjct:     1 MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFPPPDPEAKQIRLSHKMKVAFGG 60

Query:    61 IKST-NEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQ--- 116
             ++   ++P RQ +       N+  G S+ L+L  PEGS+  QK   ++A+VVGP+     
Sbjct:    61 VEPVVSQPPRQPDRI-----NEQPGPSNALSLAAPEGSKSTQKGATESAIVVGPTLLRPI 115

Query:   117 -PKGLNNVGXXXXXXXXX-XXXXXXERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGH 174
              PKGLN  G                +RNLST+A+MERIPS+WPRPEWHAPWK YRVI GH
Sbjct:   116 LPKGLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRPEWHAPWKNYRVIQGH 175

Query:   175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS 234
             LGWVRSVAFD SN WFCTGSADRTIKIWDVA G LKLTLTGHIEQVRGLAVS++HTYMFS
Sbjct:   176 LGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFS 235

Query:   235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294
             AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL LHPT+D+LLTGGRDSVCRVWDIRTKMQI
Sbjct:   236 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQI 295

Query:   295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354
             FAL+GHDNTVCSVFTRPTDPQVVTGSHD+TIKFWDLRYGKTM TLTHHKKSVRAM LHP 
Sbjct:   296 FALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPK 355

Query:   355 EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK 414
             E+ FASASA+N KKF+LPKGEF HNMLSQQKTIIN+MAVNE+GV+ TGGDNGS+WFWDWK
Sbjct:   356 ENAFASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWK 415

Query:   415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL 474
             SGH+FQQ++TIVQPGSL+SEAGIYA  YD TGSRLVTCEADKTIKMW+EDE ATPETHP+
Sbjct:   416 SGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPI 475

Query:   475 NFKPPKDIRRF 485
             NFKPPK+IRRF
Sbjct:   476 NFKPPKEIRRF 486

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IMP

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0006508 "proteolysis" evidence=IMP

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA;IMP

GO:0010154 "fruit development" evidence=IMP

GO:0010182 "sugar mediated signaling pathway" evidence=RCA;IMP

GO:0048364 "root development" evidence=IMP

GO:0048366 "leaf development" evidence=RCA;IMP

GO:0048825 "cotyledon development" evidence=RCA;IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=IMP

TAIR|locus:2089303 AT3G16650 "AT3G16650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
 Identities = 334/482 (69%), Positives = 390/482 (80%)

Query:     5 AMDLEPVEPQXXXXXXXXXQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKST 64
             A++ E VE Q          +RA ++FSP HG+ P PDPESK+IR+ HK+ + +GG++  
Sbjct:     5 ALNRE-VETQSLKKLSLKSVRRAREIFSPVHGQFPQPDPESKRIRLCHKIQVAFGGVEPA 63

Query:    65 NEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVG 124
             ++P R  +     H ++ +     LALPGP+GS++ +K+  + ALVVGP+  P+ LNN G
Sbjct:    64 SKPTRIAD-----HNSEKTAPLKALALPGPKGSKELRKSATEKALVVGPTLPPRDLNNTG 118

Query:   125 XXXXXXXXXXX-XXXXERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAF 183
                             ERNLST+A+MER+PS+WPRPEWHAPWK YRV+ GHLGWVRSVAF
Sbjct:   119 NPGKSTAILPAPGSFSERNLSTAALMERMPSRWPRPEWHAPWKNYRVLQGHLGWVRSVAF 178

Query:   184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243
             D SN WFCTGSADRTIKIWDVA G LKLTLTGHI QVRGLAVS++HTYMFSAGDDKQVKC
Sbjct:   179 DPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKC 238

Query:   244 WDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT 303
             WDLEQNKVIRSYHGHL GVYCL LHPT+D++LTGGRDSVCRVWDIRTKMQIF L  HD+ 
Sbjct:   239 WDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVLP-HDSD 297

Query:   304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA 363
             V SV  RPTDPQV+TGSHDSTIKFWDLRYGK+M T+T+HKK+VRAMALHP E+ F SASA
Sbjct:   298 VFSVLARPTDPQVITGSHDSTIKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASA 357

Query:   364 ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQ 423
             +NIKKF+LPKGEF HNMLS Q+ IIN++AVNE+GV+ TGGD G LWFWDWKSGHNFQ+A+
Sbjct:   358 DNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGGLWFWDWKSGHNFQRAE 417

Query:   424 TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIR 483
             TIVQPGSL+SEAGIYA  YD TGSRLVTCE DKTIKMW+EDE ATPETHPLNFKPPK+IR
Sbjct:   418 TIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKEIR 477

Query:   484 RF 485
             RF
Sbjct:   478 RF 479

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BVN5 PLRG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1121 (399.7 bits), Expect = 8.2e-122, Sum P(3) = 8.2e-122
 Identities = 200/337 (59%), Positives = 258/337 (76%)

Query:   142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201
             N +++ + ++ P+  P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKI
Sbjct:   174 NKNSALVPKKAPTM-PKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKI 232

Query:   202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261
             WD+A G LKL+LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS 
Sbjct:   233 WDLASGKLKLSLTGHISTVRGVIVSARSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSA 292

Query:   262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321
             VY L LHPTID+L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQVVTGSH
Sbjct:   293 VYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVKCQAAEPQVVTGSH 352

Query:   322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381
             D+TI+ WDL  GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N L
Sbjct:   353 DTTIRLWDLVAGKTRVTLTNHKKSVRAVILHPRHYTFASGSPDNIKQWKFPDGNFIQN-L 411

Query:   382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441
             S    IIN++ VN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A  
Sbjct:   412 SGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACV 471

Query:   442 YDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
             +D + SRL+T EADKTIK+++ED+TAT ETHP+++KP
Sbjct:   472 FDQSESRLLTAEADKTIKVYKEDDTATEETHPISWKP 508

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

FB|FBgn0030365 Tango4 "Transport and Golgi organization 4" [Drosophila melanogaster (taxid:7227)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 230/480 (47%), Positives = 306/480 (63%)

Query:     6 MDLEPVEPQXXXXXXXXXQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYG----GI 61
             M +E V+            KR  DLF    G LP  D   +K+R S K    YG     +
Sbjct:     1 MAMEDVQKHSVHTLIFRSLKRTHDLFVSNQGNLPEIDERLEKLRRSIKAKDGYGLVLDKV 60

Query:    62 KSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLN 121
                 E R+   + T   +                GS     AGA+ A    P      + 
Sbjct:    61 AKIGEARKASGAQTPGDKTLAITDGSATDAASGAGSLVKYNAGARPAEKTAPL-----VT 115

Query:   122 NVGXXXXXXXXXXXXXXXERNLSTSAIMERIPSKWP---RPEWHAPWKCYRVISGHLGWV 178
                                 N + ++ ++ IP K P   +P+WHAPWK  RVISGHLGWV
Sbjct:   116 GTHTSLVRASLANSNADMSANGAIASHLQLIPKKAPSIPKPKWHAPWKLSRVISGHLGWV 175

Query:   179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD 238
             R +A +  N WF TG+ DR IKIWD+A G LKL+LTGH+  VRG+AVS+KH Y+FS G+D
Sbjct:   176 RCIAVEPGNEWFATGAGDRVIKIWDLASGKLKLSLTGHVSTVRGVAVSTKHPYLFSCGED 235

Query:   239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA 298
             +QVKCWDLE NKVIR YHGHLS VY L LHPTID+L T GRDS  R+WD+RTK  +  L 
Sbjct:   236 RQVKCWDLEYNKVIRHYHGHLSAVYSLALHPTIDVLATSGRDSTARIWDMRTKANVHTLT 295

Query:   299 GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF 358
             GH NTV SV  + T+PQ++TGSHDST++ WDL  GK++ TLT+HKKSVR++ LHP+   F
Sbjct:   296 GHTNTVASVVAQATNPQIITGSHDSTVRLWDLAAGKSVCTLTNHKKSVRSIVLHPSLYMF 355

Query:   359 ASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN 418
             ASAS +NIK++  P+G+F+ N +S   +I+N MA N EGVL +GGDNG+++FWDW++G+N
Sbjct:   356 ASASPDNIKQWRCPEGKFVQN-ISGHTSIVNCMAANSEGVLVSGGDNGTMFFWDWRTGYN 414

Query:   419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
             FQ+ Q  VQPGS+DSEAGI+A+ +D +GSRL+T EADKTIK+++ED+ A+ E+HP+N++P
Sbjct:   415 FQRFQAPVQPGSMDSEAGIFAMCFDQSGSRLITAEADKTIKVYKEDDEASEESHPINWRP 474

GO:0003674 "molecular_function" evidence=ND

GO:0009306 "protein secretion" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0007030 "Golgi organization" evidence=IMP

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

RGD|621047 Plrg1 "pleiotropic regulator 1" [Rattus norvegicus (taxid:10116)]

 Score = 1135 (404.6 bits), Expect = 2.8e-120, Sum P(2) = 2.8e-120
 Identities = 203/337 (60%), Positives = 257/337 (76%)

Query:   142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201
             N   SA+M +     P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKI
Sbjct:   171 NTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKI 230

Query:   202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261
             WD+A G LKL+LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS 
Sbjct:   231 WDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSA 290

Query:   262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321
             VY L LHPTID+L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSH
Sbjct:   291 VYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSH 350

Query:   322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381
             D+TI+ WDL  GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N L
Sbjct:   351 DTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLHYTFASGSPDNIKQWKFPDGGFIQN-L 409

Query:   382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441
             S    IIN++AVN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A +
Sbjct:   410 SGHNAIINTLAVNTDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACA 469

Query:   442 YDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
             +D + SRL+T EADKTIK++REDETAT ETHP+++KP
Sbjct:   470 FDRSESRLLTAEADKTIKVYREDETATEETHPVSWKP 506

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|O43660 PLRG1 "Pleiotropic regulator 1" [Homo sapiens (taxid:9606)]

 Score = 1132 (403.5 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
 Identities = 201/337 (59%), Positives = 256/337 (75%)

Query:   142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201
             N   SA+M +     P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKI
Sbjct:   171 NTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKI 230

Query:   202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261
             WD+A G LKL+LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS 
Sbjct:   231 WDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSA 290

Query:   262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321
             VY L LHPTID+L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSH
Sbjct:   291 VYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSH 350

Query:   322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381
             D+TI+ WDL  GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N L
Sbjct:   351 DTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQN-L 409

Query:   382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441
             S    IIN++ VN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A +
Sbjct:   410 SGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACA 469

Query:   442 YDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
             +D + SRL+T EADKTIK++RED+TAT ETHP+++KP
Sbjct:   470 FDQSESRLLTAEADKTIKVYREDDTATEETHPVSWKP 506

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

MGI|MGI:1858197 Plrg1 "pleiotropic regulator 1, PRL1 homolog (Arabidopsis)" [Mus musculus (taxid:10090)]

 Score = 1130 (402.8 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
 Identities = 202/337 (59%), Positives = 257/337 (76%)

Query:   142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201
             N   SA+M +     P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKI
Sbjct:   170 NTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKI 229

Query:   202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261
             WD+A G LKL+LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS 
Sbjct:   230 WDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSA 289

Query:   262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321
             VY L LHPT+D+L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSH
Sbjct:   290 VYGLDLHPTLDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSH 349

Query:   322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381
             D+TI+ WDL  GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N L
Sbjct:   350 DTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLLYTFASGSPDNIKQWKFPDGGFIQN-L 408

Query:   382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441
             S    IIN++AVN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A +
Sbjct:   409 SGHNAIINTLAVNADGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACA 468

Query:   442 YDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
             +D + SRL+T EADKTIK++REDETAT ETHP+++KP
Sbjct:   469 FDRSESRLLTAEADKTIKVYREDETATEETHPVSWKP 505

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|Q2KID6 PLRG1 "Pleiotropic regulator 1" [Bos taurus (taxid:9913)]

 Score = 1129 (402.5 bits), Expect = 1.5e-119, Sum P(2) = 1.5e-119
 Identities = 200/337 (59%), Positives = 256/337 (75%)

Query:   142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201
             N   SA+M +     P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKI
Sbjct:   170 NAKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKI 229

Query:   202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261
             WD+A G LKL+LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS 
Sbjct:   230 WDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSA 289

Query:   262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321
             VY L LHPTID+L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSH
Sbjct:   290 VYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSH 349

Query:   322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381
             D+TI+ WDL  GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N L
Sbjct:   350 DTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQN-L 408

Query:   382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441
             S    IIN++ VN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A +
Sbjct:   409 SGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACA 468

Query:   442 YDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
             +D + SRL+T EADKTIK+++ED+TAT ETHP+++KP
Sbjct:   469 FDQSESRLLTAEADKTIKVYKEDDTATEETHPVSWKP 505

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|E2QYT6 PLRG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1129 (402.5 bits), Expect = 1.5e-119, Sum P(2) = 1.5e-119
 Identities = 200/337 (59%), Positives = 256/337 (75%)

Query:   142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI 201
             N   SA+M +     P+P+WH PWK YRVISGHLGWVR +A +  N WF TGSADRTIKI
Sbjct:   172 NAKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKI 231

Query:   202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261
             WD+A G LKL+LTGHI  VRG+ VS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS 
Sbjct:   232 WDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSA 291

Query:   262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321
             VY L LHPTID+L+T  RDS  R+WD+RTK  +  L+GH N V +V  +  +PQ++TGSH
Sbjct:   292 VYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSH 351

Query:   322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381
             D+TI+ WDL  GKT +TLT+HKKSVRA+ LHP    FAS S +NIK++  P G F+ N L
Sbjct:   352 DTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQN-L 410

Query:   382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441
             S    IIN++ VN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI+A +
Sbjct:   411 SGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACA 470

Query:   442 YDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
             +D + SRL+T EADKTIK+++ED+TAT ETHP+++KP
Sbjct:   471 FDQSESRLLTAEADKTIKVYKEDDTATEETHPVSWKP 507

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

ZFIN|ZDB-GENE-040426-2787 plrg1 "pleiotropic regulator 1" [Danio rerio (taxid:7955)]

 Score = 1127 (401.8 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
 Identities = 204/335 (60%), Positives = 257/335 (76%)

Query:   145 TSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV 204
             T  ++ R     P+P+WH PWK YRVISGHLGWVRS+A +  N WF TGSADRTIKIWD+
Sbjct:   178 TRTLVPRKAPTMPKPQWHPPWKLYRVISGHLGWVRSIAVEPGNQWFVTGSADRTIKIWDL 237

Query:   205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYC 264
             A G LKL+LTGHI  VRG+AVS++  Y+FS G+DKQVKCWDLE NKVIR YHGHLS VY 
Sbjct:   238 ASGKLKLSLTGHISTVRGVAVSNRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYD 297

Query:   265 LGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT-GSHDS 323
             L LHPTID+L+T  RD+  RVWDIRTK  +  L+GH NTV +V  +  +PQVVT GSHD+
Sbjct:   298 LDLHPTIDVLVTCSRDATARVWDIRTKANVHTLSGHTNTVATVKCQSAEPQVVTVGSHDT 357

Query:   324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ 383
             TI+ WDL  GKT  TLT+HKKSVRA+ LHP +  FAS S +NIK++  P G F+ N LS 
Sbjct:   358 TIRLWDLVAGKTRATLTNHKKSVRALVLHPRQYTFASGSPDNIKQWKFPDGNFIQN-LSG 416

Query:   384 QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD 443
                IIN++AVN +GVL +G DNG++  WDW++G+NFQ+    VQPGSLDSE+GI++  +D
Sbjct:   417 HNAIINTLAVNSDGVLVSGADNGTIHMWDWRTGYNFQRIHAAVQPGSLDSESGIFSCVFD 476

Query:   444 VTGSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
              + SRL+T EADKTIK+++ED+TAT E+HP+N+KP
Sbjct:   477 QSESRLITAEADKTIKVYKEDDTATEESHPVNWKP 511

GO:0003824 "catalytic activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IGI;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6FJZ9	PRP46_CANGA	No assigned EC number	0.5227	0.6742	0.7658	yes	no
Q9WUC8	PLRG1_RAT	No assigned EC number	0.4881	0.9690	0.9143	yes	no
Q42384	PRL1_ARATH	No assigned EC number	0.7637	0.9896	0.9876	yes	no
Q75BY3	PRP46_ASHGO	No assigned EC number	0.5057	0.7092	0.8094	yes	no
Q2KID6	PLRG1_BOVIN	No assigned EC number	0.4724	0.9628	0.9103	yes	no
O13615	PRP46_SCHPO	No assigned EC number	0.4851	0.9319	0.9556	yes	no
Q6C709	PRP46_YARLI	No assigned EC number	0.4838	0.8639	0.9501	yes	no
Q12417	PRP46_YEAST	No assigned EC number	0.5242	0.6762	0.7272	yes	no
Q5BE22	PRP46_EMENI	No assigned EC number	0.5631	0.7402	0.7942	yes	no
Q4WT34	PRP46_ASPFU	No assigned EC number	0.5408	0.7670	0.8211	yes	no
P0CS48	PRP46_CRYNJ	No assigned EC number	0.4929	0.8453	0.8668	yes	no
Q39190	PRL2_ARATH	No assigned EC number	0.7310	0.9670	0.9791	no	no
Q922V4	PLRG1_MOUSE	No assigned EC number	0.4831	0.9690	0.9161	yes	no
O43660	PLRG1_HUMAN	No assigned EC number	0.4723	0.9690	0.9143	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_X3939	SubName- Full=Putative uncharacterized protein; (480 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00170116	hypothetical protein (1268 aa)				•	•		•		0.778
	eugene3.00440042	hypothetical protein (2357 aa)				•	•		•		0.701
	gw1.XIX.527.1	annotation not avaliable (833 aa)				•	•		•		0.700
	eugene3.00130457	hypothetical protein (846 aa)				•	•		•		0.692
	estExt_Genewise1_v1.C_LG_IV2251	hypothetical protein (909 aa)				•	•		•		0.596
	eugene3.00150362	hypothetical protein (256 aa)				•	•		•		0.575
	gw1.X.4645.1	annotation not avaliable (503 aa)			•	•	•		•	•	0.573
	eugene3.00081601	hypothetical protein (581 aa)			•		•		•	•	0.536
	fgenesh4_pm.C_LG_I000327	hypothetical protein (687 aa)				•	•		•		0.527
	eugene3.00031096	SubName- Full=Putative uncharacterized protein; (687 aa)				•	•		•		0.521

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	485
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-87
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-54
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-43
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-40
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-16
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-10
smart00320	40	smart00320, WD40, WD40 repeats	6e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	8e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  269 bits (689), Expect = 2e-87
 Identities = 104/298 (34%), Positives = 152/298 (51%), Gaps = 11/298 (3%)

Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS 226
             R + GH G V  VAF        TGS D TIK+WD+  G L  TL GH   VR +A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 227 SKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286
           +  TY+ S   DK ++ WDLE  + +R+  GH S V  +   P   IL +  RD   +VW
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 287 DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346
           D+ T   +  L GH + V SV   P    V + S D TIK WDLR GK + TLT H   V
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180

Query: 347 RAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGD- 404
            ++A  P  +   S+S++  IK ++L  G+ L  +   +   +NS+A + +G L   G  
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-GVNSVAFSPDGYLLASGSE 239

Query: 405 NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
           +G++  WD ++G   +  QT+           + +L++   G RL +  AD TI++W 
Sbjct: 240 DGTIRVWDLRTG---ECVQTLSGH-----TNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  182 bits (465), Expect = 4e-54
 Identities = 72/198 (36%), Positives = 103/198 (52%)

Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
           +C R ++GH  +V SVAF        + S D+TIK+WDV  G    TL GH + V  +A 
Sbjct: 84  ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143

Query: 226 SSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285
           S   T++ S+  D  +K WDL   K + +  GH   V  +   P  + LL+   D   ++
Sbjct: 144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Query: 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
           WD+ T   +  L GH+N V SV   P    + +GS D TI+ WDLR G+ + TL+ H  S
Sbjct: 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS 263

Query: 346 VRAMALHPTEDCFASASA 363
           V ++A  P     AS SA
Sbjct: 264 VTSLAWSPDGKRLASGSA 281

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  155 bits (393), Expect = 1e-43
 Identities = 62/164 (37%), Positives = 87/164 (53%)

Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
           KC   + GH  WV SVAF    T+  + S D TIK+WD+  G    TLTGH  +V  +A 
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 226 SSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV 285
           S     + S+  D  +K WDL   K + +  GH +GV  +   P   +L +G  D   RV
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245

Query: 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
           WD+RT   +  L+GH N+V S+   P   ++ +GS D TI+ WD
Sbjct: 246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  149 bits (375), Expect = 9e-40
 Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 18/306 (5%)

Query: 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTLKLTLTGHIEQVRG 222
           P K  R + GH   V S+AF        +GS  D TIK+WD+  G    TL GH + V  
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 223 LAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRD 280
           LA S     +  S   D  ++ WDL   K++RS   GH   V      P   +L +G  D
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSD 262

Query: 281 SVCRVWDIRTKMQ-IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT--ML 337
              R+WD+R+    +  L+GH ++V SV   P    + +GS D T++ WDL  GK    L
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 338 TLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNE 395
           TL  H+  V +++  P      S  +++  I+ ++L  G+ L   L     +++     +
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT-LEGHSNVLSVSFSPD 381

Query: 396 EGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD 455
             V+++G  +G++  WD  +G   +                + +L +   G  L +  +D
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR--------VTSLDFSPDGKSLASGSSD 433

Query: 456 KTIKMW 461
            TI++W
Sbjct: 434 NTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  125 bits (315), Expect = 2e-31
 Identities = 97/357 (27%), Positives = 161/357 (45%), Gaps = 25/357 (7%)

Query: 120 LNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVR 179
            + +G S  S +++S  +S    L  + + + + S               ++ GH   + 
Sbjct: 18  KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLS--------SLLLRGHEDSIT 69

Query: 180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-TLTG-HIEQVRGLAVSS---KHTYMFS 234
           S+AF        +GS+D TIK+WD+  G   + +L G H   V  LA+SS       + S
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 235 AGDDKQVKCWDLE-QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKM 292
           +  D  VK WDL    K+IR+  GH   V  L   P   +L +G   D   ++WD+RT  
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK 189

Query: 293 QIFALAGHDNTVCSV-FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMAL 351
            +  LAGH + V S+ F+      + +GS D TI+ WDL  GK + +           + 
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 352 HPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLW 409
            P     AS S++  I+ ++L     L   LS   + + S+A + +G +LA+G  +G++ 
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309

Query: 410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT-CEADKTIKMWREDE 465
            WD       +  + +        E  + +LS+   GS LV+    D TI++W    
Sbjct: 310 LWD------LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  115 bits (291), Expect = 4e-29
 Identities = 41/123 (33%), Positives = 60/123 (48%)

Query: 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA 224
            KC   ++GH G V SVAF        + S+D TIK+WD++ G    TL GH   V  +A
Sbjct: 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226

Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
            S     + S  +D  ++ WDL   + +++  GH + V  L   P    L +G  D   R
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286

Query: 285 VWD 287
           +WD
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  100 bits (249), Expect = 9e-23
 Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 4/169 (2%)

Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK--LTLTGHIEQVRGL 223
              R +SGH   V SVAF        +GS+D T+++WD+  G L   LTL GH   V  L
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Query: 224 AVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282
           + S   + + S G DD  ++ WDL   K +++  GH S V  +   P   ++ +G  D  
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGT 393

Query: 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR 331
            R+WD+ T   +  L GH + V S+   P    + +GS D+TI+ WDL+
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.5 bits (197), Expect = 3e-16
 Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 23/272 (8%)

Query: 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGL 267
             +L  + +   +  L  S     + +   D  V   DL    +     GH   +  +  
Sbjct: 18  KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR----GHEDSITSIAF 73

Query: 268 HPTIDILLTGGRDSVCRVWDIRTKMQIFA--LAGHDNTVCSV-FTRPTDPQVVT--GSHD 322
            P  ++LL+G  D   ++WD+    ++       HD++V  +  + P    ++    S D
Sbjct: 74  SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133

Query: 323 STIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFLHN 379
            T+K WDL   GK + TL  H +SV ++A  P     AS S+    IK ++L  G+ L  
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS- 192

Query: 380 MLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI 437
            L+     ++S+A + +G  ++A+G  +G++  WD  +G   +         +L   +  
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--------TLSGHSDS 244

Query: 438 YALSYDVTGSRLVTCEADKTIKMWREDETATP 469
              S+   GS L +  +D TI++W    +++ 
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203
            K  R + GH G V SVAF        +GS D T+++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203
             +  + + GH G V SVAF     +  +GS D TIK+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 25/94 (26%), Positives = 39/94 (41%)

Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
           W                V SV+F        +GS D T+++WD++ G+L   L GH  +V
Sbjct: 356 WDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415

Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254
             L  S     + S   D  ++ WDL+ +    S
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287
           K++R+  GH   V  +   P  ++L +G  D   RVWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287
             +++++  GH   V  +   P    L +G  D   ++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 18/208 (8%)

Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK--------- 228
           V ++ FD    +F T   ++ IKI++  +  +K     H   V  LA  SK         
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKIFE-CESIIKDGRDIHYPVVE-LASRSKLSGICWNSY 543

Query: 229 -HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH---PTIDILLTGGRDSVCR 284
             + + S+  +  V+ WD+ +++++     H   V+ +      PT  +L +G  D   +
Sbjct: 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVK 601

Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML-TLTHHK 343
           +W I   + I  +    N  C  F   +   +  GS D  + ++DLR  K  L T+  H 
Sbjct: 602 LWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS 661

Query: 344 KSVRAMALHPTEDCFASASAENIKKFNL 371
           K+V  +    +    +S++   +K ++L
Sbjct: 662 KTVSYVRFVDSSTLVSSSTDNTLKLWDL 689

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245
           G L  TL GH   V  +A S     + S  DD  V+ WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245
            G L  TL GH   V  +A S    Y+ S  DD  +K WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
            +  L GH   V SV   P    + +GS D T++ WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 290 TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
           +   +  L GH   V SV   P    + +GS D TIK WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 11/188 (5%)

Query: 171 ISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH 229
           + GH   V  V+F  S      +  AD  + +WDV +G     +  H +Q+  L  +   
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180

Query: 230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG-----VYCLGLHPTIDILLTGGRDSVCR 284
           + + +   DK++   D     ++ S   H S      ++       I +  +  +     
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240

Query: 285 VWDIRTKMQIFALAGHDN---TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
           +WD R     ++    D         F   T+   +    +  I+ ++L   +  LT   
Sbjct: 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--LTFCS 298

Query: 342 HKKSVRAM 349
              SV   
Sbjct: 299 SYSSVEPH 306

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 18/178 (10%)

Query: 170 VISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG----LA 224
           ++ G  G +  VAF+        T S D TI  W + +  L   ++  I  ++G    + 
Sbjct: 70  ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG 129

Query: 225 VSSKH----TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID--ILLTGG 278
           + S H      + SAG D  V  WD+E+ K +     H        L   +D  +L T  
Sbjct: 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD--QITSLEWNLDGSLLCTTS 187

Query: 279 RDSVCRVWDIRTKMQIFALAGHDNTVCS--VFTRPTDPQVVTG---SHDSTIKFWDLR 331
           +D    + D R    + ++  H +      ++ +  D  +  G   S    I  WD R
Sbjct: 188 KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	485
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG1188	376	consensus WD40 repeat protein [General function pr	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG1334	559	consensus WD40 repeat protein [General function pr	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.73
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.7
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG2315	566	consensus Predicted translation initiation factor	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
KOG4547	541	consensus WD40 repeat-containing protein [General	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG2314	698	consensus Translation initiation factor 3, subunit	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.5
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.5
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.49
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.47
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.4
PRK04792	448	tolB translocation protein TolB; Provisional	99.39
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.38
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.35
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.33
KOG2314	698	consensus Translation initiation factor 3, subunit	99.33
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.31
KOG4547	541	consensus WD40 repeat-containing protein [General	99.31
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.28
COG4946	668	Uncharacterized protein related to the periplasmic	99.27
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.23
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.22
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.2
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.19
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.18
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.18
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.18
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.16
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.15
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.14
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.11
KOG2315	566	consensus Predicted translation initiation factor	99.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.08
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.08
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.04
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.03
PRK04043	419	tolB translocation protein TolB; Provisional	99.02
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.0
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.99
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.96
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.94
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.93
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.92
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.9
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.9
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.89
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.88
COG4946	668	Uncharacterized protein related to the periplasmic	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.87
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.86
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.85
KOG2695	425	consensus WD40 repeat protein [General function pr	98.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.84
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.81
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.79
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.71
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.7
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.65
KOG3621	726	consensus WD40 repeat-containing protein [General	98.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.62
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.53
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.53
PRK02888	635	nitrous-oxide reductase; Validated	98.5
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.48
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.46
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.42
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.42
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.39
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.29
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.28
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.25
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.24
PRK02888	635	nitrous-oxide reductase; Validated	98.24
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.24
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.22
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.15
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.14
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.13
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.12
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.11
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.1
COG3391	381	Uncharacterized conserved protein [Function unknow	98.08
COG3391	381	Uncharacterized conserved protein [Function unknow	98.07
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.02
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.97
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.91
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.88
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.74
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.72
KOG2395	644	consensus Protein involved in vacuole import and d	97.71
KOG3621	726	consensus WD40 repeat-containing protein [General	97.66
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.66
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.63
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.6
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.6
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.59
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.59
PRK13616	591	lipoprotein LpqB; Provisional	97.53
PRK13616	591	lipoprotein LpqB; Provisional	97.5
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.49
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.45
KOG2395	644	consensus Protein involved in vacuole import and d	97.42
PHA02713	557	hypothetical protein; Provisional	97.42
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.4
PRK10115	686	protease 2; Provisional	97.38
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.37
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.33
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.33
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.27
PHA02713	557	hypothetical protein; Provisional	97.27
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.24
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.2
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.2
KOG2444	238	consensus WD40 repeat protein [General function pr	97.18
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.15
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.15
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.13
PRK10115	686	protease 2; Provisional	97.11
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.11
KOG2444	238	consensus WD40 repeat protein [General function pr	96.99
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.96
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.96
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.94
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.78
PHA03098	534	kelch-like protein; Provisional	96.62
PRK13684	334	Ycf48-like protein; Provisional	96.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.55
PHA03098	534	kelch-like protein; Provisional	96.48
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.48
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.48
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.47
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.45
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.29
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.22
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.13
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.09
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.08
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.07
PRK13684	334	Ycf48-like protein; Provisional	96.04
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.0
PHA02790	480	Kelch-like protein; Provisional	95.99
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.8
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.76
PHA02790	480	Kelch-like protein; Provisional	95.75
KOG2247	615	consensus WD40 repeat-containing protein [General	95.71
COG5167	776	VID27 Protein involved in vacuole import and degra	95.56
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.52
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	95.5
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.32
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.11
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.1
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.08
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.07
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.89
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.87
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.8
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.76
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.67
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.64
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.34
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.32
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.02
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.0
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.83
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.73
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	93.58
COG5167	776	VID27 Protein involved in vacuole import and degra	93.32
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.25
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.93
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.81
KOG2247	615	consensus WD40 repeat-containing protein [General	92.78
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.77
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.67
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.65
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.6
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.58
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.36
PLN02153	341	epithiospecifier protein	92.32
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.21
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.07
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.0
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.91
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.85
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	91.72
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	91.59
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.44
COG5276	370	Uncharacterized conserved protein [Function unknow	91.4
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.34
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.26
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.21
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.86
COG5276	370	Uncharacterized conserved protein [Function unknow	90.7
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.62
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.57
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.51
PRK05560	805	DNA gyrase subunit A; Validated	90.25
PLN02153	341	epithiospecifier protein	90.06
PLN02193	470	nitrile-specifier protein	89.79
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.7
COG4590	733	ABC-type uncharacterized transport system, permeas	89.59
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.41
PLN02193	470	nitrile-specifier protein	89.38
COG4590	733	ABC-type uncharacterized transport system, permeas	89.36
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	89.34
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.31
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	89.06
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.66
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.62
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.47
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.3
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	88.23
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.94
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.86
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	87.86
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.7
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.25
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.25
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	86.93
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.68
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.62
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.03

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.5e-84  Score=576.50  Aligned_cols=460  Identities=62%  Similarity=1.033  Sum_probs=405.8

Q ss_pred             CCCCCCcccHHHHHHHHHHHHHhccCCCCCCCCCCCccchhhhheeeecccccCcccCCccccccccccccCCCCCCCCC
Q 011457            7 DLEPVEPQSLKKLSLKSQKRALDLFSPTHGRLPPPDPESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSS   86 (485)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (485)
                      +.|++++|++++|+|+||||++|||.+++|++|+.|+++.++++++|++.+|+.|.+ +....+....    +. ...|.
T Consensus         1 ~~~~~~~~s~~~l~f~Slkr~~~lF~~~~g~~p~~d~e~~~l~~s~k~~~~yg~v~~-~s~~~~~~~~----~~-~~~~~   74 (460)
T KOG0285|consen    1 ANEEVDKHSVLTLVFKSLKRAHDLFSADHGQPPPLDEESEKLRRSIKMKVEYGGVEP-VSKKGENRKV----EG-EQTPT   74 (460)
T ss_pred             CcchhhhhhhhHHHHHHHHHHHhhcccccCCCCCCChHHHHHHHHHHHhhhcccccc-cccccccccc----cc-ccCCC
Confidence            367899999999999999999999999999999999999999999999999999999 3333231111    11 11122


Q ss_pred             CcccCCCCCCCcchhcccccceEEeCCCCCCCCCccccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcc
Q 011457           87 DVLALPGPEGSRDAQKAGAQNALVVGPSAQPKGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWK  166 (485)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~  166 (485)
                      ++++  +.. +.     +...++.+++.    .......+..+..+...-.+.....+.++.+.+.+..|++|+||.||+
T Consensus        75 ~~l~--~~~-~~-----gs~~a~~~~s~----~~~~~~gs~~~~~i~~~p~a~~~~~~~taL~~k~~~~~~rPeWHapwK  142 (460)
T KOG0285|consen   75 DALA--GSG-SK-----GSEVAITVGSK----LDTKTHGSAKSTSILPAPEAAEEIALETALMEKKASRMPRPEWHAPWK  142 (460)
T ss_pred             cccC--CCC-CC-----CCceeEEeccc----cccccccceeecccccCcchhhhhhhhhhhhhhccccCCCccccCcce
Confidence            2221  111 00     12233333332    111111233333443322222333344577899999999999999999


Q ss_pred             eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      ++++++||.++|+|+++.|.+++|+||+.|++|+|||+.++++..++.||...|..+++++...||++++.|++|++||+
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457          247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK  326 (485)
Q Consensus       247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~  326 (485)
                      +.++.++.|++|-+.|+|++.+|.-+.|++|++|.++++||+++...+..+.+|..+|.++.+.|.++++++|+.|++|+
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr  302 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR  302 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCC
Q 011457          327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG  406 (485)
Q Consensus       327 iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg  406 (485)
                      +||++.|+...++..|+..|++++.+|....|++++.|+|+.|+++.|.++.+ +.+|+..+++++.+.|+++++|+++|
T Consensus       303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G~dng  381 (460)
T KOG0285|consen  303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSGGDNG  381 (460)
T ss_pred             EeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc-cccccceeeeeeeccCceEEEcCCce
Confidence            99999999999999999999999999999999999999999999999999999 68999999999999999999999999


Q ss_pred             cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCCCCCCCCCccCCC
Q 011457          407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPPKDIRRF  485 (485)
Q Consensus       407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~~~~~p~~~~~~~  485 (485)
                      .|.+||+++|..++..+...+|+++..+++|++.+|+..|.+|++|..|++|++|+.++..++|++|+.|+|+...|||
T Consensus       382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~EthPl~w~P~~~~rr~  460 (460)
T KOG0285|consen  382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEETHPLNWKPELLKRRF  460 (460)
T ss_pred             EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCcccCCcCCCCchhhccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999987

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-51  Score=372.30  Aligned_cols=324  Identities=23%  Similarity=0.414  Sum_probs=297.3

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..||.++|.+..|+|++..+++++-|.+++.|....    ..+..+.++|..+|.||+|+|||+.||+|+.||+|++||.
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            468999999999999999999999999999997744    4567788999999999999999999999999999999999


Q ss_pred             CCCceE-EEEcccccCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE
Q 011457          205 AKGTLK-LTLTGHIEQVRGLAVSS-----KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG  278 (485)
Q Consensus       205 ~~~~~~-~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~  278 (485)
                      ++++++ ..+.+|...|++++|.|     ..++|++++.||.|+|||+..+.++..+.+|..+|+|+.|--+ .+|++|+
T Consensus       187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS  265 (480)
T KOG0271|consen  187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGS  265 (480)
T ss_pred             CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecC
Confidence            998765 56899999999999976     4578999999999999999999999999999999999999866 4899999


Q ss_pred             CCCcEEEEECCCCceEEEeccCCccEEEEEEc-----------CCCC-------------------------EEEEEeCC
Q 011457          279 RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR-----------PTDP-------------------------QVVTGSHD  322 (485)
Q Consensus       279 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-----------~~~~-------------------------~l~s~s~d  322 (485)
                      .|++|++|+...|.+...+++|...|+.++.+           |.++                         .|++|+.|
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            99999999999999999999999999999877           2232                         49999999


Q ss_pred             CCEEEEECCC-CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457          323 STIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL  399 (485)
Q Consensus       323 g~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  399 (485)
                      .++.+|+... .+++..+.+|..-|+.+.|+||++++++++-|+ |++|+-.+|+++..+ .+|-..|..++|+.|. +|
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGHv~~VYqvawsaDsRLl  424 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGHVAAVYQVAWSADSRLL  424 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhccceeEEEEeccCccEE
Confidence            9999999765 457888999999999999999999999999988 999999999999886 6788999999999998 99


Q ss_pred             EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      ++|+.|.++++||+++.+....+.        +|...|+++.|+|||.++++|+.|..+++|.
T Consensus       425 VS~SkDsTLKvw~V~tkKl~~DLp--------Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRTKKLKQDLP--------GHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEcCCCceEEEEEeeeeeecccCC--------CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999987766654        6899999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-50  Score=360.47  Aligned_cols=309  Identities=25%  Similarity=0.413  Sum_probs=279.4

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK  242 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~  242 (485)
                      +-.++...+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||+|+
T Consensus       103 pvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  103 PVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             ccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeE-EEecccCCceEEEEEec-----CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE
Q 011457          243 CWDLEQNKVI-RSYHGHLSGVYCLGLHP-----TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       243 iwd~~~~~~~-~~~~~h~~~v~~l~~~~-----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  316 (485)
                      +||.++++++ +.+.+|...|++++|.|     ...+|++++.||.|+|||+..+.++..+.+|+..|+|+.|--+| ++
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-li  261 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LI  261 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eE
Confidence            9999988754 67899999999999987     45699999999999999999999999999999999999998655 99


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEEC-----------CCCC-------------------------EEEE
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH-----------PTED-------------------------CFAS  360 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~-----------p~~~-------------------------~l~~  360 (485)
                      ++|+.|++|++|+...|+....+.+|...|+.++++           |.++                         .+++
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            999999999999999999999999999999999887           2233                         4999


Q ss_pred             EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEE
Q 011457          361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIY  438 (485)
Q Consensus       361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~  438 (485)
                      +++|. +.+|+-...+....-..+|...|+.+.|+||+ ++++++-|..|++||.++|+.+..+.        +|-+.|+
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR--------GHv~~VY  413 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR--------GHVAAVY  413 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--------hccceeE
Confidence            99998 99999876664444467899999999999999 99999999999999999999888876        5888999


Q ss_pred             EEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC--------CCCCCCC
Q 011457          439 ALSYDVTGSRLVTCEADKTIKMWREDETATPETHP--------LNFKPPK  480 (485)
Q Consensus       439 ~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~--------~~~~p~~  480 (485)
                      .++|+.|.++|++|+.|.++++|++.+.......|        ++|+|.-
T Consensus       414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG  463 (480)
T KOG0271|consen  414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG  463 (480)
T ss_pred             EEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence            99999999999999999999999999877655444        4667653

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.4e-47  Score=347.60  Aligned_cols=282  Identities=27%  Similarity=0.463  Sum_probs=270.1

Q ss_pred             ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 011457          172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~  249 (485)
                      .|-+.+|..+.|+++++.|+||+.+|.++||+..+...+.+|.+|.+.|.++.|+|.  +..|++|+.||+|++|++++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            467889999999999999999999999999999999999999999999999999997  568999999999999999999


Q ss_pred             eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                      ..+..+.+|...|..++|||+|++|++++.|.+-++||++++..+....||...|.+++|++||..+++|+.|..-+|||
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC-CC-eEEEEeCCC
Q 011457          330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE-EG-VLATGGDNG  406 (485)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~~dg  406 (485)
                      +++++++..+.+|..+|.++.|+|+|..+++|+.|+ +++||++....+..+ ..|...|+.+.|+| .| +|++++.|+
T Consensus       332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~  410 (459)
T KOG0272|consen  332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDN  410 (459)
T ss_pred             cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCc
Confidence            999999999999999999999999999999999998 999999999887775 78899999999998 44 999999999


Q ss_pred             cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      ++++|.-.+..+++.+.        +|+..|.++.+++++++++|++.|.+|++|.
T Consensus       411 t~kiWs~~~~~~~ksLa--------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  411 TVKIWSTRTWSPLKSLA--------GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceeeecCCCcccchhhc--------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999998888775        6999999999999999999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-43  Score=310.43  Aligned_cols=289  Identities=24%  Similarity=0.400  Sum_probs=268.9

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      .+..++|+||.+.|.++.|++|.+++++++.||.+.|||.-+...++.+.-....|..++|+|.++++++|+-|+...||
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            45669999999999999999999999999999999999999998888888889999999999999999999999999999


Q ss_pred             ECCCC------eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEE
Q 011457          245 DLEQN------KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVV  317 (485)
Q Consensus       245 d~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~  317 (485)
                      ++.+.      ...+.+.+|.+.+.|+.|-+| ..|++++.|.++.+||+++++.+..+.+|.+.|.++.++| +++.++
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence            99855      456778999999999999985 5789999999999999999999999999999999999999 999999


Q ss_pred             EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc-CCcccEEEEEeCC
Q 011457          318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS-QQKTIINSMAVNE  395 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~  395 (485)
                      +|+.|+..++||++.+.++++|.+|...|+++.|.|+|.-|++|++|. .++||++....+..+.. .....|++++|+-
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence            999999999999999999999999999999999999999999999998 99999999888877643 2346799999999


Q ss_pred             CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          396 EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       396 ~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      .| +|++|..|..+.+||.-.++....+.        +|+..|.++..+|||..|+||+.|.+|+||.
T Consensus       284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  284 SGRLLFAGYDDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccEEEeeecCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99 89999999999999998887766654        6999999999999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-45  Score=337.96  Aligned_cols=282  Identities=27%  Similarity=0.455  Sum_probs=269.0

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccC--CCEEEEEeCCCeEEEEE
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHS--NTWFCTGSADRTIKIWD  203 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~--~~~l~tgs~dg~I~iwd  203 (485)
                      .+....|..+.|+.++..++|++....+++|..|.    ...+.+|.||.+.|.++.|+|.  +..+|||+.||+|++|+
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCC----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            35667788899999999999999999999999876    4788999999999999999996  56899999999999999


Q ss_pred             CCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457          204 VAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC  283 (485)
Q Consensus       204 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i  283 (485)
                      +++..++..+.+|...|..++|+|+|++|+|++.|.+-++||++++..+....||...|.+++|++||.++++||.|..-
T Consensus       248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG  327 (459)
T ss_pred             cCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEc
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASAS  362 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~  362 (485)
                      +|||++++.++..+.+|...|.++.|+|+|..|++|+.|++++|||++..+.+.++..|..-|+.+.|+| .|.+|++++
T Consensus       328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 788999999


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      .|+ +++|...++.+++.+ .+|.+.|.++.+++++ .+++++.|.++++|.
T Consensus       408 yD~t~kiWs~~~~~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  408 YDNTVKIWSTRTWSPLKSL-AGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCcceeeecCCCcccchhh-cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            988 999999999988885 7899999999999999 999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-43  Score=305.11  Aligned_cols=297  Identities=23%  Similarity=0.396  Sum_probs=263.7

Q ss_pred             cceEEEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECC-----CCceEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457          165 WKCYRVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVA-----KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  238 (485)
                      ..+..++++|+++|+.++..+. .+.+++++.|.++.+|++.     .|..++.+.||...|..+..++++++.++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            3456789999999999999886 5689999999999999975     456788999999999999999999999999999


Q ss_pred             CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC--CccEEEEEEcCC--CC
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH--DNTVCSVFTRPT--DP  314 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~--~~  314 (485)
                      +++++||+.+++..+.|.+|...|.+++|++|...+++|+.|.+|++|++... +..++..+  .+.|.|+.|+|+  .+
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            99999999999999999999999999999999999999999999999998754 44444433  789999999998  78


Q ss_pred             EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEe
Q 011457          315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAV  393 (485)
Q Consensus       315 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~  393 (485)
                      ++++++.|++|++||+++.+....+.+|.+.++.++++|||.+.++|+.++ +.+||++.++.++.+  .+...|++++|
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~f  241 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCF  241 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEe
Confidence            999999999999999999999999999999999999999999999999998 999999999998765  67889999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccC-CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          394 NEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG-SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       394 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      +|+.+.++...+..|+|||+.++..+..+..-.... .........+++|++||..|++|..|+.|++|.+.
T Consensus       242 spnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  242 SPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            999977777777789999999998888776433221 22234457889999999999999999999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-40  Score=288.68  Aligned_cols=287  Identities=22%  Similarity=0.390  Sum_probs=253.9

Q ss_pred             CCCCcceeecccCCC-CcccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          126 SGKSSAIVSTSASSE-RNLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~-~~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      .+|.+.|...+..+. ...+.+++.|+.+..|.....+.. ..+++.+.||...|..++.++||+++++++.|+++++||
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD   91 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD   91 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence            467788877766655 457788899999999987665443 356889999999999999999999999999999999999


Q ss_pred             CCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--cCCceEEEEEecC--CCEEEEEEC
Q 011457          204 VAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--HLSGVYCLGLHPT--IDILLTGGR  279 (485)
Q Consensus       204 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~--~~~l~sg~~  279 (485)
                      +.+++....|.+|...|.+++|++|.+.+++|+.|++|++||+.. .+..++..  +.+.|+|+.|+|+  ..+|++++.
T Consensus        92 l~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~  170 (315)
T KOG0279|consen   92 LATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW  170 (315)
T ss_pred             ecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence            999999999999999999999999999999999999999999874 44444433  3789999999998  669999999


Q ss_pred             CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       280 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      |++|++||+++.+....+.+|.+.++.+.++|||..+++|+.||.+.+||++.++.+..+. +...|.+++|+|+..+|+
T Consensus       171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~  249 (315)
T KOG0279|consen  171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLC  249 (315)
T ss_pred             CceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEe
Confidence            9999999999999999999999999999999999999999999999999999999988775 578899999999999999


Q ss_pred             EEcCCCEEEEECCCCceeeeeccC--------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          360 SASAENIKKFNLPKGEFLHNMLSQ--------QKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       360 ~~~~~~i~i~d~~~~~~~~~~~~~--------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      .+....|+|||+.++..+..+...        ......+++|+++| .|++|..|+.|++|.+.
T Consensus       250 ~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  250 AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            999999999999998877665321        13456788999999 99999999999999864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-39  Score=305.77  Aligned_cols=328  Identities=20%  Similarity=0.323  Sum_probs=280.4

Q ss_pred             CCCCCcceeecccCCCCcc-cccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          125 ASGKSSAIVSTSASSERNL-STSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~-~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      ..||+..|.++.+-|.+++ ++|++.|..+..+.-    +|||.-.+++.|..-|+|+.|+|||.+|+|.+.||+|.+||
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG----PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD  218 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEG----PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD  218 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeC----CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence            4689999999999999984 789999999999866    56999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE--------------------------
Q 011457          204 VAKGTLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS--------------------------  254 (485)
Q Consensus       204 ~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~--------------------------  254 (485)
                      -.+++.+..+.   +|.+.|.+++|+||+..|++++.|.+++|||+.+++++++                          
T Consensus       219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl  298 (603)
T KOG0318|consen  219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL  298 (603)
T ss_pred             CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence            99999999998   8999999999999999999999999999999987665433                          


Q ss_pred             -----------------ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-----------EE----------
Q 011457          255 -----------------YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-----------FA----------  296 (485)
Q Consensus       255 -----------------~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-----------~~----------  296 (485)
                                       +.+|...|+++..++++++|++|+.||.|.-||..++..-           ..          
T Consensus       299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~  378 (603)
T KOG0318|consen  299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF  378 (603)
T ss_pred             CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence                             3469999999999999999999999999999998653211           00          


Q ss_pred             ----------------------------------------------------eccC--------CccEEEEEEcCCCCEE
Q 011457          297 ----------------------------------------------------LAGH--------DNTVCSVFTRPTDPQV  316 (485)
Q Consensus       297 ----------------------------------------------------~~~~--------~~~v~~l~~~~~~~~l  316 (485)
                                                                          ++.+        .-...+++++|++..+
T Consensus       379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV  458 (603)
T ss_pred             EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence                                                                0000        0112577889999999


Q ss_pred             EEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEe
Q 011457          317 VTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAV  393 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~  393 (485)
                      ++|+.||.|++|.+.....  ...+..|..+|++++++||+.+|+++...+ +.+||..+.+.......-|...|+|++|
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW  538 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAW  538 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence            9999999999999987543  335677899999999999999999998887 9999999998866666678999999999


Q ss_pred             CCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          394 NEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       394 ~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      +|++ ++++|+-|..|.||+++.....-.++       ..|...|+.+.|- +...|++.|.|-.|++|++.
T Consensus       539 sP~n~~vATGSlDt~Viiysv~kP~~~i~ik-------nAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-------NAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             CCCceEEEeccccceEEEEEccChhhheEec-------cccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence            9999 99999999999999998654332222       2466779999996 45689999999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.4e-40  Score=302.89  Aligned_cols=326  Identities=24%  Similarity=0.379  Sum_probs=289.8

Q ss_pred             CCCcceeecccCCCCc-ccccccccCCCCCCCCCCCCCCcceEEEE------ec----CCcceEEEEEccCCCEEEEEeC
Q 011457          127 GKSSAIVSTSASSERN-LSTSAIMERIPSKWPRPEWHAPWKCYRVI------SG----HLGWVRSVAFDHSNTWFCTGSA  195 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~~~~~~~~~~~~~l------~~----H~~~V~~l~~sp~~~~l~tgs~  195 (485)
                      +|...|..+.++|... ++++++.+...+.|..++..........|      .+    -+..|++++|+.+|.+||+|+.
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            4888899999999887 89999999999999887611111111111      12    2357999999999999999999


Q ss_pred             CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE
Q 011457          196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL  275 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  275 (485)
                      ||.++||+. .|.++.++..|.++|.++.|+.+|+||++++.|+++.+||..++...+.+.-|..+-..+.|-.+ +.++
T Consensus       256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~  333 (524)
T KOG0273|consen  256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFA  333 (524)
T ss_pred             CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEe
Confidence            999999994 68889999999999999999999999999999999999999999999999988888788899865 5789


Q ss_pred             EEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC
Q 011457          276 TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE  355 (485)
Q Consensus       276 sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~  355 (485)
                      +++.|+.|+|+.+....++.++.+|.+.|.++.|.|.+.+|++++.|++++||..........+..|...|..+.|+|.|
T Consensus       334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g  413 (524)
T KOG0273|consen  334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG  413 (524)
T ss_pred             ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999965


Q ss_pred             ---------CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccccee
Q 011457          356 ---------DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       356 ---------~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                               ..+++++.++ +++||+..+.++..+ ..|..+|.+++|+|++ ++++|+.||.|.+|+.++++.++... 
T Consensus       414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-  491 (524)
T KOG0273|consen  414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-  491 (524)
T ss_pred             CccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-
Confidence                     4677777766 999999999999996 6788999999999999 99999999999999999998887664 


Q ss_pred             eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          425 IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       425 ~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                              ....|+.++|+.+|.+|..+-.||.+++-|+.
T Consensus       492 --------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  492 --------GTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             --------CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence                    46679999999999999999999999998864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.6e-39  Score=278.84  Aligned_cols=292  Identities=23%  Similarity=0.380  Sum_probs=248.4

Q ss_pred             ceEEEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCCC---ceEEEE-cccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457          166 KCYRVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKG---TLKLTL-TGHIEQVRGLAVSSKHTYMFSAGDDKQ  240 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~---~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~  240 (485)
                      ..++.+++|.+.|..++|+|. |..||+|+.|+.|+||+...+   .+...+ .+|...|++++|+|.|++|++++.|.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            457889999999999999998 889999999999999998853   334333 469999999999999999999999999


Q ss_pred             EEEEECCCC--eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC---ceEEEeccCCccEEEEEEcCCCCE
Q 011457          241 VKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK---MQIFALAGHDNTVCSVFTRPTDPQ  315 (485)
Q Consensus       241 V~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~  315 (485)
                      +.||.-..+  +++..+.||.+.|.|++|+++|++|+++++|..|-||.+..+   +++..++.|...|..+.|+|...+
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            999976544  789999999999999999999999999999999999999743   567788999999999999999999


Q ss_pred             EEEEeCCCCEEEEECC---CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457          316 VVTGSHDSTIKFWDLR---YGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       316 l~s~s~dg~I~iwd~~---~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      |++++.|.+|++|+-.   ...++.++.+|...|.+++|++.|..++++++++ +++|....     .+...|...+..+
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v  239 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDV  239 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEee
Confidence            9999999999999766   3467899999999999999999999999999998 99998652     2344566778889


Q ss_pred             EeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC-CCEEEEEECCCcEEEecCC
Q 011457          392 AVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT-GSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       392 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .|. ++.|++++.|+.|++|.-..+-.-..+... ......|+..|+++.|+|. .++|++|+.||.|++|.+.
T Consensus       240 ~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  240 PWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eec-ccceEeccCCCEEEEEEecCCCCCchHHHH-HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            999 789999999999999986643111111111 1112357789999999994 7899999999999999874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.9e-39  Score=274.45  Aligned_cols=283  Identities=19%  Similarity=0.367  Sum_probs=244.4

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEecccCCceEEE
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK--VIRSYHGHLSGVYCL  265 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~--~~~~~~~h~~~v~~l  265 (485)
                      -+|++++.|.+|++|...+|.+..++....+.|+.+.+.|++.+|++++. -.|++||+.++.  ++.+|.+|...|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            47999999999999999999999999988899999999999999999976 579999998875  689999999999999


Q ss_pred             EEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCC
Q 011457          266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKK  344 (485)
Q Consensus       266 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~  344 (485)
                      .|..+|+.+++|+.||+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+....+...+.. ...
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            999999999999999999999999976666665 789999999999999999999999999999998877666543 446


Q ss_pred             ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee-----ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457          345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM-----LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                      +|.++...|+|.+++++...+ .++|++........+     +..|...+..+.++|++ +|++++.|.+++||+.++. 
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-  247 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-  247 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-
Confidence            899999999999999988776 999999775433222     35677889999999999 9999999999999998876 


Q ss_pred             ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCCCCCCCC
Q 011457          418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKPP  479 (485)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~~~~~p~  479 (485)
                       +.....     ..+|...+..++||.||.||+||+.|+.+++|++..++.....+-..++.
T Consensus       248 -~kle~~-----l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~  303 (311)
T KOG0315|consen  248 -FKLELV-----LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA  303 (311)
T ss_pred             -eeeEEE-----eecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence             211111     12577889999999999999999999999999999998776665544443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.4e-39  Score=281.16  Aligned_cols=282  Identities=21%  Similarity=0.386  Sum_probs=258.1

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..||...|.+..++++.+.+.+++.|..+.+|+.-    .-...+.+.--..+|..++|+|.|+++|.|+-|+...||++
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~----TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSF----TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEcc----cccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            35788999999999999999999999999999652    23445667777899999999999999999999999999999


Q ss_pred             CCC------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEE
Q 011457          205 AKG------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTG  277 (485)
Q Consensus       205 ~~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg  277 (485)
                      .+.      .....+.+|.+.+.|+.|-+| ..|++++.|.+..+||+++++.+..|.+|.+.|.+++++| +++.+++|
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg  205 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG  205 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence            855      355678999999999999875 5689999999999999999999999999999999999999 89999999


Q ss_pred             ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--CCceEEEEECCCC
Q 011457          278 GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTE  355 (485)
Q Consensus       278 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~  355 (485)
                      +.|+..++||++.+.+++.|.+|+..|.++.|.|+|.-|++|+.|++.++||++..+.+..+...  ..+|++++|+..|
T Consensus       206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG  285 (343)
T KOG0286|consen  206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG  285 (343)
T ss_pred             ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence            99999999999999999999999999999999999999999999999999999999888887643  3589999999999


Q ss_pred             CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          356 DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      ++|.+|..+. +.+||.-+++....+ .+|+..|+|+..+||| .+++|+.|..++||.
T Consensus       286 RlLfagy~d~~c~vWDtlk~e~vg~L-~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  286 RLLFAGYDDFTCNVWDTLKGERVGVL-AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cEEEeeecCCceeEeeccccceEEEe-eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999987775 999999999988775 6899999999999999 999999999999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-39  Score=293.53  Aligned_cols=293  Identities=24%  Similarity=0.417  Sum_probs=274.4

Q ss_pred             CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457          162 HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV  241 (485)
Q Consensus       162 ~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V  241 (485)
                      -+++.+...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|.+.|.++.|+..|.+|++++.|-.+
T Consensus        95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen   95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA  174 (406)
T ss_pred             CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence            34446677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCC-CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457          242 KCWDLEQ-NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       242 ~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      ++||+++ .++++.+.+|...|.++.|-|.|++|+++++|.+|+.|++.++.++.++.+|...|..+..+.||.++++++
T Consensus       175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s  254 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS  254 (406)
T ss_pred             hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence            9999987 578888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEECCCCeEEeEeccCCCceEEEEECCC---------------CCEEEEEcCCC-EEEEECCCCceeeeeccCC
Q 011457          321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT---------------EDCFASASAEN-IKKFNLPKGEFLHNMLSQQ  384 (485)
Q Consensus       321 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~---------------~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~  384 (485)
                      .|.+|++|-+.++++...++.|+-+|.+++|-|.               +.++.+++.|+ |++||+.++.++.++ .+|
T Consensus       255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-~gh  333 (406)
T KOG0295|consen  255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-VGH  333 (406)
T ss_pred             CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE-ecc
Confidence            9999999999999999999999999999999763               25888999998 999999999999986 788


Q ss_pred             cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          385 KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       385 ~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      ...|..++|+|.| +|+++.+|+++++||++++++...+.        .|+.-|+++.|+.+-.+++||+-|.++++|..
T Consensus       334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--------CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999 99999999999999999998887765        37788999999999999999999999999964

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.2e-37  Score=292.46  Aligned_cols=286  Identities=36%  Similarity=0.631  Sum_probs=258.3

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      ++.+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            34577999999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                      +++.+..+..|...+.++.|+++++++++++.||.|.+||+++++....+..|...+.++.|+|++.++++++.||.|++
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            98888889889999999999999888888888999999999999889889889999999999999888888888999999


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN  405 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d  405 (485)
                      ||++.++.+..+..+...+.++.|+|++..+++++.++ +.+||+..++.+..+ ..+...+.++.+++++ ++++++.+
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-hhcCCceEEEEEcCCCcEEEEEcCC
Confidence            99999998888888888999999999998888877665 999999988877664 3566689999999988 66666669


Q ss_pred             CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          406 GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       406 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      |.|++||+.+++....+.        .+...|.+++|++++++|++++.||.|++|+
T Consensus       241 ~~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         241 GTIRVWDLRTGECVQTLS--------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCceeEEEcc--------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999999876655544        3567899999999999999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.6e-38  Score=314.26  Aligned_cols=295  Identities=27%  Similarity=0.507  Sum_probs=264.2

Q ss_pred             CCCcceEEEEecC-CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457          162 HAPWKCYRVISGH-LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       162 ~~~~~~~~~l~~H-~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  238 (485)
                      ...|.....+.+| ...|.++.|+++|++|++++.|+.+++|+..+.+  ....+.+|...|.+++|+|++.++++++.|
T Consensus       145 ~~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D  224 (456)
T KOG0266|consen  145 SRVFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD  224 (456)
T ss_pred             cccceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC
Confidence            3445666777665 8899999999999999999999999999998877  777888999999999999999999999999


Q ss_pred             CcEEEEEC-CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457          239 KQVKCWDL-EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       239 g~V~iwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  317 (485)
                      ++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|.+.|++++|++++.+|+
T Consensus       225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence            99999999 55689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCEEEEECCCCe--EEeEeccCCCc--eEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc--cEEE
Q 011457          318 TGSHDSTIKFWDLRYGK--TMLTLTHHKKS--VRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT--IINS  390 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~--~~~~~~~~~~~--v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~--~i~~  390 (485)
                      +++.|+.|++||+.++.  +...+..+...  ++++.|+|++.+++++..++ +++||+..+.....+..+...  .+..
T Consensus       305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~  384 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS  384 (456)
T ss_pred             EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec
Confidence            99999999999999998  55666665554  99999999999999999996 999999999998887665554  3444


Q ss_pred             EEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCC-CccEEEEEEccCCCEEEEEE--CCCcEEEecCC
Q 011457          391 MAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDS-EAGIYALSYDVTGSRLVTCE--ADKTIKMWRED  464 (485)
Q Consensus       391 ~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~L~s~~--~Dg~I~iW~~~  464 (485)
                      ...++.+ ++++|+.|+.|++||..++..+..+.        +| ...+..+.+++..+++++++  .|+.|++|..+
T Consensus       385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~--------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE--------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccccCCCCeEEEEeCCceEEEEeCCccchhhhhc--------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            4556667 99999999999999999987777665        35 77899999999999999998  79999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.6e-39  Score=296.02  Aligned_cols=283  Identities=24%  Similarity=0.409  Sum_probs=255.8

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      -...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|.+.|+++.|++++.++++|+.+|.|++|+..-+ .++
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk  173 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK  173 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence            3467999999999999999999999999998666666667889999999999999999999999999999997644 444


Q ss_pred             Eeccc-CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 011457          254 SYHGH-LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       254 ~~~~h-~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~  332 (485)
                      .+..| ...|.+++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|...++++|+.|..|++||.++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            55545 49999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEE
Q 011457          333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLW  409 (485)
Q Consensus       333 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~  409 (485)
                      +.++.++..|+..|..+.|+|++++|++++.|. +++||+++.+.+..+ .+|...+.++.|+|-.  +|.+|+.||.|.
T Consensus       254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv  332 (464)
T KOG0284|consen  254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVV  332 (464)
T ss_pred             cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-hcchhhheeeccccccccceeeccCCCceE
Confidence            999999999999999999999999999999998 999999977777764 6788899999999966  999999999999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      .|.+...+.+..+.       ..|...|++++|+|-|..|++|+.|.++++|.-..
T Consensus       333 h~~v~~~~p~~~i~-------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  333 HWVVGLEEPLGEIP-------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             EEeccccccccCCC-------cccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence            99998555554443       36899999999999999999999999999997654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-37  Score=301.14  Aligned_cols=339  Identities=17%  Similarity=0.316  Sum_probs=294.5

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCC-CeEEEEECC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD-RTIKIWDVA  205 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d-g~I~iwd~~  205 (485)
                      ..+..+.+..+++.-++++++.......++..|+    +.+++.+.--...|..++|+..|++||.|+.. |.+.||+.+
T Consensus       263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~----f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq  338 (893)
T KOG0291|consen  263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD----FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ  338 (893)
T ss_pred             ccccceeeeeccCCceEEEEEecCCeeEEEecCC----ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence            3446677888999999999988888777777665    78999999888999999999999999999875 899999999


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      +...+...++|...+++++++|||+++++|++||.|+|||..++-|+.+|..|.+.|+.+.|+..++.+++.+.||+|+.
T Consensus       339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCceEEEeccCC-ccEEEEEEcCCCCEEEEEeCCC-CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC
Q 011457          286 WDIRTKMQIFALAGHD-NTVCSVFTRPTDPQVVTGSHDS-TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                      ||+...++.+++.... -...|++..|.|..+++|+.|. .|.+|++.+|+.+..+.+|+++|.+++|+|.+..|++++.
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW  498 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence            9999999999987533 3567889999999999999887 5999999999999999999999999999999999999999


Q ss_pred             CC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeecc------------C
Q 011457          364 EN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQP------------G  429 (485)
Q Consensus       364 ~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~------------~  429 (485)
                      |+ |++||+-......+. ......+..++|.|+| .|++++-||.|.+||.+.+.....+......            .
T Consensus       499 DkTVRiW~if~s~~~vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~  577 (893)
T KOG0291|consen  499 DKTVRIWDIFSSSGTVET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAE  577 (893)
T ss_pred             cceEEEEEeeccCceeee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehh
Confidence            98 999998655333322 2345568899999999 9999999999999999877665443221110            0


Q ss_pred             CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      ........+.+++++||.++++||..+.|+||++.++-...
T Consensus       578 ~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  578 NSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             hcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence            11234568999999999999999999999999998876443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.9e-39  Score=300.51  Aligned_cols=291  Identities=24%  Similarity=0.448  Sum_probs=257.4

Q ss_pred             CCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457          163 APWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAK-GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ  240 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  240 (485)
                      .|-+.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.++.++.+|..+|.+++|+++|..+++++.|+.
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            47788999999999999999999 899999999999999999876 8899999999999999999999999999999999


Q ss_pred             EEEEECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457          241 VKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       241 V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      |++||+++|+++..++ ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+++.++++.
T Consensus       282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999999999999997 55678999999998 899999999999999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee--eeeccCCc--ccEEEEEe
Q 011457          320 SHDSTIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL--HNMLSQQK--TIINSMAV  393 (485)
Q Consensus       320 s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~--~~~~~~~~--~~i~~~~~  393 (485)
                      +.|++++||+.+....+..+. .......++..+|++.++++-+.++ |.+|.+...-..  .+...+|.  +.-..+.|
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            999999999999877765443 3345678999999999999999998 888876432211  11223333  45667899


Q ss_pred             CCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CEEEEEECCCcEEEec
Q 011457          394 NEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SRLVTCEADKTIKMWR  462 (485)
Q Consensus       394 ~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~L~s~~~Dg~I~iW~  462 (485)
                      +||| +|++|+.||.+.+||+++-+.+..++.        |...+..+.|+|.. ..+||++.||.|++|+
T Consensus       441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--------h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--------HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCCCeEEeecCCccEEEeechhhhhhhcccc--------CCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999 999999999999999999988887764        77889999999964 5799999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.9e-37  Score=272.52  Aligned_cols=287  Identities=24%  Similarity=0.419  Sum_probs=250.7

Q ss_pred             eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC-CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV-AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~-~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      ++..+.+|.+.|..+.|+|+|.+||||+.|..|.+|++ ...+-...+++|.+.|..+.|.++++.|++++.|.+|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            34556799999999999999999999999999999994 45566778899999999999999999999999999999999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                      .++|+.++.+++|.+-|..+.-..-|. ++.+|+.||++++||++++..++++. ..-.++++.|..++..+++|+-|+.
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence            999999999999999999998554444 67788999999999999999888876 4678999999999999999999999


Q ss_pred             EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc----eeeeeccC-C--cccEEEEEeCCC
Q 011457          325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE----FLHNMLSQ-Q--KTIINSMAVNEE  396 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~----~~~~~~~~-~--~~~i~~~~~~~~  396 (485)
                      |++||++.+.....+.+|..+|+.+..+++|.++.+-+.++ +++||.+...    ++..+..+ |  ......++|+|+
T Consensus       198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence            99999999999999999999999999999999999999988 9999986532    23333221 1  233556789999


Q ss_pred             C-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          397 G-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       397 ~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      + .+.+|+.|..+++||..+...+..+.        +|.+.|+++.|+|....|.+++.|++|++=.
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lyklp--------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKLP--------GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEcC--------CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            9 89999999999999988766555443        6889999999999999999999999998743

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.4e-37  Score=276.76  Aligned_cols=328  Identities=16%  Similarity=0.239  Sum_probs=289.2

Q ss_pred             ccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457          123 VGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW  202 (485)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw  202 (485)
                      +.+..|...+.+++.+|+.++.+|++-|....+|....-.    ....+.+|.+.|+|+.|+.+|.+||||+.+|.|+||
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            4567899999999999999999999999999999875533    566788999999999999999999999999999999


Q ss_pred             ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      +..++.....+...-+.|.=+.|+|.+..|+.|+.||.|-+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            99999999999877788999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             EEEEECCCCceEEEeccC-CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--------CCCceEEE---E
Q 011457          283 CRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--------HKKSVRAM---A  350 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--------~~~~v~~l---~  350 (485)
                      |++||+.++.+++.+.+. .....++.++..+..++.|+.++.+++-+..+++.+....+        +...+.++   .
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~  293 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP  293 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence            999999999999988743 34677888888999999999999999999999988877662        33334444   4


Q ss_pred             ECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccC
Q 011457          351 LHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG  429 (485)
Q Consensus       351 ~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~  429 (485)
                      ++..-.+.++++-++ |.+||+...+....  ..|...|..+.|.++.+|++++.||.|+.||.++|+....+.      
T Consensus       294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~--c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~------  365 (399)
T KOG0296|consen  294 SSSKLPLAACGSVDGTIAIYDLAASTLRHI--CEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYT------  365 (399)
T ss_pred             cccccchhhcccccceEEEEecccchhhee--ccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEe------
Confidence            455566788888887 99999988776554  356666888888886699999999999999999999887764      


Q ss_pred             CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                        +|...|.+++++|++++++|++.|++.+||++.
T Consensus       366 --GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  366 --GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             --cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence              689999999999999999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.2e-37  Score=305.84  Aligned_cols=252  Identities=27%  Similarity=0.515  Sum_probs=233.8

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC-------------------------------ceEEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-------------------------------TLKLT  212 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~-------------------------------~~~~~  212 (485)
                      |--++-++..-...++|..|++++.+||.|-.|..|++|.+...                               ....+
T Consensus       367 pSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  367 PSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             CcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence            34455556556678999999999999999999999999998631                               12345


Q ss_pred             EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      +.+|.++|..+.|+|+.++|++|++|++||+|.+.+..++-.+++|..+|+++.|+|.|-++++++.|++.++|......
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457          293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL  371 (485)
Q Consensus       293 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~  371 (485)
                      +.+.+.+|.+.|.|+.|+|+..++++||.|.++++||+.+|..++.|.+|.++|.+++|+|+|.+|++|+.++ |.+||+
T Consensus       527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl  606 (707)
T KOG0263|consen  527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL  606 (707)
T ss_pred             chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          372 PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       372 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      .+++.+..+.. |.+.|.++.|+.+| .|++|+.|.+|++||+..-
T Consensus       607 ~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  607 ANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CCCcchhhhhc-ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999988754 59999999999999 9999999999999998654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.4e-36  Score=283.44  Aligned_cols=334  Identities=17%  Similarity=0.281  Sum_probs=263.0

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCE----------------
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTW----------------  189 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~----------------  189 (485)
                      ..|+..+.-..++|.|.+++++-....+++|.....  ..-+...++.-.++|..|+|+.++++                
T Consensus        56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~--~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK--EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc--ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            457777777789999999999999999999975441  12222333334444444444444444                


Q ss_pred             -----------------------------EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457          190 -----------------------------FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ  240 (485)
Q Consensus       190 -----------------------------l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  240 (485)
                                                   ++||+.|++|-+|+-.-.+...++..|...|+|+.|+|||.++++++.||+
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence                                         455555555555554445556667789999999999999999999999999


Q ss_pred             EEEEECCCCeeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-----------------------
Q 011457          241 VKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-----------------------  294 (485)
Q Consensus       241 V~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-----------------------  294 (485)
                      |.|||-.+++.+..+.   +|.+.|++++|+||+..+++++.|.+++|||+.+.+++                       
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence            9999999999999997   89999999999999999999999999999999764332                       


Q ss_pred             --------------------EEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE------------------
Q 011457          295 --------------------FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM------------------  336 (485)
Q Consensus       295 --------------------~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~------------------  336 (485)
                                          ..+.+|...|+++..++++.+|++|+.||.|.-||..++..-                  
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE  373 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence                                234679999999999999999999999999999998654110                  


Q ss_pred             -------------e------------------------------------------EeccC--------CCceEEEEECC
Q 011457          337 -------------L------------------------------------------TLTHH--------KKSVRAMALHP  353 (485)
Q Consensus       337 -------------~------------------------------------------~~~~~--------~~~v~~l~~~p  353 (485)
                                   +                                          .+..+        .-...+++++|
T Consensus       374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~  453 (603)
T KOG0318|consen  374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP  453 (603)
T ss_pred             CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence                         0                                          00000        11245788999


Q ss_pred             CCCEEEEEcCCC-EEEEECCCCceeee-eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCC
Q 011457          354 TEDCFASASAEN-IKKFNLPKGEFLHN-MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS  430 (485)
Q Consensus       354 ~~~~l~~~~~~~-i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  430 (485)
                      ++..++.|+.|+ +++|.+..++.... ....|.+.|++++++|++ +|++|...+.+.+||+.+.+.....-       
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-------  526 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-------  526 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-------
Confidence            999999999987 99999988764433 456789999999999999 99999999999999999877622221       


Q ss_pred             CCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          431 LDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       431 ~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      .-|.+.|.+++|+|+..++|||+-|-.|.||+++.+..
T Consensus       527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK  564 (603)
T ss_pred             eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence            13788999999999999999999999999999987664

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=260.61  Aligned_cols=276  Identities=21%  Similarity=0.355  Sum_probs=246.7

Q ss_pred             cccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccC
Q 011457          142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQ  219 (485)
Q Consensus       142 ~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~  219 (485)
                      -++++++-|.+++.|..    ...+++++++.-.+.|+.+.+.|+++.||+++. -.|++||+.++.  ++.++.+|...
T Consensus        11 viLvsA~YDhTIRfWqa----~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQA----LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN   85 (311)
T ss_pred             eEEEeccCcceeeeeeh----hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCc
Confidence            46889999999999965    458999999988899999999999999999976 579999998875  58899999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc
Q 011457          220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG  299 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  299 (485)
                      |+++.|..+|+.+++|++||+++|||++...+-+.|+ |.++|+++..+|+...|++|..+|.|++||+.+..+...+..
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP  164 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence            9999999999999999999999999999977777776 889999999999999999999999999999998877666543


Q ss_pred             -CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457          300 -HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL  371 (485)
Q Consensus       300 -~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~  371 (485)
                       ....|.++...|+|.+++.+...|..++|++-..      +++..+..|.+-+..+.++|++++|++++.+. +++|+.
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence             3468999999999999999999999999998754      45667888999999999999999999999998 999999


Q ss_pred             CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccce
Q 011457          372 PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       372 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      .+.-.+...+.++...+..++|+.++ +|++|+.|+.+++|++..++.+...+
T Consensus       245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence            88833444467788899999999999 99999999999999999998777665

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-36  Score=264.31  Aligned_cols=283  Identities=26%  Similarity=0.443  Sum_probs=244.3

Q ss_pred             CCCCCcceeecccCCC-CcccccccccCCCCCCCCCCCCCCcceEEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457          125 ASGKSSAIVSTSASSE-RNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIW  202 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~-~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw  202 (485)
                      .++|.+.++..+++|- |.++++++.|+.+++|.... ...|.+..+|. +|+..|++++|+|.|++||+++.|.++.||
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw   88 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW   88 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence            4578889999999998 88999999999999999876 55688888886 899999999999999999999999999999


Q ss_pred             ECCCC--ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEecccCCceEEEEEecCCCEEEEE
Q 011457          203 DVAKG--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTG  277 (485)
Q Consensus       203 d~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg  277 (485)
                      .-..+  +++.++.||.+.|.|++|+++|+|||+|+.|+.|-||.+..+   +++..+++|...|..+.|||...+|+++
T Consensus        89 ~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~  168 (312)
T KOG0645|consen   89 KKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC  168 (312)
T ss_pred             ecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence            86644  678899999999999999999999999999999999998744   5788889999999999999999999999


Q ss_pred             ECCCcEEEEECC---CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC
Q 011457          278 GRDSVCRVWDIR---TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT  354 (485)
Q Consensus       278 ~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  354 (485)
                      ++|.+|++|+-.   ...++.++.+|.+.|.++.|++.|..|++++.|++++||-..+.-.    ..|...+..+.|.  
T Consensus       169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--  242 (312)
T KOG0645|consen  169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--  242 (312)
T ss_pred             ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--
Confidence            999999999876   4568999999999999999999999999999999999998662211    2356789999998  


Q ss_pred             CCEEEEEcCCC-EEEEECCCC------ceeeeeccCCcccEEEEEeCCC--CeEEEEeCCCcEEEEeCC
Q 011457          355 EDCFASASAEN-IKKFNLPKG------EFLHNMLSQQKTIINSMAVNEE--GVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       355 ~~~l~~~~~~~-i~i~d~~~~------~~~~~~~~~~~~~i~~~~~~~~--~~l~sg~~dg~I~iwd~~  414 (485)
                      ...|++++.|. |++|.....      +.+......|...|+++.|+|.  +.|++|++||.|++|.+.
T Consensus       243 ~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  243 NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            55677776666 888866532      2233334567779999999994  499999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-36  Score=291.64  Aligned_cols=340  Identities=16%  Similarity=0.297  Sum_probs=297.1

Q ss_pred             ccccCCCCCcceeecccCCCCcccccccccCCCCCCCCC---C--CC------------------C-----CcceE--EE
Q 011457          121 NNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRP---E--WH------------------A-----PWKCY--RV  170 (485)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~---~--~~------------------~-----~~~~~--~~  170 (485)
                      ......+|++.|+++-|..+..-+.|-+.|..+..|.-.   .  +.                  .     -|...  .-
T Consensus       181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~  260 (893)
T KOG0291|consen  181 FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY  260 (893)
T ss_pred             ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence            345678999999999999998888999999999999543   0  00                  0     11111  12


Q ss_pred             EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-KQVKCWDLEQN  249 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~V~iwd~~~~  249 (485)
                      +......|+|.+|++..+.|++|-..|...+|.+....+++.+.-....|..++|+..|..|+.|+.. |++-||+..+.
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            22334789999999999999999999999999999999999998888999999999999999998754 89999999999


Q ss_pred             eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                      ..+-..++|...+.+++++|||+++++|+.||.|+|||..++-|..++..|++.|+.+.|+..++.+++.+-||+|+.||
T Consensus       341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEeEeccCC-CceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457          330 LRYGKTMLTLTHHK-KSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN  405 (485)
Q Consensus       330 ~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d  405 (485)
                      +...+..+++.... ....+++..|.|.++++|+.+.  |.+|++.+|+.+.. +.+|.++|.+++|++.+ .|++|+.|
T Consensus       421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-LsGHEgPVs~l~f~~~~~~LaS~SWD  499 (893)
T KOG0291|consen  421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-LSGHEGPVSGLSFSPDGSLLASGSWD  499 (893)
T ss_pred             ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh-hcCCCCcceeeEEccccCeEEecccc
Confidence            99999999887654 4678999999999999999997  99999999998766 58999999999999999 99999999


Q ss_pred             CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          406 GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       406 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      .+|++||+-........        +.....+..++|.|+|+.|+++..||.|.+||.......
T Consensus       500 kTVRiW~if~s~~~vEt--------l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  500 KTVRIWDIFSSSGTVET--------LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV  555 (893)
T ss_pred             ceEEEEEeeccCceeee--------EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence            99999998654221111        234567999999999999999999999999999887654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.6e-37  Score=305.16  Aligned_cols=246  Identities=23%  Similarity=0.475  Sum_probs=229.2

Q ss_pred             CcceeecccCCCCcccccccccCCCCCCCCCCC---------------------------CCCcceEEEEecCCcceEEE
Q 011457          129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEW---------------------------HAPWKCYRVISGHLGWVRSV  181 (485)
Q Consensus       129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~---------------------------~~~~~~~~~l~~H~~~V~~l  181 (485)
                      ...+.++.++.++.++|.+..|..+.+|...+.                           ...-...+++.||.++|..+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            345677889999999999999999999975420                           11223456799999999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc
Q 011457          182 AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG  261 (485)
Q Consensus       182 ~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~  261 (485)
                      .|+|+.++|++++.|++||+|.+.+......+.||..+|.++.|+|.|-|+||++.|++.++|.......++.+.+|.+.
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD  537 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD  537 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc
Q 011457          262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH  341 (485)
Q Consensus       262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~  341 (485)
                      |.|+.|||+.+++++|+.|.+|++||+.+|..++.+.||.++|.+++|+|+|.+|++|+.||.|.+||+.+++.+..+.+
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~  617 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG  617 (707)
T ss_pred             cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC
Q 011457          342 HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG  374 (485)
Q Consensus       342 ~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~  374 (485)
                      |.+.|.++.|+.+|..|++++.|+ |++||+..-
T Consensus       618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999999999999998 999998653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.3e-37  Score=299.04  Aligned_cols=328  Identities=22%  Similarity=0.389  Sum_probs=281.9

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC--EEEEEeCCCeEEEEEC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT--WFCTGSADRTIKIWDV  204 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~--~l~tgs~dg~I~iwd~  204 (485)
                      .|..++....+++.+.++++++.|+.+++|+...    ..+.+.|+||.|.|.++.|+|+-+  .|++|..|+.|++||+
T Consensus       103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~----~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl  178 (775)
T KOG0319|consen  103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN----GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL  178 (775)
T ss_pred             ccCCCeEEEEEcCCCceEEeccccceEEEEEeeC----CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence            3888999999999999999999999999998755    578899999999999999999655  5899999999999999


Q ss_pred             CCCce-EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-------------------------------
Q 011457          205 AKGTL-KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI-------------------------------  252 (485)
Q Consensus       205 ~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~-------------------------------  252 (485)
                      .+... ...+..|.+.|++++|++++..+++++.|..|.+||+.+.+..                               
T Consensus       179 ~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~  258 (775)
T KOG0319|consen  179 NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG  258 (775)
T ss_pred             ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence            86654 7788899999999999999988899999988888886421100                               


Q ss_pred             --------------------------------------------------------------------------------
Q 011457          253 --------------------------------------------------------------------------------  252 (485)
Q Consensus       253 --------------------------------------------------------------------------------  252 (485)
                                                                                                      
T Consensus       259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~  338 (775)
T KOG0319|consen  259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH  338 (775)
T ss_pred             CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence                                                                                            


Q ss_pred             --------------------EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc--------------------
Q 011457          253 --------------------RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM--------------------  292 (485)
Q Consensus       253 --------------------~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~--------------------  292 (485)
                                          +.+.+|...|.+++...+|.+|++|+.|.++++|.++.+.                    
T Consensus       339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava  418 (775)
T KOG0319|consen  339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA  418 (775)
T ss_pred             EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee
Confidence                                1123477778888866677788888888888888663210                    


Q ss_pred             --------------------------------eEE----EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457          293 --------------------------------QIF----ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM  336 (485)
Q Consensus       293 --------------------------------~~~----~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~  336 (485)
                                                      .+.    ....|...|++++++|++.++++||.|.+.+||++......
T Consensus       419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~  498 (775)
T KOG0319|consen  419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL  498 (775)
T ss_pred             ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence                                            000    11358889999999999999999999999999999999999


Q ss_pred             eEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          337 LTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       337 ~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      .++.+|...|.++.|+|..+.+++++.|. |++|.+.+..++.++ .+|...|..+.|-.++ .|++++.||-|++|+++
T Consensus       499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            99999999999999999999999999998 999999999999997 6777777777777777 99999999999999999


Q ss_pred             CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ++++...+.        .|+..|++++-++.+.+++||+.||.|.+|.-.+..
T Consensus       578 t~eC~~tlD--------~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  578 TNECEMTLD--------AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             chhhhhhhh--------hccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence            999998886        489999999999999999999999999999865543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-36  Score=258.11  Aligned_cols=290  Identities=23%  Similarity=0.438  Sum_probs=251.5

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK  242 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~  242 (485)
                      .|-+..+.|..|.++|+++.|+-+|+|.++++.|++|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..|.
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~   84 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ   84 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEE
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC--CceEEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT--KMQIFALAGHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      +||+++|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++  .++++.+......|.++...  +..+++|+
T Consensus        85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            999999999999999999999999999999999999999999999975  46788888888999999886  56899999


Q ss_pred             CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc--cEEEEEeCCCC
Q 011457          321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT--IINSMAVNEEG  397 (485)
Q Consensus       321 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~  397 (485)
                      .||+++.||++.|.....+.  ..+|+++.|+++++..++++-+. +++.|-.+|+.+.....+.+.  .+.|.....+.
T Consensus       163 ~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             cCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence            99999999999998766554  46899999999999999888887 999999999998886544432  23333333344


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .+++|++||.|++||+..+..+..+..       ...-.|.+++++|.-..|+++. ++.+..|...
T Consensus       241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~-------~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~  299 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDETQISKLSV-------VSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE  299 (307)
T ss_pred             eEEeccCCceEEEEEeccceeeeeecc-------CCceeEEeeecccCccceeEec-CCceeceeeh
Confidence            999999999999999998877766543       1222389999999988888886 4557777543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.9e-39  Score=290.94  Aligned_cols=280  Identities=26%  Similarity=0.454  Sum_probs=252.7

Q ss_pred             CcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 011457          129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT  208 (485)
Q Consensus       129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~  208 (485)
                      .-.|..+.+.|+|+.+.+++...-..+|+..    .+..-..++.|..+|+++.|++++.++++|+.+|.|++|+..-..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~----~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT----SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCc----eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence            3456667789999999999999999999873    344445677999999999999999999999999999999976444


Q ss_pred             eEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457          209 LKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       209 ~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd  287 (485)
                       ++.+.. |...|++++|+|+...|++|+.||+|+|||....+.-+.+.+|.-.|.+++|||...+|++|+.|..|++||
T Consensus       172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence             444444 559999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC-CEEEEEcCCC-
Q 011457          288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE-DCFASASAEN-  365 (485)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-  365 (485)
                      .+++.++.++.+|...|..+.|++++++|+++|.|..+++||+++.+.+..+++|+..|+++.|+|-. .+|.+++.++ 
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999954 5677777776 


Q ss_pred             EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       366 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      +..|.+...+.+..+...|...|.+++++|-| +|++|+.|.++++|.-
T Consensus       331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            99999987888888888999999999999999 8999999999999974

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-37  Score=279.58  Aligned_cols=294  Identities=18%  Similarity=0.338  Sum_probs=248.3

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC---ceEEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG---TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      .|.+..++|..|++.|.-+.||++|+|||+++.|.+..||++...   ++.+++.+|..+|..+.|+||.+||++|+.|.
T Consensus       212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e  291 (519)
T KOG0293|consen  212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE  291 (519)
T ss_pred             CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence            466778889999999999999999999999999999999987544   45888999999999999999999999999999


Q ss_pred             cEEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC-CccEEEEEEcCCCCEEE
Q 011457          240 QVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~  317 (485)
                      .+.+||..+|.+...+. ++...+.+++|.|||..+++|+.|+.+..||++.. .....++. ...|.++++.+||++++
T Consensus       292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl  370 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVL  370 (519)
T ss_pred             heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEE
Confidence            99999999999988874 45688999999999999999999999999999744 34444433 35699999999999999


Q ss_pred             EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc--cEEEEEeC
Q 011457          318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT--IINSMAVN  394 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~  394 (485)
                      +.+.|..|++|+..+......+ ....+|++++++.+++++++.-.+. +.+||+.....+.++.++..+  .|.++.--
T Consensus       371 ~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  371 LVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             EEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            9999999999998866554333 3467899999999999888776665 999999988888776554432  23333322


Q ss_pred             CC-CeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CEEEEEECCCcEEEecCCCC
Q 011457          395 EE-GVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       395 ~~-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      .+ .++++|++|++|+||+..+|+.+..+.        +|...|++++|+|.. .++|+|+.||+|+||.....
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~sgkll~~Ls--------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRISGKLLAVLS--------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCcceEEecCCCceEEEEEccCCceeEeec--------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            33 399999999999999999999988775        688999999999964 57899999999999988654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.8e-37  Score=296.54  Aligned_cols=333  Identities=24%  Similarity=0.387  Sum_probs=281.9

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEec-CCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~  206 (485)
                      ....+.+...++++..+.++.....++.|..+.    .++++..+. |+++|.-++|+|.+..|++|+.|+.|+|||+..
T Consensus        61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t----gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~  136 (775)
T KOG0319|consen   61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPT----GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN  136 (775)
T ss_pred             chhhhheeeecCCccEEEEeeccceEEEEEccc----chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeC
Confidence            455667778889999999999999999998866    388888887 999999999999999999999999999999999


Q ss_pred             CceEEEEcccccCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCe-eEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHT--YMFSAGDDKQVKCWDLEQNK-VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC  283 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i  283 (485)
                      +.+...|+||.+.|.++.|+|+-.  .|++|..|++|++||+.+.. ++..+..|.+.|++++|.+|+..++++++|..+
T Consensus       137 ~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi  216 (775)
T KOG0319|consen  137 GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVI  216 (775)
T ss_pred             CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEE
Confidence            999999999999999999999765  48999999999999998554 477788999999999999999999999999999


Q ss_pred             EEEECCC-------------------------------------------------------------------------
Q 011457          284 RVWDIRT-------------------------------------------------------------------------  290 (485)
Q Consensus       284 ~iwd~~~-------------------------------------------------------------------------  290 (485)
                      .+||+.+                                                                         
T Consensus       217 ~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~  296 (775)
T KOG0319|consen  217 IVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL  296 (775)
T ss_pred             EEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence            9999743                                                                         


Q ss_pred             ------------------------------------C----------------------ceEEEeccCCccEEEEEEcCC
Q 011457          291 ------------------------------------K----------------------MQIFALAGHDNTVCSVFTRPT  312 (485)
Q Consensus       291 ------------------------------------~----------------------~~~~~~~~~~~~v~~l~~~~~  312 (485)
                                                          |                      .....+.+|+..|.++....+
T Consensus       297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~  376 (775)
T KOG0319|consen  297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS  376 (775)
T ss_pred             EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc
Confidence                                                0                      000123456677777775556


Q ss_pred             CCEEEEEeCCCCEEEEECCCC-----------------------------------------------eE-----Ee---
Q 011457          313 DPQVVTGSHDSTIKFWDLRYG-----------------------------------------------KT-----ML---  337 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~-----------------------------------------------~~-----~~---  337 (485)
                      |-+|++|+.|.++++|.++.+                                               +.     ..   
T Consensus       377 g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~  456 (775)
T KOG0319|consen  377 GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR  456 (775)
T ss_pred             CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence            667777777777777755322                                               00     00   


Q ss_pred             -EeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          338 -TLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       338 -~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                       +...|...|++++++|+..++++|+.|. .++|+++.+..... +.+|...+.++.|++.. .+++++.|++|+||.+.
T Consensus       457 ~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  457 YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE-eeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence             1134777899999999999999999998 99999997776666 58899999999999988 99999999999999999


Q ss_pred             CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                      +..+++++.        +|...|..+.|-.+|..|+++++||.|++|++.++....+..
T Consensus       536 ~fSClkT~e--------GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD  586 (775)
T KOG0319|consen  536 TFSCLKTFE--------GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD  586 (775)
T ss_pred             cceeeeeec--------CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence            999998876        589999999999999999999999999999999988766543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.3e-36  Score=279.05  Aligned_cols=278  Identities=21%  Similarity=0.392  Sum_probs=259.1

Q ss_pred             CcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 011457          129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT  208 (485)
Q Consensus       129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~  208 (485)
                      ...|.+++++.+|.+++++.-+..+++|+++.     .+..+|..|.++|.++.|+.+|+||++++.|+++.+||..+++
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc-----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence            35678899999999999999999999998765     7888999999999999999999999999999999999999999


Q ss_pred             eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEEC
Q 011457          209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI  288 (485)
Q Consensus       209 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~  288 (485)
                      ....+..|..+-..+.|-.+. -+++++.|+.|+++.+....++.++.+|.+.|.+|.|+|.+.+|++++.|++++||++
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             EEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence            999999998887888997554 5899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEeccCCccEEEEEEcCCCC---------EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          289 RTKMQIFALAGHDNTVCSVFTRPTDP---------QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~l~~~~~~~---------~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      ........+..|...|..+.|+|.++         .+++++.|++|++||+..+.++..|..|..+|.+++|+|++.+++
T Consensus       389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence            99999999999999999999999764         689999999999999999999999999999999999999999999


Q ss_pred             EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      +|+.++ +.+|++++++..+..  .....|..++|+.+| +|.++..||.+++.|++
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~--~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSY--QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ecCCCCeeEeccccchheeEee--cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999998 999999999998875  345569999999999 89999999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.3e-37  Score=276.45  Aligned_cols=286  Identities=22%  Similarity=0.397  Sum_probs=248.3

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      ....|.|+.+.  ...+++|..|++|+|||.++..+...+.||.+.|.|+.|.  .+.|++|+.|.+|++||+++++++.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            56789999985  6679999999999999999999999999999999999995  4589999999999999999999999


Q ss_pred             EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457          254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL  330 (485)
Q Consensus       254 ~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~  330 (485)
                      ++-+|...|..+.|+.  .++++++.|.++.+||+.....   .+.+.||...|..+.|+  ++++++++.|.+|++|++
T Consensus       272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence            9999999999999985  5999999999999999987643   34567999999999985  569999999999999999


Q ss_pred             CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457          331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW  409 (485)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~  409 (485)
                      .+++.+.++.+|...|.|+.+  .++++++|+.|+ |++||+..|.++.. +.+|...|.|+.|+.. .+++|+.||+|+
T Consensus       348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv-LeGHEeLvRciRFd~k-rIVSGaYDGkik  423 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-LEGHEELVRCIRFDNK-RIVSGAYDGKIK  423 (499)
T ss_pred             cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH-HhchHHhhhheeecCc-eeeeccccceEE
Confidence            999999999999999998887  588999999888 99999999998876 5789999999999866 899999999999


Q ss_pred             EEeCCCCccccccee-eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          410 FWDWKSGHNFQQAQT-IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       410 iwd~~~~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                      +||+..+........ ........|.+.|..+.|+  ...+++++.|.+|.|||+.++...+..+
T Consensus       424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~~~~~  486 (499)
T KOG0281|consen  424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPSAAEE  486 (499)
T ss_pred             EEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcccccc
Confidence            999988755422211 1122234578899999997  5689999999999999998876554443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.5e-36  Score=268.46  Aligned_cols=294  Identities=19%  Similarity=0.307  Sum_probs=258.3

Q ss_pred             eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      .+..|..|++.|.+++.+|+.++++||+.|..-.||++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||..
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457          247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK  326 (485)
Q Consensus       247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~  326 (485)
                      .++.....+...-+.+.-+.|||.+.+|+.|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            99998888876677889999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             EEECCCCeEEeEeccC-CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc-------CCcccEEEEEeCCCC
Q 011457          327 FWDLRYGKTMLTLTHH-KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS-------QQKTIINSMAVNEEG  397 (485)
Q Consensus       327 iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~  397 (485)
                      +||+.++.++..+... .....++.++..+..++.|+.++ +++.+..+|+.+.....       .+...+.++.+.|..
T Consensus       216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s  295 (399)
T KOG0296|consen  216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS  295 (399)
T ss_pred             EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence            9999999999888643 34577888888999999998887 78888888877665432       344445555555543


Q ss_pred             ----eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          398 ----VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       398 ----~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                          +.++|+-||+|.|||+.........         .|+.+|+.+.|.+ ..+|++++.||.|+.||..++...-
T Consensus       296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~  362 (399)
T KOG0296|consen  296 SKLPLAACGSVDGTIAIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF  362 (399)
T ss_pred             cccchhhcccccceEEEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEE
Confidence                7899999999999999875443332         4788899999998 6799999999999999999987543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-37  Score=275.48  Aligned_cols=283  Identities=22%  Similarity=0.379  Sum_probs=265.9

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .+|...|....++|...+.++++.|.++..|....    ..+.+.|+||++.|..|+|+..|++|++++.|=.+++||..
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t----g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET----GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCceEEEEEccc----hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence            45888899999999999999999999999997744    56689999999999999999999999999999999999997


Q ss_pred             C-CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          206 K-GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       206 ~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      + .+++..+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++.++.++.+|...|..++.+.||.++++++.|.+|+
T Consensus       181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~  260 (406)
T KOG0295|consen  181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR  260 (406)
T ss_pred             HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence            7 567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceEEEeccCCccEEEEEEcCC---------------CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEE
Q 011457          285 VWDIRTKMQIFALAGHDNTVCSVFTRPT---------------DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAM  349 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------------~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l  349 (485)
                      +|-+.++++...+..|+-+|.+++|.|.               ++++.+++.|++|++||+.++.++.++.+|...|+.+
T Consensus       261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~  340 (406)
T KOG0295|consen  261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV  340 (406)
T ss_pred             EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeee
Confidence            9999999999999999999999999764               2489999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       350 ~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      +|+|.|+||+++.+|+ +++||+.+++++..+ ..|...++++.|..+. ++++|+-|-.+++|..
T Consensus       341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTL-EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEcCCCeEEEEEecCCcEEEEEeccceeeecc-CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999998 999999999999886 4889999999999988 9999999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-34  Score=310.88  Aligned_cols=289  Identities=19%  Similarity=0.333  Sum_probs=240.2

Q ss_pred             EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC----c----eEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcE
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----T----LKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQV  241 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----~----~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V  241 (485)
                      +..|.+.|.+++|+|++++||+|+.|+.|+||++...    .    ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4469999999999999999999999999999997542    1    122333 346899999987 47899999999999


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEc-CCCCEEEEE
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR-PTDPQVVTG  319 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~  319 (485)
                      ++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||++++..+..+..+ ..+.++.|. +++.+|++|
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence            9999999999999999999999999997 7889999999999999999999988888754 678999995 578999999


Q ss_pred             eCCCCEEEEECCCCe-EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC------ceeeeeccCCcccEEEE
Q 011457          320 SHDSTIKFWDLRYGK-TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG------EFLHNMLSQQKTIINSM  391 (485)
Q Consensus       320 s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~------~~~~~~~~~~~~~i~~~  391 (485)
                      +.||.|++||++..+ .+..+.+|...|.++.|. ++.+|++++.|+ |++||+..+      ..+.. +.+|...+.++
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~-~~gh~~~i~~v  714 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS-FMGHTNVKNFV  714 (793)
T ss_pred             eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE-EcCCCCCeeEE
Confidence            999999999998865 567788899999999997 677888888777 999999753      34444 45677889999


Q ss_pred             EeCCCC-eEEEEeCCCcEEEEeCCCCccccccee-----eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          392 AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQT-----IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       392 ~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .+++++ +|++|+.||.|++|+............     ........+...|.+++|++++.+|++|+.||.|+||++
T Consensus       715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999988 999999999999999876543322111     000011234567999999999999999999999999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-35  Score=261.19  Aligned_cols=283  Identities=19%  Similarity=0.366  Sum_probs=254.5

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|.+.|....|+|++..++|++.|+.+.+|+.-.   ..+.+.++++|.++|..+.|.+|++.+++++.|.+|+.||.
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g---dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG---DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc---cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            457999999999999999999999999999998533   45667788899999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC  283 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i  283 (485)
                      ++|+....+++|...|+.+.-+..|. ++.+++.|+++++||+++...++++. ....++++.|..++..+++|+-|+.|
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI  198 (338)
T ss_pred             ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence            99999999999999999999665564 56678899999999999999999886 56789999999999999999999999


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC----eEEeEeccCC----CceEEEEECCCC
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG----KTMLTLTHHK----KSVRAMALHPTE  355 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~----~~v~~l~~~p~~  355 (485)
                      ++||++.....+.+.||.++|+.+..+++|.++++-+.|.++++||++..    +++..+.++.    .....++|+|++
T Consensus       199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~  278 (338)
T KOG0265|consen  199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG  278 (338)
T ss_pred             eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence            99999999999999999999999999999999999999999999999853    4466665543    345678999999


Q ss_pred             CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          356 DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      ..+.+++.+. +++||......+.. +.+|.+.|+++.|+|.. +|.+++.|.+|++=+
T Consensus       279 ~~i~ags~dr~vyvwd~~~r~~lyk-lpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  279 TKITAGSADRFVYVWDTTSRRILYK-LPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CccccccccceEEEeecccccEEEE-cCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            9999999988 99999988888777 48899999999999999 999999999998743

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.2e-35  Score=294.16  Aligned_cols=284  Identities=26%  Similarity=0.485  Sum_probs=254.9

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC-CC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV-AK  206 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~-~~  206 (485)
                      +...+....+++++..++++..++.+..|.......  .+.+.+.+|...|++++|+|++.++++++.|++|+|||+ ..
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence            367788889999999999999999999998733221  477778999999999999999999999999999999999 56


Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW  286 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw  286 (485)
                      +..+.++.+|...|++++|+|+++++++|+.|++|+|||++++++++.+.+|...|++++|++++++|++++.|+.|++|
T Consensus       236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw  315 (456)
T KOG0266|consen  236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW  315 (456)
T ss_pred             CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCc--eEEEeccCCcc--EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc---eEEEEECCCCCEEE
Q 011457          287 DIRTKM--QIFALAGHDNT--VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS---VRAMALHPTEDCFA  359 (485)
Q Consensus       287 d~~~~~--~~~~~~~~~~~--v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---v~~l~~~p~~~~l~  359 (485)
                      |+.++.  +...+.++...  ++++.|+|++.++++++.|+.+++||+..++.+..+..|...   +.+...++.+.+++
T Consensus       316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence            999998  56777776665  999999999999999999999999999999999999888774   44455678999999


Q ss_pred             EEcCCC-EEEEECCCCceeeeeccCC-cccEEEEEeCCCC-eEEEEe--CCCcEEEEeCC
Q 011457          360 SASAEN-IKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEG-VLATGG--DNGSLWFWDWK  414 (485)
Q Consensus       360 ~~~~~~-i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~sg~--~dg~I~iwd~~  414 (485)
                      +++.++ |++|++.++..+..+ .+| ...+..+.+++.. ++++++  .|+.+++|...
T Consensus       396 sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  396 SGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999998 999999998877775 455 7888999999988 777777  68999999753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.6e-36  Score=256.68  Aligned_cols=290  Identities=19%  Similarity=0.328  Sum_probs=264.2

Q ss_pred             EEEecCCcceEEEEEcc---CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          169 RVISGHLGWVRSVAFDH---SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      .+..||+.+|..++|+|   +|-+|++++.|+.-.+-+-++|.-+.+|.+|.+.|.+..++.+...-++++.|-+-++||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            35579999999999986   888999999999999999999999999999999999999999988899999999999999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                      .-+|..+.+|. |..-|..++|+.|.++|++|+.+..++|||++.. .+...+.+|.+.|..+.|...++.+++.+.|++
T Consensus        88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t  166 (334)
T KOG0278|consen   88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT  166 (334)
T ss_pred             hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence            99999999997 9999999999999999999999999999999865 456778899999999999999999999999999


Q ss_pred             EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457          325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG  403 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~  403 (485)
                      ||+||.++++.+.++.. ..+|.++.++++|.++..+....|.+||..+...+..+.  ....|.+..++|+. .+++|+
T Consensus       167 VRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGg  243 (334)
T KOG0278|consen  167 VRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGG  243 (334)
T ss_pred             eEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeecc--CccccccccccCCCceEEecC
Confidence            99999999999998864 568999999999999999999999999999988887653  34568888899988 999999


Q ss_pred             CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      +|+.++.||+.+|+.+....       .+|.++|.|+.|+|+|...++|+.||+|++|........
T Consensus       244 ed~~~~kfDy~TgeEi~~~n-------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  244 EDFKVYKFDYNTGEEIGSYN-------KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             cceEEEEEeccCCceeeecc-------cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99999999999998877642       368899999999999999999999999999998876654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.6e-35  Score=278.17  Aligned_cols=284  Identities=17%  Similarity=0.341  Sum_probs=258.5

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      .+.+..|+..|.+|.|+|...+++++-.+|.|.|||.++...+..+.-..-+|++..|-+..+.+++|+.|..|+||+..
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            45566799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-CceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCE
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTI  325 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I  325 (485)
                      +++.+..|+.|.+.|.|++.||...++++++.|-+|++||.+. ..+.+++.+|+..|.+++|.|. .+.+++++-|++|
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            9999999999999999999999999999999999999999975 4788899999999999999994 5789999999999


Q ss_pred             EEEECCCCeEEeEeccCCCceEEEEECCCC--CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE
Q 011457          326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTE--DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT  401 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s  401 (485)
                      ++|.+.+..+..++.+|...|+++.+-+.|  .++++|++|. +++||..+..+++++ .+|...|+.+.|+|.- .+++
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-eGHt~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-EGHTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-hcccccceEEEecCCCcEEEE
Confidence            999999999999999999999999998755  5999999998 999999999998885 7889999999999998 9999


Q ss_pred             EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457          402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM  460 (485)
Q Consensus       402 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i  460 (485)
                      |+.||+++||+-.+-+....+..        .-..|+|++-.+.+..++.|...|.|.|
T Consensus       245 gsEDGTvriWhs~Ty~lE~tLn~--------gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  245 GSEDGTVRIWNSKTYKLEKTLNY--------GLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ecCCccEEEecCcceehhhhhhc--------CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999999999887665555432        3456899998888888888877776543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.5e-33  Score=264.67  Aligned_cols=281  Identities=30%  Similarity=0.540  Sum_probs=257.1

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~  206 (485)
                      +|...|.++.+++++..+++++.++.+.+|....    .+....+.+|...+.++.|+|++++|++++.||.|++||+.+
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET----GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeC----CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            6888899999999999999999999999997654    336677889999999999999999999999999999999999


Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW  286 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw  286 (485)
                      ++....+..|...|.++.|++++.++++++.||.|.+||+.+++.+..+..|...|.++.|+|++.++++++.|+.|++|
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~  162 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW  162 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence            88888899999999999999998888888889999999999999999998899999999999998888888889999999


Q ss_pred             ECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc-CCC
Q 011457          287 DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS-AEN  365 (485)
Q Consensus       287 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-~~~  365 (485)
                      |+++++.+..+..|...+.++.|+++++.+++++.||.|++||++.++.+..+..+...+.++.|+|++.++++++ ++.
T Consensus       163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  242 (289)
T cd00200         163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT  242 (289)
T ss_pred             EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence            9999998888888999999999999999999999999999999999999888878888999999999999999988 455


Q ss_pred             EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       366 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      +.+|++.+++....+. .+...+.++.|++++ +|++++.||.|++|+
T Consensus       243 i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         243 IRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999888777754 677789999999997 999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-34  Score=284.86  Aligned_cols=286  Identities=20%  Similarity=0.382  Sum_probs=254.5

Q ss_pred             EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK  250 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~  250 (485)
                      +..-+..|..++|+|...+++++-..|.|++||..-+.++..|..|.++|+.++|+|++.++++||.|..|++|+..+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457          251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL  330 (485)
Q Consensus       251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~  330 (485)
                      ++.++.+|.+.|..+.||+.-..|++++.|.+|+||+..+++++..+.||...|.|..|+|....++++|-|.+||+||+
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi  164 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI  164 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCe-----------------------------EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce-eee
Q 011457          331 RYGK-----------------------------TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF-LHN  379 (485)
Q Consensus       331 ~~~~-----------------------------~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~-~~~  379 (485)
                      ...+                             ....+.+|...|+-++|+|.-.+|++|++|. +++|....-+. ...
T Consensus       165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD  244 (1202)
T KOG0292|consen  165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD  244 (1202)
T ss_pred             cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence            5210                             1234678999999999999999999999998 99998865443 223


Q ss_pred             eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcE
Q 011457          380 MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTI  458 (485)
Q Consensus       380 ~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I  458 (485)
                      ...+|...|+++.|+|.. .+++.++|++|++||+.....++.+..        .+...+.++-+|..+++++| .|+-+
T Consensus       245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--------endRFW~laahP~lNLfAAg-HDsGm  315 (1202)
T KOG0292|consen  245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--------ENDRFWILAAHPELNLFAAG-HDSGM  315 (1202)
T ss_pred             hhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec--------cCCeEEEEEecCCcceeeee-cCCce
Confidence            356888999999999987 999999999999999998887777653        45668889999998877765 56667


Q ss_pred             EEecCCC
Q 011457          459 KMWREDE  465 (485)
Q Consensus       459 ~iW~~~~  465 (485)
                      .||+++.
T Consensus       316 ~VFkleR  322 (1202)
T KOG0292|consen  316 IVFKLER  322 (1202)
T ss_pred             EEEEEcc
Confidence            7887764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.5e-36  Score=264.27  Aligned_cols=291  Identities=20%  Similarity=0.384  Sum_probs=253.7

Q ss_pred             CCcceEEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE--------EcccccCEEEEEEcCCCCEEE
Q 011457          163 APWKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT--------LTGHIEQVRGLAVSSKHTYMF  233 (485)
Q Consensus       163 ~~~~~~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~--------~~~h~~~V~~l~~s~~~~~l~  233 (485)
                      .|..+.+.++ |...-+-|..|+|||+||++|+.||-|.+||..+|++...        |.-+...|.|+.|+.|...|+
T Consensus       200 ~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlA  279 (508)
T KOG0275|consen  200 YPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLA  279 (508)
T ss_pred             chHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhh
Confidence            3445566665 6677899999999999999999999999999999986554        344778999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC
Q 011457          234 SAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT  312 (485)
Q Consensus       234 s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  312 (485)
                      +|+.||.|++|.+++|.|++.|. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+.+|.+.|+...|.++
T Consensus       280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence            99999999999999999999996 89999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCCEEEEECCCCeEEeEeccC--CCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCc--c
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQK--T  386 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~--~  386 (485)
                      |..+++++.||+|++|+.++.+++.+++..  ..+|.++...|.+ ..+++|...+ +++.++ .|+.++.+..+..  +
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgG  438 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGG  438 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCC
Confidence            999999999999999999999999988754  3478888887765 4666676665 888776 5677777755442  4


Q ss_pred             cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       387 ~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      ...+...+|.| ++.+.+.|+.++.|.+.+|..-..+..        |+..|..++-+|..+.|++-+.||.+++|+
T Consensus       439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V--------hEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV--------HEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--------ccccccccccCcccchhhhhcccchhhhcC
Confidence            45566788888 999999999999999999987666543        677788999999999999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=260.16  Aligned_cols=285  Identities=20%  Similarity=0.374  Sum_probs=260.5

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      .++|.+-|.+++..|....++|++.|+++.+|+.    ...++..+|.||-..|..+++|+...||++++.|+.|+.||+
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDl----atg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDL----ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEc----ccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            4689999999999999999999999999999977    457888999999999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      +..+.+..+.||-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|....+++|+.|++|+
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr  302 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR  302 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             EEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457          285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      +||++.++....+..|...|.+++.+|....|++++.| .|+-|++..+..+..+.+|...|.+++...|+.++..+..+
T Consensus       303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng  381 (460)
T KOG0285|consen  303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG  381 (460)
T ss_pred             EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence            99999999999999999999999999999999998877 59999999999999999999999999999887666555445


Q ss_pred             CEEEEECCCCceeeeecc-------CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          365 NIKKFNLPKGEFLHNMLS-------QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       365 ~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      .+.+||.++|...+....       .....|.+.+|...+ .|++|..|.+|++|.-.
T Consensus       382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            599999999876655411       123568889999999 99999999999999744

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-34  Score=247.50  Aligned_cols=294  Identities=16%  Similarity=0.258  Sum_probs=247.1

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~  249 (485)
                      .|+||..+++.|.|+.+|++|++++.|.++.||-..+|+.+.++.+|.+.|.|+..+.+..++++|+.|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46799999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             eeEEEecccCCceEEEEEecCCCEEEEEEC-----CCcEEEEECC-------CCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457          250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGR-----DSVCRVWDIR-------TKMQIFALAGHDNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~l~  317 (485)
                      +++..++ ...+|..+.|+++|++++....     .+.|.++|++       ..+++..+..+.+.++.+.|.|-+.+|+
T Consensus        85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            9999998 6789999999999998887755     4679999998       4566888888999999999999999999


Q ss_pred             EEeCCCCEEEEECCCCeE-EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC
Q 011457          318 TGSHDSTIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE  395 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  395 (485)
                      +|..||.|.+||+++++. +.....|...|+.+.++++..+|++++.|. -++||..+-+.+.++.  ...++++.+++|
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~aaisP  241 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNTAAISP  241 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee--ecccccceeccc
Confidence            999999999999999854 556678899999999999999999999998 9999999999888864  456799999999


Q ss_pred             CC-eEEEE-eCCC-cEEEEeCCCCccccccee----eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          396 EG-VLATG-GDNG-SLWFWDWKSGHNFQQAQT----IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       396 ~~-~l~sg-~~dg-~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      .. .++.| +.+- .|.-=+.+.|+--..+-.    .......+|-++|++++|+|+|+..++|+.||.|++..++..
T Consensus       242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            76 44444 4331 122222222221111100    001122468899999999999999999999999999987654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=264.30  Aligned_cols=287  Identities=17%  Similarity=0.270  Sum_probs=251.9

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ...|.+.|+-+.||++|.++|++++|.+.-.|....... +++++++.+|..+|..|.||||.++|++|+.|..+.+||+
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence            346999999999999999999999999999998766544 9999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccC-CceEEEEEecCCCEEEEEECCCc
Q 011457          205 AKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       205 ~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      .+|.+...+. ++...+.+++|.|||..+++|+.|+.+..||++ |..+..+++-. ..|.+++..+||+++++.+.|..
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~  377 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK  377 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence            9999887765 346889999999999999999999999999987 45556665443 56999999999999999999999


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc--eEEEEEC-CCCCEEE
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS--VRAMALH-PTEDCFA  359 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~--v~~l~~~-p~~~~l~  359 (485)
                      |++++.++......+. ...+|++++++.+++++++.-.+..|++||+...+.+..+.+|+..  +..-+|- .+..+++
T Consensus       378 i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia  456 (519)
T KOG0293|consen  378 IRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA  456 (519)
T ss_pred             eeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence            9999998776654443 5678999999999999999999999999999998889899888764  2223443 3557999


Q ss_pred             EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCC
Q 011457          360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~  415 (485)
                      +|+.|. |++|+..+|+.+..+ .+|...++|++|+|..  ++|++++||+|+||....
T Consensus       457 SGSED~kvyIWhr~sgkll~~L-sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  457 SGSEDSKVYIWHRISGKLLAVL-SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ecCCCceEEEEEccCCceeEee-cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999988 999999999998885 7888999999999998  999999999999997653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-34  Score=280.79  Aligned_cols=315  Identities=25%  Similarity=0.425  Sum_probs=272.8

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      +..++..+-.++|+|..+.+.++.-...++.|+-    .-..++..|.+|.|+|+.|+|+|++.+|++|+.|..|+||+.
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDY----RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDY----RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehh----hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence            3456777888999999999999999999999965    336778889999999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      ++.+++.++.||-+.|+.+.|++.-.+|++++.|.+|+||+..+++++..+.||...|.|..|||..+.+++++-|.+|+
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCC-----------------------------ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          285 VWDIRTK-----------------------------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       285 iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                      |||+..-                             -..+.+.||...|.-++|+|.-+.+++|+.|..|++|.+...+.
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence            9998520                             01245679999999999999999999999999999999876553


Q ss_pred             --EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457          336 --MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD  412 (485)
Q Consensus       336 --~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd  412 (485)
                        +.+..+|...|.++-|+|...++++.+.|+ |++||+.+.+.++.+ ...+....+++.+|..-|++++.|+-+.+|.
T Consensus       241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf-rrendRFW~laahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF-RRENDRFWILAAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee-eccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence              557889999999999999999999999998 999999999999887 4556788999999999666666777777887


Q ss_pred             CCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          413 WKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ++..                  .++.  +.+  ++.|+-.- |..|+.+|+.+..
T Consensus       320 leRE------------------rpa~--~v~--~n~LfYvk-d~~i~~~d~~t~~  351 (1202)
T KOG0292|consen  320 LERE------------------RPAY--AVN--GNGLFYVK-DRFIRSYDLRTQK  351 (1202)
T ss_pred             Eccc------------------CceE--EEc--CCEEEEEc-cceEEeeeccccc
Confidence            6532                  1122  233  33444443 8889999888744

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-33  Score=269.22  Aligned_cols=279  Identities=22%  Similarity=0.370  Sum_probs=253.6

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~  206 (485)
                      .++..|-+..++|..+.+.++.-...+.+|+-..    ...++.+.-..-+|++..|-...+++++|+.|..|+||+..+
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet----qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET----QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEeccc----ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            3778888999999999999999999999997643    567888888899999999999999999999999999999999


Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEec-CCCEEEEEECCCcEE
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCR  284 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~  284 (485)
                      ++.+..|..|...|++++.+|..+++++++.|-+|++||.+.+ .+.++|.+|...|.+++|+| |.+.+++++-|++|+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence            9999999999999999999999999999999999999999865 68899999999999999999 567999999999999


Q ss_pred             EEECCCCceEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457          285 VWDIRTKMQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      ||.+.+..+..++.+|...|.|+.+-+.  .++|++|+.|.+|+|||..+..++.++.+|...|..+.|+|.-.++++|+
T Consensus       167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs  246 (794)
T KOG0276|consen  167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS  246 (794)
T ss_pred             EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence            9999999999999999999999999874  47999999999999999999999999999999999999999999999999


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEE
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWF  410 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~i  410 (485)
                      .|+ +++|+..+-+....+ .-....+.|++..+.+ .+++|.++|.|.+
T Consensus       247 EDGTvriWhs~Ty~lE~tL-n~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  247 EDGTVRIWNSKTYKLEKTL-NYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CCccEEEecCcceehhhhh-hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            998 999998877655553 4455678888877766 7888887776644

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3e-33  Score=253.13  Aligned_cols=279  Identities=25%  Similarity=0.459  Sum_probs=241.8

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH---TYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~V~iwd~~~~  249 (485)
                      -|.++|.+|...  ++++++|++||.++|||. .|+....+.+|.++|.+++|.-..   ..|++++.|.++++|-++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            499999999987  889999999999999995 689999999999999988886443   35999999999999998877


Q ss_pred             ee----EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC-------------------------CCceEEEeccC
Q 011457          250 KV----IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-------------------------TKMQIFALAGH  300 (485)
Q Consensus       250 ~~----~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-------------------------~~~~~~~~~~~  300 (485)
                      +.    ++...||...|-++...++|..+++|+.|.+|.||+..                         ++.++..+.+|
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            53    33345999999999999999999999999999999932                         13456778899


Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC--cee
Q 011457          301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG--EFL  377 (485)
Q Consensus       301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~--~~~  377 (485)
                      ..+|.++.|++ ...+++++.|.+|+.||+.++....++.. ...+.++.++|...+|++++.+. +++||-+++  ..+
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence            99999999997 56899999999999999999999888875 56799999999999999999887 999998764  566


Q ss_pred             eeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCc-ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          378 HNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGH-NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       378 ~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      ...+.+|...|.++.|+|..  .|++|+.||++++||+++.. .+..+.        .|...|.++.|.. +.++++||.
T Consensus       338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~--------~h~DKvl~vdW~~-~~~IvSGGa  408 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--------GHNDKVLSVDWNE-GGLIVSGGA  408 (423)
T ss_pred             EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec--------cCCceEEEEeccC-CceEEeccC
Confidence            66678899999999999988  89999999999999999876 444433        5789999999974 569999999


Q ss_pred             CCcEEEecCCC
Q 011457          455 DKTIKMWREDE  465 (485)
Q Consensus       455 Dg~I~iW~~~~  465 (485)
                      |.+|+|++-..
T Consensus       409 D~~l~i~~~~~  419 (423)
T KOG0313|consen  409 DNKLRIFKGSP  419 (423)
T ss_pred             cceEEEecccc
Confidence            99999997543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.4e-32  Score=292.49  Aligned_cols=284  Identities=17%  Similarity=0.279  Sum_probs=242.0

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCC----CCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEE
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH----APWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKI  201 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~----~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~i  201 (485)
                      .|.+.|.+++|++++.++++++.|+.+.+|......    ....+...+. +...|.+++|++ ++.+|++++.||+|+|
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l  559 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV  559 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence            478889999999999999999999999999754311    1111233343 456899999987 5789999999999999


Q ss_pred             EECCCCceEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEEC
Q 011457          202 WDVAKGTLKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGR  279 (485)
Q Consensus       202 wd~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~  279 (485)
                      ||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|++ ++.+|++|+.
T Consensus       560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~  638 (793)
T PLN00181        560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA  638 (793)
T ss_pred             EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence            99999999999999999999999997 7889999999999999999999998888744 6799999964 6899999999


Q ss_pred             CCcEEEEECCCCc-eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC------CeEEeEeccCCCceEEEEEC
Q 011457          280 DSVCRVWDIRTKM-QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY------GKTMLTLTHHKKSVRAMALH  352 (485)
Q Consensus       280 dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~------~~~~~~~~~~~~~v~~l~~~  352 (485)
                      ||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|++|++||++.      .+++..+.+|...+..++|+
T Consensus       639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s  717 (793)
T PLN00181        639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS  717 (793)
T ss_pred             CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence            9999999998765 467788999999999997 678999999999999999974      35678889999999999999


Q ss_pred             CCCCEEEEEcCCC-EEEEECCCCceeeee------------ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          353 PTEDCFASASAEN-IKKFNLPKGEFLHNM------------LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       353 p~~~~l~~~~~~~-i~i~d~~~~~~~~~~------------~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      |++.+|++++.++ +.+|+......+..+            ...+...|.+++|++++ .|++|+.||.|++|++
T Consensus       718 ~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        718 VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999999999887 999998665433221            12344679999999999 9999999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.4e-34  Score=256.27  Aligned_cols=275  Identities=23%  Similarity=0.456  Sum_probs=237.0

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG  207 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~  207 (485)
                      .+..|.++.++.  ..+.++..|+++.+|.+..    ..+.+.|.||+|.|.|+.|.  .+.+++|+.|.+|+|||++++
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~----~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNS----LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEecccc----HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence            445566665543  4577899999999998754    78889999999999999995  669999999999999999999


Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK---VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      +++.++-+|...|..+.|+  ..++++++.|.+|.+||+....   +.+.+.||...|..+.|+.  +++++++.|.+|+
T Consensus       268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTik  343 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIK  343 (499)
T ss_pred             chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEE
Confidence            9999999999999999997  4689999999999999998664   3345679999999999975  5999999999999


Q ss_pred             EEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457          285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      +|++.+.+.+.++.+|...|.|+.+  .++++++|+.|.+|++||+..|.++..+.+|+.-|+++.|.  .+.+++|..|
T Consensus       344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD  419 (499)
T KOG0281|consen  344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD  419 (499)
T ss_pred             EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence            9999999999999999999999987  58899999999999999999999999999999999999995  6778888877


Q ss_pred             C-EEEEECCCCceeee--------eccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457          365 N-IKKFNLPKGEFLHN--------MLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       365 ~-i~i~d~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      + |++||+..+.....        ....|.+.|..+.|..- .+++++.|.+|.|||+.++-.-
T Consensus       420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeEEEEEcCCCCcc
Confidence            7 99999987654321        13456678888888655 7888888999999999876443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-32  Score=264.10  Aligned_cols=285  Identities=21%  Similarity=0.379  Sum_probs=255.7

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~  248 (485)
                      -.+.||+..|++++++.+...+++|+. +.|+||+..+.+++.++..  +.+.+..|.|.++++++|...|.+.+||+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            346699999999999999888888864 6899999999999999974  4899999999999999999999999999999


Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-----Cce--EEEec-----cCCccEEEEEEcCCCCEE
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-----KMQ--IFALA-----GHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~--~~~~~-----~~~~~v~~l~~~~~~~~l  316 (485)
                      ...+.++..|.+.|+.++.+||+..+++|+.|.+|++||..-     +..  +..+.     .-+..|.|+.++||+++|
T Consensus       444 ~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L  523 (888)
T KOG0306|consen  444 ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL  523 (888)
T ss_pred             hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEE
Confidence            999999999999999999999999999999999999999742     111  11111     245789999999999999


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE  395 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  395 (485)
                      +++--|.++++|-+.+.+...++.+|.-||.|+.++||+.++++|+.|. +++|-+.-|.+-..+ ..|+..|.++.|.|
T Consensus       524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSVMSVQFLP  602 (888)
T ss_pred             EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCceeEEEEcc
Confidence            9999999999999999999999999999999999999999999999997 999999999887775 56788899999999


Q ss_pred             CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          396 EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       396 ~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      .. .+++++.||.|+-||-...+.++.+.        +|...|++++.+|+|.++++++.|.+|++|....
T Consensus       603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~--------~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLD--------GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cceeEEEecCcceEEeechhhhhhheeec--------cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            88 89999999999999988777776664        5888999999999999999999999999998766

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=9.4e-34  Score=258.90  Aligned_cols=289  Identities=21%  Similarity=0.427  Sum_probs=252.5

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV  241 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V  241 (485)
                      |-.....+..|.+.|..+.|-++...|++|+.|..|++|+....+  .+.++.+..+.|+++.|.+++.++++++.|+.+
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            445667788999999999999998999999999999999987666  677888889999999999999999999999999


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      ++|++.+.+...++.+|.+.|+++.|......+++|+.|.+|++||+....+..++. ..+.+..|+.+  ...+++|-.
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~  320 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF  320 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc
Confidence            999999999999999999999999999887779999999999999999988877665 34556666665  557889999


Q ss_pred             CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC---CcccEEEEEeCCCC
Q 011457          322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ---QKTIINSMAVNEEG  397 (485)
Q Consensus       322 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~  397 (485)
                      |+.|++||+++..+......+. .|+++..++++..+.+++.+. +.++|+++.+..+.+...   .....+.+.|+|++
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             ccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence            9999999999999999888765 899999999999988888776 999999998877765322   12347889999999


Q ss_pred             -eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          398 -VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       398 -~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                       |+++|+.||.|+||++.++++...+...      ....+|++++|+|.|..|++++.++.+.+|.
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s------~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLS------TSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccC------CCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence             9999999999999999999887766541      2233799999999999999999999999994

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.5e-32  Score=277.21  Aligned_cols=293  Identities=21%  Similarity=0.275  Sum_probs=248.7

Q ss_pred             cCCcceEEEEEccCCCEEEEEe--CCCeEEEEECCC------------CceEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGS--ADRTIKIWDVAK------------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs--~dg~I~iwd~~~------------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  238 (485)
                      .+...|.+|+.+|++..++||+  .|+.++||+.+.            .+.+.++..|.+.|+|+.|++||+|||+|++|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3456799999999999999999  899999998642            23456677899999999999999999999999


Q ss_pred             CcEEEEECCC------------------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC
Q 011457          239 KQVKCWDLEQ------------------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH  300 (485)
Q Consensus       239 g~V~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  300 (485)
                      +.|.||....                  .+++..+.+|.+.|..++|+|++.+|++++.|++|.|||.++.+.+..+.+|
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H  170 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH  170 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence            9999998762                  2367788899999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC------CceEEEEECCCCCEEEEEcCCC-----EEEE
Q 011457          301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK------KSVRAMALHPTEDCFASASAEN-----IKKF  369 (485)
Q Consensus       301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------~~v~~l~~~p~~~~l~~~~~~~-----i~i~  369 (485)
                      .+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+.      .-++.+.|+|||.+|++...-+     +.+.
T Consensus       171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii  250 (942)
T KOG0973|consen  171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII  250 (942)
T ss_pred             cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence            9999999999999999999999999999988766666665443      3578899999999999875422     8888


Q ss_pred             ECCCCceeeeeccCCcccEEEEEeCCC------C------------eEEEEeCCCcEEEEeCCCCcccccceeeeccCCC
Q 011457          370 NLPKGEFLHNMLSQQKTIINSMAVNEE------G------------VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL  431 (485)
Q Consensus       370 d~~~~~~~~~~~~~~~~~i~~~~~~~~------~------------~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  431 (485)
                      +-.+.+.-..+ .+|..++.++.|+|.      .            .+++|+.|++|.||.....+++.....+      
T Consensus       251 eR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l------  323 (942)
T KOG0973|consen  251 ERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL------  323 (942)
T ss_pred             ecCCceeeeee-ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh------
Confidence            87766666665 567779999999862      1            5788999999999998777766655432      


Q ss_pred             CCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          432 DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                       ....|.+++|+|||..|+.++.||+|.+..+++....+..+
T Consensus       324 -f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls  364 (942)
T KOG0973|consen  324 -FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALS  364 (942)
T ss_pred             -hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccC
Confidence             35679999999999999999999999999998876544433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-30  Score=231.87  Aligned_cols=293  Identities=17%  Similarity=0.298  Sum_probs=245.9

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC--CCcEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVK  242 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~V~  242 (485)
                      +++.+++..-.+.|+++.|+++|.+|++++.|.+++|||..+++.+.++..+.-.|..++|......++.++.  |.+|+
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            4445566667899999999999999999999999999999999999999988889999999887777777665  89999


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD  322 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d  322 (485)
                      ..++.+++.++.|.||...|..|+.+|-++.+++++.|++|++||++..++...+...  .-..++|.|.|-++|++...
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCC
Confidence            9999999999999999999999999999999999999999999999988887776533  33456889999999999888


Q ss_pred             CCEEEEECCCC--eEEeEec---cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc--ccEEEEEeC
Q 011457          323 STIKFWDLRYG--KTMLTLT---HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK--TIINSMAVN  394 (485)
Q Consensus       323 g~I~iwd~~~~--~~~~~~~---~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~  394 (485)
                      ..|++||++..  .+-.++.   ........|.|+|+|++++.+...+ +++.|.-+|..+..+.....  ...-...|.
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            89999999974  2333333   3356889999999999998888777 99999999998877644332  223567789


Q ss_pred             CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      |++ ++++|++||+|.+|++++|+.+..+..       .+...+.++.|+|.-.+++++  +..+.+|=.+..+.
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-------~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~~  307 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-------PNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDAL  307 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecC-------CCCCCccccccCCceeeeeec--CceEEEEecccccc
Confidence            999 899999999999999999998877764       256678899999987777766  56888997765544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3e-32  Score=240.49  Aligned_cols=290  Identities=22%  Similarity=0.363  Sum_probs=243.6

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC------------------CceEEEEcccccCEEEEEEcCCC
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK------------------GTLKLTLTGHIEQVRGLAVSSKH  229 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~------------------~~~~~~~~~h~~~V~~l~~s~~~  229 (485)
                      ...+..|.+++++.+|++||.++|||+.|..|+|.|++.                  .-.+.++..|...|+++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            345778999999999999999999999999999999861                  13567788899999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---ccCCccE
Q 011457          230 TYMFSAGDDKQVKCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---AGHDNTV  304 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v  304 (485)
                      ..|++|+.|++|+++|+......+.++  ....+|.++.|||.|.+|++|....++++||+++.++...-   ..|.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            999999999999999997654333332  24578999999999999999999999999999998776543   3689999


Q ss_pred             EEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-C-CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeec
Q 011457          305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-H-KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML  381 (485)
Q Consensus       305 ~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~-~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~  381 (485)
                      +++.+++.+++.++++.||.|++||--+++++.++.. | +..|.+..|..+++++++.+.|. +++|.+.++..+....
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            9999999999999999999999999999999988753 3 45799999999999999999998 9999999999998875


Q ss_pred             cCCc----ccEEEEEeCCCC-eEEE-EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457          382 SQQK----TIINSMAVNEEG-VLAT-GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD  455 (485)
Q Consensus       382 ~~~~----~~i~~~~~~~~~-~l~s-g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D  455 (485)
                      ....    ..-+...|+... +++. --..+.+.-||.+++.....+.       ++|++.+..+.-+|.+.-+++|+.|
T Consensus       345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-------lgHn~a~R~i~HSP~~p~FmTcsdD  417 (430)
T KOG0640|consen  345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-------LGHNGAVRWIVHSPVEPAFMTCSDD  417 (430)
T ss_pred             cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-------cCCCCCceEEEeCCCCCceeeeccc
Confidence            4421    112233455544 4444 3445789999999987766554       5899999999999999999999999


Q ss_pred             CcEEEecCC
Q 011457          456 KTIKMWRED  464 (485)
Q Consensus       456 g~I~iW~~~  464 (485)
                      -.+++|--.
T Consensus       418 ~raRFWyrr  426 (430)
T KOG0640|consen  418 FRARFWYRR  426 (430)
T ss_pred             ceeeeeeec
Confidence            999999754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9e-32  Score=233.07  Aligned_cols=286  Identities=21%  Similarity=0.293  Sum_probs=246.7

Q ss_pred             cCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          124 GASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       124 ~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      ...||...+..+.++.+|.++.++.+|..+.+|-.    .....+-++.||++.|+|++.+.+.+.++||+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s----~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYS----LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEe----cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            34578899999999999999999999999999954    23567889999999999999999999999999999999999


Q ss_pred             CCCCceEEEEcccccCEEEEEEcCCCCEEEEEe-----CCCcEEEEECC-------CCeeEEEecccCCceEEEEEecCC
Q 011457          204 VAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-----DDKQVKCWDLE-------QNKVIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       204 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-----~dg~V~iwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~  271 (485)
                      +++|+.+..+. ...+|..+.|+++|++++.+.     ..+.|.++|++       ..+++..+..+.+.++..-|.|-+
T Consensus        81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~  159 (327)
T KOG0643|consen   81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG  159 (327)
T ss_pred             cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence            99999999998 568999999999999887765     34789999997       456677777888999999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCce-EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEE
Q 011457          272 DILLTGGRDSVCRVWDIRTKMQ-IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA  350 (485)
Q Consensus       272 ~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~  350 (485)
                      ++|++|..||.|.+||+++++. +.....|...|+.+.++++..++++++.|.+-++||.++.+.+.++.. ..+|++.+
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa  238 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA  238 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence            9999999999999999999754 455577999999999999999999999999999999999999888864 67899999


Q ss_pred             ECCCCCEEEEEcCCC---EEEEECCCCceeeee-----------ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          351 LHPTEDCFASASAEN---IKKFNLPKGEFLHNM-----------LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       351 ~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      ++|....++.++...   +.--+.+.|++..++           ..+|-++|++++++|+| ..++|+.||.|++.-+..
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            999888777766544   444444555443332           35788999999999999 899999999999986553

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-31  Score=231.15  Aligned_cols=284  Identities=17%  Similarity=0.293  Sum_probs=250.3

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE--EEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWD  245 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd  245 (485)
                      +.+++|.+.|.+|+|+.+|..|++|+.|+++.+|++...+...  ...+|.+.|-.++|+|.. ..|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            6678999999999999999999999999999999998775544  357899999999999754 6899999999999999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI  325 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I  325 (485)
                      +++++++.......+. .-+.|+|+|++++.++.|..|.+.|.++.+.....+ ....+.-++|+.++.+++.....|+|
T Consensus        94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence            9999999988744444 458899999999999999999999999888776665 45677888888888888888888999


Q ss_pred             EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457          326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG  403 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~  403 (485)
                      .|......+++..++.|.....||.|+|+|++|++|+.|. +.+||+...-+++.+ ...+-+|..+.|+.+| +|++|+
T Consensus       172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-SRLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-ccccCceEEEEeccCcceeeccC
Confidence            9999999999999999999999999999999999999998 999999888777775 6678899999999999 999999


Q ss_pred             CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC---------CcEEEecCC
Q 011457          404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD---------KTIKMWRED  464 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D---------g~I~iW~~~  464 (485)
                      +|..|-|=++++|..+..++         ++++-+.++|+|...+||-++.|         |.|++|-+.
T Consensus       251 EDh~IDIA~vetGd~~~eI~---------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  251 EDHFIDIAEVETGDRVWEIP---------CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             ccceEEeEecccCCeEEEee---------ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            99999999999999887765         57789999999999999988865         567777554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=250.34  Aligned_cols=288  Identities=19%  Similarity=0.339  Sum_probs=249.0

Q ss_pred             CcceEEEEEccCCCE-EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          175 LGWVRSVAFDHSNTW-FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      .+.|.+++|+|...+ +|+.+. -.+.||+..+.....++......|.++.|..||.+|++|...|.|+|||+.+...++
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            468999999996543 444433 579999999888888888888999999999999999999999999999987777888


Q ss_pred             EecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECC
Q 011457          254 SYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLR  331 (485)
Q Consensus       254 ~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~  331 (485)
                      .+..|..+|..+.|+|+++ .|++|+.|+.+++||+.+......+.+|++.|.+.+|+|.. ..+++|+.||.|++||++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            9999999999999999754 78888899999999999998777899999999999999964 488999999999999999


Q ss_pred             CC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457          332 YG-KTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLW  409 (485)
Q Consensus       332 ~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~  409 (485)
                      .. ..+.++ .|..+|.++.+-|.|..|++++...+++||+.+|..+......|...|+|+.+..++ .|++|+-||.++
T Consensus       185 ~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK  263 (487)
T KOG0310|consen  185 SLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK  263 (487)
T ss_pred             cCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence            87 445555 578999999999999999999999999999997776666566688999999999988 999999999999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                      +||+.+-+.+..+.         -.++|.+++.+|+++.++.|..||.+.+=+....+.+...|
T Consensus       264 Vfd~t~~Kvv~s~~---------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~~~  318 (487)
T KOG0310|consen  264 VFDTTNYKVVHSWK---------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSKEP  318 (487)
T ss_pred             EEEccceEEEEeee---------cccceeeEEecCCCceEEEecccceeeeehhhcccCCCccc
Confidence            99987766665543         46789999999999999999999999888766666555444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.7e-33  Score=259.87  Aligned_cols=285  Identities=18%  Similarity=0.318  Sum_probs=250.3

Q ss_pred             ccCCCCCcceeecccCC-CCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457          123 VGASGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI  201 (485)
Q Consensus       123 ~~~~~~~~~i~~~~~~~-~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i  201 (485)
                      ...+||...|.++.+-| .+-|+.++++|..+.+|..-.   ..++++++.||..+|.+++|+++|..|++++.|+.|++
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---CcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            45678999999998888 788999999999999997633   67899999999999999999999999999999999999


Q ss_pred             EECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457          202 WDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      ||+++|++...+. -...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|.+.|..+.|-++|..+++.+.|
T Consensus       285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            9999999999987 45678999999998 788999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe---EEeEeccCCC--ceEEEEECCC
Q 011457          281 SVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK---TMLTLTHHKK--SVRAMALHPT  354 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~~~--~v~~l~~~p~  354 (485)
                      ++++||+.+....+.... .+.-...++..+|++++++.-+.|..|.+|.+...-   ....+.+|..  --..+.||||
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            999999999877665443 233456788889999999999999999999875432   2234555543  3456899999


Q ss_pred             CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEe
Q 011457          355 EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWD  412 (485)
Q Consensus       355 ~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd  412 (485)
                      |.+|++|+.++ +.+||.++-+.+..+ ..|+..+..+.|+|..  .+++++.||.|++||
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~kl~~~l-kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTTKLVSKL-KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCeEEeecCCccEEEeechhhhhhhcc-ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            99999999988 999999999888875 5668899999999977  999999999999996

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.3e-31  Score=265.20  Aligned_cols=285  Identities=29%  Similarity=0.550  Sum_probs=252.8

Q ss_pred             EEEEec-CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE-EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          168 YRVISG-HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       168 ~~~l~~-H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      +..+.+ |...|.+..|.  ..++++++.|++|++||..++..+.. +.+|.+.|.++++...+.+|++|+.|.++++||
T Consensus       200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence            344444 67788899888  66799999999999999999999888 999999999999998889999999999999999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI  325 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I  325 (485)
                      ..++++...+.+|.+.|.++...+  .++++|+.|.+|++|++.++..+..+.+|...|.++.++  +.++++|+.||+|
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence            999999999999999999998765  578889999999999999999999999999999999997  8899999999999


Q ss_pred             EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC-ceeeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457          326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG-EFLHNMLSQQKTIINSMAVNEEGVLATGG  403 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~sg~  403 (485)
                      ++||+.+++++.++.+|...|.++.+.+. ..+++|+.|+ |++||+.+. +++.. +.+|...+..+.+... .|++++
T Consensus       354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-l~~h~~~v~~l~~~~~-~Lvs~~  430 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT-LQGHTSLVSSLLLRDN-FLVSSS  430 (537)
T ss_pred             EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh-hcCCcccccccccccc-eeEecc
Confidence            99999999999999999999999988766 8888888888 999999999 66666 4677777766655444 899999


Q ss_pred             CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      .||.|++||..++++...+...       +...|+.+++.  ...+++++.||++++||+..+....
T Consensus       431 aD~~Ik~WD~~~~~~~~~~~~~-------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECLRTLEGR-------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             ccccEEEeecccCceeeeeccC-------CcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence            9999999999999988877641       45778888886  4689999999999999999887655

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=228.05  Aligned_cols=278  Identities=19%  Similarity=0.285  Sum_probs=245.5

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      ..+.++|....++.+|++..|++.|+++++|++-    ...++++..+|...|..++.+.|+..|++|+.|+.|.+||++
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~----rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL----RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeeccc----ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            4577888999999999999999999999999874    367899999999999999999999999999999999999999


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC  283 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i  283 (485)
                      +|+....+.+|.+.|+.++|+.+...+++|+.|.++++||.++.  ++++.+......|.++....  ..|++|+.||++
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~DGtv  167 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTV  167 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccCCcE
Confidence            99999999999999999999999999999999999999999765  67888888889999998864  579999999999


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCce--EEEEECCCCCEEEEE
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV--RAMALHPTEDCFASA  361 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v--~~l~~~p~~~~l~~~  361 (485)
                      +.||++.|.......  ..+|++++|+++++..++++.|++|++.|-.+|+.+..+.+|...-  ...+++.....+++|
T Consensus       168 RtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg  245 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG  245 (307)
T ss_pred             EEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec
Confidence            999999987665554  4689999999999999999999999999999999999999988643  345677778899999


Q ss_pred             cCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          362 SAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       362 ~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      ++|+ +++||+.+...+..+.......+..+.+.|.. .|+++.. +.+.+|.
T Consensus       246 SEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  246 SEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             cCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence            9998 99999999999988766556669999999987 5555543 4556664

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-32  Score=235.26  Aligned_cols=287  Identities=22%  Similarity=0.392  Sum_probs=253.7

Q ss_pred             CCCCCcceeecccCC---CCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457          125 ASGKSSAIVSTSASS---ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI  201 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~---~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i  201 (485)
                      ..||+..|+.+.||+   ++-++.++.+|..+.+-+-.    ...-+.++.||.+.|.+..++.+-..-|+++.|-+-+|
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~----tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD----TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC----CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            568999999988874   67788999998887654332    12337789999999999999999889999999999999


Q ss_pred             EECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457          202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIRSYHGHLSGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      ||.-+|..+.+|. |..-|.+++|+.|.++|++|+.+..++|||++..+ ....+.+|.+.|..+.|....+.|++...|
T Consensus        86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd  164 (334)
T KOG0278|consen   86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD  164 (334)
T ss_pred             hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence            9999999999988 88999999999999999999999999999998654 567788999999999999998999999999


Q ss_pred             CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEE
Q 011457          281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS  360 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~  360 (485)
                      ++|++||.+++..++.+. ....|+++.++++|.+|.++ ..+.|.+||..+...+..+.. ...|.+..++|+...+++
T Consensus       165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVa  241 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVA  241 (334)
T ss_pred             CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEe
Confidence            999999999999999997 67899999999999776654 467899999999888887764 456899999999999999


Q ss_pred             EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457          361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      |+.+. ++.||..+++.+..+..+|.++|.|+.|+|+| ..++|+.||+|++|....++..
T Consensus       242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99887 99999999999988778899999999999999 8899999999999998776554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-32  Score=245.96  Aligned_cols=287  Identities=18%  Similarity=0.363  Sum_probs=246.4

Q ss_pred             EEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          168 YRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      +..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+..++..|.+.|..|++..  ..+++++.|++|+.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            45678999999999999977 7899999999999999999999999999999999999987  66899999999999998


Q ss_pred             CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-EEEEEeCCCCE
Q 011457          247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-QVVTGSHDSTI  325 (485)
Q Consensus       247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~I  325 (485)
                      +. ..++++. ..+.+..+.-+..++.++++|.+  |.|||.+...++..+.--...|.++.|+|... .|+++..|+.|
T Consensus       137 ~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  137 DG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             cC-Ccceeee-ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            75 5777776 45667888888888889998865  89999998889999988888999999999765 55667799999


Q ss_pred             EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457          326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG  403 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~  403 (485)
                      .+||++++.++..+.. ...-+.|+|+|.+..|++++.|. ++.||++...........|...+..+.|+|.| -+++|+
T Consensus       213 vLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs  291 (433)
T KOG0268|consen  213 VLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS  291 (433)
T ss_pred             EEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence            9999999998876643 33457899999888899998886 99999998887777778899999999999999 999999


Q ss_pred             CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      .|.+|+||..+.+..-....+       .-...|.++.|+.|.+++++|+.|+.|++|+......
T Consensus       292 yDksIRIf~~~~~~SRdiYht-------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  292 YDKSIRIFPVNHGHSRDIYHT-------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             ccceEEEeecCCCcchhhhhH-------hhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            999999999987765433221       1234599999999999999999999999999765543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-30  Score=251.73  Aligned_cols=278  Identities=21%  Similarity=0.370  Sum_probs=240.5

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      .+-+.|+ ..+.||+|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.++.+.+
T Consensus       180 ~nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             hhHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence            3456677 4556777753 5799999999987666666689999999999999999999999999999999999999988


Q ss_pred             -cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE-eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          258 -HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       258 -h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                       |...|-+++|.  +..+.+|+.|+.|..+|++..+.... +.+|...|+.+.|++++.++++|+.|+.+.|||.....+
T Consensus       258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence             99999999999  57899999999999999998876665 889999999999999999999999999999999998999


Q ss_pred             EeEeccCCCceEEEEECCCC-CEEEEEcCC--C-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE--EeCCCcE
Q 011457          336 MLTLTHHKKSVRAMALHPTE-DCFASASAE--N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT--GGDNGSL  408 (485)
Q Consensus       336 ~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~--~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s--g~~dg~I  408 (485)
                      +..+..|...|.+++|+|-. .+||+|+..  . |++||..++..+..+  .....|..+.|++.. -|++  |..++.|
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v--dtgsQVcsL~Wsk~~kEi~sthG~s~n~i  413 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV--DTGSQVCSLIWSKKYKELLSTHGYSENQI  413 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc--ccCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence            99999999999999999964 566666543  3 999999999988875  456789999999988 3433  5567899


Q ss_pred             EEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          409 WFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       409 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      .||++.+.+....+.        +|...|..++++|||..+++|+.|.++++|++-+....
T Consensus       414 ~lw~~ps~~~~~~l~--------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~  466 (484)
T KOG0305|consen  414 TLWKYPSMKLVAELL--------GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERPK  466 (484)
T ss_pred             EEEeccccceeeeec--------CCcceeEEEEECCCCCEEEEecccCcEEeccccCCCCc
Confidence            999999866655543        68899999999999999999999999999999876433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-31  Score=261.89  Aligned_cols=245  Identities=19%  Similarity=0.406  Sum_probs=204.8

Q ss_pred             EEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC--------------------------------C-------
Q 011457          168 YRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--------------------------------G-------  207 (485)
Q Consensus       168 ~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--------------------------------~-------  207 (485)
                      ...+. +|.+.|.++.|++||+|||+||.|+.|+||.+..                                .       
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34566 8999999999999999999999999999998754                                0       


Q ss_pred             ---------------------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457          208 ---------------------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG  266 (485)
Q Consensus       208 ---------------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~  266 (485)
                                           +++..+.||.+.|.+|.|+.+ ++|++++.|.+|++|++...++++.|. |.+.|+|++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                                 122245789999999999965 589999999999999999999999998 999999999


Q ss_pred             Eec-CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--C-
Q 011457          267 LHP-TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--H-  342 (485)
Q Consensus       267 ~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~-  342 (485)
                      |+| |.+++++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|+....+.......  + 
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            999 67899999999999999998877666555 448999999999999999999999999999998776554321  1 


Q ss_pred             -----CCceEEEEECCCCC--EEEEEcCCCEEEEECCCCceeeeeccCCccc-EEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          343 -----KKSVRAMALHPTED--CFASASAENIKKFNLPKGEFLHNMLSQQKTI-INSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       343 -----~~~v~~l~~~p~~~--~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                           ...|+.+.|.|...  .|++..+..|+|||.++...+..+...++.. -....|+.+| +|+++++|..|++|++
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence                 22799999998654  6666666669999998888888776544432 3456677788 9999999999999997


Q ss_pred             CC
Q 011457          414 KS  415 (485)
Q Consensus       414 ~~  415 (485)
                      ..
T Consensus       576 ~~  577 (712)
T KOG0283|consen  576 DS  577 (712)
T ss_pred             CC
Confidence            43

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.1e-30  Score=262.15  Aligned_cols=270  Identities=29%  Similarity=0.505  Sum_probs=241.7

Q ss_pred             CcccccccccCCCCCCCCCCCCCCcceEEE-EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccC
Q 011457          141 RNLSTSAIMERIPSKWPRPEWHAPWKCYRV-ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ  219 (485)
Q Consensus       141 ~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~-l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~  219 (485)
                      ...+.++..++.+..|...    ....+.. +.||.+.|.+++|...+.+|++|+.|.+++|||+.++++..++.+|.+.
T Consensus       218 ~~~~~~~s~~~tl~~~~~~----~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st  293 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLN----NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS  293 (537)
T ss_pred             cCeEEecCCCceeEEeecc----cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce
Confidence            4556778888888889663    3555666 9999999999999888899999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc
Q 011457          220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG  299 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  299 (485)
                      |.++...  ..++++|+.|.+|++|+++++.++..+.+|.++|.++.++  ++++++|+.|++|++||+.+++++..+.+
T Consensus       294 v~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g  369 (537)
T KOG0274|consen  294 VRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG  369 (537)
T ss_pred             EEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence            9999875  4568889999999999999999999999999999999998  68999999999999999999999999999


Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee
Q 011457          300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL  377 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~  377 (485)
                      |...|.++.+... ..+++|+.|++|++||+++. +++.++.+|..-+..+.+  .++.|++++.++ |++||..+++.+
T Consensus       370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~  446 (537)
T KOG0274|consen  370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL  446 (537)
T ss_pred             CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee
Confidence            9999999988755 89999999999999999999 999999999988865554  578899999888 999999999999


Q ss_pred             eeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 011457          378 HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQA  422 (485)
Q Consensus       378 ~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~  422 (485)
                      +.+...+...+.++.+. +..+++++.||.+++||++++.....+
T Consensus       447 ~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  447 RTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             eeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence            98766566788888887 347999999999999999999887765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=2.3e-30  Score=238.06  Aligned_cols=282  Identities=20%  Similarity=0.318  Sum_probs=251.3

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      ..|+++...|....++||+.|..+.++|..+++.+..+.||...|+.+.|+++...+++++.|..|+||...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            46888888888788999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC
Q 011457          256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG  333 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~  333 (485)
                      ..|..+|+.+..+|+|+||++++.||+..+.|++++.++.....  ..-.+++.+|+|||..|.+|..||.|+|||+..+
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence            89999999999999999999999999999999999998877663  2346899999999999999999999999999999


Q ss_pred             eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 011457          334 KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFW  411 (485)
Q Consensus       334 ~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iw  411 (485)
                      ..+..|.+|.++|..+.|+.+|.+++++++|+ |++||+++.+....+.......+.++.|...| +|+.++.|=+|+++
T Consensus       380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence            99999999999999999999999999999998 99999999998888877777789999999999 99999888777777


Q ss_pred             eCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       412 d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      +-.+.. ......     ...|.+..+++.|....+++++++.|..++++.+
T Consensus       460 ~k~~k~-W~~~~~-----~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  460 KKKTKS-WTEIKE-----LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eccccc-ceeeeh-----hhhcccccceeeecccceEEeeccchhheEEeec
Confidence            644321 111111     1245667889999999999999999999999865

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=4e-31  Score=233.45  Aligned_cols=290  Identities=16%  Similarity=0.278  Sum_probs=247.6

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCC--------------CCCCCcceEEEEecCCcceEEEEEccCCCEE
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRP--------------EWHAPWKCYRVISGHLGWVRSVAFDHSNTWF  190 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~--------------~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l  190 (485)
                      ...|........|+++|.+++|++.|-.+++...+              +....-..+|+|-.|.+.|+++.|+|....|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            34688888899999999999999999888776544              1122346789999999999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cccCCceEEE
Q 011457          191 CTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---HGHLSGVYCL  265 (485)
Q Consensus       191 ~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~~v~~l  265 (485)
                      ++|+.|++|++||+..-...+.++  ....+|+++.|+|.|.+|++|..-.++++||+++.++...-   .+|.+.|+++
T Consensus       188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V  267 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV  267 (430)
T ss_pred             EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence            999999999999997654433222  24578999999999999999999999999999998876554   4699999999


Q ss_pred             EEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCC-ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC
Q 011457          266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHD-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       266 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~  343 (485)
                      .+++.+++.++|+.||.|++||--+++++.++. .|. ..|++..|..+++++++.+.|..+++|.+.+++++..+.+..
T Consensus       268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg  347 (430)
T KOG0640|consen  268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG  347 (430)
T ss_pred             EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence            999999999999999999999999999998876 354 479999999999999999999999999999999999987652


Q ss_pred             C-----ceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          344 K-----SVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       344 ~-----~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      .     --+...|+..+.+++.-....  +.-||.+++.....+..+|++.+..+.-+|.+ .++++++|-.+++|--+
T Consensus       348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            2     123456777777777766553  99999999998888888999999999999999 99999999999999643

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=1.7e-29  Score=253.39  Aligned_cols=265  Identities=16%  Similarity=0.209  Sum_probs=210.7

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceE-------------EEEcccccCEEEEEEcC-CCCEEEEEeCCC
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK-------------LTLTGHIEQVRGLAVSS-KHTYMFSAGDDK  239 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~-------------~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg  239 (485)
                      |-..|+....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4455666667777666777777777777875444322             14678999999999999 788999999999


Q ss_pred             cEEEEECCCC-------eeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC
Q 011457          240 QVKCWDLEQN-------KVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP  311 (485)
Q Consensus       240 ~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  311 (485)
                      +|++||+.++       +.+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+.+|...|.+++|+|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            9999999765       3567888999999999999985 6999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc-eEEEEECCCCCEEEEEcC----C-CEEEEECCCCceeeeec-cCC
Q 011457          312 TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS-VRAMALHPTEDCFASASA----E-NIKKFNLPKGEFLHNML-SQQ  384 (485)
Q Consensus       312 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-v~~l~~~p~~~~l~~~~~----~-~i~i~d~~~~~~~~~~~-~~~  384 (485)
                      ++.+|++++.|+.|++||+++++.+..+..|... +..+.|.+++..+++++.    + .|++||+++........ ...
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~  258 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ  258 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence            9999999999999999999999999888888764 456788888877776542    3 39999998765333322 233


Q ss_pred             cccEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC
Q 011457          385 KTIINSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT  445 (485)
Q Consensus       385 ~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  445 (485)
                      ...+....+++++ +|++|+ .||.|++||+.+++......       ..+...+..++|.|.
T Consensus       259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-------~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS-------YSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee-------ccCCCCCcceEeccc
Confidence            4556667788888 777766 59999999999887654432       123445677778775

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.6e-30  Score=226.89  Aligned_cols=267  Identities=19%  Similarity=0.332  Sum_probs=227.0

Q ss_pred             EEEEeCCCeEEEEECCCC------------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457          190 FCTGSADRTIKIWDVAKG------------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       190 l~tgs~dg~I~iwd~~~~------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      |++|++...|.-+++.-.            .....+..|.++|++++.  ++.|+++|+.|-+|+|||+.....+..+-.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence            667777766666655311            234567789999999998  589999999999999999999999999999


Q ss_pred             cCCceEEEEEecCCC--EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          258 HLSGVYCLGLHPTID--ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       258 h~~~v~~l~~~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                      |.+.|+++.|.++-.  .|++|+.||.|.+|+......+..+++|...|+.++++|.+++-++.+.|+.++.||+-.|+.
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence            999999999999754  899999999999999999999999999999999999999999999999999999999999887


Q ss_pred             EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 011457          336 MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       336 ~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~  415 (485)
                      -..+..... -..+.|+|.|.+|+.+..+.|-+|.+.+......+...  ..+.|+.|...+.|++|++|+.|.+||..+
T Consensus       162 a~v~~L~~~-at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  162 AFVLNLKNK-ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP--KRILCATFLDGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             ceeeccCCc-ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc--ccceeeeecCCceEEEecCCceEEEeccCC
Confidence            665543322 34499999999999999999999999888776654322  557788888888999999999999999998


Q ss_pred             CcccccceeeeccCCCCCCccEEEEEE--ccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          416 GHNFQQAQTIVQPGSLDSEAGIYALSY--DVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      ..+...+.        .|+..|-++.+  .|++.+|+|++.||.|+|||++.....
T Consensus       239 ~~~~~~~~--------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  239 DTPLTEFL--------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             Cccceeee--------cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence            76665554        58888988874  567889999999999999999987544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.5e-31  Score=237.43  Aligned_cols=283  Identities=17%  Similarity=0.289  Sum_probs=246.0

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCC----CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW----HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~----~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      ..+-+.+..|+|+++++++++.|..+.+|+-...    +..++..-.+--|.++|.|+.|+.|...||+|+.||.|+||.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            3445567789999999999999999999985442    233445556667899999999999999999999999999999


Q ss_pred             CCCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          204 VAKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       204 ~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      +.+|.++..|. .|...|+|+.|+.|+..+++++.|.+|++.-+.+|++++.+.+|.+.|+...|.++|+.+++++.||+
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt  371 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT  371 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence            99999999987 79999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceEEEecc--CCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEecc---CCCceEEEEECCCCC
Q 011457          283 CRVWDIRTKMQIFALAG--HDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTH---HKKSVRAMALHPTED  356 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~~~p~~~  356 (485)
                      |++|+..+.+++.+++.  ..-+|.++...|. -..++++...++|.|.++. |+.+..+..   ..+...+.+++|.|.
T Consensus       372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE  450 (508)
T ss_pred             EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc
Confidence            99999999999988873  4557888887775 4578889999999999975 777777753   345677888999999


Q ss_pred             EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          357 CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       357 ~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      ++.+.+.|+ ++.|...+|+....+ ..|...+..++-+|.. .|++-+.||.+++|.
T Consensus       451 wiYcigED~vlYCF~~~sG~LE~tl-~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSVLSGKLERTL-PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEccCcEEEEEEeecCceeeee-ecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999998 899999999987775 4555566677777776 999999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.1e-30  Score=250.69  Aligned_cols=289  Identities=23%  Similarity=0.428  Sum_probs=258.6

Q ss_pred             CCCccccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCC
Q 011457          118 KGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADR  197 (485)
Q Consensus       118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg  197 (485)
                      .........||.+.|.+..++.+..+++++. ...+.+|++.    ..++++++..  +.+.|..|-|.++++++|...|
T Consensus       362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~----t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~G  434 (888)
T KOG0306|consen  362 DRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRD----TLKCIRTITC--GYILASKFVPGDRYIVLGTKNG  434 (888)
T ss_pred             cccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEcc----CcceeEEecc--ccEEEEEecCCCceEEEeccCC
Confidence            3445566778999999999999988877764 4556789774    3788888864  4899999999999999999999


Q ss_pred             eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----C---eeE-----EEecccCCceEE
Q 011457          198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-----N---KVI-----RSYHGHLSGVYC  264 (485)
Q Consensus       198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-----~---~~~-----~~~~~h~~~v~~  264 (485)
                      .+.+||+.+..++.++..|.+.|.+++.+||+..+++||.|.+|++||+.-     +   +.+     +++. ....|.|
T Consensus       435 el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~  513 (888)
T KOG0306|consen  435 ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLC  513 (888)
T ss_pred             ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEE
Confidence            999999999999999999999999999999999999999999999999741     1   111     2222 4578999


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC
Q 011457          265 LGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK  344 (485)
Q Consensus       265 l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  344 (485)
                      +.++||+++|+++--|.+|+||-+++.+....+.||.-+|.|+.++||++.+++||.|.+|++|-+..|.+-..+-.|..
T Consensus       514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD  593 (888)
T KOG0306|consen  514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD  593 (888)
T ss_pred             EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      .|.++.|.|+...|.+++.++ ++.||-.+.+.++.+ .+|...|.|++.+|+| ++++++.|.+|++|....
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ceeEEEEcccceeEEEecCcceEEeechhhhhhheee-ccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            999999999999999999988 999999999988885 6778889999999999 999999999999998654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.4e-30  Score=219.40  Aligned_cols=278  Identities=15%  Similarity=0.296  Sum_probs=226.6

Q ss_pred             EEEEEcc-CCCEEEEEe-------CCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 011457          179 RSVAFDH-SNTWFCTGS-------ADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       179 ~~l~~sp-~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~  247 (485)
                      .++.||| -.++||.+.       ..|.+.|-++...+-+..+.  .-...+..++|+++. +.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            4678888 233343332       35899999986444333332  245789999999865 678899999999999964


Q ss_pred             C-CeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCC
Q 011457          248 Q-NKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDST  324 (485)
Q Consensus       248 ~-~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~  324 (485)
                      . ..+++.++.|...|.++.|++. ...+++++.|++|++||...+..+.++.+|...|....|+|. .+.++++|.||+
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            3 3578899999999999999985 557888899999999999999999999999999999999994 678999999999


Q ss_pred             EEEEECCCCeEEeEeccCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEE
Q 011457          325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLA  400 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~  400 (485)
                      +++||++.......+..|...|.++.|+.- ...+++++.|+ |+.||+++-+.....+.+|.-.|..+.++|..  +|+
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa  251 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA  251 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence            999999875444458889999999999875 45777888887 99999998776655568899999999999987  999


Q ss_pred             EEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEECCCcEEEecC
Q 011457          401 TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       401 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~~Dg~I~iW~~  463 (485)
                      +++.|-+++|||...+........       .|..-|..+.|++ ++.++++++.|+.++||+.
T Consensus       252 SasYDmT~riw~~~~~ds~~e~~~-------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  252 SASYDMTVRIWDPERQDSAIETVD-------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hccccceEEecccccchhhhhhhh-------ccceEEeccccccccCceeeecccccceeeecc
Confidence            999999999999886544332221       3677788999987 5678999999999999984

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.6e-29  Score=252.05  Aligned_cols=228  Identities=19%  Similarity=0.243  Sum_probs=191.5

Q ss_pred             EEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCc
Q 011457          170 VISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQ  240 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~  240 (485)
                      .+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++       +.+..+.+|...|.+++|+|++ ++|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4779999999999999 8899999999999999999765       3467789999999999999985 68999999999


Q ss_pred             EEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc-EEEEEEcCCCCEEEEE
Q 011457          241 VKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT-VCSVFTRPTDPQVVTG  319 (485)
Q Consensus       241 V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~  319 (485)
                      |+|||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..++++
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence            999999999999999999999999999999999999999999999999999999999888765 4567788887777765


Q ss_pred             e----CCCCEEEEECCCCe-EEeEeccC-CCceEEEEECCCCCEEEEEcC-CC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457          320 S----HDSTIKFWDLRYGK-TMLTLTHH-KKSVRAMALHPTEDCFASASA-EN-IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       320 s----~dg~I~iwd~~~~~-~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~-~~-i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      +    .|+.|++||+++.. ++.....+ ...+....|++++.++++++. ++ |++||+.+++.+..........+..+
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~  309 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGL  309 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcce
Confidence            4    47899999998754 33333323 345666788999998887763 44 99999999987766544455667778


Q ss_pred             EeCCCC
Q 011457          392 AVNEEG  397 (485)
Q Consensus       392 ~~~~~~  397 (485)
                      ++.|..
T Consensus       310 ~~~pk~  315 (493)
T PTZ00421        310 CMMPKW  315 (493)
T ss_pred             Eecccc
Confidence            887764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.1e-31  Score=252.02  Aligned_cols=331  Identities=20%  Similarity=0.347  Sum_probs=268.3

Q ss_pred             CCCcccccccccCCCCCCCCCCCCC-C-cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEEc
Q 011457          139 SERNLSTSAIMERIPSKWPRPEWHA-P-WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTLT  214 (485)
Q Consensus       139 ~~~~~~~t~~~~~~~~~w~~~~~~~-~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~  214 (485)
                      +.++++-|++.|.+++.|..+.... + -.....++.|.+||+.++...+++.|+++|.|-+|++|+...+  -++.++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            3445689999999999998776433 1 2347788999999999999999999999999999999999877  5677888


Q ss_pred             ccccCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCC--eeEE--------Eec-ccCCceEEEEEecCCCEEEEEECCCc
Q 011457          215 GHIEQVRGLAV-SSKHTYMFSAGDDKQVKCWDLEQN--KVIR--------SYH-GHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       215 ~h~~~V~~l~~-s~~~~~l~s~~~dg~V~iwd~~~~--~~~~--------~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      .|...|.|+++ .++...+++||-|+.|.+||++++  +.+.        .+. ++...|++++.++.|..|++|+..+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            99999999999 788899999999999999999977  2222        233 78899999999999999999999999


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      +++||.++.+.+..+.+|+..|..+..+++|..+++++.||+|++||+...+++.++..|...|.++..+|+-..+.+|+
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~  274 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG  274 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceee----------ec---
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTI----------VQ---  427 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~----------~~---  427 (485)
                      .++ |+.-|+.+..... .....+.++..+..+... -+-+++.|+.|+-|...-...+......          ..   
T Consensus       275 rd~~i~~Tdl~n~~~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~  353 (735)
T KOG0308|consen  275 RDGNIYRTDLRNPAKST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLT  353 (735)
T ss_pred             CCCcEEecccCCchhhe-EeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcccccc
Confidence            888 8888988753222 234556667777766433 4577888999999976422111100000          00   


Q ss_pred             --cC-CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          428 --PG-SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       428 --~~-~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                        |. ......+|...+.-.|.++++|=...|.+.+||+-.....+
T Consensus       354 ~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~  399 (735)
T KOG0308|consen  354 NTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVE  399 (735)
T ss_pred             CCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehh
Confidence              00 01223345556666778899999999999999987655443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=9.8e-30  Score=230.43  Aligned_cols=277  Identities=23%  Similarity=0.378  Sum_probs=235.5

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC---EEEEEeCCCeEEEEEC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT---WFCTGSADRTIKIWDV  204 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~---~l~tgs~dg~I~iwd~  204 (485)
                      |.+-|.++...  ...+.|+.-|+..++|...     .+....+.||.++|.+++|.-.+.   .|++++.|.++++|..
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEecC-----CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            44555554444  4567788899999999765     488899999999999999865443   5999999999999998


Q ss_pred             CCCceE----EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCeeEEEe
Q 011457          205 AKGTLK----LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE-------------------------QNKVIRSY  255 (485)
Q Consensus       205 ~~~~~~----~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~-------------------------~~~~~~~~  255 (485)
                      +.++..    ....||...|.++...+++..+++|+.|.+|+||+.+                         ++.++-.+
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence            877543    3345999999999999999999999999999999932                         12345667


Q ss_pred             cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-
Q 011457          256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-  334 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-  334 (485)
                      .+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...+.++.++|...+|++|+.|..|++||.+++. 
T Consensus       257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            89999999999998 67899999999999999999999988874 5689999999999999999999999999999763 


Q ss_pred             --EEeEeccCCCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCc-eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457          335 --TMLTLTHHKKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGE-FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW  409 (485)
Q Consensus       335 --~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~  409 (485)
                        ...++.+|...|.++.|+|.+ ..|++++.|+ +++||+++.+ .+..+ ..|+..|.++.|+..+.+++|+.|.+|+
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWNEGGLIVSGGADNKLR  413 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEeccCCceEEeccCcceEE
Confidence              456789999999999999975 4677888887 9999999988 66664 6789999999999999999999999999


Q ss_pred             EEeCC
Q 011457          410 FWDWK  414 (485)
Q Consensus       410 iwd~~  414 (485)
                      ++.-.
T Consensus       414 i~~~~  418 (423)
T KOG0313|consen  414 IFKGS  418 (423)
T ss_pred             Eeccc
Confidence            98643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.1e-30  Score=227.66  Aligned_cols=298  Identities=21%  Similarity=0.366  Sum_probs=253.8

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      .+.+++.+.||.+.|..++.......+.+++.|.+.+||.++++.++.++.||.+.|++++|++.+.++++++.|++..|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            47788999999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEC------CC------------------------------C----eeEEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457          244 WDL------EQ------------------------------N----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC  283 (485)
Q Consensus       244 wd~------~~------------------------------~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i  283 (485)
                      |..      .+                              +    .++..+.+|.+.|.+..|...|+.+++++.|.+.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            951      10                              0    1345678899999999999999999999999999


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      .+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-+. .+++++
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS  375 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS  375 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecC
Confidence            99999999999999999999999999999999999999999999999853 4567899999999999998665 466777


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEE
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYAL  440 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l  440 (485)
                      +|. +++||+++....... ...+..++.++++..+ .++.--++..|++||+.... +..+.   .....+|...|+|+
T Consensus       376 DDrTvKvWdLrNMRsplAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlP---rtsRqgHrRMV~c~  450 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLP---RTSRQGHRRMVTCC  450 (481)
T ss_pred             CCceEEEeeeccccCccee-eecCCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCC---cccccccceeeeee
Confidence            776 999999876543322 2346778899999888 88888889999999987543 33332   22345788899999


Q ss_pred             EEccCC--CEEEEEECCCcEEEecCCCCC
Q 011457          441 SYDVTG--SRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       441 ~~s~~g--~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      +|..+-  .-|+++|.|..+.=|+++...
T Consensus       451 AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  451 AWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eccccCcccccccccccceeeeeEecccC
Confidence            997653  348899999999999987653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.6e-30  Score=237.86  Aligned_cols=278  Identities=21%  Similarity=0.321  Sum_probs=245.6

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG  207 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~  207 (485)
                      |.+.+....+-+....++|++.|+.+..|+.....  .....+|.|-.+.|+.+.|.+++..+++.+.|+.+++|++.+.
T Consensus       174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL  251 (459)
T ss_pred             cccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence            55555666677777889999999999999986644  5678899999999999999999999999999999999999999


Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd  287 (485)
                      +...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+++- ..+.+..|..+  ...+++|-.|+.|++||
T Consensus       252 r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD  328 (459)
T KOG0288|consen  252 RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWD  328 (459)
T ss_pred             hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEe
Confidence            9999999999999999999887779999999999999999998888875 44556666665  45789999999999999


Q ss_pred             CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC----CceEEEEECCCCCEEEEEcC
Q 011457          288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK----KSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----~~v~~l~~~p~~~~l~~~~~  363 (485)
                      .++..+......+. .|+++..+.++..|++++.|.++.++|+++......+....    ...+.+.|+|++.|+++|+.
T Consensus       329 ~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~  407 (459)
T KOG0288|consen  329 IRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA  407 (459)
T ss_pred             ccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence            99999999888654 99999999999999999999999999999988877775432    35788999999999999999


Q ss_pred             CC-EEEEECCCCceeeeeccCCcc-cEEEEEeCCCC-eEEEEeCCCcEEEE
Q 011457          364 EN-IKKFNLPKGEFLHNMLSQQKT-IINSMAVNEEG-VLATGGDNGSLWFW  411 (485)
Q Consensus       364 ~~-i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~sg~~dg~I~iw  411 (485)
                      ++ +++|++.+++....+...+.. .|+++.|++.| .|++++.++.+.+|
T Consensus       408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            98 999999999988877555544 79999999999 99999999999999

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.4e-29  Score=251.42  Aligned_cols=250  Identities=16%  Similarity=0.322  Sum_probs=207.7

Q ss_pred             EEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------------------------------------
Q 011457          210 KLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ----------------------------------------  248 (485)
Q Consensus       210 ~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~----------------------------------------  248 (485)
                      ...+. .|.+.|.++.|++||+|||+||.|+.|+||.+..                                        
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34455 7999999999999999999999999999997643                                        


Q ss_pred             --------------------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457          249 --------------------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF  308 (485)
Q Consensus       249 --------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  308 (485)
                                          .++++.|.||.+.|..|.|+.+ ++|++++.|.+|++|++...+++..|. |.+.|+|++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                                0112446789999999999976 689999999999999999999999997 999999999


Q ss_pred             EcC-CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC---
Q 011457          309 TRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ---  383 (485)
Q Consensus       309 ~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~---  383 (485)
                      |+| |+++|++|+-||.|+||++...+.+.-. ....-|++++|.|+|++.++|+-++ +++|+....+....+...   
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            999 7889999999999999999876655444 3457899999999999999999888 889998877766554211   


Q ss_pred             ----CcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCc
Q 011457          384 ----QKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKT  457 (485)
Q Consensus       384 ----~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~  457 (485)
                          ....|+.+.+.|..  .+++.+.|..|+|||.++...+..++...      ....-....|+.||++|++++.|..
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~------n~~SQ~~Asfs~Dgk~IVs~seDs~  569 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR------NTSSQISASFSSDGKHIVSASEDSW  569 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc------cCCcceeeeEccCCCEEEEeecCce
Confidence                12369999998876  68888999999999998877777776432      2233456789999999999999999


Q ss_pred             EEEecCCCCCC
Q 011457          458 IKMWREDETAT  468 (485)
Q Consensus       458 I~iW~~~~~~~  468 (485)
                      |+||+.+....
T Consensus       570 VYiW~~~~~~~  580 (712)
T KOG0283|consen  570 VYIWKNDSFNS  580 (712)
T ss_pred             EEEEeCCCCcc
Confidence            99999866553

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.7e-29  Score=232.86  Aligned_cols=289  Identities=26%  Similarity=0.415  Sum_probs=243.1

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE----E------------E--cccccCEEEEEEcCCC
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL----T------------L--TGHIEQVRGLAVSSKH  229 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~----~------------~--~~h~~~V~~l~~s~~~  229 (485)
                      ++.+..|.-+|.|++++|++.+.++++.|++|.-|++.+++...    +            .  .+|...|.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            67788999999999999999999999999999999998876331    1            1  2688899999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEE
Q 011457          230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFT  309 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  309 (485)
                      +||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-...+.|++++.|+.|++|++.....+.++.+|.+.|.+|..
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999998


Q ss_pred             cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc---
Q 011457          310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK---  385 (485)
Q Consensus       310 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~---  385 (485)
                      ..-++.+-+|+.|+++++|++. ......+.++.+.+-|++|-.+ ..|++|++++ |.+|++.+.+++......|.   
T Consensus       295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP  372 (479)
T ss_pred             hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccC
Confidence            8888888888899999999994 4455567788889999999855 4566777766 99999999888776543332   


Q ss_pred             --------ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEE-EC
Q 011457          386 --------TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EA  454 (485)
Q Consensus       386 --------~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~~  454 (485)
                              ..|++++..+.. ++++|+.+|.|++|-+..+-. +..+.      .+.-.+.|++++|+++|++|++| +.
T Consensus       373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~------~ls~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY------SLSLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee------ecccccEEEEEEEccCCCEEEEeccc
Confidence                    278999999988 999999999999999988732 22221      12346779999999999966655 45


Q ss_pred             CCcEEEecCC
Q 011457          455 DKTIKMWRED  464 (485)
Q Consensus       455 Dg~I~iW~~~  464 (485)
                      ...+-=|-..
T Consensus       447 EhRlGRW~~~  456 (479)
T KOG0299|consen  447 EHRLGRWWCL  456 (479)
T ss_pred             ccccceeeEe
Confidence            5555555544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.4e-29  Score=216.48  Aligned_cols=273  Identities=18%  Similarity=0.264  Sum_probs=243.2

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~  205 (485)
                      +|...+.++.++.+|..+++++.++.+.+|+....  .+..-...++|.+.|-.++|+| ..+.|++++.|.+|++||..
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecch--hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            46677788889999999999999999999987653  2333345679999999999998 66799999999999999999


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      .+++...+....+.| -+.|+|+|.+++.++.|..|...|.++.+.....+ ..-.+..++|+.++++++.....|+|.|
T Consensus        96 ~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   96 SGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             cCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEE
Confidence            999998887655554 57899999999999999999999999988887776 5667888999988888888888899999


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      .....-+++..++.|.....||.|+|+|++|++|+.|..+.+||+...-+++.+..+.-+|+.+.|+.+|++|++++.|.
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH  253 (313)
T ss_pred             EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457          366 -IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN  405 (485)
Q Consensus       366 -i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d  405 (485)
                       |-|=+.++|..+.++  .+.+....++|+|.. +|+-+++|
T Consensus       254 ~IDIA~vetGd~~~eI--~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  254 FIDIAEVETGDRVWEI--PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eEEeEecccCCeEEEe--eccCCceeEEecCCCceeeEEecC
Confidence             889999999999886  577889999999999 77766655

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.2e-27  Score=201.07  Aligned_cols=295  Identities=19%  Similarity=0.284  Sum_probs=241.4

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---------------eEEEEcccccCEEEEEEcC
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---------------LKLTLTGHIEQVRGLAVSS  227 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---------------~~~~~~~h~~~V~~l~~s~  227 (485)
                      ..|..+..|. -+..|++++|+|.|.+.++|+...+.+|.......               ..+.-+.|.+.|.|.+|+|
T Consensus        21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence            3466666664 56789999999999999999999999997643210               1122345889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCee-----EEEecccCCceEEEEEecC----CCEEEEEEC-CCcEEEEECCCCceEEEe
Q 011457          228 KHTYMFSAGDDKQVKCWDLEQNKV-----IRSYHGHLSGVYCLGLHPT----IDILLTGGR-DSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       228 ~~~~l~s~~~dg~V~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~----~~~l~sg~~-dg~i~iwd~~~~~~~~~~  297 (485)
                      +|.+|++|+.|++|++.-+....+     --.+.-|.+.|..++|..+    +.+|++++. |..|++-|...++..+.+
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            999999999999999987754332     2345679999999999765    446776654 788999999999999999


Q ss_pred             ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC-------CCceEEEEECCCCCEEEEEcCCC-EEEE
Q 011457          298 AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH-------KKSVRAMALHPTEDCFASASAEN-IKKF  369 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~~~l~~~~~~~-i~i~  369 (485)
                      .+|.+-|.++. +-++-++++|+.|.+|++||++-..++.++...       ...|.+++..|.|++|+++-.+. ..+|
T Consensus       180 sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  180 SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            99999998873 336789999999999999999998888876431       24799999999999999999887 9999


Q ss_pred             ECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE
Q 011457          370 NLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR  448 (485)
Q Consensus       370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  448 (485)
                      |++.+..++.+ ..|...|.|+.|+|.. ++++++.|.+|++-|+.. ....++.....   -+|...+..+.|+|..-.
T Consensus       259 dirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv---~ehkdk~i~~rwh~~d~s  333 (350)
T KOG0641|consen  259 DIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVV---AEHKDKAIQCRWHPQDFS  333 (350)
T ss_pred             EeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEE---EeccCceEEEEecCccce
Confidence            99999999986 5788899999999998 999999999999999864 33333332222   257778889999999999


Q ss_pred             EEEEECCCcEEEecCC
Q 011457          449 LVTCEADKTIKMWRED  464 (485)
Q Consensus       449 L~s~~~Dg~I~iW~~~  464 (485)
                      +++.+.|.++.+|.++
T Consensus       334 fisssadkt~tlwa~~  349 (350)
T KOG0641|consen  334 FISSSADKTATLWALN  349 (350)
T ss_pred             eeeccCcceEEEeccC
Confidence            9999999999999875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=4e-29  Score=242.10  Aligned_cols=284  Identities=24%  Similarity=0.441  Sum_probs=238.5

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceE--EEEcccccCEEE-EEEcC-CCCEEEEEeCCC
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK--LTLTGHIEQVRG-LAVSS-KHTYMFSAGDDK  239 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~~h~~~V~~-l~~s~-~~~~l~s~~~dg  239 (485)
                      .+++.+.+.||...|..+++.+ +..++++|.||++++|+-..++..  ..+.+|.+.|.. +++.+ ++-.|++|+.|.
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            4788999999999999999874 457999999999999997555443  457778888877 88875 444699999999


Q ss_pred             cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457          240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      +|.+|.+.+..++..+.+|.+.|+|++...++. +++|+.|.++++|-.  +++...+.+|+..|.++..-|++ .+++|
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTg  157 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTG  157 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEec
Confidence            999999999999999999999999999888876 999999999999975  56677799999999999999887 89999


Q ss_pred             eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEE-eCCCCe
Q 011457          320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA-VNEEGV  398 (485)
Q Consensus       320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~-~~~~~~  398 (485)
                      |.|.+|++|.-  ++.+.++.+|...|+.+++-+++.++-++.++.|+.|++ +|+.+.++ .+|...+.++. ..+++.
T Consensus       158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis~~~~~~~  233 (745)
T KOG0301|consen  158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEM-HGHTNFVYSISMALSDGL  233 (745)
T ss_pred             cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeee-eccceEEEEEEecCCCCe
Confidence            99999999975  788999999999999999998876655555555999999 78888875 67888899999 455559


Q ss_pred             EEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          399 LATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       399 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ++++++|++++||+..  ++.+.+..        ....|+++.+-++| -+++|++||.|+||..+...
T Consensus       234 Ivs~gEDrtlriW~~~--e~~q~I~l--------PttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  234 IVSTGEDRTLRIWKKD--ECVQVITL--------PTTSIWSAKVLLNG-DIVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             EEEecCCceEEEeecC--ceEEEEec--------CccceEEEEEeeCC-CEEEeccCceEEEEEecccc
Confidence            9999999999999876  34433321        23468999888877 47889999999999987544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=4.7e-29  Score=233.88  Aligned_cols=294  Identities=19%  Similarity=0.279  Sum_probs=228.8

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce----EEEE-cccccCEEEEEEcCCCCEEEEEeC
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL----KLTL-TGHIEQVRGLAVSSKHTYMFSAGD  237 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~----~~~~-~~h~~~V~~l~~s~~~~~l~s~~~  237 (485)
                      .|...--.|++|+..|.++++.|.|..|++|+.|.+|++||+.....    ...+ ......|+++.|++.+..|++.+.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            34555667889999999999999999999999999999999864422    1112 223467999999999999999988


Q ss_pred             CCcEEEEECCCCeeEEE------------ecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCc-eEEEec-----
Q 011457          238 DKQVKCWDLEQNKVIRS------------YHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKM-QIFALA-----  298 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~------------~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~-~~~~~~-----  298 (485)
                      ....+|+|-...+.+..            .+||...++|.+|+|.. ..+++++.||+++|||++..+ +...++     
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            89999999664443322            25799999999999974 489999999999999997543 333332     


Q ss_pred             cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE---EeEeccCCC--ceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457          299 GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT---MLTLTHHKK--SVRAMALHPTEDCFASASAEN-IKKFNLP  372 (485)
Q Consensus       299 ~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~--~v~~l~~~p~~~~l~~~~~~~-i~i~d~~  372 (485)
                      +..-.++++.|+++++++++|+.||.|.+||......   ...-..|..  .|++|.|+++|++|++-+.|+ +++||++
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            3345789999999999999999999999999754321   223344555  899999999999999988777 9999998


Q ss_pred             CCceeeeeccC--CcccEEEEEeCCCC-eEEEEeC------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457          373 KGEFLHNMLSQ--QKTIINSMAVNEEG-VLATGGD------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD  443 (485)
Q Consensus       373 ~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~sg~~------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  443 (485)
                      ..+.......+  ....-+.++|+|+. +|++|.+      .|.+++||..+.+.+..+..        ....|..+.|+
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i--------~~aSvv~~~Wh  466 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI--------STASVVRCLWH  466 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC--------CCceEEEEeec
Confidence            76544332222  22345678899999 7777754      47899999888776665542        36679999999


Q ss_pred             cCCCEEEEEECCCcEEEecCC
Q 011457          444 VTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       444 ~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      |.-+.|+.|+.||+++||=-.
T Consensus       467 pkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  467 PKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             chhhheeeecCCCceEEEECc
Confidence            999999999999999987433

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=7e-28  Score=242.85  Aligned_cols=246  Identities=14%  Similarity=0.235  Sum_probs=197.2

Q ss_pred             EeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------eEEEecccCCceE
Q 011457          193 GSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNK--------VIRSYHGHLSGVY  263 (485)
Q Consensus       193 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~--------~~~~~~~h~~~v~  263 (485)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++.        .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            667899999999888888899999999999999997 7899999999999999997642        3456788999999


Q ss_pred             EEEEecCCCE-EEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC
Q 011457          264 CLGLHPTIDI-LLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH  342 (485)
Q Consensus       264 ~l~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  342 (485)
                      +++|+|++.. |++++.|++|++||+++++.+..+. |...|.++.|+++|.+|++++.|+.|+|||+++++.+..+..|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            9999998875 5789999999999999998887776 6678999999999999999999999999999999999999888


Q ss_pred             CCceEE-----EEECCCCCEEEEEcCC-----CEEEEECCC-Cceeeeec-cCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457          343 KKSVRA-----MALHPTEDCFASASAE-----NIKKFNLPK-GEFLHNML-SQQKTIINSMAVNEEG-VLATGGDNGSLW  409 (485)
Q Consensus       343 ~~~v~~-----l~~~p~~~~l~~~~~~-----~i~i~d~~~-~~~~~~~~-~~~~~~i~~~~~~~~~-~l~sg~~dg~I~  409 (485)
                      .+.+.+     ..|++++.++++++.+     .|++||+++ ++.+..+. ......+......+++ ++++|+.|+.|+
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr  288 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR  288 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence            875433     2356888888886655     399999985 45554432 2222334444445557 888999999999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG  446 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  446 (485)
                      +|++..+.. ..+.      ...+..++.+++|.|..
T Consensus       289 ~~e~~~~~~-~~l~------~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        289 YYQHSLGSI-RKVN------EYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEccCCcE-Eeec------ccccCCCccceEEcccc
Confidence            999987632 2221      22355678889999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=7.5e-29  Score=252.10  Aligned_cols=287  Identities=18%  Similarity=0.215  Sum_probs=248.3

Q ss_pred             cceeecccCCCCccccccc--ccCCCCCCCCCCCC-------C-CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeE
Q 011457          130 SAIVSTSASSERNLSTSAI--MERIPSKWPRPEWH-------A-PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTI  199 (485)
Q Consensus       130 ~~i~~~~~~~~~~~~~t~~--~~~~~~~w~~~~~~-------~-~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I  199 (485)
                      ..|.+...+|++..++|++  .|....+|+...-.       . -.+.+..+..|.+.|+|+.|+|||.+||+|+.|+.|
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v   93 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV   93 (942)
T ss_pred             eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence            4488999999999999999  88888899754422       1 245567778999999999999999999999999999


Q ss_pred             EEEECCC------------------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc
Q 011457          200 KIWDVAK------------------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG  261 (485)
Q Consensus       200 ~iwd~~~------------------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~  261 (485)
                      .||....                  .+....+.+|.+.|..++|+|++.+|++++.|++|.|||..+.+.+..+.+|.+.
T Consensus        94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~  173 (942)
T KOG0973|consen   94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL  173 (942)
T ss_pred             EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc
Confidence            9999762                  1366788999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC------ccEEEEEEcCCCCEEEEEeC----CCCEEEEECC
Q 011457          262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD------NTVCSVFTRPTDPQVVTGSH----DSTIKFWDLR  331 (485)
Q Consensus       262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~  331 (485)
                      |..+.|.|-|++|++-+.|++|+||++.+....+.+..+.      ..+.-+.|+|||.+|++.-.    -.++.|.+-.
T Consensus       174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~  253 (942)
T KOG0973|consen  174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG  253 (942)
T ss_pred             ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence            9999999999999999999999999988877777766433      35788999999999987532    3478999988


Q ss_pred             CCeEEeEeccCCCceEEEEECCC-----CC------------EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEe
Q 011457          332 YGKTMLTLTHHKKSVRAMALHPT-----ED------------CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAV  393 (485)
Q Consensus       332 ~~~~~~~~~~~~~~v~~l~~~p~-----~~------------~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~  393 (485)
                      +.+.-..+-+|..++.++.|+|.     ..            .+++|+.|+ |.+|.....+++.....-.+..|..++|
T Consensus       254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW  333 (942)
T KOG0973|consen  254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW  333 (942)
T ss_pred             CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence            88888999999999999999982     11            567788887 9999998888777766666788999999


Q ss_pred             CCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          394 NEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       394 ~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      +||| .|++++.||+|.++.++..
T Consensus       334 spdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  334 SPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             cCCCCeEEEEecCCeEEEEEcchH
Confidence            9999 8999999999999998754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=8.1e-29  Score=227.95  Aligned_cols=277  Identities=19%  Similarity=0.298  Sum_probs=236.9

Q ss_pred             eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE
Q 011457          132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL  211 (485)
Q Consensus       132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~  211 (485)
                      +.+....+..+.+.|++.|+.+.....|.    .+.+..+.||...|+.+.|+|+...+++++.|..|+||.........
T Consensus       222 i~ald~~~s~~~ilTGG~d~~av~~d~~s----~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~  297 (506)
T KOG0289|consen  222 ITALDIIPSSSKILTGGEDKTAVLFDKPS----NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT  297 (506)
T ss_pred             eeEEeecCCCCcceecCCCCceEEEecch----hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence            44445555567788999998888887754    67888999999999999999999999999999999999998888888


Q ss_pred             EEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--cCCceEEEEEecCCCEEEEEECCCcEEEEECC
Q 011457          212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR  289 (485)
Q Consensus       212 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~  289 (485)
                      ....|.++|+.+..+|.|.||++++.||+....|++++.++.....  ..-.+++.+|||||.+|.+|..||.|+|||+.
T Consensus       298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            8899999999999999999999999999999999999988776652  22458999999999999999999999999999


Q ss_pred             CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-CceEEEEECCCCCEEEEEcCCC-EE
Q 011457          290 TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-KSVRAMALHPTEDCFASASAEN-IK  367 (485)
Q Consensus       290 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~~-i~  367 (485)
                      ++..+..|.+|+++|..+.|+.+|-+|++++.|+.|++||+|..+...++.... ..+.++.|.+.|.+++.++.+- |+
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            999999999999999999999999999999999999999999988777775543 4799999999999999985443 55


Q ss_pred             EEECC--CCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          368 KFNLP--KGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       368 i~d~~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      +++-.  +...+..+ ..+.+..+++.|.... ++++++.|..++++.+
T Consensus       458 ~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  458 ICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEecccccceeeehh-hhcccccceeeecccceEEeeccchhheEEeec
Confidence            55432  33444443 4555788899998887 9999999999888754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.3e-28  Score=215.48  Aligned_cols=268  Identities=24%  Similarity=0.351  Sum_probs=213.6

Q ss_pred             cCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CceE-EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011457          173 GHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAK-GTLK-LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       173 ~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~-~~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~  249 (485)
                      .-.+.|.+|+||| ...+++.||.||+||+|+++. +... .....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3468899999999 566777999999999999987 3332 345568999999999999999999999999999999999


Q ss_pred             eeEEEecccCCceEEEEEecCCC--EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          250 KVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       250 ~~~~~~~~h~~~v~~l~~~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                      + +..+..|.++|.++.|-+...  .|++|+.|.+|++||++...++.++. -...+.++..  ..++++++..+..|.+
T Consensus       105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAV  180 (347)
T ss_pred             C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEE
Confidence            5 455667999999999998766  89999999999999999999888887 4566776655  3668999999999999


Q ss_pred             EECCCCeEEeEe--ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce--eeeeccCC--------cccEEEEEeC
Q 011457          328 WDLRYGKTMLTL--THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF--LHNMLSQQ--------KTIINSMAVN  394 (485)
Q Consensus       328 wd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~--~~~~~~~~--------~~~i~~~~~~  394 (485)
                      |+++.+......  ...+-.+++++..++...++.|+-.+ +.+..+..+..  -..+..+.        -..|+.++|+
T Consensus       181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh  260 (347)
T KOG0647|consen  181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH  260 (347)
T ss_pred             EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence            999876443321  22345789999999988888888776 66666655422  22221111        2458899999


Q ss_pred             CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE
Q 011457          395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC  452 (485)
Q Consensus       395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~  452 (485)
                      |.- .|++.+.||.+.+||-.....+...+        .+...|++.+|+.+|.+++-+
T Consensus       261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~--------~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSE--------THPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             cccceEEEecCCceEEEecchhhhhhhccC--------cCCCccceeEecCCCCEEEEE
Confidence            976 99999999999999987766655544        367789999999999998865

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-29  Score=216.07  Aligned_cols=239  Identities=17%  Similarity=0.355  Sum_probs=209.3

Q ss_pred             CCcceEEEEEccC-CCEEEEEeCCCeEEEEECCC-CceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe
Q 011457          174 HLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAK-GTLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNK  250 (485)
Q Consensus       174 H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~  250 (485)
                      -.+.+..++|+++ .+.+++++.||+++|||+.. ..++..++.|...|.++.|++. +..+++++.|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            4678999999984 46789999999999999643 3567888999999999999984 4567788999999999999999


Q ss_pred             eEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEE
Q 011457          251 VIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFW  328 (485)
Q Consensus       251 ~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iw  328 (485)
                      .++++.+|...|+...|+|. .+++++++.|+.+++||++.......+..|...+.++.|+. +.+.|++|+.|+.|++|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            99999999999999999994 78999999999999999987655555888999999999987 55678999999999999


Q ss_pred             ECCCC-eEEeEeccCCCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEe
Q 011457          329 DLRYG-KTMLTLTHHKKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGG  403 (485)
Q Consensus       329 d~~~~-~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~  403 (485)
                      |+++. .++..+.+|.-.|+.+.|+|.. .+|++++.|- +++||...+....+....|...+..+.|+.-.  ++++.+
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g  298 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG  298 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence            99985 4577889999999999999975 5778888886 99999997777766678899999999988754  999999


Q ss_pred             CCCcEEEEe
Q 011457          404 DNGSLWFWD  412 (485)
Q Consensus       404 ~dg~I~iwd  412 (485)
                      .|+.++||+
T Consensus       299 WDe~l~Vw~  307 (311)
T KOG0277|consen  299 WDELLYVWN  307 (311)
T ss_pred             cccceeeec
Confidence            999999997

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.7e-28  Score=237.95  Aligned_cols=324  Identities=19%  Similarity=0.283  Sum_probs=266.1

Q ss_pred             eecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCC-----------CEEEEEeCCCeEEE
Q 011457          133 VSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSN-----------TWFCTGSADRTIKI  201 (485)
Q Consensus       133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~-----------~~l~tgs~dg~I~i  201 (485)
                      +++.|++....+...-.|..+.+|...+-..+.++...| .|...|+.|.--|-+           ..|+|++.|++|++
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l-yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML-YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeee-eccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            445677777666666789999999998877777777665 699999999876621           35999999999999


Q ss_pred             EECCCCceEEEE-------------------------------------cccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          202 WDVAKGTLKLTL-------------------------------------TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       202 wd~~~~~~~~~~-------------------------------------~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      ||+..+..-..+                                     -.....+++++.+|++++|++|..-|+++||
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            998753111100                                     1123568999999999999999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCC-CceEEEeccCCccEEEEEEcCCC--CEEEE
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPTD--PQVVT  318 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~--~~l~s  318 (485)
                      ++...+....+..|.+.|.|+.|+..   .++|+++++|.-|.|||... ...+.++.+|...|+++.|--+|  ..+++
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis  566 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS  566 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence            99999988889999999999999863   46899999999999999864 45678889999999999998777  68899


Q ss_pred             EeCCCCEEEEECCCCeEEeEec-----cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC--CcccEEE
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLT-----HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ--QKTIINS  390 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~--~~~~i~~  390 (485)
                      ++.|..|.+--.........+.     ..+..+..++..|...++++++.|. |++|++.+|+..+.|...  +++....
T Consensus       567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK  646 (1080)
T KOG1408|consen  567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK  646 (1080)
T ss_pred             ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence            9999887654333211111221     2245789999999999999988886 999999999999888654  3466788


Q ss_pred             EEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          391 MAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       391 ~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      +...|.| |+++.+.|.++.++|+.+|+++.+..        +|...|+.+.|.+|-+.|++.+.||.|.||++..
T Consensus       647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--------GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--------GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEEeccchhhhhhc--------CcchheeeeeecccchhheeecCCceEEEEECch
Confidence            8999999 99999999999999999999988764        6889999999999999999999999999999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.4e-28  Score=216.56  Aligned_cols=246  Identities=21%  Similarity=0.331  Sum_probs=207.2

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCC--EEEEEeCCCcEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT--YMFSAGDDKQVK  242 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~V~  242 (485)
                      +.+...+..|.++|++++.+  +.|+|+||.|-+|+|||+.+......+..|.+.|+++.|.++-.  .|++|+.||.|.
T Consensus        33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            45566778999999999995  99999999999999999999999999999999999999998765  899999999999


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD  322 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d  322 (485)
                      +|+....+++..+++|...|+.+++||.+++-++.+.|+.++.||+-.|+.-..+. -...-+.+.|+|.|.+++.+..+
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~  189 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN  189 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc
Confidence            99999999999999999999999999999999999999999999999988766655 23334459999999999888865


Q ss_pred             CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEe--CCCC-eE
Q 011457          323 STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAV--NEEG-VL  399 (485)
Q Consensus       323 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~-~l  399 (485)
                       .|-+|.+.+......+... ..+.++.|...+.+++.+.+..|.+||..+...+..+ ..|...|..+.+  +|++ +|
T Consensus       190 -~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  190 -KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             -EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccceee-ecchhheeeeEEEecCCceEE
Confidence             5899998877666555433 4577777775555444444445999999997777665 678888888884  3445 99


Q ss_pred             EEEeCCCcEEEEeCCCC
Q 011457          400 ATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~  416 (485)
                      +++++||.|++||++..
T Consensus       267 vTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  267 VTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEeccCceEEEEEcccc
Confidence            99999999999999865

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.3e-27  Score=240.87  Aligned_cols=246  Identities=15%  Similarity=0.180  Sum_probs=193.9

Q ss_pred             ccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCCCc--------eEEEEcccc
Q 011457          147 AIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGT--------LKLTLTGHI  217 (485)
Q Consensus       147 ~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~--------~~~~~~~h~  217 (485)
                      ++....+++|....    ...+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.        ....+.+|.
T Consensus        50 GG~~gvI~L~~~~r----~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMR----KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCC----CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence            44566677776543    2467788999999999999996 7899999999999999997642        344678899


Q ss_pred             cCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457          218 EQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA  296 (485)
Q Consensus       218 ~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  296 (485)
                      ..|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++.|+.|+|||+++++.+..
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            99999999999876 4689999999999999998887776 667899999999999999999999999999999999999


Q ss_pred             eccCCccEEEE-----EEcCCCCEEEEEeCCC----CEEEEECCC-CeEEeEecc--CCCceEEEEECCCCCEEEEEcCC
Q 011457          297 LAGHDNTVCSV-----FTRPTDPQVVTGSHDS----TIKFWDLRY-GKTMLTLTH--HKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       297 ~~~~~~~v~~l-----~~~~~~~~l~s~s~dg----~I~iwd~~~-~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      +.+|.+.+.+.     .|++++.+|++++.|+    .|+|||++. .+++..+..  +...+......+++.++++|+.|
T Consensus       205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD  284 (568)
T PTZ00420        205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD  284 (568)
T ss_pred             EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence            99998765433     3457888999988774    799999995 555555433  23334444446668888888777


Q ss_pred             C-EEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457          365 N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       365 ~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  397 (485)
                      + |++|++..+....--...+..+...++|.|..
T Consensus       285 ~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        285 GNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence            6 99999987743222122345667888888875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.1e-29  Score=220.76  Aligned_cols=285  Identities=27%  Similarity=0.430  Sum_probs=246.9

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..||.+.|+..+.....+.+.+++.|.+..+|...    ..+++....||.+.|++|.|++.+.++++++.|++..||..
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E----sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLE----SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeec----cccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            46899999999998889999999999999999874    47899999999999999999999999999999999999972


Q ss_pred             ------CC------------------------------C----ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          205 ------AK------------------------------G----TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       205 ------~~------------------------------~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                            ..                              +    .++..+.+|.+.|.+..|-..|+.+++++.|.+..+|
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW  299 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence                  10                              0    1345678999999999999999999999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS  323 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg  323 (485)
                      |+++++++..+.+|....+.++-+|..+++++.+.|.+.++||++.. ..+..|++|...|+++.|..++ .+++|+.|.
T Consensus       300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDr  378 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDR  378 (481)
T ss_pred             eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCc
Confidence            99999999999999999999999999999999999999999999843 3467889999999999998655 789999999


Q ss_pred             CEEEEECCCCeE-EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee---eeeccCCcccEEEEEeCCCC-
Q 011457          324 TIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL---HNMLSQQKTIINSMAVNEEG-  397 (485)
Q Consensus       324 ~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~-  397 (485)
                      +|++||+++.+. +.++. ...+++.++.+..+..++.--++. +++||++.....   ..-..+|...+.|++|..+- 
T Consensus       379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             eEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence            999999998654 44443 467889999998888888887776 999999755432   22345777889999998776 


Q ss_pred             --eEEEEeCCCcEEEEeCCC
Q 011457          398 --VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       398 --~l~sg~~dg~I~iwd~~~  415 (485)
                        -|++++-|..+.-|++..
T Consensus       458 ~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  458 ACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             ccccccccccceeeeeEecc
Confidence              788999999999998765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.7e-27  Score=209.73  Aligned_cols=254  Identities=16%  Similarity=0.254  Sum_probs=215.5

Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRV  285 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~i  285 (485)
                      +..+.+......|.++.|+++|.+|++++.|.++++||..+++.++++..+...+..++|....+.++.++.  |.+|+.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            444556656789999999999999999999999999999999999999988889999999887777777777  889999


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      .++.+.+.++.+.||...|.+++.+|-+..+++++.|++|++||++..++...+.....+  .++|.|+|-+||++...+
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCC
Confidence            999999999999999999999999999999999999999999999988887766544443  478999999999998885


Q ss_pred             -EEEEECCCC--ceeeee--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEE
Q 011457          366 -IKKFNLPKG--EFLHNM--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA  439 (485)
Q Consensus       366 -i~i~d~~~~--~~~~~~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~  439 (485)
                       |++||++.-  .+...+  ........+.+.|+++| +|+.++..+.+++.|.-+|.....+......+    .. --.
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~----~~-~~~  237 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG----NL-PLS  237 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC----Cc-cee
Confidence             999999864  222222  22446778999999999 89999999999999999999777766543321    11 256


Q ss_pred             EEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          440 LSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       440 l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      .+|+||++++++|+.||+|.+|+++++..
T Consensus       238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  238 ATFTPDSKFVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence            78999999999999999999999987764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-28  Score=229.35  Aligned_cols=246  Identities=25%  Similarity=0.410  Sum_probs=213.2

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~  246 (485)
                      .+.+.-....|.++.|-.||++||.|...|.|+|||+.+...+..+.+|..+|..+.|+|++ ..|++|+.|+.+++||+
T Consensus        61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~  140 (487)
T KOG0310|consen   61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL  140 (487)
T ss_pred             hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence            33455567899999999999999999999999999987777788899999999999999965 56778889999999999


Q ss_pred             CCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          247 EQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       247 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                      .+......+.+|.+.|.|.+|+|.. .++++|++||.|++||++.. ..+..+. |..+|.++.+-|.|.++++++. ..
T Consensus       141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~  218 (487)
T KOG0310|consen  141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NS  218 (487)
T ss_pred             CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-Ce
Confidence            9988866889999999999999964 48999999999999999987 5566665 9999999999999999998774 57


Q ss_pred             EEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE
Q 011457          325 IKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT  401 (485)
Q Consensus       325 I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s  401 (485)
                      |++||+.+| +.+..+..|...|+|+.+..++..|++++-|+ +++||+.+.+.+..+  ...++|.+++++|++ .++.
T Consensus       219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~--~~~~pvLsiavs~dd~t~vi  296 (487)
T KOG0310|consen  219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW--KYPGPVLSIAVSPDDQTVVI  296 (487)
T ss_pred             EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee--ecccceeeEEecCCCceEEE
Confidence            999999965 45555666999999999999999999999887 999998888888775  456789999999988 9999


Q ss_pred             EeCCCcEEEEeCCCCc
Q 011457          402 GGDNGSLWFWDWKSGH  417 (485)
Q Consensus       402 g~~dg~I~iwd~~~~~  417 (485)
                      |..||.+.+-+...++
T Consensus       297 GmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  297 GMSNGLVSIRRREVKK  312 (487)
T ss_pred             ecccceeeeehhhccc
Confidence            9999998887554443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.6e-28  Score=230.38  Aligned_cols=292  Identities=12%  Similarity=0.164  Sum_probs=236.9

Q ss_pred             CccccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEec-CCcceEEEEEccCCCEEEEEeCCCe
Q 011457          120 LNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-HLGWVRSVAFDHSNTWFCTGSADRT  198 (485)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-H~~~V~~l~~sp~~~~l~tgs~dg~  198 (485)
                      ...+...+|+..|.++.+.+.|..+++++.|..+..|.....+...+.++.|.. -...|+++.|++.|+.|++.+....
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            344566788888999999999999999999999999999998888888888874 4568999999999999988888899


Q ss_pred             EEEEECCCCceEEE------------EcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-eEEEe-----cccC
Q 011457          199 IKIWDVAKGTLKLT------------LTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNK-VIRSY-----HGHL  259 (485)
Q Consensus       199 I~iwd~~~~~~~~~------------~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~-~~~~~-----~~h~  259 (485)
                      .+|+|-...+....            -+||...++|.+|+|+. ..+++++.||+++|||+...+ ..+.+     .+..
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            99999544333322            25799999999999965 578899999999999997653 22222     2344


Q ss_pred             CceEEEEEecCCCEEEEEECCCcEEEEECCCCce---EEEeccCCc--cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457          260 SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDN--TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK  334 (485)
Q Consensus       260 ~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~  334 (485)
                      -.++.++|+++++.|++|+.||.|.+|+......   ...-..|..  .|+||.|+++|++|++-+.|+++++||++..+
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            5789999999999999999999999999864322   223346776  99999999999999999999999999999754


Q ss_pred             -EEeEeccC--CCceEEEEECCCCCEEEEEcCC-------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457          335 -TMLTLTHH--KKSVRAMALHPTEDCFASASAE-------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG  403 (485)
Q Consensus       335 -~~~~~~~~--~~~v~~l~~~p~~~~l~~~~~~-------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~  403 (485)
                       ++....+.  ..+-+.++|+|+.++|++|+.-       .+.+||..+...++++.. ....|..+.|+|.- .|++|+
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gs  476 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGS  476 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeec
Confidence             45444433  2356789999999999998542       389999998888888644 36678888899976 899999


Q ss_pred             CCCcEEEEe
Q 011457          404 DNGSLWFWD  412 (485)
Q Consensus       404 ~dg~I~iwd  412 (485)
                      .||.+++|-
T Consensus       477 gdG~~~vyY  485 (641)
T KOG0772|consen  477 GDGTAHVYY  485 (641)
T ss_pred             CCCceEEEE
Confidence            999999974

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-27  Score=232.25  Aligned_cols=259  Identities=23%  Similarity=0.363  Sum_probs=225.0

Q ss_pred             cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCC
Q 011457          150 ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSK  228 (485)
Q Consensus       150 ~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~  228 (485)
                      ...+.+|+...    -+.......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|.  
T Consensus       196 g~~vylW~~~s----~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--  269 (484)
T KOG0305|consen  196 GQSVYLWSASS----GSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--  269 (484)
T ss_pred             cceEEEEecCC----CceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--
Confidence            34456776543    223333444589999999999999999999999999999999999999998 99999999998  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEE
Q 011457          229 HTYMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSV  307 (485)
Q Consensus       229 ~~~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  307 (485)
                      +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|++++++|+.|+.+.|||.....+...+..|...|..+
T Consensus       270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~  349 (484)
T KOG0305|consen  270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL  349 (484)
T ss_pred             CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence            66789999999999999988765554 88999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC-CCCEEEEE--eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC---CEEEEECCCCceeeeec
Q 011457          308 FTRP-TDPQVVTG--SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE---NIKKFNLPKGEFLHNML  381 (485)
Q Consensus       308 ~~~~-~~~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---~i~i~d~~~~~~~~~~~  381 (485)
                      +|+| ....||+|  +.|++|++||..+++.+..+.. ...|.+|.|++..+-|+++...   .|.+|+.++.+.+..+ 
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-  427 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-  427 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-
Confidence            9999 45677775  5699999999999998887753 5689999999999877776433   3999999998877775 


Q ss_pred             cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          382 SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       382 ~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      .+|...|..++++|+| .+++|+.|.++++|++-..
T Consensus       428 ~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  428 LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            7888899999999999 9999999999999998764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=237.15  Aligned_cols=285  Identities=20%  Similarity=0.387  Sum_probs=239.5

Q ss_pred             CCcceE---EEEEc-cCCCEEEEEeCCCeEEEEECCCCc------eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          174 HLGWVR---SVAFD-HSNTWFCTGSADRTIKIWDVAKGT------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       174 H~~~V~---~l~~s-p~~~~l~tgs~dg~I~iwd~~~~~------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      |...|.   .+..+ |.+++|+|||.||.|++|+.....      ...++..|...|+.+....+++.|++++.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            444454   44444 467789999999999999985432      36678889999999999999999999999999999


Q ss_pred             EECCCC--eeEEEecccCCceEEEEE-ecCCCEEEEEECCCcEEEEECCCCc--eE--------EEec-cCCccEEEEEE
Q 011457          244 WDLEQN--KVIRSYHGHLSGVYCLGL-HPTIDILLTGGRDSVCRVWDIRTKM--QI--------FALA-GHDNTVCSVFT  309 (485)
Q Consensus       244 wd~~~~--~~~~~~~~h~~~v~~l~~-~~~~~~l~sg~~dg~i~iwd~~~~~--~~--------~~~~-~~~~~v~~l~~  309 (485)
                      |+...+  -++.++..|...|.|+++ -++...+++||.|+.|.+||++++.  .+        ..+. ++...|.+++.
T Consensus       100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~  179 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM  179 (735)
T ss_pred             eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence            999877  678888899999999999 7788899999999999999999772  22        2233 78889999999


Q ss_pred             cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE
Q 011457          310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       310 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      ++.+..+++|+..+.|++||.++++.+..+.+|...|+.+..++||..+++++.|+ |++||+....++..+ ..|...+
T Consensus       180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH~e~V  258 (735)
T KOG0308|consen  180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVHKEGV  258 (735)
T ss_pred             CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-EeccCce
Confidence            99999999999999999999999999999999999999999999999999999988 999999999999986 4555569


Q ss_pred             EEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          389 NSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       389 ~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      .++..+++- .+++|+.||.|+.=|+++......+-        ..+++|..+..+.+.+-+-+++.|+.|+-|......
T Consensus       259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic--------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~  330 (735)
T KOG0308|consen  259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC--------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI  330 (735)
T ss_pred             EEEeeCCCcceEEecCCCCcEEecccCCchhheEee--------cCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence            999999888 99999999999999998853222221        234567777777655666778889999999876544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.6e-27  Score=208.16  Aligned_cols=266  Identities=22%  Similarity=0.342  Sum_probs=214.5

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      .+.|..+.|+|.++.|++++.||++++||+....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+.++.....
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee
Confidence            5789999999999999999999999999999887777776 899999999987 45699999999999999998876554


Q ss_pred             ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457          255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK  334 (485)
Q Consensus       255 ~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~  334 (485)
                       ..|..+|.|+.+++..+.+++|++|++|++||.+....+..+. ....|.++...  ++.|++|+.|..+.+||+++..
T Consensus        91 -gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   91 -GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             -ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence             4599999999999988899999999999999999866666655 34578888764  7799999999999999999876


Q ss_pred             EEeEec--cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC----ceeeeeccC--------CcccEEEEEeCCCC-e
Q 011457          335 TMLTLT--HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG----EFLHNMLSQ--------QKTIINSMAVNEEG-V  398 (485)
Q Consensus       335 ~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~----~~~~~~~~~--------~~~~i~~~~~~~~~-~  398 (485)
                      ......  ..+-.++++++.|++.-+++++-++ +.+=.+...    +....|..+        .-.+|++++|+|-. .
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence            544322  2345799999999888777777776 444333322    111111111        11469999999976 9


Q ss_pred             EEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          399 LATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       399 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      |++|+.||.|.+||..+.+.+.++..        .+..|.+++|+.+|..||.++.
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl~q~~~--------~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRLKQLAK--------YETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEecCCCceEEEccCcchhhhhhccC--------CCCceEEEEeccCCCeEEEEec
Confidence            99999999999999999888777653        3566999999999999999874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=196.65  Aligned_cols=286  Identities=20%  Similarity=0.295  Sum_probs=231.5

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCC-----------CCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPE-----------WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD  196 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~-----------~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d  196 (485)
                      .+.+|.+..|+|.+.+-+.++..++.++-.-|.           ..+|-.+...-+.|.+.|.|.+|+|+|+++++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            567788888888888877766555544332221           122344455566899999999999999999999999


Q ss_pred             CeEEEEECCCCce-----EEEEcccccCEEEEEEcCC----CCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457          197 RTIKIWDVAKGTL-----KLTLTGHIEQVRGLAVSSK----HTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLG  266 (485)
Q Consensus       197 g~I~iwd~~~~~~-----~~~~~~h~~~V~~l~~s~~----~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~  266 (485)
                      .+|++.-++....     ...+.-|.+.|+.++|-.+    +..|++++ .|..|++-|...|+..+.+.+|.+-|.++ 
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence            9999987654432     2356679999999999743    46777765 57788888999999999999999999877 


Q ss_pred             EecCCCEEEEEECCCcEEEEECCCCceEEEecc--C-----CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457          267 LHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--H-----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL  339 (485)
Q Consensus       267 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  339 (485)
                      ++-++-.+++|+.|.+|++||++-..++.++..  |     .+.|.+++..|.|++|++|-.|....+||++.++.++.+
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f  269 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF  269 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence            344678999999999999999999888887742  2     357999999999999999999999999999999999999


Q ss_pred             ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC---ceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          340 THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG---EFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      ..|...|+++.|+|...++++++.+. |++-|+...   +........|...+..+.|.|.. .+++.+.|.++.+|-+.
T Consensus       270 ~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  270 HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999999999999999987 999988532   22223345677778888899988 88899999999999753

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.7e-28  Score=224.05  Aligned_cols=358  Identities=13%  Similarity=0.164  Sum_probs=272.4

Q ss_pred             cchhhhheeeecccccCcccCCccccccccccccCCCCCCCCCCcccCCCCCCCcchhcc---cccceEEeCCCCCCCCC
Q 011457           44 ESKKIRISHKLNLEYGGIKSTNEPRRQVNSTTIAHRNQPSGSSDVLALPGPEGSRDAQKA---GAQNALVVGPSAQPKGL  120 (485)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  120 (485)
                      ..++.-...|+|.+|.++++.|+|++...+.         ...++..... ....+....   .....++.+.......+
T Consensus       134 ~~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~~---------~~~DDe~e~s-~d~lL~tt~~yi~s~s~~Lp~~tl~~krl  203 (514)
T KOG2055|consen  134 LLSGKEYKGRLREQFQKRYPVPKWAKKASGK---------DSEDDEEEGS-LDDLLKTTVGYIDSRSKLLPPGTLNIKRL  203 (514)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCccccccccc---------cccccccccc-HHHHHHhhhcccccccccCCCceeeeEee
Confidence            3455556678999999999999998874321         0111000000 000000000   01111222222222233


Q ss_pred             ccccC-CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC-EEEEEeCCCe
Q 011457          121 NNVGA-SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRT  198 (485)
Q Consensus       121 ~~~~~-~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~  198 (485)
                      .+..+ ....+.|.+..|+|..+++.+++.|+.++++.......+  .+..+.--..+|.+.+|.|+|. .+++++....
T Consensus       204 kDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  204 KDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             cccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccceE
Confidence            33222 223467899999999999999999999999988765444  5666666788999999999999 8999999999


Q ss_pred             EEEEECCCCceEE--EEcccc-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE
Q 011457          199 IKIWDVAKGTLKL--TLTGHI-EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL  275 (485)
Q Consensus       199 I~iwd~~~~~~~~--~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  275 (485)
                      .+.||+.+.+...  .+.++. ..+.....++++++|+..|..|.|.+....+++.+.+++ -.+.|..++|+.+++.|+
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~  360 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELL  360 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEE
Confidence            9999998886543  334443 467788899999999999999999999999999999997 678899999999999999


Q ss_pred             EEECCCcEEEEECCCCceEEEeccCCc-cEEEEEEcCCCCEEEEEeCCCCEEEEECCC------CeEEeEeccCCCceEE
Q 011457          276 TGGRDSVCRVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSHDSTIKFWDLRY------GKTMLTLTHHKKSVRA  348 (485)
Q Consensus       276 sg~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~------~~~~~~~~~~~~~v~~  348 (485)
                      +++.+|.|.+||++...+++.+....+ .-++++.++++.+|++|+..|.|.|||..+      .+++..+......|++
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its  440 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS  440 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence            999999999999999999988874222 235678889999999999999999999653      4567777777789999


Q ss_pred             EEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccC--CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          349 MALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      +.|+++..+|+.++...   +++..+++.....++...  .-+.++|++|+|.+ +|+.|..+|.+.+|.+.
T Consensus       441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99999999999988764   999999998887776433  23679999999977 99999999999999864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=7e-28  Score=225.26  Aligned_cols=278  Identities=18%  Similarity=0.335  Sum_probs=235.2

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC---ceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG---TLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      .|..-|.++.++...++++||+. |.|+|||+...   ..+..+.  ...+.|+++.+.|||+.|++|++-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            68899999999999999999976 78999998643   2233332  245789999999999999999999999999997


Q ss_pred             CCee--EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457          248 QNKV--IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI  325 (485)
Q Consensus       248 ~~~~--~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I  325 (485)
                      ....  ...+..-.-..++++.+||.++.++++.||.|.|||+++...+..|++|.+.+.||.++++|..|.+|+-|.+|
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            6543  33344344567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe
Q 011457          326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG  403 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~  403 (485)
                      |.||++.++.+.... ....|.++.++|++.+++.|-.++ +.+......+..  .+..|+..|.++.|.+-| ++++.+
T Consensus       576 RcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky--qlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  576 RCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY--QLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             eehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce--eecccccEEEEEEecccCceeeecC
Confidence            999999988766543 356799999999999999998876 766665444322  356788999999999999 999999


Q ss_pred             CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .|..+..|...-|..+.+.+         ....|.++.++.|.++++||+.|+.-.||.+
T Consensus       653 kDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             chhhhhhccCccccceeecc---------ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999988887665544         3567999999999999999999998888865

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2e-27  Score=230.38  Aligned_cols=274  Identities=19%  Similarity=0.390  Sum_probs=234.0

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEE-EEEcc-CCCEEEEEeCCCeEEEEEC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRS-VAFDH-SNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~-l~~sp-~~~~l~tgs~dg~I~iwd~  204 (485)
                      +|...+..+... ++..+.+++.|+++++|.+..  ..|-....+.+|.+.|.+ ++|-+ ++..+++|+.|.+|.+|..
T Consensus        12 gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~--~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~   88 (745)
T KOG0301|consen   12 GHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKG--KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL   88 (745)
T ss_pred             cCccchheeEec-CCeEEeecCCCCceeeeeccC--cccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence            455444433322 233567788899999998754  456666788899999998 88886 5556999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      ....+..++.+|.+.|.++....++. +++|+.|.++++|-.  +++...+.+|...|+++...|++ .++||+.|.+|+
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIk  164 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIK  164 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceee
Confidence            99999999999999999999888887 999999999999965  56777799999999999999987 899999999999


Q ss_pred             EEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457          285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      +|.-  ++.+.++.+|.+.|..+++-++. .|++++.||.|++|++ +++.+..+.+|..-|.++....++..+++++.|
T Consensus       165 lWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED  240 (745)
T KOG0301|consen  165 LWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED  240 (745)
T ss_pred             eccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC
Confidence            9975  77899999999999999998764 6889999999999999 799999999999999999988888888888888


Q ss_pred             C-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          365 N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       365 ~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      + +++|+..  ++.+.+ ......|.++.+-++|-+++|++||.|+||...
T Consensus       241 rtlriW~~~--e~~q~I-~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  241 RTLRIWKKD--ECVQVI-TLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ceEEEeecC--ceEEEE-ecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            7 9999976  444443 455567888888889999999999999999876

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.8e-28  Score=218.88  Aligned_cols=283  Identities=18%  Similarity=0.334  Sum_probs=241.9

Q ss_pred             CCCCcceeecccCCCC-cccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          126 SGKSSAIVSTSASSER-NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~-~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      .||.+.|.+++-+|.. ..+++++.|+.+.+|+...    ..+++.++.|.|.|+.|+++.  ..+++++.|.+|+.|.+
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhh----hhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            6899999999999887 7789999999999998744    678899999999999999986  67899999999999997


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVC  283 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i  283 (485)
                      .- ....++.+ .+.+..+.-+..+..++|||+  .|.|||.+...+++.+.-....|.++.|+|.. .+|++++.|+.|
T Consensus       137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            64 56666664 466777877777888999986  49999999999999998888899999999965 477788899999


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      .+||+++..++..+. ....-..|+|+|..-.|++++.|..++.||++.. .++....+|.+.|.++.|+|.|.-|++|+
T Consensus       213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs  291 (433)
T KOG0268|consen  213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS  291 (433)
T ss_pred             EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence            999999999887765 3556678999998888999999999999999974 46778889999999999999999999999


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      -|. |++|..+.+..-..........|.|+.|+.|. ++++|++|+.|++|...-.+.+
T Consensus       292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            998 99999988765444444445679999999999 9999999999999987654443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.7e-27  Score=218.74  Aligned_cols=256  Identities=21%  Similarity=0.359  Sum_probs=223.8

Q ss_pred             EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----E-------------e-cccCCceEEEEEecCC
Q 011457          210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR----S-------------Y-HGHLSGVYCLGLHPTI  271 (485)
Q Consensus       210 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~----~-------------~-~~h~~~v~~l~~~~~~  271 (485)
                      ...+..|.-+|.+++++|++.+.++++.|++|.-|++.+++..+    .             - ++|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            45567799999999999999999999999999999998886331    1             0 2688889999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEE
Q 011457          272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMAL  351 (485)
Q Consensus       272 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~  351 (485)
                      ++|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++.+|...|.+|..
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeecc--
Q 011457          352 HPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQP--  428 (485)
Q Consensus       352 ~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~--  428 (485)
                      ...++.+.+++.|. +++|+++....+  ++.++.+.+.|++|-.+..+++|++||.|.+|++...+++.........  
T Consensus       295 L~reR~vtVGgrDrT~rlwKi~eesql--ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  295 LSRERCVTVGGRDRTVRLWKIPEESQL--IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP  372 (479)
T ss_pred             hcccceEEeccccceeEEEecccccee--eeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccC
Confidence            99999999997776 999999655433  3567788899999999999999999999999999988877665432211  


Q ss_pred             --CCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          429 --GSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       429 --~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                        ...++...|++++..|...++++|+.+|.|++|.+.++.
T Consensus       373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             CccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence              112334589999999999999999999999999999884

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.8e-26  Score=202.78  Aligned_cols=288  Identities=16%  Similarity=0.291  Sum_probs=224.2

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE--EE--cccccCEEEEEEcCCCCEE-EEEeCCCcEE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TL--TGHIEQVRGLAVSSKHTYM-FSAGDDKQVK  242 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~--~~--~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~  242 (485)
                      +.+|++|.+.|++++|+.||++|+|++.|++|+||++.+.....  .+  .-..+.-+.+.|.||-+-+ +++-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            56789999999999999999999999999999999997653221  11  1122356789999987654 4555667899


Q ss_pred             EEECCCC---eeEEE--------e-cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEc
Q 011457          243 CWDLEQN---KVIRS--------Y-HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR  310 (485)
Q Consensus       243 iwd~~~~---~~~~~--------~-~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  310 (485)
                      +|.+...   .....        + +.|.-.+..+-.-.++.+|++++.|..|.+||++ |+.+..+......-+..+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            9976432   11111        1 2356677777778888999999999999999999 88888888777778888999


Q ss_pred             CCCCEEEEEeCCCCEEEEECCCC--------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC-------
Q 011457          311 PTDPQVVTGSHDSTIKFWDLRYG--------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG-------  374 (485)
Q Consensus       311 ~~~~~l~s~s~dg~I~iwd~~~~--------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~-------  374 (485)
                      |+|+++++++..--|++|.+-.+        +.+..+.+|...|..++|+++...+++.+.|+ +++||..-.       
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence            99999999999999999986432        24567899999999999999999999999998 999997421       


Q ss_pred             ceeeee---ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457          375 EFLHNM---LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       375 ~~~~~~---~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                      +.+...   +....+....+..+|+|.+++.+....+++|..++|+....+..       -|+..|.+++|+++|++++|
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~-------~h~~~Is~is~~~~g~~~at  390 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELED-------IHSTTISSISYSSDGKYIAT  390 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHH-------hhcCceeeEEecCCCcEEee
Confidence            112211   11223344589999999666666677999999999988777664       47889999999999999999


Q ss_pred             EECCCcEEEecCC
Q 011457          452 CEADKTIKMWRED  464 (485)
Q Consensus       452 ~~~Dg~I~iW~~~  464 (485)
                      +| |..+++..-.
T Consensus       391 cG-dr~vrv~~nt  402 (420)
T KOG2096|consen  391 CG-DRYVRVIRNT  402 (420)
T ss_pred             ec-ceeeeeecCC
Confidence            87 6788888643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.1e-26  Score=227.82  Aligned_cols=276  Identities=16%  Similarity=0.266  Sum_probs=232.1

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC-ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      +|++.-+.|+|.|+|++|++++.||.|++|+..+. +...++..+...|.+++..  ..+|++|+.+++|.+|.+.+++.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence            79999999999999999999999999999998766 4445555577788887764  45899999999999999998876


Q ss_pred             EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457          252 IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR  331 (485)
Q Consensus       252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~  331 (485)
                      -..+....-++.+++|+-+|++++.|+.|-.|++.++.+......+.+|..+|.++.|+|++++|++.+.||.|++||+.
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            66666677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEeEeccC--------CCceEEEEECCCCCEE-EEEcCCCEEEEECCCCceeeeeccCCc-ccEEEEEeCCCC-eEE
Q 011457          332 YGKTMLTLTHH--------KKSVRAMALHPTEDCF-ASASAENIKKFNLPKGEFLHNMLSQQK-TIINSMAVNEEG-VLA  400 (485)
Q Consensus       332 ~~~~~~~~~~~--------~~~v~~l~~~p~~~~l-~~~~~~~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~  400 (485)
                      ++....++.+-        ...+..++|+|++..| +.+.++.|++|+...++....+...+. ..++++.|+|+| |||
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence            98876665431        3456788999995555 455555599999999988887765544 349999999999 999


Q ss_pred             EEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          401 TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       401 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      +++.||.|.|||+++-+. .           .....|++++|.|+++.|-.-..-|...+|-
T Consensus       249 As~~~g~I~vWnv~t~~~-~-----------~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~  298 (933)
T KOG1274|consen  249 ASTLDGQILVWNVDTHER-H-----------EFKRAVCCEAWKPNANAITLITALGTLGVSP  298 (933)
T ss_pred             eeccCCcEEEEecccchh-c-----------cccceeEEEecCCCCCeeEEEeeccccccCh
Confidence            999999999999987222 1           2345799999999998877666666665553

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=4e-25  Score=211.85  Aligned_cols=280  Identities=15%  Similarity=0.170  Sum_probs=214.6

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEecccCCceEEE
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM-FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL  265 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l  265 (485)
                      +..+++++.|+.|++||+.+++....+..+. .+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            3578899999999999999999888887654 46789999999876 5667889999999999988887765433 5678


Q ss_pred             EEecCCCEEEEE-ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC-CEEEEECCCCeEEeEeccCC
Q 011457          266 GLHPTIDILLTG-GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS-TIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       266 ~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~  343 (485)
                      +|+|+++.++++ +.|+.|++||+++.+.+..+.. ...+.++.|+|++.++++++.++ .+.+||..+++....+.. .
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~  156 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D  156 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence            999999977655 5689999999999887777652 34568899999999999988775 467789988877655433 2


Q ss_pred             CceEEEEECCCCCEEEEEc-CCC-EEEEECCCCceeeeeccCC------cccEEEEEeCCCC-e-EEEEeCCCcEEEEeC
Q 011457          344 KSVRAMALHPTEDCFASAS-AEN-IKKFNLPKGEFLHNMLSQQ------KTIINSMAVNEEG-V-LATGGDNGSLWFWDW  413 (485)
Q Consensus       344 ~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~-l~sg~~dg~I~iwd~  413 (485)
                      .....+.|+|++.+++.++ .++ +.+||+.+++.+..+....      ......+.+++++ + +++.+.++.|.+||.
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence            3457899999999886554 344 9999999988766542111      1123467889998 4 344556778999999


Q ss_pred             CCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE-ECCCcEEEecCCCCCCCCCCCCCCCCC
Q 011457          414 KSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EADKTIKMWREDETATPETHPLNFKPP  479 (485)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~~Dg~I~iW~~~~~~~~~~~~~~~~p~  479 (485)
                      .+++......         +...+.+++|+|+|++|+++ +.+|.|++||+.+.......++...|.
T Consensus       237 ~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  294 (300)
T TIGR03866       237 KTYEVLDYLL---------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPW  294 (300)
T ss_pred             CCCcEEEEEE---------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccc
Confidence            8876554321         23468899999999999886 468999999999988766666665553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=2.5e-26  Score=219.19  Aligned_cols=306  Identities=21%  Similarity=0.310  Sum_probs=238.9

Q ss_pred             CCCCCCCCCCCCc--ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCC
Q 011457          153 PSKWPRPEWHAPW--KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT  230 (485)
Q Consensus       153 ~~~w~~~~~~~~~--~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~  230 (485)
                      ++.-+.|..-.||  .+...+.||++.|+||..+|.|.+|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|.+.
T Consensus       376 iPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~  454 (733)
T KOG0650|consen  376 IPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD  454 (733)
T ss_pred             cccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC
Confidence            3344555555544  5667788999999999999999999999999999999999999999887 457899999999764


Q ss_pred             --EEEEEeCCCcEEEEECCCC-------------------------------------eeEEEecccCCceEEEEEecCC
Q 011457          231 --YMFSAGDDKQVKCWDLEQN-------------------------------------KVIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       231 --~l~s~~~dg~V~iwd~~~~-------------------------------------~~~~~~~~h~~~v~~l~~~~~~  271 (485)
                        .|+++-. ..+.|-+..-|                                     .-++..-.|...|..+.||..|
T Consensus       455 ~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  455 LCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             ceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence              3444332 33444432211                                     0112223478899999999999


Q ss_pred             CEEEEEECC---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEE
Q 011457          272 DILLTGGRD---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRA  348 (485)
Q Consensus       272 ~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~  348 (485)
                      ++|++...+   ..|.|+++.......-|.-..+.|.++.|+|...+|++++. ..|+|||+.....+..+......|..
T Consensus       534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~  612 (733)
T KOG0650|consen  534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISS  612 (733)
T ss_pred             ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeee
Confidence            999998764   46899999877766667667789999999999999999875 67999999988888888777888999


Q ss_pred             EEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc------cc
Q 011457          349 MALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN------FQ  420 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~------~~  420 (485)
                      ++++|.|..|+.++.++ +..||+.-+....+.+..|...+..+++++.- ++++|+.||.+.||.-.--..      +.
T Consensus       613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV  692 (733)
T KOG0650|consen  613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV  692 (733)
T ss_pred             eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence            99999999999998887 88999988877777778899999999999988 999999999999985321111      11


Q ss_pred             cceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      .++.+ .........+|..+.|+|...+|+++|.||+|++|.
T Consensus       693 PlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  693 PLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             eeeec-cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            11111 001112345699999999999999999999999993

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.7e-25  Score=221.10  Aligned_cols=307  Identities=15%  Similarity=0.265  Sum_probs=259.9

Q ss_pred             cccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEE
Q 011457          144 STSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGL  223 (485)
Q Consensus       144 ~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l  223 (485)
                      +.-++..+...+|+..    ..+.+.+++++...|+++.=+|-=+.+|.|..+|+|.|++++.++.+.+|+...+.|+++
T Consensus       175 IvvGs~~G~lql~Nvr----t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl  250 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVR----TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL  250 (910)
T ss_pred             EEEeecCCcEEEEEec----cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE
Confidence            4455677778888773    478999999999999999999999999999999999999999999999999556999999


Q ss_pred             EEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEec----------------------------------------------
Q 011457          224 AVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYH----------------------------------------------  256 (485)
Q Consensus       224 ~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~----------------------------------------------  256 (485)
                      +|..||+. +++|+..|.+.+||++..+.+....                                              
T Consensus       251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R  330 (910)
T KOG1539|consen  251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR  330 (910)
T ss_pred             EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence            99999865 5666777999999997433221000                                              


Q ss_pred             -c------------------------------------------------------------------------------
Q 011457          257 -G------------------------------------------------------------------------------  257 (485)
Q Consensus       257 -~------------------------------------------------------------------------------  257 (485)
                       |                                                                              
T Consensus       331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~  410 (910)
T KOG1539|consen  331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE  410 (910)
T ss_pred             cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence             0                                                                              


Q ss_pred             ------------------------------cC------CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---c
Q 011457          258 ------------------------------HL------SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---A  298 (485)
Q Consensus       258 ------------------------------h~------~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~  298 (485)
                                                    +.      ..+++++.++.|++.+.|...|.|-+|++.+|-....+   .
T Consensus       411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~  490 (910)
T KOG1539|consen  411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP  490 (910)
T ss_pred             hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence                                          22      45778888888999999999999999999988877777   4


Q ss_pred             cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee
Q 011457          299 GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL  377 (485)
Q Consensus       299 ~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~  377 (485)
                      .|..+|+.++...-++.+++++.+|.+++||......+..+.. ...+.++..+.....++.+.++- |.++|..+.+.+
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv  569 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV  569 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence            7999999999999899999999999999999998877666653 55688888888888888887776 999999999988


Q ss_pred             eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-
Q 011457          378 HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-  455 (485)
Q Consensus       378 ~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-  455 (485)
                      +.+ .+|...|+.+.|+|+| +|++++.|++|++||+.++.++..+.         -...++.+.|+|+|.+|||+..| 
T Consensus       570 R~f-~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~---------vd~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  570 REF-WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL---------VDSPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             HHh-hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe---------cCCcceeeEECCCCCEEEEEEecC
Confidence            886 6789999999999999 99999999999999999998877654         35678999999999999999988 


Q ss_pred             CcEEEecCCC
Q 011457          456 KTIKMWREDE  465 (485)
Q Consensus       456 g~I~iW~~~~  465 (485)
                      .-|++|.-..
T Consensus       640 ~gIylWsNks  649 (910)
T KOG1539|consen  640 NGIYLWSNKS  649 (910)
T ss_pred             ceEEEEEchh
Confidence            6799997543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-26  Score=198.89  Aligned_cols=256  Identities=21%  Similarity=0.318  Sum_probs=204.3

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC---ceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG---TLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iw  244 (485)
                      .-..|.+.|..+..+--|..|||++.|++|+|+.....   +++.++.+|.++|..++|..  .|.+|++++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            34589999999999989999999999999999998755   46789999999999999986  78999999999999999


Q ss_pred             ECCCCeeE--EEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCC---ceEEEeccCCccEEEEEEcCC---C-
Q 011457          245 DLEQNKVI--RSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTK---MQIFALAGHDNTVCSVFTRPT---D-  313 (485)
Q Consensus       245 d~~~~~~~--~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~---~-  313 (485)
                      .-++++-.  ..+..|...|++++|-|.  |-.|++++.||.|.|.+.+..   ........|.-.|++++|.|.   | 
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            98887543  344679999999999986  568999999999999998764   223445679999999999986   4 


Q ss_pred             ----------CEEEEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec
Q 011457          314 ----------PQVVTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML  381 (485)
Q Consensus       314 ----------~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~  381 (485)
                                +.|++|+.|..|+||+...+.  ...++.+|..-|+.++|.|.-.                         
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g-------------------------  220 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG-------------------------  220 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC-------------------------
Confidence                      469999999999999987652  2334677777777777776421                         


Q ss_pred             cCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       382 ~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                                  .+..+|++++.||++.||............ ..    ......+..++||..|+.|+.++.|+.|.+|
T Consensus       221 ------------l~~s~iAS~SqDg~viIwt~~~e~e~wk~t-ll----~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  221 ------------LPKSTIASCSQDGTVIIWTKDEEYEPWKKT-LL----EEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             ------------CCceeeEEecCCCcEEEEEecCccCccccc-cc----ccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence                        011279999999999999876221111111 11    1245679999999999999999999999999


Q ss_pred             cCCCCC
Q 011457          462 REDETA  467 (485)
Q Consensus       462 ~~~~~~  467 (485)
                      +.+...
T Consensus       284 ke~~~G  289 (299)
T KOG1332|consen  284 KENVDG  289 (299)
T ss_pred             EeCCCC
Confidence            987654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=4.2e-26  Score=211.81  Aligned_cols=243  Identities=23%  Similarity=0.371  Sum_probs=203.1

Q ss_pred             ecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCCc----------eEEEEcccccCEEEEEEcCCC-CEEEEEeCCC
Q 011457          172 SGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGT----------LKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDK  239 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~~----------~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg  239 (485)
                      -.|.+.|+.+.+-|.+ ..+|+++..+.|.|||..+..          ...++.+|...-..|+|++.. -+|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3699999999999965 466778888999999986432          233788999888899999854 4789999999


Q ss_pred             cEEEEECCCCe-------eEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECC--CCceEEEeccCCccEEEEEE
Q 011457          240 QVKCWDLEQNK-------VIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIR--TKMQIFALAGHDNTVCSVFT  309 (485)
Q Consensus       240 ~V~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~  309 (485)
                      +|++||+....       ....+.+|...|..++|++. .++|++++.|+.+.|||+|  +.++.....+|...|.|+.|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            99999996542       34567899999999999995 5688999999999999999  56667778899999999999


Q ss_pred             cC-CCCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCCcee--------
Q 011457          310 RP-TDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKGEFL--------  377 (485)
Q Consensus       310 ~~-~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~--------  377 (485)
                      +| ++..|++||.|++|.+||+|+. +++.++.+|...|..+.|+|... .|++++.|+ +.+||+..-...        
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d  360 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED  360 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence            99 4567889999999999999984 56889999999999999999865 666777666 999999643222        


Q ss_pred             -----eeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCC
Q 011457          378 -----HNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       378 -----~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~  414 (485)
                           .-+..+|...|+.+.|+|+.  .+++.++|+.+.||.+.
T Consensus       361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 13356888899999999998  89999999999999976

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=6e-26  Score=220.10  Aligned_cols=337  Identities=19%  Similarity=0.251  Sum_probs=263.5

Q ss_pred             CCCCCcceeecccCCCC---cccccccccCCCCCCCCCCCC-----------------CCcceE----------EEEecC
Q 011457          125 ASGKSSAIVSTSASSER---NLSTSAIMERIPSKWPRPEWH-----------------APWKCY----------RVISGH  174 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~---~~~~t~~~~~~~~~w~~~~~~-----------------~~~~~~----------~~l~~H  174 (485)
                      ..||.+-|.+++|...+   -++++++.|+.+++|....+.                 +.+...          ..+.||
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            45899999998877644   378999999999999744333                 111222          234499


Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eE-----EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LK-----LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~-----~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      .++|.++.|+|.+..|++++.|.++.+|...+..  -+     ..+.+.........|+|+++.+++-+..|-.++|...
T Consensus       267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~  346 (764)
T KOG1063|consen  267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK  346 (764)
T ss_pred             ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence            9999999999999999999999999999876542  11     1223445568899999999999999999999999833


Q ss_pred             CC---eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc----eEEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457          248 QN---KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM----QIFALAGHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       248 ~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      +.   .....+.||...|..++|+|.|.+|++.+.|.+-|+|---..+    .+..-+-|...++|+++-+....+++|.
T Consensus       347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA  426 (764)
T KOG1063|consen  347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA  426 (764)
T ss_pred             CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence            32   2334457999999999999999999999999999998754211    2223345888899999988777899999


Q ss_pred             CCCCEEEEECCCC-------------------------------------------------------------------
Q 011457          321 HDSTIKFWDLRYG-------------------------------------------------------------------  333 (485)
Q Consensus       321 ~dg~I~iwd~~~~-------------------------------------------------------------------  333 (485)
                      ....+|+|+....                                                                   
T Consensus       427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E  506 (764)
T KOG1063|consen  427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE  506 (764)
T ss_pred             cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence            9999999975211                                                                   


Q ss_pred             ---------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC------EEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457          334 ---------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-  397 (485)
Q Consensus       334 ---------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-  397 (485)
                               ..+..+.+|...|.+++.+|+++++++++...      |.+|+..+....+. +..|.-.|+.+.|+||+ 
T Consensus       507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~-L~~HsLTVT~l~FSpdg~  585 (764)
T KOG1063|consen  507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE-LEGHSLTVTRLAFSPDGR  585 (764)
T ss_pred             HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe-ecccceEEEEEEECCCCc
Confidence                     01112456788899999999999999987653      99999988887775 47889999999999999 


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      +|++.+.|.++.+|..........- .   .....|..-|.++.|+|++.+|+|++.|++|+||...+.
T Consensus       586 ~LLsvsRDRt~sl~~~~~~~~~e~~-f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  586 YLLSVSRDRTVSLYEVQEDIKDEFR-F---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEEeecCceEEeeeeecccchhhh-h---ccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            9999999999999998554332211 0   012357888999999999999999999999999999877

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2e-24  Score=209.36  Aligned_cols=240  Identities=23%  Similarity=0.346  Sum_probs=204.7

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCC-cceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHL-GWVRSVAFDHSNTWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~  206 (485)
                      ....|++.+++.+.+.+|.+..+..+.+|+...   .|-+..++.|+. ..|-+++|++ +..|++.+.+|.|.-||+.+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence            457789999999999999999999999998754   677788888775 5799999995 55588888999999999999


Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--EecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR--SYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      ++.+..+....+.|.+++.+|.+..++.|++||.+..++...++...  .+....+.|.+++|+|++..|++|+.||.|+
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR  179 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence            99999999999999999999999999999999988888887776543  3445678999999999999999999999999


Q ss_pred             EEECCCCceEEEec--------cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCC
Q 011457          285 VWDIRTKMQIFALA--------GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED  356 (485)
Q Consensus       285 iwd~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~  356 (485)
                      +||..++..++...        +...-|.++.+-.+ ..+++|..-|+|.+||...+..+..+..|...|.+++..+++.
T Consensus       180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d  258 (691)
T KOG2048|consen  180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED  258 (691)
T ss_pred             EEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence            99999988776321        13345778887754 4899999999999999999999999999999999999999988


Q ss_pred             EEEEEcCCC-EEEEECC
Q 011457          357 CFASASAEN-IKKFNLP  372 (485)
Q Consensus       357 ~l~~~~~~~-i~i~d~~  372 (485)
                      .+++++.+. +..|...
T Consensus       259 ~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  259 RVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             eEEEccCCCceEEEEec
Confidence            888887776 5555443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-24  Score=214.94  Aligned_cols=328  Identities=17%  Similarity=0.306  Sum_probs=255.9

Q ss_pred             cccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccC--CCEEEEEeCCCeEEEEECCCCceEEEEccccc
Q 011457          142 NLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHS--NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE  218 (485)
Q Consensus       142 ~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  218 (485)
                      ..+.+.-.++.+.+|....-..+ +-....++.-.+.|+++. +|.  =+.++.|+.+|.++||++.+++.+.++.++..
T Consensus       125 e~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s  203 (910)
T KOG1539|consen  125 EHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFS  203 (910)
T ss_pred             ceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEeccccc
Confidence            34455667788888876652122 222233333333487774 553  35689999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEe
Q 011457          219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~  297 (485)
                      .|+++.-+|-=..++.|..+|+|.++++..++.+.+|+...+.|+.++|..||+ .+++|+..|.+.+||++..+.+..+
T Consensus       204 ~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~  283 (910)
T KOG1539|consen  204 RITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT  283 (910)
T ss_pred             ceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence            999999999889999999999999999999999999984459999999999988 6677777899999999988877766


Q ss_pred             c-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC------------C-------------------------------
Q 011457          298 A-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY------------G-------------------------------  333 (485)
Q Consensus       298 ~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~------------~-------------------------------  333 (485)
                      . .|.+.|....|.+..+.+++.+.|..+++|=..+            |                               
T Consensus       284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs  363 (910)
T KOG1539|consen  284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS  363 (910)
T ss_pred             eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence            6 6888888888888888888888888877773221            1                               


Q ss_pred             ----------------------------------------------------------eEEeE------------ec---
Q 011457          334 ----------------------------------------------------------KTMLT------------LT---  340 (485)
Q Consensus       334 ----------------------------------------------------------~~~~~------------~~---  340 (485)
                                                                                ....+            +.   
T Consensus       364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~  443 (910)
T KOG1539|consen  364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR  443 (910)
T ss_pred             hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence                                                                      00000            00   


Q ss_pred             --cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          341 --HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       341 --~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                        .....+++++.++.|++.+.|...+ |-+|++.+|-....+  ...|+..|..++...-+ .+++++.+|.+.+||.+
T Consensus       444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~  523 (910)
T KOG1539|consen  444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK  523 (910)
T ss_pred             ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence              0123578889999999888887777 999999999877776  35788999999998888 89999999999999998


Q ss_pred             CCcccccceeee---------------------------------ccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          415 SGHNFQQAQTIV---------------------------------QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       415 ~~~~~~~~~~~~---------------------------------~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      .......+..-.                                 .....+|...|++++|||||++|++++.|++|++|
T Consensus       524 ~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w  603 (910)
T KOG1539|consen  524 KKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW  603 (910)
T ss_pred             CcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence            776433221100                                 00123588999999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 011457          462 REDETATPE  470 (485)
Q Consensus       462 ~~~~~~~~~  470 (485)
                      |+.++....
T Consensus       604 Dlpt~~lID  612 (910)
T KOG1539|consen  604 DLPTGTLID  612 (910)
T ss_pred             eccCcceee
Confidence            999987543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.9e-25  Score=197.14  Aligned_cols=251  Identities=21%  Similarity=0.293  Sum_probs=195.9

Q ss_pred             cccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeE-EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457          216 HIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQ-NKVI-RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       216 h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      ..+.|.+|+|+| ...+++.++.||+||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++ 
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-  104 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-  104 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence            567899999999 455666899999999999987 3333 334579999999999999999999999999999999999 


Q ss_pred             eEEEeccCCccEEEEEEcCCCC--EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC-CCEEEE
Q 011457          293 QIFALAGHDNTVCSVFTRPTDP--QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA-ENIKKF  369 (485)
Q Consensus       293 ~~~~~~~~~~~v~~l~~~~~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~i~i~  369 (485)
                      ++..+..|..+|.++.|-+...  .|++||.|.+|++||.+...++.++... ..+.++..-  ..+++.+.. .+|.+|
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv~--~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADVL--YPMAVVATAERHIAVY  181 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhcc--CceeEEEecCCcEEEE
Confidence            5667778999999999987665  8999999999999999999998887654 345555442  345555544 459999


Q ss_pred             ECCCCceee-eeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeecc--C-CCCCCccEEEEEEcc
Q 011457          370 NLPKGEFLH-NMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQP--G-SLDSEAGIYALSYDV  444 (485)
Q Consensus       370 d~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~--~-~~~~~~~V~~l~~s~  444 (485)
                      +++++.... .+...-+-.+.|++...++ ..+.|+-+|.+.+..+..+.....+....+.  + ..+.-..|++++|+|
T Consensus       182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP  261 (347)
T KOG0647|consen  182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP  261 (347)
T ss_pred             EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence            997765433 3344556678899988877 6799999999999999887443333322222  1 112245799999999


Q ss_pred             CCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          445 TGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       445 ~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      .-..|+|+|.||++.+||-+......
T Consensus       262 ~hgtlvTaGsDGtf~FWDkdar~kLk  287 (347)
T KOG0647|consen  262 VHGTLVTAGSDGTFSFWDKDARTKLK  287 (347)
T ss_pred             ccceEEEecCCceEEEecchhhhhhh
Confidence            99999999999999999987655433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.9e-26  Score=211.21  Aligned_cols=279  Identities=19%  Similarity=0.296  Sum_probs=221.4

Q ss_pred             EEeCC-CeEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457          192 TGSAD-RTIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH  268 (485)
Q Consensus       192 tgs~d-g~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  268 (485)
                      +++.| .++.+||+.+|....++++. ...-.++..- ++.|++++. .-..|.+|.+........+.--.++|.|++-+
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS   90 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence            33444 45999999999999998875 2222222221 235666664 44589999987665555444467889999999


Q ss_pred             cCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC---------CCeEEeEe
Q 011457          269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR---------YGKTMLTL  339 (485)
Q Consensus       269 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~---------~~~~~~~~  339 (485)
                      |+|.+|+.|+..|.|++|.+.+|..+..+..|...|+++.|+.|+.+|++|+.||.|.+|++.         +-++...+
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f  170 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF  170 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence            999999999999999999999999999999999999999999999999999999999999763         34677889


Q ss_pred             ccCCCceEEEEECCC--CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          340 THHKKSVRAMALHPT--EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~--~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      ..|.-+|+++...+.  ...+++++.|. +++||+..|..+..+.  ....+.+++.+|.+ .+++|+.+|.|.+.++..
T Consensus       171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~  248 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK  248 (476)
T ss_pred             ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence            999999999988765  45888888887 9999999999888763  45679999999998 999999999999998865


Q ss_pred             Cccccc--------ceeeeccCCCCCCc--cEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          416 GHNFQQ--------AQTIVQPGSLDSEA--GIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       416 ~~~~~~--------~~~~~~~~~~~~~~--~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                      ......        ..........+|..  .|+|++++-||..|++|+.||.|+|||+.......+..
T Consensus       249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            431111        11112223345666  89999999999999999999999999998776554443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=3.4e-25  Score=194.81  Aligned_cols=283  Identities=23%  Similarity=0.331  Sum_probs=222.3

Q ss_pred             ecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCce----------EE-----EEcccccCEEEEEEcCC-CCEEEE
Q 011457          172 SGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTL----------KL-----TLTGHIEQVRGLAVSSK-HTYMFS  234 (485)
Q Consensus       172 ~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~----------~~-----~~~~h~~~V~~l~~s~~-~~~l~s  234 (485)
                      +.|.+.|+++.+.+ .|+|+++|+.||.|.+||+++...          +.     .-.+|.-.|.++.|-|- .-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46999999999998 789999999999999999975431          11     12468889999999984 456778


Q ss_pred             EeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC
Q 011457          235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP  311 (485)
Q Consensus       235 ~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  311 (485)
                      ++.|.++++||..+.+....|+ ..+.|++-+++|-   .-++++|..|-.|++.|+.+|...+.+.+|.+.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            8899999999999999888887 6788999999884   34788888999999999999999999999999999999999


Q ss_pred             CCCE-EEEEeCCCCEEEEECCCC-eEEeEe--------------ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC
Q 011457          312 TDPQ-VVTGSHDSTIKFWDLRYG-KTMLTL--------------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG  374 (485)
Q Consensus       312 ~~~~-l~s~s~dg~I~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~  374 (485)
                      ...+ |++|+.||.|++||++.. .+...+              ..|.+.|..++|..++.++++++.+. +++|+..+|
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence            8776 578999999999999854 232222              34567899999999999999888776 999999888


Q ss_pred             ceeeeeccC--Cc---ccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEE
Q 011457          375 EFLHNMLSQ--QK---TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRL  449 (485)
Q Consensus       375 ~~~~~~~~~--~~---~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L  449 (485)
                      +....-...  ++   ..-..+..-..+.++---.++.+.++++-+|..+..+..        |...|.+..|-++=+.+
T Consensus       279 ~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--------h~k~i~c~~~~~~fq~~  350 (397)
T KOG4283|consen  279 RNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--------HLKRINCAAYRPDFEQC  350 (397)
T ss_pred             cccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec--------ccceeeEEeecCchhhh
Confidence            643221110  00   111112211222444445568899999888887776653        56679999999998999


Q ss_pred             EEEECCCcEEEecC
Q 011457          450 VTCEADKTIKMWRE  463 (485)
Q Consensus       450 ~s~~~Dg~I~iW~~  463 (485)
                      .+|..|+.|..|-.
T Consensus       351 ~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  351 FTGDMNGNIYMWSP  364 (397)
T ss_pred             hccccCCccccccc
Confidence            99999999999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.4e-25  Score=204.95  Aligned_cols=283  Identities=13%  Similarity=0.220  Sum_probs=234.5

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCC--CceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCee
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--GTLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      .+.|++|.|+|....|++++.||+++||.+..  ...+..+.-...+|.+..|.|+|. .+++++.-..++.||+++.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            47899999999999999999999999998753  345666666778999999999998 899999999999999998875


Q ss_pred             EE--EecccC-CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457          252 IR--SYHGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW  328 (485)
Q Consensus       252 ~~--~~~~h~-~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iw  328 (485)
                      .+  ...++. ..+..+.+++++++|+..|..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            43  233343 356778899999999999999999999999999999887 67899999999999999999999999999


Q ss_pred             ECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEEcCCC-EEEEECCCC------ceeeeeccCCcccEEEEEeCCCC-eE
Q 011457          329 DLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASASAEN-IKKFNLPKG------EFLHNMLSQQKTIINSMAVNEEG-VL  399 (485)
Q Consensus       329 d~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~-~l  399 (485)
                      |++...++..+....+ .-++++.++++.+|++|++.+ +-|||..+.      +++.. ...-...|+.+.|+++. +|
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~-~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT-VDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh-hhhhheeeeeeeeCcchhhh
Confidence            9999999888865433 346788889999999999999 888986542      23333 23445679999999999 55


Q ss_pred             EEEe--CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          400 ATGG--DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       400 ~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      +.++  .+..+++-.+.+...+..+...     ...-+.|+|++|+|.|.+|+.|..+|.|.+|++.
T Consensus       451 AiaS~~~knalrLVHvPS~TVFsNfP~~-----n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  451 AIASRVKKNALRLVHVPSCTVFSNFPTS-----NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhccccceEEEeccceeeeccCCCC-----CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            5544  4678999999887777666543     2334569999999999999999999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=8.7e-24  Score=202.53  Aligned_cols=283  Identities=14%  Similarity=0.106  Sum_probs=212.6

Q ss_pred             ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEcccccCEE
Q 011457          143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVR  221 (485)
Q Consensus       143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~  221 (485)
                      ++++.+.+..+.+|+...    .+.+..+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +.
T Consensus         3 ~~~s~~~d~~v~~~d~~t----~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~   76 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTAT----LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PE   76 (300)
T ss_pred             EEEEecCCCEEEEEECCC----CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-cc
Confidence            456667777888887543    356667766544 6789999999876 5677889999999999988777765543 56


Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-cEEEEECCCCceEEEecc
Q 011457          222 GLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-VCRVWDIRTKMQIFALAG  299 (485)
Q Consensus       222 ~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~  299 (485)
                      .++|+|+++.++++ +.|+.|++||+.+++.+..+.. ...+.+++|+|++++++++..++ .+.+||.++++....+. 
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence            78999999977655 5689999999999888877763 34568899999999999988875 46788998887765543 


Q ss_pred             CCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCCCeEEeEeccCC-------CceEEEEECCCCCEEEEE--cCCCEEEE
Q 011457          300 HDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRYGKTMLTLTHHK-------KSVRAMALHPTEDCFASA--SAENIKKF  369 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~-------~~v~~l~~~p~~~~l~~~--~~~~i~i~  369 (485)
                      ......++.|++++.+|+++ ..++.|++||+.+++.+..+..+.       .....++|+|++.+++.+  +.+.+.+|
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~  234 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV  234 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence            23456789999999988655 468999999999988776654321       123468899999975543  33459999


Q ss_pred             ECCCCceeeeeccCCcccEEEEEeCCCC-eEEEE-eCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457          370 NLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATG-GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                      |..+++....+.  ....+.++.|+|++ +|+++ +.+|.|.+||+.+++.+..++.         ....+.++++|
T Consensus       235 d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~~~  300 (300)
T TIGR03866       235 DAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---------GRLPWGVVVRP  300 (300)
T ss_pred             ECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---------ccccceeEeCC
Confidence            999888776543  23468899999999 67665 5689999999999887776652         23346666653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=5.4e-26  Score=212.69  Aligned_cols=281  Identities=20%  Similarity=0.340  Sum_probs=230.9

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCC--CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW--HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~--~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      .|...|-+...|......-|++ .+.+++|.....  ..|...+-.+ .-...|+++.+.|||+.|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeec
Confidence            3555555555555555555554 567789975442  2232222222 24578999999999999999999999999999


Q ss_pred             CCCce--EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          205 AKGTL--KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       205 ~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      ..-..  ...+....-...+++.+||.+..++|+.||.|.|||+.+...++.|++|.+.+.||.++++|..|.+|+-|++
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            76544  3344444456788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      |+.||+++++.+.... ..+.|.++-++|++.+|++|-.++.+.+.... +.....+..|...|.++.|.+.|++|++.+
T Consensus       575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC
Confidence            9999999998776654 56789999999999999999999999988865 455567777899999999999999999999


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      .|+ +-.|..+-|..+.+.  .....|.++.++.|+ ++++|+.|....+|.+
T Consensus       653 kDnlLnawrtPyGasiFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             chhhhhhccCccccceeec--cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            998 899999999877653  566778888888888 9999999998888864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3e-27  Score=230.00  Aligned_cols=236  Identities=24%  Similarity=0.423  Sum_probs=212.6

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG  207 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~  207 (485)
                      |+..+-.+..-..+..+.+++.+..+.+|...+   |+ .+..|.+|..+|.||.|++...+|++|+.+|+|++||++..
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---p~-~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---PN-AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccC---Cc-hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            333333333334556778888888888997654   22 23348899999999999999999999999999999999999


Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd  287 (485)
                      +.+.++.+|...+.++.|+|-+.|+++|+.|+.+++||++...+...+.+|...|.++.|+|+|.++++|+.|.+++|||
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d  182 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD  182 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEE
Q 011457          288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIK  367 (485)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~  367 (485)
                      +..|+....|..|++.+.++.|+|..-+++.|+.|+++++||+++.+.+.........|.+..|+|++..+.+|....+.
T Consensus       183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence            99999999999999999999999999999999999999999999999888888888899999999999999998777654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.5e-26  Score=221.98  Aligned_cols=286  Identities=16%  Similarity=0.293  Sum_probs=229.4

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc----eEEEEccc---ccCEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT----LKLTLTGH---IEQVRGLAVSS-KHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h---~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~  246 (485)
                      .....+|+..++-..++.++. ..++||.+....    +...+...   ...+..+.|.. +.++||+++..|.|.+||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            345667778888888888875 468888775432    22222211   13455677874 4589999999999999999


Q ss_pred             CC---CeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEEEeC
Q 011457          247 EQ---NKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVTGSH  321 (485)
Q Consensus       247 ~~---~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~  321 (485)
                      ..   ++.+..|..|...+.+++||+. .++|++|+.||+|++||++..+...++.+....|..+.|+| .+..|+++..
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d  197 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD  197 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence            87   6777788999999999999996 56999999999999999999999999999999999999999 4678999999


Q ss_pred             CCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--
Q 011457          322 DSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--  397 (485)
Q Consensus       322 dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--  397 (485)
                      .|.+++||+|.. ++...+..|.++|.++.|+|++.+||+|+.|+ +++|+..+++...........++.++.|-|+.  
T Consensus       198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence            999999999975 45678899999999999999999999999998 99999987765555555667889999999998  


Q ss_pred             eEEEEe--CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEECCCcEEEecCCCCCC
Q 011457          398 VLATGG--DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       398 ~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      .|++++  .|-.|+|||++........       ...|...++.++|.. |-..|.+++.||+|..-.+++...
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t-------~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYAT-------FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             hhhhhhccccceEEEEeecccccccee-------eeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence            677665  4789999999864432221       235788899999976 456788999999988777766543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.8e-23  Score=196.06  Aligned_cols=325  Identities=18%  Similarity=0.278  Sum_probs=254.5

Q ss_pred             cCCCCCcceeecccCCCCcccccccc--------cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEE
Q 011457          124 GASGKSSAIVSTSASSERNLSTSAIM--------ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTG  193 (485)
Q Consensus       124 ~~~~~~~~i~~~~~~~~~~~~~t~~~--------~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tg  193 (485)
                      ...||...|.+...+|+.-+.+++-.        ..-+++|+.    .....+.++......|.|++|++  .|.+|+..
T Consensus        99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWds----v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v  174 (626)
T KOG2106|consen   99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDS----VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV  174 (626)
T ss_pred             cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccc----ccceeeeeeccccccceeeeecccCCCceEEEe
Confidence            34678999999999998877775432        223456754    34667778888888999999998  45566554


Q ss_pred             e--CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cc-cCCceEEEEE
Q 011457          194 S--ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---HG-HLSGVYCLGL  267 (485)
Q Consensus       194 s--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~-h~~~v~~l~~  267 (485)
                      .  .+..+.|||.+.+.........++.|....|+|.+..|+.....|.+..|+++.+...+..   .. ....|.|++|
T Consensus       175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F  254 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF  254 (626)
T ss_pred             cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence            3  4567899999998888888878889999999997766665556689999999988765543   22 2367999999


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-----------E
Q 011457          268 HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-----------M  336 (485)
Q Consensus       268 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-----------~  336 (485)
                      .++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-.-.+.           +
T Consensus       255 ~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~i  332 (626)
T KOG2106|consen  255 LENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPI  332 (626)
T ss_pred             cCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCe
Confidence            99987 68999999999999988888777779999999999998885 55599999999998321100           0


Q ss_pred             -----------------------------eEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457          337 -----------------------------LTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT  386 (485)
Q Consensus       337 -----------------------------~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~  386 (485)
                                                   ....+|......++.+|+...+++++.++ +.+|+  ..+.....  ....
T Consensus       333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--~~~d  408 (626)
T KOG2106|consen  333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--IIED  408 (626)
T ss_pred             eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE--EecC
Confidence                                         01234566778899999999999999988 99999  44444332  3456


Q ss_pred             cEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          387 IINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       387 ~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      ...|+.|+|.|.++.|...|...+.|.++...+.. ..       + +.+++++.|+|+|.+||.|+.|+.|+||.++.+
T Consensus       409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~-~~-------d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTI-HT-------D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             ceeEeeccCcceEEEeeccceEEEEecccceeEEE-Ee-------c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            78899999999999999999999999988544332 21       2 678999999999999999999999999999876


Q ss_pred             C
Q 011457          467 A  467 (485)
Q Consensus       467 ~  467 (485)
                      .
T Consensus       480 g  480 (626)
T KOG2106|consen  480 G  480 (626)
T ss_pred             C
Confidence            5

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=5.2e-23  Score=193.08  Aligned_cols=313  Identities=16%  Similarity=0.280  Sum_probs=235.0

Q ss_pred             ceeecccCC--CCccc--ccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECC
Q 011457          131 AIVSTSASS--ERNLS--TSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVA  205 (485)
Q Consensus       131 ~i~~~~~~~--~~~~~--~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~  205 (485)
                      .|.+.+|++  .+.++  ...+.+....+|+=+..    ......+.-+..|....|+|.+. +++++ ..+.+..|+++
T Consensus       156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~----~~~~~vk~sne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~  230 (626)
T KOG2106|consen  156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK----AKLGPVKTSNEVVFLATFHPTDPNLIITC-GKGHLYFWTLR  230 (626)
T ss_pred             cceeeeecccCCCceEEEecCCCccccchhhchhh----hccCcceeccceEEEEEeccCCCcEEEEe-CCceEEEEEcc
Confidence            344555554  23333  23345666667743221    12222334567889999999555 55555 45899999999


Q ss_pred             CCceEEE---Eccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457          206 KGTLKLT---LTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS  281 (485)
Q Consensus       206 ~~~~~~~---~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg  281 (485)
                      .+.+..+   +..+ ...|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+ ++|+.|.
T Consensus       231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDR  308 (626)
T KOG2106|consen  231 GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDR  308 (626)
T ss_pred             CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccc
Confidence            8876554   3332 36799999999987 789999999999999998888888899999999999999865 5599999


Q ss_pred             cEEEEECCCCc----------------------------------------eEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          282 VCRVWDIRTKM----------------------------------------QIFALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       282 ~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      .|..||-.-.+                                        ......+|......++.+|+.+++++++.
T Consensus       309 ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq  388 (626)
T KOG2106|consen  309 KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ  388 (626)
T ss_pred             eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC
Confidence            99999832100                                        01123467788899999999999999999


Q ss_pred             CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457          322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL  399 (485)
Q Consensus       322 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  399 (485)
                      |+.+++|+  ..+.+.+.. -..+..++.|+|.| .++.+...+ ..+.|.++...+..- .. +..++++.++|+| +|
T Consensus       389 dk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  389 DKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFL  462 (626)
T ss_pred             cceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEE
Confidence            99999999  444444332 35788999999999 888887776 888999885555443 33 8899999999999 99


Q ss_pred             EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      +.|+.|+.|++|.+..+.........      -+...|+.+.|++|+++|.+-+.|-.|..|+
T Consensus       463 Avgs~d~~iyiy~Vs~~g~~y~r~~k------~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  463 AVGSHDNHIYIYRVSANGRKYSRVGK------CSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEecCCCeEEEEEECCCCcEEEEeee------ecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            99999999999998754432222111      2337899999999999999999999999993

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.4e-26  Score=225.38  Aligned_cols=236  Identities=25%  Similarity=0.482  Sum_probs=218.2

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~  248 (485)
                      +.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|.++.|++...+|++|+.+|+|++||++.
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            44568999999999877889999999999999999988888888999999999999999999999999999999999999


Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW  328 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iw  328 (485)
                      .+.++++.+|...+..+.|+|-+.+.+.|+.|+.+++||++...+.+.+.+|...+..+.|+|+|.+++.|+.|.+++||
T Consensus       102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~  181 (825)
T KOG0267|consen  102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW  181 (825)
T ss_pred             hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457          329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN  405 (485)
Q Consensus       329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d  405 (485)
                      |+..|+....|..|...+.++.|+|...+++.|+.+. +.+||+++.+.+... ......|.+..|++++ .+++|...
T Consensus       182 d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  182 DLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             cccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc-CCccCCceeeeecCCceeeecCchh
Confidence            9999999999999999999999999999999999998 999999988877764 3446789999999999 55555443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.5e-24  Score=190.99  Aligned_cols=292  Identities=12%  Similarity=0.225  Sum_probs=223.1

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      |-++..+|.. .. -.|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++|+++|+.|++++.|..|.+
T Consensus        14 PEel~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l   91 (405)
T KOG1273|consen   14 PEELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL   91 (405)
T ss_pred             hHhhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence            3445555542 22 789999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             EECCCCeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccC----CccEEEEEEcCCCCEEEE
Q 011457          244 WDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGH----DNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       244 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s  318 (485)
                      ||+..|.+++.+. ..++|+...|+|... ..++.-.+..-.+-++...+...--...    ...-.+..|.+.|+++++
T Consensus        92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit  170 (405)
T KOG1273|consen   92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT  170 (405)
T ss_pred             EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence            9999999999987 789999999999643 3333334444555555543221111111    112233468899999999


Q ss_pred             EeCCCCEEEEECCCCeEEeEeccCC-CceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee---------eeecc-CCcc
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLTHHK-KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL---------HNMLS-QQKT  386 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~---------~~~~~-~~~~  386 (485)
                      |...|.+.++|..+.+++..++... ..|..+.++-.|+.|+.-+.|. |+.|++..-...         +++.. ....
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            9999999999999999999887766 7899999999999999988887 999987631111         11110 1123


Q ss_pred             cEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          387 IINSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       387 ~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .-++++|+.+| ++++|+ ....++||.-..|..+..+..       ........+.|+|-...+++- ..|.|+||...
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG-------~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG-------TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC-------Cchhheeecccccceeeeeec-cCCceEEEEee
Confidence            45678899999 665554 346799999999988776542       122457789999998888877 78999999875


Q ss_pred             CC
Q 011457          465 ET  466 (485)
Q Consensus       465 ~~  466 (485)
                      ..
T Consensus       323 ~~  324 (405)
T KOG1273|consen  323 QV  324 (405)
T ss_pred             cc
Confidence            43

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=2.5e-24  Score=209.13  Aligned_cols=288  Identities=19%  Similarity=0.258  Sum_probs=231.5

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCceE---EEEcccccCEEEEEEcCC-----------CCEEEEEeCCCcEEE
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK---LTLTGHIEQVRGLAVSSK-----------HTYMFSAGDDKQVKC  243 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s~~-----------~~~l~s~~~dg~V~i  243 (485)
                      ..++.|++...+|...-.|..++|||+.+-..+   ..+-.|...|..+.--|.           ...+.+|+.|++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            446779999999999999999999999765433   334458888887766551           124899999999999


Q ss_pred             EECCCCe---eEEE----------------------------------ecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457          244 WDLEQNK---VIRS----------------------------------YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW  286 (485)
Q Consensus       244 wd~~~~~---~~~~----------------------------------~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw  286 (485)
                      ||++.+.   ..+.                                  .-+....+.+++.+|+|++|++|..-|.++||
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            9997521   1100                                  01134568999999999999999999999999


Q ss_pred             ECCCCceEEEeccCCccEEEEEEcCC---CCEEEEEeCCCCEEEEECCC-CeEEeEeccCCCceEEEEECCCC--CEEEE
Q 011457          287 DIRTKMQIFALAGHDNTVCSVFTRPT---DPQVVTGSHDSTIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTE--DCFAS  360 (485)
Q Consensus       287 d~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~--~~l~~  360 (485)
                      |+..-+....+..|+..|.|+.|+..   .++|++++.|.-|.+||... ...+.++.+|...|+++.|--.|  ..+++
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis  566 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS  566 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence            99998888889999999999999852   46899999999999999865 45677899999999999998877  78888


Q ss_pred             EcCCCEEEEECCC----Ccee-eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457          361 ASAENIKKFNLPK----GEFL-HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE  434 (485)
Q Consensus       361 ~~~~~i~i~d~~~----~~~~-~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  434 (485)
                      ++.|....|+...    |... ..........+..|.+.|.. ++++++.|..|+|||+.+|+....++.     +.+|+
T Consensus       567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-----s~~~e  641 (1080)
T KOG1408|consen  567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-----SRDHE  641 (1080)
T ss_pred             ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc-----cccCC
Confidence            9888866666644    2211 11111224568889999988 999999999999999999998887764     45788


Q ss_pred             ccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          435 AGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       435 ~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      +....+..+|.|.||++.+.|+++.++|+..++...
T Consensus       642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             CceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence            889999999999999999999999999999887554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.6e-26  Score=221.23  Aligned_cols=242  Identities=18%  Similarity=0.310  Sum_probs=205.1

Q ss_pred             ceEEEEEcc-CCCEEEEEeCCCeEEEEECCC---CceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee
Q 011457          177 WVRSVAFDH-SNTWFCTGSADRTIKIWDVAK---GTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       177 ~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      .+..|.|+. +.++|||++..|.|.+||+..   .+++..|..|...++++.|++.. .+|++|+.||+|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            355677764 578999999999999999987   66777889999999999999865 6788999999999999999999


Q ss_pred             EEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          252 IRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       252 ~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                      ..++.+....|..+.|+|. ++.++++...|.+++||++.. ++...+..|.++|.++.|+|++.+|++|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            9999999999999999994 779999999999999999864 45677889999999999999999999999999999999


Q ss_pred             CCCCeEEeEec-cCCCceEEEEECCCCC-EEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEE
Q 011457          330 LRYGKTMLTLT-HHKKSVRAMALHPTED-CFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATG  402 (485)
Q Consensus       330 ~~~~~~~~~~~-~~~~~v~~l~~~p~~~-~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg  402 (485)
                      ..+.+.-.... ....+|..+.|-|... .|++++...   |++||++..-.....+..|...++.++|....  .+.++
T Consensus       249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~  328 (839)
T KOG0269|consen  249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC  328 (839)
T ss_pred             ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence            98655433222 2356899999999876 455555432   99999999888888888999999999998744  89999


Q ss_pred             eCCCcEEEEeCCCCcc
Q 011457          403 GDNGSLWFWDWKSGHN  418 (485)
Q Consensus       403 ~~dg~I~iwd~~~~~~  418 (485)
                      +.||.|..-.++++..
T Consensus       329 sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  329 SKDGTVLQHLFKNATT  344 (839)
T ss_pred             cCccHHHHhhhhcccC
Confidence            9999988776665543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=9.6e-24  Score=187.19  Aligned_cols=248  Identities=16%  Similarity=0.218  Sum_probs=195.8

Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457          216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF  295 (485)
Q Consensus       216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  295 (485)
                      ....|.++.|+|.++.|++++.||.+++||+........++ |..++.+++|.++ ..+++|+.||.|+.+|+.++... 
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-
Confidence            35789999999999999999999999999999887777776 9999999999985 57999999999999999988654 


Q ss_pred             EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCC
Q 011457          296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKG  374 (485)
Q Consensus       296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~  374 (485)
                      .+..|...|.++.+.+....+++|+.|++|++||.+.......+... ..|.++...  +..|++|+.+ .+.+||+++.
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence            44569999999999998899999999999999999975555555443 378877765  5566665544 5999999987


Q ss_pred             ceeeee-ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeee--cc---CCCCCCccEEEEEEccCCC
Q 011457          375 EFLHNM-LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIV--QP---GSLDSEAGIYALSYDVTGS  447 (485)
Q Consensus       375 ~~~~~~-~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~--~~---~~~~~~~~V~~l~~s~~g~  447 (485)
                      ....+. ...-+..+.|+++.|++ -+++++-||.|.+=.++..+..+..+...  +.   ....--.+|++++|+|-..
T Consensus       166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            655432 34456789999999977 78889999999987666553322221111  11   1112234799999999999


Q ss_pred             EEEEEECCCcEEEecCCCCCCC
Q 011457          448 RLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       448 ~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      .|+|||.||.|.+||..+.+..
T Consensus       246 tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  246 TFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             eEEecCCCceEEEccCcchhhh
Confidence            9999999999999999876643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.6e-23  Score=185.54  Aligned_cols=249  Identities=15%  Similarity=0.289  Sum_probs=195.2

Q ss_pred             cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEecccCCceEEEEEec--CCCEEEEEECCCcEEEEE
Q 011457          214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       214 ~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd  287 (485)
                      .+|..-|.++.|.+.|+.+++|+.|++|+|||.+..    .+....+.|.+.|..+.|-+  -|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            468889999999999999999999999999997543    56777889999999999966  389999999999999997


Q ss_pred             CC---------CCceEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCeE------EeEec-------cCC
Q 011457          288 IR---------TKMQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKT------MLTLT-------HHK  343 (485)
Q Consensus       288 ~~---------~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~~------~~~~~-------~~~  343 (485)
                      -.         ......++....+.|+.+.|.|.  |-.|++++.||.+|||+.-....      ...+.       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            62         12234556667889999999985  66899999999999998654322      22222       355


Q ss_pred             CceEEEEECCC---CCEEEEEcCC------CEEEEECCCCc----eeeeeccCCcccEEEEEeCCCC-----eEEEEeCC
Q 011457          344 KSVRAMALHPT---EDCFASASAE------NIKKFNLPKGE----FLHNMLSQQKTIINSMAVNEEG-----VLATGGDN  405 (485)
Q Consensus       344 ~~v~~l~~~p~---~~~l~~~~~~------~i~i~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~-----~l~sg~~d  405 (485)
                      .+..|+.|+|.   ..+|+.++++      .++||....+.    .+.+ +..+..+|..++|.|+-     +|++++.|
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~-L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE-LPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh-cCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            67889999985   4689999888      58888765543    2222 45888999999999974     79999999


Q ss_pred             CcEEEEeCCCC------------cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          406 GSLWFWDWKSG------------HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       406 g~I~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      | |+||+++..            .....++.......-+|.+.|..+.|+-.|..|++.|.||+|++|+..
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            9 999998742            112222222222345789999999999999999999999999999865

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.4e-24  Score=189.17  Aligned_cols=287  Identities=18%  Similarity=0.289  Sum_probs=226.4

Q ss_pred             ccCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccCCCEEEEE-eCCCeEE
Q 011457          123 VGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHSNTWFCTG-SADRTIK  200 (485)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tg-s~dg~I~  200 (485)
                      ....+|+..|....|+++|..++|+..|+.+++|...++... -+++|. .---+--+.+.|+||.+-++.. -...+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            345689999999999999999999999999999998775321 122221 1122356788999988765544 4556899


Q ss_pred             EEECCCC---ceEEE---------EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457          201 IWDVAKG---TLKLT---------LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH  268 (485)
Q Consensus       201 iwd~~~~---~~~~~---------~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  268 (485)
                      +|.+...   .....         -..|.-.|..+-...++.+|++++.|..|.+|++. |+.+.++......-+..+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            9987432   21111         12356677778888889999999999999999998 99999998777778889999


Q ss_pred             cCCCEEEEEECCCcEEEEECC---C-----CceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-------
Q 011457          269 PTIDILLTGGRDSVCRVWDIR---T-----KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-------  333 (485)
Q Consensus       269 ~~~~~l~sg~~dg~i~iwd~~---~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-------  333 (485)
                      |+|+++++++..-.|++|.+-   .     -..+..+++|...|..++|+++...+++.+.||++++||+.-.       
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence            999999999999999999873   2     2346788999999999999999999999999999999997531       


Q ss_pred             eEEeEe----ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcE
Q 011457          334 KTMLTL----THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSL  408 (485)
Q Consensus       334 ~~~~~~----~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I  408 (485)
                      +.+.+.    ......-..+.++|+|..|+.+....+.+|..++|+....+...|...|.+++|+++| ++++++ |..+
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v  396 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYV  396 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence            112221    1122334489999999999999999999999999999988888999999999999999 555554 6688


Q ss_pred             EEEe
Q 011457          409 WFWD  412 (485)
Q Consensus       409 ~iwd  412 (485)
                      +++.
T Consensus       397 rv~~  400 (420)
T KOG2096|consen  397 RVIR  400 (420)
T ss_pred             eeec
Confidence            8875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=4.3e-24  Score=198.52  Aligned_cols=253  Identities=18%  Similarity=0.278  Sum_probs=202.8

Q ss_pred             ccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCee----------EEEecccCCceEEEEEecCCC-EEEEEECCCc
Q 011457          215 GHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKV----------IRSYHGHLSGVYCLGLHPTID-ILLTGGRDSV  282 (485)
Q Consensus       215 ~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~  282 (485)
                      .|.+.|+.+.+.|... .+++.+..+.|.|||.....-          -..+.+|...-+.++|++... .|++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            4889999999999765 566678889999999864321          126778988888999999644 8999999999


Q ss_pred             EEEEECCCCc-------eEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECC--CCeEEeEeccCCCceEEEEEC
Q 011457          283 CRVWDIRTKM-------QIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLR--YGKTMLTLTHHKKSVRAMALH  352 (485)
Q Consensus       283 i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~l~~~  352 (485)
                      |++||+....       ....+.+|...|..++|++. ...|++++.|+.+.|||+|  +.++......|...|.+++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            9999997532       34567899999999999984 5578899999999999999  566677788899999999999


Q ss_pred             CCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccce--e--
Q 011457          353 PTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQ--T--  424 (485)
Q Consensus       353 p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~--~--  424 (485)
                      |-+ ..||+++.|+ +.+||+++.......+.+|...|.++.|+|..  .|++++.|+.+.+||+..-...+...  .  
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg  361 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG  361 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence            964 5777888777 99999998776555568899999999999988  99999999999999997533322100  0  


Q ss_pred             --eeccCCCCCCccEEEEEEccCCCE-EEEEECCCcEEEecCCCCC
Q 011457          425 --IVQPGSLDSEAGIYALSYDVTGSR-LVTCEADKTIKMWREDETA  467 (485)
Q Consensus       425 --~~~~~~~~~~~~V~~l~~s~~g~~-L~s~~~Dg~I~iW~~~~~~  467 (485)
                        -..-.+-+|...|..+.|+|+..+ +++++.|+.+.||+....-
T Consensus       362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i  407 (422)
T KOG0264|consen  362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI  407 (422)
T ss_pred             CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence              000123478899999999999876 5578899999999988544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-22  Score=197.21  Aligned_cols=288  Identities=18%  Similarity=0.275  Sum_probs=234.5

Q ss_pred             EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-eEEEEccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-LKLTLTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~  248 (485)
                      +.--...|.++||+.+.+.||.+-.||.|.||++..+= +...+.++ ...|.+++|++ +..|++.+.+|.|.-||+.+
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence            33456789999999999999999999999999998763 33445554 46899999995 45688999999999999999


Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDSTIK  326 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~  326 (485)
                      ++....+....+.|++++.+|.++.++.|+.||.+..++...++..+.  +...++.|.++.|++++..++.|+.||.|+
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR  179 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence            999999999999999999999999999999999888888887766543  334568999999999999999999999999


Q ss_pred             EEECCCCeEEeEec-----c---CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457          327 FWDLRYGKTMLTLT-----H---HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-  397 (485)
Q Consensus       327 iwd~~~~~~~~~~~-----~---~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-  397 (485)
                      +||...+..+...+     .   ...-|.++.|-.++..+..-+.+.|.+||...+..++.+ ..|...|.+++..+++ 
T Consensus       180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d  258 (691)
T KOG2048|consen  180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNED  258 (691)
T ss_pred             EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCC
Confidence            99999988776221     1   223578888886665555555556999999999988875 5678889999999997 


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      ++++++.|+.|..|...++..-  +.  .......|...|.+++..++  .|++||.|+++.+=.....
T Consensus       259 ~vfsaGvd~~ii~~~~~~~~~~--wv--~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~  321 (691)
T KOG2048|consen  259 RVFSAGVDPKIIQYSLTTNKSE--WV--INSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREF  321 (691)
T ss_pred             eEEEccCCCceEEEEecCCccc--ee--eeccccCCcccceeeeeecc--eEEecceeeEEEEcccccc
Confidence            9999999999999988776541  11  11112357778999998866  8999999999998777653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=7.7e-24  Score=203.81  Aligned_cols=277  Identities=19%  Similarity=0.329  Sum_probs=204.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceE------EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE--ecc
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLK------LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS--YHG  257 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~------~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~--~~~  257 (485)
                      ....|+.+..||.|.++|.......      .....|.+.|..+.|.|....|++++.|.++++||+++++++..  +.+
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            3457899999999999998654332      44567999999999999778899999999999999999998877  889


Q ss_pred             cCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCc---------------------------eEEEeccCCccEEE---
Q 011457          258 HLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKM---------------------------QIFALAGHDNTVCS---  306 (485)
Q Consensus       258 h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~---  306 (485)
                      |...|.+++|+|+. ..|++|++||.|.|||++...                           .+..-..+...|.+   
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT  222 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT  222 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence            99999999999964 589999999999999997422                           01111234444554   


Q ss_pred             EEEcCCCCEEEEEeC-CCCEEEEECCCCeEEeEe--------ccC---CCceEEEEECCCCCEEE-EEcCCCEEEEECCC
Q 011457          307 VFTRPTDPQVVTGSH-DSTIKFWDLRYGKTMLTL--------THH---KKSVRAMALHPTEDCFA-SASAENIKKFNLPK  373 (485)
Q Consensus       307 l~~~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~--------~~~---~~~v~~l~~~p~~~~l~-~~~~~~i~i~d~~~  373 (485)
                      +.+..|+..|++++. |+.|++||++........        ..+   ...+.++.....|.++. +|.++.|+.|++..
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            555568889998888 999999999986554322        122   23577777777776555 55555599999976


Q ss_pred             Cce--eeeeccCCc-ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CE
Q 011457          374 GEF--LHNMLSQQK-TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SR  448 (485)
Q Consensus       374 ~~~--~~~~~~~~~-~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~  448 (485)
                      -..  +..+..... .....-..++++ ++++|+.|+..++|.+.+.+....+.       .+|...|++++|.|.. .-
T Consensus       303 ~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~  375 (720)
T KOG0321|consen  303 LSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTP  375 (720)
T ss_pred             cCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------hCcceEEEEEeeccccCCC
Confidence            432  222211111 222334467777 99999999999999998765433322       4688889999998743 34


Q ss_pred             EEEEECCCcEEEecCCCCCCC
Q 011457          449 LVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       449 L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      +++++.|-+++||++.++...
T Consensus       376 v~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  376 VATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             ceeeccCcceEEEeccCchhh
Confidence            777799999999999765543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.2e-24  Score=186.72  Aligned_cols=246  Identities=18%  Similarity=0.244  Sum_probs=202.3

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEEeCCCeEEEEE
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tgs~dg~I~iwd  203 (485)
                      ..|.+.|.....+-.+..++|++.|+.+++.....- .+-+++.+|.||.++|..++|..  .|.+||+++.||.|.||.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n-~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNN-GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCC-CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            357788888888888999999999999999876552 33588999999999999999975  899999999999999999


Q ss_pred             CCCCc--eEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC---eeEEEecccCCceEEEEEecC---C--
Q 011457          204 VAKGT--LKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPT---I--  271 (485)
Q Consensus       204 ~~~~~--~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~---~--  271 (485)
                      -..++  .......|...|++++|.|.  |-.|++++.||.|.|.+.+..   ...+....|.-.|++++|.|.   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            88774  34456779999999999986  468999999999999998754   233445679999999999985   4  


Q ss_pred             ---------CEEEEEECCCcEEEEECCCC--ceEEEeccCCccEEEEEEcCCC----CEEEEEeCCCCEEEEECCCCeE-
Q 011457          272 ---------DILLTGGRDSVCRVWDIRTK--MQIFALAGHDNTVCSVFTRPTD----PQVVTGSHDSTIKFWDLRYGKT-  335 (485)
Q Consensus       272 ---------~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~~----~~l~s~s~dg~I~iwd~~~~~~-  335 (485)
                               +.|++|+.|..|+||+...+  .....+.+|.+.|..++|.|.-    .++++++.||++.||-.+.... 
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                     56999999999999999875  3345588999999999999964    4799999999999997763211 


Q ss_pred             --EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457          336 --MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLP  372 (485)
Q Consensus       336 --~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~  372 (485)
                        ...+......+..+.|+..|+.|+.++.++ +.+|.-.
T Consensus       247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence              222333466899999999999999888777 9999754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=3.6e-23  Score=200.93  Aligned_cols=334  Identities=16%  Similarity=0.236  Sum_probs=268.8

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe---cCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS---GHLGWVRSVAFDHSNTWFCTGSADRTIKI  201 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~---~H~~~V~~l~~sp~~~~l~tgs~dg~I~i  201 (485)
                      ..||.+-|.+...++++..+.++++|+...+|.+.+..--|...-.+.   |..+.-...-|+|+++.+++-+.-|..++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            358999999999999998888999999999998776555566655544   44567899999999999999999999999


Q ss_pred             EECCCC---ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----eEEEecccCCceEEEEEecCCCEE
Q 011457          202 WDVAKG---TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDIL  274 (485)
Q Consensus       202 wd~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l  274 (485)
                      |..++.   .....+.||...|++++|+|.|.||++.+.|.+-|++-.-..+    .+..-+-|...++|++|-+....+
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F  422 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF  422 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence            983322   3445578999999999999999999999999999999654221    233335688889999999866688


Q ss_pred             EEEECCCcEEEEECCC-------------------------------------------Cc-------------------
Q 011457          275 LTGGRDSVCRVWDIRT-------------------------------------------KM-------------------  292 (485)
Q Consensus       275 ~sg~~dg~i~iwd~~~-------------------------------------------~~-------------------  292 (485)
                      ++|.....+|+|+...                                           +.                   
T Consensus       423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e  502 (764)
T KOG1063|consen  423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE  502 (764)
T ss_pred             eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence            8999999999997531                                           00                   


Q ss_pred             --------------eEEEeccCCccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEeEeccCCCceEEEEECC
Q 011457          293 --------------QIFALAGHDNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTMLTLTHHKKSVRAMALHP  353 (485)
Q Consensus       293 --------------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p  353 (485)
                                    .++.+.||...|.+++.+|+++++++++...     .|++|+..+...+..+..|.-.|+.++|+|
T Consensus       503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence                          0123457889999999999999999987654     599999999999999999999999999999


Q ss_pred             CCCEEEEEcCCC-EEEEECCCCcee---eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC--cccccceeee
Q 011457          354 TEDCFASASAEN-IKKFNLPKGEFL---HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG--HNFQQAQTIV  426 (485)
Q Consensus       354 ~~~~l~~~~~~~-i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~  426 (485)
                      |+++|++.+.|. +.+|........   ......|..+|..+.|+|++ ++++++.|.+|.+|.....  +.+..+    
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~----  658 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF----  658 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh----
Confidence            999999999998 899987543322   22256788999999999999 8999999999999998876  333332    


Q ss_pred             ccCCCCCCccEEEEEEccC-----CCEEEEEECCCcEEEecCC
Q 011457          427 QPGSLDSEAGIYALSYDVT-----GSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       427 ~~~~~~~~~~V~~l~~s~~-----g~~L~s~~~Dg~I~iW~~~  464 (485)
                        ....+...|++++|.+-     +..++.|-..|.|.+|+..
T Consensus       659 --a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  659 --ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             --chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence              22456788999998762     3367788899999999976

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.3e-24  Score=197.76  Aligned_cols=263  Identities=15%  Similarity=0.241  Sum_probs=212.8

Q ss_pred             ccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEE
Q 011457          145 TSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA  224 (485)
Q Consensus       145 ~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~  224 (485)
                      ++...++.+..|..-....-- .+-   --.++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.
T Consensus        55 saq~~rp~l~vw~i~k~~~~~-q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~  130 (476)
T KOG0646|consen   55 SAQLKRPLLHVWEILKKDQVV-QYI---VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK  130 (476)
T ss_pred             eecccCccccccccCchhhhh-hhc---ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence            344455667777543321111 111   2368899999999999999998999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECC---------CCeeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCce
Q 011457          225 VSSKHTYMFSAGDDKQVKCWDLE---------QNKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKMQ  293 (485)
Q Consensus       225 ~s~~~~~l~s~~~dg~V~iwd~~---------~~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~  293 (485)
                      |+.|+.+|++||.||.|.+|++.         +-+.++.|..|.-+|+.+...+.  ..+|++++.|.++++||+..+..
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            99999999999999999999873         23578889999999999998875  35899999999999999999988


Q ss_pred             EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC----------------eEEeEeccCCC--ceEEEEECCCC
Q 011457          294 IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG----------------KTMLTLTHHKK--SVRAMALHPTE  355 (485)
Q Consensus       294 ~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~----------------~~~~~~~~~~~--~v~~l~~~p~~  355 (485)
                      +.++. ....+.++..+|.+..+++|+.+|.|.+.++...                ..+..+.+|..  .|+|++++-||
T Consensus       211 Llti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg  289 (476)
T KOG0646|consen  211 LLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG  289 (476)
T ss_pred             eEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence            88876 6788999999999999999999999999887532                23456677877  99999999999


Q ss_pred             CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeC
Q 011457          356 DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDW  413 (485)
Q Consensus       356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~  413 (485)
                      .+|++|+.++ +++||+.+.++++.+ ....++|+.+.+.|-.  .+..-...-.+-+|++
T Consensus       290 tlLlSGd~dg~VcvWdi~S~Q~iRtl-~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  290 TLLLSGDEDGKVCVWDIYSKQCIRTL-QTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             cEEEeeCCCCCEEEEecchHHHHHHH-hhhccccceeEeeccccceecccccCccCCchHh
Confidence            9999999998 999999999988875 3367788888885543  2222333344445544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.2e-23  Score=207.32  Aligned_cols=273  Identities=18%  Similarity=0.225  Sum_probs=227.9

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCC-CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW-HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~-~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~  206 (485)
                      |......+.+.+++..+.+++.|+.+++|..-.. ..|-.    +.-|...|.+++..  +++|++|+.+++|.+|.+.+
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t----i~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET----IDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch----hhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence            5556677889999999999999999999987665 33322    22278888888875  55899999999999999999


Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW  286 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw  286 (485)
                      ++.-..+....-++++++|+-+|++++.|+.|-.|++-++.+....+.+.+|.++|.++.|+|.+++|++.+.||.|++|
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            88776777777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceEEEecc-------C-CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--CCCceEEEEECCCCC
Q 011457          287 DIRTKMQIFALAG-------H-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--HKKSVRAMALHPTED  356 (485)
Q Consensus       287 d~~~~~~~~~~~~-------~-~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~  356 (485)
                      |+.++.....+.+       . ...++.++|+|++..+++.+.|+.|++|+...+.....+..  +...+..+.|+|+|.
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK  245 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence            9999887766653       1 34567789999999999999999999999999988887754  334599999999999


Q ss_pred             EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 011457          357 CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFW  411 (485)
Q Consensus       357 ~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iw  411 (485)
                      |||+++.++ |.+||..+-+.     ......|.+++|.|+. .+-.-...|...+|
T Consensus       246 YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  246 YIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             EEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            999999888 99999987221     3345779999999987 44333444444443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2e-22  Score=178.54  Aligned_cols=246  Identities=19%  Similarity=0.335  Sum_probs=193.5

Q ss_pred             ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 011457          172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd  245 (485)
                      .+|.+-|+|+.|++.|+.+|||+.|++|+|||..+.    .+....+.|.+.|..+.|.+  -|+.+++|+.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            489999999999999999999999999999997543    45566788999999999975  579999999999999997


Q ss_pred             CCC---------CeeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCc------eEEEec-------cCC
Q 011457          246 LEQ---------NKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKM------QIFALA-------GHD  301 (485)
Q Consensus       246 ~~~---------~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~------~~~~~~-------~~~  301 (485)
                      -..         .....++....+.|+.+.|.|.  |-.|++++.||.++||+.-...      ....+.       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            411         1234456667889999999995  6689999999999999875432      222222       356


Q ss_pred             ccEEEEEEcCC---CCEEEEEeCC-----CCEEEEECCCC----eEEeEeccCCCceEEEEECCC----CCEEEEEcCCC
Q 011457          302 NTVCSVFTRPT---DPQVVTGSHD-----STIKFWDLRYG----KTMLTLTHHKKSVRAMALHPT----EDCFASASAEN  365 (485)
Q Consensus       302 ~~v~~l~~~~~---~~~l~s~s~d-----g~I~iwd~~~~----~~~~~~~~~~~~v~~l~~~p~----~~~l~~~~~~~  365 (485)
                      ....|+.|++.   .++|++|+.+     +.++||....+    ..+.++..|..+|++|+|.|+    -.+|++++.|+
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            67889999874   4578888776     47888876543    345577889999999999996    34788999999


Q ss_pred             EEEEECCCCc----------------e---eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457          366 IKKFNLPKGE----------------F---LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       366 i~i~d~~~~~----------------~---~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                      |+||.+....                .   ....+..|++.+..+.|+-.| .|.+.++||.|++|...-..
T Consensus       250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            9999986311                0   111256788999999999999 89999999999999765433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=5.7e-23  Score=190.89  Aligned_cols=294  Identities=20%  Similarity=0.264  Sum_probs=222.2

Q ss_pred             cceEEEEecCCcceEEEEEccCC--CEEEEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcCCC-CEEEEEeC
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSSKH-TYMFSAGD  237 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~  237 (485)
                      .....+.+-|.+.|++++|+|..  +++|+|..-|+|-+||+.+.    .-+..+..|..+|.+|.|+|.. ..+++.+.
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence            34456677899999999999954  58899999999999999522    3456678899999999999955 67999999


Q ss_pred             CCcEEEEECCCCee--EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce-EEEeccCCccEEEEEEcCCCC
Q 011457          238 DKQVKCWDLEQNKV--IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-IFALAGHDNTVCSVFTRPTDP  314 (485)
Q Consensus       238 dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~  314 (485)
                      ||+|++-|++.+..  +..+......++.+.|+.+...++.++.=|...+||++++.. ...+.-|...|++++++|..+
T Consensus       256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            99999999987643  333333556678899998888888888888999999998765 666778999999999999765


Q ss_pred             -EEEEEeCCCCEEEEECCCCe----EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECC----CCceeeeeccCC
Q 011457          315 -QVVTGSHDSTIKFWDLRYGK----TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLP----KGEFLHNMLSQQ  384 (485)
Q Consensus       315 -~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~----~~~~~~~~~~~~  384 (485)
                       +|++++.|++.+|||++...    +......|...|.+..|+|.+-.|++.+.|+ |++||..    .......+...+
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~  415 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN  415 (498)
T ss_pred             hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence             57899999999999998633    2344567889999999999887777777666 9999983    333333332222


Q ss_pred             c----ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEE-EEEccCCCEEEE-EECCCc
Q 011457          385 K----TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA-LSYDVTGSRLVT-CEADKT  457 (485)
Q Consensus       385 ~----~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s~~g~~L~s-~~~Dg~  457 (485)
                      .    -......|.|+. ++++|-.-..|-|+|-..++.+..+...       ....|.+ ..|+|.+..+++ ++..|.
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P-------~~~tI~~vn~~HP~~~~~~aG~~s~Gk  488 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP-------ESSTIPSVNEFHPMRDTLAAGGNSSGK  488 (498)
T ss_pred             cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc-------cccccccceeecccccceeccCCccce
Confidence            1    123345688887 8999999999999998888755554321       1123433 368998885555 456788


Q ss_pred             EEEecCCC
Q 011457          458 IKMWREDE  465 (485)
Q Consensus       458 I~iW~~~~  465 (485)
                      |+||.-+.
T Consensus       489 i~vft~k~  496 (498)
T KOG4328|consen  489 IYVFTNKK  496 (498)
T ss_pred             EEEEecCC
Confidence            99986543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.2e-22  Score=177.19  Aligned_cols=284  Identities=21%  Similarity=0.306  Sum_probs=219.5

Q ss_pred             CCCcceeecccCC-CCcccccccccCCCCCCCCCCCC---CC---c--ceE---EEEecCCcceEEEEEcc-CCCEEEEE
Q 011457          127 GKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWH---AP---W--KCY---RVISGHLGWVRSVAFDH-SNTWFCTG  193 (485)
Q Consensus       127 ~~~~~i~~~~~~~-~~~~~~t~~~~~~~~~w~~~~~~---~~---~--~~~---~~l~~H~~~V~~l~~sp-~~~~l~tg  193 (485)
                      .|.+.|.++...+ ++.++.+++.|..+.+|....-.   ..   .  +++   ..-.+|.-.|..+.|-| |...|.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            3667777776664 67888899999999999755432   11   1  111   11237888999999999 77789999


Q ss_pred             eCCCeEEEEECCCCceEEEEcccccCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC
Q 011457          194 SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS---KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT  270 (485)
Q Consensus       194 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~---~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~  270 (485)
                      +.|.+++|||.++.+....|. ..+.|.+-+++|   .+.++++|..|-.|++.|+.+|.+..++.+|...|.++.|+|.
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            999999999999998888887 568889889988   3568889999999999999999999999999999999999998


Q ss_pred             CC-EEEEEECCCcEEEEECCCC-ceEEE--------------eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457          271 ID-ILLTGGRDSVCRVWDIRTK-MQIFA--------------LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK  334 (485)
Q Consensus       271 ~~-~l~sg~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~  334 (485)
                      .. .|++|+.||.|++||++.- .+...              -..|.+.|..++|..++.++++++.|..+++|+..+|+
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            66 6889999999999999853 22222              23577899999999999999999999999999998876


Q ss_pred             EEeEecc---CCC----ceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC
Q 011457          335 TMLTLTH---HKK----SVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG  406 (485)
Q Consensus       335 ~~~~~~~---~~~----~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg  406 (485)
                      ....-.+   |..    .+. +.--..+.++..-.++++.++++-.+..+..+ ..|...+.|.++.++- ...+|..|+
T Consensus       280 ntl~~~g~~~~n~~~~~~~~-~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h~k~i~c~~~~~~fq~~~tg~~d~  357 (397)
T KOG4283|consen  280 NTLREFGPIIHNQTTSFAVH-IQSMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STHLKRINCAAYRPDFEQCFTGDMNG  357 (397)
T ss_pred             ccccccccccccccccceEE-EeecccceEEEEecCCeEEEEEccCceEEEee-ecccceeeEEeecCchhhhhccccCC
Confidence            4321110   110    111 22111223333344466999999999998886 4557889999999887 899999999


Q ss_pred             cEEEEeC
Q 011457          407 SLWFWDW  413 (485)
Q Consensus       407 ~I~iwd~  413 (485)
                      .|..|-.
T Consensus       358 ni~~w~p  364 (397)
T KOG4283|consen  358 NIYMWSP  364 (397)
T ss_pred             ccccccc
Confidence            9999975

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=3.1e-22  Score=178.85  Aligned_cols=296  Identities=22%  Similarity=0.326  Sum_probs=218.6

Q ss_pred             CCCcceEEEEe-cCCcceEEEEEcc-----CCCEEEEEeCCCeEEEEECCCCc---eEEEEc--ccccCEEEEEEcCC--
Q 011457          162 HAPWKCYRVIS-GHLGWVRSVAFDH-----SNTWFCTGSADRTIKIWDVAKGT---LKLTLT--GHIEQVRGLAVSSK--  228 (485)
Q Consensus       162 ~~~~~~~~~l~-~H~~~V~~l~~sp-----~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~--~h~~~V~~l~~s~~--  228 (485)
                      ..+++....++ .|+.+|..++|++     .-..++|.+. +.+.+|.....-   .+.++.  .|.+....++|+-+  
T Consensus        24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN  102 (385)
T ss_pred             ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence            45677776554 8999999999985     2345677665 568888875443   222222  26677888888753  


Q ss_pred             --CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEec---cCCc
Q 011457          229 --HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALA---GHDN  302 (485)
Q Consensus       229 --~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~  302 (485)
                        +.+++.+|.-|.|+|.|+.++++...+.+|...|..+.++|+ .+++++++.|..|++||+++..++..+.   +|.+
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd  182 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD  182 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence              568999999999999999999999999999999999999997 4699999999999999999999998875   6999


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe----------------------------EeccCCCceEEEEECCC
Q 011457          303 TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML----------------------------TLTHHKKSVRAMALHPT  354 (485)
Q Consensus       303 ~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~----------------------------~~~~~~~~v~~l~~~p~  354 (485)
                      .|.++.|+.++.++++++.|.+|++|++...+...                            +-..|...|-|+.|-  
T Consensus       183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--  260 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--  260 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence            99999999999999999999999999997432110                            011233334444443  


Q ss_pred             CCEEEEEcCCC-EEEEEC-CCCceeeeec------------cCCcccEEEE--EeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457          355 EDCFASASAEN-IKKFNL-PKGEFLHNML------------SQQKTIINSM--AVNEEG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       355 ~~~l~~~~~~~-i~i~d~-~~~~~~~~~~------------~~~~~~i~~~--~~~~~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                      |.++++-+.++ |..|.. .-++.+.+..            .-....|.-+  ++++-+ .|+.|...|.|++||++..+
T Consensus       261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e  340 (385)
T KOG1034|consen  261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE  340 (385)
T ss_pred             hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence            46777777666 888876 2222222111            1122233444  445555 89999999999999999877


Q ss_pred             ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      ..... ....   ......|...+|+.||..|+..+.|++|.=||.-
T Consensus       341 p~~~t-tl~~---s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  341 PPKCT-TLTH---SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CccCc-eEEe---ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            64221 1111   2345679999999999999999999999988753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=182.25  Aligned_cols=274  Identities=19%  Similarity=0.343  Sum_probs=202.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEE--ecccC-Cce
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQNKVIRS--YHGHL-SGV  262 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~~~~~~--~~~h~-~~v  262 (485)
                      ..+|++..+|.|++||..+++.+..+.++...++.+.|..  ....+.+|+.||+|++||++.......  +..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999999999999987  456789999999999999988765443  34454 466


Q ss_pred             EEEEEecCCCEEEEEEC----CCcEEEEECCCCce-EEEe-ccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeE
Q 011457          263 YCLGLHPTIDILLTGGR----DSVCRVWDIRTKMQ-IFAL-AGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       263 ~~l~~~~~~~~l~sg~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                      .|++.+-.++.+++|..    |..|.+||+|..++ +..+ ..|...|+++.|+|.. ++|++||.||.|.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            78887767788888854    77899999998776 4444 4799999999999965 5889999999999999976432


Q ss_pred             ---EeEeccCCCceEEEEECCCC--CEEEEEcCCCEEEEECCCCceeeeeccC------------CcccEEEEEeCCCCe
Q 011457          336 ---MLTLTHHKKSVRAMALHPTE--DCFASASAENIKKFNLPKGEFLHNMLSQ------------QKTIINSMAVNEEGV  398 (485)
Q Consensus       336 ---~~~~~~~~~~v~~l~~~p~~--~~l~~~~~~~i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~  398 (485)
                         +.....+...|..+.|+.++  +.++........+|+++.+.....+...            ....|.+..-...+.
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~  280 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT  280 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence               23334567789999999988  6666667777999999988754443221            112344433333334


Q ss_pred             E-EEEeCCCcEEEEeCC---CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          399 L-ATGGDNGSLWFWDWK---SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       399 l-~sg~~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      + +.|+.-|...++-+.   ++...... ...   ..+|..-|.++.|...+.+|.|||.||.+.+|+.++
T Consensus       281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~-a~l---~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  281 CALAGTDSNKGTIFPLVDTSSGSLLTEP-AIL---QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             EEEeccccCceeEEEeeecccccccCcc-ccc---cCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence            4 444446666666544   22222211 111   124677799999999999999999999999999643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.91  E-value=6.3e-23  Score=197.07  Aligned_cols=125  Identities=21%  Similarity=0.326  Sum_probs=107.3

Q ss_pred             ceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceE------EEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457          166 KCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLK------LTLTGHIEQVRGLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~------~~~~~h~~~V~~l~~s~~~~~l~s~~~d  238 (485)
                      +-+..|.+|.+.|+.+.|+| ...+||||+.|..|+||.+..+...      ..+.+..-.|.++.|+|...-|+..+..
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~  149 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH  149 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence            34667889999999999999 6678999999999999999855322      1233345578899999977666666678


Q ss_pred             CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT  290 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~  290 (485)
                      |.++|||+.+++.+..+.+|...|.+..|+.||.+|++++.|..|+|||-+.
T Consensus       150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            9999999999999999999999999999999999999999999999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=4.7e-22  Score=182.38  Aligned_cols=287  Identities=19%  Similarity=0.264  Sum_probs=215.1

Q ss_pred             CcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCc---------eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          175 LGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGT---------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       175 ~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      ..+|.++.|.++.. .|+||+.|..|+||.+..+.         ....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46799999998766 99999999999999886432         344677899999999999999999999999999999


Q ss_pred             ECC--------C--------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457          245 DLE--------Q--------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF  308 (485)
Q Consensus       245 d~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  308 (485)
                      -..        +        ....+.+.+|...|+.++|+|+++++++++.|..+++||+..|.....+..|...+..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            765        2        234456678999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCCEEEEECCCCeEEeEec----------c---------C----CCceEEEEECCCCCEEEEEcCC-
Q 011457          309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT----------H---------H----KKSVRAMALHPTEDCFASASAE-  364 (485)
Q Consensus       309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~----------~---------~----~~~v~~l~~~p~~~~l~~~~~~-  364 (485)
                      |.|-++++++-+.|...+.+++...+.+....          .         |    ..-.+.++|+|+|.++++.+.- 
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~  252 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF  252 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence            99999999999999877777765433222111          0         1    1124668899999988875431 


Q ss_pred             ----C-----EEEEECCCCceeeeeccCCcccEEE------------------EEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 011457          365 ----N-----IKKFNLPKGEFLHNMLSQQKTIINS------------------MAVNEEGVLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       365 ----~-----i~i~d~~~~~~~~~~~~~~~~~i~~------------------~~~~~~~~l~sg~~dg~I~iwd~~~~~  417 (485)
                          +     .++|+-..-+.....+.........                  +..-|.+.+++......|++||.++-.
T Consensus       253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~  332 (434)
T KOG1009|consen  253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE  332 (434)
T ss_pred             eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence                1     3444332221111111111111111                  122344534444445599999998877


Q ss_pred             ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      ++.....+       |-..|++++|+.+|..|+..+.||...+-.++..+.
T Consensus       333 P~~~v~ni-------hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  333 PLAVVDNI-------HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             ceEEEeee-------eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            77766543       677899999999999999999999988877766553

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=3.3e-22  Score=192.69  Aligned_cols=249  Identities=18%  Similarity=0.302  Sum_probs=196.3

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE--EcccccCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCW  244 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iw  244 (485)
                      +.....|.+.|..+.|-|....|++++.|.++++||++..++...  +.+|...|.+++|.+.+. .|++|+.||.|.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            344558999999999999778999999999999999999998877  899999999999999764 67789999999999


Q ss_pred             ECCCCee---------------------------EEEecccCCceEE---EEEecCCCEEEEEEC-CCcEEEEECCCCce
Q 011457          245 DLEQNKV---------------------------IRSYHGHLSGVYC---LGLHPTIDILLTGGR-DSVCRVWDIRTKMQ  293 (485)
Q Consensus       245 d~~~~~~---------------------------~~~~~~h~~~v~~---l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~  293 (485)
                      |++-...                           ++....+...|.+   +.+..|...|++++. |+.|+|||++....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            9863320                           1112234444555   556667788998888 99999999997654


Q ss_pred             EEEe--------ccC---CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe--EEeEeccCCC--ceEEEEECCCCCEE
Q 011457          294 IFAL--------AGH---DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK--TMLTLTHHKK--SVRAMALHPTEDCF  358 (485)
Q Consensus       294 ~~~~--------~~~---~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~--~v~~l~~~p~~~~l  358 (485)
                      ....        ..|   .-.+.++.....|.+|++.+.|+.|++||+....  ++..+.++..  ....-..+|++.++
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence            4332        123   3367888888889999999999999999998643  2333333221  12223568999999


Q ss_pred             EEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCC
Q 011457          359 ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       359 ~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~  416 (485)
                      ++++.+. .++|.+.+.+.....+.+|...|.++.|.|..  -++++++|-.+++|++..+
T Consensus       333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            9999887 99999999888888888999999999998876  7888899999999999655

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=5.8e-22  Score=180.04  Aligned_cols=238  Identities=23%  Similarity=0.373  Sum_probs=186.0

Q ss_pred             EecCCcceEEEEEccCC--CEEEEEeCCCeEEEEECCC----------------CceEEEEcccccCEEEEEEcCCC-CE
Q 011457          171 ISGHLGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAK----------------GTLKLTLTGHIEQVRGLAVSSKH-TY  231 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~----------------~~~~~~~~~h~~~V~~l~~s~~~-~~  231 (485)
                      .-+|.+.|+.+..++-+  .+.++-+..|.|+||++..                .+.+.++.+|...=..|+|||-. ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34789999999888754  4667777889999999742                35677889999999999999943 24


Q ss_pred             EEEEeCCCcEEEEECCCCeeE---EEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCC---ceEEEeccCCccE
Q 011457          232 MFSAGDDKQVKCWDLEQNKVI---RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTK---MQIFALAGHDNTV  304 (485)
Q Consensus       232 l~s~~~dg~V~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v  304 (485)
                      |++|..-+.|++|...++...   ..+.+|...|-.++|+|.. ..|++|+.||+|+|||++.+   .++.. +.|.+.|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV  305 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV  305 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence            888888899999999887543   3456899999999999974 58999999999999999987   33443 7899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCCEEEEECCC---CeEEeEeccCCCceEEEEECCCCC-EEEEEcCC-CEEEEECCCCce---
Q 011457          305 CSVFTRPTDPQVVTGSHDSTIKFWDLRY---GKTMLTLTHHKKSVRAMALHPTED-CFASASAE-NIKKFNLPKGEF---  376 (485)
Q Consensus       305 ~~l~~~~~~~~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~-~i~i~d~~~~~~---  376 (485)
                      +.|.|+...++|++|+.||+++|||+++   ++++..++.|+.+|++|.|+|... .|++++.| .|.+||+.-..-   
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            9999999999999999999999999986   567889999999999999999654 44444444 499999843211   


Q ss_pred             ------------eeeecc--CCcccEEEEEeCCCC--eEEEEeCCCcEE
Q 011457          377 ------------LHNMLS--QQKTIINSMAVNEEG--VLATGGDNGSLW  409 (485)
Q Consensus       377 ------------~~~~~~--~~~~~i~~~~~~~~~--~l~sg~~dg~I~  409 (485)
                                  ..+++.  .....+..+.|++.-  ++++.+.||.-.
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV  434 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV  434 (440)
T ss_pred             hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence                        001111  123456777888764  888888887543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.1e-22  Score=186.59  Aligned_cols=242  Identities=22%  Similarity=0.331  Sum_probs=189.0

Q ss_pred             EEEEEcc-------CCCEEEEEeCCCeEEEEECCCCc---eE------------------EEEcccccCEEEEEEcCC-C
Q 011457          179 RSVAFDH-------SNTWFCTGSADRTIKIWDVAKGT---LK------------------LTLTGHIEQVRGLAVSSK-H  229 (485)
Q Consensus       179 ~~l~~sp-------~~~~l~tgs~dg~I~iwd~~~~~---~~------------------~~~~~h~~~V~~l~~s~~-~  229 (485)
                      .|++|..       .|+|+|.|+.|..|.|||+.-..   +.                  ..-.+|+..|.++.|+.+ .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5666633       36799999999999999984211   11                  112468888999999865 4


Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457          230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF  308 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  308 (485)
                      +.||+||.|.+|++||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.|........-...+.|-.+.
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~  336 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA  336 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence            67999999999999999999999999989999999999996 66999999999999999995332222112457899999


Q ss_pred             EcCCC-CEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCCceeeee-ccC
Q 011457          309 TRPTD-PQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKGEFLHNM-LSQ  383 (485)
Q Consensus       309 ~~~~~-~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~~~~-~~~  383 (485)
                      |.+.. ..+++++.||+++-+|+|.. +++.++..|..+|.+|++++... ++++++.++ +.+|++.....-... ..-
T Consensus       337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~  416 (463)
T KOG0270|consen  337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF  416 (463)
T ss_pred             ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence            99865 46778889999999999985 89999999999999999998754 566777776 999998654331111 111


Q ss_pred             CcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccc
Q 011457          384 QKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       384 ~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      .-+...|+++.|+-  .++.|+..+.+++||+.+...+.
T Consensus       417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            12347788888876  89999999999999998876543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.2e-21  Score=174.00  Aligned_cols=280  Identities=13%  Similarity=0.139  Sum_probs=219.8

Q ss_pred             eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE
Q 011457          132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL  211 (485)
Q Consensus       132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~  211 (485)
                      -.++.|++.|.++|.+..++.+.+|...    .+..-+.|.+|..+|++++||++|+.|+|+|.|..|++||+..|.+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~----T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFD----TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcc----ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence            3567899999999999999999999764    466788999999999999999999999999999999999999999998


Q ss_pred             EEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEec-----c-cCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          212 TLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYH-----G-HLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       212 ~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~-----~-h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      .+. ..++|....|+|.....+ ++-.+..-.+-++..++  +.+-     + ....-.+..|.+.|+++++|...|.+.
T Consensus       102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            888 679999999999654333 33344444455554322  2211     1 111223446889999999999999999


Q ss_pred             EEECCCCceEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-------E--EeEec--cCCCceEEEEEC
Q 011457          285 VWDIRTKMQIFALAGHD-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-------T--MLTLT--HHKKSVRAMALH  352 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-------~--~~~~~--~~~~~v~~l~~~  352 (485)
                      ++|..+.+++..++-.. ..|..+.++..|..|+.-+.|..||.|+++.-.       .  ...+.  ..+..-.+++|+
T Consensus       179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS  258 (405)
T ss_pred             EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence            99999999998887655 789999999999999999999999999986311       1  11111  122345688999


Q ss_pred             CCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcc
Q 011457          353 PTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       353 p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~  418 (485)
                      .+|.++++++...  +++|....|..++.+.+..+.....+.|.|-.-++..-..|.+++|....-..
T Consensus       259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQVEN  326 (405)
T ss_pred             CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeecccc
Confidence            9999999998665  99999999999888766666778889999988444444889999998765443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=2e-19  Score=179.20  Aligned_cols=290  Identities=32%  Similarity=0.580  Sum_probs=237.4

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-eEEEEccccc-CEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-LKLTLTGHIE-QVRGLAV-SSKHT-YMFSAGD-DKQVKCW  244 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~-~V~~l~~-s~~~~-~l~s~~~-dg~V~iw  244 (485)
                      .+..|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            556899999999999999999999999999999998886 6666766443 7777777 77777 5555444 9999999


Q ss_pred             ECCC-CeeEEEecccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-EEEEEeC
Q 011457          245 DLEQ-NKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-QVVTGSH  321 (485)
Q Consensus       245 d~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~s~  321 (485)
                      ++.. ......+..|...|..++|+|++..+++++. |+.+++|++..+..+..+.+|...+.++.|+|++. .+++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            9998 7888888999999999999999998888886 99999999999889999999999999999999998 5555599


Q ss_pred             CCCEEEEECCCCeEEe-EeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce-eeeeccCCcccEEEEEeCCCC-
Q 011457          322 DSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF-LHNMLSQQKTIINSMAVNEEG-  397 (485)
Q Consensus       322 dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~-  397 (485)
                      |+.|++||...+.... .+..|.... ...|++++.++++++.++ +++|+...... +..+ ..+...+.++.+.|++ 
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCC
Confidence            9999999999888877 677777765 448999998888777776 99999987765 4443 5667889999999966 


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE-ECCCcEEEecCCCCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EADKTIKMWREDETA  467 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~~Dg~I~iW~~~~~~  467 (485)
                      .+++++.|+.+.+||..+........      ...|...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            77778888999999988776555443      12355578899994333566666 688999999998776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1.2e-21  Score=182.18  Aligned_cols=287  Identities=17%  Similarity=0.239  Sum_probs=222.8

Q ss_pred             CCcceeecccCCCCc--ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEEC
Q 011457          128 KSSAIVSTSASSERN--LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~--~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~  204 (485)
                      +...|.+..|+|..+  +++.+.+-+.+-.|+..........+..+..|.++|.+|.|+| +...+++.|.||+|++-|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            556778889999765  7788889999999998644555667778889999999999999 4568999999999999999


Q ss_pred             CCCceE--EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEecccCCceEEEEEecC-CCEEEEEECC
Q 011457          205 AKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPT-IDILLTGGRD  280 (485)
Q Consensus       205 ~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~-~~~l~sg~~d  280 (485)
                      +.+...  .++......+..+.|+.+...++.+..=|...+||++++.. ...+..|...|..++++|- ..+|++++.|
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D  344 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD  344 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence            877543  33333556778889998888888888778999999988754 6667778899999999996 4589999999


Q ss_pred             CcEEEEECCCCc----eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC----CCeEEeEeccCCC-----ceE
Q 011457          281 SVCRVWDIRTKM----QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR----YGKTMLTLTHHKK-----SVR  347 (485)
Q Consensus       281 g~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~----~~~~~~~~~~~~~-----~v~  347 (485)
                      ++++|||++.-.    +......|...|.+..|+|.+..|++.+.|..|+|||..    ...+...+.+...     ...
T Consensus       345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f  424 (498)
T KOG4328|consen  345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF  424 (498)
T ss_pred             cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch
Confidence            999999998532    223344699999999999998889999999999999983    3334444433222     234


Q ss_pred             EEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE-EEEEeCCCC--eEEEEeCCCcEEEEeCC
Q 011457          348 AMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII-NSMAVNEEG--VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i-~~~~~~~~~--~l~sg~~dg~I~iwd~~  414 (485)
                      ...|.|+..+++++..-. |-+||-..++.+..+.......| .-..|+|-+  +++.|+..|.|+||--+
T Consensus       425 KA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  425 KAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             hheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            568999999999988766 99999988887877655554333 345688877  44445567889988644

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=8.4e-22  Score=184.58  Aligned_cols=262  Identities=16%  Similarity=0.237  Sum_probs=211.4

Q ss_pred             CeEEEEECCCCceEEEEcccc--cCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC--ee--EEEecccCCceEEEEEec
Q 011457          197 RTIKIWDVAKGTLKLTLTGHI--EQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQN--KV--IRSYHGHLSGVYCLGLHP  269 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~--~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~--~~--~~~~~~h~~~v~~l~~~~  269 (485)
                      ..+++||....+..-.+..|.  ..+.++.|+....+ +++.+.|..|++|.-...  +.  +....+  ..-.|++...
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s   89 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACAS   89 (673)
T ss_pred             CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhh
Confidence            469999998777666555443  34888999876642 234457889999964322  11  222222  2345666666


Q ss_pred             CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC-CCceEE
Q 011457          270 TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH-KKSVRA  348 (485)
Q Consensus       270 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~  348 (485)
                      ...++++|+..++|+|||++.+.+...+++|.+.|+++.++-.+.+|++++..|.|.|..+.++.....+... ...|+-
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence            6689999999999999999988888889999999999999999999999999999999999999888888766 456779


Q ss_pred             EEECCCCCEEE-EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccccccee
Q 011457          349 MALHPTEDCFA-SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       349 l~~~p~~~~l~-~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      +.|+|..+.++ ++++++ +.+||......+..+...|..+...++|+|.+  +|++.+.|..|.+||..+......+. 
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-  248 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-  248 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-
Confidence            99999877554 566666 99999999999999999999999999999988  89999999999999998765554443 


Q ss_pred             eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          425 IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       425 ~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                              ...+...++|.++|.+|+.|...|.|..||+.....+
T Consensus       249 --------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  249 --------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             --------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence                    3567889999999999999999999999999876644

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=3.2e-19  Score=177.80  Aligned_cols=330  Identities=26%  Similarity=0.508  Sum_probs=259.9

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCc-ceEEEEE-ccCCC-EEEEEeC-CCeEEE
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLG-WVRSVAF-DHSNT-WFCTGSA-DRTIKI  201 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~-~V~~l~~-sp~~~-~l~tgs~-dg~I~i  201 (485)
                      ..+...+....+...+..+...+.+..+..|......   ..+..+.++.. .+..+.+ ++++. +++..+. |+.+.+
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            3577778888888888888888888889999765422   35666666444 8888888 78787 5555445 899999


Q ss_pred             EECCC-CceEEEEcccccCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEEE
Q 011457          202 WDVAK-GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGG  278 (485)
Q Consensus       202 wd~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~  278 (485)
                      |+... ......+..|...|..++|+|++.++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            99988 7888889999999999999999998888885 99999999999899999999999999999999988 555559


Q ss_pred             CCCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-EeEeccCCCceEEEEECCCCC
Q 011457          279 RDSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTED  356 (485)
Q Consensus       279 ~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~  356 (485)
                      .|+.|++||...+..+. .+.+|.... ...|++++..+++++.|+.+++||++.... ...+..|...+.++.|+|++.
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence            99999999999888877 688888875 448999998999999999999999987665 444456788999999999888


Q ss_pred             EEEEEcCCC-EEEEECCCCceeeeec-cCCcccEEEEEeCCC-CeEEEE-eCCCcEEEEeCCCCcccccceeeeccCCCC
Q 011457          357 CFASASAEN-IKKFNLPKGEFLHNML-SQQKTIINSMAVNEE-GVLATG-GDNGSLWFWDWKSGHNFQQAQTIVQPGSLD  432 (485)
Q Consensus       357 ~l~~~~~~~-i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  432 (485)
                      .+++++.++ +.+|+........... ..+...+..+.+.++ ..++.+ ..|+.+.+|++.........         .
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~  368 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL---------E  368 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe---------c
Confidence            888766666 8999988887666654 345556888888444 245544 68899999999877611111         1


Q ss_pred             CCccEEEEEEccCCCEEEE-EECCCcEEEecCCCCCCC
Q 011457          433 SEAGIYALSYDVTGSRLVT-CEADKTIKMWREDETATP  469 (485)
Q Consensus       433 ~~~~V~~l~~s~~g~~L~s-~~~Dg~I~iW~~~~~~~~  469 (485)
                      ....+..+.+.+ ...++. +..++.+.+|+.......
T Consensus       369 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  405 (466)
T COG2319         369 GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL  405 (466)
T ss_pred             CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence            112288888988 544444 689999999999876653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=188.64  Aligned_cols=272  Identities=17%  Similarity=0.257  Sum_probs=209.5

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~  256 (485)
                      .|..++|-|||..|+.+.. ..+.+||.+.|.++.++++|.+.|.|++|+.+|..+++|+.|+.|.+|+.. -+-+-.+ 
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkY-   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKY-   90 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeee-
Confidence            8999999999999888754 569999999999999999999999999999999999999999999999854 3333444 


Q ss_pred             ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457          257 GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM  336 (485)
Q Consensus       257 ~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~  336 (485)
                      .|.+.|.|+.|+|-...|++++-. ..-+|....+... ..+ ....+.+.+|..||.+|+.|-.||+|.+-+- ++++.
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek  166 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEK  166 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcc
Confidence            499999999999998889988764 4678877654322 222 3457889999999999999999999999864 34444


Q ss_pred             eEec---cCCCceEEEEECCCC-----CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC
Q 011457          337 LTLT---HHKKSVRAMALHPTE-----DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG  406 (485)
Q Consensus       337 ~~~~---~~~~~v~~l~~~p~~-----~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg  406 (485)
                      ..+.   +...+|.+++|+|..     ..+++..-+. +..+.+ +|+.+..- ..-+-...|+.+.++| +++.|+.|+
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~-r~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKD-RALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccc-ccCCCCchhheeccCCcEEEEccCCC
Confidence            4443   366799999999964     3455555444 333333 45544321 1223345688888999 999999999


Q ss_pred             cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      .+.+|-- .|-.+.+..        +....|+.++..|++++++.|+.||+|..|++-..
T Consensus       245 ~L~~fTR-~GvrLGTvg--------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  245 QLSLFTR-DGVRLGTVG--------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             ceEEEee-cCeEEeecc--------ccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            9999963 343333332        24567999999999999999999999999987543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=2.6e-21  Score=177.54  Aligned_cols=290  Identities=17%  Similarity=0.197  Sum_probs=225.4

Q ss_pred             cceeecccCCCCc-ccccccccCCCCCCCCCCCC-----CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          130 SAIVSTSASSERN-LSTSAIMERIPSKWPRPEWH-----APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       130 ~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~~~~~-----~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      ..+.+..+..... .++|++.|..+++|....-.     ...+...+|..|...|++|.|+|+|+.||+|+.+|.|.+|.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            4455555555443 89999999999999643322     23456778999999999999999999999999999999998


Q ss_pred             CC--------C--------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEE
Q 011457          204 VA--------K--------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGL  267 (485)
Q Consensus       204 ~~--------~--------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~  267 (485)
                      ..        +        ......+.+|...|..++|+|++.++++++.|+.+++||+..|..+..+..|...|..++|
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw  173 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW  173 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence            65        2        2345667889999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCCceEEEec-------------------cCCc----cEEEEEEcCCCCEEEEEeC---
Q 011457          268 HPTIDILLTGGRDSVCRVWDIRTKMQIFALA-------------------GHDN----TVCSVFTRPTDPQVVTGSH---  321 (485)
Q Consensus       268 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------------------~~~~----~v~~l~~~~~~~~l~s~s~---  321 (485)
                      .|-++++++-+.|...+.+++...+.++...                   .|..    -...++|+|+|.+|++...   
T Consensus       174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~  253 (434)
T KOG1009|consen  174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK  253 (434)
T ss_pred             chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence            9999999999999888888776544332221                   0221    2345678899988886432   


Q ss_pred             -CC-----CEEEEECCC-CeEEeEeccCCCceEEEEECC------------------CCCEEEEEcCCCEEEEECCCCce
Q 011457          322 -DS-----TIKFWDLRY-GKTMLTLTHHKKSVRAMALHP------------------TEDCFASASAENIKKFNLPKGEF  376 (485)
Q Consensus       322 -dg-----~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p------------------~~~~l~~~~~~~i~i~d~~~~~~  376 (485)
                       .+     +.++|+-.. .++...+.....+...+.|+|                  -+..++.++.+.+++||.++...
T Consensus       254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P  333 (434)
T KOG1009|consen  254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP  333 (434)
T ss_pred             eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence             22     234454332 234445555555555555544                  34578889999999999999998


Q ss_pred             eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457          377 LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      +.....-|-..|+.++|+++| +|+..+.||...+..++..+.-
T Consensus       334 ~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  334 LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             eEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            888888888999999999999 9999999999988887766544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.7e-21  Score=173.33  Aligned_cols=296  Identities=16%  Similarity=0.263  Sum_probs=221.5

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC------ceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG------TLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQV  241 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~------~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V  241 (485)
                      +-+.+|.+.|++|.|+.++++|++|+.|..+++|++...      +.+.... .|.+.|.|++|.....++++|+.+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            456799999999999999999999999999999998532      3343332 356899999999999999999999999


Q ss_pred             EEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEEcCCCC-E
Q 011457          242 KCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFTRPTDP-Q  315 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~-~  315 (485)
                      ...|+++.+.+..+.  ...+.|+.+..+|..+.|++.+.++.|.+||.+....   ...+........++.|+|..+ +
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999999888775  2335899999999999999999999999999987652   223334456778889999765 5


Q ss_pred             EEEEeCCCCEEEEECCCCeE-EeEe------ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce-eeeeccCCc-
Q 011457          316 VVTGSHDSTIKFWDLRYGKT-MLTL------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF-LHNMLSQQK-  385 (485)
Q Consensus       316 l~s~s~dg~I~iwd~~~~~~-~~~~------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~-~~~~~~~~~-  385 (485)
                      |++.+..+-+.+||.+.... +...      ......-.++.|+|+|..|.+--.+. -.+||+.+..+ +.++....+ 
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            67888889999999986432 2211      11122346788999999998877776 66778776443 333221221 


Q ss_pred             ----ccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceee---------------eccCCCCCCccEEEEEEccCC
Q 011457          386 ----TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTI---------------VQPGSLDSEAGIYALSYDVTG  446 (485)
Q Consensus       386 ----~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~V~~l~~s~~g  446 (485)
                          ..+.+++|..+..+++|+++=.|++|.+.....-.-+..+               ......+|..-++.+.|++..
T Consensus       290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~  369 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN  369 (609)
T ss_pred             ceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc
Confidence                2466788888888999999999999998532211110000               001123577788999999999


Q ss_pred             CEEEEEECCCcEEEecCC
Q 011457          447 SRLVTCEADKTIKMWRED  464 (485)
Q Consensus       447 ~~L~s~~~Dg~I~iW~~~  464 (485)
                      .+|++.|-.+.++||.--
T Consensus       370 ~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  370 NLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ceEeccchhhheeccccc
Confidence            999999999999999754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.4e-22  Score=207.52  Aligned_cols=280  Identities=17%  Similarity=0.291  Sum_probs=219.9

Q ss_pred             EEEEccCCC-EEEEE----------eCCCeEEEEECC--CCc----eEEEEcccccCEEEEEEcCCCCE----EEEEeCC
Q 011457          180 SVAFDHSNT-WFCTG----------SADRTIKIWDVA--KGT----LKLTLTGHIEQVRGLAVSSKHTY----MFSAGDD  238 (485)
Q Consensus       180 ~l~~sp~~~-~l~tg----------s~dg~I~iwd~~--~~~----~~~~~~~h~~~V~~l~~s~~~~~----l~s~~~d  238 (485)
                      .++|+|.+. ++++|          +.+.++-||.+.  +.+    .+..+. -....+.++|.+.+..    |+.|.+|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            467888776 55544          234556666543  222    222333 3466789999987765    8888999


Q ss_pred             CcEEEEECCC---C---eeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEec--cCCccEEEEEE
Q 011457          239 KQVKCWDLEQ---N---KVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFT  309 (485)
Q Consensus       239 g~V~iwd~~~---~---~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~  309 (485)
                      |.|.+||...   +   ..+.++..|.+.|..+.|++.. ++|++|+.||.|.|||+..-+.-....  ...+.|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            9999999865   2   3566778899999999999974 599999999999999998765554442  24578999999


Q ss_pred             cCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCC--ceEEEEECCCCC-EEEEEcCC-C---EEEEECCCCceeeeec
Q 011457          310 RPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK--SVRAMALHPTED-CFASASAE-N---IKKFNLPKGEFLHNML  381 (485)
Q Consensus       310 ~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--~v~~l~~~p~~~-~l~~~~~~-~---i~i~d~~~~~~~~~~~  381 (485)
                      +.. ...|++++.+|.+.|||++..+.+..+..+..  .+..+.|+|+.. .+++++++ +   |.+||++.-....+.+
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~  249 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL  249 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence            874 34678899999999999999988887766544  578999999874 44455444 3   9999999877777777


Q ss_pred             cCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEECCCcE
Q 011457          382 SQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCEADKTI  458 (485)
Q Consensus       382 ~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~~Dg~I  458 (485)
                      .+|...|.++.|++.+  +|++++.|+.|.+|+.++++.+..+..        ....++.+.|.|... .+++++-||.|
T Consensus       250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--------~~nW~fdv~w~pr~P~~~A~asfdgkI  321 (1049)
T KOG0307|consen  250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--------QGNWCFDVQWCPRNPSVMAAASFDGKI  321 (1049)
T ss_pred             cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--------CCcceeeeeecCCCcchhhhheeccce
Confidence            8999999999999877  999999999999999999998887753        456799999999876 78888999999


Q ss_pred             EEecCCCCCC
Q 011457          459 KMWREDETAT  468 (485)
Q Consensus       459 ~iW~~~~~~~  468 (485)
                      .||.+.....
T Consensus       322 ~I~sl~~~~~  331 (1049)
T KOG0307|consen  322 SIYSLQGTDT  331 (1049)
T ss_pred             eeeeeecCCc
Confidence            9999987663

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=8e-22  Score=184.71  Aligned_cols=250  Identities=14%  Similarity=0.226  Sum_probs=207.8

Q ss_pred             ccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEE
Q 011457          145 TSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA  224 (485)
Q Consensus       145 ~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~  224 (485)
                      ++.+-|+++..|.+.........++.+.|.  .-.|++......|+++|+..+.|+|||+....+.+.+.+|.+.|+++.
T Consensus        51 as~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~  128 (673)
T KOG4378|consen   51 ASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVD  128 (673)
T ss_pred             eecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEE
Confidence            445568888889877754455556666554  444555555568999999999999999998778888999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc-CCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEe-ccCC
Q 011457          225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFAL-AGHD  301 (485)
Q Consensus       225 ~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~  301 (485)
                      ++....||++++..|.|.|..+.++.....|... ...|.-+.|++..+ +|.+++.+|.|.+||+....+++.+ ..|.
T Consensus       129 YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs  208 (673)
T KOG4378|consen  129 YNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS  208 (673)
T ss_pred             ecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence            9999999999999999999999999888777633 34566899999866 6778899999999999988877665 4699


Q ss_pred             ccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee
Q 011457          302 NTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN  379 (485)
Q Consensus       302 ~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~  379 (485)
                      .+...|+|+|.. .+|++.+.|..|.+||++..+....+. ...+...++|.++|.+|++|+..+ ++.||++..+....
T Consensus       209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~  287 (673)
T KOG4378|consen  209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA  287 (673)
T ss_pred             CCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence            999999999965 467889999999999999776665553 356889999999999999998887 99999999888777


Q ss_pred             eccCCcccEEEEEeCCCC
Q 011457          380 MLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       380 ~~~~~~~~i~~~~~~~~~  397 (485)
                      ....|...|++++|-+.-
T Consensus       288 v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  288 VRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EeeecccceeEEEeeecc
Confidence            788888899999998775

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=2.5e-21  Score=175.89  Aligned_cols=207  Identities=21%  Similarity=0.407  Sum_probs=169.1

Q ss_pred             CCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceE---EEEcccccCEEEEEEcCCC-CEEEEEeC
Q 011457          163 APWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLK---LTLTGHIEQVRGLAVSSKH-TYMFSAGD  237 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s~~~-~~l~s~~~  237 (485)
                      ..++++.++.+|.+.=.+|+||| ....|++|..-+.|++|...++.-.   ..+.+|...|..|+|+|.. ..|++|+.
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            45678889999999999999999 3335888888889999999887643   3577899999999999965 57889999


Q ss_pred             CCcEEEEECCCC---eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC---CceEEEeccCCccEEEEEEcC
Q 011457          238 DKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---KMQIFALAGHDNTVCSVFTRP  311 (485)
Q Consensus       238 dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~  311 (485)
                      ||+|+|||++.+   .++.. +.|.+.|+.|.|+....+|++|+.||+++|||+++   ++++..++.|..+|+++.|+|
T Consensus       279 DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p  357 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP  357 (440)
T ss_pred             CceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence            999999999988   34444 78999999999999888999999999999999985   567889999999999999999


Q ss_pred             C-CCEEEEEeCCCCEEEEECCCCeE----------------EeEeccC--CCceEEEEECCCC-CEEEEEcCCCEEEEE
Q 011457          312 T-DPQVVTGSHDSTIKFWDLRYGKT----------------MLTLTHH--KKSVRAMALHPTE-DCFASASAENIKKFN  370 (485)
Q Consensus       312 ~-~~~l~s~s~dg~I~iwd~~~~~~----------------~~~~~~~--~~~v~~l~~~p~~-~~l~~~~~~~i~i~d  370 (485)
                      . ...|++++.|.+|.+||+....-                .+-+..|  ...+..+.|+++- .++++.+.+++.+|.
T Consensus       358 ~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  358 HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence            5 45788899999999999863211                1111123  3467888999875 477788888888775

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=2.9e-21  Score=167.73  Aligned_cols=286  Identities=17%  Similarity=0.246  Sum_probs=205.5

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      ..++.+|++|.+.|+++.|..++. |.+|..-|.|++|++.+......++ .+...|+.+.--|+ ..+.+-+.|+.+.+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            345677889999999999987665 9999999999999999999888888 57788999999888 45788889999999


Q ss_pred             EECCCCeeEEEecccCCceEEEEEec-----CCC----EEEEEECCC-cEEEEECCCCceEEEec----cCCccEEEEEE
Q 011457          244 WDLEQNKVIRSYHGHLSGVYCLGLHP-----TID----ILLTGGRDS-VCRVWDIRTKMQIFALA----GHDNTVCSVFT  309 (485)
Q Consensus       244 wd~~~~~~~~~~~~h~~~v~~l~~~~-----~~~----~l~sg~~dg-~i~iwd~~~~~~~~~~~----~~~~~v~~l~~  309 (485)
                      |++..+..+..   |.-.+.++.|.+     .++    .++.-++.. .+.+-|......+....    +..+.+.+..+
T Consensus        82 w~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   82 WTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            99987554332   333344444443     211    112111111 12223332222232222    23456666664


Q ss_pred             cC-CC--CEEEEEeCCCCEEEEECCCCeE----------EeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCC-
Q 011457          310 RP-TD--PQVVTGSHDSTIKFWDLRYGKT----------MLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKG-  374 (485)
Q Consensus       310 ~~-~~--~~l~s~s~dg~I~iwd~~~~~~----------~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~-  374 (485)
                      .. ++  .++++|.++|.+.+||+.++..          +.....|..+|.++.+.+.-..=++++.+ .+..|++... 
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence            33 22  3567899999999999998743          33345578899999998765544455444 4888877543 


Q ss_pred             -ce-eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457          375 -EF-LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       375 -~~-~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                       .. +.....-.+..+..+.+-||+ .+++++.||.|++|++++...+..+..        |.++|++++|+|+...+++
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky--------Hsagvn~vAfspd~~lmAa  310 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY--------HSAGVNAVAFSPDCELMAA  310 (323)
T ss_pred             CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh--------hhcceeEEEeCCCCchhhh
Confidence             22 222334455668889999999 999999999999999999999888764        7899999999999999999


Q ss_pred             EECCCcEEEecC
Q 011457          452 CEADKTIKMWRE  463 (485)
Q Consensus       452 ~~~Dg~I~iW~~  463 (485)
                      ++.|++|.+|++
T Consensus       311 askD~rISLWkL  322 (323)
T KOG0322|consen  311 ASKDARISLWKL  322 (323)
T ss_pred             ccCCceEEeeec
Confidence            999999999986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.3e-20  Score=180.47  Aligned_cols=244  Identities=16%  Similarity=0.295  Sum_probs=200.4

Q ss_pred             eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC--EEEEEECCCcEEEE
Q 011457          209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVCRVW  286 (485)
Q Consensus       209 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~sg~~dg~i~iw  286 (485)
                      +-..+.+|.+.|++|...|.|.+|++|+.||+|+||.+.++.+++++. ..+.|.|++|+|.++  +|+++- +..+.|.
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence            344678999999999999999999999999999999999999999997 667999999999865  344433 3334444


Q ss_pred             ECCCC-------------------------------------ceEEEeccCCccEEEEEEcCCCCEEEEEeCC---CCEE
Q 011457          287 DIRTK-------------------------------------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHD---STIK  326 (485)
Q Consensus       287 d~~~~-------------------------------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---g~I~  326 (485)
                      +..-|                                     .-++..-.|...|..+.|+..|.+|++...+   ..|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            43211                                     0122233478899999999999999987664   4699


Q ss_pred             EEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457          327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN  405 (485)
Q Consensus       327 iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d  405 (485)
                      |+++...+...-|....+.|.++.|+|...+|++++...+++||+.....+.++ ......|..+++++.| .|+.|+.|
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL-~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKL-LTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHH-hcCCeeeeeeeecCCCCeEEEecCC
Confidence            999988887777877788999999999999999999999999999998777765 3455689999999999 99999999


Q ss_pred             CcEEEEeCCCC-cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          406 GSLWFWDWKSG-HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       406 g~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      +.+..||+.-+ +..+.+.        .|...+++++|++.-.+|++|+.||++.|+--
T Consensus       629 ~k~~WfDldlsskPyk~lr--------~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  629 KKMCWFDLDLSSKPYKTLR--------LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             CeeEEEEcccCcchhHHhh--------hhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            99999999754 3344443        47889999999999999999999999999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=4.6e-20  Score=164.68  Aligned_cols=269  Identities=16%  Similarity=0.279  Sum_probs=204.2

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCC------------ceEEEEcc-cccCEEEEEEc-------CCCCEEEEEeC
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKG------------TLKLTLTG-HIEQVRGLAVS-------SKHTYMFSAGD  237 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~------------~~~~~~~~-h~~~V~~l~~s-------~~~~~l~s~~~  237 (485)
                      ...+.|+|||..|++-+.|..+.+|++...            +...+++- ....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            346789999999999999999999998421            01111111 23567777775       56789999999


Q ss_pred             CCcEEEEECCCCeeEEEecc--cCC---ceEEEEEecCCCEEEEEECCCcEEEEEC-CCCceE--EEe-----ccCCccE
Q 011457          238 DKQVKCWDLEQNKVIRSYHG--HLS---GVYCLGLHPTIDILLTGGRDSVCRVWDI-RTKMQI--FAL-----AGHDNTV  304 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~l~sg~~dg~i~iwd~-~~~~~~--~~~-----~~~~~~v  304 (485)
                      +.-|++||.-+|+....+..  |..   ...+++|+|||..|++| ...+|++||+ +.|...  ...     .+..+.+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999998877753  333   34689999999998875 5678999999 555432  211     2346789


Q ss_pred             EEEEEcCCCC-EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCce-eeee
Q 011457          305 CSVFTRPTDP-QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEF-LHNM  380 (485)
Q Consensus       305 ~~l~~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~-~~~~  380 (485)
                      .+++|+|... .+++|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|.+++...  |..||++.-.. +..+
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L  290 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL  290 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence            9999999665 889999999999999888999999999999999999999999999998654  99999986543 4443


Q ss_pred             ccCCcccEEEEE--eCCCC-eEEEEeCCCcEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457          381 LSQQKTIINSMA--VNEEG-VLATGGDNGSLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD  455 (485)
Q Consensus       381 ~~~~~~~i~~~~--~~~~~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D  455 (485)
                      ..+....-..+.  ..|.+ +|++|+.||.|++||++. |+....+.        .+...++.++++|--.++++++..
T Consensus       291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCc
Confidence            332222333333  45666 999999999999999987 54333322        467789999999998888887653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.87  E-value=1.2e-19  Score=186.69  Aligned_cols=306  Identities=21%  Similarity=0.306  Sum_probs=221.4

Q ss_pred             CCCCCCCCcceEEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCC-------ceEEEEcccccCEEEEEEcCC
Q 011457          157 PRPEWHAPWKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSK  228 (485)
Q Consensus       157 ~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~  228 (485)
                      +.+.|+....++..|..|...|..++.++.. .+|+|||.||+|++||+..-       +...++....+.+.++...+.
T Consensus      1030 p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            4566788889999999999999999998754 99999999999999998542       233344445688999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe-------eEEEecccC-C-ceEEEEEecC-CC-EEEEEECCCcEEEEECCCCceEEEe
Q 011457          229 HTYMFSAGDDKQVKCWDLEQNK-------VIRSYHGHL-S-GVYCLGLHPT-ID-ILLTGGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       229 ~~~l~s~~~dg~V~iwd~~~~~-------~~~~~~~h~-~-~v~~l~~~~~-~~-~l~sg~~dg~i~iwd~~~~~~~~~~  297 (485)
                      ++.+|+++.||.|++.+++...       +.+....+. + .|..-+|... +. .|+.+...+.|..||++.....+.+
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence            9999999999999999997631       222222222 2 2333344332 33 7888899999999999988776665


Q ss_pred             c--cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCCceEEEEECCC---CCEEEEEcC-C-C-EEE
Q 011457          298 A--GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALHPT---EDCFASASA-E-N-IKK  368 (485)
Q Consensus       298 ~--~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~p~---~~~l~~~~~-~-~-i~i  368 (485)
                      +  ...+.|++++.+|.+.++++|+..|.+.+||++.+.++..... +..+|+.+..+|-   +...++++. . + +.+
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            5  3457899999999999999999999999999999998887653 3467887777664   345555544 2 3 999


Q ss_pred             EECCCCceeeeeccCCc-------------------ccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc---------
Q 011457          369 FNLPKGEFLHNMLSQQK-------------------TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ---------  420 (485)
Q Consensus       369 ~d~~~~~~~~~~~~~~~-------------------~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~---------  420 (485)
                      |++.+|.....+.....                   ..+.+....+++.+++|+.|..|+.||....+...         
T Consensus      1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~ 1349 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTS 1349 (1431)
T ss_pred             eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccc
Confidence            99998866554433211                   12344444556699999999999999976433220         


Q ss_pred             --------------------c-------------------ceeeeccCCCCCCccEEEEEEccC-CCEEEEEECCCcEEE
Q 011457          421 --------------------Q-------------------AQTIVQPGSLDSEAGIYALSYDVT-GSRLVTCEADKTIKM  460 (485)
Q Consensus       421 --------------------~-------------------~~~~~~~~~~~~~~~V~~l~~s~~-g~~L~s~~~Dg~I~i  460 (485)
                                          .                   ........+..|...|+++++... ..+|++++.||.|+|
T Consensus      1350 ~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Iki 1429 (1431)
T KOG1240|consen 1350 YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKI 1429 (1431)
T ss_pred             ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeee
Confidence                                0                   000000112346778888887654 357889999999999


Q ss_pred             ec
Q 011457          461 WR  462 (485)
Q Consensus       461 W~  462 (485)
                      |+
T Consensus      1430 Wk 1431 (1431)
T KOG1240|consen 1430 WK 1431 (1431)
T ss_pred             cC
Confidence            95

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=7.2e-21  Score=176.45  Aligned_cols=240  Identities=19%  Similarity=0.312  Sum_probs=186.2

Q ss_pred             CCCcccccccccCCCCCCCCCCCCCCcceE-----------------EEEecCCcceEEEEEccC-CCEEEEEeCCCeEE
Q 011457          139 SERNLSTSAIMERIPSKWPRPEWHAPWKCY-----------------RVISGHLGWVRSVAFDHS-NTWFCTGSADRTIK  200 (485)
Q Consensus       139 ~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~-----------------~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~  200 (485)
                      ..++++|-+.+++.+.+|...--+.-..++                 ..-++|++.|.+++|+.. .+.||+||.|.+|+
T Consensus       190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            456789999999999999754322211111                 112379999999999874 46899999999999


Q ss_pred             EEECCCCceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEecC-CCEEEEE
Q 011457          201 IWDVAKGTLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPT-IDILLTG  277 (485)
Q Consensus       201 iwd~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~-~~~l~sg  277 (485)
                      +||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.+..... ..++ ..+.|-.++|+|. ...++++
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEe
Confidence            9999999999999999999999999985 468999999999999999853322 2333 5678999999986 4578888


Q ss_pred             ECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECC
Q 011457          278 GRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHP  353 (485)
Q Consensus       278 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p  353 (485)
                      ..||+|+-+|+|.. +++++++.|.+.|.+++++..- .++++++.|+.+++|++.....  +..-...-+...|+++.|
T Consensus       349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~  428 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP  428 (463)
T ss_pred             cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCC
Confidence            99999999999975 8999999999999999998864 4678999999999999875433  222111223466778888


Q ss_pred             CCC-EEEEEcCCC-EEEEECCCCceeee
Q 011457          354 TED-CFASASAEN-IKKFNLPKGEFLHN  379 (485)
Q Consensus       354 ~~~-~l~~~~~~~-i~i~d~~~~~~~~~  379 (485)
                      +-. +++.++... +++||+.++..+.+
T Consensus       429 ~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  429 DVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             CcceEEEecCccceEEEeecccChhHHH
Confidence            765 445555555 99999987765543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.4e-21  Score=182.86  Aligned_cols=261  Identities=22%  Similarity=0.370  Sum_probs=190.9

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC--------CceEEEEcccccCEEEEEEcCCCCEEEEEe
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAG  236 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  236 (485)
                      |.+-.++..|.+.|+.++|.|....|++++.||+|++|+++.        -+.+.+|.+|.++|.|+++.+++.++++|+
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            555558889999999999999999999999999999999932        256789999999999999999999999999


Q ss_pred             CCCcEEEEECCCC----------eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--CCccE
Q 011457          237 DDKQVKCWDLEQN----------KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--HDNTV  304 (485)
Q Consensus       237 ~dg~V~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v  304 (485)
                      .||+|++|++..+          .....+.||.+.|+.+++|...+.|++++.||+++.|+...... .++..  ..+.-
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence            9999999966421          23456789999999999999999999999999999999876655 33322  12233


Q ss_pred             EEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCC
Q 011457          305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQ  384 (485)
Q Consensus       305 ~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~  384 (485)
                      .++.+-.......  ..+.....+++...+....+.          +.+.+      ...                ....
T Consensus       443 lsvd~~ss~~a~~--~~s~~~~~~~~~~~ev~s~~~----------~~~s~------~~~----------------~~~~  488 (577)
T KOG0642|consen  443 LSVDRTSSRPAHS--LASFRFGYTSIDDMEVVSDLL----------IFESS------ASP----------------GPRR  488 (577)
T ss_pred             ceEeeccchhHhh--hhhcccccccchhhhhhhhee----------ecccc------CCC----------------cccc
Confidence            4444432221111  122233333333222211111          00000      000                0111


Q ss_pred             cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          385 KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       385 ~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      ...++.+.+.|++ +.+++..|+.|+++|..+++.+....        .|...++++++.|+|.+|++++.||.+++|++
T Consensus       489 ~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--------a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  489 YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--------AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             cCccceEEecCCCCeeEecccCCceecccccccccchhee--------eccceecceeecCCCceEEeecCCceeehhhc
Confidence            2345666677777 89999999999999999998877655        36778999999999999999999999999999


Q ss_pred             CCCCC
Q 011457          464 DETAT  468 (485)
Q Consensus       464 ~~~~~  468 (485)
                      +....
T Consensus       561 d~k~~  565 (577)
T KOG0642|consen  561 DVKTC  565 (577)
T ss_pred             cchhe
Confidence            76543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.3e-21  Score=198.68  Aligned_cols=242  Identities=21%  Similarity=0.360  Sum_probs=200.5

Q ss_pred             CcceEEEEEccCCCE----EEEEeCCCeEEEEECCCC------ceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 011457          175 LGWVRSVAFDHSNTW----FCTGSADRTIKIWDVAKG------TLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKC  243 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~----l~tgs~dg~I~iwd~~~~------~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~i  243 (485)
                      ...-+.++|.+.+..    +|.|..||.|.+||...-      ..+.+...|.+.|..+.|++... .|++|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            345678889886664    889999999999997652      34566788999999999999765 9999999999999


Q ss_pred             EECCCCeeEEEe--cccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCc--cEEEEEEcCCC-CEEE
Q 011457          244 WDLEQNKVIRSY--HGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDN--TVCSVFTRPTD-PQVV  317 (485)
Q Consensus       244 wd~~~~~~~~~~--~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~-~~l~  317 (485)
                      ||+..-+.-.++  ....+.|.+++|+.. ..+|++++.+|.+.|||++..+.+..+..+..  .+..+.|+|+. ..++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            999875544444  224578999999985 45889999999999999999988888876554  47789999976 4566


Q ss_pred             EEeCCC---CEEEEECCCC-eEEeEeccCCCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457          318 TGSHDS---TIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       318 s~s~dg---~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      +++.|.   .|.+||+|.. .+++.+.+|...|.++.|++.+ .++++++.|+ |.+|+.++++.+..+- .....+..+
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv  302 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDV  302 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeee
Confidence            666654   5999999874 4677888999999999999977 7888888877 9999999999999874 477889999


Q ss_pred             EeCCCC--eEEEEeCCCcEEEEeCCCCc
Q 011457          392 AVNEEG--VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       392 ~~~~~~--~l~sg~~dg~I~iwd~~~~~  417 (485)
                      .|+|..  ++++.+-||.|.||.+.++.
T Consensus       303 ~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  303 QWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eecCCCcchhhhheeccceeeeeeecCC
Confidence            999988  89999999999999998765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=1.3e-20  Score=168.44  Aligned_cols=240  Identities=18%  Similarity=0.308  Sum_probs=190.4

Q ss_pred             cCCcceEEEEEccC----CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 011457          173 GHLGWVRSVAFDHS----NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       173 ~H~~~V~~l~~sp~----~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~  247 (485)
                      .|...-..++|+-+    +.++|.|+.-|.|+|.|+.+++....+.+|...|+.+.|+|+. +++++++.|..|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            36777788888653    4589999999999999999999999999999999999999976 688999999999999999


Q ss_pred             CCeeEEEe---cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-------------------------E---E
Q 011457          248 QNKVIRSY---HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-------------------------F---A  296 (485)
Q Consensus       248 ~~~~~~~~---~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-------------------------~---~  296 (485)
                      +..++..+   .+|.+.|.++.|+.+|.+|+++|.|.++++|++...+..                         .   +
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            99999887   679999999999999999999999999999999842110                         0   1


Q ss_pred             eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeE-------------EeEeccCCCceEEE--EECCCCCEEEE
Q 011457          297 LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKT-------------MLTLTHHKKSVRAM--ALHPTEDCFAS  360 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~-------------~~~~~~~~~~v~~l--~~~p~~~~l~~  360 (485)
                      -.-|...|-|+.|-  |+++++-+.++.|..|... -.+.             +..+.-....|.-+  +|.|-+++|+.
T Consensus       247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence            12366677777775  5789999999999999872 1211             22233333344444  55677889999


Q ss_pred             EcCCC-EEEEECCCCceeee-e--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          361 ASAEN-IKKFNLPKGEFLHN-M--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       361 ~~~~~-i~i~d~~~~~~~~~-~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      +...+ +++||+...+.... .  .......|...+|+.++ .|+..++|+.|.-||..
T Consensus       325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            98887 99999988766321 1  22334678999999999 88999999999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=5e-20  Score=177.29  Aligned_cols=157  Identities=20%  Similarity=0.345  Sum_probs=121.3

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCCEEEEECCCC-------eEEeEeccCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCC
Q 011457          304 VCSVFTRP-TDPQVVTGSHDSTIKFWDLRYG-------KTMLTLTHHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPK  373 (485)
Q Consensus       304 v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~  373 (485)
                      |+.+.|.| |...|++++.||.|++|.+..+       .+...++.|...|.++.|+|- ...|++++.+. |.+||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            46667776 4557999999999999998754       345577889999999999995 45777777776 99999999


Q ss_pred             CceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE
Q 011457          374 GEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC  452 (485)
Q Consensus       374 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~  452 (485)
                      ++....+ .+|.+.|..++|+|+| .+++.+.||+|++|+-++++.......    +..  ...--.+.|-.+|+++++.
T Consensus       710 ~~~~~~l-~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~----gpv--gtRgARi~wacdgr~viv~  782 (1012)
T KOG1445|consen  710 AKLYSRL-VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK----GPV--GTRGARILWACDGRIVIVV  782 (1012)
T ss_pred             hhhhhee-ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC----CCc--cCcceeEEEEecCcEEEEe
Confidence            9877775 7888999999999999 999999999999999887654322211    111  1223457788899999998


Q ss_pred             ECCC----cEEEecCCCCC
Q 011457          453 EADK----TIKMWREDETA  467 (485)
Q Consensus       453 ~~Dg----~I~iW~~~~~~  467 (485)
                      |.|+    .|.+|+...-.
T Consensus       783 Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  783 GFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             cccccchhhhhhhhhhhcc
Confidence            8774    58888876533

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6.6e-19  Score=151.48  Aligned_cols=270  Identities=17%  Similarity=0.261  Sum_probs=200.7

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCC----------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      ..|.+-+++|.+++|+.|..+|.|.+..+++.          ..+..+++|.++|..++|.  ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            34666789999999999999999999998532          3455668999999999998  45677775 59999997


Q ss_pred             CCCCee------EEEe--ccc-----CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC
Q 011457          246 LEQNKV------IRSY--HGH-----LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT  312 (485)
Q Consensus       246 ~~~~~~------~~~~--~~h-----~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  312 (485)
                      ......      +...  .-|     --.|++|-+.|..+-++.++.|+.++-||+++|+....+++|++.|.++.-...
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            643221      1111  112     235889999998888888889999999999999999999999999999998777


Q ss_pred             CCEEEEEeCCCCEEEEECCCCeEEeEeccCC----------CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK----------KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS  382 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  382 (485)
                      ...+++|+.||++|+||+++++.+..+...+          ..|-+  +.-+..++++|+.-++.+|+++..+....+  
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgGp~lslwhLrsse~t~vf--  243 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGGPKLSLWHLRSSESTCVF--  243 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCCCceeEEeccCCCceEEE--
Confidence            7899999999999999999999988765422          12344  445678999999889999999999888776  


Q ss_pred             CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CEEEEEECCCcEEEe
Q 011457          383 QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SRLVTCEADKTIKMW  461 (485)
Q Consensus       383 ~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~L~s~~~Dg~I~iW  461 (485)
                      .-...+..+.|..+ .+++++..+.|.-|.+.. .    ++...+    ......++..|+..- ++|-.++....+.|+
T Consensus       244 pipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~G-v----l~a~ip----~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  244 PIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNG-V----LQANIP----VESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ecccceeEeeeecc-eEEEeccccceeeeeecc-E----EEEecc----CCccceeeecccCCceEEEEecccceeeeee
Confidence            34456777788777 666677777888887642 1    111111    123345666665443 344456667777776


Q ss_pred             c
Q 011457          462 R  462 (485)
Q Consensus       462 ~  462 (485)
                      .
T Consensus       314 ~  314 (325)
T KOG0649|consen  314 K  314 (325)
T ss_pred             e
Confidence            4

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.85  E-value=2.5e-21  Score=191.47  Aligned_cols=286  Identities=21%  Similarity=0.383  Sum_probs=227.3

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      .+.++.|.||...|.|+.|...|.++++|+.|..|+||..+++.+.....||.+.|+.++.+.+..++++++.|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            34566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE---ec-cCCccEEEEEEcCCCCEEEEEe
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA---LA-GHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~---~~-~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      .+.++.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-.-.++.   +. .....+.++.+..++..+++++
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999999999999999999953    778999999999982111111   11 1235677888888888999999


Q ss_pred             CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC-CEEEEEcCC-CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457          321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE-DCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-  397 (485)
Q Consensus       321 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-  397 (485)
                      .|+.-..|.......      +...+.-+.++.+- .+.+++-.+ .+++|++.+|...+.. .++...+..+.++|-+ 
T Consensus       336 ~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hpfn~  408 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHPFNP  408 (1113)
T ss_pred             CCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-cccccceeeeeecCCCc
Confidence            999988887653211      11111111122122 223333233 3889999999877774 6788889999999988 


Q ss_pred             -eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          398 -VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       398 -~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                       ...+++.||+..|||+-.|..++....        ....+....|+++|..++....-|.++|.....+...
T Consensus       409 ri~msag~dgst~iwdi~eg~pik~y~~--------gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  409 RIAMSAGYDGSTIIWDIWEGIPIKHYFI--------GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             HhhhhccCCCceEeeecccCCcceeeec--------ccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence             677899999999999998877765541        2456778899999999999988899999987765543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=1.8e-19  Score=160.95  Aligned_cols=270  Identities=18%  Similarity=0.306  Sum_probs=209.6

Q ss_pred             eecccCCCCcccccccccCCCCCCCCCCCCC--------CcceEEEEe-cCCcceEEEEEc-------cCCCEEEEEeCC
Q 011457          133 VSTSASSERNLSTSAIMERIPSKWPRPEWHA--------PWKCYRVIS-GHLGWVRSVAFD-------HSNTWFCTGSAD  196 (485)
Q Consensus       133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~--------~~~~~~~l~-~H~~~V~~l~~s-------p~~~~l~tgs~d  196 (485)
                      -.+.++|+|..+.+.+.|.....|+.|...-        .++...+++ ...+.|...+|-       |+..++++.+.|
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            3456889999998999999999998776421        223333333 234567777775       677899999999


Q ss_pred             CeEEEEECCCCceEEEEcc--ccc---CEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeeEEEe-------cccCCceE
Q 011457          197 RTIKIWDVAKGTLKLTLTG--HIE---QVRGLAVSSKHTYMFSAGDDKQVKCWDL-EQNKVIRSY-------HGHLSGVY  263 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~--h~~---~V~~l~~s~~~~~l~s~~~dg~V~iwd~-~~~~~~~~~-------~~h~~~v~  263 (485)
                      .-|++||.-+|++...+.+  |..   ...+++|+|||.+|++| ....|+++|+ +.|+-...+       .+..+-+.
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            9999999999999988765  333   34689999999999987 5689999999 444321111       23467799


Q ss_pred             EEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CCCEEEEECCCC-eEEeEec
Q 011457          264 CLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DSTIKFWDLRYG-KTMLTLT  340 (485)
Q Consensus       264 ~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~I~iwd~~~~-~~~~~~~  340 (485)
                      |++|+|- ...++.|+....+-||.-..+.++..+.+|.+.|+.+.|.++|+.|++|.. |-.|..||++.. .++..+.
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~  291 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE  291 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence            9999995 458999999999999999999999999999999999999999999999876 678999999974 4556666


Q ss_pred             cCCC-ceE--EEEECCCCCEEEEEcCCC-EEEEECCC-CceeeeeccCCcccEEEEEeCCCC-eEEEEeC
Q 011457          341 HHKK-SVR--AMALHPTEDCFASASAEN-IKKFNLPK-GEFLHNMLSQQKTIINSMAVNEEG-VLATGGD  404 (485)
Q Consensus       341 ~~~~-~v~--~l~~~p~~~~l~~~~~~~-i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~  404 (485)
                      .|.. .-.  -+...|++++|++|+.++ |.+||+.+ +..+.. ...+...++.++++|-- ++++++.
T Consensus       292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccC
Confidence            5544 222  345578999999998887 99999988 553443 46778889999999987 5555543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=2.3e-19  Score=164.14  Aligned_cols=204  Identities=19%  Similarity=0.297  Sum_probs=165.3

Q ss_pred             EecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcE
Q 011457          171 ISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQV  241 (485)
Q Consensus       171 l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V  241 (485)
                      +.||+++|..++|+| +.+.+|+||.|.+|+||++..+       +.+..+.+|...|--++|+|.. +.|++++.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            459999999999999 5668999999999999998655       3467789999999999999965 678899999999


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc-EEEEEEcCCCCEEEEEe
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT-VCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~s  320 (485)
                      .+||+.+++.+-++. |...|+++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.++..+-+|.
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf  235 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF  235 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence            999999999988888 9999999999999999999999999999999999999988888763 34455666777554443


Q ss_pred             ---CCCCEEEEECCCCeEE---eEeccCCCceEEEEECCCCCEEEEEcCC--CEEEEECCCCce
Q 011457          321 ---HDSTIKFWDLRYGKTM---LTLTHHKKSVRAMALHPTEDCFASASAE--NIKKFNLPKGEF  376 (485)
Q Consensus       321 ---~dg~I~iwd~~~~~~~---~~~~~~~~~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~  376 (485)
                         .+..+-+||..+....   ..+.. ...|.---|.++...+..++.+  +|+.|.+.+...
T Consensus       236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence               4678999997764432   23332 3456666678888877666544  399998877653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=3.5e-18  Score=171.20  Aligned_cols=291  Identities=20%  Similarity=0.281  Sum_probs=216.1

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC--C--ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--G--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~  248 (485)
                      .|.-.++|.+++|+++++|+|..||.|.+|.--.  +  .....+.-|...|.+++|+++|.+|++||..|.+-+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            5777899999999999999999999999997432  1  23455677899999999999999999999999999999999


Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc-----------CCccEEEEEEcCCCCEEE
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG-----------HDNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~l~~~~~~~~l~  317 (485)
                      ++ .+-+..-.++|..+.++||+++.+....|..|.+..+.+.+....+.+           ..+-.+.++++|.-+.++
T Consensus       283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            98 444455778999999999999999999999999998765544333332           234567788999777888


Q ss_pred             EEeCCCCEEEEECCCCeEEeEecc-----------CCCceEEEEECCCCCEEEEEcC--------CC---EEEEECCCCc
Q 011457          318 TGSHDSTIKFWDLRYGKTMLTLTH-----------HKKSVRAMALHPTEDCFASASA--------EN---IKKFNLPKGE  375 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~~~~~~~-----------~~~~v~~l~~~p~~~~l~~~~~--------~~---i~i~d~~~~~  375 (485)
                      -.+..|.|.+||+-+.+.+..+..           +...+++++.+-.|.++++...        ++   +++|-.....
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~  441 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS  441 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence            899999999999988777665421           1225777888888999988732        22   7778665433


Q ss_pred             e----eeeeccCCccc-EEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccce---eeeccCCCCCCccEEEEEEccC
Q 011457          376 F----LHNMLSQQKTI-INSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQ---TIVQPGSLDSEAGIYALSYDVT  445 (485)
Q Consensus       376 ~----~~~~~~~~~~~-i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~V~~l~~s~~  445 (485)
                      .    ...+...|+.. +..+..++..  ..++++.||.++||-+...+......   .....++ -|...+++++|+.|
T Consensus       442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s-y~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS-YHKTPITALCFSQD  520 (792)
T ss_pred             ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec-cccCcccchhhcCC
Confidence            2    22333445443 3444444433  78999999999999985443322211   1111122 26788999999999


Q ss_pred             CCEEEEEECCCcEEEecCCCC
Q 011457          446 GSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       446 g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      |. +++++.|++|.+||..+.
T Consensus       521 Gs-lla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  521 GS-LLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             Cc-EEEEecCCEEEEecCCCh
Confidence            95 555668999999999983

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=3.3e-17  Score=149.17  Aligned_cols=285  Identities=15%  Similarity=0.222  Sum_probs=212.9

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--KQVKCWDLEQNKVI  252 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~V~iwd~~~~~~~  252 (485)
                      ...+..+.|+.+...|..|+.|| -++|+.+..............|-.+-|+.  .+++..+.+  +.++++++..+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            45677788999999999999998 68888876655333333334455566654  455555443  46999999988888


Q ss_pred             EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc---CCccEEEEEEcCCCCEEEEE--eCCCCEEE
Q 011457          253 RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG---HDNTVCSVFTRPTDPQVVTG--SHDSTIKF  327 (485)
Q Consensus       253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~s~--s~dg~I~i  327 (485)
                      ..+. ....|.++.++.+  .|+++-.+ .|+|||+++.+.++++..   +...+.++.+++.+.+++.-  ...|.|.+
T Consensus        82 Ce~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             EEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            8876 6778999999864  56665554 499999999999888763   45567777777777788753  34689999


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCc-ccEEEEEeCCCC-eEEEEe
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQK-TIINSMAVNEEG-VLATGG  403 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~sg~  403 (485)
                      ||+.+.+++..+..|++++.+++|+++|.+|+++++.+  |++|.+++|+.+.++..+.. ..|.+++|++++ +|++.+
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS  237 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS  237 (391)
T ss_pred             EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence            99999999999999999999999999999999999998  99999999999999876554 568899999999 888999


Q ss_pred             CCCcEEEEeCCCCcccccceeee-------------------------cc-----CCCCC--CccEEEEEEccCCCEEEE
Q 011457          404 DNGSLWFWDWKSGHNFQQAQTIV-------------------------QP-----GSLDS--EAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~~~-------------------------~~-----~~~~~--~~~V~~l~~s~~g~~L~s  451 (485)
                      +.++|++|.++....-.......                         +.     ..+..  ...+..+.-.+...++..
T Consensus       238 ~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v  317 (391)
T KOG2110|consen  238 NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV  317 (391)
T ss_pred             CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence            99999999986532110000000                         00     00001  112333333457789999


Q ss_pred             EECCCcEEEecCCCC
Q 011457          452 CEADKTIKMWREDET  466 (485)
Q Consensus       452 ~~~Dg~I~iW~~~~~  466 (485)
                      ++.||.++.|.++..
T Consensus       318 as~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  318 ASYDGHLYSYRLPPK  332 (391)
T ss_pred             EEcCCeEEEEEcCCC
Confidence            999999999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.8e-19  Score=168.19  Aligned_cols=211  Identities=18%  Similarity=0.325  Sum_probs=162.2

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE-cccccCEEEEEEcC--CCCEEEEEeCCCcE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL-TGHIEQVRGLAVSS--KHTYMFSAGDDKQV  241 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~s~--~~~~l~s~~~dg~V  241 (485)
                      ..+-..|.||+|.|+|++|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|-|  +...+++|..|..|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            4455678899999999999999999999999999999999888887776 57999999999998  45789999999999


Q ss_pred             EEEECCC----------CeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEE----------EeccC
Q 011457          242 KCWDLEQ----------NKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF----------ALAGH  300 (485)
Q Consensus       242 ~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~----------~~~~~  300 (485)
                      +++|+..          .+.++.+..|...|..++..|++ +.+.+++.||+|+-+|++......          .+...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999974          23456677899999999999987 799999999999999998632111          11112


Q ss_pred             CccEEEEEEcCCCC-EEEEEeCCCCEEEEECCCC--------e----------EEeEec-cCC-----------CceEEE
Q 011457          301 DNTVCSVFTRPTDP-QVVTGSHDSTIKFWDLRYG--------K----------TMLTLT-HHK-----------KSVRAM  349 (485)
Q Consensus       301 ~~~v~~l~~~~~~~-~l~s~s~dg~I~iwd~~~~--------~----------~~~~~~-~~~-----------~~v~~l  349 (485)
                      --...++.++|..+ +|++|+.|-..++||.+..        .          ++..+. +|-           ..++-+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            23567888998654 7889999999999995421        1          111111 111           125567


Q ss_pred             EECCCCCEE-EEEcCCCEEEEECCCCc
Q 011457          350 ALHPTEDCF-ASASAENIKKFNLPKGE  375 (485)
Q Consensus       350 ~~~p~~~~l-~~~~~~~i~i~d~~~~~  375 (485)
                      +|+|+|.-+ ++-+.+.++++|+..++
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            899998755 45555569999986554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=3.2e-19  Score=172.68  Aligned_cols=271  Identities=15%  Similarity=0.210  Sum_probs=208.2

Q ss_pred             ceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q 011457          131 AIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK  210 (485)
Q Consensus       131 ~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~  210 (485)
                      .|....|.|+|..+.-+..++ +.+++..    ...++.+|+||.+.|.|++|+.||+.||+|+.|..|.+|+-+ .+-+
T Consensus        14 ci~d~afkPDGsqL~lAAg~r-lliyD~n----dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSR-LLVYDTS----DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGI   87 (1081)
T ss_pred             chheeEECCCCceEEEecCCE-EEEEeCC----CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccce
Confidence            566777888887554433332 2344332    356788999999999999999999999999999999999843 2223


Q ss_pred             EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 011457          211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT  290 (485)
Q Consensus       211 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~  290 (485)
                      ..+ .|.+.|.|+.|+|-...|++|+-. ..-+|..++....+ .+ ....+.+++|..||.+|+.|-.||+|.+-+-. 
T Consensus        88 LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-  162 (1081)
T KOG1538|consen   88 LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-  162 (1081)
T ss_pred             eee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-
Confidence            333 399999999999999999999763 47789877544333 22 45678999999999999999999999998754 


Q ss_pred             CceEEEe---ccCCccEEEEEEcCCC-----CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457          291 KMQIFAL---AGHDNTVCSVFTRPTD-----PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       291 ~~~~~~~---~~~~~~v~~l~~~~~~-----~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      ++....+   .+.+++|.+++|+|..     ..+++.....++.+|.+. |+.+..-....-...|+.+.++|.++..|+
T Consensus       163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG  241 (1081)
T KOG1538|consen  163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG  241 (1081)
T ss_pred             CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence            3333333   3577899999999863     467888888888888875 555543333444567899999999999998


Q ss_pred             CCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          363 AENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       363 ~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      .+++.-+-.+.|-.+.++ ...+..|..+...|++ .++.|+.||+|..|++-
T Consensus       242 sdk~L~~fTR~GvrLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  242 SDKQLSLFTRDGVRLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CCCceEEEeecCeEEeec-cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            888555555777777765 5578899999999999 99999999999999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=1.4e-18  Score=158.94  Aligned_cols=207  Identities=18%  Similarity=0.287  Sum_probs=166.6

Q ss_pred             EEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eeEEEecccCCceEEEEEecC-CCEEEEEECCCc
Q 011457          212 TLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQN-------KVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSV  282 (485)
Q Consensus       212 ~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~  282 (485)
                      .+.+|.++|..++|+| +.+.||+|++|.+|.||.+..+       +.+..+.+|...|-.++|||. .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4578999999999999 5577999999999999998655       356778899999999999997 568999999999


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEE
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASA  361 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~  361 (485)
                      |.+||+.+++.+.++. |.+.|.++.|+.+|.+|++.+.|..|+|||.++++.+..-..|.+ .-..+.|-.++.++.+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999999988 999999999999999999999999999999999999988877765 33445566778866665


Q ss_pred             cCC----CEEEEECCCCceeeee-ccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccc
Q 011457          362 SAE----NIKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       362 ~~~----~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      ...    .+.+||-.+-+....+ .......|.-=.+.++.  +.++|-.|+.|+.|.+.+...+
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~  299 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF  299 (472)
T ss_pred             cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence            432    3889987654433222 11223445555566666  6678888999999999876543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=4.1e-18  Score=150.04  Aligned_cols=277  Identities=19%  Similarity=0.304  Sum_probs=202.9

Q ss_pred             CCEEEEEe----CCCeEEEEECCCCc---eEEEEcccccCEEEEEEcCCCCE-EEEEeCC-------CcEEEEECCCC--
Q 011457          187 NTWFCTGS----ADRTIKIWDVAKGT---LKLTLTGHIEQVRGLAVSSKHTY-MFSAGDD-------KQVKCWDLEQN--  249 (485)
Q Consensus       187 ~~~l~tgs----~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~~-l~s~~~d-------g~V~iwd~~~~--  249 (485)
                      .-.|++|.    .|+.|.+.++..+.   ....|..|.+.|..++-+|..+. |+++..+       ..+.||.+...  
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~  105 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG  105 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence            33456665    36788887776543   23456678899999999996654 4555332       35789988643  


Q ss_pred             -------eeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce-EEEec-----cCCccEEEEEEcC--CC
Q 011457          250 -------KVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-IFALA-----GHDNTVCSVFTRP--TD  313 (485)
Q Consensus       250 -------~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~l~~~~--~~  313 (485)
                             +++..+. .+-+.|.|+.|.|+++.+++-. |..|.+|++..... +..+.     .+....++-.|+|  ++
T Consensus       106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg  184 (370)
T KOG1007|consen  106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG  184 (370)
T ss_pred             ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence                   2334443 4556899999999999988876 88899999987765 33332     3556778889998  67


Q ss_pred             CEEEEEeCCCCEEEEECCCCeEEeEec-cCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEE
Q 011457          314 PQVVTGSHDSTIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINS  390 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~  390 (485)
                      +.+++. .|+++..||+++.++...+. .|...|+.+.|+|+.. +|++|++++ +++||.++-+....-+.+|...+.+
T Consensus       185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            777765 58999999999988776664 5777899999999876 566777776 9999999988877778899999999


Q ss_pred             EEeCCCC--eEEEEeCCCcEEEEeCCCCccccccee-----------------eecc----CCCCCCccEEEEEEccCCC
Q 011457          391 MAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQT-----------------IVQP----GSLDSEAGIYALSYDVTGS  447 (485)
Q Consensus       391 ~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~-----------------~~~~----~~~~~~~~V~~l~~s~~g~  447 (485)
                      +.|+|.-  ++++|+.|..|.+|...+-..-+.+..                 ..+.    ..-.|+..|++++|+.-..
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence            9999976  999999999999997643221111000                 0111    1235889999999998666


Q ss_pred             E-EEEEECCCcEEEecCCC
Q 011457          448 R-LVTCEADKTIKMWREDE  465 (485)
Q Consensus       448 ~-L~s~~~Dg~I~iW~~~~  465 (485)
                      + |++-+.||.+.|=++..
T Consensus       344 WiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  344 WIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             eeEEEeccCceEEeecCCh
Confidence            5 56779999999877654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=7.6e-19  Score=154.63  Aligned_cols=244  Identities=21%  Similarity=0.315  Sum_probs=187.8

Q ss_pred             CCCCCcceeecccCCCC-ccccccccc-------CCCCCCCCCCCCCC-----cceEEEEe-cCCcceEEEEEccCCCEE
Q 011457          125 ASGKSSAIVSTSASSER-NLSTSAIME-------RIPSKWPRPEWHAP-----WKCYRVIS-GHLGWVRSVAFDHSNTWF  190 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~-~~~~t~~~~-------~~~~~w~~~~~~~~-----~~~~~~l~-~H~~~V~~l~~sp~~~~l  190 (485)
                      +-.+.+.|+.++.+|-. .+++|+-.+       ....+|..|+...+     +.++..|. .|-+.|.||.|.|++..+
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL  138 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence            44567778888777744 445554321       33468988886555     88888887 778899999999999999


Q ss_pred             EEEeCCCeEEEEECCCCce-EEEEc-----ccccCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEe-cccCCc
Q 011457          191 CTGSADRTIKIWDVAKGTL-KLTLT-----GHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSG  261 (485)
Q Consensus       191 ~tgs~dg~I~iwd~~~~~~-~~~~~-----~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~~~  261 (485)
                      ++-. |..|.+|++..+.. +..+.     ++....++-+|+|  +++.+++. .|+++..||+++.+....+ ..|...
T Consensus       139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~  216 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQR  216 (370)
T ss_pred             EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcce
Confidence            8875 78999999987765 33332     2556778889998  66777776 5799999999988777666 468888


Q ss_pred             eEEEEEecCCC-EEEEEECCCcEEEEECCC-CceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCC-----
Q 011457          262 VYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYG-----  333 (485)
Q Consensus       262 v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~-----  333 (485)
                      |..+.|+|+.+ +|++|+.||.|+|||.+. ..++..+.+|...|.++.|+|. +.++++|+.|..|.+|....-     
T Consensus       217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q  296 (370)
T KOG1007|consen  217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ  296 (370)
T ss_pred             eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence            99999999865 789999999999999984 5678999999999999999995 457789999999999965321     


Q ss_pred             ------------------------eEEeEeccCCCceEEEEECCCCC-EEEEEcCCC-EEEEE
Q 011457          334 ------------------------KTMLTLTHHKKSVRAMALHPTED-CFASASAEN-IKKFN  370 (485)
Q Consensus       334 ------------------------~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d  370 (485)
                                              ..+.++..|...|.+++|+.-.. .|++-+.|+ +.+=.
T Consensus       297 i~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  297 IEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             cccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence                                    12345677889999999998666 456667777 44433

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=4e-19  Score=169.60  Aligned_cols=253  Identities=19%  Similarity=0.268  Sum_probs=198.7

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCC----CCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPR----PEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW  202 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~----~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw  202 (485)
                      .|-+.|....+++....++++.-+.++.+|..    +......+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            45667778889999999999999999999987    22344678999999999999999999999999999999999999


Q ss_pred             ECCCC----------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc--CCceEEEEEecC
Q 011457          203 DVAKG----------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH--LSGVYCLGLHPT  270 (485)
Q Consensus       203 d~~~~----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~  270 (485)
                      ++...          .+..++.||.+.|..+++++....|++|+.||+|++|+...... .++...  .+.-.++++-..
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss  450 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS  450 (577)
T ss_pred             ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence            66421          34557889999999999999999999999999999999866555 334322  223345555433


Q ss_pred             C-CEEEEEECCCcEEEEECCCCceEEEecc-------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC
Q 011457          271 I-DILLTGGRDSVCRVWDIRTKMQIFALAG-------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH  342 (485)
Q Consensus       271 ~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  342 (485)
                      . ...++...-+.-.++++.....+..+..       ....+.-+.++|...+.+++..|+.|+++|..+++.+.....|
T Consensus       451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~  530 (577)
T KOG0642|consen  451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH  530 (577)
T ss_pred             hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec
Confidence            2 2333333444444555555544444432       1245677888999999999999999999999999999999999


Q ss_pred             CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          343 KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       343 ~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      ...++++++.|+|.+|++++.++ +.+|.+....++...
T Consensus       531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             cceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            99999999999999999999998 999998766655543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.5e-19  Score=165.76  Aligned_cols=294  Identities=18%  Similarity=0.332  Sum_probs=225.8

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEcCC--CCEEEEEeCCCcE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSK--HTYMFSAGDDKQV  241 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~--~~~l~s~~~dg~V  241 (485)
                      +.+...|.+|.|.|+.|.|+..|..|++|+.|..|.+||..++.....+. +|...|..-.|-|.  ..-+++++.||.|
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            56777889999999999999999999999999999999999998887764 68888888888874  4679999999999


Q ss_pred             EEEECCCCee---EEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEec---cCCc---cEEEEEEcC
Q 011457          242 KCWDLEQNKV---IRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALA---GHDN---TVCSVFTRP  311 (485)
Q Consensus       242 ~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~---~v~~l~~~~  311 (485)
                      ++=.+.....   ...+..|.+.|.-++.-|+. ..|.+++.|+.+.-+|++.......+.   .+..   ....++..|
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            9987754322   34456799999999999864 579999999999999999876543332   2333   567888888


Q ss_pred             CCC-EEEEEeCCCCEEEEECCCCeE------EeEec------cCCCceEEEEECCC-CCEEEEEcCCCEEEEECCC--C-
Q 011457          312 TDP-QVVTGSHDSTIKFWDLRYGKT------MLTLT------HHKKSVRAMALHPT-EDCFASASAENIKKFNLPK--G-  374 (485)
Q Consensus       312 ~~~-~l~s~s~dg~I~iwd~~~~~~------~~~~~------~~~~~v~~l~~~p~-~~~l~~~~~~~i~i~d~~~--~-  374 (485)
                      ... ++++|+.|-.+++||.+.-..      +..+.      .....|++++|+.+ +.++++-.+..|++|.-..  | 
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~  371 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS  371 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence            665 899999999999999875322      22222      22346999999955 5566677777799995432  2 


Q ss_pred             ---------ceeeeeccCCc--ccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEE
Q 011457          375 ---------EFLHNMLSQQK--TIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS  441 (485)
Q Consensus       375 ---------~~~~~~~~~~~--~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  441 (485)
                               ......+.+|.  ..|..+.|-. .. ++++|++-|.|.||+-++++.+..+..        ...-|+|+.
T Consensus       372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg--------Dr~VVNCLE  443 (559)
T KOG1334|consen  372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG--------DRHVVNCLE  443 (559)
T ss_pred             CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc--------ccceEeccC
Confidence                     12223234443  3366666544 44 999999999999999999988877653        233799999


Q ss_pred             EccCCCEEEEEECCCcEEEecCCCC
Q 011457          442 YDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       442 ~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      -+|.-..||++|-|..|+||...+.
T Consensus       444 pHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             CCCCCchhhccCCccceeeecCCcc
Confidence            9999999999999999999987443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=1.4e-16  Score=154.93  Aligned_cols=267  Identities=12%  Similarity=0.201  Sum_probs=178.9

Q ss_pred             EEEEeCCCeEEEEECCC-Cc--eEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCee--EEEecccCCce
Q 011457          190 FCTGSADRTIKIWDVAK-GT--LKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLE-QNKV--IRSYHGHLSGV  262 (485)
Q Consensus       190 l~tgs~dg~I~iwd~~~-~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~-~~~~--~~~~~~h~~~v  262 (485)
                      +++...|+.|.+|++.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|++. +++.  +.... .....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence            34446789999999964 33  444454 345677899999999987765 58899999996 3332  22222 33456


Q ss_pred             EEEEEecCCCEEEEEEC-CCcEEEEECCCCc----eEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeEE
Q 011457          263 YCLGLHPTIDILLTGGR-DSVCRVWDIRTKM----QIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKTM  336 (485)
Q Consensus       263 ~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~~  336 (485)
                      ..++|+|++++|++++. ++.|.+||+.+..    .+..+. +......+.++|+++++++++ .++.|.+||+.+...+
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            78999999998888775 8899999997432    223232 233466788999999886554 5689999999763322


Q ss_pred             eE-----ec-cCCCceEEEEECCCCCEEEEEcC--CCEEEEECCC--Cce--eeeecc--C---CcccEEEEEeCCCC-e
Q 011457          337 LT-----LT-HHKKSVRAMALHPTEDCFASASA--ENIKKFNLPK--GEF--LHNMLS--Q---QKTIINSMAVNEEG-V  398 (485)
Q Consensus       337 ~~-----~~-~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~--~~~--~~~~~~--~---~~~~i~~~~~~~~~-~  398 (485)
                      ..     .. ......+.+.|+|+++++++++.  +.|.+|++..  ++.  +..+..  .   .......+.++|++ +
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence            11     11 12345678999999999988775  3399999873  322  222211  1   11223468899999 6


Q ss_pred             EEEEe-CCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-CCcEEEecCCC
Q 011457          399 LATGG-DNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-DKTIKMWREDE  465 (485)
Q Consensus       399 l~sg~-~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~~  465 (485)
                      ++++. .++.|.+|++..... ........ .     ......+.|+++|++|+++.. +++|.+|+++.
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~-~-----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVLSFEGHQP-T-----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeEEEeEEEe-c-----cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            77664 468999999965432 21111111 1     123456899999999998775 89999998864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.4e-17  Score=169.03  Aligned_cols=288  Identities=14%  Similarity=0.279  Sum_probs=211.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccc---ccCEEEEEEcC--CCCEEEEEeCCCcEEEEECC---
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLE---  247 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~---  247 (485)
                      +.-..+.|+|-...++++...-.|+|||.+.++....|..+   ...|+.+.+-.  |..++++|+.||.|+||+-.   
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            34567888998888999987789999999999988777654   35688888865  45689999999999999642   


Q ss_pred             --CCeeEEEecc-------cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcC-CCCEE
Q 011457          248 --QNKVIRSYHG-------HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRP-TDPQV  316 (485)
Q Consensus       248 --~~~~~~~~~~-------h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~-~~~~l  316 (485)
                        ..+.+..+.+       ..+.=.-++|.....+|+++|.-..|+|||......+..+. +....|+++.-+- .|+.+
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence              2234443322       11222456787776677777778899999999887777665 3445677775443 46899


Q ss_pred             EEEeCCCCEEEEECCCCe---EEeEeccCCCc--eEEEEECCCCCE-EEEEcCCC-EEEEECCCCcee--eeeccCC--c
Q 011457          317 VTGSHDSTIKFWDLRYGK---TMLTLTHHKKS--VRAMALHPTEDC-FASASAEN-IKKFNLPKGEFL--HNMLSQQ--K  385 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~---~~~~~~~~~~~--v~~l~~~p~~~~-l~~~~~~~-i~i~d~~~~~~~--~~~~~~~--~  385 (485)
                      ++|..||.|++||.+...   .+...+.|...  |..+.+.+.|.- +++++.++ |++||++.....  ..+..+-  +
T Consensus      1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred             EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence            999999999999998654   35566777766  999999987764 88888877 999999885211  1111111  2


Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCC-CCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          386 TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL-DSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       386 ~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      +..+++.+++.. .+++|+. +.|.||++.. +.+..++..  ++.. .....+.|++|+|..-+|++|..|.+|.||..
T Consensus      1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n--~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYN--PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             ccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccC--cccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence            358999999988 8888877 9999999864 333333321  1111 22445799999999999999999999999988


Q ss_pred             CCCC
Q 011457          464 DETA  467 (485)
Q Consensus       464 ~~~~  467 (485)
                      ....
T Consensus      1381 ~k~~ 1384 (1387)
T KOG1517|consen 1381 EKPR 1384 (1387)
T ss_pred             CCcC
Confidence            7654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=2.6e-17  Score=147.12  Aligned_cols=234  Identities=14%  Similarity=0.192  Sum_probs=179.6

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      .+.--..+|+|.+|++|...+|++..+..|.||.....+   ..+++..|...|+.++|+|..+.|++|+.|..-++|..
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            344456899999999999999999999999999976554   67788999999999999999999999999999999998


Q ss_pred             -CCCe--eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE----EeccCCccEEEEEEcCCCCEEEEE
Q 011457          247 -EQNK--VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       247 -~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                       +.++  ..-.+..++..++++.|+|.++.|++|+.-..|.||-++....-.    .-+.+.+.|+++.|+|++-+|++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence             4443  334445688999999999999999999999999999887544332    223567889999999999999999


Q ss_pred             eCCCCEEEEECC------------------CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc-eeee
Q 011457          320 SHDSTIKFWDLR------------------YGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE-FLHN  379 (485)
Q Consensus       320 s~dg~I~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~-~~~~  379 (485)
                      +.|+..++|..-                  .|..+.++....+.+..+.|+|+|..|+-.+.+. +.+-|..... .+..
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~  244 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS  244 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence            999999999642                  1223334445567899999999999999888887 7777766554 2333


Q ss_pred             eccCCcccEEEEEeCCCCeEEEEeC
Q 011457          380 MLSQQKTIINSMAVNEEGVLATGGD  404 (485)
Q Consensus       380 ~~~~~~~~i~~~~~~~~~~l~sg~~  404 (485)
                      ....+ -+..++.|-.+..++.++.
T Consensus       245 ~~~~~-lP~ls~~~ise~~vv~ag~  268 (361)
T KOG1523|consen  245 VATAQ-LPLLSVSWISENSVVAAGY  268 (361)
T ss_pred             hhhcc-CCceeeEeecCCceeecCC
Confidence            22222 4445555544433333333

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.4e-16  Score=159.91  Aligned_cols=248  Identities=17%  Similarity=0.355  Sum_probs=194.6

Q ss_pred             EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC---CEEEEEeCCCcEEEEECC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH---TYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~V~iwd~~  247 (485)
                      +.|-...-..-.|++|+++++.... ..|+||...++.++..+.+|..++..+.+.|..   .++++++.||.|++||..
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~   90 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS   90 (792)
T ss_pred             eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence            4454444455568999998887754 689999999999999999999999999998754   478899999999999987


Q ss_pred             CCeeEEEec-----------------------------------------------------------------------
Q 011457          248 QNKVIRSYH-----------------------------------------------------------------------  256 (485)
Q Consensus       248 ~~~~~~~~~-----------------------------------------------------------------------  256 (485)
                      .+.+++++.                                                                       
T Consensus        91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~  170 (792)
T KOG1963|consen   91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN  170 (792)
T ss_pred             CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence            655432211                                                                       


Q ss_pred             --------------------------------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCC----CceEEEeccC
Q 011457          257 --------------------------------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT----KMQIFALAGH  300 (485)
Q Consensus       257 --------------------------------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~  300 (485)
                                                      .|.-.++|.++||+++++++|..||.|.+|.--.    ......+.-|
T Consensus       171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH  250 (792)
T KOG1963|consen  171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH  250 (792)
T ss_pred             CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence                                            0445578999999999999999999999996432    2345667789


Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee
Q 011457          301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN  379 (485)
Q Consensus       301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~  379 (485)
                      ...|.++.|+++|.+|++|+..|.+.+|.+.+++ .+-+..-..+|..+.++||+.+.+....|+ |.+....+.+....
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t  329 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST  329 (792)
T ss_pred             ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence            9999999999999999999999999999999988 555666788999999999999888887777 88887755543332


Q ss_pred             e---cc-------CCcccEEEEEeCC-CCeEEEEeCCCcEEEEeCCCCcccc
Q 011457          380 M---LS-------QQKTIINSMAVNE-EGVLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       380 ~---~~-------~~~~~i~~~~~~~-~~~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      +   ..       ......+.+.++| .+.++-.+..|.|.+||+.+.+.+.
T Consensus       330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~  381 (792)
T KOG1963|consen  330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIY  381 (792)
T ss_pred             ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceee
Confidence            2   11       1244567778888 3477777888899999886655443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=2.9e-17  Score=164.36  Aligned_cols=263  Identities=17%  Similarity=0.178  Sum_probs=192.7

Q ss_pred             CeEEEEECCCC-ceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee--EE----EecccCCceEEEEEe
Q 011457          197 RTIKIWDVAKG-TLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKV--IR----SYHGHLSGVYCLGLH  268 (485)
Q Consensus       197 g~I~iwd~~~~-~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~--~~----~~~~h~~~v~~l~~~  268 (485)
                      +.+.||++... .....+. ....|+++.|+|.. .+++.|+.+|+|.+||+..+..  ..    ....|..+++.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47999999877 3444444 56899999999965 5677778999999999987654  22    225689999999998


Q ss_pred             cCCC--EEEEEECCCcEEEEECCCCceEE---Ee---c------cCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCC-
Q 011457          269 PTID--ILLTGGRDSVCRVWDIRTKMQIF---AL---A------GHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRY-  332 (485)
Q Consensus       269 ~~~~--~l~sg~~dg~i~iwd~~~~~~~~---~~---~------~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~-  332 (485)
                      .+..  -+++++.||.|..|+++.-....   .+   .      .....++++.|.+.. ..+++|+.+|.|.--+... 
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            7644  49999999999999987533210   00   1      123467889998854 5688999999988743322 


Q ss_pred             --Ce-----EEeEeccCCCceEEEEECCCCC-EEEEEcCCCEEEEECC-CCceeeeeccCCcccEEEEEeCCCC--eEEE
Q 011457          333 --GK-----TMLTLTHHKKSVRAMALHPTED-CFASASAENIKKFNLP-KGEFLHNMLSQQKTIINSMAVNEEG--VLAT  401 (485)
Q Consensus       333 --~~-----~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~--~l~s  401 (485)
                        ..     ....+..|.++|+++.++|-+. .|.++++..+++|... ....+.. ...+...+.+++|+|..  ++++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~-~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS-LDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh-hhhccceeeeeEEcCcCceEEEE
Confidence              21     2335566888999999999765 5556666679999987 4444444 34555669999999998  8999


Q ss_pred             EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       402 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      +..||.|.+||+.....-......      -.....+.+.|++.|+.|++|...|++.+|++.+.-
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l  519 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQK------VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL  519 (555)
T ss_pred             EcCCCceehhhhhccccCCccccc------ccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence            999999999999754332221110      124557788899999999999999999999997543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=9.9e-18  Score=158.90  Aligned_cols=263  Identities=16%  Similarity=0.201  Sum_probs=196.2

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEE-EEEcC-------CCCEEEEEeCCCcEEEE
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG-LAVSS-------KHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~-l~~s~-------~~~~l~s~~~dg~V~iw  244 (485)
                      .|...|.|+.|+.+...+.+++.+..++-||+.+. ....+.-....|.. +..-+       ....|+.++.||.+.|.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            46667789999877776666654444444454332 22222211111111 11111       23468888999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                      + ..++.-+....|.+.+.|-.|+|+|.-|++++.||.|++|. ++|....++......|.|++|.|+.+.++-+ ..+.
T Consensus        91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h  167 (737)
T KOG1524|consen   91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGH  167 (737)
T ss_pred             c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe-cCCe
Confidence            7 56788888899999999999999999999999999999998 4565555565677899999999988776654 3467


Q ss_pred             EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457          325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG  403 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~  403 (485)
                      +.|=.+.....+...+.|.+-|.++.|++...++++++.|- .++||-. |..+.+ ...|+.+|++++|+|+..++.|+
T Consensus       168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~-S~~~ey~ITSva~npd~~~~v~S  245 (737)
T KOG1524|consen  168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFT-SAAEEYAITSVAFNPEKDYLLWS  245 (737)
T ss_pred             EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccccc-CChhccceeeeeeccccceeeee
Confidence            88878888888888999999999999999999999999997 9999964 444444 36788999999999997666665


Q ss_pred             CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      .+ .+++=.                   ...+.|..++||+||..+++|+..|.+.+=
T Consensus       246 ~n-t~R~~~-------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  246 YN-TARFSS-------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ee-eeeecC-------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            43 444211                   235679999999999999999999987653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=7.3e-17  Score=142.37  Aligned_cols=278  Identities=13%  Similarity=0.243  Sum_probs=197.3

Q ss_pred             eEEEEEcc---CCCEEEEEeC----CCeEEEEECC--CCceEEEE-cccccCEEEEEEcCCC-----CEEEEEeCCCcEE
Q 011457          178 VRSVAFDH---SNTWFCTGSA----DRTIKIWDVA--KGTLKLTL-TGHIEQVRGLAVSSKH-----TYMFSAGDDKQVK  242 (485)
Q Consensus       178 V~~l~~sp---~~~~l~tgs~----dg~I~iwd~~--~~~~~~~~-~~h~~~V~~l~~s~~~-----~~l~s~~~dg~V~  242 (485)
                      +.++.|+.   .+.+||.|+.    .+.|.|-.+.  +++.+..- ..|.-+++.+.|.|+.     .+|++++  -.+|
T Consensus        47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LR  124 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLR  124 (364)
T ss_pred             eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEE
Confidence            45666763   3447888874    3567666553  34433221 2488999999999976     3455553  4799


Q ss_pred             EEECCC--CeeE--EEe-----cccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEE
Q 011457          243 CWDLEQ--NKVI--RSY-----HGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFT  309 (485)
Q Consensus       243 iwd~~~--~~~~--~~~-----~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~  309 (485)
                      +|.+..  .+..  ..+     ..+..+++++.|+. +.++|.+++-|-+..|||++++..   ...+-.|...|..++|
T Consensus       125 lWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf  204 (364)
T KOG0290|consen  125 LWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF  204 (364)
T ss_pred             EEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe
Confidence            998863  2211  111     23667899999987 567999999999999999998733   5567789999999999


Q ss_pred             cCCC-CEEEEEeCCCCEEEEECCCCeEEeEe---ccCCCceEEEEECCCC-CEEEEEcCCC--EEEEECCCCceeeeecc
Q 011457          310 RPTD-PQVVTGSHDSTIKFWDLRYGKTMLTL---THHKKSVRAMALHPTE-DCFASASAEN--IKKFNLPKGEFLHNMLS  382 (485)
Q Consensus       310 ~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~~p~~-~~l~~~~~~~--i~i~d~~~~~~~~~~~~  382 (485)
                      ...+ ..|++.+.||.+|+||++..+--..+   .....+...++|++.. +++++-..+.  |.+.|++.......-+.
T Consensus       205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~  284 (364)
T KOG0290|consen  205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR  284 (364)
T ss_pred             ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh
Confidence            9854 47889999999999999976543322   2224578889998865 4666655554  99999988766666678


Q ss_pred             CCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEECCCcEE
Q 011457          383 QQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCEADKTIK  459 (485)
Q Consensus       383 ~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~~Dg~I~  459 (485)
                      .|.+.|+.++|.|..  .|+++++|..+.+||+.+.-.......+   .....++.|+.+.|++ .+..|+.+. ++.+.
T Consensus       285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi---lay~a~~EVNqi~Ws~~~~Dwiai~~-~kkle  360 (364)
T KOG0290|consen  285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI---LAYTAGGEVNQIQWSSSQPDWIAICF-GKKLE  360 (364)
T ss_pred             cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch---hhhhccceeeeeeecccCCCEEEEEe-cCeee
Confidence            999999999999987  9999999999999999764321111111   1123567899999996 455666654 45555


Q ss_pred             Ee
Q 011457          460 MW  461 (485)
Q Consensus       460 iW  461 (485)
                      |.
T Consensus       361 iL  362 (364)
T KOG0290|consen  361 IL  362 (364)
T ss_pred             EE
Confidence            54

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=4.4e-18  Score=161.29  Aligned_cols=209  Identities=16%  Similarity=0.250  Sum_probs=176.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG  266 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~  266 (485)
                      .+.|+.++.||.+.|.+ ..++....+..|.+.|.+-.|+|+|.-|+++++||.|++|. ++|-+-.++.....+|+|++
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence            45788899999999988 67888888999999999999999999999999999999998 45655555556778999999


Q ss_pred             EecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCce
Q 011457          267 LHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV  346 (485)
Q Consensus       267 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v  346 (485)
                      |.|+.+.++.+. .+.+.|=-+.....+...+.|.+-|.++.|++..+.+++|+.|-..++||. .|..+..-..|..+|
T Consensus       153 W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  153 WAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI  230 (737)
T ss_pred             ECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence            999977655543 356777777777778888999999999999999999999999999999995 488888888899999


Q ss_pred             EEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          347 RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       347 ~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      ++++|.|+ ..++.++.+.++            +.....+.|..++|++|| .+++|+..|.+.+=.
T Consensus       231 TSva~npd-~~~~v~S~nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYNTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             eeeeeccc-cceeeeeeeeee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence            99999999 677766655544            334556778999999999 999999999877643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.8e-18  Score=153.01  Aligned_cols=267  Identities=18%  Similarity=0.274  Sum_probs=190.9

Q ss_pred             ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEEeCCCeEEEEECCCCceEEEE--cccc-
Q 011457          143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTGSADRTIKIWDVAKGTLKLTL--TGHI-  217 (485)
Q Consensus       143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~h~-  217 (485)
                      +++.+.....++++++.    ..+.+..+++|...++.+.|..  ....+.+|+.||+|++||+.+......+  ..+. 
T Consensus        42 ~vav~lSngsv~lyd~~----tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKG----TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             eEEEEecCCeEEEEecc----chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence            34444455556665442    2677889999999999999976  4678999999999999999877655443  4444 


Q ss_pred             cCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCee-EEEe-cccCCceEEEEEecC-CCEEEEEECCCcEEEEECCC
Q 011457          218 EQVRGLAVSSKHTYMFSAG----DDKQVKCWDLEQNKV-IRSY-HGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRT  290 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~----~dg~V~iwd~~~~~~-~~~~-~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~  290 (485)
                      .+..+++.+.+++.+++|.    .|-.|.+||++..+. ++.+ ..|...|+++.|+|. .++|++|+.||-|.+||++.
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            4667777777888888875    467899999988766 6655 579999999999995 67999999999999999975


Q ss_pred             Cce---EEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEeEeccCCC------------ceEEEEECCC
Q 011457          291 KMQ---IFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK------------SVRAMALHPT  354 (485)
Q Consensus       291 ~~~---~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------~v~~l~~~p~  354 (485)
                      ...   +...-.|...|.++.|..++ +.+.+-+..++..+|+++.+.+...+....-            -+.......+
T Consensus       198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~  277 (376)
T KOG1188|consen  198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD  277 (376)
T ss_pred             CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence            422   22223477889999998765 5688889999999999998876555433211            1111112223


Q ss_pred             CCEEEEEcC--CCEEEE---ECCCC---ceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          355 EDCFASASA--ENIKKF---NLPKG---EFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       355 ~~~l~~~~~--~~i~i~---d~~~~---~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      ...++.++.  +...++   +..++   +.+..+..++...|..+.|.-.+ ++.+|+.||.+.+|..
T Consensus       278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            444444433  223333   22333   33444555677888888888766 9999999999999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.3e-16  Score=137.42  Aligned_cols=234  Identities=18%  Similarity=0.317  Sum_probs=166.6

Q ss_pred             eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce------EEE--Eccc-----ccCEEEEEEcCCCCEEE
Q 011457          167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL------KLT--LTGH-----IEQVRGLAVSSKHTYMF  233 (485)
Q Consensus       167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~------~~~--~~~h-----~~~V~~l~~s~~~~~l~  233 (485)
                      .+-..++|.++|..++|.  ..+|++|+ ||.|+=|.......      ...  ..-|     --.|+++...|..+-++
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            344558999999999998  56677775 59999998754322      000  1112     24689999999888888


Q ss_pred             EEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC----------cc
Q 011457          234 SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD----------NT  303 (485)
Q Consensus       234 s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----------~~  303 (485)
                      .++.|+.++.||+++|+..+.+++|.+.|.++.--.....+++|+.||++++||+++++++..+....          ..
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w  210 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW  210 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence            88899999999999999999999999999999986656679999999999999999999988775321          23


Q ss_pred             EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc
Q 011457          304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS  382 (485)
Q Consensus       304 v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~  382 (485)
                      |-+++.  +..++++|+ ...+.+|.++..++...+.. ...+..+.|.  ...+++++.++ +..|.+. |..... ..
T Consensus       211 igala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~-ip  282 (325)
T KOG0649|consen  211 IGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQAN-IP  282 (325)
T ss_pred             eEEEec--cCceEEecC-CCceeEEeccCCCceEEEec-ccceeEeeee--cceEEEeccccceeeeeec-cEEEEe-cc
Confidence            555555  455777765 46799999999988877754 4557777775  44566666554 8888763 322222 23


Q ss_pred             CCcccEEEEEeC--CCCeEEEEeCCCcEEEE
Q 011457          383 QQKTIINSMAVN--EEGVLATGGDNGSLWFW  411 (485)
Q Consensus       383 ~~~~~i~~~~~~--~~~~l~sg~~dg~I~iw  411 (485)
                      .......+..++  |-.+|-.++....+.++
T Consensus       283 ~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  283 VESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CCccceeeecccCCceEEEEecccceeeeee
Confidence            333334444443  33355566666677665

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=3.3e-18  Score=159.65  Aligned_cols=272  Identities=14%  Similarity=0.220  Sum_probs=224.9

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc
Q 011457          179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH  258 (485)
Q Consensus       179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h  258 (485)
                      ..+.|+.+|..|+.|+.-|.|-.+|..++++...+. -...|.++.|-.+.+++|++ ....+.|||- .|..+..++.|
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~~  209 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKRH  209 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhhc
Confidence            458899999999999999999999999999988887 45789999999999988887 5578999994 57788888754


Q ss_pred             CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE
Q 011457          259 LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT  338 (485)
Q Consensus       259 ~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~  338 (485)
                       ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-+..+-+|..+|+|.+|.....+++..
T Consensus       210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK  288 (545)
T KOG1272|consen  210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK  288 (545)
T ss_pred             -CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence             6789999999988999999999999999999999999988888999999999888999999999999999999999999


Q ss_pred             eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC-CCC
Q 011457          339 LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW-KSG  416 (485)
Q Consensus       339 ~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~-~~~  416 (485)
                      +..|.++|++|++.++|.++++++.|. ++|||+++-..+..+..  ......+++|..|+|+.+-.+ .|.||.= -.+
T Consensus       289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~SqkglLA~~~G~-~v~iw~d~~~~  365 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGLLALSYGD-HVQIWKDALKG  365 (545)
T ss_pred             HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCccccccccccceeeecCC-eeeeehhhhcC
Confidence            999999999999999999999999887 99999999887776644  456778899999888777655 8899942 222


Q ss_pred             cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          417 HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      ..-.......    ......|..+.|.|-...|-.|..-|.-.|-
T Consensus       366 s~~~~~pYm~----H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  366 SGHGETPYMN----HRCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             CCCCCcchhh----hccCcccccceeccHHHeeeccccCCceeEe
Confidence            1111111110    1123479999999988888877776644443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.7e-16  Score=147.14  Aligned_cols=202  Identities=19%  Similarity=0.243  Sum_probs=159.6

Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC
Q 011457          263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH  342 (485)
Q Consensus       263 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  342 (485)
                      .+++|+.+|..|++|+.||++|||+..+...+.....|...|.++.|+||+++|++-+.| ..+||+.+++..+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999988888888888899999999999999999999999 9999999999776665532


Q ss_pred             --CCceEEEEECCCC---CEEEEEc--CCC-EEEEECCCCce---eee-eccCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457          343 --KKSVRAMALHPTE---DCFASAS--AEN-IKKFNLPKGEF---LHN-MLSQQKTIINSMAVNEEG-VLATGGDNGSLW  409 (485)
Q Consensus       343 --~~~v~~l~~~p~~---~~l~~~~--~~~-i~i~d~~~~~~---~~~-~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~  409 (485)
                        ...+..+.|+.++   .+++.+.  ..+ +..|++....-   +.. ........|++++++++| +++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence              2356677888777   3333333  222 66666543222   111 112234579999999999 999999999999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH  472 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~  472 (485)
                      |++..+.+.++..+.       .|...|+.+.|+|+.+++++.+.|..+.|..+.-+.....+
T Consensus       307 i~~~~~lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~~  362 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQLH  362 (398)
T ss_pred             EEEeceeeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeEEEEeeccccccc
Confidence            999988776655543       57889999999999999999999999999998775544433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=4e-17  Score=145.95  Aligned_cols=232  Identities=18%  Similarity=0.190  Sum_probs=178.7

Q ss_pred             cceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC-CCC-
Q 011457          130 SAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV-AKG-  207 (485)
Q Consensus       130 ~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~-~~~-  207 (485)
                      ..|.+.++++++..++.+.....+.++.... ..+|+..++|+.|...|++|+|+|..+.|++|+.|+.-+||.. ..+ 
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~-~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLG-ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecC-CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            4566677788887777766555555554433 3458999999999999999999999999999999999999998 433 


Q ss_pred             -ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---E-EecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          208 -TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI---R-SYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       208 -~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~---~-~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                       +....+..++...+++.|+|.++.|++|+....|.||-++...--   + .-+.+.+.|.+++|+|++-+|++|+.|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence             344556679999999999999999999999999999988754321   1 22457889999999999999999999999


Q ss_pred             EEEEECC-----C-------------CceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-EEeEeccCC
Q 011457          283 CRVWDIR-----T-------------KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-TMLTLTHHK  343 (485)
Q Consensus       283 i~iwd~~-----~-------------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~  343 (485)
                      ++|+..-     +             |+....+....+.+..+.|+|+|..|+-.+.|+++.+-|..... .+.......
T Consensus       170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~  249 (361)
T KOG1523|consen  170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ  249 (361)
T ss_pred             eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc
Confidence            9999742     1             12233333456789999999999999999999999999987654 344444444


Q ss_pred             CceEEEEECCCCCEEEEEc
Q 011457          344 KSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       344 ~~v~~l~~~p~~~~l~~~~  362 (485)
                      -+.+++.|-.+...++++.
T Consensus       250 lP~ls~~~ise~~vv~ag~  268 (361)
T KOG1523|consen  250 LPLLSVSWISENSVVAAGY  268 (361)
T ss_pred             CCceeeEeecCCceeecCC
Confidence            6777777765554444443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1e-16  Score=146.56  Aligned_cols=287  Identities=16%  Similarity=0.214  Sum_probs=216.7

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCC--CCcceEEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH--APWKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIW  202 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~--~~~~~~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw  202 (485)
                      -+|.++|.++.|+..+..+++++.|.-..+|+.....  ...|++.... .|...|.|++|.-.+.++++|+.+++|...
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            3688999999999999999999999999999865531  2235555554 466899999999999999999999999999


Q ss_pred             ECCCCceEEEEcc--cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEE--EecccCCceEEEEEecC-CCEEEE
Q 011457          203 DVAKGTLKLTLTG--HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIR--SYHGHLSGVYCLGLHPT-IDILLT  276 (485)
Q Consensus       203 d~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~--~~~~h~~~v~~l~~~~~-~~~l~s  276 (485)
                      |+++.+.+..+..  ..+.|..+..+|..+.|++.+.+|.|.+||.+... .+.  .+.......+.+.|+|. ..+|++
T Consensus       133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~  212 (609)
T KOG4227|consen  133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV  212 (609)
T ss_pred             ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence            9999988877652  23489999999999999999999999999997654 221  12224456788899996 458888


Q ss_pred             EECCCcEEEEECCCCce-EEEe---ccC---CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-EeEeccCC-----
Q 011457          277 GGRDSVCRVWDIRTKMQ-IFAL---AGH---DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-MLTLTHHK-----  343 (485)
Q Consensus       277 g~~dg~i~iwd~~~~~~-~~~~---~~~---~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~-----  343 (485)
                      .+..+-+.+||.+.... +...   .+.   ...-.++.|+|+|++|++--....-.+||+-+.++ +..+....     
T Consensus       213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N  292 (609)
T KOG4227|consen  213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCN  292 (609)
T ss_pred             ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCccee
Confidence            89999999999985432 2211   111   22336788999999999877777778889877554 33333222     


Q ss_pred             -CceEEEEECCCCCEEEEEcCC-CEEEEECCCCce----------------------eeeeccCCcccEEEEEeCCCC-e
Q 011457          344 -KSVRAMALHPTEDCFASASAE-NIKKFNLPKGEF----------------------LHNMLSQQKTIINSMAVNEEG-V  398 (485)
Q Consensus       344 -~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~----------------------~~~~~~~~~~~i~~~~~~~~~-~  398 (485)
                       ..+.+++|..+.. +++|+++ +|++|.++....                      ...++.+|...++.+.|++.. +
T Consensus       293 ~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~  371 (609)
T KOG4227|consen  293 IKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL  371 (609)
T ss_pred             eeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence             2577788876555 7777777 499999853211                      112356888999999999988 7


Q ss_pred             EEEEeCCCcEEEEeC
Q 011457          399 LATGGDNGSLWFWDW  413 (485)
Q Consensus       399 l~sg~~dg~I~iwd~  413 (485)
                      |++.+-...+++|.-
T Consensus       372 l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  372 LVSSGVENSFKLWSD  386 (609)
T ss_pred             Eeccchhhheecccc
Confidence            788888899999963

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=1.8e-15  Score=147.28  Aligned_cols=259  Identities=13%  Similarity=0.223  Sum_probs=173.1

Q ss_pred             ccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEe-CCCeEEEEECC-CCce--EEEEcccccCEEEEE
Q 011457          149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVA-KGTL--KLTLTGHIEQVRGLA  224 (485)
Q Consensus       149 ~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~-~~~~--~~~~~~h~~~V~~l~  224 (485)
                      .++.+..|.... ....+.+..+. +.+....++++|++++|++++ .++.|.+|++. +++.  ..... .......++
T Consensus        10 ~~~~I~~~~~~~-~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~   86 (330)
T PRK11028         10 ESQQIHVWNLNH-EGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS   86 (330)
T ss_pred             CCCCEEEEEECC-CCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence            345555665521 12344555554 346678899999999887665 47889999986 3433  22222 234567899


Q ss_pred             EcCCCCEEEEEeC-CCcEEEEECCCC----eeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEE---
Q 011457          225 VSSKHTYMFSAGD-DKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIF---  295 (485)
Q Consensus       225 ~s~~~~~l~s~~~-dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~---  295 (485)
                      |+|++++|++++. ++.|.+|++++.    +.+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.   
T Consensus        87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            9999999888764 889999999743    2233333 334567889999999886555 56999999998643221   


Q ss_pred             ----EeccCCccEEEEEEcCCCCEEEEEeC-CCCEEEEECCC--C--eEEeEeccC------CCceEEEEECCCCCEEEE
Q 011457          296 ----ALAGHDNTVCSVFTRPTDPQVVTGSH-DSTIKFWDLRY--G--KTMLTLTHH------KKSVRAMALHPTEDCFAS  360 (485)
Q Consensus       296 ----~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~I~iwd~~~--~--~~~~~~~~~------~~~v~~l~~~p~~~~l~~  360 (485)
                          ... .......+.|+|++++++++.. ++.|.+||+..  +  +.+..+...      ......+.++|+++++++
T Consensus       166 ~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv  244 (330)
T PRK11028        166 PAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA  244 (330)
T ss_pred             CCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence                111 2344678999999999988876 89999999973  2  223333221      112346889999999888


Q ss_pred             EcCC--CEEEEECCCCce----eeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeCC
Q 011457          361 ASAE--NIKKFNLPKGEF----LHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDWK  414 (485)
Q Consensus       361 ~~~~--~i~i~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~  414 (485)
                      +...  .|.+|++.....    +.....  ......+.++++| +|+++. .++.|.+|++.
T Consensus       245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        245 CDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            8653  399999864432    222211  1244578999999 666655 48999999875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.6e-16  Score=159.55  Aligned_cols=231  Identities=11%  Similarity=0.102  Sum_probs=165.1

Q ss_pred             CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCee--EEEecccCCceEEEEEecC
Q 011457          196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKV--IRSYHGHLSGVYCLGLHPT  270 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~  270 (485)
                      +..|.+||..... ...+..|...+...+|+|+|+.|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            4789999986544 55677788889999999999999887654   4799999988753  3334433   346899999


Q ss_pred             CCEEEEEE-CCCcEEEE--ECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCC-eEEeEeccCCCc
Q 011457          271 IDILLTGG-RDSVCRVW--DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYG-KTMLTLTHHKKS  345 (485)
Q Consensus       271 ~~~l~sg~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~-~~~~~~~~~~~~  345 (485)
                      |+.|+.++ .+|.+.||  |+.++. ...+..+...+....|+|+++.|+..+ .+|...||++... .....+ .+.. 
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence            99888764 68866555  665554 455666777788999999999877555 5788888876532 222222 2332 


Q ss_pred             eEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC--CCcccccc
Q 011457          346 VRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK--SGHNFQQA  422 (485)
Q Consensus       346 v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~--~~~~~~~~  422 (485)
                       ....|+|+|++++..+.+.+.+||+.+++..... ...  ......|+|+| +|+.++.+|.+.+|++.  +|.....+
T Consensus       336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLS-STF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEec-CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence             4578999999999888888888999888754321 221  23467899999 88888889988888763  45544444


Q ss_pred             eeeeccCCCCCCccEEEEEEccC
Q 011457          423 QTIVQPGSLDSEAGIYALSYDVT  445 (485)
Q Consensus       423 ~~~~~~~~~~~~~~V~~l~~s~~  445 (485)
                      .        .+.+.+...+|+|-
T Consensus       412 ~--------~~~g~~~~p~wsp~  426 (429)
T PRK01742        412 P--------GSDGQVKFPAWSPY  426 (429)
T ss_pred             c--------CCCCCCCCcccCCC
Confidence            2        24556777888874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=1.8e-15  Score=138.00  Aligned_cols=237  Identities=14%  Similarity=0.205  Sum_probs=183.0

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--cEEEEECCCCceE
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--VCRVWDIRTKMQI  294 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~  294 (485)
                      ...+..+.|+.+...|..|+.|| -++|+.+..............|..+-|+.  .+++..+.+.  .+++++++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            34567777999988899999988 67888765544222222233455555554  4666665544  4999999988888


Q ss_pred             EEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---CCCceEEEEECCCCCEEEEEcCC---CEEE
Q 011457          295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---HKKSVRAMALHPTEDCFASASAE---NIKK  368 (485)
Q Consensus       295 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~~~p~~~~l~~~~~~---~i~i  368 (485)
                      ..+. ....|.++.++.  +.|+++-.+. |+|||+++.+.+.++..   +...+.++.+++.+.+++.-+..   .|.+
T Consensus        82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            8776 567899998864  4666666544 99999999999887754   34457777777777788865443   3999


Q ss_pred             EECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCc-EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC
Q 011457          369 FNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGS-LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG  446 (485)
Q Consensus       369 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  446 (485)
                      ||..+-+....+ ..|++.+.+++|+++| +|+++++.|+ |+||.+.+|+.+.++..-.      ....|.+++|++++
T Consensus       158 ~d~~nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~------~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  158 FDTINLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT------YPVSIYSLSFSPDS  230 (391)
T ss_pred             EEcccceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc------eeeEEEEEEECCCC
Confidence            999998888776 5899999999999999 9999999986 7899999999988876422      14569999999999


Q ss_pred             CEEEEEECCCcEEEecCCCCC
Q 011457          447 SRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       447 ~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ++|++.+..++|.||+++...
T Consensus       231 ~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  231 QFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CeEEEecCCCeEEEEEecccc
Confidence            999999999999999998765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.74  E-value=4.4e-16  Score=155.98  Aligned_cols=259  Identities=18%  Similarity=0.251  Sum_probs=189.6

Q ss_pred             CCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCce--EEE----EcccccCEEEEE
Q 011457          152 IPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTL--KLT----LTGHIEQVRGLA  224 (485)
Q Consensus       152 ~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~--~~~----~~~h~~~V~~l~  224 (485)
                      .+.+|+....   ..+-..+ .-...|+|+.|+| +..++|.|..+|.|.+||+..+..  ...    ...|..++..+.
T Consensus       223 ~~~vW~~~~p---~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  223 VLLVWSLKNP---NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             eEEEEecCCC---CCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence            4556765432   3333333 2467899999999 667888899999999999987765  222    345889999999


Q ss_pred             EcCCCCE--EEEEeCCCcEEEEECCCCeeE------EEec------ccCCceEEEEEecC-CCEEEEEECCCcEEEEEC-
Q 011457          225 VSSKHTY--MFSAGDDKQVKCWDLEQNKVI------RSYH------GHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDI-  288 (485)
Q Consensus       225 ~s~~~~~--l~s~~~dg~V~iwd~~~~~~~------~~~~------~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~-  288 (485)
                      |..+..-  |++++.||.|..|+++.-...      ....      .....++++.|.+. .+.+++|+.+|.|.--+- 
T Consensus       299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence            9865444  999999999999987643221      0111      12346889999985 568999999999877332 


Q ss_pred             --CCCc-----eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeEEeEeccCCCceEEEEECCCCC-EEE
Q 011457          289 --RTKM-----QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTED-CFA  359 (485)
Q Consensus       289 --~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~-~l~  359 (485)
                        +...     ....+..|.+.|.++.++|-+..++..+.|.+++||... ...++..+..+...|.+++|||... .|+
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence              2222     123455688999999999988777666669999999988 6777878877788899999999876 555


Q ss_pred             EEcCCC-EEEEECCCCc--eeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          360 SASAEN-IKKFNLPKGE--FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       360 ~~~~~~-i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      ++..++ +.+||+....  .+... .......+.+.+++.| .|++|...|.+++|++..
T Consensus       459 ~~d~~G~l~iWDLl~~~~~Pv~s~-~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDEEPVLSQ-KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEcCCCceehhhhhccccCCcccc-cccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            555455 9999996543  23332 2225677888899988 999999999999999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=6.1e-18  Score=167.80  Aligned_cols=277  Identities=21%  Similarity=0.320  Sum_probs=221.8

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      -+|.++|.+..++..+..+.|++.|..+++|...    .-.+...+.||.+.|+.++.+.++.++++++.|..|++|.+.
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e----t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME----TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeecc----chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            4899999999999999999999999999999853    467788899999999999999999999999999999999999


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe----c-ccCCceEEEEEecCCCEEEEEECC
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY----H-GHLSGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~----~-~h~~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      ++.++..+.+|.+.|++++|+|..    +.+.||++++||.+ ...+...    . .....+.++.|..++.-+++|+.|
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            999999999999999999999965    77899999999987 1111111    0 123457778888888899999999


Q ss_pred             CcEEEEECCCCceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      +.-..|.+..-.      .+...+.-+..+.+ ..+.+++-.+..+.+|++.+|.....+.+|...+..+.++|-+..++
T Consensus       338 ~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  338 GEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             cccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence            999888765321      12222222222111 24667777788999999999999999999999999999999877555


Q ss_pred             -EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457          360 -SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       360 -~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~  418 (485)
                       +++.|+ ..+||+-.|..++....+ ...+....|+++| .++...+-|.++|.....++.
T Consensus       412 msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence             455555 999999999988877655 5566677899999 777777889999997765544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=6.8e-17  Score=149.72  Aligned_cols=193  Identities=17%  Similarity=0.244  Sum_probs=155.4

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec--
Q 011457          179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH--  256 (485)
Q Consensus       179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~--  256 (485)
                      .+++|+.+|..|++|+.||++|||+..+...+.....|...|.++.|+||+++|++.+.| ..+||+.+++..+....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999999998888888999999999999999999999999 89999999997776654  


Q ss_pred             ccCCceEEEEEecCC---C--EEEEEECCCcEEEEECCCCce-----EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457          257 GHLSGVYCLGLHPTI---D--ILLTGGRDSVCRVWDIRTKMQ-----IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK  326 (485)
Q Consensus       257 ~h~~~v~~l~~~~~~---~--~l~sg~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~  326 (485)
                      .-......+.|+.++   .  +++.-..-+.|+.||+....-     ..........|+++..+++|++++.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            233446677888776   2  333334456777777654332     111222345899999999999999999999999


Q ss_pred             EEECCCCeEEeEe-ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457          327 FWDLRYGKTMLTL-THHKKSVRAMALHPTEDCFASASAEN-IKKFNLP  372 (485)
Q Consensus       327 iwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~  372 (485)
                      |++..+.+.++.. ..|...|+.+.|+|+.+++++.+.+. ..+..+.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999988877655 45888999999999999998877665 5555543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=2.4e-14  Score=128.37  Aligned_cols=284  Identities=15%  Similarity=0.250  Sum_probs=197.9

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCC------CcEEEEECCCCe
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD------KQVKCWDLEQNK  250 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~d------g~V~iwd~~~~~  250 (485)
                      ..+++|+.|...+++|..+| .+||+++-.+....-..+.+.+.-+..--..++|+ +||.+      +.|.|||=...+
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            34499999999999997766 99999876444333222222221111112345555 44433      589999977788


Q ss_pred             eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC-CCceEEEecc--CCccEEEEEEcCCCCEEEE-EeCCCCEE
Q 011457          251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIFALAG--HDNTVCSVFTRPTDPQVVT-GSHDSTIK  326 (485)
Q Consensus       251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s-~s~dg~I~  326 (485)
                      ++.++. ...+|.++.+.++  .|++. .++.|.||... +.+.++.+..  .....++++-..+...|+. |-.-|.|+
T Consensus        87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence            888887 7789999999876  45544 46789999987 4555555542  2334555554444444443 44568999


Q ss_pred             EEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCC-cccEEEEEeCCCC-eEE
Q 011457          327 FWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEG-VLA  400 (485)
Q Consensus       327 iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~  400 (485)
                      |-|+...+.  ...+..|...|.+++++-+|..+|+++..+  |++||..+|+.++++..+. ...|.+++|+|+. +|+
T Consensus       163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~La  242 (346)
T KOG2111|consen  163 IVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLA  242 (346)
T ss_pred             EEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEE
Confidence            999987665  577889999999999999999999999998  9999999999999986654 4679999999999 999


Q ss_pred             EEeCCCcEEEEeCCCCccccc----c--eeeeccCCCC----------CCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          401 TGGDNGSLWFWDWKSGHNFQQ----A--QTIVQPGSLD----------SEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       401 sg~~dg~I~iwd~~~~~~~~~----~--~~~~~~~~~~----------~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      +.++.|+++||.++....-..    +  .....+..++          ..+....++|-.+-+.++..+.||+-+=+.+.
T Consensus       243 vsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~  322 (346)
T KOG2111|consen  243 VSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD  322 (346)
T ss_pred             EEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence            999999999999876432222    0  0000111111          13345567777776777788889987766665


Q ss_pred             CC
Q 011457          465 ET  466 (485)
Q Consensus       465 ~~  466 (485)
                      ..
T Consensus       323 ~~  324 (346)
T KOG2111|consen  323 PK  324 (346)
T ss_pred             cc
Confidence            44

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.73  E-value=1.7e-15  Score=135.92  Aligned_cols=307  Identities=15%  Similarity=0.153  Sum_probs=211.8

Q ss_pred             ecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEE
Q 011457          134 STSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTG-SADRTIKIWDVAKGTLKLT  212 (485)
Q Consensus       134 ~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tg-s~dg~I~iwd~~~~~~~~~  212 (485)
                      -+++||+|+.+|+...-+.+..=     ...++..+.+ ---+.|.-|.|.-|..+++.+ ..|+.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd-----~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRD-----SETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEec-----cchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence            45689999998887644332210     0111111111 113678889999887765554 5678999999998888888


Q ss_pred             EcccccCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-----------
Q 011457          213 LTGHIEQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD-----------  280 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d-----------  280 (485)
                      +......+..++|+|+|+. |.+...|-.|.+|.+.+.+....-. ....+..++|+|||++.+..++-           
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            9888899999999999954 5567789999999998876654332 33456889999999987776552           


Q ss_pred             -------------------------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          281 -------------------------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       281 -------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                                               ..+.+||.--.-.+.... -.-.+..+.|+|.+++|++|+.|+.+|+.+--+.+.
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                     223444432222222221 235788999999999999999999998865321100


Q ss_pred             ------------------------------------------------------------EeE------eccCCCceEEE
Q 011457          336 ------------------------------------------------------------MLT------LTHHKKSVRAM  349 (485)
Q Consensus       336 ------------------------------------------------------------~~~------~~~~~~~v~~l  349 (485)
                                                                                  +..      +......+.-+
T Consensus       245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l  324 (447)
T KOG4497|consen  245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL  324 (447)
T ss_pred             hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence                                                                        001      11123356779


Q ss_pred             EECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceee
Q 011457          350 ALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTI  425 (485)
Q Consensus       350 ~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~  425 (485)
                      +|++|..++++-.+.-   +.+||+.+.+....+  .....|....|.|.. .|+.+.....+++|.......+...   
T Consensus       325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL--iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP---  399 (447)
T KOG4497|consen  325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL--IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP---  399 (447)
T ss_pred             eecCCceEEeeecCCCCceEEEEechhhhhhhhh--hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC---
Confidence            9999999999888764   999999877654433  345679999999998 7777777778999986543222211   


Q ss_pred             eccCCCCCCccEEEEEEccCCCEEEEEECCCcEE
Q 011457          426 VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK  459 (485)
Q Consensus       426 ~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~  459 (485)
                            ...-.|..++|..+|..++-.+.|....
T Consensus       400 ------~~GF~i~~l~W~~~g~~i~l~~kDafc~  427 (447)
T KOG4497|consen  400 ------KKGFNIQKLQWLQPGEFIVLCGKDAFCV  427 (447)
T ss_pred             ------CCCceeeeEEecCCCcEEEEEcCCceEE
Confidence                  2346799999999999999999987543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=6.7e-16  Score=136.35  Aligned_cols=235  Identities=16%  Similarity=0.205  Sum_probs=173.4

Q ss_pred             cCCcceEEEEEccCC-----CEEEEEeCCCeEEEEECCCCceE----EEE-----cccccCEEEEEEcC-CCCEEEEEeC
Q 011457          173 GHLGWVRSVAFDHSN-----TWFCTGSADRTIKIWDVAKGTLK----LTL-----TGHIEQVRGLAVSS-KHTYMFSAGD  237 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~-----~~l~tgs~dg~I~iwd~~~~~~~----~~~-----~~h~~~V~~l~~s~-~~~~l~s~~~  237 (485)
                      .|.-+++.+-|.|+.     ++|||++  ..+|+|.+...+..    ..+     ..+..++++..|+. +-++|.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            588889999999976     3677765  37999998742211    111     23567899999986 5578899999


Q ss_pred             CCcEEEEECCCCe---eEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEec---cCCccEEEEEEc
Q 011457          238 DKQVKCWDLEQNK---VIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALA---GHDNTVCSVFTR  310 (485)
Q Consensus       238 dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~~  310 (485)
                      |-+..|||++++.   +...+-.|...|+.++|...+ +.+++.|.||.|++||++..+....+.   ....+...++|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            9999999999873   345567899999999999854 489999999999999999876543332   224577888998


Q ss_pred             CCCC-EEEEEeCC-CCEEEEECCC-CeEEeEeccCCCceEEEEECCCC-CEEEEEcCCC-EEEEECCCCce--e--eeec
Q 011457          311 PTDP-QVVTGSHD-STIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTE-DCFASASAEN-IKKFNLPKGEF--L--HNML  381 (485)
Q Consensus       311 ~~~~-~l~s~s~d-g~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d~~~~~~--~--~~~~  381 (485)
                      +.+. ++++-..| ..|.|.|++. ..++..+.+|...|+.++|.|.. ..++++++|. ..+||+...-.  .  ..+.
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila  331 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA  331 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence            8654 55655444 4699999997 45688999999999999999974 5888888887 99999965322  0  0011


Q ss_pred             cCCcccEEEEEeCCCC--eEEEEeCCCcEEE
Q 011457          382 SQQKTIINSMAVNEEG--VLATGGDNGSLWF  410 (485)
Q Consensus       382 ~~~~~~i~~~~~~~~~--~l~sg~~dg~I~i  410 (485)
                      -...+.|+.+.|++..  .++++.. .++.+
T Consensus       332 y~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  332 YTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             hhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            1245679999999765  6665553 34433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=6.2e-16  Score=157.34  Aligned_cols=276  Identities=18%  Similarity=0.261  Sum_probs=193.6

Q ss_pred             cCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecC---CcceEEEEEcc--CCCEEEEEeCCCeEEEEECC-C----
Q 011457          137 ASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGH---LGWVRSVAFDH--SNTWFCTGSADRTIKIWDVA-K----  206 (485)
Q Consensus       137 ~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H---~~~V~~l~~sp--~~~~l~tgs~dg~I~iwd~~-~----  206 (485)
                      +++-.+.++++..+..+.+|+-.+    .+++..+..+   ...|+.+.+-.  |..++++|+.||.|+||+-- +    
T Consensus      1072 ~hpf~p~i~~ad~r~~i~vwd~e~----~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEK----GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred             ecCCCceeEEcCCcceEEEEeccc----CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence            444444555555555566664322    2233333322   34688888865  55689999999999999732 2    


Q ss_pred             CceEEEEcc-------cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEec-CCCEEEEE
Q 011457          207 GTLKLTLTG-------HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHP-TIDILLTG  277 (485)
Q Consensus       207 ~~~~~~~~~-------h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~-~~~~l~sg  277 (485)
                      .+++..+.+       ..+.=.-+.|.....+|+++|.-..|+|||.+...++..+. +....|+++.-+- .|+.++.|
T Consensus      1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred             ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence            233332221       11112345777776778877778999999999888877774 3344566665443 37999999


Q ss_pred             ECCCcEEEEECCCC---ceEEEeccCCcc--EEEEEEcCCCC-EEEEEeCCCCEEEEECCCCeEEe--EeccC---CCce
Q 011457          278 GRDSVCRVWDIRTK---MQIFALAGHDNT--VCSVFTRPTDP-QVVTGSHDSTIKFWDLRYGKTML--TLTHH---KKSV  346 (485)
Q Consensus       278 ~~dg~i~iwd~~~~---~~~~~~~~~~~~--v~~l~~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~--~~~~~---~~~v  346 (485)
                      ..||.|++||.+..   ..+...+.|+..  |..+.+.+.|- .|++|+.||.|++||++......  .+..|   ++..
T Consensus      1228 faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred             ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccc
Confidence            99999999999854   346677778877  99999988665 49999999999999999842222  22222   2359


Q ss_pred             EEEEECCCCCEEEEEcCCCEEEEECCCCce-----eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          347 RAMALHPTEDCFASASAENIKKFNLPKGEF-----LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       347 ~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      +++..|+....+++|+...|++|++.....     -..+.......+.|++|+|-. .+++|..|..|.||.....
T Consensus      1308 Tal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            999999999999999997799999854322     112334445678999999999 8999999999999986654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=8.1e-15  Score=133.28  Aligned_cols=281  Identities=16%  Similarity=0.166  Sum_probs=192.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQN----  249 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~----  249 (485)
                      -.+..++|++.-..||++..|-.|++||-++ +....++. ....|+|++|-|.+ .-|++|+.. -|.+|.....    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            4578899998777899999999999999766 44444442 45689999999965 456777664 5999976421    


Q ss_pred             ee----------EEEecccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          250 KV----------IRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       250 ~~----------~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      ..          +....+| .+|++|.|++||..+++++. |..|.|||..++..+.....-.+.++-+.|+||+.+|++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            11          1223445 78999999999999999876 678999999998877655445678999999999999999


Q ss_pred             EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCC----Ccee-----------eee---
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPK----GEFL-----------HNM---  380 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~----~~~~-----------~~~---  380 (485)
                      ++-|+..++|+..............+.|...+|+|+|++|.....+.-.+|.+.-    +...           ..+   
T Consensus       256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~  335 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV  335 (445)
T ss_pred             ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence            9999999999655443333333334589999999999988877777655554421    1111           000   


Q ss_pred             --ccC---CcccEEEEEeCCCC-eEEEEeCCC--------cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc--
Q 011457          381 --LSQ---QKTIINSMAVNEEG-VLATGGDNG--------SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV--  444 (485)
Q Consensus       381 --~~~---~~~~i~~~~~~~~~-~l~sg~~dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--  444 (485)
                        ..+   ..+.+.+++|.|.| +|++.-..+        .|.+||.+..-.+.....    +....+. -..++|+|  
T Consensus       336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c----g~i~ge~-P~~IsF~pl~  410 (445)
T KOG2139|consen  336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC----GMIGGEY-PAYISFGPLK  410 (445)
T ss_pred             hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec----ccccCCC-CceEEeeecc
Confidence              001   13568899999999 888765543        366677654332222110    1111111 22344443  


Q ss_pred             -CCCEEEEEECCCcEEEecCC
Q 011457          445 -TGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       445 -~g~~L~s~~~Dg~I~iW~~~  464 (485)
                       +|.+|..+-..|.|.-|.+.
T Consensus       411 n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  411 NEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCCcEEEEEeccCceEeeeeE
Confidence             67778888888988888764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=2e-15  Score=156.04  Aligned_cols=266  Identities=22%  Similarity=0.266  Sum_probs=193.6

Q ss_pred             EECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------eeEEEecccCCceEEEEEecCCCE
Q 011457          202 WDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQN-------KVIRSYHGHLSGVYCLGLHPTIDI  273 (485)
Q Consensus       202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~  273 (485)
                      |+. .|.++..+..|...|..++.++.+ .++++|+.||+|++||+..-       +...++....+.+.++...+.++.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            664 588899999999999999998776 99999999999999998532       334455556788999999999999


Q ss_pred             EEEEECCCcEEEEECCCC--c-----eEEEeccC-CccEEEE-EEcC-CC-CEEEEEeCCCCEEEEECCCCeEEeEecc-
Q 011457          274 LLTGGRDSVCRVWDIRTK--M-----QIFALAGH-DNTVCSV-FTRP-TD-PQVVTGSHDSTIKFWDLRYGKTMLTLTH-  341 (485)
Q Consensus       274 l~sg~~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~~l-~~~~-~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~-  341 (485)
                      +++++.||.|++.+++..  +     +......+ .+.+.++ ++.. .. ..|+.+...+.|..||+++......++. 
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999999999998752  1     11111112 2333333 3322 22 3688888999999999998776665543 


Q ss_pred             -CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCC----CeE-EEEe-CCCcEEEEeC
Q 011457          342 -HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEE----GVL-ATGG-DNGSLWFWDW  413 (485)
Q Consensus       342 -~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----~~l-~sg~-~dg~I~iwd~  413 (485)
                       ..+.|++++.+|.+.+++.|+..| +.+||++-+..+..+..++...+..+..++-    ... .+|. ..+.|.+|++
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence             456899999999999999999888 9999999999998887777788877776643    244 4444 5789999999


Q ss_pred             CCCcccccceee-ec-------cCC----CCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          414 KSGHNFQQAQTI-VQ-------PGS----LDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       414 ~~~~~~~~~~~~-~~-------~~~----~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      .+|.....+... ..       |..    ......+. .++..-+..+.+|+.|+.|+.||.......
T Consensus      1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~-~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS-CGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ccCcceEEEEcCCCCcchhhhcccccCCCCCccccee-eecccCCceeeecCCccceeeccCCCcccc
Confidence            998665444332 10       110    11122233 344444568999999999999998765543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.1e-15  Score=151.53  Aligned_cols=218  Identities=14%  Similarity=0.108  Sum_probs=154.5

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceE--EEEcccccCEEEEEEcCCCCEEEEEe-CCCcE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQV  241 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V  241 (485)
                      .+.+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++..  ..+.+|   ...++|+|||+.|+.++ .+|.+
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence            35567888999999999999999988754   47999999887643  333333   34689999999888764 67876


Q ss_pred             EEE--ECCCCeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCc-eEEEeccCCccEEEEEEcCCCCEEE
Q 011457          242 KCW--DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKM-QIFALAGHDNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       242 ~iw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~  317 (485)
                      .||  |+.+++. ..+..+...+....|+|||+.|+.++ .+|...||++.... ....+ .+..  ....|+|++++|+
T Consensus       273 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia  348 (429)
T PRK01742        273 NIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLV  348 (429)
T ss_pred             EEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEE
Confidence            655  6665554 45555777788999999999776554 57888888875422 22233 3333  4578999999998


Q ss_pred             EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC--CCCceeeeeccCCcccEEEEEeC
Q 011457          318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL--PKGEFLHNMLSQQKTIINSMAVN  394 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~--~~~~~~~~~~~~~~~~i~~~~~~  394 (485)
                      ..+.++ +.+||+.+++........  ...++.|+|+|.+|+.++.++ ..+|++  .+|.....+ ..+.+.+...+|+
T Consensus       349 ~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~~g~~~~p~ws  424 (429)
T PRK01742        349 MINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGSDGQVKFPAWS  424 (429)
T ss_pred             EEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCCCCCCCCcccC
Confidence            887755 666999888754332222  345678999999999887665 666664  356666665 4555667777887


Q ss_pred             CC
Q 011457          395 EE  396 (485)
Q Consensus       395 ~~  396 (485)
                      |-
T Consensus       425 p~  426 (429)
T PRK01742        425 PY  426 (429)
T ss_pred             CC
Confidence            63

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.5e-16  Score=148.96  Aligned_cols=240  Identities=17%  Similarity=0.282  Sum_probs=159.1

Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cccCCceEEEEEecC--CCEEEEEECCCcEE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSGVYCLGLHPT--IDILLTGGRDSVCR  284 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~  284 (485)
                      .+...+.||.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|.  ..++++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            345678999999999999999999999999999999999888888777 589999999999994  45899999999999


Q ss_pred             EEECCC----------CceEEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEe----------EeccCC
Q 011457          285 VWDIRT----------KMQIFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTML----------TLTHHK  343 (485)
Q Consensus       285 iwd~~~----------~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~----------~~~~~~  343 (485)
                      ++|+..          .+....+..|...|..|+..|++ ..+.+++.||+|+-+|++......          .+...-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999984          23455667899999999999998 678899999999999998632111          011111


Q ss_pred             CceEEEEECCCCC-EEEEEcCCC-EEEEECCCCceeeeeccCC----cccEEEEE-eCCCCeEEEEeCCCcEEEEeCCCC
Q 011457          344 KSVRAMALHPTED-CFASASAEN-IKKFNLPKGEFLHNMLSQQ----KTIINSMA-VNEEGVLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       344 ~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~~~~~~~~----~~~i~~~~-~~~~~~l~sg~~dg~I~iwd~~~~  416 (485)
                      -...++.++|... +|++|+.+- .++||.+.......-...+    .....|+. |+|.+.   ...+|.+.       
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~-------  270 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLD-------  270 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCcccccc-------
Confidence            2345566666443 444444444 5566642211100000000    00000110 111110   00011000       


Q ss_pred             cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCC
Q 011457          417 HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH  472 (485)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~  472 (485)
                                     .....++-+.|+|+|.-|+..-..-.|+++++..+..+...
T Consensus       271 ---------------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  271 ---------------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ---------------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence                           01123677899999988777666678999999887755443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.70  E-value=4.8e-14  Score=137.48  Aligned_cols=278  Identities=14%  Similarity=0.187  Sum_probs=183.9

Q ss_pred             CEE-EEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457          188 TWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG  266 (485)
Q Consensus       188 ~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~  266 (485)
                      +++ ++-..++.|.|.|..+.+.+..+......-..+.|+||++++++++.||.|.++|+.+++.++++.. .....+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence            444 4555689999999999999999986544445578999999999999999999999999999999974 44568899


Q ss_pred             EecCCCEEEEEE-CCCcEEEEECCCCceEEEecc-------CCccEEEEEEcCCCCEEEEEeCC-CCEEEEECCCCeEEe
Q 011457          267 LHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAG-------HDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLRYGKTML  337 (485)
Q Consensus       267 ~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~~~~~~~  337 (485)
                      +++||+++++++ .++.+.++|.++.+.+..+..       ....+..+..++..+.++..-.| +.|.+.|....+.+.
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            999999988776 589999999999998887753       23467888888888866665554 888888877654432


Q ss_pred             -EeccCCCceEEEEECCCCCEEEEEcC--CCEEEEECCCCceeeeeccCCc--------------c--------------
Q 011457          338 -TLTHHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFLHNMLSQQK--------------T--------------  386 (485)
Q Consensus       338 -~~~~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~--------------~--------------  386 (485)
                       .............|+|++++++.+..  +.+.++|..+++....+..+..              +              
T Consensus       165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~  244 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP  244 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence             23334556778999999998877533  2388888877655433211000              0              


Q ss_pred             ----------------cE---------EEEEeCCCC-eEEEE----eCCCcEEEEeCCCCcccccceeeeccCCCCCCcc
Q 011457          387 ----------------II---------NSMAVNEEG-VLATG----GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAG  436 (485)
Q Consensus       387 ----------------~i---------~~~~~~~~~-~l~sg----~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  436 (485)
                                      .+         .-+..+|++ ++.+.    ...+.|.++|.++.+....+...       ....
T Consensus       245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~-------~~~~  317 (369)
T PF02239_consen  245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG-------PGKR  317 (369)
T ss_dssp             EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH-------HT--
T ss_pred             cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc-------CCCc
Confidence                            01         234457777 66665    45589999999887655444321       1223


Q ss_pred             EEEEEEccCCCEEEEEECC--CcEEEecCCCCCCCCCCC
Q 011457          437 IYALSYDVTGSRLVTCEAD--KTIKMWREDETATPETHP  473 (485)
Q Consensus       437 V~~l~~s~~g~~L~s~~~D--g~I~iW~~~~~~~~~~~~  473 (485)
                      +..+.|+++|+++..+..+  |.|.|||..+.+.....+
T Consensus       318 ~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  318 VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            8899999999987765544  369999998877665555

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1e-14  Score=131.07  Aligned_cols=275  Identities=17%  Similarity=0.247  Sum_probs=194.3

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeccc
Q 011457          180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGH  258 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h  258 (485)
                      -++|||+|+++|+++.- .+.|-|.++.+..+.+. .-..|.-+.|..+..+++++ ..|+.|.+|++.+.+....+...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            36799999999999765 78888888777655444 24677888999888776655 57889999999999999999888


Q ss_pred             CCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC---------------
Q 011457          259 LSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD---------------  322 (485)
Q Consensus       259 ~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---------------  322 (485)
                      ..++..++|+|||+ +|.+...|-.|.+|.+.+.+....- .....+..++|+++|++.+..+.-               
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            89999999999995 6667777999999999987665433 234456888888888876655432               


Q ss_pred             ---------------------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          323 ---------------------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       323 ---------------------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                                           ..+.+||.--.-.+..+ ...-.+..+.|+|.+++++.|+.|+ +++.+--+.+...++
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef  248 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF  248 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence                                 22334442211111111 1234688899999999999999986 554432111110000


Q ss_pred             -----------------------------------------------------------------ccCCcccEEEEEeCC
Q 011457          381 -----------------------------------------------------------------LSQQKTIINSMAVNE  395 (485)
Q Consensus       381 -----------------------------------------------------------------~~~~~~~i~~~~~~~  395 (485)
                                                                                       .......+..++|++
T Consensus       249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~  328 (447)
T KOG4497|consen  249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC  328 (447)
T ss_pred             ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence                                                                             001112366789999


Q ss_pred             CC-eEEEEeCC--CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          396 EG-VLATGGDN--GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       396 ~~-~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      |. ++++-.+.  +.+.+||++..+....+.         ....|....|+|...+|+.+.....+++|......
T Consensus       329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi---------Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~  394 (447)
T KOG4497|consen  329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLI---------QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR  394 (447)
T ss_pred             CceEEeeecCCCCceEEEEechhhhhhhhhh---------hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence            99 55544332  579999998876655443         35579999999999999988888889999887633

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.8e-16  Score=146.85  Aligned_cols=290  Identities=18%  Similarity=0.300  Sum_probs=224.7

Q ss_pred             cCCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEEeCCCeEEE
Q 011457          124 GASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTGSADRTIKI  201 (485)
Q Consensus       124 ~~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tgs~dg~I~i  201 (485)
                      ...+|.+.+.++.|...|..+++++.|..+.+|   +|...-..++-..||...|..-.|-|  +...+++++.||.|++
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~W---dW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVW---DWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEee---hhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            356899999999999999999999999999999   55555566677779999999999988  4567999999999999


Q ss_pred             EECCC-Cce--EEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEe---cccCC---ceEEEEEecCC
Q 011457          202 WDVAK-GTL--KLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSY---HGHLS---GVYCLGLHPTI  271 (485)
Q Consensus       202 wd~~~-~~~--~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~---~v~~l~~~~~~  271 (485)
                      =.+.. +.+  ...+..|.+.|..++.-|+.. -|.+++.|+.|.-+|+.++.....+   ..+..   ..+.++.+|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            87643 322  344667999999999999765 4789999999999999887543333   22333   56788888864


Q ss_pred             C-EEEEEECCCcEEEEECCCCce------EEEec------cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC--C---
Q 011457          272 D-ILLTGGRDSVCRVWDIRTKMQ------IFALA------GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY--G---  333 (485)
Q Consensus       272 ~-~l~sg~~dg~i~iwd~~~~~~------~~~~~------~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~--~---  333 (485)
                      . .+++|+.|-.+++||.+.-..      +..+.      ...-.|++++|+.++.-|++...|-.|++|.-..  |   
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence            4 899999999999999874321      12221      2234789999998888888889999999995432  2   


Q ss_pred             -------eEEe-EeccCCC--ceEEEEE-CCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEE
Q 011457          334 -------KTML-TLTHHKK--SVRAMAL-HPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLA  400 (485)
Q Consensus       334 -------~~~~-~~~~~~~--~v~~l~~-~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~  400 (485)
                             ..+. .+++|..  .|..+-| -|...++++|++-+ |.+|+-.+++.+..+ .+....|+|+.-+|-- +|+
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M-egDr~VVNCLEpHP~~PvLA  452 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM-EGDRHVVNCLEPHPHLPVLA  452 (559)
T ss_pred             CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh-hcccceEeccCCCCCCchhh
Confidence                   1122 2566654  4677754 67888999999887 999999999988775 4445599999999988 999


Q ss_pred             EEeCCCcEEEEeCCCCc
Q 011457          401 TGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       401 sg~~dg~I~iwd~~~~~  417 (485)
                      +.+-|..|+||--.+.+
T Consensus       453 sSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  453 SSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             ccCCccceeeecCCccc
Confidence            99999999999864433

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.4e-14  Score=138.85  Aligned_cols=281  Identities=14%  Similarity=0.133  Sum_probs=212.0

Q ss_pred             cCCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457          173 GHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      +|...-+.|..+|||+|+ |||..--.|++||+....+...-......|.-.-++.|-..++.-..|.+|.+..-. |..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h  127 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH  127 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence            578889999999999975 677778899999998776654433334566666666666666666678877765422 221


Q ss_pred             EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457          252 IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR  331 (485)
Q Consensus       252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~  331 (485)
                      .. +. -...-..|+++.-.--|+.++....|+-++++.|.-+..+....+.++++..++...+|++|+.+|.|.+||.+
T Consensus       128 y~-~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR  205 (703)
T KOG2321|consen  128 YR-TR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR  205 (703)
T ss_pred             ee-ee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence            11 11 11222456666544445666666789999999999998888777999999999999999999999999999999


Q ss_pred             CCeEEeEecc------CC-----CceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--
Q 011457          332 YGKTMLTLTH------HK-----KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--  397 (485)
Q Consensus       332 ~~~~~~~~~~------~~-----~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--  397 (485)
                      ....+..+..      +.     ..|+++.|+.+|-.+++|+..+ +.+||++..+++..-......+|..+.|.+.+  
T Consensus       206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence            8766555432      22     2499999999999999998887 99999999988876655666789999997764  


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      --+...+...++|||-.+|+.+..+.         ....++.+|+-|++.+++++-.++.+..|=+..
T Consensus       286 ~~v~S~Dk~~~kiWd~~~Gk~~asiE---------pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  286 NKVVSMDKRILKIWDECTGKPMASIE---------PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ceEEecchHHhhhcccccCCceeecc---------ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            34444556789999999998877654         345589999999999999999888887776554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=5.8e-14  Score=125.88  Aligned_cols=241  Identities=16%  Similarity=0.252  Sum_probs=170.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE-EEECC------CcEEEEECCCC
Q 011457          219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL-TGGRD------SVCRVWDIRTK  291 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sg~~d------g~i~iwd~~~~  291 (485)
                      ...+++|+.|...++++..+| .+||+.+--+.......+.+.+.-+...-..++|+ +||.+      ..|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345599999999888887766 89999875433222222222221111111234444 34333      47999997777


Q ss_pred             ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeEEeEeccC--CCceEEEEECCCCCEEEEEcCCC--E
Q 011457          292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKTMLTLTHH--KKSVRAMALHPTEDCFASASAEN--I  366 (485)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~--~~~v~~l~~~p~~~~l~~~~~~~--i  366 (485)
                      +++.++. ...+|.++.+.++  .+++.- .+.|++|... +.+.+..+...  .....+++-+.+..+|+.-+...  +
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            8888886 6789999999865  454443 5789999887 44555544332  22344444444455666555443  9


Q ss_pred             EEEECCCCce-eeeeccCCcccEEEEEeCCCC-eEEEEeCCCc-EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457          367 KKFNLPKGEF-LHNMLSQQKTIINSMAVNEEG-VLATGGDNGS-LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD  443 (485)
Q Consensus       367 ~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  443 (485)
                      .+.|+...+. ...+...|...|.|++.+-+| ++|+++..|+ |+|||..+|+.++++..-      ...+.|++++||
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG------~d~A~iy~iaFS  235 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG------VDRADIYCIAFS  235 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC------CchheEEEEEeC
Confidence            9999977665 334567899999999999999 9999999997 899999999999887642      245679999999


Q ss_pred             cCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          444 VTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       444 ~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      |++.+|++++.-|+|.||.+......+
T Consensus       236 p~~s~LavsSdKgTlHiF~l~~~~~~~  262 (346)
T KOG2111|consen  236 PNSSWLAVSSDKGTLHIFSLRDTENTE  262 (346)
T ss_pred             CCccEEEEEcCCCeEEEEEeecCCCCc
Confidence            999999999999999999998765433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=1.1e-12  Score=128.05  Aligned_cols=257  Identities=15%  Similarity=0.156  Sum_probs=169.9

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKC  243 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~i  243 (485)
                      .+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ....++++++|++++++. .++.+.+
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred             CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeE
Confidence            56677777654444557899999999999999999999999999999988544 467899999999998775 6899999


Q ss_pred             EECCCCeeEEEeccc-------CCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCC
Q 011457          244 WDLEQNKVIRSYHGH-------LSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDP  314 (485)
Q Consensus       244 wd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~  314 (485)
                      +|.++.+.++.+...       ...+..+..+|....++..-. -+.|.+.|....+.+. .............|+|+++
T Consensus       105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr  184 (369)
T PF02239_consen  105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR  184 (369)
T ss_dssp             EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred             eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence            999999999887532       346778888888885555555 4888888987655432 2223455677889999999


Q ss_pred             EEEEE-eCCCCEEEEECCCCeEEeEe------------------------------------------------------
Q 011457          315 QVVTG-SHDSTIKFWDLRYGKTMLTL------------------------------------------------------  339 (485)
Q Consensus       315 ~l~s~-s~dg~I~iwd~~~~~~~~~~------------------------------------------------------  339 (485)
                      +++++ ..+..|-++|..+++.+..+                                                      
T Consensus       185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~  264 (369)
T PF02239_consen  185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT  264 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred             eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence            87765 44567888887766443321                                                      


Q ss_pred             -ccCCCceEEEEECCCCCEEEEE---cCC--CEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEE-eCCCcEEE
Q 011457          340 -THHKKSVRAMALHPTEDCFASA---SAE--NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATG-GDNGSLWF  410 (485)
Q Consensus       340 -~~~~~~v~~l~~~p~~~~l~~~---~~~--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg-~~dg~I~i  410 (485)
                       .....+ .-+..||++.++.+.   +.+  .|.++|..+.+....+.......+..+.|+++|  ..++. ..+|.|.+
T Consensus       265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v  343 (369)
T PF02239_consen  265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV  343 (369)
T ss_dssp             EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred             EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence             111112 345668999999888   333  399999999988777654444558999999999  33333 33448999


Q ss_pred             EeCCCCcccccce
Q 011457          411 WDWKSGHNFQQAQ  423 (485)
Q Consensus       411 wd~~~~~~~~~~~  423 (485)
                      ||..+.+....+.
T Consensus       344 ~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  344 YDAKTLKEKKRIP  356 (369)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             EECCCcEEEEEEE
Confidence            9999988776654

...

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.64  E-value=4.4e-15  Score=129.58  Aligned_cols=239  Identities=18%  Similarity=0.218  Sum_probs=177.0

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe-cCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      +|++.+.+..|..++. +.++.....+..|....    ......++ .|...|+.+.--|+ ..|.+-+.|..+.+|++.
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt----~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQT----ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeec----CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence            4666677776666655 45566677778886533    22333444 57788999998887 558888899999999986


Q ss_pred             CCceEE--------------EE---------------------------------------cccccCEEEEEEcC-CC--
Q 011457          206 KGTLKL--------------TL---------------------------------------TGHIEQVRGLAVSS-KH--  229 (485)
Q Consensus       206 ~~~~~~--------------~~---------------------------------------~~h~~~V~~l~~s~-~~--  229 (485)
                      -+..+.              .+                                       .+..+.+.|..+.. ++  
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            421110              00                                       01123445554322 22  


Q ss_pred             CEEEEEeCCCcEEEEECCCCee----------EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC--ce--EE
Q 011457          230 TYMFSAGDDKQVKCWDLEQNKV----------IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK--MQ--IF  295 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~--~~--~~  295 (485)
                      -+++.|-++|.|.+||+.++..          +..+..|..+|.++.|.+.-+.=++|+.+-.+..|++...  ..  -.
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            2466778999999999998733          3444579999999999987666788888889999988643  21  11


Q ss_pred             EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457          296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL  371 (485)
Q Consensus       296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~  371 (485)
                      ...-....|..+.+.||++.+++++.|+.||+|..++..++..++-|...|.+++|+|+..++++++.|. |.+|++
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            2222356788999999999999999999999999999999999999999999999999999999999998 999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.64  E-value=9.4e-16  Score=143.44  Aligned_cols=265  Identities=17%  Similarity=0.217  Sum_probs=204.2

Q ss_pred             cccCCCCcccccccccCCCC--CCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q 011457          135 TSASSERNLSTSAIMERIPS--KWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT  212 (485)
Q Consensus       135 ~~~~~~~~~~~t~~~~~~~~--~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~  212 (485)
                      ..++.+|..+.-++...-+.  .|-.      -++...+ .-...|.++.|-.+.++||++ ....++||| ..|..+++
T Consensus       135 ~~ytrnGrhlllgGrKGHlAa~Dw~t------~~L~~Ei-~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC  205 (545)
T KOG1272|consen  135 LDYTRNGRHLLLGGRKGHLAAFDWVT------KKLHFEI-NVMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC  205 (545)
T ss_pred             eeecCCccEEEecCCccceeeeeccc------ceeeeee-ehhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence            34555666555555555443  3322      2233333 345789999999888888877 567899999 67888888


Q ss_pred             EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      +..| ..|..+.|-|.+-+|++++..|.++.-|+.+|+.+..+....+.+..|+-+|-+-.+-+|..+|+|.+|.....+
T Consensus       206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            8866 678999999999999999999999999999999999998888999999999998899999999999999999999


Q ss_pred             eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC
Q 011457          293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP  372 (485)
Q Consensus       293 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~  372 (485)
                      ++..+.+|.++|.+|++.++|.++++.+.|..++|||++....+.++.. ..+...+++|..| +|+.+-.+.+.+|.-.
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~  362 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWKDA  362 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCCeeeeehhh
Confidence            9999999999999999999999999999999999999999887776655 4566778887544 5666666679999532


Q ss_pred             -CCc---eeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEE
Q 011457          373 -KGE---FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFW  411 (485)
Q Consensus       373 -~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iw  411 (485)
                       .+.   ...-+.......|..+.|.|-. +|-+|...|.-.+.
T Consensus       363 ~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  363 LKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             hcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence             211   1111112223578888888866 66666666544443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=4.7e-14  Score=134.40  Aligned_cols=215  Identities=11%  Similarity=0.142  Sum_probs=156.8

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE------EEcccccCEEEEEE-----cCCCCEEEEEeCCCcEEEEE
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL------TLTGHIEQVRGLAV-----SSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~------~~~~h~~~V~~l~~-----s~~~~~l~s~~~dg~V~iwd  245 (485)
                      .++...++-.|++|+-.- ...+++|+...+....      .+.+  ....|-+|     .+.+--|+.|-.-|.|.+.|
T Consensus       125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID  201 (636)
T ss_pred             ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence            344445555666666543 2468888876432111      1221  22233344     34566788888889999999


Q ss_pred             CCCCeeEEEec----ccCCceEEEEEecCC-CEEEEEECCCcEEEEECCC--------------Cc--------------
Q 011457          246 LEQNKVIRSYH----GHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRT--------------KM--------------  292 (485)
Q Consensus       246 ~~~~~~~~~~~----~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~--------------~~--------------  292 (485)
                      ....+..+.+.    -....|+|+.|-|.+ ..++.+-.+|.+++||..-              +.              
T Consensus       202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN  281 (636)
T KOG2394|consen  202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN  281 (636)
T ss_pred             chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence            87643322221    234789999999954 4777788899999998641              11              


Q ss_pred             eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457          293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL  371 (485)
Q Consensus       293 ~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~  371 (485)
                      ++..+..-++.|..++|+|||++|++.+.||.+||||..+.+.+..++..-+...|++|+|||++|++|+.|. +.+|.+
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence            1111222345788999999999999999999999999999888877777788999999999999999999998 999999


Q ss_pred             CCCceeeeeccCCcccEEEEEeCC
Q 011457          372 PKGEFLHNMLSQQKTIINSMAVNE  395 (485)
Q Consensus       372 ~~~~~~~~~~~~~~~~i~~~~~~~  395 (485)
                      ...+.+.. -.+|+..|+.++|.|
T Consensus       362 ~erRVVAR-GqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  362 EERRVVAR-GQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccceEEEe-ccccccceeeEeecc
Confidence            99988876 478999999999997

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=5.1e-13  Score=134.02  Aligned_cols=232  Identities=9%  Similarity=0.053  Sum_probs=156.1

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG---DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI  273 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  273 (485)
                      ..|.+||...... ..+..+...+...+|+|||+.|+..+   .+..|.+||+.+++.... ......+....|+|||+.
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence            4799999865543 44455677899999999999888654   245799999988754332 223334556899999998


Q ss_pred             EEEE-ECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC-CC--EEEEECCCCeEEeEeccCCCceE
Q 011457          274 LLTG-GRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-ST--IKFWDLRYGKTMLTLTHHKKSVR  347 (485)
Q Consensus       274 l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g~--I~iwd~~~~~~~~~~~~~~~~v~  347 (485)
                      |+.. +.+|  .|++||+.+++... +..+...+....|+|+++.|+..+.+ +.  |.++|+.+++. ..+........
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~  334 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ  334 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence            8765 4455  58999998876544 44445577889999999988777654 44  44557766544 33333444566


Q ss_pred             EEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCc---EEEEeCCCCccc
Q 011457          348 AMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGS---LWFWDWKSGHNF  419 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~---I~iwd~~~~~~~  419 (485)
                      ...|+|+|++++..+.+    .+.+||+.+++.. .+...  .......|+||| .|+.++.++.   +.++++. |...
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~  410 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFK  410 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCe
Confidence            78999999998876543    2888999887643 22222  123467799999 7777776654   6777774 3333


Q ss_pred             ccceeeeccCCCCCCccEEEEEEcc
Q 011457          420 QQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       420 ~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                      ..+.        .+...+...+|+|
T Consensus       411 ~~l~--------~~~~~~~~p~Wsp  427 (429)
T PRK03629        411 ARLP--------ATDGQVKFPAWSP  427 (429)
T ss_pred             EECc--------cCCCCcCCcccCC
Confidence            3332        2445677777876

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=6e-13  Score=127.84  Aligned_cols=273  Identities=14%  Similarity=0.238  Sum_probs=180.6

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-----eC-----CCcEEEEE
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-----GD-----DKQVKCWD  245 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-----~~-----dg~V~iwd  245 (485)
                      .+++..+++++|++||.+. +..++|++..++..+.+....  .+.++.|+|.+.||.+=     ..     .-.+++|+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            3477888999999888774 578999999888755555533  78999999999998752     11     24577999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCC-C-EEEE-----
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD-P-QVVT-----  318 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~-~l~s-----  318 (485)
                      ++++.....+......-++..|+.|..+ +.--..+.+.+|++...+.+..- -|...|+.+.++|.. . .+++     
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceeee-eeccceeeEEecCCCCCceEEEEccCC
Confidence            9996555555422222268888888653 32233467888888764332221 245556666666542 1 2221     


Q ss_pred             EeCCCCEEEEECCC--------------------------------------------------------CeEEeEeccC
Q 011457          319 GSHDSTIKFWDLRY--------------------------------------------------------GKTMLTLTHH  342 (485)
Q Consensus       319 ~s~dg~I~iwd~~~--------------------------------------------------------~~~~~~~~~~  342 (485)
                      .+.-+.++||....                                                        |.....--..
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k  269 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK  269 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence            22223444443320                                                        1111111123


Q ss_pred             CCceEEEEECCCCCEEEEEcCC---CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe-C--CCcEEEEeCCC
Q 011457          343 KKSVRAMALHPTEDCFASASAE---NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG-D--NGSLWFWDWKS  415 (485)
Q Consensus       343 ~~~v~~l~~~p~~~~l~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~--dg~I~iwd~~~  415 (485)
                      .++|.++.|+|+++-|+++..-   .+.+||++ +..+..+   ..+.-+++.|+|.| +++.+| .  .|.|-|||+.+
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            6789999999999888776543   38889874 5555554   45567899999999 444443 3  38999999999


Q ss_pred             CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC------CCcEEEecCCCCC
Q 011457          416 GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA------DKTIKMWREDETA  467 (485)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~------Dg~I~iW~~~~~~  467 (485)
                      .+++..+..          ..-+-+.|+|||++|+|+..      |+.++||++....
T Consensus       346 ~K~i~~~~a----------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  346 RKLIAKFKA----------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             hhhcccccc----------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            777766543          23456789999999999874      7889999987654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=2.1e-13  Score=125.41  Aligned_cols=221  Identities=19%  Similarity=0.272  Sum_probs=173.8

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc----eEEEEcccccCEEEEEEcCCCCEEE-EEeCC--CcEE
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT----LKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD--KQVK  242 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~d--g~V~  242 (485)
                      ...+.+++|..++..  +..|++|-.+|.+.+|..+.+.    ....+..+ ..+..+.-++...+|+ +||..  ..++
T Consensus       100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk  176 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK  176 (412)
T ss_pred             ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence            444667788888765  4568888899999999988443    22223323 5566777777666555 58888  8999


Q ss_pred             EEECCCCeeEEEeccc---------CCceEEEEEecC--CCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEc
Q 011457          243 CWDLEQNKVIRSYHGH---------LSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTR  310 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h---------~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~  310 (485)
                      |||+++.+.+.+-+.-         .-.++++.|-+.  ...|++++.-+.+++||.+.+ +++..+...+.+++++...
T Consensus       177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT  256 (412)
T ss_pred             eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence            9999988666554321         124678889887  789999999999999999865 5678888888999999999


Q ss_pred             CCCCEEEEEeCCCCEEEEECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE
Q 011457          311 PTDPQVVTGSHDSTIKFWDLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       311 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      |+++++++|..-|.+..||++.++.... +.+..+.|++|..+|...++++++-|. ++|+|+.+.+.+...+.  ...+
T Consensus       257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~l  334 (412)
T KOG3881|consen  257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRL  334 (412)
T ss_pred             CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh--hccc
Confidence            9999999999999999999999998877 888899999999999999999999998 99999999777666432  2334


Q ss_pred             EEEEeCC
Q 011457          389 NSMAVNE  395 (485)
Q Consensus       389 ~~~~~~~  395 (485)
                      +++.+.+
T Consensus       335 t~il~~~  341 (412)
T KOG3881|consen  335 TFILLRD  341 (412)
T ss_pred             cEEEecC
Confidence            5554433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=1.7e-14  Score=137.45  Aligned_cols=169  Identities=15%  Similarity=0.183  Sum_probs=135.8

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceEEEEc----ccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----------
Q 011457          185 HSNTWFCTGSADRTIKIWDVAKGTLKLTLT----GHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQN----------  249 (485)
Q Consensus       185 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~----------  249 (485)
                      |++--|+.|-.-|.|.+.|....+..+.+.    -....|+|+.|-|.+. .++++-.+|.+.+||.+..          
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            456667888888899998876532222111    1347899999998654 5556678999999976311          


Q ss_pred             ------------------eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC
Q 011457          250 ------------------KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP  311 (485)
Q Consensus       250 ------------------~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  311 (485)
                                        ..+..+.--.+.|..++|+|||++|++.+.||.++|||..+.+.+..++..-+...|++|+|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence                              11122222345788999999999999999999999999999988888888888999999999


Q ss_pred             CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC
Q 011457          312 TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP  353 (485)
Q Consensus       312 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p  353 (485)
                      ||+++++|++|.-|.||.+...+.+..-.+|+..|..++|.|
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999999999999999999999999999999999999997

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.60  E-value=7.1e-14  Score=126.46  Aligned_cols=248  Identities=14%  Similarity=0.206  Sum_probs=188.1

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC-CCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV-AKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVK  242 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~-~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~  242 (485)
                      +.+++.++||.+.|++...-|..+-+++.+.|.+++||-- +.++.-..+. .-..+++++.+.++...|++|-..|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            3467888999999999999998888999999999999953 3344333332 2357889999999999999999999999


Q ss_pred             EEECC----CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          243 CWDLE----QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       243 iwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      -+.+.    ....++.+..|...|..+-|+-....+++.+.|..+..--.+.+..+..... ...-+++.+.-.  +...
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFV  170 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEe
Confidence            98663    4456677788999999999999889999999998876555555443322110 111111111111  5566


Q ss_pred             EeCCCCEEEEEC--CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC
Q 011457          319 GSHDSTIKFWDL--RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE  395 (485)
Q Consensus       319 ~s~dg~I~iwd~--~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~  395 (485)
                      |...|.|..-.+  ..-..+.++.+|...+.++.|.+....+.++..+. +.+||+.-++.......++...+..+..-+
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ  250 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence            666776665544  34567888999999999999999999999998887 999999877776666677888888777665


Q ss_pred             CC-eEEEEeCCCcEEEEeCCC
Q 011457          396 EG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       396 ~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      -- .+++++.||.|.+||++.
T Consensus       251 ~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hheeeeeccCCCeEEEEeccc
Confidence            55 899999999999999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=2.2e-13  Score=125.38  Aligned_cols=245  Identities=16%  Similarity=0.258  Sum_probs=188.3

Q ss_pred             CcceEEEEEccCC--CEEEEEeCCCeEEEEECCCCceEEEE------cccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          175 LGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAKGTLKLTL------TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       175 ~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~~~~~~~~------~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      ...|..++|.-++  +.|...+.|..+..+.+........+      .....+|..++..  ...|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            4556777776544  45555557777888877766544432      3345666666654  345788889999999998


Q ss_pred             CCCe----eEEEecccCCceEEEEEecCCC-EEEEEECC--CcEEEEECCCCceEEEeccCC---------ccEEEEEEc
Q 011457          247 EQNK----VIRSYHGHLSGVYCLGLHPTID-ILLTGGRD--SVCRVWDIRTKMQIFALAGHD---------NTVCSVFTR  310 (485)
Q Consensus       247 ~~~~----~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~~  310 (485)
                      +.+.    .+..+..+ ..+..+.-++... ++++||..  ..+.|||++..++++.-+.-.         -.++++.|-
T Consensus       133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            8543    22333323 5567777776544 66669988  889999999887777655322         246778888


Q ss_pred             CC--CCEEEEEeCCCCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457          311 PT--DPQVVTGSHDSTIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT  386 (485)
Q Consensus       311 ~~--~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~  386 (485)
                      +.  ...|++++.-+.+++||.+.+ +++..+.....+++++...|++++++++...+ +..||++.++.+...+.+..+
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG  291 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence            87  789999999999999999875 46778888889999999999999999998776 999999999999887888899


Q ss_pred             cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc
Q 011457          387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA  422 (485)
Q Consensus       387 ~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~  422 (485)
                      .+.++..+|.. ++++++-|..++|+|+++.+.+...
T Consensus       292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv  328 (412)
T KOG3881|consen  292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV  328 (412)
T ss_pred             CcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence            99999999998 9999999999999999996665443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.8e-13  Score=135.51  Aligned_cols=221  Identities=13%  Similarity=0.054  Sum_probs=151.6

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCC--cE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDK--QV  241 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg--~V  241 (485)
                      .+.+..|...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+...+..|+|+|+.|+ +.+.+|  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            44566778889999999999999988743   479999998876543 333445556789999998775 445555  59


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CCc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      .+||+.+++.. .+..+.......+|+|||+.|+.++. +|.  |+++|+.+++.. .+..+........|+|+|++++.
T Consensus       275 y~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~  352 (433)
T PRK04922        275 YVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAM  352 (433)
T ss_pred             EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEE
Confidence            99999887754 45445555678899999998887764 444  667777666543 33323344557899999999987


Q ss_pred             EeCCC---CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEE
Q 011457          319 GSHDS---TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       319 ~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      .+.++   .|.+||+.+++.. .+.. ........|+|+|++++..+..    .+.+++... .....+ ..+.+.+...
T Consensus       353 ~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l-~~~~g~~~~p  428 (433)
T PRK04922        353 VHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRL-VSADGEVREP  428 (433)
T ss_pred             EECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEc-ccCCCCCCCC
Confidence            65443   5999999877654 3332 2244567999999988776653    277888743 333333 2233444555


Q ss_pred             EeCC
Q 011457          392 AVNE  395 (485)
Q Consensus       392 ~~~~  395 (485)
                      +|+|
T Consensus       429 ~wsp  432 (433)
T PRK04922        429 AWSP  432 (433)
T ss_pred             ccCC
Confidence            5554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=5.9e-13  Score=133.58  Aligned_cols=220  Identities=13%  Similarity=0.050  Sum_probs=151.3

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeC---CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCC--cEE
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSA---DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDK--QVK  242 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg--~V~  242 (485)
                      +.+..+.+.+.+.+|+|||+.|+..+.   +..|.+|++.+++.... ....+.+....|+|||+.|+.. +.+|  .|.
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            445567788999999999999887543   45799999988864332 2233345568999999988765 4444  589


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-Cc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD-SV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      +||+.+++..+... +...+....|+|||+.|+..+.+ +.  |.++|+.+++. ..+...........|+|+|++++..
T Consensus       271 ~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~  348 (429)
T PRK03629        271 VMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV  348 (429)
T ss_pred             EEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEE
Confidence            99998887654433 44567889999999988777654 44  55556666543 3444344556678999999998876


Q ss_pred             eCC---CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEE
Q 011457          320 SHD---STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMA  392 (485)
Q Consensus       320 s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~  392 (485)
                      +.+   ..|.+||+.+++.. .+... .......|+|||.+++..+.++    +.++++ +|.....+ ..+...+...+
T Consensus       349 ~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l-~~~~~~~~~p~  424 (429)
T PRK03629        349 SSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL-PATDGQVKFPA  424 (429)
T ss_pred             EccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC-ccCCCCcCCcc
Confidence            544   35888999877643 33322 2345678999999998887654    666676 45444544 34555666777


Q ss_pred             eCC
Q 011457          393 VNE  395 (485)
Q Consensus       393 ~~~  395 (485)
                      |+|
T Consensus       425 Wsp  427 (429)
T PRK03629        425 WSP  427 (429)
T ss_pred             cCC
Confidence            776

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.1e-13  Score=123.15  Aligned_cols=247  Identities=16%  Similarity=0.222  Sum_probs=166.6

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCC---
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTK---  291 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~---  291 (485)
                      +..++.++|++.-..++++..|-.|++||-.. ++...++ .....|+|++|-|.+ ..|++|+..| |.+|.....   
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence            35678899998767788999999999999765 4444443 345679999999964 4677777655 899986421   


Q ss_pred             -ce----------EEEeccCCccEEEEEEcCCCCEEEEEeC-CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          292 -MQ----------IFALAGHDNTVCSVFTRPTDPQVVTGSH-DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       292 -~~----------~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                       ..          +..-.+| ..|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+||+.+|.
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence             11          2222344 68999999999999998875 56799999999887665555567789999999999999


Q ss_pred             EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccc----cceeeecc----
Q 011457          360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQ----QAQTIVQP----  428 (485)
Q Consensus       360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~----~~~~~~~~----  428 (485)
                      ++.-|. .++|.............. .+.|....|+|+|  +|++.+..-.++-..........    ..+.....    
T Consensus       255 aAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             Eecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence            888887 899966544333333222 3389999999999  55555544444333222111110    00011000    


Q ss_pred             ------CCCCCCccEEEEEEccCCCEEEEEECCC--------cEEEecCCCCC
Q 011457          429 ------GSLDSEAGIYALSYDVTGSRLVTCEADK--------TIKMWREDETA  467 (485)
Q Consensus       429 ------~~~~~~~~V~~l~~s~~g~~L~s~~~Dg--------~I~iW~~~~~~  467 (485)
                            +..--.+++.+++|+|.|.+|++.-..+        .|.+|+.....
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence                  1111245688999999999999876543        36667665443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.4e-13  Score=134.58  Aligned_cols=210  Identities=14%  Similarity=0.097  Sum_probs=141.0

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI  273 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  273 (485)
                      ..|.++|. ++.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++... +....+.+.+..|+|||+.
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            46888886 455455566677889999999999998877643   469999999887543 3333455678999999987


Q ss_pred             EE-EEECCCcEEEEEC--CCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CCCEEEEEC--CCCeEEeEeccCCCceE
Q 011457          274 LL-TGGRDSVCRVWDI--RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DSTIKFWDL--RYGKTMLTLTHHKKSVR  347 (485)
Q Consensus       274 l~-sg~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~I~iwd~--~~~~~~~~~~~~~~~v~  347 (485)
                      |+ +.+.+|...||.+  ..+. ...+..+........|+|||+.|+..+. +|...+|.+  ..++. ..+........
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~  331 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT  331 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence            76 5677887666654  4443 4556555556677899999998876654 466666654  44433 22222233345


Q ss_pred             EEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC-CCc--EEEEeC
Q 011457          348 AMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD-NGS--LWFWDW  413 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-dg~--I~iwd~  413 (485)
                      ...|+|+|++++..+..+    |.+||+.+++... +...  .......|+|++ .|+..+. .|.  +++.++
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            678999999988766442    9999998887543 2222  233577899999 5555544 333  555555

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.5e-12  Score=131.31  Aligned_cols=214  Identities=14%  Similarity=0.061  Sum_probs=151.4

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI  273 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  273 (485)
                      ..|.+||.. +.....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+...+|+|||+.
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            479999975 4445567778889999999999998887753   468999999888653 34446667788999999987


Q ss_pred             EE-EEECCCc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC--CEEEEECCCCeEEeEeccCCCceE
Q 011457          274 LL-TGGRDSV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS--TIKFWDLRYGKTMLTLTHHKKSVR  347 (485)
Q Consensus       274 l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~  347 (485)
                      |+ +.+.++.  |++||+.++.. ..+..+........|+|+++.|+..+. +|  .|.+||+..++. ..+......+.
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~  337 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYS  337 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCccc
Confidence            65 5555655  77789887754 456556666778999999998887764 33  588889876544 33433445567


Q ss_pred             EEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC-C-----CcEEEEeCCCC
Q 011457          348 AMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD-N-----GSLWFWDWKSG  416 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-d-----g~I~iwd~~~~  416 (485)
                      ...|+|+|+.++....+    .|.+|++..+.. ..+..  ...+....|+|+| .|+..+. .     ..++++|+..+
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            78999999998876543    288888755543 33222  2246678899999 5544333 2     25788887655


Q ss_pred             c
Q 011457          417 H  417 (485)
Q Consensus       417 ~  417 (485)
                      .
T Consensus       415 ~  415 (435)
T PRK05137        415 N  415 (435)
T ss_pred             c
Confidence            4

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=5.4e-13  Score=134.37  Aligned_cols=212  Identities=15%  Similarity=0.057  Sum_probs=146.9

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI  273 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  273 (485)
                      ..|.+||... .....+..+...+.+.+|+|+++.|+.++.+   ..|.+||+.+++... +..+.+...+..|+|+|+.
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            4699999854 4445566677889999999999999887643   469999998876543 3334445568899999987


Q ss_pred             EE-EEECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CCC--EEEEECCCCeEEeEeccCCCceE
Q 011457          274 LL-TGGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DST--IKFWDLRYGKTMLTLTHHKKSVR  347 (485)
Q Consensus       274 l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~--I~iwd~~~~~~~~~~~~~~~~v~  347 (485)
                      |+ +.+.+|  .|++||+.+++. ..+..+........|+|++++|+.++. +|.  |.++|+.+++... +........
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~  339 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA  339 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence            65 445555  599999988764 445555556678899999998887764 444  6667776665432 322333455


Q ss_pred             EEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC---CcEEEEeCCC
Q 011457          348 AMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN---GSLWFWDWKS  415 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d---g~I~iwd~~~  415 (485)
                      ..+|+|+|++++..+.+    .|.+|++.+++.. .+..  ........|+++| .++..+.+   +.|++++...
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            78999999998876533    2899999887654 3222  2233456899999 55554442   4577888754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.8e-13  Score=135.05  Aligned_cols=221  Identities=11%  Similarity=0.051  Sum_probs=148.1

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKC  243 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~i  243 (485)
                      .+.+..+.+.+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.|+ +.+.+|...|
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence            34455788899999999999999887643   469999999887543 333445667899999998876 5677887666


Q ss_pred             EE--CCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CCcEEEEEC--CCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          244 WD--LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDI--RTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       244 wd--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      |.  +.++. ...+..+........|+|||+.|+..+. +|...+|.+  .++.. ..+...........|+|+|++|+.
T Consensus       267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~  344 (427)
T PRK02889        267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAY  344 (427)
T ss_pred             EEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEE
Confidence            65  44444 4555555556677899999998876654 466666655  44432 222223334456789999999987


Q ss_pred             EeCCC---CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEE
Q 011457          319 GSHDS---TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       319 ~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      .+.++   .|.+||+.+++... +.. ........|+|+++.|+..+.++    +.+.+. ++.....+ ..+.+.+...
T Consensus       345 ~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l-~~~~g~~~~p  420 (427)
T PRK02889        345 ISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL-SVQGGDVREP  420 (427)
T ss_pred             EEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe-ecCCCCCCCC
Confidence            77654   59999998876543 332 22346789999999888776543    555565 34444333 2333445555


Q ss_pred             EeCC
Q 011457          392 AVNE  395 (485)
Q Consensus       392 ~~~~  395 (485)
                      +|+|
T Consensus       421 ~wsp  424 (427)
T PRK02889        421 SWGP  424 (427)
T ss_pred             ccCC
Confidence            5554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.58  E-value=7.5e-13  Score=128.11  Aligned_cols=188  Identities=17%  Similarity=0.215  Sum_probs=158.5

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceEEEEcc---cccCEEEEEEc--------------------CCCCEEEEEeCCCc
Q 011457          184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG---HIEQVRGLAVS--------------------SKHTYMFSAGDDKQ  240 (485)
Q Consensus       184 sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~s--------------------~~~~~l~s~~~dg~  240 (485)
                      .|...+||....||.++||+..++++...|..   -.+..++..|.                    .+...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567999999999999999999988777643   23444555552                    23346777888999


Q ss_pred             EEEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          241 VKCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       241 V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      |.+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+......+....+....+.+++++||+..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            9999999999888874  69999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC-----CCEEEEEcCC--CEEEEECCC
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT-----EDCFASASAE--NIKKFNLPK  373 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~-----~~~l~~~~~~--~i~i~d~~~  373 (485)
                      ++  +.|++||+++++.+..|++|.++|+++.|..+     |.++.+....  .+.+|-...
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            87  58999999999999999999999999999876     6677665443  377776543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=6.7e-13  Score=117.81  Aligned_cols=155  Identities=16%  Similarity=0.265  Sum_probs=114.6

Q ss_pred             EEEEEccCCCEEEEEeC---C-------CeEEEEECCC-CceEEEEcc-cccCEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 011457          179 RSVAFDHSNTWFCTGSA---D-------RTIKIWDVAK-GTLKLTLTG-HIEQVRGLAVSSKHTYMFSA--GDDKQVKCW  244 (485)
Q Consensus       179 ~~l~~sp~~~~l~tgs~---d-------g~I~iwd~~~-~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~--~~dg~V~iw  244 (485)
                      ..+.|+++|++|+.-..   |       +...||.++. +.....+.- ..++|.+++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35778999987765433   1       3455555522 233333332 34579999999999987654  357799999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      |++ ++.+..+.  ...+..+.|+|+|++|++++.+   |.|.+||+++.+.+.... | ..++.+.|+|+|++|+++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            996 67777764  4677899999999999998754   679999999888887765 3 34789999999999998875


Q ss_pred             ------CCCEEEEECCCCeEEeEe
Q 011457          322 ------DSTIKFWDLRYGKTMLTL  339 (485)
Q Consensus       322 ------dg~I~iwd~~~~~~~~~~  339 (485)
                            |..++||+.. |+.+...
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEec-CeEeEec
Confidence                  7889999985 6665543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.3e-12  Score=129.95  Aligned_cols=205  Identities=9%  Similarity=-0.007  Sum_probs=147.6

Q ss_pred             eEEEEecCCcceEEEEEccCCCEEEEEeC---CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCc--
Q 011457          167 CYRVISGHLGWVRSVAFDHSNTWFCTGSA---DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQ--  240 (485)
Q Consensus       167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~--  240 (485)
                      ..+.+..|...|.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+...+|+|+|+.|+ +.+.++.  
T Consensus       193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~  271 (435)
T PRK05137        193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD  271 (435)
T ss_pred             CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence            34556788899999999999999888764   468999999888654 4455666778899999998775 5555554  


Q ss_pred             EEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457          241 VKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       241 V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  317 (485)
                      |.+||+.+++. ..+..+........|+|||+.|+..+. +|  .|++||+.++.. ..+..+...+....|+|+|+.|+
T Consensus       272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             EEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEE
Confidence            77779887765 445556666778999999998887764 33  688889876654 34443455677789999999998


Q ss_pred             EEeCC---CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-------CEEEEECCCCce
Q 011457          318 TGSHD---STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-------NIKKFNLPKGEF  376 (485)
Q Consensus       318 s~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-------~i~i~d~~~~~~  376 (485)
                      ..+.+   ..|.+||+..+.. ..+.. ...+....|+|||+.++..+..       .++++++..+..
T Consensus       350 ~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            77654   3588889765443 33332 2356788999999988765432       367777765543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=7.9e-13  Score=119.73  Aligned_cols=242  Identities=15%  Similarity=0.251  Sum_probs=171.0

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----eEEEEcccc------------cCEEEEEEcCCCC--EEEE
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-----LKLTLTGHI------------EQVRGLAVSSKHT--YMFS  234 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~------------~~V~~l~~s~~~~--~l~s  234 (485)
                      ..+-|.+|.|...|++||||..+|.|.++.-....     ....++.|.            ..|..+.|.++++  .++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            35678999999999999999999999999753322     233344443            4688899998664  5667


Q ss_pred             EeCCCcEEEEECCCCee-----------------------------------EEEe-cccCCceEEEEEecCCCEEEEEE
Q 011457          235 AGDDKQVKCWDLEQNKV-----------------------------------IRSY-HGHLSGVYCLGLHPTIDILLTGG  278 (485)
Q Consensus       235 ~~~dg~V~iwd~~~~~~-----------------------------------~~~~-~~h~~~v~~l~~~~~~~~l~sg~  278 (485)
                      .+.|.+|++|.+.....                                   .+.+ ..|.--|.++.++.|...++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            77999999998743211                                   0111 3577789999999998888775 


Q ss_pred             CCCcEEEEECCCCceEE---EeccC-----CccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEe------E-----
Q 011457          279 RDSVCRVWDIRTKMQIF---ALAGH-----DNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTML------T-----  338 (485)
Q Consensus       279 ~dg~i~iwd~~~~~~~~---~~~~~-----~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~------~-----  338 (485)
                      .|=.|.+|+++--....   .++.+     ...|++..|+|. .+.++-.+..|+|++-|++.....-      .     
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            47789999987443322   23322     346888899995 5678888899999999998532211      0     


Q ss_pred             -----eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc-eeeeeccCCc------------cc---EEEEEeCCCC
Q 011457          339 -----LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE-FLHNMLSQQK------------TI---INSMAVNEEG  397 (485)
Q Consensus       339 -----~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~-~~~~~~~~~~------------~~---i~~~~~~~~~  397 (485)
                           +..--..|..+.|+++|+++++-..-.+++||++... .+..+ .-|.            ..   -..++|+.++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETY-PVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEE-eehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                 1112246889999999999999888889999996443 33332 2221            11   2346677777


Q ss_pred             -eEEEEeCCCcEEEEeCCCCc
Q 011457          398 -VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       398 -~l~sg~~dg~I~iwd~~~~~  417 (485)
                       ++++|+.+...++|+...|.
T Consensus       342 ~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             ceEecccccceEEEecCCCCc
Confidence             99999999999999966553

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=8.1e-13  Score=127.01  Aligned_cols=280  Identities=15%  Similarity=0.202  Sum_probs=200.3

Q ss_pred             CCcceeecccCCCCccc-ccccccCCCCCCCCCCCCCCcceEEEEecCCc--ceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          128 KSSAIVSTSASSERNLS-TSAIMERIPSKWPRPEWHAPWKCYRVISGHLG--WVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~-~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~--~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ++.+-.....+++|.++ +++.-.+.+..+....      +...+.-|.+  .|.-.-++.|-.-++.-..|++|-+...
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            34444555677888864 5555565556554432      2233444543  3444445555555666667777766542


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                       -|. ...+. -...-..++++.-..-|++++....|+-+++++|+.+..|....+.++++..++...+|++|+.+|.|.
T Consensus       124 -~G~-hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE  200 (703)
T KOG2321|consen  124 -YGR-HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE  200 (703)
T ss_pred             -cCe-eeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence             221 11111 122335666665444466666677899999999999999988889999999999999999999999999


Q ss_pred             EEECCCCceEEEecc------CCc-----cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCCceEEEEEC
Q 011457          285 VWDIRTKMQIFALAG------HDN-----TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALH  352 (485)
Q Consensus       285 iwd~~~~~~~~~~~~------~~~-----~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~  352 (485)
                      +||.++...+..+..      |.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.+ ..-+|..+.|.
T Consensus       201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~  280 (703)
T KOG2321|consen  201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ  280 (703)
T ss_pred             EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence            999998877666542      222     499999999999999999999999999999888765443 34589999997


Q ss_pred             CC--CCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457          353 PT--EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       353 p~--~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~  418 (485)
                      +.  +..+++....-+++||-.+|+....+..  ...++.+++-|++ +++++-.++.+..|=+..-.+
T Consensus       281 ~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  281 DTDQQNKVVSMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP  347 (703)
T ss_pred             ccCCCceEEecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence            76  5567776666699999999998877533  3337888877776 999999999988887665433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1.9e-12  Score=124.05  Aligned_cols=316  Identities=16%  Similarity=0.198  Sum_probs=215.6

Q ss_pred             ccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCC-----------CeEEEEEC
Q 011457          136 SASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD-----------RTIKIWDV  204 (485)
Q Consensus       136 ~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d-----------g~I~iwd~  204 (485)
                      .+||.|.+++|-- .+-+..|-.++|.    .++.+ .| -.|.-+.|||+.+||+|-+..           ..++|||+
T Consensus       217 ~wSP~GTYL~t~H-k~GI~lWGG~~f~----r~~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  217 RWSPKGTYLVTFH-KQGIALWGGESFD----RIQRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             EecCCceEEEEEe-ccceeeecCccHH----HHHhc-cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            4788888887754 3445678776643    33322 23 358889999999999998642           57999999


Q ss_pred             CCCceEEEEccccc---CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC--
Q 011457          205 AKGTLKLTLTGHIE---QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR--  279 (485)
Q Consensus       205 ~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--  279 (485)
                      .+|.+...|....+   .-.-..||.|++|+|.-.. ..|.||+..+-.++..-.-.-..|....|+|.+++|+-=..  
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence            99999888765222   2234689999999998776 56999988765444333334577899999999888875433  


Q ss_pred             ---CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCCEEEEECCCCeEEeEeccCCCce
Q 011457          280 ---DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS----------HDSTIKFWDLRYGKTMLTLTHHKKSV  346 (485)
Q Consensus       280 ---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~~~~v  346 (485)
                         -..+.+..+.+++.+.+..-+.-.-+.+.|..+|.+|+.--          .-..+.|+.++........-.....|
T Consensus       369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v  448 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV  448 (698)
T ss_pred             cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence               24577778888877777666666667788888998887532          12235666666544333333346778


Q ss_pred             EEEEECCCCCEEEEEcCCC----EEEEECCC-CceeeeeccCCcccEEEEEeCCCC-eEEE---EeCCCcEEEEeCCCCc
Q 011457          347 RAMALHPTEDCFASASAEN----IKKFNLPK-GEFLHNMLSQQKTIINSMAVNEEG-VLAT---GGDNGSLWFWDWKSGH  417 (485)
Q Consensus       347 ~~l~~~p~~~~l~~~~~~~----i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~l~s---g~~dg~I~iwd~~~~~  417 (485)
                      ...+|-|.|..|++-+.+.    +.+|..++ .....-+..-.....+.+.|+|.| +++.   ++..|.+.++|.....
T Consensus       449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~  528 (698)
T KOG2314|consen  449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD  528 (698)
T ss_pred             eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence            9999999999888766542    88887763 222222222234567899999999 4444   3457999999987422


Q ss_pred             ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC------CCcEEEecCCCCC
Q 011457          418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA------DKTIKMWREDETA  467 (485)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~------Dg~I~iW~~~~~~  467 (485)
                      ....       ++..| ...+.+.|+|.|+|++|++.      |.--+||++....
T Consensus       529 ~k~~-------~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  529 LKDT-------ASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             hhhc-------cCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence            2111       11122 34677899999999999875      5557788887654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=1.9e-10  Score=112.27  Aligned_cols=271  Identities=14%  Similarity=0.198  Sum_probs=177.2

Q ss_pred             EEEEeCC----CeEEEEEC--CCCceEEEE-cccccCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--e--eEEE
Q 011457          190 FCTGSAD----RTIKIWDV--AKGTLKLTL-TGHIEQVRGLAVSSKHTYMFSAGD----DKQVKCWDLEQN--K--VIRS  254 (485)
Q Consensus       190 l~tgs~d----g~I~iwd~--~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~----dg~V~iwd~~~~--~--~~~~  254 (485)
                      +++|+..    +.|.+|++  .++++...- .........++++|++++|+++.+    ++.|..|++...  +  .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4556665    68999888  455443221 123455677899999999999877    579999998764  2  3334


Q ss_pred             ecccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCC-ceEEE---ec----------cCCccEEEEEEcCCCCEEEEE
Q 011457          255 YHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTK-MQIFA---LA----------GHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       255 ~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~-~~~~~---~~----------~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      ..........++++|++++|+++.. +|.|.++++... .....   +.          .......++.++|+++++++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            4334456678999999999999875 899999999873 32222   11          123456789999999988876


Q ss_pred             eC-CCCEEEEECCCCe--E--EeEe-ccCCCceEEEEECCCCCEEEEEcCCC--EEEEECC--CCce--eeeecc---C-
Q 011457          320 SH-DSTIKFWDLRYGK--T--MLTL-THHKKSVRAMALHPTEDCFASASAEN--IKKFNLP--KGEF--LHNMLS---Q-  383 (485)
Q Consensus       320 s~-dg~I~iwd~~~~~--~--~~~~-~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~--~~~~--~~~~~~---~-  383 (485)
                      .. ...|.+|++....  .  ...+ ......-+.+.|+|+++++.+.....  |.++++.  ++..  +..+..   . 
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence            54 3479999987654  2  1222 23456789999999999887776543  8888877  4432  222211   1 


Q ss_pred             -CcccEEEEEeCCCC-eEEE-EeCCCcEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-CCCcE
Q 011457          384 -QKTIINSMAVNEEG-VLAT-GGDNGSLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-ADKTI  458 (485)
Q Consensus       384 -~~~~i~~~~~~~~~-~l~s-g~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I  458 (485)
                       .......+.++|++ +|++ ....+.|.+|++.. ...+........     ....-..+.++|+|++|+++. .++.|
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~~g~~l~Va~~~s~~v  316 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSPDGRYLYVANQDSNTV  316 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeCCCCEEEEEecCCCeE
Confidence             11257889999999 4444 44567899999942 223333333221     123478999999999999887 56799


Q ss_pred             EEecCCC
Q 011457          459 KMWREDE  465 (485)
Q Consensus       459 ~iW~~~~  465 (485)
                      .+|+++.
T Consensus       317 ~vf~~d~  323 (345)
T PF10282_consen  317 SVFDIDP  323 (345)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            9998853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=3.6e-12  Score=113.11  Aligned_cols=153  Identities=16%  Similarity=0.275  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCcEEEEECCC-CeeEEEecc-cCCceEEEEEecCCCEEEEE--ECCCcEEEE
Q 011457          221 RGLAVSSKHTYMFSAGD----------DKQVKCWDLEQ-NKVIRSYHG-HLSGVYCLGLHPTIDILLTG--GRDSVCRVW  286 (485)
Q Consensus       221 ~~l~~s~~~~~l~s~~~----------dg~V~iwd~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~l~sg--~~dg~i~iw  286 (485)
                      ..+.|+++|.+|++-..          -+...+|.++. +..+..+.- ..++|.+++|+|+|+.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46788999987765432          13455565522 233444432 34579999999999976554  457899999


Q ss_pred             ECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC---CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC
Q 011457          287 DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD---STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       287 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                      |++ ++.+..+.  ...+..+.|+|+|++|++++.+   |.|.+||.++.+.+.....  ..+..++|+|+|++|+++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence            997 66666664  5678899999999999998754   6699999998888877653  34789999999999998864


Q ss_pred             -------CCEEEEECCCCceeee
Q 011457          364 -------ENIKKFNLPKGEFLHN  379 (485)
Q Consensus       364 -------~~i~i~d~~~~~~~~~  379 (485)
                             +++++|+.. |+.+.+
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             ccceeccccEEEEEec-CeEeEe
Confidence                   348999984 655544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.50  E-value=7.8e-12  Score=128.28  Aligned_cols=149  Identities=25%  Similarity=0.479  Sum_probs=129.3

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-EecccC
Q 011457          181 VAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR-SYHGHL  259 (485)
Q Consensus       181 l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~-~~~~h~  259 (485)
                      +-++++.-++++|+.-+.|.+|+....+....+.+|.+.|.++.|+.+|.+++++++|.++++|++++.+... ..-+|.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            3356677799999999999999987544445689999999999999999999999999999999999998776 556899


Q ss_pred             CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 011457          260 SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       260 ~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~  332 (485)
                      ..|+.+.|+|+  .+++++.|.+.++|+.+ ++....+.+|. ..+..+...++...+++++.||.+++||+..
T Consensus       219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99999999997  89999999999999765 44455677665 4789999999999999999999999999753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.50  E-value=1.6e-11  Score=116.75  Aligned_cols=327  Identities=14%  Similarity=0.163  Sum_probs=223.3

Q ss_pred             cceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCC------------
Q 011457          130 SAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADR------------  197 (485)
Q Consensus       130 ~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg------------  197 (485)
                      -.+....+||.|.++++.-. .-+..|..|.+.   ++.+.   -...|..+.|+|.++||.|-+..+            
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~---~l~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA---KLVRF---RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             cchhheeecCcchheehhhc-cceEEccccchh---heeee---ecCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence            34455678888888876544 345677776654   33332   246799999999999999986543            


Q ss_pred             ---eEEEEECCCCceEEEEcccccC--EE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc-cCCceEEEEEecC
Q 011457          198 ---TIKIWDVAKGTLKLTLTGHIEQ--VR-GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG-HLSGVYCLGLHPT  270 (485)
Q Consensus       198 ---~I~iwd~~~~~~~~~~~~h~~~--V~-~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~  270 (485)
                         .+.+||+.++.++..+.....+  .. -+.|+.+..|++=. ....++|+++..+-....+.. ....|....|+|.
T Consensus       106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence               4999999999999999876665  44 68899888887654 335699999722221111211 1356888899996


Q ss_pred             CC--EEEE-----EECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-----------CCCCEEEEECCC
Q 011457          271 ID--ILLT-----GGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-----------HDSTIKFWDLRY  332 (485)
Q Consensus       271 ~~--~l~s-----g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-----------~dg~I~iwd~~~  332 (485)
                      ++  .|+.     .+.++.+++|.+..+..+.+-.-....-..+.|++.|+++++--           ....++++++..
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence            43  3443     45688999999987766655443444556788898888765421           134678888874


Q ss_pred             CeEEeEeccCCCceEEEEECCCCCEEEEEcCC---CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC---C
Q 011457          333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAE---NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD---N  405 (485)
Q Consensus       333 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~---d  405 (485)
                      ... .......++|...+|.|.++.|++.+.-   .+.++|++.+ ....+   ....-+.+.|+|.+ +++.++-   .
T Consensus       265 ~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~rNT~~fsp~~r~il~agF~nl~  339 (561)
T COG5354         265 RSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQKRNTIFFSPHERYILFAGFDNLQ  339 (561)
T ss_pred             ccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcccccccccCcccEEEEecCCccc
Confidence            333 3333557899999999999888877632   3888998776 33332   33345678899988 6655443   3


Q ss_pred             CcEEEEeCCCCcccc-cceeeeccCCCCCCccEEEEEEccCCCEEEEEE------CCCcEEEecCCCCCCCCCCCCCCCC
Q 011457          406 GSLWFWDWKSGHNFQ-QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE------ADKTIKMWREDETATPETHPLNFKP  478 (485)
Q Consensus       406 g~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~------~Dg~I~iW~~~~~~~~~~~~~~~~p  478 (485)
                      |.|.+||........ .+.          .....-+.|+|||+++.+..      .|..|+||++.....-+...+.|.|
T Consensus       340 gni~i~~~~~rf~~~~~~~----------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p  409 (561)
T COG5354         340 GNIEIFDPAGRFKVAGAFN----------GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDP  409 (561)
T ss_pred             cceEEeccCCceEEEEEee----------cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhhhhhhccccC
Confidence            889999987643332 111          22345567999999988764      4789999999887766666677776


Q ss_pred             C
Q 011457          479 P  479 (485)
Q Consensus       479 ~  479 (485)
                      +
T Consensus       410 ~  410 (561)
T COG5354         410 S  410 (561)
T ss_pred             C
Confidence            4

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.49  E-value=2.7e-10  Score=108.88  Aligned_cols=268  Identities=13%  Similarity=0.085  Sum_probs=174.8

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEecccC-------
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD----------DKQVKCWDLEQNKVIRSYHGHL-------  259 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~V~iwd~~~~~~~~~~~~h~-------  259 (485)
                      +.|.+.|..+++.+.++..-..+- .+ ++|+++.|+++..          +..|.+||..+++.+..+....       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            789999999999998887544333 34 9999998887765          7899999999999998886322       


Q ss_pred             CceEEEEEecCCCEEEEEE-C-CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC-CeEE
Q 011457          260 SGVYCLGLHPTIDILLTGG-R-DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY-GKTM  336 (485)
Q Consensus       260 ~~v~~l~~~~~~~~l~sg~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~-~~~~  336 (485)
                      .....++++|||++|++.. . +..|.+.|+.+++.+..+.- .+...-...+++..+  +-+.||......+.. ++..
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK  181 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence            2334789999999998776 3 68999999999999888763 222222222222222  223455544433322 2211


Q ss_pred             -eE---eccCCCceE-EEEECC-CCCEEEEEcCCCEEEEECCCCc-----eeeeeccC------CcccEEEEEeCCCC-e
Q 011457          337 -LT---LTHHKKSVR-AMALHP-TEDCFASASAENIKKFNLPKGE-----FLHNMLSQ------QKTIINSMAVNEEG-V  398 (485)
Q Consensus       337 -~~---~~~~~~~v~-~l~~~p-~~~~l~~~~~~~i~i~d~~~~~-----~~~~~~~~------~~~~i~~~~~~~~~-~  398 (485)
                       ..   +.....++. .-.|.+ +|.++.....+.+.+.|+....     ....+...      ....+.-+++++++ .
T Consensus       182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~  261 (352)
T TIGR02658       182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR  261 (352)
T ss_pred             EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence             11   111000000 003344 8888888888779999964432     22211111      12334459999988 5


Q ss_pred             EEEEe----------CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEE-CCCcEEEecCCCC
Q 011457          399 LATGG----------DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCE-ADKTIKMWREDET  466 (485)
Q Consensus       399 l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~-~Dg~I~iW~~~~~  466 (485)
                      +++..          ..+.|.++|..+++.+..+..         ...+..+++++||+ +|++.. .++.|.+.|..+.
T Consensus       262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            55432          125799999999988777653         44688999999999 887666 6889999999988


Q ss_pred             CCCCCC-CCCCCC
Q 011457          467 ATPETH-PLNFKP  478 (485)
Q Consensus       467 ~~~~~~-~~~~~p  478 (485)
                      ...... ++.-.|
T Consensus       333 k~i~~i~~vg~~P  345 (352)
T TIGR02658       333 KELSSVNQLGRGP  345 (352)
T ss_pred             eEEeeeccCCCCC
Confidence            766655 444333

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=2e-11  Score=122.87  Aligned_cols=193  Identities=13%  Similarity=0.036  Sum_probs=138.4

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEE-EeCCC--cE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS-AGDDK--QV  241 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg--~V  241 (485)
                      .+.+..+...+.+.+|+|+|++|+.++.+   ..|++||+.+++... +..+...+.+++|+|+++.|+. .+.++  .|
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence            35555677789999999999999887654   489999998886543 3335566778999999987764 44444  58


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      .+||+.++... .+..+........|+|+++.|+..+. ++  .|.++|+.+++. ..+..+...+..+.|+|++++++.
T Consensus       261 ~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~  338 (417)
T TIGR02800       261 YVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAF  338 (417)
T ss_pred             EEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEE
Confidence            89999877543 34335455567789999998876654 33  588888877654 344445566778899999999998


Q ss_pred             EeCCC---CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          319 GSHDS---TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       319 ~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      ++.++   .|.+||+.++... .+... .......|+|++..|+..+.++
T Consensus       339 ~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       339 VHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            88776   7899999875443 23222 2345568999999887766543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=8e-12  Score=123.00  Aligned_cols=279  Identities=15%  Similarity=0.179  Sum_probs=196.8

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---------------eEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---------------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---------------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  238 (485)
                      ......|++|+....++|.|+.||.++|-.+.+..               .-.++.||...|.-+.|+.+.+.|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            35667899999999999999999999999875432               234678999999999999999999999999


Q ss_pred             CcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE
Q 011457          239 KQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  316 (485)
                      |.|.+|-+-.+......  ....+.|.+++|+.+|..+.....||.|.+=.++..+ ++.-.-.......+.|++|.+.+
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHH
Confidence            99999999887654433  2355779999999999999999999999887776432 32211122334578899999999


Q ss_pred             EEEeCCCCEEEEECCCC-------eEEeE----eccCCCceEEEEEC--------CCCCEEEEEcCCC-EEEEECCCCce
Q 011457          317 VTGSHDSTIKFWDLRYG-------KTMLT----LTHHKKSVRAMALH--------PTEDCFASASAEN-IKKFNLPKGEF  376 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~-------~~~~~----~~~~~~~v~~l~~~--------p~~~~l~~~~~~~-i~i~d~~~~~~  376 (485)
                      +.+-.+|.+.+||....       .+...    +......|..+.|.        |+...|+.+-.++ +.+..-.+...
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence            99999999999997532       11111    12222335566663        5778888888877 55544333332


Q ss_pred             eeeeccCCcccEEEEEeCCCC-eEEEEeCC---------CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC
Q 011457          377 LHNMLSQQKTIINSMAVNEEG-VLATGGDN---------GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG  446 (485)
Q Consensus       377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  446 (485)
                      ...+  .....+....|+++| +|++++.+         +.|.+|. .-|+.+..++.        ....|++++|-..|
T Consensus       252 Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv--------pg~~It~lsWEg~g  320 (1189)
T KOG2041|consen  252 PVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV--------PGSCITGLSWEGTG  320 (1189)
T ss_pred             CeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec--------CCceeeeeEEcCCc
Confidence            2222  223667888999999 88877754         3566664 33444444443        45679999998888


Q ss_pred             CEEEEEECCCcEEEecCCC
Q 011457          447 SRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       447 ~~L~s~~~Dg~I~iW~~~~  465 (485)
                      -+++.+ .|+.|++=++.+
T Consensus       321 LriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  321 LRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             eEEEEE-ecceEEEEeecc
Confidence            776654 456666555443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=4.1e-13  Score=128.35  Aligned_cols=285  Identities=15%  Similarity=0.223  Sum_probs=190.2

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC-------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ  240 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  240 (485)
                      +..+.||+..|+.++--.+.+-|++++.|.+|++|.++.       ..+..++..|..+|.++.|-.+.++++++  ||-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            345779999999998777788899999999999999853       24677889999999999999998888876  788


Q ss_pred             EEEEECCCCeeEEEec--ccCCceEEEEEecC--CCEEEEE-ECCCcEEEEECCCCceEEEec-----cCCccEEEEEEc
Q 011457          241 VKCWDLEQNKVIRSYH--GHLSGVYCLGLHPT--IDILLTG-GRDSVCRVWDIRTKMQIFALA-----GHDNTVCSVFTR  310 (485)
Q Consensus       241 V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~--~~~l~sg-~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~~  310 (485)
                      |.+||.--++.+....  ...+.+..+..-++  ..+++.| +...+|+++|.+..+-...++     +....+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999988777665432  11222333333333  3344444 778999999999877665554     345678999999


Q ss_pred             CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-CEEE-EECCCCceeeeeccCCcccE
Q 011457          311 PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKK-FNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       311 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i-~d~~~~~~~~~~~~~~~~~i  388 (485)
                      +.|++++++-.+|+|.+.|.++|+.+..+.........++- |..+.++....+ .+.+ |..-++....+........ 
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepa-  963 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA-  963 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch-
Confidence            99999999999999999999999998877765554444443 334444444333 4666 6665554443322111110 


Q ss_pred             EEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457          389 NSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM  460 (485)
Q Consensus       389 ~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i  460 (485)
                      .  ....-| .|++......+.+|-- .++. .....+.....-...+..++++--|-..-+..|...|.|.+
T Consensus       964 h--flqsvgpSLV~a~~Gn~lgVYad-~a~~-ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  964 H--FLQSVGPSLVTAQNGNILGVYAD-SAEL-HAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             h--hhhccCceeEEeccCcEEEEEec-chhh-hhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            0  011112 4666666667777742 2211 11111111111223455778888887777888888888875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=1.6e-09  Score=105.80  Aligned_cols=244  Identities=12%  Similarity=0.146  Sum_probs=162.2

Q ss_pred             CcceEEEEEccCCCEEEEEeC----CCeEEEEECCCC--ce--EEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSA----DRTIKIWDVAKG--TL--KLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWD  245 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~----dg~I~iwd~~~~--~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd  245 (485)
                      ......++++|++++|.+...    ++.|..|++...  ++  +............++++|++++|+++. .+|.|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            344566889999999998876    478999988764  33  333332345567899999999999887 489999999


Q ss_pred             CCC-CeeEEE---ec----------ccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCc--eE--EEec-cCCccEE
Q 011457          246 LEQ-NKVIRS---YH----------GHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKM--QI--FALA-GHDNTVC  305 (485)
Q Consensus       246 ~~~-~~~~~~---~~----------~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~--~~--~~~~-~~~~~v~  305 (485)
                      +.. +.....   +.          .......++.++|+++++++... ...|.+|++....  ..  ..+. .....-.
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            987 433222   21          12345789999999998887654 4479999997655  21  2222 3456788


Q ss_pred             EEEEcCCCCEEEEEe-CCCCEEEEECC--CCeE--EeEeccC------CCceEEEEECCCCCEEEEEcCCC--EEEEECC
Q 011457          306 SVFTRPTDPQVVTGS-HDSTIKFWDLR--YGKT--MLTLTHH------KKSVRAMALHPTEDCFASASAEN--IKKFNLP  372 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s-~dg~I~iwd~~--~~~~--~~~~~~~------~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~  372 (485)
                      .+.|+|+++++++.. .++.|.+|++.  .+..  +..+...      ......|.++|+|++|.++..+.  |.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999999999886654 56789999988  4432  2222211      12578899999999988877654  9999983


Q ss_pred             --CCce--eeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeC--CCCccc
Q 011457          373 --KGEF--LHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDW--KSGHNF  419 (485)
Q Consensus       373 --~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~--~~~~~~  419 (485)
                        +++.  +..+ .........+.++++| +|+++. .++.|.+|++  ++|...
T Consensus       276 ~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  276 PATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             TTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             cCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence              3333  2222 2234457899999999 666555 6679999976  455443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.42  E-value=1.8e-10  Score=114.30  Aligned_cols=267  Identities=15%  Similarity=0.159  Sum_probs=174.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEE
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL  265 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l  265 (485)
                      .+..+++++.+|.|..+|..+|+.+...............  ++..+++++.+|.+..+|.++|+.+...... ..+.+.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~  140 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSP  140 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecC
Confidence            3667888889999999999999988776644322222222  4667888889999999999999998876532 223221


Q ss_pred             EEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-----EEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec
Q 011457          266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-----CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT  340 (485)
Q Consensus       266 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  340 (485)
                      -.. .++.++.++.+|.|..||.++++.+.........+     .+....  +..++.+..+|.+..+|.++|+.+....
T Consensus       141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             CEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            111 24577788889999999999999888776433221     111222  3477888889999999999998776543


Q ss_pred             cCCC----c------e-EEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457          341 HHKK----S------V-RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW  409 (485)
Q Consensus       341 ~~~~----~------v-~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~  409 (485)
                      ....    .      + ....+ .++..+++...+.++.||..+|+.+......   ....... .++.+++++.+|.|+
T Consensus       218 ~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~-~~~~vyv~~~~G~l~  292 (377)
T TIGR03300       218 VALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV-DDNRLYVTDADGVVV  292 (377)
T ss_pred             cccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE-eCCEEEEECCCCeEE
Confidence            2110    0      0 01111 1333444444445999999999887765321   1122222 244788888999999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH  472 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~  472 (485)
                      .+|..+|+.+......      . .........  .+..|++++.||.|++++..+++.....
T Consensus       293 ~~d~~tG~~~W~~~~~------~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       293 ALDRRSGSELWKNDEL------K-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL  346 (377)
T ss_pred             EEECCCCcEEEccccc------c-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            9999999866543211      0 011122222  3678999999999999999887755433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.7e-10  Score=116.29  Aligned_cols=231  Identities=16%  Similarity=0.082  Sum_probs=145.7

Q ss_pred             eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE
Q 011457          198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-D--KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL  274 (485)
Q Consensus       198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d--g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  274 (485)
                      .|.++|...... ..+..+...+.+..|+|||+.|+..+. +  ..|.+||+.+++... +...........|+|||+.|
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            677778654443 445556778899999999998887653 2  368899998876533 22223334578999999977


Q ss_pred             EE-EECCCc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC--CEEEEECCCCeEEeEeccCCCceEE
Q 011457          275 LT-GGRDSV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS--TIKFWDLRYGKTMLTLTHHKKSVRA  348 (485)
Q Consensus       275 ~s-g~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~  348 (485)
                      +. .+.+|.  |+++|+.+++. ..+..+........|+|+++.++..+. ++  .|.++|+.+++... +.........
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~  354 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLG  354 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcC
Confidence            64 566664  78888887754 445545556778899999998876654 34  46667887766433 2222223345


Q ss_pred             EEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEE-EEeCCCc--EEEEeCCCCcccc
Q 011457          349 MALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLA-TGGDNGS--LWFWDWKSGHNFQ  420 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-sg~~dg~--I~iwd~~~~~~~~  420 (485)
                      ..|+|+|++++..+...    |.++|+.+++... +....  ......|+|+| .|+ +...+|.  +++++.. |....
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~  430 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA  430 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence            78999999887765432    6778888776432 22211  12234799999 444 4444443  6777763 43333


Q ss_pred             cceeeeccCCCCCCccEEEEEEcc
Q 011457          421 QAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       421 ~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                      .+..        +.+.+...+|+|
T Consensus       431 ~l~~--------~~g~~~~p~Wsp  446 (448)
T PRK04792        431 RLPA--------GQGEVKSPAWSP  446 (448)
T ss_pred             ECcC--------CCCCcCCCccCC
Confidence            3221        233455666765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.4e-10  Score=117.18  Aligned_cols=221  Identities=10%  Similarity=-0.018  Sum_probs=145.3

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCC--cE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDK--QV  241 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg--~V  241 (485)
                      .+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|+|+.|+ +...+|  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            34555677889999999999999877644   379999998886543 333344556789999999877 444455  68


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      .+||+.+++.. .+..+........|+|||+.|+..+. +|  .|+++|+.+++... +...........|+|++++++.
T Consensus       270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence            88899887654 34445556677899999997776654 33  57778887776433 2222233446789999999887


Q ss_pred             EeCC-C--CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEE
Q 011457          319 GSHD-S--TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       319 ~s~d-g--~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      .+.+ +  .|.+||+.+++.. .+.. ........|+|+|+.++..+..+    +.+++... .....+ ....+.+...
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l-~~~~g~~~~p  423 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPL-PTAQGEVREP  423 (430)
T ss_pred             EEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEC-cCCCCCcCCC
Confidence            7653 3  4888999887643 3322 12223568999999888766442    66777643 333232 2233334444


Q ss_pred             EeCC
Q 011457          392 AVNE  395 (485)
Q Consensus       392 ~~~~  395 (485)
                      +|+|
T Consensus       424 ~ws~  427 (430)
T PRK00178        424 SWSP  427 (430)
T ss_pred             ccCC
Confidence            5554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.41  E-value=7.7e-12  Score=113.45  Aligned_cols=285  Identities=19%  Similarity=0.275  Sum_probs=188.6

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC--
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--  205 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~--  205 (485)
                      +.+.+.....-+..+-+.+.+.|+.+++|-+-+-..-|..+..  .-..+++++.+.++...|+.|-.+|++.-+.+.  
T Consensus        23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed  100 (404)
T KOG1409|consen   23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED  100 (404)
T ss_pred             chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence            3444444444444444566778888999977665555544432  235678999999999999999999999988764  


Q ss_pred             --CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC------------------------------------
Q 011457          206 --KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE------------------------------------  247 (485)
Q Consensus       206 --~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~------------------------------------  247 (485)
                        +....+....|...|..+-|+.....+++.+.|..+.---.+                                    
T Consensus       101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l  180 (404)
T KOG1409|consen  101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML  180 (404)
T ss_pred             hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence              334445566788888888888777777777766544221111                                    


Q ss_pred             -----CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc-eEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          248 -----QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-QIFALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       248 -----~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                           .-..+.++.+|.+.+++++|.+....|++|..|..+.+||+--++ ....+.+|...|..+...+.-..+++++.
T Consensus       181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~e  260 (404)
T KOG1409|consen  181 KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGE  260 (404)
T ss_pred             EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccC
Confidence                 112456678899999999999999999999999999999997544 45677899999999998888899999999


Q ss_pred             CCCEEEEECCCCeEEeE----------e------------------------ccCCCceEEEEECCCCCEEEEEcCCCEE
Q 011457          322 DSTIKFWDLRYGKTMLT----------L------------------------THHKKSVRAMALHPTEDCFASASAENIK  367 (485)
Q Consensus       322 dg~I~iwd~~~~~~~~~----------~------------------------~~~~~~v~~l~~~p~~~~l~~~~~~~i~  367 (485)
                      ||.|.+||.+.......          .                        +.....|...+-+....+...+..-.++
T Consensus       261 dg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR  340 (404)
T KOG1409|consen  261 DGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVR  340 (404)
T ss_pred             CCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEE
Confidence            99999999875432110          0                        0001111111111111122222222244


Q ss_pred             EEECCC-------CceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          368 KFNLPK-------GEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       368 i~d~~~-------~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      +.|.-.       ...+... ......|+.+.+...- .|++++.|..|+|||+++
T Consensus       341 ~~~~c~~~i~~~~~t~LA~p-hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  341 VCDSCYPTIKDEERTPLAIP-HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             EecccchhhhcCCCCccccc-cccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            433211       1112111 1223457888887765 999999999999999874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=1.6e-10  Score=116.41  Aligned_cols=211  Identities=16%  Similarity=0.083  Sum_probs=143.5

Q ss_pred             CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCCC
Q 011457          196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID  272 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~  272 (485)
                      ...|.++|..... ...+..+...+...+|+|++++|+.+..+   ..|++||+.+++.... ..+...+.+++|+|+++
T Consensus       169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC
Confidence            3468888875443 44455566778999999999999887644   4899999998865433 33556677899999998


Q ss_pred             EEEE-EECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC-C--CEEEEECCCCeEEeEeccCCCce
Q 011457          273 ILLT-GGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-S--TIKFWDLRYGKTMLTLTHHKKSV  346 (485)
Q Consensus       273 ~l~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~~~~v  346 (485)
                      .|+. .+.++  .|++||+.++.. ..+..+........|+|++++|+..+.. +  .|.++|+.+++. ..+..+...+
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~  324 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYN  324 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCc
Confidence            7764 44444  588999987754 3444455555677899999988766543 3  588888876654 3344445567


Q ss_pred             EEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC---cEEEEeC
Q 011457          347 RAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG---SLWFWDW  413 (485)
Q Consensus       347 ~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg---~I~iwd~  413 (485)
                      ....|+|++.+++.++.+    .|.+||+.++... .+.. . .......|++++ .|+..+.++   .+++.+.
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-T-GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-C-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            788999999988887665    3888998876532 2221 1 123455789998 565555543   3555553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.7e-10  Score=115.04  Aligned_cols=210  Identities=13%  Similarity=0.072  Sum_probs=139.8

Q ss_pred             eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE
Q 011457          198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL  274 (485)
Q Consensus       198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  274 (485)
                      .|.++|...+. ...+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            57888876554 34455577789999999999998876543   369999998886543 32233445678999999977


Q ss_pred             EE-EECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC--CEEEEECCCCeEEeEeccCCCceEE
Q 011457          275 LT-GGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS--TIKFWDLRYGKTMLTLTHHKKSVRA  348 (485)
Q Consensus       275 ~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~  348 (485)
                      +. ...+|  .|++||+.+++. ..+..+........|+|+++.++..+. +|  .|.++|+.+++... +.........
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~  335 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNAR  335 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccc
Confidence            64 44455  588889988764 345555556677899999998876654 33  57777887776433 2222233445


Q ss_pred             EEECCCCCEEEEEcCC-C---EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe-CCC--cEEEEeCC
Q 011457          349 MALHPTEDCFASASAE-N---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG-DNG--SLWFWDWK  414 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~-~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg--~I~iwd~~  414 (485)
                      ..|+|++..++..+.. +   |.++|+.+++... +...  .......|+|+| .++..+ .+|  .|+++++.
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            7899999998877643 2   8889998876432 2221  122245799999 444443 333  46666664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.40  E-value=4.2e-10  Score=111.60  Aligned_cols=256  Identities=15%  Similarity=0.149  Sum_probs=166.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCce---
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV---  262 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v---  262 (485)
                      ++..++.++.|+.+..+|..+|+.+...... ..+.+.-.. .+..++.++.+|.|..||.++++.+..+......+   
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~  181 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR  181 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence            4677888889999999999999988766533 222211111 24567778889999999999999888775332211   


Q ss_pred             --EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc----c------E-EEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          263 --YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN----T------V-CSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       263 --~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~------v-~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                        .+....  +..++.+..+|.+..+|.++++.+........    .      + .+..+  .+..+++++.+|.+..||
T Consensus       182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEE
Confidence              111122  24678888899999999999988765431100    0      0 11112  255788888999999999


Q ss_pred             CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcE
Q 011457          330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSL  408 (485)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I  408 (485)
                      ..+++.+......  .......  .+..++.++.++ +..+|..+|+.+.+.............. .++.+++++.+|.|
T Consensus       258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l  332 (377)
T TIGR03300       258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYL  332 (377)
T ss_pred             CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEE
Confidence            9999887766521  1122222  345555555554 9999999998876642212222222222 23488899999999


Q ss_pred             EEEeCCCCcccccceeeeccCCCCCCccE-EEEEEccCCCEEEEEECCCcEEEec
Q 011457          409 WFWDWKSGHNFQQAQTIVQPGSLDSEAGI-YALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       409 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      +++|..+|+.+.....        +...+ ....+.  ++.|+.++.||.|+.|.
T Consensus       333 ~~~d~~tG~~~~~~~~--------~~~~~~~sp~~~--~~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       333 HWLSREDGSFVARLKT--------DGSGIASPPVVV--GDGLLVQTRDGDLYAFR  377 (377)
T ss_pred             EEEECCCCCEEEEEEc--------CCCccccCCEEE--CCEEEEEeCCceEEEeC
Confidence            9999999988776543        11112 222232  34688899999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.5e-10  Score=116.72  Aligned_cols=220  Identities=12%  Similarity=0.058  Sum_probs=142.3

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEE-EeCCCc--EE
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS-AGDDKQ--VK  242 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~--V~  242 (485)
                      +.+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +....+......|+|+|+.|+. .+.+|.  |.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            4455667788999999999998876543   368999998876533 2222333457899999997765 455664  77


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      +||+.+++.. .+..+.......+|+||++.|+..+. ++  .|.++|+.+++... +...........|+|++++|+..
T Consensus       290 ~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        290 VVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMV  367 (448)
T ss_pred             EEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEE
Confidence            8898877654 34445556678899999998776554 34  46677887776433 32222334457899999998776


Q ss_pred             eC-CC--CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEE
Q 011457          320 SH-DS--TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMA  392 (485)
Q Consensus       320 s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~  392 (485)
                      +. ++  .|.++|+.+++.. .+... .......|+|+|+.++..+..+    +++++. +|.....+ ....+.+...+
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l-~~~~g~~~~p~  443 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL-PAGQGEVKSPA  443 (448)
T ss_pred             EecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC-cCCCCCcCCCc
Confidence            55 34  4566788777643 23222 1223457999999887655432    666776 45554444 23344455566


Q ss_pred             eCC
Q 011457          393 VNE  395 (485)
Q Consensus       393 ~~~  395 (485)
                      |+|
T Consensus       444 Wsp  446 (448)
T PRK04792        444 WSP  446 (448)
T ss_pred             cCC
Confidence            665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.38  E-value=7.7e-10  Score=119.50  Aligned_cols=291  Identities=12%  Similarity=0.150  Sum_probs=200.2

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEE----ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIW----DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw----d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~  248 (485)
                      ...+.|.++.|-++...++.+..+|.|.+.    +..+... .....-...|.+++||||+..|+..+.+++|.+.+-. 
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-  150 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-  150 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-
Confidence            345789999999999999999999999999    5443332 2222245789999999999999999989988887521 


Q ss_pred             CeeE------------------------EEecc------------------------cCCceEEEEEecCCCEEEEEEC-
Q 011457          249 NKVI------------------------RSYHG------------------------HLSGVYCLGLHPTIDILLTGGR-  279 (485)
Q Consensus       249 ~~~~------------------------~~~~~------------------------h~~~v~~l~~~~~~~~l~sg~~-  279 (485)
                      .+.+                        .+|+|                        +...-..++|-.||.++++.+. 
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence            1111                        11111                        2234467889999999998875 


Q ss_pred             --C---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC---CCCEEEEECCCCeEEeEec----cCCCceE
Q 011457          280 --D---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH---DSTIKFWDLRYGKTMLTLT----HHKKSVR  347 (485)
Q Consensus       280 --d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~----~~~~~v~  347 (485)
                        .   ..++||+-+ |....+...-.+--.+++|.|.|+++++.-.   ...|.+|. ++|-.-..|.    .....|.
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence              3   478999965 6555444444455567899999999987764   34577777 3444433332    3456899


Q ss_pred             EEEECCCCCEEEEEcCCCEEEEECCCCcee--eeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCC----CCcc-
Q 011457          348 AMALHPTEDCFASASAENIKKFNLPKGEFL--HNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWK----SGHN-  418 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~----~~~~-  418 (485)
                      .+.|++++..|+....+.|.+|...+..-.  +.+.......+..+.|++..  .|...+.+|.+..+++.    .+.. 
T Consensus       309 ~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~  388 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS  388 (928)
T ss_pred             EEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence            999999999999999888999998776532  22222333445569999977  67777777777665542    1110 


Q ss_pred             ---------------c--cccee--eecc---CCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          419 ---------------F--QQAQT--IVQP---GSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       419 ---------------~--~~~~~--~~~~---~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                                     +  ..+..  .+.|   ..+.-...|.+++|++++..+++-..||.|.+|..+...
T Consensus       389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence                           0  00000  0111   122346789999999999989999999999999976544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=6.6e-12  Score=134.59  Aligned_cols=223  Identities=19%  Similarity=0.307  Sum_probs=175.9

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      ..++.|-..|.++.=+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus      2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            34556778899999999999999999999999999998888877652 34889999999999999999999999999986


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCC---ceEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTK---MQIFALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                       .+.....+.|......+.|-.  ..+++++.   ++.+.+||..-.   ..+.  ..|.+.++++++-|....|++|+.
T Consensus      2282 -pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             -CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCC
Confidence             777788889999999998876  55676654   788999997532   2333  789999999999999999999999


Q ss_pred             CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc--cc----EEEEEeC
Q 011457          322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK--TI----INSMAVN  394 (485)
Q Consensus       322 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~--~~----i~~~~~~  394 (485)
                      +|.|++||++..+....+..         ++ ...+|+.++..+ ++||++..-..+..+...|.  +.    -..+.+.
T Consensus      2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~ 2426 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG 2426 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec
Confidence            99999999998877766654         44 566788887766 99999988776666543331  10    1233344


Q ss_pred             CCCeEEEEeCCC
Q 011457          395 EEGVLATGGDNG  406 (485)
Q Consensus       395 ~~~~l~sg~~dg  406 (485)
                      ..+.|++++.||
T Consensus      2427 ~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2427 QCNRIFSCGADG 2438 (2439)
T ss_pred             cCceEEEecCCC
Confidence            445677776665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=3.5e-10  Score=113.23  Aligned_cols=221  Identities=11%  Similarity=0.030  Sum_probs=140.1

Q ss_pred             EecCCcceEEEEEccCCCE--E-EEEeCC--CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-----CCc
Q 011457          171 ISGHLGWVRSVAFDHSNTW--F-CTGSAD--RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-----DKQ  240 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~--l-~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-----dg~  240 (485)
                      |......+.+-+|+|||+.  + ++...+  ..|.+.++.+++... +....+.....+|+|||+.|+..+.     |..
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            3345556677899999975  2 233333  368888988776443 3324445567899999988886543     334


Q ss_pred             EEEEECCCC---eeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEE--ECCC-CceEEEeccCCccEEEEEEcCCC
Q 011457          241 VKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVW--DIRT-KMQIFALAGHDNTVCSVFTRPTD  313 (485)
Q Consensus       241 V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~l~~~~~~  313 (485)
                      +.+|++..+   +..+............+|+|||+.|+..+ .+|...+|  ++.. +.....+..+...+....|+|+|
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            455777653   33333333334456789999999777665 46655555  4432 23344555555677889999999


Q ss_pred             CEEEEEeCC---CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcc
Q 011457          314 PQVVTGSHD---STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKT  386 (485)
Q Consensus       314 ~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~  386 (485)
                      +.|+..+.+   ..|.+||+.+++... +......+....|+|||+.|+.....    .++++++..++.....  ...+
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g  415 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--IGSG  415 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCC
Confidence            988876543   369999998887643 33334456789999999987754332    2888898877643322  2233


Q ss_pred             cEEEEEeCC
Q 011457          387 IINSMAVNE  395 (485)
Q Consensus       387 ~i~~~~~~~  395 (485)
                      .+...+|+|
T Consensus       416 ~~~~p~Ws~  424 (428)
T PRK01029        416 EKRFPSWGA  424 (428)
T ss_pred             cccCceecC
Confidence            344555555

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=8.5e-10  Score=110.49  Aligned_cols=237  Identities=13%  Similarity=0.031  Sum_probs=146.9

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCE---EEEEeCC--CcEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY---MFSAGDD--KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~---l~s~~~d--g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~  271 (485)
                      ..|.+.|...+.. ..+......+..-.|+|||+.   +++...+  ..|.+.++.+++..+.. ...+......|+|||
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence            4677777654443 345545566677899999974   2344444  36888898877543332 234455678999999


Q ss_pred             CEEEEEEC-CC----cEEEEECCCC---ceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEE--ECCC-CeEEeEe
Q 011457          272 DILLTGGR-DS----VCRVWDIRTK---MQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFW--DLRY-GKTMLTL  339 (485)
Q Consensus       272 ~~l~sg~~-dg----~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iw--d~~~-~~~~~~~  339 (485)
                      +.|+..+. +|    .+.+|++..+   .................|+|||+.|+..+ .+|...+|  ++.. +.....+
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence            98876553 22    3444777653   32223322334456789999999887665 46655555  4432 2334445


Q ss_pred             ccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE-EeC--CCcEEEE
Q 011457          340 THHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT-GGD--NGSLWFW  411 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s-g~~--dg~I~iw  411 (485)
                      ......+....|+|||+.|+..+..    .|.+||+.+++.... . .....+....|+|+| .|+. +..  .+.|+++
T Consensus       323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-T-TSPENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-c-CCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            5555567789999999988876543    299999988875432 2 223356778999998 5543 333  3568888


Q ss_pred             eCCCCcccccceeeeccCCCCCCccEEEEEEccCC
Q 011457          412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG  446 (485)
Q Consensus       412 d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  446 (485)
                      |+.+++......         ..+.+...+|+|-.
T Consensus       401 dl~~g~~~~Lt~---------~~g~~~~p~Ws~~~  426 (428)
T PRK01029        401 SLITKKTRKIVI---------GSGEKRFPSWGAFP  426 (428)
T ss_pred             ECCCCCEEEeec---------CCCcccCceecCCC
Confidence            988765432211         22335566777643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=3.1e-11  Score=123.97  Aligned_cols=195  Identities=14%  Similarity=0.242  Sum_probs=158.6

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE----QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK  250 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~  250 (485)
                      .++|....+.-++..++.++.++.+.+||...+.....+.....    ...-+.++++.-++++|+.-+.|.+|+....+
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            35555566666788899999999999999987766655543221    22234456777899999999999999987444


Q ss_pred             eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                      .-..+.+|.+.|..+.|+.||.++++.+.|.++++|++.+.+... ...+|...|..+++.|+  .+++++.|.+.++|+
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~  244 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG  244 (967)
T ss_pred             CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence            333678999999999999999999999999999999999988776 66689999999999988  999999999999997


Q ss_pred             CCCCeEEeEeccCC-CceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457          330 LRYGKTMLTLTHHK-KSVRAMALHPTEDCFASASAEN-IKKFNLP  372 (485)
Q Consensus       330 ~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~  372 (485)
                      .. +..+..+..|. ..|..++..++....++++.|+ +++|++.
T Consensus       245 ~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  245 VN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             cc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            55 55555776664 5799999999999999988887 9998874

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.35  E-value=4.1e-10  Score=107.44  Aligned_cols=276  Identities=11%  Similarity=0.120  Sum_probs=194.1

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---------------
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---------------  238 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---------------  238 (485)
                      -.-++..++|||.|.+|++.... .|.+|+-..+..+..+. | ..|..+.|+|+++||.+=+..               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            45678899999999999988765 49999988877555555 3 678999999999999986543               


Q ss_pred             CcEEEEECCCCeeEEEecccCCc--eE-EEEEecCCCEEEEEECCCcEEEEECCCCce-EEEecc-CCccEEEEEEcCCC
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLSG--VY-CLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-IFALAG-HDNTVCSVFTRPTD  313 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~~~~~  313 (485)
                      +.+.+||+.++..+..+.+...+  .+ -+.|+-+.++++-. ....+.|+++ ++.. ...+.. ....|....|+|.+
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence            35999999999999999866655  44 67888887766654 3456999997 3321 111111 13567888888864


Q ss_pred             C--EEEE-----EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE------------cCCCEEEEECCCC
Q 011457          314 P--QVVT-----GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA------------SAENIKKFNLPKG  374 (485)
Q Consensus       314 ~--~l~s-----~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~------------~~~~i~i~d~~~~  374 (485)
                      +  .|+.     ...++.+++|.+..+..+.+-...+..-..+.|++.|.++++-            +..+++++++...
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~  265 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER  265 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence            3  3432     4667889999998777666544444444568899999877653            1234788888754


Q ss_pred             ceeeeeccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                      .+....  ...+.|...+|.|.+   -+++|-.+-.+.++|++.. ....+          .+..=+.+.|+|.+++++.
T Consensus       266 ~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~----------Pe~~rNT~~fsp~~r~il~  332 (561)
T COG5354         266 SIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF----------PEQKRNTIFFSPHERYILF  332 (561)
T ss_pred             ccceec--cccccceeeeecccCCceeEEecccccceeecccccc-eEEec----------CCcccccccccCcccEEEE
Confidence            443332  457889999998877   4556678889999998865 21111          2233445778888888888


Q ss_pred             EECC---CcEEEecCCCCC
Q 011457          452 CEAD---KTIKMWREDETA  467 (485)
Q Consensus       452 ~~~D---g~I~iW~~~~~~  467 (485)
                      ++-|   |.|-+|+..+..
T Consensus       333 agF~nl~gni~i~~~~~rf  351 (561)
T COG5354         333 AGFDNLQGNIEIFDPAGRF  351 (561)
T ss_pred             ecCCccccceEEeccCCce
Confidence            7765   678888876544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.33  E-value=2.5e-10  Score=101.73  Aligned_cols=236  Identities=17%  Similarity=0.243  Sum_probs=161.0

Q ss_pred             cceEEEEEcc---CCC-EEEEEeCCCeEEEEECCCCceEEEEcccc------cCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          176 GWVRSVAFDH---SNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHI------EQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       176 ~~V~~l~~sp---~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      ..+..+.|..   +|. .++-+-.+|.|.++..........+.+-.      ....++.|++.+..++++-.+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            3455555542   344 45566677889998876555444444321      1245788999999999999999999666


Q ss_pred             CCCCee--EEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECC-CCceEEE-eccCCccEEEEEEcC-CCCEEEEE
Q 011457          246 LEQNKV--IRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIR-TKMQIFA-LAGHDNTVCSVFTRP-TDPQVVTG  319 (485)
Q Consensus       246 ~~~~~~--~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~l~~~~-~~~~l~s~  319 (485)
                      ......  ++.++.|.-+.+...|+.. .+++++|+.|+.+..||++ .++.+.. .+-|...|.+|.-+| ...++++|
T Consensus       150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG  229 (339)
T KOG0280|consen  150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG  229 (339)
T ss_pred             cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence            555443  3478999999999999864 5689999999999999999 4445544 556899999998876 46789999


Q ss_pred             eCCCCEEEEECCC-CeEEeEeccCCCceEEEEECCCC--CEEEEEcCCCEEEEECCCCcee----eeeccCCcccEEEEE
Q 011457          320 SHDSTIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTE--DCFASASAENIKKFNLPKGEFL----HNMLSQQKTIINSMA  392 (485)
Q Consensus       320 s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~--~~l~~~~~~~i~i~d~~~~~~~----~~~~~~~~~~i~~~~  392 (485)
                      +.|-.|++||.|+ ++++..-. ..+.|..+.++|.-  .+++++-.++.++.+...+...    ......|.+-+..-.
T Consensus       230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D  308 (339)
T KOG0280|consen  230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD  308 (339)
T ss_pred             ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence            9999999999994 56655433 34789999999963  4666777777888877655332    122233333333333


Q ss_pred             eCCC-CeEEEEe-CCCcEE-EEe
Q 011457          393 VNEE-GVLATGG-DNGSLW-FWD  412 (485)
Q Consensus       393 ~~~~-~~l~sg~-~dg~I~-iwd  412 (485)
                      |... +.|++++ .|..|+ +|-
T Consensus       309 Wd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  309 WDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             cccccceeeeeeccccceeeeee
Confidence            4322 2566643 344433 553

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=7.6e-10  Score=106.53  Aligned_cols=276  Identities=11%  Similarity=0.121  Sum_probs=191.9

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-----------CCcEEEEEC
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-----------DKQVKCWDL  246 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-----------dg~V~iwd~  246 (485)
                      =+-+.|||.|.||+|--.-| |.+|--.+...++.|. | ..|.-+.|||+.+||++-+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35688999999999997766 8999877776666665 5 45889999999999998652           258999999


Q ss_pred             CCCeeEEEecccCC--ce-EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--
Q 011457          247 EQNKVIRSYHGHLS--GV-YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--  321 (485)
Q Consensus       247 ~~~~~~~~~~~h~~--~v-~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--  321 (485)
                      .+|...+.+....+  .+ .-+.|+.|+++++--..| .|.||+..+...+-.-.-.-..|....|+|.++.|+--+.  
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence            99999988865222  22 346899999999887774 6899998764443322234467888999999888774332  


Q ss_pred             ---CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-----------CEEEEECCCCceeeeeccCCccc
Q 011457          322 ---DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-----------NIKKFNLPKGEFLHNMLSQQKTI  387 (485)
Q Consensus       322 ---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-----------~i~i~d~~~~~~~~~~~~~~~~~  387 (485)
                         -..+.+-.+-+++.+++-..+.-.=..+.|-.+|.+|+.--+.           ++.|+.++........ ..-...
T Consensus       369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-velke~  447 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-VELKES  447 (698)
T ss_pred             cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-eecchh
Confidence               1346667777777766655555444557788888888864322           2555555554433332 234566


Q ss_pred             EEEEEeCCCC-eEEEEeC---CCcEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE---CCCcEE
Q 011457          388 INSMAVNEEG-VLATGGD---NGSLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE---ADKTIK  459 (485)
Q Consensus       388 i~~~~~~~~~-~l~sg~~---dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~---~Dg~I~  459 (485)
                      +...+|.|.| .+++-+.   ..++.+|.+++ ..........       .....+.+.|+|.|++++.+.   ..|.+.
T Consensus       448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-------dk~~~N~vfwsPkG~fvvva~l~s~~g~l~  520 (698)
T KOG2314|consen  448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-------DKKFANTVFWSPKGRFVVVAALVSRRGDLE  520 (698)
T ss_pred             eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-------cccccceEEEcCCCcEEEEEEecccccceE
Confidence            8889999999 4433222   36799998873 3333322221       124578899999999988764   578999


Q ss_pred             EecCCC
Q 011457          460 MWREDE  465 (485)
Q Consensus       460 iW~~~~  465 (485)
                      ++|.+-
T Consensus       521 F~D~~~  526 (698)
T KOG2314|consen  521 FYDTDY  526 (698)
T ss_pred             EEecch
Confidence            999885

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2.4e-10  Score=112.83  Aligned_cols=281  Identities=10%  Similarity=0.122  Sum_probs=191.5

Q ss_pred             eecccCCCCcccccccccCCCCCCCCCCCC-----------CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457          133 VSTSASSERNLSTSAIMERIPSKWPRPEWH-----------APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI  201 (485)
Q Consensus       133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~-----------~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i  201 (485)
                      ...+++.+..+++.++.|+.+++-......           .....-.+|.||.+.|.-+.|+.+.+.|-|...+|.|.|
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV   97 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV   97 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence            444555556666666666555433211111           112233578899999999999999999999999999999


Q ss_pred             EECCCCceEEEE--cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEecCCCEEEEEE
Q 011457          202 WDVAKGTLKLTL--TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTIDILLTGG  278 (485)
Q Consensus       202 wd~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~sg~  278 (485)
                      |-+-.+.-...+  ....+.|.+++|+.+|..+...-+||.|.+=.++.++.- +.+++  .....+.|++|...++.+-
T Consensus        98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~  175 (1189)
T KOG2041|consen   98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKK  175 (1189)
T ss_pred             EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhh
Confidence            998777543322  224578999999999999999999999999888755432 12222  2234788999999999999


Q ss_pred             CCCcEEEEECCCC-------ceEEE----eccCCccEEEEEEc--------CCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457          279 RDSVCRVWDIRTK-------MQIFA----LAGHDNTVCSVFTR--------PTDPQVVTGSHDSTIKFWDLRYGKTMLTL  339 (485)
Q Consensus       279 ~dg~i~iwd~~~~-------~~~~~----~~~~~~~v~~l~~~--------~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  339 (485)
                      .+|.+.+||....       .+...    +......|..+.|.        |+.+.|+++..+|.+.|..-.+......+
T Consensus       176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~  255 (1189)
T KOG2041|consen  176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV  255 (1189)
T ss_pred             cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence            9999999998632       11111    11122235556553        57789999999999988754443322222


Q ss_pred             ccCCCceEEEEECCCCCEEEEEcCCC---------EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457          340 THHKKSVRAMALHPTEDCFASASAEN---------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF  410 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~~~~l~~~~~~~---------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i  410 (485)
                      .. .-.+..+.|+++|..|+.++.+.         ...|-.+-|+.+..+ ...+..|+.++|...|+-++-.-|+.|++
T Consensus       256 dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtl-kvpg~~It~lsWEg~gLriA~Avdsfiyf  333 (1189)
T KOG2041|consen  256 DT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTL-KVPGSCITGLSWEGTGLRIAIAVDSFIYF  333 (1189)
T ss_pred             ec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEE-ecCCceeeeeEEcCCceEEEEEecceEEE
Confidence            22 25688899999999999987652         444445566666664 45667899999998884444445677777


Q ss_pred             EeCCCCc
Q 011457          411 WDWKSGH  417 (485)
Q Consensus       411 wd~~~~~  417 (485)
                      =+++...
T Consensus       334 anIRP~y  340 (1189)
T KOG2041|consen  334 ANIRPEY  340 (1189)
T ss_pred             Eeecccc
Confidence            6665443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.31  E-value=1e-09  Score=106.76  Aligned_cols=187  Identities=13%  Similarity=0.222  Sum_probs=153.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEecc---cCCceEEEEEe------c--------------CCCEEEEEECCCcE
Q 011457          227 SKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG---HLSGVYCLGLH------P--------------TIDILLTGGRDSVC  283 (485)
Q Consensus       227 ~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~---h~~~v~~l~~~------~--------------~~~~l~sg~~dg~i  283 (485)
                      |...|+|....||.+++||...++....|..   -.+...+..|.      |              +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999999988777742   22333344432      2              23478889999999


Q ss_pred             EEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457          284 RVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA  361 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~  361 (485)
                      .+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+...++.+..+......+.+++++||+..++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999998887776  699999999999888899999999999999999999999999989999999999999988876


Q ss_pred             cCCCEEEEECCCCceeeeeccCCcccEEEEEeCCC-----C--eEEEEeCCCcEEEEeCCC
Q 011457          362 SAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE-----G--VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       362 ~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~--~l~sg~~dg~I~iwd~~~  415 (485)
                      + ..|.+||+++++.+..| .+|.+.|+++.|..+     |  +|.+...+..|.+|-+..
T Consensus       163 s-~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  163 S-RQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             c-ceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            5 45999999999999886 789999999998766     4  444455566788887655

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.29  E-value=9e-11  Score=106.59  Aligned_cols=314  Identities=15%  Similarity=0.219  Sum_probs=204.7

Q ss_pred             CcceeecccCCCCcccccccccCCCCCCCCCCCC-CCcceEEEEecCC------------cceEEEEEccCCC--EEEEE
Q 011457          129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH-APWKCYRVISGHL------------GWVRSVAFDHSNT--WFCTG  193 (485)
Q Consensus       129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~-~~~~~~~~l~~H~------------~~V~~l~~sp~~~--~l~tg  193 (485)
                      .+.|.+..|...|.+++|+-+.+-+..+...... ..++.+..++.|.            ..|+.|.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3455667788999999998877777766544332 3566677777776            4589999988654  57777


Q ss_pred             eCCCeEEEEECCCCceEE-----------------------------------EE-cccccCEEEEEEcCCCCEEEEEeC
Q 011457          194 SADRTIKIWDVAKGTLKL-----------------------------------TL-TGHIEQVRGLAVSSKHTYMFSAGD  237 (485)
Q Consensus       194 s~dg~I~iwd~~~~~~~~-----------------------------------~~-~~h~~~V~~l~~s~~~~~l~s~~~  237 (485)
                      +.|.+|++|.+.......                                   .+ ..|.-.|.++.++.|+..++++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            799999999875321111                                   00 3577889999999999988887 6


Q ss_pred             CCcEEEEECCCCee---EEEeccc-----CCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEE------E------
Q 011457          238 DKQVKCWDLEQNKV---IRSYHGH-----LSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIF------A------  296 (485)
Q Consensus       238 dg~V~iwd~~~~~~---~~~~~~h-----~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~------~------  296 (485)
                      |=.|.+|+++--..   +-.++.+     ..-|++..|||. .+.++-.+..|+|++-|++.....-      .      
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            78899999874322   2222333     345888999996 5688888999999999998532211      0      


Q ss_pred             ----eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeEEeEeccCCC------------c---eEEEEECCCCC
Q 011457          297 ----LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKTMLTLTHHKK------------S---VRAMALHPTED  356 (485)
Q Consensus       297 ----~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~------------~---v~~l~~~p~~~  356 (485)
                          +...-..|..+.|+++|+++++-+. -+|++||+. ..+++.++..|..            .   -..++|+.++.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence                1122346788999999999987543 589999994 4666666655432            1   24578999999


Q ss_pred             EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457          357 CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEA  435 (485)
Q Consensus       357 ~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  435 (485)
                      ++++|+-.+ +++|+...|................-....-..+.+++......+|-                ..++...
T Consensus       343 ~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~v----------------d~ldf~k  406 (433)
T KOG1354|consen  343 YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISV----------------DALDFRK  406 (433)
T ss_pred             eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccccccc----------------chhhhhh
Confidence            999999888 89999766654322222111111000111111344444443322210                0112334


Q ss_pred             cEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          436 GIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       436 ~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      .|...+|+|..+.++.+..+ .++||
T Consensus       407 kilh~aWhp~en~ia~aatn-nlyif  431 (433)
T KOG1354|consen  407 KILHTAWHPKENSIAVAATN-NLYIF  431 (433)
T ss_pred             HHHhhccCCccceeeeeecC-ceEEe
Confidence            46778999999999888664 46655

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.28  E-value=1.8e-09  Score=96.33  Aligned_cols=267  Identities=15%  Similarity=0.153  Sum_probs=180.3

Q ss_pred             CCeEEEEECCCCceEE--E-EcccccCEEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCeeEEEecccC------Cce
Q 011457          196 DRTIKIWDVAKGTLKL--T-LTGHIEQVRGLAVSS---KHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHL------SGV  262 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~--~-~~~h~~~V~~l~~s~---~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~------~~v  262 (485)
                      .|.+.+|++.+.+...  + .....+.+..+.|.-   ++. .++-+..+|.|.++..........+.+-.      ...
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4678888887665433  1 112345566777763   344 56667788999999876554444443221      124


Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEECCCCce--EEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECC-CCeEEeE
Q 011457          263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ--IFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLR-YGKTMLT  338 (485)
Q Consensus       263 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~-~~~~~~~  338 (485)
                      .++.|++.+..++++..+|.+.+-+......  ++.++.|+-......|+... +.+.+|+.|+.+..||+| .++.+..
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            5788999999999999999999666554433  34778899999999887654 578899999999999999 3444443


Q ss_pred             -eccCCCceEEEEECC-CCCEEEEEcCCC-EEEEECCC-CceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEe
Q 011457          339 -LTHHKKSVRAMALHP-TEDCFASASAEN-IKKFNLPK-GEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWD  412 (485)
Q Consensus       339 -~~~~~~~v~~l~~~p-~~~~l~~~~~~~-i~i~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd  412 (485)
                       .+.|...|.+|.-+| .+.++++|+.|. |++||.++ ++++..  ..-.+.|..+..+|.-  .++.++.-.-.+|-+
T Consensus       205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~--~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK--AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc--CccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence             456778899988876 477999998876 99999984 555543  3344778999988875  445555555567777


Q ss_pred             CCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-CCCcEE-EecCCCCC
Q 011457          413 WKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-ADKTIK-MWREDETA  467 (485)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I~-iW~~~~~~  467 (485)
                      ...+..-  ++ ...+....|..-++.-.|+.....|+|++ .|+.|+ +|-.-++.
T Consensus       283 ~~~~~~e--~~-~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  283 SSDKVLE--FQ-IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             ecccccc--hh-eeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            6654332  11 11222335666677777766666788865 677755 88654443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.27  E-value=7.7e-09  Score=97.99  Aligned_cols=283  Identities=14%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCC-eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADR-TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK  242 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~  242 (485)
                      +|.....--+|.+.|+-..+.-+++-++.|..|| .+-|+|..+++.. .+...-+.|.++..+++|++++++.....+.
T Consensus       348 ~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~  426 (668)
T COG4946         348 PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELW  426 (668)
T ss_pred             CCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence            3444455558999999999998888999999999 9999998877654 4555778999999999999999998889999


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC----cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS----VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      +.|++++.....-+...+-|+.++|||++++++-+--+|    .|+++|+..++..... .....=.+-+|.|++++|.-
T Consensus       427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEE
Confidence            999999987665566778899999999999999887765    6899999987755433 34445566788999998875


Q ss_pred             EeCCCCEEEEECCCCeEEeEe--ccCCCceEEEE----ECCC-----------CCEEEEEcCCCEEEEECCCCceeeeec
Q 011457          319 GSHDSTIKFWDLRYGKTMLTL--THHKKSVRAMA----LHPT-----------EDCFASASAENIKKFNLPKGEFLHNML  381 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~----~~p~-----------~~~l~~~~~~~i~i~d~~~~~~~~~~~  381 (485)
                      -+...    .|....+.+..+  ..+..+...+.    .+|-           +.+.+-+-.+.+.-+.+..+.. ..+.
T Consensus       506 Ls~Rs----LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY-~sI~  580 (668)
T COG4946         506 LSARS----LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDY-RSIA  580 (668)
T ss_pred             Eeccc----cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccce-eEee
Confidence            54311    121111111111  11111110000    0111           1111111111111111111111 1111


Q ss_pred             cCCcccEEEEEeCCCC----eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCc
Q 011457          382 SQQKTIINSMAVNEEG----VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKT  457 (485)
Q Consensus       382 ~~~~~~i~~~~~~~~~----~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~  457 (485)
                      ...++.|.-..+.-.|    ++-.+-..|.+.+||+++.+...            -...+.++..|+||+.+.. -.||.
T Consensus       581 ~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e------------~k~nvss~rlS~D~s~ilv-k~d~k  647 (668)
T COG4946         581 GLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE------------YKDNVSSFRLSSDGSKILV-KLDGK  647 (668)
T ss_pred             ecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH------------HhcccceEEEcCCCCEEEE-EeCCe
Confidence            1122222222222222    22223445777788877654322            2345889999999999988 78999


Q ss_pred             EEEecCCCC
Q 011457          458 IKMWREDET  466 (485)
Q Consensus       458 I~iW~~~~~  466 (485)
                      +++++++..
T Consensus       648 l~~f~vekk  656 (668)
T COG4946         648 LRLFDVEKK  656 (668)
T ss_pred             EEEEecccC
Confidence            999999763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.24  E-value=6.1e-08  Score=92.80  Aligned_cols=234  Identities=13%  Similarity=0.092  Sum_probs=153.6

Q ss_pred             EccCCCEEEEEeC----------CCeEEEEECCCCceEEEEcccc-------cCEEEEEEcCCCCEEEEEe-C-CCcEEE
Q 011457          183 FDHSNTWFCTGSA----------DRTIKIWDVAKGTLKLTLTGHI-------EQVRGLAVSSKHTYMFSAG-D-DKQVKC  243 (485)
Q Consensus       183 ~sp~~~~l~tgs~----------dg~I~iwd~~~~~~~~~~~~h~-------~~V~~l~~s~~~~~l~s~~-~-dg~V~i  243 (485)
                      ++||++.|+++..          +..|.+||..+++.+..+....       ..-..++++|+|++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998877765          6899999999999998886422       2234789999999999876 3 689999


Q ss_pred             EECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE--E---eccCCccE-EEEEEcC-CCCEE
Q 011457          244 WDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF--A---LAGHDNTV-CSVFTRP-TDPQV  316 (485)
Q Consensus       244 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~---~~~~~~~v-~~l~~~~-~~~~l  316 (485)
                      .|+.+++.+..+.- .+...-...+.+..  .+-+.||......+.+.....  .   +......+ ..-.+.+ ++.++
T Consensus       133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~~--~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       133 VDLEGKAFVRMMDV-PDCYHIFPTANDTF--FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EECCCCcEEEEEeC-CCCcEEEEecCCcc--EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            99999999998863 22222222222222  233455555554443211111  1   11100000 0003344 78788


Q ss_pred             EEEeCCCCEEEEECCCC-----eEEeEecc-------CCCceEEEEECCCCCEEEEEc-----------CCCEEEEECCC
Q 011457          317 VTGSHDSTIKFWDLRYG-----KTMLTLTH-------HKKSVRAMALHPTEDCFASAS-----------AENIKKFNLPK  373 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~-----~~~~~~~~-------~~~~v~~l~~~p~~~~l~~~~-----------~~~i~i~d~~~  373 (485)
                      ++... |+|.+.|+...     +....+..       ....+.-+++++++..+....           .+.+.++|..+
T Consensus       210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t  288 (352)
T TIGR02658       210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT  288 (352)
T ss_pred             EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence            77776 99999996432     22322221       122344599999988777642           12499999999


Q ss_pred             CceeeeeccCCcccEEEEEeCCCC--eEEEEe-CCCcEEEEeCCCCcccccc
Q 011457          374 GEFLHNMLSQQKTIINSMAVNEEG--VLATGG-DNGSLWFWDWKSGHNFQQA  422 (485)
Q Consensus       374 ~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~-~dg~I~iwd~~~~~~~~~~  422 (485)
                      ++.+..+..+  ..+..+++++++  .|++.. .++.|.++|..+++.+..+
T Consensus       289 ~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       289 GKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9999887543  468899999998  444333 5788999999999877765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=6.7e-11  Score=127.13  Aligned_cols=223  Identities=17%  Similarity=0.209  Sum_probs=172.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc-CCccEEEEE
Q 011457          230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG-HDNTVCSVF  308 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~  308 (485)
                      +.+.....++...-|..+.+...  ++.+-..|.++.-||...+.++|+.||.|++|....++.+..+.. -...|+.+.
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred             ccCCcccCCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence            44444445666666665433322  233567789999999999999999999999999999888877752 237899999


Q ss_pred             EcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC--C--CEEEEECCCCceeeeeccCC
Q 011457          309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA--E--NIKKFNLPKGEFLHNMLSQQ  384 (485)
Q Consensus       309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~  384 (485)
                      |+.+|+.+..+..||.+.+|... .++......|......+.|-.  ..+++++.  +  ++.+||........-+...|
T Consensus      2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred             hcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeec
Confidence            99999999999999999999987 677777888888888888875  45555432  2  39999975443333334678


Q ss_pred             cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          385 KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       385 ~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      ....+++++-|.. .|++|+.+|.|++||++..+....++.                 ++ ...+|++|+..|.|+||++
T Consensus      2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------------hh-hhheeeccCcccceEEEEc
Confidence            8899999999998 999999999999999998766655542                 44 5679999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 011457          464 DETATPETHPLN  475 (485)
Q Consensus       464 ~~~~~~~~~~~~  475 (485)
                      .......+.|..
T Consensus      2398 s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2398 SEFGLLHTFPSE 2409 (2439)
T ss_pred             cccchhhcCchh
Confidence            988766655543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.23  E-value=5.9e-09  Score=96.30  Aligned_cols=217  Identities=15%  Similarity=0.153  Sum_probs=143.7

Q ss_pred             CCeEEEEECCCCceEEEEccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457          196 DRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI  273 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  273 (485)
                      +|+|..||..+|+.+....--  .....+. ..+++.++++++.++.|..||..+|+.+..+.. ...+.... ...++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence            689999999999998887531  1222221 233566788888999999999999999888764 22221111 223456


Q ss_pred             EEEEECCCcEEEEECCCCceEEEe-ccCC---ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc----
Q 011457          274 LLTGGRDSVCRVWDIRTKMQIFAL-AGHD---NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS----  345 (485)
Q Consensus       274 l~sg~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----  345 (485)
                      +++++.++.|..+|..+++.+... ....   ...........+..++++..++.|..+|+++|+.+.........    
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            777788999999999999999884 3221   11122222223778999999999999999999998877654322    


Q ss_pred             ------eEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcc
Q 011457          346 ------VRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       346 ------v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~  418 (485)
                            +..-....++ .+..++.++ +..+|+.+++.+....  .. .+..+....++.|++++.+|.|..||+++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~-~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--IS-GIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS--ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CC-CccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence                  1222223345 555555444 5555999999665332  22 23332344455777777999999999999876


Q ss_pred             c
Q 011457          419 F  419 (485)
Q Consensus       419 ~  419 (485)
                      .
T Consensus       235 ~  235 (238)
T PF13360_consen  235 V  235 (238)
T ss_dssp             E
T ss_pred             E
Confidence            4

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.23  E-value=2.4e-08  Score=110.04  Aligned_cols=237  Identities=17%  Similarity=0.284  Sum_probs=159.3

Q ss_pred             EEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEcc--c------------ccCEEEEEEcCCCCEEEEEe-CCCcEE
Q 011457          179 RSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTG--H------------IEQVRGLAVSSKHTYMFSAG-DDKQVK  242 (485)
Q Consensus       179 ~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h------------~~~V~~l~~s~~~~~l~s~~-~dg~V~  242 (485)
                      ..+++++. +.++++-+.++.|++||.. +..+..+.+  .            -.....+++.++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 5677777778899999975 444444332  1            12357899999888766654 457899


Q ss_pred             EEECCCCeeEEEeccc-----------------CCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEeccC----
Q 011457          243 CWDLEQNKVIRSYHGH-----------------LSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFALAGH----  300 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~----  300 (485)
                      ++|+.++. +.++.+.                 -.....++++| ++.++++.+.++.|++||..++... .+.+.    
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            99987765 3333110                 12346899999 5666677778899999999876532 22111    


Q ss_pred             -----------CccEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEecc-------------C--------CCceE
Q 011457          301 -----------DNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTH-------------H--------KKSVR  347 (485)
Q Consensus       301 -----------~~~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~-------------~--------~~~v~  347 (485)
                                 -.....++++|++..| ++-+.++.|++||+.++.......+             .        -....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                       1234578999998855 5556678999999987653211100             0        11246


Q ss_pred             EEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          348 AMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      .++++++|.++++...++ |++||..++......-.+            .-.....++++++| ++++-+.++.|++||+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            889999998877777665 999999877654322111            11246788999999 7777788899999999


Q ss_pred             CCCcc
Q 011457          414 KSGHN  418 (485)
Q Consensus       414 ~~~~~  418 (485)
                      .++..
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            88764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=7.8e-08  Score=88.86  Aligned_cols=267  Identities=12%  Similarity=0.182  Sum_probs=176.5

Q ss_pred             CCeEEEEECCCCceE---EEEcccccCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeeE--EEecccCCceEEE
Q 011457          196 DRTIKIWDVAKGTLK---LTLTGHIEQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQ--NKVI--RSYHGHLSGVYCL  265 (485)
Q Consensus       196 dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~--~~~~--~~~~~h~~~v~~l  265 (485)
                      +.-|++|++.+..-.   ..+-...+.++-|+|+|++++|.++..   +|.|..|.++.  |++.  ........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            457999998743211   122346678899999999999998854   47888887765  4432  2222223344889


Q ss_pred             EEecCCCEEEEEEC-CCcEEEEECCC-CceEE--EeccCCcc----------EEEEEEcCCCCEEEEEeC-CCCEEEEEC
Q 011457          266 GLHPTIDILLTGGR-DSVCRVWDIRT-KMQIF--ALAGHDNT----------VCSVFTRPTDPQVVTGSH-DSTIKFWDL  330 (485)
Q Consensus       266 ~~~~~~~~l~sg~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~l~~~~~~~~l~s~s~-dg~I~iwd~  330 (485)
                      ++++++++++++.. -|.|.++-++. |....  .+..|.+.          +....+.|++++|++.+- --.|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999998877 57899999865 32211  12224444          788899999999988754 236999999


Q ss_pred             CCCeEEeEe---ccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCC--ce--eeeecc-----CCcccEEEEEeCCC
Q 011457          331 RYGKTMLTL---THHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKG--EF--LHNMLS-----QQKTIINSMAVNEE  396 (485)
Q Consensus       331 ~~~~~~~~~---~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~--~~--~~~~~~-----~~~~~i~~~~~~~~  396 (485)
                      ..|+....-   -.....-+.|.|+|++++....++=+  |.+|.....  ++  ++.+..     ........+.++++
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            977653321   13455789999999999877766543  888887763  22  222111     22355778999999


Q ss_pred             CeEEEEeCC--CcEEEEeCCCCc-ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-CcEEEecCCCCC
Q 011457          397 GVLATGGDN--GSLWFWDWKSGH-NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-KTIKMWREDETA  467 (485)
Q Consensus       397 ~~l~sg~~d--g~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-g~I~iW~~~~~~  467 (485)
                      |.++-.++.  ..|.+|.+.... .+.......     .+...-....|+++|++|+++..| ..|.+|..+...
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~-----teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITP-----TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec-----cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            944444443  368888775432 222222211     123335778999999999998865 569999887654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=5.9e-11  Score=113.83  Aligned_cols=241  Identities=20%  Similarity=0.301  Sum_probs=170.8

Q ss_pred             EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       210 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      +..+.||...|+.++--.+.+-+++++.|++|++|.++.       ..+..++..|..+|.++.|-.+.+++++  .||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            456889999999998877888899999999999999853       3477788999999999999998777665  5889


Q ss_pred             EEEEECCCCceEEEec--cCCccEEEEEEcC--CCCEEEEE-eCCCCEEEEECCCCeEEeEec-----cCCCceEEEEEC
Q 011457          283 CRVWDIRTKMQIFALA--GHDNTVCSVFTRP--TDPQVVTG-SHDSTIKFWDLRYGKTMLTLT-----HHKKSVRAMALH  352 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~--~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~~  352 (485)
                      |.+||.--++.+..+.  ...+.+..+..-+  +...++.| +...+|+++|.+..+-...++     +....+++++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999987776654332  1222333333333  34455555 778999999999887655543     344568999999


Q ss_pred             CCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE-EeCCCCcccccceeeeccCC
Q 011457          353 PTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF-WDWKSGHNFQQAQTIVQPGS  430 (485)
Q Consensus       353 p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i-wd~~~~~~~~~~~~~~~~~~  430 (485)
                      +.|++++++-.++ |.+.|.++|+.+..+. ........++-..+..|+....|.++.+ |..-+|....+.+....+.+
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepah  964 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH  964 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence            9999999887666 9999999999887653 2333333444444557888888889988 98777765555444333322


Q ss_pred             CCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          431 LDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       431 ~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      +          ...-|..|+++.....+.+|.-
T Consensus       965 f----------lqsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  965 F----------LQSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             h----------hhccCceeEEeccCcEEEEEec
Confidence            1          1123556777766666777754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.20  E-value=2.7e-08  Score=109.72  Aligned_cols=244  Identities=15%  Similarity=0.146  Sum_probs=158.8

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEecc--------------cCCceEEEEEecCCCEEEEEEC-CCcEE
Q 011457          221 RGLAVSSK-HTYMFSAGDDKQVKCWDLEQNKVIRSYHG--------------HLSGVYCLGLHPTIDILLTGGR-DSVCR  284 (485)
Q Consensus       221 ~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--------------h~~~v~~l~~~~~~~~l~sg~~-dg~i~  284 (485)
                      ..+++++. +.++++-..++.|++||.. +..+..+.+              .-.....+++.++++.|+++.. ++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788764 5566666778899999986 444444322              1123578999998886666554 57899


Q ss_pred             EEECCCCceEEEeccC-----------------CccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCCeEEeEeccC----
Q 011457          285 VWDIRTKMQIFALAGH-----------------DNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH----  342 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~-----------------~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~----  342 (485)
                      ++|+.++. +.++.+.                 -..-..++++| ++..+++.+.++.|++||..++.... +.+.    
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence            99987754 3333210                 11235789999 55566777788999999998765432 1110    


Q ss_pred             -----------CCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeec------------cCC--------cccEE
Q 011457          343 -----------KKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNML------------SQQ--------KTIIN  389 (485)
Q Consensus       343 -----------~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~------------~~~--------~~~i~  389 (485)
                                 ......|+++|++..++++..+ + |++||+.++.......            ...        -....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                       1235679999999855544433 3 9999998765321100            000        01235


Q ss_pred             EEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccC------CCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          390 SMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG------SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       390 ~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~------~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      .++++++| ++++-..++.|++||..++........ -..+      ....-.....++++++|+.+++-+.++.|++|+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~-G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT-GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc-CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            78899988 777778899999999987754422211 0000      001123467899999999999989999999999


Q ss_pred             CCCCCC
Q 011457          463 EDETAT  468 (485)
Q Consensus       463 ~~~~~~  468 (485)
                      +.+...
T Consensus       887 ~~~~~~  892 (1057)
T PLN02919        887 LNKGEA  892 (1057)
T ss_pred             CCCCcc
Confidence            987654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.19  E-value=2.1e-08  Score=100.01  Aligned_cols=260  Identities=13%  Similarity=0.131  Sum_probs=163.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEE-
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG-LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYC-  264 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~-l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~-  264 (485)
                      +..++.++.+|.+..+|.++|+.+....... .+.+ ...  .+..++.+..++.|..+|.++|+.+..+......+.. 
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            5567778889999999999999888766432 2221 112  2345777888999999999999998887532111100 


Q ss_pred             EEEec--CCCEEEEEECCCcEEEEECCCCceEEEeccCCc-------cEEEEEEcC--CCCEEEEEeCCCCEEEEECCCC
Q 011457          265 LGLHP--TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-------TVCSVFTRP--TDPQVVTGSHDSTIKFWDLRYG  333 (485)
Q Consensus       265 l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~~~--~~~~l~s~s~dg~I~iwd~~~~  333 (485)
                      ..-+|  .+..++.++.+|.+..+|..+++.+........       ....+..+|  .+..+++++.+|.+..+|..+|
T Consensus       197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG  276 (394)
T PRK11138        197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG  276 (394)
T ss_pred             CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence            00011  134677788899999999999987766531110       011111122  2557778888999999999999


Q ss_pred             eEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          334 KTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       334 ~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                      +.+......  ....+.. .++..++...++.+..+|..+|+.+............+..+ .++.|+.++.+|.|+++|.
T Consensus       277 ~~~W~~~~~--~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        277 QIVWKREYG--SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             CEEEeecCC--CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEEC
Confidence            887665321  1112222 13344444444559999999998776542211112222222 2568889999999999999


Q ss_pred             CCCcccccceeeeccCCCCCCccEE-EEEEccCCCEEEEEECCCcEEEecC
Q 011457          414 KSGHNFQQAQTIVQPGSLDSEAGIY-ALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .+|+.+......        ...+. ...+  .+..|+.++.||.|+.++.
T Consensus       353 ~tG~~~~~~~~~--------~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        353 EDGRFVAQQKVD--------SSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCCEEEEEEcC--------CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            999876655421        11122 1222  2458888999999998875

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.18  E-value=2.4e-10  Score=113.23  Aligned_cols=291  Identities=20%  Similarity=0.251  Sum_probs=195.1

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC-ceEEEEcccc--cCEEEEEEcCCC--CEEEEEeCCCcEEEEECCC
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG-TLKLTLTGHI--EQVRGLAVSSKH--TYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~--~~V~~l~~s~~~--~~l~s~~~dg~V~iwd~~~  248 (485)
                      -.+++.++.++|.|+-+|.++.-| +.+-|+... ....-+. |.  -.|-.+.|++..  .+-++......-.+|++..
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            367889999999999999998877 556666543 3333222 32  346778888643  4444444556677898843


Q ss_pred             ---CeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCc-eEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 011457          249 ---NKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKM-QIFALAGHDNTVCSVFTRPTDPQVVTGSHDS  323 (485)
Q Consensus       249 ---~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg  323 (485)
                         +..-..+++|...|+.+.|+|. ...+++++.|-.+..||+++.. .+.....-...-..+.|+...+.+++.+...
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~  180 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN  180 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence               3455667899999999999996 4589999999999999999754 4555555566778899998888888888889


Q ss_pred             CEEEEECCCC-eEEeEeccCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--e
Q 011457          324 TIKFWDLRYG-KTMLTLTHHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--V  398 (485)
Q Consensus       324 ~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~  398 (485)
                      .|++||++.| .++..+++|...|..+.|..- ...+.+++.++ ++.||..+...........+..+..-.+.|-|  +
T Consensus       181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~  260 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY  260 (1081)
T ss_pred             ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence            9999999976 457788888888998888653 23455555555 99999877655444444455556555555544  2


Q ss_pred             -EEEEeCCCcEEEEeCCCCcccccceeeec--cCCCCCCccEEEEEEccCC----------CEEEEEECCCcEEEecCCC
Q 011457          399 -LATGGDNGSLWFWDWKSGHNFQQAQTIVQ--PGSLDSEAGIYALSYDVTG----------SRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       399 -l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~~~~~~~~~V~~l~~s~~g----------~~L~s~~~Dg~I~iW~~~~  465 (485)
                       +.-.-.+..+.+++.++...........+  ....+|...|....|-..+          -.|+|-+.|.++++|.+++
T Consensus       261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence             22111122555555444332221111111  1123566666555553322          2699999999999999876


Q ss_pred             C
Q 011457          466 T  466 (485)
Q Consensus       466 ~  466 (485)
                      .
T Consensus       341 ~  341 (1081)
T KOG0309|consen  341 Q  341 (1081)
T ss_pred             H
Confidence            3

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=2.2e-07  Score=85.95  Aligned_cols=241  Identities=12%  Similarity=0.168  Sum_probs=164.8

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCC--CceEE--EEcccccCEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAK--GTLKL--TLTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCW  244 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~--~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~V~iw  244 (485)
                      .+.+.++-|+|+|+++.|.++..+   |.|-.|.+..  |++..  .......+-..+++++++++|+++.. .|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            567888999999999999888655   6777777654  54432  12222233478999999999999874 5899999


Q ss_pred             ECCC-Cee---EEEecccCCc----------eEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEec---cCCccEEE
Q 011457          245 DLEQ-NKV---IRSYHGHLSG----------VYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALA---GHDNTVCS  306 (485)
Q Consensus       245 d~~~-~~~---~~~~~~h~~~----------v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~---~~~~~v~~  306 (485)
                      -+.. |.+   +..+ .|.+.          +.+..+.|++++|++.+. --.|.+|++..+.....-.   .....-..
T Consensus       117 p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         117 PLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             EcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence            8855 332   2222 24444          788999999999888764 2369999999775432211   24557789


Q ss_pred             EEEcCCCCEEEEEe-CCCCEEEEECCCC--e--EEeEecc------CCCceEEEEECCCCCEEEEEcCCC--EEEEECCC
Q 011457          307 VFTRPTDPQVVTGS-HDSTIKFWDLRYG--K--TMLTLTH------HKKSVRAMALHPTEDCFASASAEN--IKKFNLPK  373 (485)
Q Consensus       307 l~~~~~~~~l~s~s-~dg~I~iwd~~~~--~--~~~~~~~------~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~  373 (485)
                      |.|+|++++..+.+ -+++|-+|.....  +  .++.+..      ......+|.++++|++|.++..+.  |.+|.+..
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            99999999876554 5889999988763  2  2222211      234678899999999999997764  88887654


Q ss_pred             C--ce-eeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeCC
Q 011457          374 G--EF-LHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDWK  414 (485)
Q Consensus       374 ~--~~-~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~  414 (485)
                      .  +. .......+........+++++ +|+++. ++..|.+|...
T Consensus       276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            3  22 122233344457788899998 555554 44678888764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=3.4e-09  Score=105.80  Aligned_cols=309  Identities=12%  Similarity=0.129  Sum_probs=199.2

Q ss_pred             CCcceEEEEecCCcceEEEEEccCC------------CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC--
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSN------------TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK--  228 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~------------~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~--  228 (485)
                      ...+.+.++.-|...|+.+.|.|-.            -+||++...|.|.+||...+..+..+..|..++..++|-+.  
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence            3467788888999999999998732            25777778899999999999999999999999999999763  


Q ss_pred             -C-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCC-------CceEEEec
Q 011457          229 -H-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRT-------KMQIFALA  298 (485)
Q Consensus       229 -~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~-------~~~~~~~~  298 (485)
                       . ..|+.-....+|.+|+..+|+....+........|+.+.| |.+.+..-+..|.+.+-+.-.       ++..+.-.
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s  202 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS  202 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence             2 4566666778999999999999998876667788899988 455666667777777776531       22222222


Q ss_pred             cCCc----------------c---------EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC
Q 011457          299 GHDN----------------T---------VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP  353 (485)
Q Consensus       299 ~~~~----------------~---------v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p  353 (485)
                      .|.+                .         ...++|+|.-+.++-......+.++|++-..++.......+.+.-+.+-|
T Consensus       203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP  282 (1062)
T KOG1912|consen  203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP  282 (1062)
T ss_pred             CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence            2221                0         12245677655555556678899999998888888777777677777777


Q ss_pred             CC--CEEEEEcCCC-EEEEECCCC----------------ceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEe
Q 011457          354 TE--DCFASASAEN-IKKFNLPKG----------------EFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWD  412 (485)
Q Consensus       354 ~~--~~l~~~~~~~-i~i~d~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd  412 (485)
                      ++  ..+.+...++ +.+|-.+..                +....+..-.+..+......|..  .++.--.+|.+.+|.
T Consensus       283 ~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~  362 (1062)
T KOG1912|consen  283 DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQ  362 (1062)
T ss_pred             CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHh
Confidence            65  4666666665 777754431                11111111111112222233332  444445678889999


Q ss_pred             CCCCccccccee----eec-------------------cCCCCCCccEEEEEEc-----------cCC-------CEEEE
Q 011457          413 WKSGHNFQQAQT----IVQ-------------------PGSLDSEAGIYALSYD-----------VTG-------SRLVT  451 (485)
Q Consensus       413 ~~~~~~~~~~~~----~~~-------------------~~~~~~~~~V~~l~~s-----------~~g-------~~L~s  451 (485)
                      +++|+.......    ...                   ....+|..+.++....           |.|       .+++.
T Consensus       363 l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAv  442 (1062)
T KOG1912|consen  363 LSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAV  442 (1062)
T ss_pred             hhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEe
Confidence            886654221110    000                   0001233333333322           222       35788


Q ss_pred             EECCCcEEEecCCCCCCCCC
Q 011457          452 CEADKTIKMWREDETATPET  471 (485)
Q Consensus       452 ~~~Dg~I~iW~~~~~~~~~~  471 (485)
                      |...|+|.++|+.++.....
T Consensus       443 GT~sGTV~vvdvst~~v~~~  462 (1062)
T KOG1912|consen  443 GTNSGTVDVVDVSTNAVAAS  462 (1062)
T ss_pred             ecCCceEEEEEecchhhhhh
Confidence            99999999999998875443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.16  E-value=1.2e-07  Score=102.63  Aligned_cols=333  Identities=10%  Similarity=0.106  Sum_probs=198.6

Q ss_pred             CcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 011457          129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT  208 (485)
Q Consensus       129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~  208 (485)
                      .+.|++..+-++...+.-+...+.+....... ...-..+.....-...|.|++||||+..|+..+.++++.+.+-. .+
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~-~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd  152 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDP-DPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FD  152 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccC-CCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ce
Confidence            35566666555554433333333333221110 11122233333446899999999999999999999998886521 11


Q ss_pred             eE------------------------EEEcc------------------------cccCEEEEEEcCCCCEEEEEeC---
Q 011457          209 LK------------------------LTLTG------------------------HIEQVRGLAVSSKHTYMFSAGD---  237 (485)
Q Consensus       209 ~~------------------------~~~~~------------------------h~~~V~~l~~s~~~~~l~s~~~---  237 (485)
                      .+                        ..|+|                        +...-..|+|-.||.|+|+.+.   
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence            11                        11111                        2224457889999999998764   


Q ss_pred             C---CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCCceE--EEe--ccCCccEEEE
Q 011457          238 D---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTKMQI--FAL--AGHDNTVCSV  307 (485)
Q Consensus       238 d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~--~~~--~~~~~~v~~l  307 (485)
                      +   ..++||+-+ |.+...-..-.+--.+++|.|.|++|++...   ...|.+|.-+ |-.-  ..+  ......|..+
T Consensus       233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l  310 (928)
T PF04762_consen  233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIEL  310 (928)
T ss_pred             CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEE
Confidence            2   589999965 6655554444444568899999999998876   3456777643 3222  222  2345689999


Q ss_pred             EEcCCCCEEEEEeCCCCEEEEECCCCeE--EeEecc-CCCceEEEEECCCCC-EEEEEcC-CCEEEEEC----CCC----
Q 011457          308 FTRPTDPQVVTGSHDSTIKFWDLRYGKT--MLTLTH-HKKSVRAMALHPTED-CFASASA-ENIKKFNL----PKG----  374 (485)
Q Consensus       308 ~~~~~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~-~~~~v~~l~~~p~~~-~l~~~~~-~~i~i~d~----~~~----  374 (485)
                      .|++++..|++...|. |.+|-..+..-  .+.+.. ....+..+.|+|... .|...+. +.+..++.    ..+    
T Consensus       311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~  389 (928)
T PF04762_consen  311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS  389 (928)
T ss_pred             EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence            9999999999977665 99998877542  222221 223355589998643 3444444 44433322    111    


Q ss_pred             ------------ceeee--------------eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccc----c-
Q 011457          375 ------------EFLHN--------------MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQ----A-  422 (485)
Q Consensus       375 ------------~~~~~--------------~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~----~-  422 (485)
                                  ..+.-              ..-.-...|+.++|++++ .+++-..||.|.+|.+........    + 
T Consensus       390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~  469 (928)
T PF04762_consen  390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL  469 (928)
T ss_pred             ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh
Confidence                        00000              001123568999999988 799999999999999655432210    0 


Q ss_pred             eeee-----ccCCCCCCccEEEEEEccCCCEEEEEECC---CcEEEecCCCC
Q 011457          423 QTIV-----QPGSLDSEAGIYALSYDVTGSRLVTCEAD---KTIKMWREDET  466 (485)
Q Consensus       423 ~~~~-----~~~~~~~~~~V~~l~~s~~g~~L~s~~~D---g~I~iW~~~~~  466 (485)
                      ....     ..........+..++|..+...++....+   ..+.++++...
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  521 (928)
T PF04762_consen  470 SSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS  521 (928)
T ss_pred             hhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence            0000     00111134557889998887777666654   67888887443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.15  E-value=1.2e-08  Score=90.04  Aligned_cols=229  Identities=13%  Similarity=0.001  Sum_probs=152.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceE-EEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceE
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLK-LTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVY  263 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~  263 (485)
                      ...+||.|+.-|...+|.+.+.+.. .....|...|+-+.=.. ...-+..++.|.++++.+++.+..-...+...-.+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            4568999999999999999866543 33344544443221111 223467788899999998876544433332223488


Q ss_pred             EEEEecCCCEEEEEECCCcEEEEECCCCce-E-E-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe---
Q 011457          264 CLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-I-F-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML---  337 (485)
Q Consensus       264 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~-~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~---  337 (485)
                      +++++++++++++.+....|..|.+..... + . .....++.--+..|+.....+++++.||++.|||++......   
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            999999999999999999999999875322 2 2 223344555678899999999999999999999999754332   


Q ss_pred             --EeccCCCceEEEEECCCCC---EEEEEcCCCEEEEECCCCceeeeeccCCc-------ccEEEEEeCCCC-eEEEEeC
Q 011457          338 --TLTHHKKSVRAMALHPTED---CFASASAENIKKFNLPKGEFLHNMLSQQK-------TIINSMAVNEEG-VLATGGD  404 (485)
Q Consensus       338 --~~~~~~~~v~~l~~~p~~~---~l~~~~~~~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~-~l~sg~~  404 (485)
                        +-..|.+.++.+.|++.|.   +|++-.-..+.+.|++++...+.+....+       ..|..-.|+.++ .+.+...
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence              2345888999999998664   34444444599999999877665533322       225555666665 3333333


Q ss_pred             CCcEEEEeCCC
Q 011457          405 NGSLWFWDWKS  415 (485)
Q Consensus       405 dg~I~iwd~~~  415 (485)
                      + .+.=|++.+
T Consensus       323 ~-~~ae~ni~s  332 (344)
T KOG4532|consen  323 L-QGAEYNILS  332 (344)
T ss_pred             h-hhheeeccc
Confidence            2 344455443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=6.3e-09  Score=103.99  Aligned_cols=288  Identities=15%  Similarity=0.085  Sum_probs=196.3

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC------------CCEEEEEeCCCcEEE
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK------------HTYMFSAGDDKQVKC  243 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~------------~~~l~s~~~dg~V~i  243 (485)
                      ..-.++.|+|.| ++|-|+. ..|.+-|..+.+.+.++..|...|+.+.|.|-            .-.|+++...|.|.+
T Consensus        16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            336678899876 5666654 67999999999999999999999999999862            135778888899999


Q ss_pred             EECCCCeeEEEecccCCceEEEEEecC---C-CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEE
Q 011457          244 WDLEQNKVIRSYHGHLSGVYCLGLHPT---I-DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVT  318 (485)
Q Consensus       244 wd~~~~~~~~~~~~h~~~v~~l~~~~~---~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s  318 (485)
                      ||...+..+..+..|..++..++|-+.   . ++|+.-..-..+.+|+..+|+..+..........|+.+.| +.+.+..
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence            999999988889889999999999773   3 4777778888999999999999998887777788899988 4455666


Q ss_pred             EeCCCCEEEEECCC-------CeEEeEeccCCC------------c-------------eEEEEECCCC-CEEEEEcCCC
Q 011457          319 GSHDSTIKFWDLRY-------GKTMLTLTHHKK------------S-------------VRAMALHPTE-DCFASASAEN  365 (485)
Q Consensus       319 ~s~dg~I~iwd~~~-------~~~~~~~~~~~~------------~-------------v~~l~~~p~~-~~l~~~~~~~  365 (485)
                      -+..|.+.+-+.-.       ++..+.-..|..            .             ...++|+|.- +.+...-..+
T Consensus       174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE  253 (1062)
T ss_pred             EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence            66677776665421       222222222111            0             1234567754 3555666677


Q ss_pred             EEEEECCCCceeeeeccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE-----
Q 011457          366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI-----  437 (485)
Q Consensus       366 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V-----  437 (485)
                      +.++|++-...+..+ .-..+.+.-+.+-|+.   .|+++..||.+.+|-.+.........  .+.-..+-...+     
T Consensus       254 llv~dle~~~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~--~~~l~~dl~~Q~~~vr~  330 (1062)
T KOG1912|consen  254 LLVFDLEYECCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP--NASLSMDLGEQVHVVRP  330 (1062)
T ss_pred             eEEEcchhhceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc--chhhccccccceEEEee
Confidence            999999888777665 2334444555565655   89999999999999765422211110  000001111112     


Q ss_pred             ------EEEEEccC-CCEEEEEECCCcEEEecCCCCCC
Q 011457          438 ------YALSYDVT-GSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       438 ------~~l~~s~~-g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                            ......|. ...++.--.+|.+.+|.+.++..
T Consensus       331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri  368 (1062)
T KOG1912|consen  331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI  368 (1062)
T ss_pred             chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence                  22222333 33444555688999999986553

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.11  E-value=5.7e-08  Score=96.88  Aligned_cols=266  Identities=11%  Similarity=0.113  Sum_probs=168.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEccccc----------CEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE----------QVR-GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----------~V~-~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      .+..+++++.+|.+.-+|..+|+.+........          .+. .+..  .+..++.++.+|.+..+|.++|+.+.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            356777888889999999999998877643220          000 0111  345677888899999999999999888


Q ss_pred             ecccCCceEE-EEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-----EEEEEcCCCCEEEEEeCCCCEEEE
Q 011457          255 YHGHLSGVYC-LGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-----CSVFTRPTDPQVVTGSHDSTIKFW  328 (485)
Q Consensus       255 ~~~h~~~v~~-l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~s~dg~I~iw  328 (485)
                      ..... .+.+ ..+  .+..++.++.++.+..+|..+++.+..........     .+...  .+..++.++.+|.+..+
T Consensus       146 ~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~  220 (394)
T PRK11138        146 TKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAV  220 (394)
T ss_pred             ccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence            76432 2221 112  24567778889999999999999998876321111     11111  13467778889999999


Q ss_pred             ECCCCeEEeEeccCCC-------ceEEEEECC---CCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCe
Q 011457          329 DLRYGKTMLTLTHHKK-------SVRAMALHP---TEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGV  398 (485)
Q Consensus       329 d~~~~~~~~~~~~~~~-------~v~~l~~~p---~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  398 (485)
                      |..+|+.+........       ....+..+|   ++..++.+.++.+..+|..+|+.+.+.....   ...+.. .++.
T Consensus       221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~~-~~~~  296 (394)
T PRK11138        221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFAV-DGGR  296 (394)
T ss_pred             EccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcEE-ECCE
Confidence            9999987665432110       011111222   4444444445559999999998876643221   112222 2447


Q ss_pred             EEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457          399 LATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET  471 (485)
Q Consensus       399 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~  471 (485)
                      ++.++.+|.+..+|..+|+.........      . ....+...  .+.+|+.++.||.|.+.|..+++....
T Consensus       297 vy~~~~~g~l~ald~~tG~~~W~~~~~~------~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~  360 (394)
T PRK11138        297 IYLVDQNDRVYALDTRGGVELWSQSDLL------H-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ  360 (394)
T ss_pred             EEEEcCCCeEEEEECCCCcEEEcccccC------C-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            8888899999999999997654332110      0 11111222  256788899999999999888775443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=4.3e-08  Score=95.01  Aligned_cols=228  Identities=11%  Similarity=0.186  Sum_probs=156.3

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCee
Q 011457          179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH--TYMFS-----AGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~--~~l~s-----~~~dg~V~iwd~~~~~~  251 (485)
                      ++..|+.|..+.|-- ..+.+.+|++.+.+.... .-|...|+.+.++|.+  ..+++     .|.-+.|+||...-...
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            478888877644332 346799999877443322 2367889999999874  33443     34556899998762221


Q ss_pred             EEEe---cccCCceEEEEEecCCC-EEE--EEECC---------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE
Q 011457          252 IRSY---HGHLSGVYCLGLHPTID-ILL--TGGRD---------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       252 ~~~~---~~h~~~v~~l~~~~~~~-~l~--sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  316 (485)
                      -..+   .-....=..+.|++-|. +|+  +..-|         .+++++++....+...+. ..++|.++.|++++..+
T Consensus       207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF  285 (566)
T KOG2315|consen  207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREF  285 (566)
T ss_pred             cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEE
Confidence            1111   11122234577887766 222  22223         468888888445555554 58999999999999766


Q ss_pred             E--EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEE
Q 011457          317 V--TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINS  390 (485)
Q Consensus       317 ~--s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~  390 (485)
                      +  .|..-..+.|||++ ++++..+  ..++-+++-|+|.|++++.++-++    +-+||..+.+.+..+.   -...+-
T Consensus       286 ~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~  359 (566)
T KOG2315|consen  286 AVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTV  359 (566)
T ss_pred             EEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceE
Confidence            5  46677899999987 5666555  466778899999999999888775    9999999977776652   234567


Q ss_pred             EEeCCCC-eEEEEeC------CCcEEEEeCCC
Q 011457          391 MAVNEEG-VLATGGD------NGSLWFWDWKS  415 (485)
Q Consensus       391 ~~~~~~~-~l~sg~~------dg~I~iwd~~~  415 (485)
                      +.|+||| ++++++.      |+.++||++..
T Consensus       360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            8899999 7777764      68899999754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.08  E-value=4.1e-08  Score=86.74  Aligned_cols=261  Identities=8%  Similarity=-0.040  Sum_probs=173.4

Q ss_pred             CeEEEEECCCCc--eEEEEcccccCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEe
Q 011457          197 RTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSS-----KHTYMFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLH  268 (485)
Q Consensus       197 g~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~  268 (485)
                      ..|.+|++-+..  .+...       +.+.|.|     ...+|+.||.-|...+|...+++.. +....|...|.-+.=.
T Consensus        52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~  124 (344)
T KOG4532|consen   52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY  124 (344)
T ss_pred             eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence            456777765443  22222       2344444     4467999999999999999876543 3334444433222111


Q ss_pred             cC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eE-Ee-EeccCCC
Q 011457          269 PT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KT-ML-TLTHHKK  344 (485)
Q Consensus       269 ~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~-~~-~~~~~~~  344 (485)
                      -+ .--+..++.|.++++.++.-+.....+....-.+.++.++++++++++.+....|..|.+... +. +. .......
T Consensus       125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D  204 (344)
T KOG4532|consen  125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD  204 (344)
T ss_pred             cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence            11 224667788888988888755443333222234889999999999999999999999988653 22 22 2223334


Q ss_pred             ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee----eccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCCC
Q 011457          345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN----MLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~----~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~~  416 (485)
                      .-.+..|+.....||++..++ +.+||++.......    ....|++.+..+.|++.|   +|+..-.-+.+.+.|++++
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            556788999999999999998 99999987654332    245688999999999877   6666666789999999998


Q ss_pred             cccccceeeeccCCCCCC-ccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          417 HNFQQAQTIVQPGSLDSE-AGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      ...+.+...... ...|. ..|+..+|+.++..+.+..++. +.-|++...
T Consensus       285 ~~~q~I~i~~d~-~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr  333 (344)
T KOG4532|consen  285 VNHQVIVIPDDV-ERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR  333 (344)
T ss_pred             ceeeEEecCccc-cccccccccccccccCCCcccccccchh-hheeecccc
Confidence            776655433222 12233 3388889998888777776543 555666543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.08  E-value=1.4e-09  Score=101.06  Aligned_cols=160  Identities=19%  Similarity=0.280  Sum_probs=113.3

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCc----eEEEEcccccCEEEEEEcCCCCEEE---EEeCCCcEEEEECCCCe
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGT----LKLTLTGHIEQVRGLAVSSKHTYMF---SAGDDKQVKCWDLEQNK  250 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~---s~~~dg~V~iwd~~~~~  250 (485)
                      +..+.+++++++||.+..+....++++....    +...... ...-+++.|..+.....   ..+....+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            3445567788888888777776666654333    2222221 12223344444444333   34556677777776644


Q ss_pred             eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                      + ..+-||-+.++.++|+||+++|+++.+|..|+|-....--.+..+- ||+.-|..++..++. .|++++.|++|++||
T Consensus       144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD  221 (390)
T ss_pred             c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence            3 3445799999999999999999999999999998877655555543 799999999988655 589999999999999


Q ss_pred             CCCCeEEeEec
Q 011457          330 LRYGKTMLTLT  340 (485)
Q Consensus       330 ~~~~~~~~~~~  340 (485)
                      +++|+.+.++.
T Consensus       222 ~~sgk~L~t~d  232 (390)
T KOG3914|consen  222 ITSGKLLDTCD  232 (390)
T ss_pred             cccCCcccccc
Confidence            99999886654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.06  E-value=7.2e-09  Score=93.19  Aligned_cols=239  Identities=15%  Similarity=0.280  Sum_probs=161.1

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----eEEEEcccc------------cCEEEEEEcCCC--CEEEE
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-----LKLTLTGHI------------EQVRGLAVSSKH--TYMFS  234 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~------------~~V~~l~~s~~~--~~l~s  234 (485)
                      ..+.|+++.|...|.||++|...|.|.+|.-+...     ....+++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999999999999754332     122344443            457788887654  34666


Q ss_pred             EeCCCcEEEEECCCCee-------------------------------------E-----EEe-cccCCceEEEEEecCC
Q 011457          235 AGDDKQVKCWDLEQNKV-------------------------------------I-----RSY-HGHLSGVYCLGLHPTI  271 (485)
Q Consensus       235 ~~~dg~V~iwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~l~~~~~~  271 (485)
                      .+.|.+|++|.+.....                                     +     +.+ ..|.--|.++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            67899999998753210                                     0     111 2466678899999988


Q ss_pred             CEEEEEECCCcEEEEECCCCce---EEEeccCC-----ccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEE------
Q 011457          272 DILLTGGRDSVCRVWDIRTKMQ---IFALAGHD-----NTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTM------  336 (485)
Q Consensus       272 ~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~-----~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~------  336 (485)
                      ..++++ .|=.|.+|++.-...   +..++.|.     ..|++..|+|. .+.+...+..|.|++-|++.....      
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            777765 567899999875433   23333343     46788899985 456667788999999999853211      


Q ss_pred             eE----------eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCce-eeeeccC-----------CcccE---EEE
Q 011457          337 LT----------LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEF-LHNMLSQ-----------QKTII---NSM  391 (485)
Q Consensus       337 ~~----------~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~-~~~~~~~-----------~~~~i---~~~  391 (485)
                      ..          +..-...|..+.|+++|+++++-+.-.+.+||.+..+. +.++..+           ....|   -.+
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei  343 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI  343 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence            11          12223478899999999999999888899999987543 3332111           01111   235


Q ss_pred             EeCCCC-eEEEEeCCCcEEEEeC
Q 011457          392 AVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       392 ~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      .|+.+. .+++|+..+..-+|-.
T Consensus       344 sfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         344 SFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EecCCcccccccccccceeeecc
Confidence            566665 7888887777777754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.04  E-value=1.4e-06  Score=81.01  Aligned_cols=216  Identities=14%  Similarity=0.107  Sum_probs=141.3

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe-cCCCEEEEEECCCcEEEEECCCCceEEEecc
Q 011457          222 GLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH-PTIDILLTGGRDSVCRVWDIRTKMQIFALAG  299 (485)
Q Consensus       222 ~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  299 (485)
                      +..|.+ ++.++++--..+.|..|+..+++... +... . ...+++. ++ ..|+.+..++ +.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 66777776678999999998876543 2212 2 6778888 55 5566666555 55569988855443332


Q ss_pred             -----CCccEEEEEEcCCCCEEEEEeCC--------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-C
Q 011457          300 -----HDNTVCSVFTRPTDPQVVTGSHD--------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-N  365 (485)
Q Consensus       300 -----~~~~v~~l~~~~~~~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~  365 (485)
                           .....+.+++.++|++.++....        |.|..++.. ++...... .-...+.|+|+|+++.|+.+... +
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence                 34578899999999977776544        557777777 55433332 34557899999999977655443 3


Q ss_pred             -EEEEECCCCce----eeeec--cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE
Q 011457          366 -IKKFNLPKGEF----LHNML--SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI  437 (485)
Q Consensus       366 -i~i~d~~~~~~----~~~~~--~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V  437 (485)
                       |..+++.....    ...+.  .........+++..+| +.++....+.|.++|.. |+.+..+..        ....+
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------p~~~~  227 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--------PVPRP  227 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---------SSSSE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--------CCCCE
Confidence             88888853221    11221  2222358889999999 55666678999999977 776665543        12368


Q ss_pred             EEEEE-ccCCCEEEEEE
Q 011457          438 YALSY-DVTGSRLVTCE  453 (485)
Q Consensus       438 ~~l~~-s~~g~~L~s~~  453 (485)
                      ++++| -++.+.|+..+
T Consensus       228 t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  228 TNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEESTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            99999 46666665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.03  E-value=1.3e-06  Score=77.23  Aligned_cols=110  Identities=12%  Similarity=0.025  Sum_probs=83.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceE-EE
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVY-CL  265 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~-~l  265 (485)
                      ..+++.|+..+.+.--|..+|++...-. -...|.+-+.- -|++++.|+..|.+++.+..+|..+..+... +.|. .-
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccce
Confidence            4678888888999999999998776533 12333333332 4677999999999999999999888887633 3332 34


Q ss_pred             EEecCCCEEEEEECCCcEEEEECCCCceEEEecc
Q 011457          266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG  299 (485)
Q Consensus       266 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  299 (485)
                      ...+++..+..|+.|++.+..|.++..+++..+.
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            4567889999999999999999999888877653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=3.3e-07  Score=91.36  Aligned_cols=191  Identities=7%  Similarity=-0.041  Sum_probs=125.8

Q ss_pred             cceEEEEEccCCCE-EEEEeC---CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eC--CCcEEEEECCC
Q 011457          176 GWVRSVAFDHSNTW-FCTGSA---DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GD--DKQVKCWDLEQ  248 (485)
Q Consensus       176 ~~V~~l~~sp~~~~-l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~--dg~V~iwd~~~  248 (485)
                      +.+..-.|+|||+. ++..+.   +..|.++|+.+++...... ..+......|+|||+.|+.. +.  +..|.++|+.+
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            37788999999985 554443   3579999998887655433 45556678899999876643 33  35788889887


Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC---
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD---  322 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d---  322 (485)
                      ++.. .+..+........|+|||+.|+..+. .+  .|.++|+.+++...... ....  ...|+|+|+.++..+..   
T Consensus       267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCc
Confidence            7643 34334333345689999987776654 33  68888888776533332 1111  24899999988766553   


Q ss_pred             ------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCC
Q 011457          323 ------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPK  373 (485)
Q Consensus       323 ------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~  373 (485)
                            ..|.+.|+.++.. ..+... .......|+|||+.++.....+    +.++++..
T Consensus       343 ~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             ccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                  2688889887754 334332 2334588999999877665432    55666643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.02  E-value=2.4e-06  Score=79.31  Aligned_cols=209  Identities=12%  Similarity=0.124  Sum_probs=139.2

Q ss_pred             EEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457          180 SVAFDH-SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS-SKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       180 ~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      ++.|.+ ++.++++-...+.|..|+..+++... +....  ...+++. +++. |+.+..++ +.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 77777777778999999998876543 22222  6777888 5654 55555544 56669998865444432


Q ss_pred             -----cCCceEEEEEecCCCEEEEEECC--------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE-EEeCCC
Q 011457          258 -----HLSGVYCLGLHPTIDILLTGGRD--------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDS  323 (485)
Q Consensus       258 -----h~~~v~~l~~~~~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg  323 (485)
                           .....+.+++.++|++.++....        |.|..++.. ++... +...-.....|+|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeecccccc
Confidence                 34568899999999977776554        557777776 44333 333355678999999998776 556678


Q ss_pred             CEEEEECCCCeE-------EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeC-
Q 011457          324 TIKFWDLRYGKT-------MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVN-  394 (485)
Q Consensus       324 ~I~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~-  394 (485)
                      .|..|++.....       ...+....+..-.+++..+|+++++....+ |.+++.. |+.+..+... ...+++++|. 
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg  234 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGG  234 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEES
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEEC
Confidence            899999863211       112222223478899999999877765544 9999977 8888777555 3478888884 


Q ss_pred             CCC
Q 011457          395 EEG  397 (485)
Q Consensus       395 ~~~  397 (485)
                      ++.
T Consensus       235 ~~~  237 (246)
T PF08450_consen  235 PDG  237 (246)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=1.2e-06  Score=78.85  Aligned_cols=237  Identities=16%  Similarity=0.155  Sum_probs=144.3

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          181 VAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       181 l~~sp~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      ++.+.+|+.||.. .|..|.|=..++.  ..+....   ...-.=+.++|+||+.+||.+...|+|+++|+.. ..+..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            5677889887776 5677877665443  1222222   2233457899999999999999999999999975 334344


Q ss_pred             cc-------cCCceEEEEEecCC------CEEEEEECCCcEEEEECCC-----CceEEEec---cCCccEEEEEEcCCCC
Q 011457          256 HG-------HLSGVYCLGLHPTI------DILLTGGRDSVCRVWDIRT-----KMQIFALA---GHDNTVCSVFTRPTDP  314 (485)
Q Consensus       256 ~~-------h~~~v~~l~~~~~~------~~l~sg~~dg~i~iwd~~~-----~~~~~~~~---~~~~~v~~l~~~~~~~  314 (485)
                      ..       -...|..|.|.+..      ..|++-..+|.++-|-+..     .+..+.+.   .+...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            32       22456777776532      2577778888888777532     22333333   2467999999999998


Q ss_pred             EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEE--EEEcCCC-------EEEEECCCCceeeeeccCCc
Q 011457          315 QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF--ASASAEN-------IKKFNLPKGEFLHNMLSQQK  385 (485)
Q Consensus       315 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l--~~~~~~~-------i~i~d~~~~~~~~~~~~~~~  385 (485)
                      +|++|+....      ..+.    -+.....+++-.+-.+..+.  +...++.       ..+|.+.+..... ......
T Consensus       161 LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~  229 (282)
T PF15492_consen  161 LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQ  229 (282)
T ss_pred             EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-ccccCC
Confidence            8888775432      0000    00111112222221111111  1111121       1233333322221 124456


Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCC
Q 011457          386 TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS  430 (485)
Q Consensus       386 ~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  430 (485)
                      ..|..|..+||| .|++...+|.|.+|++.+-..........+|+.
T Consensus       230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqPg~  275 (282)
T PF15492_consen  230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQPGY  275 (282)
T ss_pred             CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCCCC
Confidence            789999999999 999999999999999998887777766555543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.00  E-value=1.1e-06  Score=79.06  Aligned_cols=228  Identities=12%  Similarity=0.196  Sum_probs=137.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457          223 LAVSSKHTYMFSAGDDKQVKCWDLEQN--KVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       223 l~~s~~~~~l~s~~~dg~V~iwd~~~~--~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  297 (485)
                      ++.+.+|+.||+. .|..|.|-..++.  ..+.+..   .....=.-++|+||+.+|+.+...|+|++||+.. ..+..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            5667888877776 5677777765543  2233332   2223457899999999999999999999999975 344444


Q ss_pred             cc-------CCccEEEEEEcCCC------CEEEEEeCCCCEEEEECCC-----CeEEeEec---cCCCceEEEEECCCCC
Q 011457          298 AG-------HDNTVCSVFTRPTD------PQVVTGSHDSTIKFWDLRY-----GKTMLTLT---HHKKSVRAMALHPTED  356 (485)
Q Consensus       298 ~~-------~~~~v~~l~~~~~~------~~l~s~s~dg~I~iwd~~~-----~~~~~~~~---~~~~~v~~l~~~p~~~  356 (485)
                      ..       -...|..+.|.+..      ..|++-..+|.++-|-+..     .+....+.   .....|.++.++|.-+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            32       23466777665421      2467777888888887532     22333332   2456899999999988


Q ss_pred             EEEEEcCCC------------EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          357 CFASASAEN------------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       357 ~l~~~~~~~------------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      +|++++...            +..|.+-++.+....          +.-.+++.-......   .+|.+-+...+..   
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~----------v~~~~~~~~~~~~~~---~~~~~~~~~~fs~---  224 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ----------VTSSEDDITASSKRR---GLLRIPSFKFFSR---  224 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEE----------ccccCcccccccccc---ceeeccceeeeec---
Confidence            887775432            333333222221111          011111111111111   2333322211111   


Q ss_pred             eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          425 IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       425 ~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                           .......|..|..||||+.||+...+|.|.+|++..-.....-+
T Consensus       225 -----~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  225 -----QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             -----cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence                 01245679999999999999999999999999998766544333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=4.8e-10  Score=113.18  Aligned_cols=219  Identities=15%  Similarity=0.277  Sum_probs=163.4

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC--CcE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--KQV  241 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~V  241 (485)
                      .|+..++++.|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.......+|.+.|+.+.-+.+|..+++.+.-  --.
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            466777888999999999999999999999999999999999999999999999999999999999877765533  257


Q ss_pred             EEEECCC-CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec----cCCccEEEEEEcCCCCEE
Q 011457          242 KCWDLEQ-NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA----GHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       242 ~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~~l  316 (485)
                      .+|++.+ +...++|.    .-.++.|+.....-+.|+....+.+||+.++..+.++.    +....-.+..|+|++.++
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            8999854 33444443    34578888765555666666779999999987766532    122233678899998877


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE  396 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  396 (485)
                      +   .||  .+||.+..+.+..|..... --.=.|+|.|..++.-+    .+||+++.+.++....-.   -..+.|+..
T Consensus      1246 l---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~Ld---qc~VtFNst 1312 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSLD---QCAVTFNST 1312 (1516)
T ss_pred             e---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec----hhhhhHHHHHHhcCcccc---ceEEEeccC
Confidence            6   455  5899998877776654331 12236899999888765    589999888776643222   345678877


Q ss_pred             CeE
Q 011457          397 GVL  399 (485)
Q Consensus       397 ~~l  399 (485)
                      |-+
T Consensus      1313 G~V 1315 (1516)
T KOG1832|consen 1313 GDV 1315 (1516)
T ss_pred             ccc
Confidence            733

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=8.2e-09  Score=96.10  Aligned_cols=159  Identities=13%  Similarity=0.211  Sum_probs=118.1

Q ss_pred             eEEEEEecCCCEEEEEECCCcEEEEECCCCce----EEEeccCCccEEEEEEcCCCCEEEEEeCCC---CEEEEECCCCe
Q 011457          262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ----IFALAGHDNTVCSVFTRPTDPQVVTGSHDS---TIKFWDLRYGK  334 (485)
Q Consensus       262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg---~I~iwd~~~~~  334 (485)
                      +..+..++.+.+|+++..+....+++++....    +... .-...-+.+.+..+...+.++..-|   .+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            44556677888999988888877877765432    1111 1222334444444555555544444   44555544433


Q ss_pred             EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          335 TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       335 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                       ...+.+|-.-+..++++||+++++++..|. |++-..+.-..+..+..+|...|..+++-++..|++|+.|++|++||+
T Consensus       144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence             344557888999999999999999999887 999999988888888899999999999999999999999999999999


Q ss_pred             CCCcccccc
Q 011457          414 KSGHNFQQA  422 (485)
Q Consensus       414 ~~~~~~~~~  422 (485)
                      .+|+.+..+
T Consensus       223 ~sgk~L~t~  231 (390)
T KOG3914|consen  223 TSGKLLDTC  231 (390)
T ss_pred             ccCCccccc
Confidence            999887554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=9.1e-07  Score=88.23  Aligned_cols=210  Identities=7%  Similarity=-0.024  Sum_probs=132.3

Q ss_pred             CcEEEEECCCCeeEEEecccCCceEEEEEecCCCE-EEEEECC---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCC
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI-LLTGGRD---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP  314 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  314 (485)
                      ..|.+-|.+... .+.+... +......|+|||+. ++..+.+   ..|.++|+.+++...... ..+......|+|||+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            356665654333 3334323 37788999999984 5544443   569999998886554433 455666788999998


Q ss_pred             EEEEE-eCC--CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeeeeccCCccc
Q 011457          315 QVVTG-SHD--STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHNMLSQQKTI  387 (485)
Q Consensus       315 ~l~s~-s~d--g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~  387 (485)
                      .++.. +.+  ..|.++|+..++. ..+...........|+|||+.|+..++.    .|+++++..++..+....+. . 
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~-  322 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N-  322 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c-
Confidence            77643 333  4688889877764 3444433334456899999988777654    38999998877644332221 1 


Q ss_pred             EEEEEeCCCC-eEEEEeCC---------CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-C
Q 011457          388 INSMAVNEEG-VLATGGDN---------GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-K  456 (485)
Q Consensus       388 i~~~~~~~~~-~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-g  456 (485)
                        ...|+|+| .|+.....         ..|++.|+.++.... +..         ........|+|||++|+....+ +
T Consensus       323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~---------~~~~~~p~~SPDG~~I~f~~~~~~  390 (419)
T PRK04043        323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA---------NGVNQFPRFSSDGGSIMFIKYLGN  390 (419)
T ss_pred             --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC---------CCCcCCeEECCCCCEEEEEEccCC
Confidence              24899999 55444432         368888988875322 211         1112247899999988766543 2


Q ss_pred             --cEEEecCCCC
Q 011457          457 --TIKMWREDET  466 (485)
Q Consensus       457 --~I~iW~~~~~  466 (485)
                        .|.+.+++..
T Consensus       391 ~~~L~~~~l~g~  402 (419)
T PRK04043        391 QSALGIIRLNYN  402 (419)
T ss_pred             cEEEEEEecCCC
Confidence              3666666554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.2e-08  Score=96.12  Aligned_cols=239  Identities=13%  Similarity=0.111  Sum_probs=173.2

Q ss_pred             CCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeC-CCeEEEEECCCCceEEEEcc--c
Q 011457          140 ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSA-DRTIKIWDVAKGTLKLTLTG--H  216 (485)
Q Consensus       140 ~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~--h  216 (485)
                      ......+++.|+.+..|.+.. ..--..+..+..|.+.|.+++.+-++-+++|++. |..++++|+++-..+.-++.  -
T Consensus        19 ka~fiiqASlDGh~KFWkKs~-isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l   97 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSR-ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL   97 (558)
T ss_pred             hhheEEeeecchhhhhcCCCC-ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence            345677888999999997643 1223455667789999999999999999999887 99999999987765533322  2


Q ss_pred             ccCEEEEEEcCCC--CEEEE-EeCCCcEEEEECCCCee--EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-
Q 011457          217 IEQVRGLAVSSKH--TYMFS-AGDDKQVKCWDLEQNKV--IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-  290 (485)
Q Consensus       217 ~~~V~~l~~s~~~--~~l~s-~~~dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-  290 (485)
                      .+.+.. ..++..  ..|++ .-.++.|.++|-....+  ...-.-|..+|.++.+++.++.+++....|.|..|.... 
T Consensus        98 Pg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~  176 (558)
T KOG0882|consen   98 PGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP  176 (558)
T ss_pred             CCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence            222221 122221  13333 34678999999765432  222356999999999999999999999999999999873 


Q ss_pred             -----CceEEE---------eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---------------
Q 011457          291 -----KMQIFA---------LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---------------  341 (485)
Q Consensus       291 -----~~~~~~---------~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---------------  341 (485)
                           .+....         +........++.|+|++..+.+-+.|..|++++.++++.++.+..               
T Consensus       177 ~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l  256 (558)
T KOG0882|consen  177 FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL  256 (558)
T ss_pred             ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence                 111111         222345778999999999999999999999999999876543311               


Q ss_pred             -----------------CC-CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeee
Q 011457          342 -----------------HK-KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNM  380 (485)
Q Consensus       342 -----------------~~-~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~  380 (485)
                                       +. ..-..+.|...+++|+.++--+|+++++.++...+.+
T Consensus       257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL  313 (558)
T ss_pred             ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence                             11 1235678888999999999999999999999877654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=4.9e-08  Score=98.43  Aligned_cols=182  Identities=18%  Similarity=0.244  Sum_probs=138.1

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      .+.+.|++++  +++|+-|+.+|.|++++... .. .+...|...      ..+|.|+++|+.||+|.|-.+.+.+...+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            4678888886  78999999999999999753 33 333335443      66899999999999999999998888777


Q ss_pred             ecccCCceEEEEEecC-----CCEEEEEECCCcEEEEECC---CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457          255 YHGHLSGVYCLGLHPT-----IDILLTGGRDSVCRVWDIR---TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK  326 (485)
Q Consensus       255 ~~~h~~~v~~l~~~~~-----~~~l~sg~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~  326 (485)
                      +. ...++.+++++|+     .+.+++||.-| +.++.-+   ....+ .+..-.++|.++.|.  |++++-++.+| |+
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~  182 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VK  182 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cE
Confidence            76 5688999999997     56899999998 7776533   22222 445567899999996  77888777666 89


Q ss_pred             EEECCCCeEEeEeccCCCceE------EEEECCCCCEEEEEcCCCEEEEECCC
Q 011457          327 FWDLRYGKTMLTLTHHKKSVR------AMALHPTEDCFASASAENIKKFNLPK  373 (485)
Q Consensus       327 iwd~~~~~~~~~~~~~~~~v~------~l~~~p~~~~l~~~~~~~i~i~d~~~  373 (485)
                      +||+.+.+.+..+......++      .+.|.+ ...++.|-.+.|.+..++.
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKICSIKK  234 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEEEEEec
Confidence            999999988887766554443      456654 4566777778888887763

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4.8e-08  Score=90.96  Aligned_cols=254  Identities=15%  Similarity=0.190  Sum_probs=156.1

Q ss_pred             EEEEECCCCceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEE
Q 011457          199 IKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLT  276 (485)
Q Consensus       199 I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s  276 (485)
                      |++.+..+.+...-+.+|...|..++|+|..+ ++..++.+.+|+|.|+++..++..+..+ ..+++++|.-+ .++|+.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            67777666666666778889999999999877 7888999999999999999999999877 88999999886 458888


Q ss_pred             EECCCcEEEEECCCCceE-EEecc--CCccEEEEEE------cCCCCEEEEEeCCCCEEEEECCCC--eEEeEec-cCCC
Q 011457          277 GGRDSVCRVWDIRTKMQI-FALAG--HDNTVCSVFT------RPTDPQVVTGSHDSTIKFWDLRYG--KTMLTLT-HHKK  344 (485)
Q Consensus       277 g~~dg~i~iwd~~~~~~~-~~~~~--~~~~v~~l~~------~~~~~~l~s~s~dg~I~iwd~~~~--~~~~~~~-~~~~  344 (485)
                      |..+|.|.|||++..+.. ..+.+  ...+|..++.      .+.+.+++..+.  .+..|++...  .....+. ...+
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG  331 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPG  331 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence            899999999999865432 22221  2234444433      223444444443  2456655432  1122121 1244


Q ss_pred             ceEEEEECCCCCEEEEEcCCC---------EEEEECCCCceeeeeccCC-ccc------EEEEEeCCCC--eEEEEeCCC
Q 011457          345 SVRAMALHPTEDCFASASAEN---------IKKFNLPKGEFLHNMLSQQ-KTI------INSMAVNEEG--VLATGGDNG  406 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~---------i~i~d~~~~~~~~~~~~~~-~~~------i~~~~~~~~~--~l~sg~~dg  406 (485)
                      ...++.+++..+.++.....+         +.-.|..+|..+......+ +..      -..+.-.+++  .+.+|++..
T Consensus       332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn  411 (463)
T KOG1645|consen  332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN  411 (463)
T ss_pred             ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence            566666666544443332210         1112333343333222222 111      1122222333  556677778


Q ss_pred             cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CC-CEEEEEECCCcEEEecCCC
Q 011457          407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TG-SRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g-~~L~s~~~Dg~I~iW~~~~  465 (485)
                      .+.+||..+++..+.+..         ...|.+++... +| .+|++- .|..++||+.+.
T Consensus       412 ~lil~D~~s~evvQ~l~~---------~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es  462 (463)
T KOG1645|consen  412 ELILQDPHSFEVVQTLAL---------SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES  462 (463)
T ss_pred             eeEEeccchhheeeeccc---------CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence            999999999988877653         35577776543 33 355544 567899998653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.92  E-value=4.5e-06  Score=77.42  Aligned_cols=227  Identities=14%  Similarity=0.137  Sum_probs=157.1

Q ss_pred             eEEEEEcc-CCCEEEEEeCCC-eEEEEECCCCceEEEEcccccCE--EEEEEcCCCCEEEEEe-----CCCcEEEEECC-
Q 011457          178 VRSVAFDH-SNTWFCTGSADR-TIKIWDVAKGTLKLTLTGHIEQV--RGLAVSSKHTYMFSAG-----DDKQVKCWDLE-  247 (485)
Q Consensus       178 V~~l~~sp-~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~~-----~dg~V~iwd~~-  247 (485)
                      ...++.+| ....++.+-.-| ...+||..+++....+....+.-  -.-.|++||++|++.-     ..|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34677888 455566666554 57889999998887665432221  1358999999999874     35899999998 


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEEC------------------CCcEEEEECCCCceEEE--e--ccCCccEE
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR------------------DSVCRVWDIRTKMQIFA--L--AGHDNTVC  305 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~------------------dg~i~iwd~~~~~~~~~--~--~~~~~~v~  305 (485)
                      +.+.+..+..|.-....+.+.||++.|+++..                  +-++.+.|..+++.+..  +  .-|...|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            67888889888777888999999987777632                  23566777788887766  4  33778899


Q ss_pred             EEEEcCCCCEEEEEeCCCC-------EEEEECCCCeEEeEec-------cCCCceEEEEECCCCCEEEEEcCCC--EEEE
Q 011457          306 SVFTRPTDPQVVTGSHDST-------IKFWDLRYGKTMLTLT-------HHKKSVRAMALHPTEDCFASASAEN--IKKF  369 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~dg~-------I~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~  369 (485)
                      .+++.++|..++..-..|.       |-+++.  +..+..+.       ....-+-+|++++++.++++.+-.+  +.+|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            9999999866555443332       333332  22222222       2235688999999999988877665  9999


Q ss_pred             ECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457          370 NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF  410 (485)
Q Consensus       370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i  410 (485)
                      |..++..+...   .-..+..++..+++++++.+ .|.+..
T Consensus       245 d~~tg~~~~~~---~l~D~cGva~~~~~f~~ssG-~G~~~~  281 (305)
T PF07433_consen  245 DAATGRLLGSV---PLPDACGVAPTDDGFLVSSG-QGQLIR  281 (305)
T ss_pred             ECCCCCEeecc---ccCceeeeeecCCceEEeCC-CccEEE
Confidence            99999987664   23346677777777555544 455433

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.90  E-value=9e-07  Score=90.49  Aligned_cols=278  Identities=15%  Similarity=0.144  Sum_probs=169.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEccccc------CEE--EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE------QVR--GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH  258 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~------~V~--~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h  258 (485)
                      +..++.++.++.|.-.|..+++.+..+.....      .+.  .+... ++..++.++.++.|..+|.++++.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45577777889999999999998877654322      010  11111 2257888889999999999999999887543


Q ss_pred             CCc-----e-EEEEEecCCCEEEEEE---------CCCcEEEEECCCCceEEEeccCCc--------------------c
Q 011457          259 LSG-----V-YCLGLHPTIDILLTGG---------RDSVCRVWDIRTKMQIFALAGHDN--------------------T  303 (485)
Q Consensus       259 ~~~-----v-~~l~~~~~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------~  303 (485)
                      ...     + ....+.  +..++.++         .+|.+..+|..+++.+..+.....                    .
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            221     1 111222  24555554         368899999999999887754211                    0


Q ss_pred             E-EEEEEcCCCCEEEEEeCCC------------------CEEEEECCCCeEEeEeccCCCceE------EEEEC----CC
Q 011457          304 V-CSVFTRPTDPQVVTGSHDS------------------TIKFWDLRYGKTMLTLTHHKKSVR------AMALH----PT  354 (485)
Q Consensus       304 v-~~l~~~~~~~~l~s~s~dg------------------~I~iwd~~~~~~~~~~~~~~~~v~------~l~~~----p~  354 (485)
                      + .+..+.+.+..++.++.++                  .|.-+|..+|+.+..+........      ...+.    -+
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~  297 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD  297 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence            1 1234455567888887665                  699999999999887643211110      00111    12


Q ss_pred             CC---EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEE------------------eCCCcEEEEe
Q 011457          355 ED---CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATG------------------GDNGSLWFWD  412 (485)
Q Consensus       355 ~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg------------------~~dg~I~iwd  412 (485)
                      +.   .++.++.++ +..+|..+|+.+......    ...+..++ +.++.+                  ..+|.+.-.|
T Consensus       298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD  372 (488)
T cd00216         298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD  372 (488)
T ss_pred             CCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence            32   455555555 999999999988775322    11223344 323222                  2467899999


Q ss_pred             CCCCcccccceeeeccCCCCCCccE--EEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCCC
Q 011457          413 WKSGHNFQQAQTIVQPGSLDSEAGI--YALSYDVTGSRLVTCEADKTIKMWREDETATPETHPL  474 (485)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~V--~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~~  474 (485)
                      ..+|+.+..................  ..+.  ..+..|+.++.||.|+.+|.++++..-..++
T Consensus       373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            9999876655432000000000011  1122  2467888899999999999988886554443

The alignment model contains an 8-bladed beta-propeller.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.90  E-value=2.4e-08  Score=87.87  Aligned_cols=233  Identities=19%  Similarity=0.285  Sum_probs=137.1

Q ss_pred             CCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce-EEEEcccccCEEEEEEcCCCCEE
Q 011457          154 SKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKHTYM  232 (485)
Q Consensus       154 ~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l  232 (485)
                      ..|.+..-..+++++   ..|+++=.+-+.+--++.++++..||.+.+++.+.... ...+..-...-.+.++...++++
T Consensus        71 ~~~~rt~~i~~~~~~---a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i  147 (319)
T KOG4714|consen   71 SLWERDDGIDPFKVL---AKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSI  147 (319)
T ss_pred             chhhcccCcCceeee---eccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEE
Confidence            456555444444444   45666555555555677799999999999999765211 11111111111122333344555


Q ss_pred             EEEe-----CCCcEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceE-EEeccCCccEE
Q 011457          233 FSAG-----DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQI-FALAGHDNTVC  305 (485)
Q Consensus       233 ~s~~-----~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~v~  305 (485)
                      .++.     .-+..++|+++..+.+..-+.-...|.+++-+|. .+.+++|+.||.+.+||.+..... ..+..|+..+.
T Consensus       148 ~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~  227 (319)
T KOG4714|consen  148 LSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW  227 (319)
T ss_pred             ecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh
Confidence            4442     2234566666543332222223344999999996 457888899999999999987543 34568999999


Q ss_pred             EEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC---CC-ceeeee
Q 011457          306 SVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP---KG-EFLHNM  380 (485)
Q Consensus       306 ~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~---~~-~~~~~~  380 (485)
                      .+-|+|. ...|+++++||.+-.||..+ +.+             ..+++.        +.+..|=-.   +. -.+..+
T Consensus       228 eV~FHpk~p~~Lft~sedGslw~wdas~-~~l-------------~i~~~~--------s~~s~WLsgD~v~s~i~i~~l  285 (319)
T KOG4714|consen  228 EVHFHPKNPEHLFTCSEDGSLWHWDAST-TFL-------------SISNQA--------SVISSWLSGDPVKSRIEITSL  285 (319)
T ss_pred             heeccCCCchheeEecCCCcEEEEcCCC-ceE-------------EecCcc--------ccccccccCCcccceEeeecc
Confidence            9999995 56899999999999999764 111             111111        112223110   00 111122


Q ss_pred             ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457          381 LSQQKTIINSMAVNEEGVLATGGDNGSLWFWD  412 (485)
Q Consensus       381 ~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd  412 (485)
                      +......|+++.+... .|++|++-+-|++++
T Consensus       286 l~~~~~SinsfDV~g~-~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  286 LPSRSLSINSFDVLGP-CLVCGTDAEAIYLTR  316 (319)
T ss_pred             ccccceeeeeeeccCc-eEEeccccceEEEec
Confidence            2333344555555433 799999999999875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.7e-08  Score=93.85  Aligned_cols=266  Identities=17%  Similarity=0.141  Sum_probs=183.2

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC---CceEEEEcccccCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK---GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCWDLEQ  248 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~V~iwd~~~  248 (485)
                      -|++.|+.+... ..+++.+++.||.++.|.-..   -+.+..+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            488888887665 567999999999999998543   1344556778899999999999999999777 99999999988


Q ss_pred             CeeEEEecc--cCCceEEEEEecCCC---EEE-EEECCCcEEEEECCCCce--EEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457          249 NKVIRSYHG--HLSGVYCLGLHPTID---ILL-TGGRDSVCRVWDIRTKMQ--IFALAGHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       249 ~~~~~~~~~--h~~~v~~l~~~~~~~---~l~-sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      -..+..++.  ..+.+. +..++ |.   .|+ +.-.+|.+.++|-....+  ...-.-|..+|..+.+.+.+..+++..
T Consensus        86 ~DminmiKL~~lPg~a~-wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAE-WVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             cchhhhcccccCCCceE-EecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            766544331  222222 11222 21   333 334578999999875542  333346999999999999999999999


Q ss_pred             CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457          321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL  399 (485)
Q Consensus       321 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  399 (485)
                      ..|.|.-|....  .   +....   ..+.                  |.+.....+..+ ........++.+++++ .+
T Consensus       164 ~~gmVEyWs~e~--~---~qfPr---~~l~------------------~~~K~eTdLy~f-~K~Kt~pts~Efsp~g~qi  216 (558)
T KOG0882|consen  164 ISGMVEYWSAEG--P---FQFPR---TNLN------------------FELKHETDLYGF-PKAKTEPTSFEFSPDGAQI  216 (558)
T ss_pred             ccceeEeecCCC--c---ccCcc---cccc------------------ccccccchhhcc-cccccCccceEEccccCcc
Confidence            999999998762  1   11011   1112                  222222333332 3445667889999999 88


Q ss_pred             EEEeCCCcEEEEeCCCCcccccceeeeccCC--------C-----------------CCCccEEEEEEccCCCEEEEEEC
Q 011457          400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS--------L-----------------DSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~--------~-----------------~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      .+-+.|..|+++++++|+..+.+........        +                 .....-+.++|+..|++|+-|+-
T Consensus       217 stl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~  296 (558)
T KOG0882|consen  217 STLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI  296 (558)
T ss_pred             cccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence            8888999999999999988776543221100        0                 01123456789999999998877


Q ss_pred             CCcEEEecCCCCCCC
Q 011457          455 DKTIKMWREDETATP  469 (485)
Q Consensus       455 Dg~I~iW~~~~~~~~  469 (485)
                      =| |+|.+++++...
T Consensus       297 ~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  297 LG-IKVINLDTNTVV  310 (558)
T ss_pred             ee-EEEEEeecCeEE
Confidence            66 888888877643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.88  E-value=5.3e-06  Score=76.93  Aligned_cols=228  Identities=16%  Similarity=0.190  Sum_probs=155.7

Q ss_pred             EEEEEEcCC-CCEEEEEeCCC-cEEEEECCCCeeEEEecccCCce--EEEEEecCCCEEEEEEC-----CCcEEEEECC-
Q 011457          220 VRGLAVSSK-HTYMFSAGDDK-QVKCWDLEQNKVIRSYHGHLSGV--YCLGLHPTIDILLTGGR-----DSVCRVWDIR-  289 (485)
Q Consensus       220 V~~l~~s~~-~~~l~s~~~dg-~V~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~sg~~-----dg~i~iwd~~-  289 (485)
                      ...++.+|. ...++.+-.-| ...+||..+++....+....+.-  -.-.|++||++|++.-.     .|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            346777884 44555554444 57889999998887664332221  24679999999998644     5889999998 


Q ss_pred             CCceEEEeccCCccEEEEEEcCCCCEEEEEe------------------CCCCEEEEECCCCeEEeE--e--ccCCCceE
Q 011457          290 TKMQIFALAGHDNTVCSVFTRPTDPQVVTGS------------------HDSTIKFWDLRYGKTMLT--L--THHKKSVR  347 (485)
Q Consensus       290 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s------------------~dg~I~iwd~~~~~~~~~--~--~~~~~~v~  347 (485)
                      +.+.+..+..|.-.-..+.+.|+++.|+++.                  .+.++...|..+|+.+..  +  ..|..+|+
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            6677778877777777788999998777653                  234567778888888776  4  33677999


Q ss_pred             EEEECCCCCEEEEEcCCC--------EEEEECCCCceeeee------ccCCcccEEEEEeCCCC-eE-EEEeCCCcEEEE
Q 011457          348 AMALHPTEDCFASASAEN--------IKKFNLPKGEFLHNM------LSQQKTIINSMAVNEEG-VL-ATGGDNGSLWFW  411 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~~--------i~i~d~~~~~~~~~~------~~~~~~~i~~~~~~~~~-~l-~sg~~dg~I~iw  411 (485)
                      .+++.++|..++..-..+        +.+++.  ++.+..+      ...-...+-+++++.++ .+ +++-..|.+.+|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            999999999887764332        333333  3222222      12334679999999998 44 555567899999


Q ss_pred             eCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       412 d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      |..++..+.....          ..+..++-..++ ++++.+. |.+...
T Consensus       245 d~~tg~~~~~~~l----------~D~cGva~~~~~-f~~ssG~-G~~~~~  282 (305)
T PF07433_consen  245 DAATGRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ-GQLIRL  282 (305)
T ss_pred             ECCCCCEeecccc----------CceeeeeecCCc-eEEeCCC-ccEEEc
Confidence            9999987765432          346677777766 6665544 544333

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.88  E-value=7.5e-07  Score=82.19  Aligned_cols=188  Identities=13%  Similarity=0.105  Sum_probs=125.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cccC---Cc
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHL---SG  261 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~---~~  261 (485)
                      ++..+++++.++.|..||..+|+.+..+.. ...+.... ...+..+++++.++.|..+|..+|+.+... ....   ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            566777778999999999999999887764 22211111 224455677778889999999999999884 3221   11


Q ss_pred             eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc----------EEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457          262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT----------VCSVFTRPTDPQVVTGSHDSTIKFWDLR  331 (485)
Q Consensus       262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~l~~~~~~~~l~s~s~dg~I~iwd~~  331 (485)
                      ........+++.++.+..++.|..+|+++|+.+.........          +..-....++ .++.++.++.+..+|+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~  191 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA  191 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence            223333334788999999999999999999998888654322          1222222344 78888888864444999


Q ss_pred             CCeEEeEeccCCCceEEEEECCCCCEEEEEc-CCCEEEEECCCCceeee
Q 011457          332 YGKTMLTLTHHKKSVRAMALHPTEDCFASAS-AENIKKFNLPKGEFLHN  379 (485)
Q Consensus       332 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-~~~i~i~d~~~~~~~~~  379 (485)
                      +++.+....  ...+..+ ....+..++.++ .+.+..||+.+|+.+..
T Consensus       192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            999775433  2333332 234566666555 44499999999987754

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.87  E-value=7.9e-07  Score=84.67  Aligned_cols=173  Identities=15%  Similarity=0.086  Sum_probs=137.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeeEEEecccCCceEE
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK-QVKCWDLEQNKVIRSYHGHLSGVYC  264 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-~V~iwd~~~~~~~~~~~~h~~~v~~  264 (485)
                      +|++++..|. |...|.+...+-.+.  -+|.+.|.-..+.-++.-++.|..|| .+-|+|.++++..+ +...-+.|.+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEE
Confidence            6788888876 678887765554433  34677798888888888899999999 99999998776544 4557788999


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC----CEEEEECCCCeEEeEec
Q 011457          265 LGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS----TIKFWDLRYGKTMLTLT  340 (485)
Q Consensus       265 l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg----~I~iwd~~~~~~~~~~~  340 (485)
                      +..+++|++++.+.....+.+.|+.++.....-+...+-|+.+.|+|++++++-+--+|    .|+++|+..++.....+
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT  486 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT  486 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence            99999999999999999999999999987766667788999999999999999877666    59999999877654432


Q ss_pred             cCCCceEEEEECCCCCEEEEEcC
Q 011457          341 HHKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       341 ~~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                       ...-=.+-+|.|++++|.--+.
T Consensus       487 -~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         487 -PTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             -CcccccCcccCCCCcEEEEEec
Confidence             2333345678899987765543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.87  E-value=9.5e-09  Score=65.35  Aligned_cols=39  Identities=36%  Similarity=0.774  Sum_probs=37.4

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      +++++++.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            478899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=9.8e-09  Score=93.65  Aligned_cols=150  Identities=15%  Similarity=0.254  Sum_probs=120.9

Q ss_pred             EEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eeEEEecccCCceEEE
Q 011457          191 CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-----KVIRSYHGHLSGVYCL  265 (485)
Q Consensus       191 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-----~~~~~~~~h~~~v~~l  265 (485)
                      ++.+.+-.|-+-|+++|... .|. ..+.|.++.|...+++++.|+.+|.|..+|++.+     .+...+. |.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence            44455677889999887543 344 5688999999999999999999999999999764     3445554 89999999


Q ss_pred             EEec-CCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEE--EEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457          266 GLHP-TIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL  339 (485)
Q Consensus       266 ~~~~-~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l--~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  339 (485)
                      ..-. ++.+|++.+.+|.|.+||++--++   +....+|-+.-.-+  .+.+.+..+++++.|...+||.++.+..+.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            8877 778999999999999999997666   88888887644333  44566778999999999999999999998887


Q ss_pred             ccCC
Q 011457          340 THHK  343 (485)
Q Consensus       340 ~~~~  343 (485)
                      ....
T Consensus       385 pf~~  388 (425)
T KOG2695|consen  385 PFPY  388 (425)
T ss_pred             CCCC
Confidence            6543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.86  E-value=4.6e-08  Score=88.13  Aligned_cols=209  Identities=13%  Similarity=0.212  Sum_probs=141.6

Q ss_pred             CCceEEEEEecCCCEEEEEECCCcEEEEECCCCc-e----EEEeccCC------------ccEEEEEEcCCC--CEEEEE
Q 011457          259 LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-Q----IFALAGHD------------NTVCSVFTRPTD--PQVVTG  319 (485)
Q Consensus       259 ~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~----~~~~~~~~------------~~v~~l~~~~~~--~~l~s~  319 (485)
                      ...|+++.|...|.+|++|...|.|.+|.-.... +    ...+++|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4568999999999999999999999999765332 1    12244443            356777776544  357778


Q ss_pred             eCCCCEEEEECCCCe------------------------------------------EEeEe-ccCCCceEEEEECCCCC
Q 011457          320 SHDSTIKFWDLRYGK------------------------------------------TMLTL-THHKKSVRAMALHPTED  356 (485)
Q Consensus       320 s~dg~I~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~l~~~p~~~  356 (485)
                      +.|.+|++|.+....                                          +.+.+ ..|...|.++.|..|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            899999999875330                                          00001 23555688999999999


Q ss_pred             EEEEEcCCCEEEEECCCCceeeee--ccCCc-----ccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccccc----ce
Q 011457          357 CFASASAENIKKFNLPKGEFLHNM--LSQQK-----TIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQ----AQ  423 (485)
Q Consensus       357 ~l~~~~~~~i~i~d~~~~~~~~~~--~~~~~-----~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~----~~  423 (485)
                      .++++.+-.|.+|++.-......+  ...+.     ..|++..|+|..  .+.-.++.|.|++-|++.......    +.
T Consensus       186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe  265 (460)
T COG5170         186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE  265 (460)
T ss_pred             eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence            999988888999988644332222  12222     458888899876  777888899999999984321110    10


Q ss_pred             eeecc----CCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          424 TIVQP----GSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       424 ~~~~~----~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      ....+    ...+-...|..+.|+++|+++++-+. -+|+|||+.....
T Consensus       266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~  313 (460)
T COG5170         266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN  313 (460)
T ss_pred             hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence            00000    00112345889999999999988754 5899999986654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.85  E-value=7e-08  Score=84.95  Aligned_cols=240  Identities=16%  Similarity=0.179  Sum_probs=141.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE------------ecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457          220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS------------YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~------------~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd  287 (485)
                      |+.+.+..+ ..|+++..++.+.....-.+.++..            +..|.++-.+-+.+-.++-+++++.||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            445555433 3466666666665555443333222            222332222222333456799999999999999


Q ss_pred             CCCCceE-EEeccCCccEEEEEEcCCCCEEEEEe-----CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCC-EEEE
Q 011457          288 IRTKMQI-FALAGHDNTVCSVFTRPTDPQVVTGS-----HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED-CFAS  360 (485)
Q Consensus       288 ~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~~  360 (485)
                      .+.-..+ ..+......-.+.++...++.+.++.     .-+..+.|+++..+....-......|.+++-+|..+ .+++
T Consensus       118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c  197 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC  197 (319)
T ss_pred             chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence            8752111 11111111122233333444444432     224566777765544433333344599999999765 4555


Q ss_pred             EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccccccee-----ee------
Q 011457          361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQT-----IV------  426 (485)
Q Consensus       361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~-----~~------  426 (485)
                      |++++ +.+||.++......++..|+..++.+.|+|..  .|+++++||.+..||..+.-.-...+.     +.      
T Consensus       198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~  277 (319)
T KOG4714|consen  198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVK  277 (319)
T ss_pred             ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCccc
Confidence            66666 99999999988888889999999999999987  999999999999999764211000000     00      


Q ss_pred             -----ccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          427 -----QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       427 -----~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                           .+........|+  .|+--|..|++|+.-+.|++++
T Consensus       278 s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  278 SRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence                 000001111233  3555688999999999999875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=1e-08  Score=93.51  Aligned_cols=146  Identities=22%  Similarity=0.330  Sum_probs=117.9

Q ss_pred             EEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-----ceEEEeccCCccEEEE
Q 011457          233 FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-----MQIFALAGHDNTVCSV  307 (485)
Q Consensus       233 ~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~l  307 (485)
                      ++.+.+-.|-+-|++++-. +.|. ..+.|.++.|+..+++++.|+++|.|..+|++.+     .+.+.+. |.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence            5666778899999987643 3344 6678999999999999999999999999999865     3445554 99999999


Q ss_pred             EEcC-CCCEEEEEeCCCCEEEEECCCCeE---EeEeccCCCceE--EEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          308 FTRP-TDPQVVTGSHDSTIKFWDLRYGKT---MLTLTHHKKSVR--AMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       308 ~~~~-~~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~--~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      ..-. ++++|++.+.+|.|++||++.-++   +..+.+|...-.  -+...+.+..++++++|. .++|.+..|..+.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            8776 788999999999999999998777   888888765332  334566677888888887 999999999988876


Q ss_pred             c
Q 011457          381 L  381 (485)
Q Consensus       381 ~  381 (485)
                      .
T Consensus       385 p  385 (425)
T KOG2695|consen  385 P  385 (425)
T ss_pred             C
Confidence            4

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=4.4e-07  Score=92.31  Aligned_cols=206  Identities=16%  Similarity=0.193  Sum_probs=147.8

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccC-EEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC-
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-VRGLAVSSKHTYMFSAGDDKQ-----VKCWDLEQN-  249 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~dg~-----V~iwd~~~~-  249 (485)
                      .|.|  |++.+..++.|+.+|.|.+.+ ++.+....+..+... |..+....+..+|++.++|+.     |+||+++.- 
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4444  567888999999999988887 445555778777777 665655556678998887764     999999643 


Q ss_pred             -----eeE---EEec----ccCCceEEEEEecCCCEEEEEECCCcEEEEECC---C-CceEEEeccCCccEEEEEEcCCC
Q 011457          250 -----KVI---RSYH----GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR---T-KMQIFALAGHDNTVCSVFTRPTD  313 (485)
Q Consensus       250 -----~~~---~~~~----~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~-~~~~~~~~~~~~~v~~l~~~~~~  313 (485)
                           .++   +.+.    ....++.+++.+.+-+.+++|-.||.|..+.-+   . +....-...-..+|+.+.+..++
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence                 233   2221    134678999999999999999999999988532   1 11122222346799999999888


Q ss_pred             CEEEEEeCCCCEEEEECCCCeE-EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCc
Q 011457          314 PQVVTGSHDSTIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQK  385 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~  385 (485)
                      ..++-...-..|.+|.+....+ ...+..++.++.|-.+++....|++++...+.+|+.........+..++.
T Consensus       184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k  256 (933)
T KOG2114|consen  184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK  256 (933)
T ss_pred             ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence            7733333445799999884332 45577888899999999887779999999999999887666666543444

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.81  E-value=1.3e-07  Score=96.58  Aligned_cols=275  Identities=15%  Similarity=0.170  Sum_probs=176.0

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      ..-|.|.++.|.+....+..|+..|.+.-+-+...+-...+..|. ..|+.+.....  .+++.+. ..++ +-.+.|..
T Consensus        52 ~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~--~i~~ls~-~alr-~~~r~gl~  127 (1118)
T KOG1275|consen   52 ASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTES--GIFTLSK-TALR-ATTRQGLP  127 (1118)
T ss_pred             cccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhh--hheeeeH-HHhh-hhhccCce
Confidence            445688888898888888888887766555444333333443332 11222211111  1222221 1111 11233334


Q ss_pred             EEEecccC--CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          252 IRSYHGHL--SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       252 ~~~~~~h~--~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                      +..+....  .-...+..  ++..++.|+....+..+|+++.+......-..+.|.-+..  +++.+.+|...|+|.+-|
T Consensus       128 ~~~~~~~s~~~M~~~~~~--~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD  203 (1118)
T KOG1275|consen  128 VFDFTCPSMTKMASSLHM--GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRD  203 (1118)
T ss_pred             eecccCCCHHHHHHHhcc--CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeec
Confidence            33332111  11111212  4467888888888999999998877666544545665554  678999999999999999


Q ss_pred             CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC---------C-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--
Q 011457          330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE---------N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--  397 (485)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---------~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--  397 (485)
                      .++.+.+.++..|.+.|.++..  .|+.|++|+-.         . +++||++..+.+.-+......  .-+.|.|.-  
T Consensus       204 ~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t  279 (1118)
T KOG1275|consen  204 PNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTT  279 (1118)
T ss_pred             CCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccc
Confidence            9999999999999999987766  57888877543         1 889999887765544222222  344566654  


Q ss_pred             eEEEEeCCCcEEEEeCCCCc-ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          398 VLATGGDNGSLWFWDWKSGH-NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .+++.+..|...+-|..+-. ........ .    .....+.+++++++|+.|+.|..+|.|.+|.-.
T Consensus       280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~----p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  280 RLAVTSQSGQFQFVDTATLSNPPAGVKMV-N----PNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             eEEEEecccceeeccccccCCCccceeEE-c----cCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            88999999999999843321 11111111 1    123459999999999999999999999999843

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=5.7e-08  Score=96.77  Aligned_cols=237  Identities=18%  Similarity=0.317  Sum_probs=158.3

Q ss_pred             eEEEEEccCC--CEEEEEeCCCeEEEEECCC---CceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-
Q 011457          178 VRSVAFDHSN--TWFCTGSADRTIKIWDVAK---GTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNK-  250 (485)
Q Consensus       178 V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~-  250 (485)
                      |-.+.|+|..  .+-++......-.+|++..   ......+.+|...|+.+-|++.. ..+++++.|-.|..||+++.. 
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~  149 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR  149 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence            5566777632  3334444445567898853   34556788999999999999876 468899999999999998753 


Q ss_pred             eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEE
Q 011457          251 VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFW  328 (485)
Q Consensus       251 ~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iw  328 (485)
                      .+..+..-......+.|+.....+++.+....|++||++.+ .++..+++|...|..+.|.. ....+.+.+.||+|++|
T Consensus       150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw  229 (1081)
T KOG0309|consen  150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW  229 (1081)
T ss_pred             ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence            45555555566778999886555666677778999999866 46778888988999988865 34568899999999999


Q ss_pred             ECCCCeEEe-EeccCCCceEEEEECCCCCEEEEEc--CCC-EEEEECC---------CC-ceeeeeccCCcccEEEEEeC
Q 011457          329 DLRYGKTML-TLTHHKKSVRAMALHPTEDCFASAS--AEN-IKKFNLP---------KG-EFLHNMLSQQKTIINSMAVN  394 (485)
Q Consensus       329 d~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~~~~--~~~-i~i~d~~---------~~-~~~~~~~~~~~~~i~~~~~~  394 (485)
                      |........ .......+|..-.+.|-|.-.+..-  .++ +.+++.+         ++ ..++.+ .+|...|....|-
T Consensus       230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~eFlWR  308 (1081)
T KOG0309|consen  230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLEFLWR  308 (1081)
T ss_pred             cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee-cCcchHHHHHhhh
Confidence            987543222 1222344666666666554322221  111 3333332         22 344554 4555554433332


Q ss_pred             --------CCC---eEEEEeCCCcEEEEeCCC
Q 011457          395 --------EEG---VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       395 --------~~~---~l~sg~~dg~I~iwd~~~  415 (485)
                              .+.   .|++-+.|..+++|-+.+
T Consensus       309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                    121   899999999999998764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.77  E-value=2.1e-07  Score=94.99  Aligned_cols=181  Identities=13%  Similarity=0.170  Sum_probs=140.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEE
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL  265 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l  265 (485)
                      ++..++.|+....+..+|+.+.+......-..+.|.-+..  +++++++|...|+|.+-|..+.+.++++..|.+.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            4456778887788899999988877766655555665554  67899999999999999999999999999999999877


Q ss_pred             EEecCCCEEEEEEC---------CCcEEEEECCCCceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECC---C
Q 011457          266 GLHPTIDILLTGGR---------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLR---Y  332 (485)
Q Consensus       266 ~~~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~---~  332 (485)
                      ..  .|+.|+++|.         |..|+|||++..+.+.-+..+.++ .-+.|.|. ...+++++..|...+-|..   +
T Consensus       224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence            65  4788999886         556899999988777666555444 45667775 3468888999999999943   2


Q ss_pred             C-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEEC
Q 011457          333 G-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNL  371 (485)
Q Consensus       333 ~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~  371 (485)
                      . ..+..+......+..+++++++..++.+..++ |.+|.-
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            2 12334444555699999999999999998877 999973

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=6e-09  Score=105.48  Aligned_cols=220  Identities=12%  Similarity=0.121  Sum_probs=160.4

Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--cEE
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--VCR  284 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--~i~  284 (485)
                      .+...+|..|....+|++|+-+.++|++|+..|.|++|++.+|.....+.+|.+.|+.+.-+.+|..+++.+.-.  -..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            445667788899999999999999999999999999999999999999999999999999999999777765543  467


Q ss_pred             EEECCC-CceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec-c---CCCceEEEEECCCCCEEE
Q 011457          285 VWDIRT-KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT-H---HKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       285 iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~---~~~~v~~l~~~p~~~~l~  359 (485)
                      +|++.+ +...+.+.    .-.++.|+..-.+-+.|+......+||+.++..+.++. +   ....-+...|+|+..+++
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            899864 34444443    34567777665555667777789999999988776632 2   222346788999988776


Q ss_pred             EEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEE
Q 011457          360 SASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIY  438 (485)
Q Consensus       360 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~  438 (485)
                      --    -.+||.+..+.++.|..-.  ..-.-.|+|+| .++.-+     .|||+++.+.+......          .-.
T Consensus      1247 nd----GvLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L----------dqc 1305 (1516)
T KOG1832|consen 1247 ND----GVLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL----------DQC 1305 (1516)
T ss_pred             eC----ceeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc----------cce
Confidence            32    3689998887776653221  12233578888 555444     38999998777665432          234


Q ss_pred             EEEEccCCCEEEE
Q 011457          439 ALSYDVTGSRLVT  451 (485)
Q Consensus       439 ~l~~s~~g~~L~s  451 (485)
                      .+.|+..|..+..
T Consensus      1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred             EEEeccCccchhh
Confidence            5678777766554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.73  E-value=1.5e-05  Score=81.67  Aligned_cols=229  Identities=12%  Similarity=0.147  Sum_probs=145.6

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcccccC-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCeeE
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-----VR-GLAVSSKHTYMFSAG---------DDKQVKCWDLEQNKVI  252 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-----V~-~l~~s~~~~~l~s~~---------~dg~V~iwd~~~~~~~  252 (485)
                      ..++.++.++.|.-+|.++|+.+..+......     +. ...+. + ..++.++         .+|.|..+|.++|+.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            67888889999999999999998877643221     11 11222 2 3455543         4688999999999988


Q ss_pred             EEecccCC--------------------ce-EEEEEecCCCEEEEEECCC------------------cEEEEECCCCce
Q 011457          253 RSYHGHLS--------------------GV-YCLGLHPTIDILLTGGRDS------------------VCRVWDIRTKMQ  293 (485)
Q Consensus       253 ~~~~~h~~--------------------~v-~~l~~~~~~~~l~sg~~dg------------------~i~iwd~~~~~~  293 (485)
                      ..+.....                    .| ...++.+.+..++.++.++                  .|.-+|..+++.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            87753211                    01 1234455567788887665                  799999999999


Q ss_pred             EEEeccCCccE------EEEEEc----CCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEE
Q 011457          294 IFALAGHDNTV------CSVFTR----PTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS  360 (485)
Q Consensus       294 ~~~~~~~~~~v------~~l~~~----~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~  360 (485)
                      ......-....      ....+.    -++.   .+++++.+|.+..+|.++|+.+......   ...+..+| +..++.
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~  344 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLG  344 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEc
Confidence            98875211111      111111    1232   5788889999999999999988775432   11233344 222221


Q ss_pred             E------------------cCCCEEEEECCCCceeeeeccCCc-------cc--EEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          361 A------------------SAENIKKFNLPKGEFLHNMLSQQK-------TI--INSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       361 ~------------------~~~~i~i~d~~~~~~~~~~~~~~~-------~~--i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                      .                  ..+.+.-+|..+|+.+.+......       ..  ...+.. .++.|++++.||.|+.+|.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~  423 (488)
T cd00216         345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDA  423 (488)
T ss_pred             cccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEEC
Confidence            1                  123488889999988877643310       11  112222 2348888899999999999


Q ss_pred             CCCcccccce
Q 011457          414 KSGHNFQQAQ  423 (485)
Q Consensus       414 ~~~~~~~~~~  423 (485)
                      ++|+.+...+
T Consensus       424 ~tG~~lW~~~  433 (488)
T cd00216         424 TTGKELWKFR  433 (488)
T ss_pred             CCCceeeEEE
Confidence            9999887754

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.4e-06  Score=81.40  Aligned_cols=244  Identities=11%  Similarity=0.114  Sum_probs=146.9

Q ss_pred             cceEEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVK  242 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~  242 (485)
                      ++....+.+|...|+.++|+|.++ ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-+. ++|..|-..|.|.
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            455557789999999999999777 7888999999999999999999999888 889999998765 6788888999999


Q ss_pred             EEECCCCeeE-EEecc--cCCceEEEEE------ecCCCEEEEEECCCcEEEEECCC--CceEEEec-cCCccEEEEEEc
Q 011457          243 CWDLEQNKVI-RSYHG--HLSGVYCLGL------HPTIDILLTGGRDSVCRVWDIRT--KMQIFALA-GHDNTVCSVFTR  310 (485)
Q Consensus       243 iwd~~~~~~~-~~~~~--h~~~v~~l~~------~~~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~-~~~~~v~~l~~~  310 (485)
                      |||++..+-. ..+.+  ...+|..++.      .+.+.+|+....+  +..|++.-  +.....+. +..+...++.+.
T Consensus       262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~  339 (463)
T KOG1645|consen  262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYH  339 (463)
T ss_pred             EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeec
Confidence            9999865422 12211  2234444333      2234445444433  45565532  11122121 234556666666


Q ss_pred             CCCCEEEEEeCC-C---CEE----EEECCCCeEEeEec-cC-CC------ceEEEEECCCCCEEEEEcCCC--EEEEECC
Q 011457          311 PTDPQVVTGSHD-S---TIK----FWDLRYGKTMLTLT-HH-KK------SVRAMALHPTEDCFASASAEN--IKKFNLP  372 (485)
Q Consensus       311 ~~~~~l~s~s~d-g---~I~----iwd~~~~~~~~~~~-~~-~~------~v~~l~~~p~~~~l~~~~~~~--i~i~d~~  372 (485)
                      +..+.++..... .   +++    --|...|..+.... .+ ..      .-..+.-.+++.+++..+++.  +.+||..
T Consensus       340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~  419 (463)
T KOG1645|consen  340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH  419 (463)
T ss_pred             CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence            644544443322 1   011    11223333332211 11 00      111222345566666555543  9999999


Q ss_pred             CCceeeeeccCCcccEEEEEeCCC---CeEEEEeCCCcEEEEeCC
Q 011457          373 KGEFLHNMLSQQKTIINSMAVNEE---GVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       373 ~~~~~~~~~~~~~~~i~~~~~~~~---~~l~sg~~dg~I~iwd~~  414 (485)
                      +++.++.+...  .++..++...-   ++|++-+ |..++||..+
T Consensus       420 s~evvQ~l~~~--epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  420 SFEVVQTLALS--EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             hhheeeecccC--cceeecceeecCCcchhhhee-cceEEEEecC
Confidence            99998886433  55555554432   2666555 4588888754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=4.4e-07  Score=91.93  Aligned_cols=271  Identities=12%  Similarity=0.120  Sum_probs=154.2

Q ss_pred             EEEEccCCCEEEEEeC----CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          180 SVAFDHSNTWFCTGSA----DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      -++|+|...+|++++-    .|.|-||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-...
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~   97 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV   97 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence            3457777777776653    47888885 6777554333 2233567999999989999999999999998877766666


Q ss_pred             cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec--cCC--c--cEEEEEEcCCCC------EEEEEeCCC
Q 011457          256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA--GHD--N--TVCSVFTRPTDP------QVVTGSHDS  323 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~--~--~v~~l~~~~~~~------~l~s~s~dg  323 (485)
                      ..|..+|..+.|+++|+.++++..-|.|.+|.......+....  .|.  .  ...+...++++.      ..++.+.+.
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~  177 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDES  177 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchh
Confidence            7899999999999999999999999999999886433332221  122  2  233444455532      123333333


Q ss_pred             CEE-EEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec---------cCCcccEEEEE-
Q 011457          324 TIK-FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML---------SQQKTIINSMA-  392 (485)
Q Consensus       324 ~I~-iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~---------~~~~~~i~~~~-  392 (485)
                      .+- .++.+..........        .-.|+|..|..+..++...|--.+|.......         ......+.++. 
T Consensus       178 alD~~fnwk~~~a~rs~~k--------sgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e  249 (1416)
T KOG3617|consen  178 ALDEPFNWKESLAERSDEK--------SGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIE  249 (1416)
T ss_pred             hhcccccCccchhhccccc--------cCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEee
Confidence            332 333331111111111        11357777777777773333333443322211         11111222211 


Q ss_pred             eCCCCeEE------------------EEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          393 VNEEGVLA------------------TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       393 ~~~~~~l~------------------sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      +-.+.++.                  .|+..|.|-+=.. +|    .+..... -.+.....++|++++..+..|..|..
T Consensus       250 ~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-sG----vLr~~eK-yg~e~ge~~~c~cY~~~~~~l~agt~  323 (1416)
T KOG3617|consen  250 FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-SG----VLRKSEK-YGLELGEGILCMCYGEKEIRLWAGTK  323 (1416)
T ss_pred             eceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-cc----cccCCcc-hhhhcCCceEEEEEeccceEEEeccc
Confidence            11111000                  1122222211110 01    0000000 11234567999999999999999999


Q ss_pred             CCcEEEecCCCC
Q 011457          455 DKTIKMWREDET  466 (485)
Q Consensus       455 Dg~I~iW~~~~~  466 (485)
                      .|.+.+|.-.+.
T Consensus       324 ~gnv~~w~~v~~  335 (1416)
T KOG3617|consen  324 EGNVTIWLDVNK  335 (1416)
T ss_pred             CCcEEEeeecCc
Confidence            999999975544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2e-06  Score=87.15  Aligned_cols=183  Identities=14%  Similarity=0.178  Sum_probs=139.7

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA  296 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  296 (485)
                      ...+.|++++  +++|+-|+.+|.|++++... .. .+...|...      .-+|.++++|+.||+|.|-.+-+.+....
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3456666665  57899999999999999763 33 333345443      55799999999999999999999888877


Q ss_pred             eccCCccEEEEEEcCC-----CCEEEEEeCCCCEEEEECCC--CeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Q 011457          297 LAGHDNTVCSVFTRPT-----DPQVVTGSHDSTIKFWDLRY--GKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKF  369 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~-----~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~  369 (485)
                      +. ...++.+++++|+     .+++++|+.-| +.++.-+-  .+....+....++|.++.|.  |.+++-+++.|+++|
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vy  184 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVY  184 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEE
Confidence            76 5678999999998     46899999988 88876432  12222455567899999995  889999999999999


Q ss_pred             ECCCCceeeeeccCCcc-----cEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          370 NLPKGEFLHNMLSQQKT-----IINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       370 d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      |...++.+..+...+..     ....+.|.++..|+.|=.| +|+|..++
T Consensus       185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             eccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence            99999888776544422     2446778888777777655 88888887

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.66  E-value=1.3e-05  Score=78.50  Aligned_cols=258  Identities=13%  Similarity=0.137  Sum_probs=146.7

Q ss_pred             ccCCCEEEEEe---------CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          184 DHSNTWFCTGS---------ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       184 sp~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      |||+++++...         ..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.++++.++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            57777776632         236799999998765543333 67788999999999988884 58899999887755433


Q ss_pred             eccc-----------------CCceEEEEEecCCCEEEEEECC-C-----------------------------------
Q 011457          255 YHGH-----------------LSGVYCLGLHPTIDILLTGGRD-S-----------------------------------  281 (485)
Q Consensus       255 ~~~h-----------------~~~v~~l~~~~~~~~l~sg~~d-g-----------------------------------  281 (485)
                      -...                 -+.-..+-|+||+++|+....| .                                   
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2211                 1123568899999988775443 1                                   


Q ss_pred             cEEEEECCCCceEE-E-e---ccCCccEEEEEEcCCCCEEEEE--eCCC---CEEEEECCCCeEEeEecc-CCC---ceE
Q 011457          282 VCRVWDIRTKMQIF-A-L---AGHDNTVCSVFTRPTDPQVVTG--SHDS---TIKFWDLRYGKTMLTLTH-HKK---SVR  347 (485)
Q Consensus       282 ~i~iwd~~~~~~~~-~-~---~~~~~~v~~l~~~~~~~~l~s~--s~dg---~I~iwd~~~~~~~~~~~~-~~~---~v~  347 (485)
                      .+.|+|+.+++... . .   ......+..+.|.+++..|+..  ..+.   .+.++|..++.....+.. ...   ...
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence            23345555444321 1 1   1234567888998888844433  2222   366778877655333321 111   223


Q ss_pred             EEEEC-CCCCEEE-EEcCCC---EEEEECCCCceeeeeccCCcccE-EEEEeCCCC--eEEEEeCC----CcEEEEeCC-
Q 011457          348 AMALH-PTEDCFA-SASAEN---IKKFNLPKGEFLHNMLSQQKTII-NSMAVNEEG--VLATGGDN----GSLWFWDWK-  414 (485)
Q Consensus       348 ~l~~~-p~~~~l~-~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i-~~~~~~~~~--~l~sg~~d----g~I~iwd~~-  414 (485)
                      ...+. +++..++ ....++   |.+++...+... .+ ....-.| ..+.+++++  +++++..+    ..|+.-++. 
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~l-T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~  316 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QL-TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS  316 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ES-S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cc-ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence            45554 6655444 444444   778887777633 33 3334444 457777776  45555543    255555666 


Q ss_pred             CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      .+.. ..+..    ....|    ..+.|||+|++++-.+.
T Consensus       317 ~~~~-~~LT~----~~~~~----~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  317 GGEP-KCLTC----EDGDH----YSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             TTEE-EESST----TSSTT----EEEEE-TTSSEEEEEEE
T ss_pred             CCCe-EeccC----CCCCc----eEEEECCCCCEEEEEEc
Confidence            3322 22221    11111    68999999999886543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1.2e-05  Score=82.13  Aligned_cols=190  Identities=15%  Similarity=0.227  Sum_probs=136.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc-eEEEEEecCCCEEEEEECCCc-----EEEEECCCC------
Q 011457          224 AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG-VYCLGLHPTIDILLTGGRDSV-----CRVWDIRTK------  291 (485)
Q Consensus       224 ~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~sg~~dg~-----i~iwd~~~~------  291 (485)
                      +|++.+..++.|+.+|.|.+.+ .+-+.++.++.+... |..+-...+.++|++.+.|+.     ++|||++.-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4677888899999999998887 334556778777766 555544444468888887754     899999632      


Q ss_pred             ceE--EEecc-----CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC----CeEEeEeccCCCceEEEEECCCCCE-EE
Q 011457          292 MQI--FALAG-----HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY----GKTMLTLTHHKKSVRAMALHPTEDC-FA  359 (485)
Q Consensus       292 ~~~--~~~~~-----~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~l~~~p~~~~-l~  359 (485)
                      .++  +.+..     ...++++++++.+-..+++|-.||.|..+.-.-    +....-....+.+|+.+++..++.. +.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            223  12222     345789999999999999999999999995321    2222222334679999999988886 66


Q ss_pred             EEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCe-EEEEeCCCcEEEEeCCC
Q 011457          360 SASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGV-LATGGDNGSLWFWDWKS  415 (485)
Q Consensus       360 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~sg~~dg~I~iwd~~~  415 (485)
                      ++....|..|.+....+.......++..++|..+++... +++++. ..+.+|+...
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~  244 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG  244 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence            777778999998855545555678888999999998774 666654 4899998764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.64  E-value=4.3e-06  Score=83.72  Aligned_cols=196  Identities=9%  Similarity=0.107  Sum_probs=124.7

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE-EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-  251 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~-  251 (485)
                      |...|.--+++-.+++++.|+.-|.+++|+-..++.... ..+-.+.+..+..+++..++|.|+..|.|.++-+..... 
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            344455555667899999999999999999766654332 223445667778888988999999999999998765321 


Q ss_pred             ----EEEe-cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC----ceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457          252 ----IRSY-HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK----MQIFALAGHDNTVCSVFTRPTDPQVVTGSHD  322 (485)
Q Consensus       252 ----~~~~-~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d  322 (485)
                          +... +.|...|+|++|++++..+++|...|.|..-.+.+.    ...+.+....+.|..+.+.  ..+|++++.-
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~  189 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT  189 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence                2222 347889999999999999999999999999888772    1122333345666666654  2234333332


Q ss_pred             CCEEEEECCCCeE--EeEeccCCCceEEEEECCC----CCEEEEEcCCCEEEEECC
Q 011457          323 STIKFWDLRYGKT--MLTLTHHKKSVRAMALHPT----EDCFASASAENIKKFNLP  372 (485)
Q Consensus       323 g~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~----~~~l~~~~~~~i~i~d~~  372 (485)
                      . ..+++...+..  +..-....-.-...+|-|.    ..-++.++.-+.++|..+
T Consensus       190 r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead  244 (726)
T KOG3621|consen  190 R-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEAD  244 (726)
T ss_pred             h-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEee
Confidence            2 23444443221  1111111111233455544    556777777788888664

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.62  E-value=4e-05  Score=81.32  Aligned_cols=234  Identities=13%  Similarity=0.118  Sum_probs=154.8

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC----C--
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE----Q--  248 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~----~--  248 (485)
                      .+.|.++.|.-+.+.++.+..+|.|.+-|.++..... ...-...|.+++|+||+..++..+.++++.+-+-.    .  
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            4689999999999999999999999999887765432 22245789999999999999988887777665320    0  


Q ss_pred             -----------------CeeEEEeccc---------------------CCceEEEEEecCCCEEEEEE-----CCCcEEE
Q 011457          249 -----------------NKVIRSYHGH---------------------LSGVYCLGLHPTIDILLTGG-----RDSVCRV  285 (485)
Q Consensus       249 -----------------~~~~~~~~~h---------------------~~~v~~l~~~~~~~~l~sg~-----~dg~i~i  285 (485)
                                       |+.-..|+|.                     .+.=+.+.|--||+++++..     ....|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence                             0111122211                     11124589999999998842     2378999


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe---CCCCEEEEECCCCeE----EeEeccCCCceEEEEECCCCCEE
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS---HDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTEDCF  358 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s---~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l  358 (485)
                      ||-+ +..-..-....+.-.+++|-|.|..+++-.   .|+.|.+|.-+ |-.    ...+......|..++|+.++..|
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCce
Confidence            9977 443333333445567899999999888643   45679999743 332    22233344559999999999999


Q ss_pred             EE---EcCCC-EEEEECCCCceeeee-ccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeC
Q 011457          359 AS---ASAEN-IKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDW  413 (485)
Q Consensus       359 ~~---~~~~~-i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~  413 (485)
                      ++   ...+. |.+|...+.....+. ..-.....  +.|+|..  .|.+-..+|...++|+
T Consensus       305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            98   44444 999988765433221 11111111  7777755  4555557777777665

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.62  E-value=1.4e-07  Score=59.85  Aligned_cols=39  Identities=33%  Similarity=0.721  Sum_probs=37.0

Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd  287 (485)
                      ++++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.61  E-value=5.1e-05  Score=67.38  Aligned_cols=144  Identities=13%  Similarity=0.070  Sum_probs=106.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457          229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF  308 (485)
Q Consensus       229 ~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  308 (485)
                      ..+++.|+..+.+..-|..+|+.+..-. ....+.+-+.- -|++++.|+..|.+++.+.++|..++.+......-....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            4678899999999999999998876643 23344433333 467899999999999999999999888875443334455


Q ss_pred             EcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEcCCCEEEEECCCC
Q 011457          309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASASAENIKKFNLPKG  374 (485)
Q Consensus       309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~i~i~d~~~~  374 (485)
                      ..+++..+..|+.|++.+..|.++..++...+-......+-++.| ++.++++...+.+.-...+..
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            677899999999999999999999999988776555555556666 555555555554444444443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.53  E-value=2e-05  Score=77.51  Aligned_cols=276  Identities=14%  Similarity=0.149  Sum_probs=144.3

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ--------  248 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~--------  248 (485)
                      .|+.+.|.++..-|++|...|.|.||.....+...  ......-....+.+-      ...++.-.+-|+..        
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            58899999998899999999999999875543221  000011111111110      00111222333321        


Q ss_pred             C-eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec--c------CCccEEEEEEcC-----CC-
Q 011457          249 N-KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA--G------HDNTVCSVFTRP-----TD-  313 (485)
Q Consensus       249 ~-~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~l~~~~-----~~-  313 (485)
                      + ....-++...++|++++.+. -.+++.|..+|.+.|.|+|....++.-.  .      ....++++.|.-     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            1 23334455689999999974 4599999999999999999888777632  1      234677787752     22 


Q ss_pred             --CEEEEEeCCCCEEEEECCC---Ce----EEeEeccCCCceEEEE-ECCC---------------------CCEEEEEc
Q 011457          314 --PQVVTGSHDSTIKFWDLRY---GK----TMLTLTHHKKSVRAMA-LHPT---------------------EDCFASAS  362 (485)
Q Consensus       314 --~~l~s~s~dg~I~iwd~~~---~~----~~~~~~~~~~~v~~l~-~~p~---------------------~~~l~~~~  362 (485)
                        ..+++|+..|.+.+|.+.-   +.    .......+..+|..+. ++.+                     ..++++++
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              4789999999999998751   11    1112223455555554 3211                     13677888


Q ss_pred             CCCEEEEECCCCceeeeeccCCcccEEEEEeC-----CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCcc
Q 011457          363 AENIKKFNLPKGEFLHNMLSQQKTIINSMAVN-----EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAG  436 (485)
Q Consensus       363 ~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~-----~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  436 (485)
                      ...++++...+.+...+.. ........+.+-     ..+ .|++-..+|.|++|.+..-+.+...+....    .....
T Consensus       234 e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~----~d~~~  308 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP----LDSRR  308 (395)
T ss_dssp             SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-------HHH
T ss_pred             ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc----ccccc
Confidence            8889999999998877765 222233333332     234 888899999999999998776665543211    12223


Q ss_pred             EEEEEEccCCCEEEEEECCC--cEEEecCCCC
Q 011457          437 IYALSYDVTGSRLVTCEADK--TIKMWREDET  466 (485)
Q Consensus       437 V~~l~~s~~g~~L~s~~~Dg--~I~iW~~~~~  466 (485)
                      +...+++++|..++-.+...  .+.+|.....
T Consensus       309 ~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~  340 (395)
T PF08596_consen  309 LSSSSISRNGDIFYWTGPSEIQLFSVWGEGRT  340 (395)
T ss_dssp             HTT-EE-TTS-EEEE-SSSEEEEEEEES----
T ss_pred             ccccEECCCCCEEEEeCcccEEEEEEEccCCc
Confidence            44567789998776665432  3445554443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.53  E-value=8.4e-05  Score=79.02  Aligned_cols=196  Identities=13%  Similarity=0.135  Sum_probs=131.2

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC----C---
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR----T---  290 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~----~---  290 (485)
                      ..|.++.|..+...++.+..+|.|.+-|.++..... ...-...|.+++|+||+..++..+.++++.+-+-.    .   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            689999999999999999999999999988764322 22356789999999999999999988888765431    0   


Q ss_pred             ----------------CceEEEeccC---------------------CccEEEEEEcCCCCEEEEEe----CC-CCEEEE
Q 011457          291 ----------------KMQIFALAGH---------------------DNTVCSVFTRPTDPQVVTGS----HD-STIKFW  328 (485)
Q Consensus       291 ----------------~~~~~~~~~~---------------------~~~v~~l~~~~~~~~l~s~s----~d-g~I~iw  328 (485)
                                      |+....+.|.                     .+.-++|.|--||.++++..    .+ ..|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                            1111122211                     11224689999999998732    23 689999


Q ss_pred             ECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECC---CCceeeeeccCCcccEEEEEeCCCC-eEE
Q 011457          329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLP---KGEFLHNMLSQQKTIINSMAVNEEG-VLA  400 (485)
Q Consensus       329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~-~l~  400 (485)
                      |-. |..-..-....+.-.+++|-|.|.++++-...    .|.+|.-+   .|++...+ ......+..++|+.++ .|+
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCCCcee
Confidence            976 44333333333445689999999999876433    37777632   22222222 1122338999999999 665


Q ss_pred             E---EeCCCcEEEEeCCCC
Q 011457          401 T---GGDNGSLWFWDWKSG  416 (485)
Q Consensus       401 s---g~~dg~I~iwd~~~~  416 (485)
                      +   ......|++|-+.+.
T Consensus       306 v~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecccccceEEEEEecCe
Confidence            5   344455999987654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.50  E-value=5.5e-05  Score=76.70  Aligned_cols=185  Identities=15%  Similarity=0.099  Sum_probs=111.9

Q ss_pred             CCCEEEEEeC-CCcEEEEECCCCeeEEEec---------------ccCCceEE-----EEEecCCCEEE-EEECCCcEEE
Q 011457          228 KHTYMFSAGD-DKQVKCWDLEQNKVIRSYH---------------GHLSGVYC-----LGLHPTIDILL-TGGRDSVCRV  285 (485)
Q Consensus       228 ~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~---------------~h~~~v~~-----l~~~~~~~~l~-sg~~dg~i~i  285 (485)
                      ||+||+.-.. +..|-..+++..++-+.+.               .+...|.|     +=+.|||+.+. +.-..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            6778887653 5566666666555433331               11222221     22344555442 2333567778


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe----------------------------------------CCCCE
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS----------------------------------------HDSTI  325 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s----------------------------------------~dg~I  325 (485)
                      .|..+.+...++.- ......+.+++++.++++.+                                        .++.|
T Consensus       220 ID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V  298 (635)
T PRK02888        220 VDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV  298 (635)
T ss_pred             EECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence            88887776666542 22345566777777776664                                        12447


Q ss_pred             EEEECCC----CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCce------------eeeeccCCccc
Q 011457          326 KFWDLRY----GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEF------------LHNMLSQQKTI  387 (485)
Q Consensus       326 ~iwd~~~----~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~------------~~~~~~~~~~~  387 (485)
                      .+.|.++    +..+..+-.-......+.++|||+++++++.-.  +.++|+.+.+.            ..+...  ...
T Consensus       299 ~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlG  376 (635)
T PRK02888        299 PVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLG  376 (635)
T ss_pred             EEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCC
Confidence            7777776    222222222345577899999999998887643  99999987653            222211  222


Q ss_pred             EEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          388 INSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       388 i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      ....+|.++| .+.+-.-|..|..||+..
T Consensus       377 PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            3456678887 667777899999999876

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.48  E-value=0.00024  Score=68.18  Aligned_cols=279  Identities=15%  Similarity=0.169  Sum_probs=140.7

Q ss_pred             EEccCCCEEEEEeC-C--CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc
Q 011457          182 AFDHSNTWFCTGSA-D--RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH  258 (485)
Q Consensus       182 ~~sp~~~~l~tgs~-d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h  258 (485)
                      +|.++|+.|+.++. |  ..+.+.|+.+++..+--.+.........++++.+.++-...+..|+-.|+++.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            46778876665554 4  57888899988876544432222334667788888776666678999999998876666655


Q ss_pred             CCceEEEEEe--cCCCEEEEEEC----------------------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC
Q 011457          259 LSGVYCLGLH--PTIDILLTGGR----------------------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP  314 (485)
Q Consensus       259 ~~~v~~l~~~--~~~~~l~sg~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  314 (485)
                      ...+-...|.  .++..++-.-.                      .+.|.-.|+.+++....+. ....+..+.++|..+
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence            6666555664  34544432211                      1356666777776544444 566788999999888


Q ss_pred             EEEEEeCCC-----CEEEEECCC-CeEEeEeccC--CCceEEEEECCCCCEEEEEc--CCC----EEEEECCCCceeeee
Q 011457          315 QVVTGSHDS-----TIKFWDLRY-GKTMLTLTHH--KKSVRAMALHPTEDCFASAS--AEN----IKKFNLPKGEFLHNM  380 (485)
Q Consensus       315 ~l~s~s~dg-----~I~iwd~~~-~~~~~~~~~~--~~~v~~l~~~p~~~~l~~~~--~~~----i~i~d~~~~~~~~~~  380 (485)
                      .+++-+..|     .-|||-+++ +.....+..+  ...+..=-|.|+|..+.--+  .++    |.-++..+++.....
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~  280 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM  280 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence            887766544     136675543 3333333222  23455557899998665432  222    777788877654321


Q ss_pred             ccCCcccEEEEEeCCCCeEEEEeCCC-----------------cEEEEeCCCCcccccceeeeccCCCCCCc--cEEEEE
Q 011457          381 LSQQKTIINSMAVNEEGVLATGGDNG-----------------SLWFWDWKSGHNFQQAQTIVQPGSLDSEA--GIYALS  441 (485)
Q Consensus       381 ~~~~~~~i~~~~~~~~~~l~sg~~dg-----------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--~V~~l~  441 (485)
                         ......-+..+++|.|++|...+                 .|++++++.+........-.......+..  .=-...
T Consensus       281 ---~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~  357 (386)
T PF14583_consen  281 ---EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS  357 (386)
T ss_dssp             ---EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred             ---eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence               11235567778888666553221                 46678887665432221100000000000  113578


Q ss_pred             EccCCCEEEE-EECCCcEEEecCC
Q 011457          442 YDVTGSRLVT-CEADKTIKMWRED  464 (485)
Q Consensus       442 ~s~~g~~L~s-~~~Dg~I~iW~~~  464 (485)
                      |+|||++++- +...|...||-++
T Consensus       358 FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  358 FSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             E-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             cCCCCCEEEEECCCCCCccEEEEe
Confidence            9999998764 5567877777543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.46  E-value=7.4e-05  Score=74.51  Aligned_cols=222  Identities=13%  Similarity=0.104  Sum_probs=120.2

Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457          216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF  295 (485)
Q Consensus       216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  295 (485)
                      .......+.++|+|++++++ .||.-.|+.....+....     +.-..++|.+. +.+++-...+.|.|+.--..+...
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence            44557899999999998885 567888887444333221     33356788885 457777778899997432333322


Q ss_pred             EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCC-
Q 011457          296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKG-  374 (485)
Q Consensus       296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~-  374 (485)
                      .+.. ...+..+..   |..|...+.+ .|.+||+.+++.+..+...  +|..+.|++++.+++..+.+.+.+++.... 
T Consensus       104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~  176 (443)
T PF04053_consen  104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEA  176 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred             EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence            3331 223455544   7777776654 8999999999999998754  489999999999999999999888775443 


Q ss_pred             --------c--eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457          375 --------E--FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       375 --------~--~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                              -  .... ...-...|.+..|..+ .++-.+.+ .|+.  +-.|+. ..+..        -...++=+.+.+
T Consensus       177 ~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge~-~~i~~--------ld~~~yllgy~~  242 (443)
T PF04053_consen  177 VAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNGET-GIIAH--------LDKPLYLLGYLP  242 (443)
T ss_dssp             HHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETTEE-EEEEE---------SS--EEEEEET
T ss_pred             cccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcCCc-ceEEE--------cCCceEEEEEEc
Confidence                    0  1111 1111445666777666 33333333 5555  233322 11111        123466677777


Q ss_pred             CCCEEEEEECCCcEEEecCCC
Q 011457          445 TGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       445 ~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      ..+.+.....|+.|..+.++.
T Consensus       243 ~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  243 KENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             TTTEEEEE-TT--EEEEE--H
T ss_pred             cCCEEEEEECCCCEEEEEECH
Confidence            778899999999998887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=6.1e-06  Score=83.93  Aligned_cols=265  Identities=13%  Similarity=0.121  Sum_probs=150.5

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH-  256 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-  256 (485)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.|.+|....-..++... 
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            4569999999899999889999999988777766667799999999999999999999999999999886433332221 


Q ss_pred             -ccC--C--ceEEEEEecCCC------EEEEEECCCcEE-EEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          257 -GHL--S--GVYCLGLHPTID------ILLTGGRDSVCR-VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       257 -~h~--~--~v~~l~~~~~~~------~l~sg~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                       .|.  .  ...|..+++++.      ..++.+.+.-+- .++.+......... |.       -.|+|..++.++.+|+
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~Gt  213 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGT  213 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCce
Confidence             121  2  234555566532      233334333332 33333211111111 11       1467888888999999


Q ss_pred             EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EE-EEECCCC---------------ce-----------
Q 011457          325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IK-KFNLPKG---------------EF-----------  376 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~-i~d~~~~---------------~~-----------  376 (485)
                      |+-.|-. |++.........  ..+-|.+....+++.-.+- +. ++-..+|               ..           
T Consensus       214 Vyyvdq~-g~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG  290 (1416)
T KOG3617|consen  214 VYYVDQN-GRQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG  290 (1416)
T ss_pred             EEEEcCC-CcEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence            9888843 443333221110  1111222111111111110 00 0111111               00           


Q ss_pred             ----eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccc--cceeeeccCCCCCCccEEEEEEccCCCEE
Q 011457          377 ----LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQ--QAQTIVQPGSLDSEAGIYALSYDVTGSRL  449 (485)
Q Consensus       377 ----~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~~~~~~~~~~~V~~l~~s~~g~~L  449 (485)
                          -.++-...+..++|++++..+ .|..|...|.+.+|--.......  ....+...+.....+.|+.+.|.|-.+.+
T Consensus       291 vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~  370 (1416)
T KOG3617|consen  291 VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA  370 (1416)
T ss_pred             cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence                001111234568999999888 89999999999999532211111  01111122223445679999998866555


Q ss_pred             EEEE
Q 011457          450 VTCE  453 (485)
Q Consensus       450 ~s~~  453 (485)
                      +.-+
T Consensus       371 avn~  374 (1416)
T KOG3617|consen  371 AVNT  374 (1416)
T ss_pred             hhhh
Confidence            5443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.42  E-value=0.00027  Score=64.75  Aligned_cols=199  Identities=12%  Similarity=0.244  Sum_probs=118.9

Q ss_pred             EEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          169 RVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      +.+.+-...+..|+|+|+.+ ++++....+.|...+. +|+.+..+.-. .+....|++..++.++++--.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            45667777799999999755 6666667788888886 57777766433 366889999888887777767899999988


Q ss_pred             CCCe------eEEEec-----ccCCceEEEEEecCCCEEEEEECCCcEEEEECCC---CceEEE--e------ccCCccE
Q 011457          247 EQNK------VIRSYH-----GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---KMQIFA--L------AGHDNTV  304 (485)
Q Consensus       247 ~~~~------~~~~~~-----~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~--~------~~~~~~v  304 (485)
                      ....      ....+.     .++..+-.++|.+.++.|+.+-...-..+|.++.   ...+..  .      ......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            4321      112221     3556789999999988888887777777777654   222211  1      1133467


Q ss_pred             EEEEEcCCC-CEEEEEeCCCCEEEEECCCCeEEeEeccCC---------CceEEEEECCCCCEEEEEcCCCEEEE
Q 011457          305 CSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---------KSVRAMALHPTEDCFASASAENIKKF  369 (485)
Q Consensus       305 ~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~~~~~~~i~i~  369 (485)
                      .++.++|.. .+++....+..|..+| ..|+.+..+....         ..--.|+|.++|.++++.-.+-.++|
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            899999865 4556666777888999 6677766554332         35778999999988877754435544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.39  E-value=0.00038  Score=65.73  Aligned_cols=227  Identities=14%  Similarity=0.148  Sum_probs=133.4

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---------
Q 011457          185 HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---------  255 (485)
Q Consensus       185 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---------  255 (485)
                      ..++.|+.|+.+| +.+++.........+. +...|..+...++-+.|++-+ |+.+.++++..-.....-         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899999988 9999983333222222 233499999999888777764 599999998765443311         


Q ss_pred             -----cccCCceEEEE--EecCCCEEEEEECCCcEEEEECCCC-----ceEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 011457          256 -----HGHLSGVYCLG--LHPTIDILLTGGRDSVCRVWDIRTK-----MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS  323 (485)
Q Consensus       256 -----~~h~~~v~~l~--~~~~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg  323 (485)
                           ......+..++  -...+...+.......|.+|.....     +....+. -...+.++.|.  ++.++.|..+ 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence                 11223444444  1123334444445558888887653     3444444 45788899988  5678777754 


Q ss_pred             CEEEEECCCCeEEeEeccCC------------CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEE
Q 011457          324 TIKFWDLRYGKTMLTLTHHK------------KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       324 ~I~iwd~~~~~~~~~~~~~~------------~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      ...+.|+.++.....+....            .++..+... ++.+|++.  +++-+|--..|+..+...-.-......+
T Consensus       158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~  234 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSV  234 (275)
T ss_pred             ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEE
Confidence            48888998766544332111            233333433 44555543  3344443345544431111222344555


Q ss_pred             EeCCCCeEEEEeCCCcEEEEeCCCCcccccce
Q 011457          392 AVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       392 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      .+... +|++.+. +.|.||++.+++.++.+.
T Consensus       235 ~~~~p-yli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  235 AYSSP-YLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             EEECC-EEEEECC-CEEEEEECcCCcEEEEEE
Confidence            55433 6666555 459999999998766554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.39  E-value=3.2e-07  Score=90.47  Aligned_cols=248  Identities=14%  Similarity=0.134  Sum_probs=154.9

Q ss_pred             cCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeE--EEecccCCceEEEEEecC-CCEEEEEEC----CCcEEEEEC
Q 011457          218 EQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQNKVI--RSYHGHLSGVYCLGLHPT-IDILLTGGR----DSVCRVWDI  288 (485)
Q Consensus       218 ~~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~-~~~l~sg~~----dg~i~iwd~  288 (485)
                      ..+.|+++.-+  ...+++|..+|.|-+-.+....-.  ....++....++++|++- .+.|+.|-.    |..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            44566665543  357888999999999988654322  233568889999999984 556776633    668999999


Q ss_pred             CCCc--e--EEEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEc
Q 011457          289 RTKM--Q--IFALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASAS  362 (485)
Q Consensus       289 ~~~~--~--~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~  362 (485)
                      .++-  +  -..+.+ ......+++|..+.+.+++|.....+.++|++.... .........+..+...| ...++++..
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccc
Confidence            8761  1  122222 345566899998899999999999999999984221 11112234577788889 788999988


Q ss_pred             CCCEEEEEC-CCCceeeeeccCC----cccEEEEEeCCCC--eEEEEeC-CCcEEEEeCCCCcccc-----cceeeeccC
Q 011457          363 AENIKKFNL-PKGEFLHNMLSQQ----KTIINSMAVNEEG--VLATGGD-NGSLWFWDWKSGHNFQ-----QAQTIVQPG  429 (485)
Q Consensus       363 ~~~i~i~d~-~~~~~~~~~~~~~----~~~i~~~~~~~~~--~l~sg~~-dg~I~iwd~~~~~~~~-----~~~~~~~~~  429 (485)
                      ++.|.+||. .+-+.........    ...+..++|.|..  .+++... .++|+++|+..-....     .......+-
T Consensus       216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~  295 (783)
T KOG1008|consen  216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKY  295 (783)
T ss_pred             cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccc
Confidence            777999993 3333222211111    1348889999865  6666555 4789999985321100     000000000


Q ss_pred             CCCC---CccEEEEEEccCC--CEEEEEECCCcEEEecCCCC
Q 011457          430 SLDS---EAGIYALSYDVTG--SRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       430 ~~~~---~~~V~~l~~s~~g--~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      ...+   -..|.+..|++..  ...+++-..-++.-+++.+.
T Consensus       296 ~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e~  337 (783)
T KOG1008|consen  296 PVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHEE  337 (783)
T ss_pred             cccccccccceeecCcCcCCccceeEEeeccCChhhccchhh
Confidence            1112   2467888887654  34455555556666665543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.37  E-value=0.001  Score=66.41  Aligned_cols=205  Identities=13%  Similarity=0.105  Sum_probs=111.9

Q ss_pred             eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------cccCCceEEEEEecC
Q 011457          198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-------HGHLSGVYCLGLHPT  270 (485)
Q Consensus       198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~  270 (485)
                      .|.||+. .|+++.++.-..+.|.++.|+.+.. |++...||.+++||+. |+....+       .-....+....+..+
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence            5999995 5777777655458999999998655 5566699999999986 3331111       111122222233335


Q ss_pred             CCEEEEEECCCcEEEEECCCCc-eEEEec---c-------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457          271 IDILLTGGRDSVCRVWDIRTKM-QIFALA---G-------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL  339 (485)
Q Consensus       271 ~~~l~sg~~dg~i~iwd~~~~~-~~~~~~---~-------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  339 (485)
                      |-.++  ..++.+.+.+-.... ....+.   .       +........++.+....+....++.+.+.+-...+.   +
T Consensus       139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence            53333  344555444322211 111111   0       000000022334444445555555566444332211   1


Q ss_pred             ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457          340 THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD  412 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd  412 (485)
                       ...+++..|++||+++++|.-..++ +.+.+..-.+.+.++..........+.|..+..++..- +..|.+..
T Consensus       214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg  285 (410)
T PF04841_consen  214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVG  285 (410)
T ss_pred             -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEEC
Confidence             1246899999999999999888766 77777655555655544445566677777765333332 33455543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.29  E-value=0.00048  Score=68.82  Aligned_cols=226  Identities=13%  Similarity=0.083  Sum_probs=117.4

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      .+.+....-....+.++|+|++++++ .||.-.|+.....+....     +.-...+|.+++. +|+-..+++|.|+.--
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNF   97 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence            44455556668899999999998885 568888888544444332     2334678888555 6666668899997433


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                      +++..+.+.. ...+..|-.   |.+|...+.+ .|.+||+.+++.+..+...  .|..+.|++++.+++..+.+ .+.+
T Consensus        98 ~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~i  169 (443)
T PF04053_consen   98 KNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYI  169 (443)
T ss_dssp             EE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEE
T ss_pred             ccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEE
Confidence            3333334432 122333332   7777766655 8999999999999998733  48999999999999988755 6777


Q ss_pred             EECCCC-----------eEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457          328 WDLRYG-----------KTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE  396 (485)
Q Consensus       328 wd~~~~-----------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  396 (485)
                      ++....           .....+..-...|.+..|..+  .|+-.+...++.  +..|+...-  .+-+.++.-+...+.
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~~~i--~~ld~~~yllgy~~~  243 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNGETGII--AHLDKPLYLLGYLPK  243 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETTEEEEE--EE-SS--EEEEEETT
T ss_pred             EEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcCCcceE--EEcCCceEEEEEEcc
Confidence            765432           022222222567888899766  555444444444  333332111  111233444444443


Q ss_pred             C-eEEEEeCCCcEEEEeCC
Q 011457          397 G-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       397 ~-~l~sg~~dg~I~iwd~~  414 (485)
                      . .+.....|+.|..+.+.
T Consensus       244 ~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  244 ENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             TTEEEEE-TT--EEEEE--
T ss_pred             CCEEEEEECCCCEEEEEEC
Confidence            2 66666777777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.28  E-value=0.0013  Score=62.13  Aligned_cols=240  Identities=13%  Similarity=0.115  Sum_probs=147.7

Q ss_pred             EEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEcccc-------cCEEEEEEcCCCCEEEEEe--CCC
Q 011457          179 RSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGHI-------EQVRGLAVSSKHTYMFSAG--DDK  239 (485)
Q Consensus       179 ~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~-------~~V~~l~~s~~~~~l~s~~--~dg  239 (485)
                      -.+..+|+++.+++++          ..-.|.+||..+......+.-..       .....++++.+++++++..  --.
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            3466789999888754          23479999999998776543221       1223467888999888764  346


Q ss_pred             cEEEEECCCCeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECC-CCceEEEec----cCCcc-EEEEEEcCC
Q 011457          240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIR-TKMQIFALA----GHDNT-VCSVFTRPT  312 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~-~~~~~~~~~----~~~~~-v~~l~~~~~  312 (485)
                      .|.|-|+..++.+..+. -.+ +..+  .|. .+-+.+-|.||.+.-..+. .|+......    ....+ +..-.+...
T Consensus       119 SVtVVDl~~~kvv~ei~-~PG-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEID-TPG-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEEETTTTEEEEEEE-GTS-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             eEEEEECCCCceeeeec-CCC-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            79999999999998875 222 2222  232 3468899999999999987 454432211    11122 223334444


Q ss_pred             CCEEEEEeCCCCEEEEECCCCeEEe--EeccC----------CCceEEEEECCCCCEEEEE-cCC----------CEEEE
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGKTML--TLTHH----------KKSVRAMALHPTEDCFASA-SAE----------NIKKF  369 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~----------~~~v~~l~~~p~~~~l~~~-~~~----------~i~i~  369 (485)
                      +..++--+.+|.|+-.|+.......  .+...          .+.-.-+++++....|... ..+          .|.++
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            5556657889999998887654321  22110          1233457777655444332 111          18888


Q ss_pred             ECCCCceeeeeccCCcccEEEEEeCCCC--eEEEE-eCCCcEEEEeCCCCccccccee
Q 011457          370 NLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATG-GDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg-~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      |+.+++.+..+...  ..+.++.++.+.  +|++. ..++.|.+||..+|+.+.....
T Consensus       275 D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  275 DLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            99999999887433  357788888887  66554 4579999999999988776653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.25  E-value=0.00087  Score=63.26  Aligned_cols=228  Identities=12%  Similarity=0.149  Sum_probs=136.8

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---------
Q 011457          227 SKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---------  297 (485)
Q Consensus       227 ~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---------  297 (485)
                      ..++.|+.|+++| +.++++.......... +...|..+...++-+.|++-+ |+.+.++++..-......         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899999998 9999983333323322 233499999999877766664 599999999765443311         


Q ss_pred             -----ccCCccEEEEE--EcCCCCEEEEEeCCCCEEEEECCCC-----eEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          298 -----AGHDNTVCSVF--TRPTDPQVVTGSHDSTIKFWDLRYG-----KTMLTLTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       298 -----~~~~~~v~~l~--~~~~~~~l~s~s~dg~I~iwd~~~~-----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                           ......+...+  -...+...++......|.+|.....     +....+.. ...+.+++|.  +..++.+..++
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~~  158 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSKG  158 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCCc
Confidence                 11223344444  1223333444444558888877653     34455543 3678889988  77888888888


Q ss_pred             EEEEECCCCceeeeeccCC-----------cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457          366 IKKFNLPKGEFLHNMLSQQ-----------KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE  434 (485)
Q Consensus       366 i~i~d~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  434 (485)
                      ..+.|+.++....-+....           ...+..+..+.+.+|++-  |..-.+.|. .|+... ...      +.-.
T Consensus       159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r-~~~------i~W~  228 (275)
T PF00780_consen  159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSR-KST------IQWS  228 (275)
T ss_pred             eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCc-ccE------EEcC
Confidence            9999999776543321111           123445555555455543  334444443 444333 111      1122


Q ss_pred             ccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          435 AGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       435 ~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                      ....++++.  ..+|+..+. +.|.||++.++...++.+
T Consensus       229 ~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  229 SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            345566664  568887766 459999999997655544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.24  E-value=0.0043  Score=62.36  Aligned_cols=238  Identities=12%  Similarity=0.113  Sum_probs=132.6

Q ss_pred             ceEEEEEccCCCEEEEE-eCCC----eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC-----------c
Q 011457          177 WVRSVAFDHSNTWFCTG-SADR----TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK-----------Q  240 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tg-s~dg----~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-----------~  240 (485)
                      .+....++|+++++|.+ +..|    .|+++|+.+++.+...-.... ...+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999988865 3333    699999999977653211111 22399999988776664333           4


Q ss_pred             EEEEECCCCee--EEEecccCC--ceEEEEEecCCCEEEEEECC----CcEEEEECCCC----ceEEEeccCCccE-EEE
Q 011457          241 VKCWDLEQNKV--IRSYHGHLS--GVYCLGLHPTIDILLTGGRD----SVCRVWDIRTK----MQIFALAGHDNTV-CSV  307 (485)
Q Consensus       241 V~iwd~~~~~~--~~~~~~h~~--~v~~l~~~~~~~~l~sg~~d----g~i~iwd~~~~----~~~~~~~~~~~~v-~~l  307 (485)
                      |+.|.+.+...  ...+.....  ....+..++++++|+.....    ..+.+.|+..+    .....+......+ ..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            88888876632  233332222  25678899999987754432    34788888774    2333333333334 334


Q ss_pred             EEcCCCCEEEEEe---CCCCEEEEECCCCeE---EeEeccCCC--ceEEEEECCCCCEEE-EEcCCC---EEEEECCCCc
Q 011457          308 FTRPTDPQVVTGS---HDSTIKFWDLRYGKT---MLTLTHHKK--SVRAMALHPTEDCFA-SASAEN---IKKFNLPKGE  375 (485)
Q Consensus       308 ~~~~~~~~l~s~s---~dg~I~iwd~~~~~~---~~~~~~~~~--~v~~l~~~p~~~~l~-~~~~~~---i~i~d~~~~~  375 (485)
                      ... .+.+++...   .++.|...++.....   ...+..+..  .+..+..  .+.+|+ ....++   |.++++..+.
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence            333 343444332   235677778776652   224444444  3555544  344444 444443   8999998444


Q ss_pred             eeeeeccCCcccEEEEEeCCCC--eEEEEeC---CCcEEEEeCCCCcc
Q 011457          376 FLHNMLSQQKTIINSMAVNEEG--VLATGGD---NGSLWFWDWKSGHN  418 (485)
Q Consensus       376 ~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~---dg~I~iwd~~~~~~  418 (485)
                      ....+.....+.+..+...+++  +.+..++   -+.++.||+.+++.
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            4444444445556666655555  3333332   26788889888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.24  E-value=0.00049  Score=69.99  Aligned_cols=182  Identities=10%  Similarity=0.030  Sum_probs=115.8

Q ss_pred             EccCCCEEEE-EeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCeeEEEecc
Q 011457          183 FDHSNTWFCT-GSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK----QVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       183 ~sp~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg----~V~iwd~~~~~~~~~~~~  257 (485)
                      ++|||+.+.. .-..+.+.+.|.++.+...++.-- +....++++++|.++++.+.+.    ++..-+......+..+.-
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            4567765533 233467888888887777666533 2446789999999998886422    222222222111111110


Q ss_pred             cCCceEEEEEecCCCEEEEEECCCcEEEEECCC----C-ceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECC
Q 011457          258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT----K-MQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLR  331 (485)
Q Consensus       258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~----~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~  331 (485)
                      .  .+  -.+.++|++...  .++.|.+.|.++    + +.+..+. -......+.++|||+++++++ .+.++.++|+.
T Consensus       279 ~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        279 A--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             H--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence            0  00  023446776665  367899999998    3 3344443 566778899999999887655 48899999998


Q ss_pred             CCeE------------EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCC
Q 011457          332 YGKT------------MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK  373 (485)
Q Consensus       332 ~~~~------------~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~  373 (485)
                      +.+.            +.+... ...-...+|.++|..+.+..-+. +..|++.+
T Consensus       352 k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        352 KLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            7553            222222 23345678899998888887776 99999876

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.24  E-value=0.0025  Score=65.64  Aligned_cols=189  Identities=15%  Similarity=0.146  Sum_probs=118.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEE---E-------EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVR---G-------LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~---~-------l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      +..++.++.++.|.-.|..+|+.+..+.... ..+.   +       +++  .+..++.++.|+.|...|.++|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4567777778899999999999888765321 1111   1       122  2345778888999999999999998876


Q ss_pred             cccCCc-eEEEEEec--CCCEEEEEEC------CCcEEEEECCCCceEEEeccCCc------------------------
Q 011457          256 HGHLSG-VYCLGLHP--TIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDN------------------------  302 (485)
Q Consensus       256 ~~h~~~-v~~l~~~~--~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~------------------------  302 (485)
                      ...... -..+.-.|  .+..++++..      +|.|..+|.++++.+..+..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            421100 01111112  1234555543      68999999999998877542111                        


Q ss_pred             -------cE-EEEEEcCCCCEEEEEeCC-----C-----------CEEEEECCCCeEEeEeccCCCc---------eEEE
Q 011457          303 -------TV-CSVFTRPTDPQVVTGSHD-----S-----------TIKFWDLRYGKTMLTLTHHKKS---------VRAM  349 (485)
Q Consensus       303 -------~v-~~l~~~~~~~~l~s~s~d-----g-----------~I~iwd~~~~~~~~~~~~~~~~---------v~~l  349 (485)
                             .+ ..+.+.+...+++.+..+     +           .|.-.|+++|+....+......         ..-+
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                   11 134666666677766522     2           5777899999988776542221         1222


Q ss_pred             EECCCCC---EEEEEcCCC-EEEEECCCCcee
Q 011457          350 ALHPTED---CFASASAEN-IKKFNLPKGEFL  377 (485)
Q Consensus       350 ~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~  377 (485)
                      .+..+|.   .++.+..++ ++++|-.+|+.+
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            3334565   666777776 999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.22  E-value=0.0043  Score=58.65  Aligned_cols=260  Identities=13%  Similarity=0.109  Sum_probs=155.3

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEecccCC------
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQNKVIRSYHGHLS------  260 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~~~~~~~~~h~~------  260 (485)
                      +.+.|+|..+++.+..+..  +..-.+..+|+++.+++++          ..-.|.+||..+......+.-...      
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4799999999998887764  3334467899999888753          245799999999988776532211      


Q ss_pred             -ceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CCeEE
Q 011457          261 -GVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YGKTM  336 (485)
Q Consensus       261 -~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~~  336 (485)
                       ....++++.|++++++...  -..|.|.|+..++.+..+.-  ..+..+.-.. ..-|.+-|.||.+.-..+. .|+..
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence             1234677888887776543  45788999998888877652  2223332222 2457788899999999887 45554


Q ss_pred             eEe----ccCCCce-EEEEECCC-CCEEEEEcCCCEEEEECCCCcee--eeeccCC---------cccEEEEEeCCCC-e
Q 011457          337 LTL----THHKKSV-RAMALHPT-EDCFASASAENIKKFNLPKGEFL--HNMLSQQ---------KTIINSMAVNEEG-V  398 (485)
Q Consensus       337 ~~~----~~~~~~v-~~l~~~p~-~~~l~~~~~~~i~i~d~~~~~~~--~~~~~~~---------~~~i~~~~~~~~~-~  398 (485)
                      ...    .....++ ..-.+... +.++...-.+.++-.|+......  ..+....         .+....+++++.. .
T Consensus       172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence            321    1111221 12223333 33444454555777777654421  1111000         0123345665533 3


Q ss_pred             EEEE---eCCC-------cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEE-CCCcEEEecCCCC
Q 011457          399 LATG---GDNG-------SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCE-ADKTIKMWREDET  466 (485)
Q Consensus       399 l~sg---~~dg-------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~-~Dg~I~iW~~~~~  466 (485)
                      |++-   +.+|       .|.++|+.+++.+..+..         +..+.++..+.+.+ +|++.+ .++.|.+||..++
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            3332   1222       488899999988887763         33477899998776 665554 5799999999988


Q ss_pred             CCCC
Q 011457          467 ATPE  470 (485)
Q Consensus       467 ~~~~  470 (485)
                      +...
T Consensus       323 k~~~  326 (342)
T PF06433_consen  323 KLVR  326 (342)
T ss_dssp             -EEE
T ss_pred             cEEe
Confidence            7544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.15  E-value=0.0037  Score=64.46  Aligned_cols=236  Identities=12%  Similarity=0.116  Sum_probs=143.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEccc--c--cCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeeEEEec
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGH--I--EQVRGLAVSSKHTYMFSAG------DDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~--~~V~~l~~s~~~~~l~s~~------~dg~V~iwd~~~~~~~~~~~  256 (485)
                      +..++.++.|+.|.-.|..+|+.+......  .  ..+.+--.--++ .++++.      .+|.|..+|.++|+.+..+.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            346777888999999999999998765421  1  111111001134 455543      26899999999999887764


Q ss_pred             ccCC-------------------------------ce-EEEEEecCCCEEEEEECC-----C-----------cEEEEEC
Q 011457          257 GHLS-------------------------------GV-YCLGLHPTIDILLTGGRD-----S-----------VCRVWDI  288 (485)
Q Consensus       257 ~h~~-------------------------------~v-~~l~~~~~~~~l~sg~~d-----g-----------~i~iwd~  288 (485)
                      .-..                               .+ ..+++.+..++++.+..+     +           .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            2111                               11 134666666666666522     2           6788899


Q ss_pred             CCCceEEEeccCCccE---------EEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeE--------e----ccCC-
Q 011457          289 RTKMQIFALAGHDNTV---------CSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLT--------L----THHK-  343 (485)
Q Consensus       289 ~~~~~~~~~~~~~~~v---------~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~--------~----~~~~-  343 (485)
                      ++++....++.....+         .-+.+..+++   .++.+..+|.+.+.|.++|+.+..        .    .... 
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g  358 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG  358 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence            9999988776422211         1122224555   678999999999999999988621        1    0000 


Q ss_pred             Cce----------------------------EEEEECCCCCEEEEEcCC-------------------------------
Q 011457          344 KSV----------------------------RAMALHPTEDCFASASAE-------------------------------  364 (485)
Q Consensus       344 ~~v----------------------------~~l~~~p~~~~l~~~~~~-------------------------------  364 (485)
                      .++                            ..++++|+..++.....+                               
T Consensus       359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~  438 (527)
T TIGR03075       359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD  438 (527)
T ss_pred             CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence            000                            124555554444332211                               


Q ss_pred             ---CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          365 ---NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       365 ---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                         .+.-+|+.+++........... .........++++.++.+|.++.+|.++|+.+...+.
T Consensus       439 ~~g~l~AiD~~tGk~~W~~~~~~p~-~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       439 HMGSLIAWDPITGKIVWEHKEDFPL-WGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             CceeEEEEeCCCCceeeEecCCCCC-CCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence               2777888888877765332211 1122222444777788899999999999998876643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.14  E-value=0.00012  Score=72.68  Aligned_cols=113  Identities=18%  Similarity=0.229  Sum_probs=81.9

Q ss_pred             CEEEEEEcCC-CCEEEEE----eCCCc----EEEEECCCCeeE----EEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457          219 QVRGLAVSSK-HTYMFSA----GDDKQ----VKCWDLEQNKVI----RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       219 ~V~~l~~s~~-~~~l~s~----~~dg~----V~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      ...++.|+.. ...+.+.    +.+|.    -.+|++..++.-    ..+ ...+.|.|++++|+.+.|+.|+.||+|.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3456777753 3344443    23332    345666554322    222 47788999999999999999999999999


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK  334 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~  334 (485)
                      ||...+...  +....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            999776433  22345678899999999999999999999999987543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.13  E-value=0.0058  Score=61.43  Aligned_cols=240  Identities=13%  Similarity=0.155  Sum_probs=134.9

Q ss_pred             EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-----------cE
Q 011457          220 VRGLAVSSKHTYMFSA-GDDK----QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-----------VC  283 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~-~~dg----~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-----------~i  283 (485)
                      +....++|++++++.+ +..|    .|+++|+++++.+...-.. .....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467889999988855 3333    6999999999876543111 1123499999988777665443           37


Q ss_pred             EEEECCCCce--EEEeccCCc-c-EEEEEEcCCCCEEEEEeCC----CCEEEEECCCC----eEEeEeccCCCce-EEEE
Q 011457          284 RVWDIRTKMQ--IFALAGHDN-T-VCSVFTRPTDPQVVTGSHD----STIKFWDLRYG----KTMLTLTHHKKSV-RAMA  350 (485)
Q Consensus       284 ~iwd~~~~~~--~~~~~~~~~-~-v~~l~~~~~~~~l~s~s~d----g~I~iwd~~~~----~~~~~~~~~~~~v-~~l~  350 (485)
                      +.|.+.+...  ...+..... . ...+..++++++|+..+..    ..+.+.|+..+    .....+......+ ..+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            8888876643  234433332 2 6788899999998764433    24778888764    2333333333333 3343


Q ss_pred             ECCCCCEEEEEcCCC----EEEEECCCCce--eeeeccCCc--ccEEEEEeCCCCeEEEEeCCC--cEEEEeCCCCcccc
Q 011457          351 LHPTEDCFASASAEN----IKKFNLPKGEF--LHNMLSQQK--TIINSMAVNEEGVLATGGDNG--SLWFWDWKSGHNFQ  420 (485)
Q Consensus       351 ~~p~~~~l~~~~~~~----i~i~d~~~~~~--~~~~~~~~~--~~i~~~~~~~~~~l~sg~~dg--~I~iwd~~~~~~~~  420 (485)
                      .. .+.+++....+.    |...++.....  ....+..+.  ..+..+....+.+++..-.++  .|+++++..+....
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~  363 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR  363 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence            33 444555444432    77777776653  221223333  367777776666666666665  58888888232222


Q ss_pred             cceeeeccCCCCCCccEEEEEEccCCCEEEEE-E---CCCcEEEecCCCCCC
Q 011457          421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-E---ADKTIKMWREDETAT  468 (485)
Q Consensus       421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~---~Dg~I~iW~~~~~~~  468 (485)
                      ....       ...+.|..+...++++.+... +   .-++|..||+.++..
T Consensus       364 ~~~~-------p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  364 EIPL-------PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEES-------SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             eecC-------CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            2221       123446666666665554432 2   235777788776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.12  E-value=0.0038  Score=57.26  Aligned_cols=198  Identities=11%  Similarity=0.201  Sum_probs=115.5

Q ss_pred             EEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeccc-CCceEEEEEecCCCEEEEEECCCcEEEEECC
Q 011457          212 TLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVYCLGLHPTIDILLTGGRDSVCRVWDIR  289 (485)
Q Consensus       212 ~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~  289 (485)
                      .+.+-...+..|+|+|+.. ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-+++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4556666799999999755 5666677888988887 47888887533 3567889998888777776679999999984


Q ss_pred             CCc------eEEEec-----cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC---CeEEeE--------eccCCCceE
Q 011457          290 TKM------QIFALA-----GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY---GKTMLT--------LTHHKKSVR  347 (485)
Q Consensus       290 ~~~------~~~~~~-----~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~---~~~~~~--------~~~~~~~v~  347 (485)
                      ...      ....+.     .++..+-.++|++.++.|+++-...-..+|.+..   ...+..        .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      111121     2445689999999988888887777777776653   211111        112334578


Q ss_pred             EEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeeccCC--------cccEEEEEeCCCCeEEEEeCCCcEEEE
Q 011457          348 AMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNMLSQQ--------KTIINSMAVNEEGVLATGGDNGSLWFW  411 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~l~sg~~dg~I~iw  411 (485)
                      +++++|....|..-|+. . +..+| .+|+.+..+.-..        -...-.+++.++|.|...++-+..++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            99999986555444444 3 77888 6777655442211        134678999999977777777666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.11  E-value=2.6e-06  Score=84.25  Aligned_cols=196  Identities=19%  Similarity=0.272  Sum_probs=131.5

Q ss_pred             CcceEEEEEccCC--CEEEEEeCCCeEEEEECCCCce--EEEEcccccCEEEEEEcCC-CCEEEEEe----CCCcEEEEE
Q 011457          175 LGWVRSVAFDHSN--TWFCTGSADRTIKIWDVAKGTL--KLTLTGHIEQVRGLAVSSK-HTYMFSAG----DDKQVKCWD  245 (485)
Q Consensus       175 ~~~V~~l~~sp~~--~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~-~~~l~s~~----~dg~V~iwd  245 (485)
                      ...+.|+++..+.  ..++.|..+|.|-+-.+....-  .....++....++++|++- .+.||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4457777765533  4788999999999988754322  2345668889999999984 45566653    467899999


Q ss_pred             CCCC--eeE--EEecc-cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEEE
Q 011457          246 LEQN--KVI--RSYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVTG  319 (485)
Q Consensus       246 ~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~  319 (485)
                      +.++  .+.  ..+.+ ......+++|..+.+++++|.....+.++|++... .....-.+..+..+.+.| ..+++++.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceecc
Confidence            9876  211  12222 34456688899888899999999999999998432 111222345677778888 66677765


Q ss_pred             eCCCCEEEEE-CCCCe-EEeEeccCC----CceEEEEECCCCC-EEEEEcCCC--EEEEECC
Q 011457          320 SHDSTIKFWD-LRYGK-TMLTLTHHK----KSVRAMALHPTED-CFASASAEN--IKKFNLP  372 (485)
Q Consensus       320 s~dg~I~iwd-~~~~~-~~~~~~~~~----~~v~~l~~~p~~~-~l~~~~~~~--i~i~d~~  372 (485)
                      . ||.|.+|| .+.-+ ++..+...+    ..+..++|.|... .+++...+.  |+++++.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            5 99999999 43322 222222222    2488999999754 555666554  8888763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.10  E-value=2.6e-05  Score=77.08  Aligned_cols=113  Identities=15%  Similarity=0.114  Sum_probs=81.1

Q ss_pred             eEEEEEcc-CCCEEEEE----eCCCe----EEEEECCCCceEEE---EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          178 VRSVAFDH-SNTWFCTG----SADRT----IKIWDVAKGTLKLT---LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       178 V~~l~~sp-~~~~l~tg----s~dg~----I~iwd~~~~~~~~~---~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      ..++.|+- +...+.|.    +.+|.    -.+|++..++....   --.....|.+++++|+...|+.|+.||.|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            35666765 33344443    22332    35577665543321   123678899999999999999999999999999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      ...+...  +....-.++.++|||+|.++++|+..|.+.+||+.-..
T Consensus       288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            8766333  22345567899999999999999999999999986443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.0031  Score=62.47  Aligned_cols=202  Identities=16%  Similarity=0.199  Sum_probs=146.1

Q ss_pred             ceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeE
Q 011457          177 WVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQNKVI  252 (485)
Q Consensus       177 ~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~~~~~  252 (485)
                      .-..+++++.+. .+++...++.|.+.|..+.+......--. ....+++++++..+.++..   +++|.+.|-.+++.+
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            345678888777 44555556899999988777776654332 6678999999988877765   689999999999988


Q ss_pred             EEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEE-E---eccCCccEEEEEEcCCCCEEEEEeCC---CC
Q 011457          253 RSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIF-A---LAGHDNTVCSVFTRPTDPQVVTGSHD---ST  324 (485)
Q Consensus       253 ~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~-~---~~~~~~~v~~l~~~~~~~~l~s~s~d---g~  324 (485)
                      .....-..+ ..+++.|+|+.++... .++.|.+.|........ .   ...-...-..+.+++++..+.+....   +.
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            886543344 8999999999666665 78999999977665543 1   11223345678899999977665544   58


Q ss_pred             EEEEECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEEcCC--CEEEEECCCCceeeee
Q 011457          325 IKFWDLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASASAE--NIKKFNLPKGEFLHNM  380 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~  380 (485)
                      +...|..++........-.. ....+.++|+|..+.+....  .+.+.|..+.......
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence            99999998877665222222 56778999999988877544  3888888887766654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.0087  Score=59.26  Aligned_cols=243  Identities=17%  Similarity=0.194  Sum_probs=159.8

Q ss_pred             ceEEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEE
Q 011457          177 WVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFS-AGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~V~iwd~~~~~~~~~  254 (485)
                      ....+.+.+++..+.... ....+...+............-...-..+++++.+..++. ...++.|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            455677777775443332 2224555554422222211111133457788888875554 44568999999888887777


Q ss_pred             ecccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEEC
Q 011457          255 YHGHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDL  330 (485)
Q Consensus       255 ~~~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~  330 (485)
                      ...-. ....+++.++++.+.++..   ++++.+.|-.+.+.+.....-..+ ..+++.|++..+++.. .++.|.++|.
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            65322 6678999999987777766   689999999988888775433334 8899999999776655 7889999997


Q ss_pred             CCCeEEe-E---eccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCceeee-eccCCcccEEEEEeCCCC-eEE
Q 011457          331 RYGKTML-T---LTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEFLHN-MLSQQKTIINSMAVNEEG-VLA  400 (485)
Q Consensus       331 ~~~~~~~-~---~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~l~  400 (485)
                      ....... .   .......-..+.+.|++..+......    .+...|..++..... ...... ....+..+|+| .+.
T Consensus       190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~y  268 (381)
T COG3391         190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAY  268 (381)
T ss_pred             CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEE
Confidence            7655543 1   11122345678999999966555433    488888888877665 222333 55678889999 444


Q ss_pred             EE-eCCCcEEEEeCCCCcccccc
Q 011457          401 TG-GDNGSLWFWDWKSGHNFQQA  422 (485)
Q Consensus       401 sg-~~dg~I~iwd~~~~~~~~~~  422 (485)
                      +. ...+.+.+.|..+.......
T Consensus       269 v~~~~~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         269 VANSQGGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             EEecCCCeEEEEeCCCCceeeee
Confidence            44 34588999998876665543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.02  E-value=0.0042  Score=60.06  Aligned_cols=210  Identities=11%  Similarity=0.123  Sum_probs=122.6

Q ss_pred             CeEEEEECCCCceEEEEccc-ccCEEEE---EEcC----CCCEEEEEeC----------CCcEEEEECCCC----eeEEE
Q 011457          197 RTIKIWDVAKGTLKLTLTGH-IEQVRGL---AVSS----KHTYMFSAGD----------DKQVKCWDLEQN----KVIRS  254 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h-~~~V~~l---~~s~----~~~~l~s~~~----------dg~V~iwd~~~~----~~~~~  254 (485)
                      ..|++.|..+.+.+.++.-. ...+.++   .+..    ...+|++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36888898888777665432 2334444   3433    2577887753          289999999884    12222


Q ss_pred             e--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc-eEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457          255 Y--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-QIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL  330 (485)
Q Consensus       255 ~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~  330 (485)
                      +  ....++|++++-. ++ .|+++. ++.|.+|++...+ ....-. .....+.++...  ++++++|.....+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            2  2357889999877 33 444443 5789999998877 333222 123366666655  669999999999888854


Q ss_pred             CC-CeEEeEec--cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCC-------Cc--eeeeeccCCcccEEEE---EeC
Q 011457          331 RY-GKTMLTLT--HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK-------GE--FLHNMLSQQKTIINSM---AVN  394 (485)
Q Consensus       331 ~~-~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~-------~~--~~~~~~~~~~~~i~~~---~~~  394 (485)
                      .. ...+..+.  .....+.++.+-+++..++++..++ +.++..+.       +.  ......-+....++++   .+.
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            43 33233332  2345688888886666777776666 77776652       22  2222222344567777   444


Q ss_pred             C--CC-------eEEEEeCCCcEEEE
Q 011457          395 E--EG-------VLATGGDNGSLWFW  411 (485)
Q Consensus       395 ~--~~-------~l~sg~~dg~I~iw  411 (485)
                      +  .+       .++.++.+|.|...
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            4  11       38889999999844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.00  E-value=0.0014  Score=63.48  Aligned_cols=218  Identities=10%  Similarity=0.158  Sum_probs=119.6

Q ss_pred             CcEEEEECCCCeeEEEecc-cCCceEEEEE---ecC----CCEEEEEEC----------CCcEEEEECCCC----ceEEE
Q 011457          239 KQVKCWDLEQNKVIRSYHG-HLSGVYCLGL---HPT----IDILLTGGR----------DSVCRVWDIRTK----MQIFA  296 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~-h~~~v~~l~~---~~~----~~~l~sg~~----------dg~i~iwd~~~~----~~~~~  296 (485)
                      ..|++.|..+.+.+..+.- ....+.+++.   ..+    ..+|++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4688999888887776642 2234454443   322    457877754          289999999884    12221


Q ss_pred             e--ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-EEeEec-cCCCceEEEEECCCCCEEEEEcC-CCEEEE--
Q 011457          297 L--AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-TMLTLT-HHKKSVRAMALHPTEDCFASASA-ENIKKF--  369 (485)
Q Consensus       297 ~--~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~-~~i~i~--  369 (485)
                      +  ....++|++++-. ++ .|+++. ++.|.+|++...+ ....-. .....+.++...  +.+++.+.. +++.++  
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            1  2357889998776 33 454444 5889999998877 333222 122355555554  557777765 456655  


Q ss_pred             ECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccc-ce-eeeccCCCCCCccEEEE---EEc
Q 011457          370 NLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQ-AQ-TIVQPGSLDSEAGIYAL---SYD  443 (485)
Q Consensus       370 d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~-~~-~~~~~~~~~~~~~V~~l---~~s  443 (485)
                      +....+....-.......+.++.+-.++ .++++..+|.+.++.......... .. .............|+++   ++.
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            5433323222223334557777776444 999999999999998863211000 00 01111112234557777   544


Q ss_pred             c--CC------CEEEEEECCCcEEEe
Q 011457          444 V--TG------SRLVTCEADKTIKMW  461 (485)
Q Consensus       444 ~--~g------~~L~s~~~Dg~I~iW  461 (485)
                      +  .+      ..++.++.+|.|.+.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            5  12      248888899999843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.97  E-value=0.00021  Score=75.13  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=103.0

Q ss_pred             CEEEEE-eCCCcEEEEECCCCeeEEEecccCCc-eEEEEEec-----CCCEEEEEECCCcEEEEECCCCc--eEEE-e--
Q 011457          230 TYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSG-VYCLGLHP-----TIDILLTGGRDSVCRVWDIRTKM--QIFA-L--  297 (485)
Q Consensus       230 ~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~-----~~~~l~sg~~dg~i~iwd~~~~~--~~~~-~--  297 (485)
                      ++|+.- .....|+-.|++.|+.+..+..|... |..++-..     +....+.|-.+..+..||.|-..  .+.. .  
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            444433 35688999999999999999877654 54443221     13356778888999999998643  2211 1  


Q ss_pred             ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEEC
Q 011457          298 AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNL  371 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~  371 (485)
                      .......+|++...+| +||+|+.+|.||+||--..+....+.+.+.+|..|..+.||+++++.+...+.+++.
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            1234567888877776 899999999999999443333345567788999999999999999999999888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.95  E-value=0.0023  Score=63.15  Aligned_cols=207  Identities=11%  Similarity=0.079  Sum_probs=121.4

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE--cc------cccCEEEEEEcC-----CC
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL--TG------HIEQVRGLAVSS-----KH  229 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~------h~~~V~~l~~s~-----~~  229 (485)
                      ..+.++..+....+.|++++.| |=.++|.|..+|.+.|.|+.....+..-  ..      ....|+++.|.-     |+
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            3477788888889999999998 5568999999999999999766666542  22      234688888862     33


Q ss_pred             ---CEEEEEeCCCcEEEEECC--C-CeeE----EEecccCCceEEEEEe-cC-C-------------------CEEEEEE
Q 011457          230 ---TYMFSAGDDKQVKCWDLE--Q-NKVI----RSYHGHLSGVYCLGLH-PT-I-------------------DILLTGG  278 (485)
Q Consensus       230 ---~~l~s~~~dg~V~iwd~~--~-~~~~----~~~~~h~~~v~~l~~~-~~-~-------------------~~l~sg~  278 (485)
                         -.|++|...|.+.+|.+.  . +...    .....+.+.|..+..- .+ |                   +-++...
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence               468899999999999874  1 2221    2222455666666532 21 0                   2244555


Q ss_pred             CCCcEEEEECCCCceEEEeccCCccEEEEEE-----cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC----CceEEE
Q 011457          279 RDSVCRVWDIRTKMQIFALAGHDNTVCSVFT-----RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK----KSVRAM  349 (485)
Q Consensus       279 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-----~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----~~v~~l  349 (485)
                      .+..++++..-+.+..+......-....+.+     ...+..|++-..+|.|++|.+-..+.+..+....    ..+...
T Consensus       233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            5778999999888777665522223333344     2356678888999999999999988887765532    245566


Q ss_pred             EECCCCCEEEEEcCCCEEEEE
Q 011457          350 ALHPTEDCFASASAENIKKFN  370 (485)
Q Consensus       350 ~~~p~~~~l~~~~~~~i~i~d  370 (485)
                      .++++|..++-.+...+.++.
T Consensus       313 sis~~Gdi~~~~gpsE~~l~s  333 (395)
T PF08596_consen  313 SISRNGDIFYWTGPSEIQLFS  333 (395)
T ss_dssp             EE-TTS-EEEE-SSSEEEEEE
T ss_pred             EECCCCCEEEEeCcccEEEEE
Confidence            778888888777766654444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.95  E-value=0.00069  Score=67.44  Aligned_cols=174  Identities=14%  Similarity=0.075  Sum_probs=110.3

Q ss_pred             cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEE---ECC-CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCE
Q 011457          240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTG---GRD-SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ  315 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg---~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~  315 (485)
                      .+.+-|.+ +...+.+..-...+..-.|+|++..++..   ... ..+.++|+.+++....+. ..+.-....|+|+|+.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence            34444443 55555555455667778899998865443   222 469999999887665554 3444556789999988


Q ss_pred             EEE-EeCCCC--EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccE
Q 011457          316 VVT-GSHDST--IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       316 l~s-~s~dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      |+. ...||.  |.++|+..+. ...+....+.-..=.|+|+|+.++-.++.+    |.+++.+.+............  
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--  328 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--  328 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--
Confidence            764 445665  6666887666 333544444444668999999998877664    888888777653332222222  


Q ss_pred             EEEEeCCCC-eEEEEe-CCCc--EEEEeCCCCcc
Q 011457          389 NSMAVNEEG-VLATGG-DNGS--LWFWDWKSGHN  418 (485)
Q Consensus       389 ~~~~~~~~~-~l~sg~-~dg~--I~iwd~~~~~~  418 (485)
                      ..-.++|+| +++..+ .+|.  |.+.|+.++..
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            277789999 444433 3455  66777766653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.91  E-value=0.0015  Score=64.99  Aligned_cols=194  Identities=18%  Similarity=0.116  Sum_probs=118.2

Q ss_pred             eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeeEEEecccCCceEEEEEecCCCE
Q 011457          198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG---DD-KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI  273 (485)
Q Consensus       198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---~d-g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  273 (485)
                      .+.+-|.. +.....+......+..-+|+|++..++-..   .. ..+.++|+.+++...... ..+.-..-+|+|||+.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence            44444433 444555555556677788999987655432   22 469999999887655544 3333456789999986


Q ss_pred             EEEE-ECCCc--EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CCC--EEEEECCCCeEEeEeccCCCceE
Q 011457          274 LLTG-GRDSV--CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DST--IKFWDLRYGKTMLTLTHHKKSVR  347 (485)
Q Consensus       274 l~sg-~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg~--I~iwd~~~~~~~~~~~~~~~~v~  347 (485)
                      |+.. ..||.  |.++|+..+. ...+..-.+.-+.-.|+|+|+.++-.+. .|.  |.++|...+.. ..+......-.
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~  329 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS  329 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence            6544 55665  6666777666 3335544444457789999998876554 443  66667665544 33433333333


Q ss_pred             EEEECCCCCEEEEEcC--CC--EEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457          348 AMALHPTEDCFASASA--EN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~--~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  397 (485)
                      .-.|+|+|++++..+.  +.  |.+.++.++...+.+  ........-.+.+++
T Consensus       330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng  381 (425)
T COG0823         330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNG  381 (425)
T ss_pred             CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCC
Confidence            7789999999988773  33  777777666643322  122223334455555

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.88  E-value=0.0095  Score=59.47  Aligned_cols=173  Identities=14%  Similarity=0.132  Sum_probs=90.7

Q ss_pred             cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-------cCCccEEEEEEcCC
Q 011457          240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-------GHDNTVCSVFTRPT  312 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~  312 (485)
                      .|.||+.. |+.+.++.-..+.+.++.|..+ ..|++...||.+++||+.... ...+.       -....+....+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            48888864 6666665433488999999886 456677899999999997333 11111       11122222233334


Q ss_pred             CCEEEEEeCCCCEEEEECCCCe-EEeEeccCCC---------ceEE-EEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGK-TMLTLTHHKK---------SVRA-MALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~---------~v~~-l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      |  ++.-..++.+.+.+-.... ....+.....         .... ..++.+....+....+. +.+.+....+.    
T Consensus       139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----  212 (410)
T PF04841_consen  139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----  212 (410)
T ss_pred             C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----
Confidence            4  3333344555444322211 1111110000         0000 22333333333333332 44333222111    


Q ss_pred             ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc
Q 011457          381 LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA  422 (485)
Q Consensus       381 ~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~  422 (485)
                       ....+.+..|++||++ +++.-..+|.+.+.+..-.+.+..+
T Consensus       213 -i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  213 -IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             -ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence             1124579999999999 8888888999999876555444433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.78  E-value=0.04  Score=54.39  Aligned_cols=89  Identities=13%  Similarity=0.228  Sum_probs=60.3

Q ss_pred             EEEEccCCCEEEEEeCCCeEEE---EECC-----CCceEEEEcc---cc--cCEEEEEEcC-----------CCCEEEEE
Q 011457          180 SVAFDHSNTWFCTGSADRTIKI---WDVA-----KGTLKLTLTG---HI--EQVRGLAVSS-----------KHTYMFSA  235 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~i---wd~~-----~~~~~~~~~~---h~--~~V~~l~~s~-----------~~~~l~s~  235 (485)
                      .++.+|++++||.+..+..+.+   |+..     .+.......+   +.  +.|+++.+-|           |...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4678899999999988776666   6431     1222222221   11  4677766643           45789999


Q ss_pred             eCCCcEEEEECCCCeeEEEecccCCceEEEEEec
Q 011457          236 GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP  269 (485)
Q Consensus       236 ~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~  269 (485)
                      ..+|.|++|.. +|..+..-.-|..+|..+.+..
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            99999999985 6776666566888888887754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.75  E-value=0.019  Score=56.38  Aligned_cols=220  Identities=16%  Similarity=0.142  Sum_probs=123.1

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-EEccc----------------ccCEEEEEEcCCCCEEEEEeC
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGH----------------IEQVRGLAVSSKHTYMFSAGD  237 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h----------------~~~V~~l~~s~~~~~l~s~~~  237 (485)
                      ...+....|+|+|++++-.. ++.|.+++..++.... +..+.                -+.-..+.||||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788999999999998885 5789999987774432 22220                112356889999999887643


Q ss_pred             C-Cc-----------------------------------EEEEECCCCeeEE--Ee---cccCCceEEEEEecCCCEEEE
Q 011457          238 D-KQ-----------------------------------VKCWDLEQNKVIR--SY---HGHLSGVYCLGLHPTIDILLT  276 (485)
Q Consensus       238 d-g~-----------------------------------V~iwd~~~~~~~~--~~---~~h~~~v~~l~~~~~~~~l~s  276 (485)
                      | ..                                   +.++|+.+++...  ..   ..-...+..+.|.++++.|+.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            3 22                                   3334444443321  11   123445788999999883333


Q ss_pred             --EECCC---cEEEEECCCCceEEEecc-CCcc---EEEEEEc-CCCC-EEEEEeCCCCE--EEEECCCCeEEeEeccCC
Q 011457          277 --GGRDS---VCRVWDIRTKMQIFALAG-HDNT---VCSVFTR-PTDP-QVVTGSHDSTI--KFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       277 --g~~dg---~i~iwd~~~~~~~~~~~~-~~~~---v~~l~~~-~~~~-~l~s~s~dg~I--~iwd~~~~~~~~~~~~~~  343 (485)
                        ..++.   .+.++|..++........ ....   .....+. +++. +|.....||.-  .+++...+. ...++...
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~  279 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD  279 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence              33433   466778877665443332 1222   2244443 5444 55556677764  445655554 44565555


Q ss_pred             CceEE-EEECCCCCEEE-EEcCC-----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457          344 KSVRA-MALHPTEDCFA-SASAE-----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       344 ~~v~~-l~~~p~~~~l~-~~~~~-----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  397 (485)
                      -.|.. +.+++++..+. .+..+     .++..++..+..+..+....... ..+.++|++
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~Spdg  339 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFSPDG  339 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-TTS
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEECCCC
Confidence            56744 67788876554 44332     27777777333344443322222 788999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.74  E-value=0.001  Score=70.12  Aligned_cols=135  Identities=16%  Similarity=0.242  Sum_probs=96.6

Q ss_pred             eCCCCEEEEECCCCeEEeEeccCCCc-eEEEEECC------CCCEEEEEcCCCEEEEECCCCc--eeeee--ccCCcccE
Q 011457          320 SHDSTIKFWDLRYGKTMLTLTHHKKS-VRAMALHP------TEDCFASASAENIKKFNLPKGE--FLHNM--LSQQKTII  388 (485)
Q Consensus       320 s~dg~I~iwd~~~~~~~~~~~~~~~~-v~~l~~~p------~~~~l~~~~~~~i~i~d~~~~~--~~~~~--~~~~~~~i  388 (485)
                      .....|+-.|+..|+.+..+..+... |..++-..      ....|+.-+.+.+..||.+-..  .+...  .-......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34678999999999999999887654 55554321      3467888888889999987642  22211  11234568


Q ss_pred             EEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          389 NSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       389 ~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      +|++.+.+|+||+|+.+|.|++||- .|..-.+.       ..+-..+|.++..+.||++|++.+. ..|.+++.
T Consensus       581 s~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~-------lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTA-------LPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             eEEEecCCceEEEEeCCCcEEeecc-cchhhhhc-------CCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            8999999999999999999999993 33221111       1134678999999999999987764 56667664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.74  E-value=9.9e-05  Score=45.33  Aligned_cols=39  Identities=38%  Similarity=0.670  Sum_probs=35.2

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      .++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            356677889999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.00017  Score=71.70  Aligned_cols=94  Identities=11%  Similarity=0.030  Sum_probs=79.9

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVR-GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      .-.|.-+.|+|.-.++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457789999999999999999999999988 777888887777777 99999999999999999999999999998877


Q ss_pred             Eec-ccCCceEEEEEec
Q 011457          254 SYH-GHLSGVYCLGLHP  269 (485)
Q Consensus       254 ~~~-~h~~~v~~l~~~~  269 (485)
                      .+. .-...|.++.|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            631 2445677777764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.00064  Score=66.43  Aligned_cols=142  Identities=13%  Similarity=0.223  Sum_probs=104.7

Q ss_pred             CCCEE-EEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-------EEEEEECCCcEEEEECCCCce--EEEe
Q 011457          228 KHTYM-FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-------ILLTGGRDSVCRVWDIRTKMQ--IFAL  297 (485)
Q Consensus       228 ~~~~l-~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-------~l~sg~~dg~i~iwd~~~~~~--~~~~  297 (485)
                      +.++| .++.....++-.|++.|+.+..+.-+.. |.-+.+.|+.+       .-+.|-.|..|.-||++-...  +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            33444 4555667788999999999999986665 88888888643       235677788999999984322  2222


Q ss_pred             ccC----CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEEC
Q 011457          298 AGH----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNL  371 (485)
Q Consensus       298 ~~~----~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~  371 (485)
                      ++|    .....|.+...+| ++++||.+|.|++||--.......+.+...+|..+..+.+|.++++.+...+.+.++
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence            222    2355666666555 899999999999999743344456777889999999999999999999888777765

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.00088  Score=67.66  Aligned_cols=157  Identities=7%  Similarity=0.099  Sum_probs=107.9

Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce-
Q 011457          216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ-  293 (485)
Q Consensus       216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~-  293 (485)
                      +...|.--+++..+.+++.|+.-|.+.+|+-..++.... ..+..+.+..+.++++..+++.|+..|.|.++-++.... 
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            344555566777899999999999999999776654332 223455667778888888999999999999998876432 


Q ss_pred             --EEEe---ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC----eEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457          294 --IFAL---AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG----KTMLTLTHHKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       294 --~~~~---~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                        .+.-   +.|...|++++|++++..|++|...|.|..-.+...    -....+....+.|..+...  ..++.+++.-
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~  189 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT  189 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence              1111   237789999999999999999999999999888761    1122233334566666554  3344444444


Q ss_pred             CEEEEECCCC
Q 011457          365 NIKKFNLPKG  374 (485)
Q Consensus       365 ~i~i~d~~~~  374 (485)
                      ...+++.+.+
T Consensus       190 r~~Lc~tE~e  199 (726)
T KOG3621|consen  190 RCILCQTEAE  199 (726)
T ss_pred             hhheeecchh
Confidence            4444554443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.66  E-value=0.022  Score=60.99  Aligned_cols=230  Identities=13%  Similarity=0.208  Sum_probs=128.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccC--------EEEEEEcC----------------CCCEEEEEeCCCcEE
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ--------VRGLAVSS----------------KHTYMFSAGDDKQVK  242 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~--------V~~l~~s~----------------~~~~l~s~~~dg~V~  242 (485)
                      +..|+.++.++.|.-.|..+|+.+..+......        .+.+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777888899999999999988887543211        12233321                234788899999999


Q ss_pred             EEECCCCeeEEEecccCCceE-------------EEEEec--CCCEEEEEEC----------CCcEEEEECCCCceEEEe
Q 011457          243 CWDLEQNKVIRSYHGHLSGVY-------------CLGLHP--TIDILLTGGR----------DSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~  297 (485)
                      -.|.++|+.+..+. ..+.|.             .+.-.|  .++.+++|+.          +|.|+-+|.++++.+..+
T Consensus       274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            99999999998764 222221             111112  1346666653          688999999999999887


Q ss_pred             ccCCccEEEEEEcCCCCEEEEEeCCC-CEEEEECCCCeEEeEeccCCCceEEEEECCCCC-EEEEEcCCCEEEEECCCCc
Q 011457          298 AGHDNTVCSVFTRPTDPQVVTGSHDS-TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED-CFASASAENIKKFNLPKGE  375 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~i~i~d~~~~~  375 (485)
                      ..-.......  -+.+.....++.+. ...-+|.+.+....-. +...+    .+....+ ...-...+.|.-.|..+|+
T Consensus       353 ~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD~~TGk  425 (764)
T TIGR03074       353 DPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALDATTGK  425 (764)
T ss_pred             ecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccceEEEEeCCCCc
Confidence            6311111110  11222222222221 2334444443322111 11000    0000000 0000112347778888888


Q ss_pred             eeeeeccCCcc--------cEEEEEeCC-CC----eEEEEeCCCcEEEEeCCCCccccccee
Q 011457          376 FLHNMLSQQKT--------IINSMAVNE-EG----VLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       376 ~~~~~~~~~~~--------~i~~~~~~~-~~----~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      ....+...+.+        ...-+.+.. +|    .++.++.+|.++++|.++|+.+.....
T Consensus       426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            87766442321        111122222 44    789999999999999999998776544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00029  Score=70.13  Aligned_cols=93  Identities=11%  Similarity=0.119  Sum_probs=79.1

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceE-EEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVY-CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF  295 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  295 (485)
                      ...|..+.|+|.-.+||.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3567889999999999999999999999988 777888876777777 99999999999999999999999999988776


Q ss_pred             Eec-cCCccEEEEEEc
Q 011457          296 ALA-GHDNTVCSVFTR  310 (485)
Q Consensus       296 ~~~-~~~~~v~~l~~~  310 (485)
                      ... .....|.++.|.
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            632 245667777775

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.60  E-value=0.069  Score=50.81  Aligned_cols=217  Identities=15%  Similarity=0.091  Sum_probs=126.7

Q ss_pred             EEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc---
Q 011457          224 AVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG---  299 (485)
Q Consensus       224 ~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---  299 (485)
                      .|.++... +++--..+.|.-|+..+++. ..+. +.+.+.++.....+..|+++. . -+.+++.+++..+..+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccC
Confidence            46666664 44445678899998876543 2232 334445555554544555543 3 356677665555333321   


Q ss_pred             --CCccEEEEEEcCCCCEEEEEeC-----------CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-
Q 011457          300 --HDNTVCSVFTRPTDPQVVTGSH-----------DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-  365 (485)
Q Consensus       300 --~~~~v~~l~~~~~~~~l~s~s~-----------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-  365 (485)
                        .....+.+.+.|+|.+.+....           -|.|+.+|. .+..+..+..+-..-+.|+||||++.|..+.... 
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence              1234567788888876665433           133444443 4555655555555668899999998877776643 


Q ss_pred             -EEEEECCC--C----ceeeeeccCCcccEEEEEeCCCCeEE-EEeCCC-cEEEEeCCCCcccccceeeeccCCCCCCcc
Q 011457          366 -IKKFNLPK--G----EFLHNMLSQQKTIINSMAVNEEGVLA-TGGDNG-SLWFWDWKSGHNFQQAQTIVQPGSLDSEAG  436 (485)
Q Consensus       366 -i~i~d~~~--~----~~~~~~~~~~~~~i~~~~~~~~~~l~-sg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  436 (485)
                       |..|++..  +    ...........+..-.++...+|.+. ++..+| .|.+|+.. |+.+......        ...
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--------~~~  256 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--------VKR  256 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--------CCC
Confidence             77777652  1    11122223345566677888888444 444444 99999988 8777666532        244


Q ss_pred             EEEEEEc-cCCCEEEEEEC
Q 011457          437 IYALSYD-VTGSRLVTCEA  454 (485)
Q Consensus       437 V~~l~~s-~~g~~L~s~~~  454 (485)
                      +++++|- ++.+.|+..+.
T Consensus       257 ~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         257 PTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CccceEeCCCcCEEEEEec
Confidence            6777774 34455554443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.60  E-value=0.0074  Score=47.17  Aligned_cols=100  Identities=12%  Similarity=0.225  Sum_probs=71.7

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457          220 VRGLAVSS---KH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF  295 (485)
Q Consensus       220 V~~l~~s~---~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  295 (485)
                      |++|++..   +| +.|++|+.|..|++|+-  .+.+..+. -.+.|.++.-... ..++.+..+|+|-+|+-  ...++
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            56666654   22 67999999999999974  46777776 4567888877766 67999999999999986  34466


Q ss_pred             EeccCCccEEEEEEcC-CC---CEEEEEeCCCCEE
Q 011457          296 ALAGHDNTVCSVFTRP-TD---PQVVTGSHDSTIK  326 (485)
Q Consensus       296 ~~~~~~~~v~~l~~~~-~~---~~l~s~s~dg~I~  326 (485)
                      ..+.... +.++.+.. ++   +.|++|-.+|.|-
T Consensus        76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            6664333 55555443 32   3688998888764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.59  E-value=0.0088  Score=46.76  Aligned_cols=100  Identities=14%  Similarity=0.160  Sum_probs=70.3

Q ss_pred             eEEEEEcc---CC-CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          178 VRSVAFDH---SN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       178 V~~l~~sp---~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      |+++++..   +| +.|++|+.|..|+||+-  .+.+..+. ..+.|++++-... ..++.+..+|+|-+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            56677654   22 58999999999999983  46666666 4467888877766 56888889999999975  34445


Q ss_pred             EecccCCceEEEEEec-CC---CEEEEEECCCcEE
Q 011457          254 SYHGHLSGVYCLGLHP-TI---DILLTGGRDSVCR  284 (485)
Q Consensus       254 ~~~~h~~~v~~l~~~~-~~---~~l~sg~~dg~i~  284 (485)
                      ..+.. ..+.++++.. ++   .-|++|-.+|.|-
T Consensus        76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            55533 3466666654 22   2788888888764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.59  E-value=0.051  Score=49.76  Aligned_cols=180  Identities=16%  Similarity=0.134  Sum_probs=114.7

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEecccC-CceEEEEEecCCCEEEEEECCCcEEEEECCCCceE
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDK--QVKCWDLEQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI  294 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg--~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  294 (485)
                      .....+.|..++.++-+.|.-|  .|+.+|+.+++......-.. ----.++...+ .+..-.=.++...+||..+.+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEE
Confidence            4456788877888888887666  89999999998876654221 11233444432 33334455889999999999888


Q ss_pred             EEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--C---CceEEEEECCCCCEEEEEcCC-CEEE
Q 011457          295 FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--K---KSVRAMALHPTEDCFASASAE-NIKK  368 (485)
Q Consensus       295 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~---~~v~~l~~~p~~~~l~~~~~~-~i~i  368 (485)
                      .++.- .+.=..++  .++..|+.+.....|+++|..+.+....+...  .   ..++-+.+. +|...|-.-.. .|..
T Consensus       124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~  199 (264)
T PF05096_consen  124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR  199 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence            88763 45556666  35677877777788999999887776655432  2   245667775 56666655444 4999


Q ss_pred             EECCCCceeeeec--------------cCCcccEEEEEeCCCC--eEEEE
Q 011457          369 FNLPKGEFLHNML--------------SQQKTIINSMAVNEEG--VLATG  402 (485)
Q Consensus       369 ~d~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~--~l~sg  402 (485)
                      .|..+|+....+.              .......+.+++.+..  ++++|
T Consensus       200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            9999998876541              0124679999998876  55555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.53  E-value=0.018  Score=60.04  Aligned_cols=206  Identities=8%  Similarity=-0.031  Sum_probs=111.5

Q ss_pred             CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeeEEEecccCCceEEEEE
Q 011457          196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG------DDK--QVKCWDLEQNKVIRSYHGHLSGVYCLGL  267 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~------~dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~  267 (485)
                      +|.+.-.+-..-..+.-..+....+...+++|+|+.++..-      .|+  .|.+++.. +.. +.+.. ....+.-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceE
Confidence            56654443222122222223334678899999999887664      244  45555542 222 33321 223788899


Q ss_pred             ecCCCEEEEEECC------------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE---EECCC
Q 011457          268 HPTIDILLTGGRD------------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF---WDLRY  332 (485)
Q Consensus       268 ~~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i---wd~~~  332 (485)
                      +|+|+.|++....            +.+.+.+++.++...   .....|..+.|+|||..++... +|.|.+   -....
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~  480 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED  480 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence            9998877776533            233333443333222   2356799999999999888765 477776   44344


Q ss_pred             CeE-E---eEecc-CCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeee-ccCCcccEEEEEeCCCCeEEEEeC
Q 011457          333 GKT-M---LTLTH-HKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEGVLATGGD  404 (485)
Q Consensus       333 ~~~-~---~~~~~-~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~sg~~  404 (485)
                      |.. +   ..+.. ....+.++.|..++.+++......  +...++. |.....+ .......+..++-+++ .++....
T Consensus       481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~  558 (591)
T PRK13616        481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS-TVYVTDA  558 (591)
T ss_pred             CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc-eEEEEcC
Confidence            431 1   11222 233468899999998765544333  4444443 2221111 1112345666666654 4555566


Q ss_pred             CCcEEE
Q 011457          405 NGSLWF  410 (485)
Q Consensus       405 dg~I~i  410 (485)
                      +|.+.+
T Consensus       559 ~g~~~l  564 (591)
T PRK13616        559 RAVLQL  564 (591)
T ss_pred             CceEEe
Confidence            664443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.50  E-value=0.017  Score=60.20  Aligned_cols=209  Identities=11%  Similarity=0.035  Sum_probs=115.5

Q ss_pred             CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE------CCC--cEEEEECCCCceEEEeccCCccEEEEEE
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG------RDS--VCRVWDIRTKMQIFALAGHDNTVCSVFT  309 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~  309 (485)
                      +|.+.-.+-..-..+.-..+....+...+++|+|+.++...      .|.  .|.+++.. +.......+  ...+.-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceE
Confidence            56554443222122222223334678899999999877665      243  55555652 222222232  24788899


Q ss_pred             cCCCCEEEEEeCC------------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEE---EECCCC
Q 011457          310 RPTDPQVVTGSHD------------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK---FNLPKG  374 (485)
Q Consensus       310 ~~~~~~l~s~s~d------------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i---~d~~~~  374 (485)
                      +|+|..+++....            +.+.+.++..+....   .....|..+.|+|||..++....+.+++   -....|
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G  481 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDG  481 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCC
Confidence            9998877766532            233333443333222   2245799999999999888877666655   444455


Q ss_pred             ce-e---eeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEE
Q 011457          375 EF-L---HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLV  450 (485)
Q Consensus       375 ~~-~---~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~  450 (485)
                      .. +   ..+.......+..+.|..++.|+++..++.-.+|.+.-........     ...+....+.+++-+++  .|+
T Consensus       482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-----~~~n~~~~v~~vaa~~~--~iy  554 (591)
T PRK13616        482 QYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-----PSRNLSAPVVAVAASPS--TVY  554 (591)
T ss_pred             ceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccccc-----CCCCccCceEEEecCCc--eEE
Confidence            41 1   1122223334578899999966676666655556543221111110     01123456777777763  466


Q ss_pred             EEECCCcEE
Q 011457          451 TCEADKTIK  459 (485)
Q Consensus       451 s~~~Dg~I~  459 (485)
                      ....+|.+.
T Consensus       555 v~~~~g~~~  563 (591)
T PRK13616        555 VTDARAVLQ  563 (591)
T ss_pred             EEcCCceEE
Confidence            666777433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.1  Score=49.73  Aligned_cols=207  Identities=13%  Similarity=0.094  Sum_probs=124.1

Q ss_pred             EEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec----
Q 011457          182 AFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH----  256 (485)
Q Consensus       182 ~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~----  256 (485)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++..-..+..|+++.  .-+.+++++++..+..+.    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence            3556555 4455556788999998766433 232 233445555444555556553  336777877666533332    


Q ss_pred             c-cCCceEEEEEecCCCEEEEEEC-----------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC-C
Q 011457          257 G-HLSGVYCLGLHPTIDILLTGGR-----------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-S  323 (485)
Q Consensus       257 ~-h~~~v~~l~~~~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g  323 (485)
                      + .....+.+...|+|.+.++.-.           -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+..... +
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence            1 1244567888888876554333           133444443 455666665556667889999999888776654 7


Q ss_pred             CEEEEECCC--C----eE-EeEeccCCCceEEEEECCCCCEEEEEcCC--CEEEEECCCCceeeeeccCCcccEEEEEeC
Q 011457          324 TIKFWDLRY--G----KT-MLTLTHHKKSVRAMALHPTEDCFASASAE--NIKKFNLPKGEFLHNMLSQQKTIINSMAVN  394 (485)
Q Consensus       324 ~I~iwd~~~--~----~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  394 (485)
                      .|.-|++..  +    +. ...+....+..-.++...+|.+.+++..+  .|..|+.. |+.+..+.... ..+++++|-
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~Fg  263 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFG  263 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEe
Confidence            788887752  1    11 12222334555667788888888655554  48889887 88888775554 445555554


Q ss_pred             C
Q 011457          395 E  395 (485)
Q Consensus       395 ~  395 (485)
                      .
T Consensus       264 G  264 (307)
T COG3386         264 G  264 (307)
T ss_pred             C
Confidence            3

>smart00320 WD40 WD40 repeats

Probab=97.45  E-value=0.00042  Score=42.37  Aligned_cols=39  Identities=21%  Similarity=0.531  Sum_probs=34.5

Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd  287 (485)
                      ++.+..+..|...|.++.|++++..+++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.0029  Score=62.04  Aligned_cols=138  Identities=12%  Similarity=0.206  Sum_probs=97.6

Q ss_pred             EEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC--------CEEEEEcCCCEEEEECCCCce-eeeecc----
Q 011457          316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE--------DCFASASAENIKKFNLPKGEF-LHNMLS----  382 (485)
Q Consensus       316 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~--------~~l~~~~~~~i~i~d~~~~~~-~~~~~~----  382 (485)
                      |..+.....|+-.|+..|+.+.....+.. |.-+.+.|+.        ..|+.-++.++..||.+-... ......    
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34555667788899999999999887766 7777777764        467777777899999863222 111111    


Q ss_pred             CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          383 QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       383 ~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      ......+|.+...+|++++|+.+|.|++||- .+..-...-       .+-..+|..+..+.+|++|++.+. ..+.+-+
T Consensus       428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-------PgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~  498 (644)
T KOG2395|consen  428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-------PGLGDAIKHVDVTADGKWILATCK-TYLLLID  498 (644)
T ss_pred             ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-------cccCCceeeEEeeccCcEEEEecc-cEEEEEE
Confidence            2235578899999999999999999999996 443332221       245678999999999999887664 4454444


Q ss_pred             C
Q 011457          463 E  463 (485)
Q Consensus       463 ~  463 (485)
                      .
T Consensus       499 t  499 (644)
T KOG2395|consen  499 T  499 (644)
T ss_pred             E
Confidence            3

>PHA02713 hypothetical protein; Provisional

Probab=97.42  E-value=0.019  Score=59.90  Aligned_cols=209  Identities=8%  Similarity=0.078  Sum_probs=101.9

Q ss_pred             eEEEEECCCCceEE--EEcccccCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEEEe--cccCCceEEEEE
Q 011457          198 TIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKHTYMFSAGDD------KQVKCWDLEQNKVIRSY--HGHLSGVYCLGL  267 (485)
Q Consensus       198 ~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~d------g~V~iwd~~~~~~~~~~--~~h~~~v~~l~~  267 (485)
                      .+..||..+++-..  .+...... .+++. -++...+.||.+      ..+..||..++.....-  ....... +++ 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-
Confidence            56778877665322  11111111 12222 256667777753      35788998877543211  1111111 222 


Q ss_pred             ecCCCEEEEEECCC-----cEEEEECCCCceEE--EeccCCccEEEEEEcCCCCEEEEEeCCC-----------------
Q 011457          268 HPTIDILLTGGRDS-----VCRVWDIRTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGSHDS-----------------  323 (485)
Q Consensus       268 ~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s~dg-----------------  323 (485)
                      .-++.+.+.||.++     .+..||..+.+-..  .+.........+.+  ++...+.|+.++                 
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence            22567778888764     47889987653211  11111111122222  566777777653                 


Q ss_pred             ------CEEEEECCCCeEE--eEeccCCCceEEEEECCCCCEEEEEcCC-------CEEEEECCC-Cce--eeeeccCCc
Q 011457          324 ------TIKFWDLRYGKTM--LTLTHHKKSVRAMALHPTEDCFASASAE-------NIKKFNLPK-GEF--LHNMLSQQK  385 (485)
Q Consensus       324 ------~I~iwd~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~~~~~~-------~i~i~d~~~-~~~--~~~~~~~~~  385 (485)
                            .+..||..+.+-.  ..+....... +++. -++..++.|+.+       .+..||..+ ++-  +..+ ....
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r  503 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRL  503 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-Cccc
Confidence                  4777887765432  1221111111 1222 245655655532       256788776 332  2221 1111


Q ss_pred             ccEEEEEeCCCCeEEEEeCCC--cEEEEeCCCC
Q 011457          386 TIINSMAVNEEGVLATGGDNG--SLWFWDWKSG  416 (485)
Q Consensus       386 ~~i~~~~~~~~~~l~sg~~dg--~I~iwd~~~~  416 (485)
                      . ...++...+.+.++|+.+|  .+..||..+.
T Consensus       504 ~-~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        504 S-ALHTILHDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             c-cceeEEECCEEEEEeeecceeehhhcCcccc
Confidence            2 2233333344788888888  6777776654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.40  E-value=0.021  Score=59.37  Aligned_cols=225  Identities=13%  Similarity=0.147  Sum_probs=116.7

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeE
Q 011457          186 SNTWFCTGSAD------RTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDD------KQVKCWDLEQNKVI  252 (485)
Q Consensus       186 ~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~d------g~V~iwd~~~~~~~  252 (485)
                      .+.+++.||.+      ..+..+|..+++......- ....-.++++. ++...++||.|      ..+..||..+++..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            45566777766      4788888877743332211 22223344444 45777888888      46888888887754


Q ss_pred             EEecccCCceEEEEE-ecCCCEEEEEECCCc-----EEEEECCCCceE--EEeccCCccEEEEEEcCCCCEEEEEeCCC-
Q 011457          253 RSYHGHLSGVYCLGL-HPTIDILLTGGRDSV-----CRVWDIRTKMQI--FALAGHDNTVCSVFTRPTDPQVVTGSHDS-  323 (485)
Q Consensus       253 ~~~~~h~~~v~~l~~-~~~~~~l~sg~~dg~-----i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-  323 (485)
                      ..-. -...-..+.. .-+|.+.++||.||.     |-.||..+.+--  ..+...........  -++...++|+.++ 
T Consensus       363 ~~a~-M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  363 PVAP-MNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGS  439 (571)
T ss_pred             ccCC-ccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCC
Confidence            4211 1111111111 125678889999874     677777654321  11111111122222  2577778888654 


Q ss_pred             -----CEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCCC------EEEEECCCCceeeeeccCCcccEEE
Q 011457          324 -----TIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAEN------IKKFNLPKGEFLHNMLSQQKTIINS  390 (485)
Q Consensus       324 -----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~~------i~i~d~~~~~~~~~~~~~~~~~i~~  390 (485)
                           ++..||..+++-..  .+........ ++. -++.+++.|+.++      +..||..+.+-...-..........
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g  517 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG  517 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence                 46788887654322  2221111111 222 2566666666554      6778877665433211111111222


Q ss_pred             EEeCCCCeEEEEeCCC-----cEEEEeCCCC
Q 011457          391 MAVNEEGVLATGGDNG-----SLWFWDWKSG  416 (485)
Q Consensus       391 ~~~~~~~~l~sg~~dg-----~I~iwd~~~~  416 (485)
                      ++...+...++|+.||     +|..||..+.
T Consensus       518 ~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  518 VVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EEEECCEEEEEecccCccccceeEEcCCCCC
Confidence            2333333777787775     4566665543

>PRK10115 protease 2; Provisional

Probab=97.38  E-value=0.29  Score=52.43  Aligned_cols=194  Identities=11%  Similarity=0.125  Sum_probs=107.8

Q ss_pred             cCEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC------CcEEEE
Q 011457          218 EQVRGLAVSSKHTYMFSAG-----DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD------SVCRVW  286 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~-----~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d------g~i~iw  286 (485)
                      -.+..+.|+|++++|+.+.     +...|++.|+.+++.+...-....  ..++|.+|++.|+....+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3466788999999888653     234788999988864322211211  569999998866655432      368888


Q ss_pred             ECCCC--ceEEEeccCCccEE-EEEEcCCCCEEEEEeC---CCCEEEEECC--CCeEEeEeccCCCceEEEEECCCCCEE
Q 011457          287 DIRTK--MQIFALAGHDNTVC-SVFTRPTDPQVVTGSH---DSTIKFWDLR--YGKTMLTLTHHKKSVRAMALHPTEDCF  358 (485)
Q Consensus       287 d~~~~--~~~~~~~~~~~~v~-~l~~~~~~~~l~s~s~---dg~I~iwd~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l  358 (485)
                      ++.++  +....+........ .+..+.++.+++..+.   ++.+.+++..  .+.....+.........+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            88877  33334433233333 3344447777665443   3568888853  3332222222223223332 3334444


Q ss_pred             EEEcCC--C--EEEEECCCCceeeeeccC-CcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          359 ASASAE--N--IKKFNLPKGEFLHNMLSQ-QKTIINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       359 ~~~~~~--~--i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      +....+  +  +...++........+... ....+..+.+..+.++++...+|.-+++-+.
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEc
Confidence            444332  2  544555421222333333 2347888888866577777778776665443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.37  E-value=0.068  Score=57.31  Aligned_cols=232  Identities=14%  Similarity=0.117  Sum_probs=126.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEecccCCc--------eEEEEEec----------------CCCEEEEEECCCcEE
Q 011457          229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG--------VYCLGLHP----------------TIDILLTGGRDSVCR  284 (485)
Q Consensus       229 ~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~--------v~~l~~~~----------------~~~~l~sg~~dg~i~  284 (485)
                      +..|+.++.++.|...|..+|+.+.++......        ...+++..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777888899999999999998887532211        11233321                234788899999999


Q ss_pred             EEECCCCceEEEeccCCccEE-------------EEEEcC--CCCEEEEEeC----------CCCEEEEECCCCeEEeEe
Q 011457          285 VWDIRTKMQIFALAGHDNTVC-------------SVFTRP--TDPQVVTGSH----------DSTIKFWDLRYGKTMLTL  339 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~v~-------------~l~~~~--~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~  339 (485)
                      -.|.++++.+..+.. .+.|.             .+.-.|  .+..+++|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999999987642 22110             011111  1346666643          688999999999998887


Q ss_pred             ccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 011457          340 THHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~  417 (485)
                      ..-......  ..+.+.....++.+.  ...+|.+.+....-.  +.... .  .+..+.........+.|.-.|.++|+
T Consensus       353 ~~g~p~~~~--~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt--Gn~~p-d--~~g~~r~~~~n~y~~slvALD~~TGk  425 (764)
T TIGR03074       353 DPGNPDPTA--PPAPGETYTRNTPNSWSVASYDEKLGLVYLPM--GNQTP-D--QWGGDRTPADEKYSSSLVALDATTGK  425 (764)
T ss_pred             ecCCCCccc--CCCCCCEeccCCCCccCceEEcCCCCeEEEeC--CCccc-c--ccCCccccCcccccceEEEEeCCCCc
Confidence            532111111  012333333333332  445555555433221  00000 0  00000000111224567777777777


Q ss_pred             ccccceeeeccC-CCCCCccEEEEEEcc-CCC---EEEEEECCCcEEEecCCCCCC
Q 011457          418 NFQQAQTIVQPG-SLDSEAGIYALSYDV-TGS---RLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       418 ~~~~~~~~~~~~-~~~~~~~V~~l~~s~-~g~---~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      ....++...+.. ..+......-+.+.. +|+   .++.++.+|.+.+.|-.+++.
T Consensus       426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            766655422110 001111111122222 553   788899999999999888764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=0.12  Score=47.18  Aligned_cols=230  Identities=14%  Similarity=0.123  Sum_probs=135.4

Q ss_pred             EEEEcCCCC-EEEEEeCCC-cEEEEECCCCeeEEEecccCCc--eEEEEEecCCCEEEEEECC-----CcEEEEECCCC-
Q 011457          222 GLAVSSKHT-YMFSAGDDK-QVKCWDLEQNKVIRSYHGHLSG--VYCLGLHPTIDILLTGGRD-----SVCRVWDIRTK-  291 (485)
Q Consensus       222 ~l~~s~~~~-~l~s~~~dg-~V~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~-  291 (485)
                      .++|+|.-. -++.+-.-| ...++|..+.+....+....+.  .-.=.|+|||.+|+..-.|     |.|-|||.+.+ 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            456666433 233333323 3567888777665554321111  1123589999988876543     78999999854 


Q ss_pred             ceEEEeccCCccEEEEEEcCCCCEEEEEeC------------------CCCEEEEECCCCeEEeEec----cCCCceEEE
Q 011457          292 MQIFALAGHDNTVCSVFTRPTDPQVVTGSH------------------DSTIKFWDLRYGKTMLTLT----HHKKSVRAM  349 (485)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~------------------dg~I~iwd~~~~~~~~~~~----~~~~~v~~l  349 (485)
                      +.+-.+..|.-.-..+.+.+||+.++.+..                  .-++.+.|..+|..+....    .+.-+|+.+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            345667777777788899999998887532                  1134445555555544322    234579999


Q ss_pred             EECCCCCEEEEEcCCC------EEEEECCCCceeeeeccC------CcccEEEEEeCCCC-eE-EEEeCCCcEEEEeCCC
Q 011457          350 ALHPTEDCFASASAEN------IKKFNLPKGEFLHNMLSQ------QKTIINSMAVNEEG-VL-ATGGDNGSLWFWDWKS  415 (485)
Q Consensus       350 ~~~p~~~~l~~~~~~~------i~i~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~-~l-~sg~~dg~I~iwd~~~  415 (485)
                      +..+||..++.+-..+      -.+=....++.+.-+...      ....|-+++.+.+. ++ ++.-..+...+||..+
T Consensus       232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            9999999888764322      122222334333322111      12457788887654 44 4444556778999999


Q ss_pred             CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          416 GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      |.........          .+..++-  ...-++..+.+|.|.++.-
T Consensus       312 G~vv~~a~l~----------daaGva~--~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         312 GAVVSEAALP----------DAAGVAA--AKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             CcEEeccccc----------cccccee--ccCceEEecCCceEEeccc
Confidence            9876544321          1222332  3334666677898988843

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.0033  Score=66.60  Aligned_cols=101  Identities=16%  Similarity=0.237  Sum_probs=76.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCce-EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEE
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYC  264 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~  264 (485)
                      .+.+++.|+..|.|...|+...-. ...=..-.++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            466789999999999988754311 1111224579999999999999999999999999999999999888766655544


Q ss_pred             E---EEecCCCEEEEEECCCcEEEEEC
Q 011457          265 L---GLHPTIDILLTGGRDSVCRVWDI  288 (485)
Q Consensus       265 l---~~~~~~~~l~sg~~dg~i~iwd~  288 (485)
                      +   .+..++..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            4   34445667888888886  5654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.27  E-value=0.36  Score=51.44  Aligned_cols=284  Identities=11%  Similarity=0.094  Sum_probs=154.4

Q ss_pred             CcceEEEEEccCC------CEEEEEeCCCeEEEE-ECCCCceEEEE--c--ccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          175 LGWVRSVAFDHSN------TWFCTGSADRTIKIW-DVAKGTLKLTL--T--GHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       175 ~~~V~~l~~sp~~------~~l~tgs~dg~I~iw-d~~~~~~~~~~--~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      ...|.|+.++|-+      ++++.|..+..+.+- -+.+...+...  .  .-...|.-..|-.+..+|.++..||.+.-
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            3579999999742      278888877655443 33444433322  1  12344555666667889999999999887


Q ss_pred             EECCCCeeE--EE--ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-ccEEEEEEcCCCC-EEE
Q 011457          244 WDLEQNKVI--RS--YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-NTVCSVFTRPTDP-QVV  317 (485)
Q Consensus       244 wd~~~~~~~--~~--~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~-~l~  317 (485)
                      |.+..+...  ..  ..-...++.--.|+..+..-+.+..|.-..+|.-+..-....+.... ..++.+. ++..+ .++
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~-s~a~~d~l~  688 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFN-SDAYPDSLA  688 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccc-cccCCceEE
Confidence            766543322  11  12234556666676665555555666666667654332222222111 1111111 22222 344


Q ss_pred             EEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCC---------------CEEEEECCCCceeeee
Q 011457          318 TGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAE---------------NIKKFNLPKGEFLHNM  380 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---------------~i~i~d~~~~~~~~~~  380 (485)
                      ++ ..+.+++.-+..-..  ++++ .-....+.+++.+....+.+.+..               .++++|-++.+.+...
T Consensus       689 ~~-~~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h  766 (1096)
T KOG1897|consen  689 SA-NGGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH  766 (1096)
T ss_pred             Ee-cCCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence            43 456677776554322  2232 234456777777755544443321               1566676666655443


Q ss_pred             ccCCcc---cEEEEEeCCC-C-eEEEEe----------CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC
Q 011457          381 LSQQKT---IINSMAVNEE-G-VLATGG----------DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT  445 (485)
Q Consensus       381 ~~~~~~---~i~~~~~~~~-~-~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  445 (485)
                      ......   .+.++.|..| + ++++|+          ..|.|.+|.+..++.++.....      .-.+.+.++.. .+
T Consensus       767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~------~v~Gav~aL~~-fn  839 (1096)
T KOG1897|consen  767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET------VVKGAVYALVE-FN  839 (1096)
T ss_pred             cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee------eeccceeehhh-hC
Confidence            222222   2444456666 4 777776          3589999998875444443322      22445666543 34


Q ss_pred             CCEEEEEECCCcEEEecCCCCCCCC
Q 011457          446 GSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       446 g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      |++||.  -...|++|+........
T Consensus       840 gkllA~--In~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  840 GKLLAG--INQSVRLYEWTTERELR  862 (1096)
T ss_pred             CeEEEe--cCcEEEEEEccccceeh
Confidence            666654  45689999988775433

>PHA02713 hypothetical protein; Provisional

Probab=97.27  E-value=0.048  Score=56.89  Aligned_cols=217  Identities=8%  Similarity=0.101  Sum_probs=104.7

Q ss_pred             CcEEEEECCCCeeEE--EecccCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceEE--EeccCCccEEEEE
Q 011457          239 KQVKCWDLEQNKVIR--SYHGHLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQIF--ALAGHDNTVCSVF  308 (485)
Q Consensus       239 g~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~l~  308 (485)
                      ..+..||..+++...  .+...... .+++. -++.+++.||.+      ..+..||..+..-..  .+...........
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~  349 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV  349 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence            357788988775432  22111111 22232 256777788754      347788887654211  1111111122222


Q ss_pred             EcCCCCEEEEEeCCC-----CEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCC-----------------
Q 011457          309 TRPTDPQVVTGSHDS-----TIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAE-----------------  364 (485)
Q Consensus       309 ~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~-----------------  364 (485)
                        -++...+.|+.++     .+..||..+.+-..  .+.........+.+  ++..++.|+.+                 
T Consensus       350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        350 --IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             --ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccc
Confidence              2566777888764     47889987653221  22211111222222  56666666533                 


Q ss_pred             -------CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCC------CcEEEEeCCCCcccccceeeeccCCC
Q 011457          365 -------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDN------GSLWFWDWKSGHNFQQAQTIVQPGSL  431 (485)
Q Consensus       365 -------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~~~~~~~  431 (485)
                             .+..||..+++-...-.......-.+++...+.+.+.|+.+      ..+..||..+............    
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~----  501 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES----  501 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc----
Confidence                   26667766554321110001111122333334455556644      2467788776222222222111    


Q ss_pred             CCCccEEEEEEccCCCEEEEEECCC--cEEEecCCCCCC
Q 011457          432 DSEAGIYALSYDVTGSRLVTCEADK--TIKMWREDETAT  468 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~~~Dg--~I~iW~~~~~~~  468 (485)
                       .......+.+  +|...++||.||  ++..||..+..-
T Consensus       502 -~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        502 -RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             -ccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence             1111222333  578888999898  677777776653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.24  E-value=0.16  Score=46.86  Aligned_cols=160  Identities=10%  Similarity=0.173  Sum_probs=109.4

Q ss_pred             EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc-cCCceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK  291 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  291 (485)
                      +.+-...|.++.|+|+.+.|++......-.+|=..+|+.++++.- .-...-.+.+..++++.++--+++.+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            345556699999999999999998888888887788999988742 1233456788888888888888999999887755


Q ss_pred             ceEEEec---------cC-CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe---EeccC-------CCceEEEEE
Q 011457          292 MQIFALA---------GH-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML---TLTHH-------KKSVRAMAL  351 (485)
Q Consensus       292 ~~~~~~~---------~~-~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~---~~~~~-------~~~v~~l~~  351 (485)
                      ..+..+.         .+ +...-.++|.+.+..|+.+-+-.-+.||.........   ....+       -..|.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            3322211         12 5577889999999999998888888888766433111   11111       134677888


Q ss_pred             CCCCCEEEEEcC-CC-EEEEECC
Q 011457          352 HPTEDCFASASA-EN-IKKFNLP  372 (485)
Q Consensus       352 ~p~~~~l~~~~~-~~-i~i~d~~  372 (485)
                      ++....+.+-++ .. +...|..
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC
Confidence            876554444444 44 5555543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.20  E-value=0.061  Score=56.08  Aligned_cols=229  Identities=11%  Similarity=0.118  Sum_probs=120.3

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeeEEEecc-cCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceE
Q 011457          228 KHTYMFSAGDD------KQVKCWDLEQNKVIRSYHG-HLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQI  294 (485)
Q Consensus       228 ~~~~l~s~~~d------g~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~  294 (485)
                      .+.+++.||.+      ..+..||..+++......- ....-.++++.. +.+.++||.|      .++..||.++.+=.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCcee
Confidence            45566777766      4788999888754433221 222334455553 4788899998      35778888766522


Q ss_pred             E--EeccCCccEEEEEEcCCCCEEEEEeCCCC-----EEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          295 F--ALAGHDNTVCSVFTRPTDPQVVTGSHDST-----IKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       295 ~--~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-----I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      .  .+...........+  +|...++|+.||.     +-.||..+.+--..  +.......-...  -+|.+.++|+.++
T Consensus       363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDG  438 (571)
T ss_pred             ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCC
Confidence            1  11111112222222  5778889999874     77788776542221  111111111222  2566677666442


Q ss_pred             -------EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCc-----EEEEeCCCCcccccceeeeccCCCCC
Q 011457          366 -------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGS-----LWFWDWKSGHNFQQAQTIVQPGSLDS  433 (485)
Q Consensus       366 -------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~  433 (485)
                             +..||..++.-...-.-.....-..++.-.+.+.++||.||.     |..||..+.+-... ....     ..
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~-----~~  512 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMT-----SP  512 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCc-----cc
Confidence                   677887666533221111111222345555557788887763     67788766432211 1100     11


Q ss_pred             CccEEEEEEccCCCEEEEEECCC-----cEEEecCCCCCCC
Q 011457          434 EAGIYALSYDVTGSRLVTCEADK-----TIKMWREDETATP  469 (485)
Q Consensus       434 ~~~V~~l~~s~~g~~L~s~~~Dg-----~I~iW~~~~~~~~  469 (485)
                      ...+....+  ++...+.||.||     +|..||...+.-.
T Consensus       513 rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  513 RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCcee
Confidence            112222222  366778888876     5777877666543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.20  E-value=0.25  Score=47.93  Aligned_cols=242  Identities=13%  Similarity=0.054  Sum_probs=115.2

Q ss_pred             ECCCCceEEEEcccccCEEEE-----EEcCCCCEEEEEe-CC--CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE
Q 011457          203 DVAKGTLKLTLTGHIEQVRGL-----AVSSKHTYMFSAG-DD--KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL  274 (485)
Q Consensus       203 d~~~~~~~~~~~~h~~~V~~l-----~~s~~~~~l~s~~-~d--g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  274 (485)
                      |..+|..+..+......-..+     +|.++|+.|+.++ .|  ..+.+.|+.+++..+--.+-........++++.+.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            556777666665443333323     4567886555444 44  467777888887766554332323356677888888


Q ss_pred             EEEECCCcEEEEECCCCceEEEeccCCccEEEEEE--cCCCCEEEEEe----------------------CCCCEEEEEC
Q 011457          275 LTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFT--RPTDPQVVTGS----------------------HDSTIKFWDL  330 (485)
Q Consensus       275 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~s----------------------~dg~I~iwd~  330 (485)
                      +-...+..|+-.|+++++....+......+-...|  +.++..++-.-                      -...|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            77666778999999998765555545555544444  33455443211                      1234556677


Q ss_pred             CCCeEEeEeccCCCceEEEEECCCCCEE-EEEcCCC-----EEEEECCC-Cceeeeecc-CCcccEEEEEeCCCC--eEE
Q 011457          331 RYGKTMLTLTHHKKSVRAMALHPTEDCF-ASASAEN-----IKKFNLPK-GEFLHNMLS-QQKTIINSMAVNEEG--VLA  400 (485)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~~~~~~~-----i~i~d~~~-~~~~~~~~~-~~~~~i~~~~~~~~~--~l~  400 (485)
                      .+|+....+. ....+..+.|+|....+ +-|-.+.     -++|-+.+ +.....+.. .....+.-=.|.++|  +..
T Consensus       176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            7766544443 35567788999976544 4444432     36665543 333333322 223455666789998  333


Q ss_pred             EEe-C---CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457          401 TGG-D---NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD  455 (485)
Q Consensus       401 sg~-~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D  455 (485)
                      .+. .   +..|.-+|..+++......          ......+-.++||++++-=|.|
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~----------~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERRRLME----------MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EEEEEE----------E-SEEEEEE-TTSSEEEEEE--
T ss_pred             EeecCCCCceEEEeeCCCCCCceEEEe----------CCceeeeEEcCCCCEEEecCCC
Confidence            222 2   3357778888875532111          1124456667888887754444

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.18  E-value=0.00049  Score=60.37  Aligned_cols=141  Identities=11%  Similarity=0.102  Sum_probs=78.0

Q ss_pred             EEEEEeCCCCEEEEECCCCeEEeEe-ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEE
Q 011457          315 QVVTGSHDSTIKFWDLRYGKTMLTL-THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMA  392 (485)
Q Consensus       315 ~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~  392 (485)
                      .+...+.||.|+-++++.-+.-..- .-+....   ....-+..+++++.++ |.+|..................|.++.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            4556677888888887754321111 1111111   1112234555565555 888877632222222223333444444


Q ss_pred             eCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCC-ccEEEEEEccCCCEEEEE--ECCCcEEEecCCCC
Q 011457          393 VNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE-AGIYALSYDVTGSRLVTC--EADKTIKMWREDET  466 (485)
Q Consensus       393 ~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~L~s~--~~Dg~I~iW~~~~~  466 (485)
                      ..- ++ +..+++.||.|+.|++.-++.+.....        |+ ..+..+..+..+..|+.+  +.|..++.|++...
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~--------h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ--------HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeecc--------ccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            433 33 889999999999999987665544321        22 334444445556666666  67777777777653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.19  Score=45.99  Aligned_cols=229  Identities=12%  Similarity=0.112  Sum_probs=132.4

Q ss_pred             EEEEccCCC-EEEEEeCCC-eEEEEECCCCceEEEEcccccC--EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC-
Q 011457          180 SVAFDHSNT-WFCTGSADR-TIKIWDVAKGTLKLTLTGHIEQ--VRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQN-  249 (485)
Q Consensus       180 ~l~~sp~~~-~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~--V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~-  249 (485)
                      .|+|+|... -++.+-.-| ...++|.+..+...++...++.  --.=.|||+|.+|...-.|     |.|-|||...+ 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            466666433 344443334 3567888777666554322111  1123689999999876443     78999998754 


Q ss_pred             eeEEEecccCCceEEEEEecCCCEEEEEECC------------------CcEEEEECCCCceEEE--ec--cCCccEEEE
Q 011457          250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRD------------------SVCRVWDIRTKMQIFA--LA--GHDNTVCSV  307 (485)
Q Consensus       250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d------------------g~i~iwd~~~~~~~~~--~~--~~~~~v~~l  307 (485)
                      +.+..+..|.-....+.|.+||+.++.+...                  -++.+.|..++..+.+  +.  -+...|..+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            4567777888888899999999988876431                  1233333334433322  11  234567778


Q ss_pred             EEcCCCCEEEEEeCCCC-----EEEEECCCCeEEeEeccC-------CCceEEEEECCCCCEEEEEcCCC--EEEEECCC
Q 011457          308 FTRPTDPQVVTGSHDST-----IKFWDLRYGKTMLTLTHH-------KKSVRAMALHPTEDCFASASAEN--IKKFNLPK  373 (485)
Q Consensus       308 ~~~~~~~~l~s~s~dg~-----I~iwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~  373 (485)
                      ...+++..++-+-..|.     -.+=-.+.++.+.-+...       ..-|-+|+.+.+..+++..+-.+  ..+||..+
T Consensus       232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            88777765554433221     111111223333333221       12466788887777776666544  89999999


Q ss_pred             CceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457          374 GEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD  412 (485)
Q Consensus       374 ~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd  412 (485)
                      |..+..-...   ....+.....+ +++.+.+|.+.++.
T Consensus       312 G~vv~~a~l~---daaGva~~~~g-f~vssg~G~~~~~s  346 (366)
T COG3490         312 GAVVSEAALP---DAAGVAAAKGG-FAVSSGQGRIIFYS  346 (366)
T ss_pred             CcEEeccccc---ccccceeccCc-eEEecCCceEEecc
Confidence            9877553211   12233333443 55556678888874

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.15  E-value=0.2  Score=45.96  Aligned_cols=183  Identities=11%  Similarity=0.049  Sum_probs=118.3

Q ss_pred             ceEEEEEccCCCEEEEEeCCC--eEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          177 WVRSVAFDHSNTWFCTGSADR--TIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.+++......-. .---..++...+ ....-.-.++...+||..+.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence            356788877888888877766  7999999999876654322 122234444433 333444578999999999999998


Q ss_pred             EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC--C---ccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457          254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH--D---NTVCSVFTRPTDPQVVTGSHDSTIKFW  328 (485)
Q Consensus       254 ~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~l~~~~~~~~l~s~s~dg~I~iw  328 (485)
                      ++. ....=+.++  .+++.|+.......++++|..+.+....+.-.  .   ..++-+.+- +|...+=.-....|...
T Consensus       125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            886 345556666  46677888777889999999888777665422  2   234556665 56555555566778888


Q ss_pred             ECCCCeEEeEecc---------------CCCceEEEEECCCCCEEEEEcCC
Q 011457          329 DLRYGKTMLTLTH---------------HKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       329 d~~~~~~~~~~~~---------------~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      |..+|+.+..+..               ...-.+.|++.|....|...+..
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            9999988775521               12357899999887766665543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.008  Score=63.85  Aligned_cols=102  Identities=18%  Similarity=0.278  Sum_probs=76.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCee-EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEE
Q 011457          228 KHTYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS  306 (485)
Q Consensus       228 ~~~~l~s~~~dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  306 (485)
                      .+..++.|+..|.|...|...+-. ...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            445688888888998888765421 1111224578999999999999999999999999999999999888877666555


Q ss_pred             EE---EcCCCCEEEEEeCCCCEEEEECC
Q 011457          307 VF---TRPTDPQVVTGSHDSTIKFWDLR  331 (485)
Q Consensus       307 l~---~~~~~~~l~s~s~dg~I~iwd~~  331 (485)
                      +-   +..++..++++...|.  +|.+.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            43   3445557888877776  66553

>PRK10115 protease 2; Provisional

Probab=97.11  E-value=0.54  Score=50.38  Aligned_cols=235  Identities=12%  Similarity=0.075  Sum_probs=121.8

Q ss_pred             ceEEEEEccCCCEEEEEeCC-----CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 011457          177 WVRSVAFDHSNTWFCTGSAD-----RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD------KQVKCWD  245 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------g~V~iwd  245 (485)
                      .+..+.++|++++|+.+...     ..|++-|+.+++.+........  ..++|.++++.|+....+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            46678899999988866432     3689999988864322211211  469999998876655432      3688888


Q ss_pred             CCCC--eeEEEecccCCceE-EEEEecCCCEEEEEEC---CCcEEEEECC--CCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457          246 LEQN--KVIRSYHGHLSGVY-CLGLHPTIDILLTGGR---DSVCRVWDIR--TKMQIFALAGHDNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       246 ~~~~--~~~~~~~~h~~~v~-~l~~~~~~~~l~sg~~---dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~  317 (485)
                      +.++  +-...+........ .+..+.++++++..+.   ++.+.+++..  .+.....+.........+. +.. ..|.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly  283 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFY  283 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEE
Confidence            8877  33333433233333 2333447776655444   4578888853  3332222222222223332 223 3333


Q ss_pred             EEeCC----CCEEEEECCCCeEEeEeccC--CCceEEEEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccE
Q 011457          318 TGSHD----STIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       318 s~s~d----g~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      .-+..    ..|...++........+..+  ...|..+.+. .+.++++...++   +.+++...+. +..+.......+
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~  361 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYV  361 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceE
Confidence            33322    23444455421122233333  2367788887 334455555554   6666654333 333221222223


Q ss_pred             EEEEeC--CCC--eEEEEeC---CCcEEEEeCCCCc
Q 011457          389 NSMAVN--EEG--VLATGGD---NGSLWFWDWKSGH  417 (485)
Q Consensus       389 ~~~~~~--~~~--~l~sg~~---dg~I~iwd~~~~~  417 (485)
                      ..+..+  +++  ++++.++   -+.++.+|..+++
T Consensus       362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            333344  332  3333332   3788999988764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.11  E-value=0.2  Score=46.24  Aligned_cols=197  Identities=11%  Similarity=0.142  Sum_probs=129.6

Q ss_pred             ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 011457          172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK  250 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~  250 (485)
                      .|-...|.++.|+|+.+.|++......-.||=..+|+.+.++.-. -.....+.+..++++.++--.++.+.++.+..+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            355566999999999999988888888888877889988876421 2334567888888888887788888888776553


Q ss_pred             eEEEe----------cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE---EEeccC-------CccEEEEEEc
Q 011457          251 VIRSY----------HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI---FALAGH-------DNTVCSVFTR  310 (485)
Q Consensus       251 ~~~~~----------~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~-------~~~v~~l~~~  310 (485)
                      .+..+          ...+...-.++|.|....|+.+-.-.-+.||.+......   .....+       -..|.++.|+
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            22111          112566788999999998988888888888877633211   111111       2346777887


Q ss_pred             CC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCC---------CceEEEEECCCCCEEEEEcCCCEEEE
Q 011457          311 PT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---------KSVRAMALHPTEDCFASASAENIKKF  369 (485)
Q Consensus       311 ~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~~~~~~~i~i~  369 (485)
                      +. +.+++.+.+++.+.-.|.. |..+..+..+.         ..-..++..++|.+.+++-.+..+.|
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F  309 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRF  309 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceec
Confidence            64 4566666677777777765 44444332221         13445677777776666554444443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.99  E-value=0.0012  Score=58.01  Aligned_cols=138  Identities=16%  Similarity=0.200  Sum_probs=77.6

Q ss_pred             EEEEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE-ec-cCCccEEEEE
Q 011457          232 MFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA-LA-GHDNTVCSVF  308 (485)
Q Consensus       232 l~s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~-~~~~~v~~l~  308 (485)
                      +..-+.||.|+-+++..-+.. +.-.-+...   .....-+..+++|+.+|.|.+|.......... .. +.....+.+.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            444567888888877543221 111112222   11122345799999999999999873221111 11 1222333344


Q ss_pred             EcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-CceEEEEECCCCCEEEEE--cCCC-EEEEECC
Q 011457          309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-KSVRAMALHPTEDCFASA--SAEN-IKKFNLP  372 (485)
Q Consensus       309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~--~~~~-i~i~d~~  372 (485)
                      ...++.+..+++.||.|+.|++..++.+.....|. .++..+.....+.++..+  +.+. ++.|++.
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            44456688999999999999999888877766666 344444333344444443  3333 4555543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.96  E-value=0.19  Score=44.71  Aligned_cols=204  Identities=15%  Similarity=0.182  Sum_probs=108.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCC---CEEEEEECCCcEEEEECCC--CceEEEec-----
Q 011457          229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI---DILLTGGRDSVCRVWDIRT--KMQIFALA-----  298 (485)
Q Consensus       229 ~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~sg~~dg~i~iwd~~~--~~~~~~~~-----  298 (485)
                      +.++.+--..|.|.-||+++++..+.-- ....+.++.+--.+   .+.+.++..-.|.-||...  -....++.     
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d  105 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD  105 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence            3445555566778889998876544321 11123333332222   2333334444455566332  12222211     


Q ss_pred             cCCccEEEEEEcCCCCEEEEEeC-C---------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--E
Q 011457          299 GHDNTVCSVFTRPTDPQVVTGSH-D---------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--I  366 (485)
Q Consensus       299 ~~~~~v~~l~~~~~~~~l~s~s~-d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i  366 (485)
                      ........-..+|+|+++. |.. |         |.++.|-..  ..+..+...-.--+.++|+.+.+.|.....-+  |
T Consensus       106 ~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             HHhcccccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence            1234556667789998843 332 2         233333221  11112222222335688888887777665555  5


Q ss_pred             EEEE--CCCCce-----eeeecc---CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457          367 KKFN--LPKGEF-----LHNMLS---QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEA  435 (485)
Q Consensus       367 ~i~d--~~~~~~-----~~~~~~---~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  435 (485)
                      .-||  +++|..     +..+..   ........+++..+| +.++.-+.|+|...|..+|+.+.++..        ...
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl--------Pt~  254 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL--------PTP  254 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc--------CCC
Confidence            4466  666643     222211   111223345556677 666667778999999999999887764        255


Q ss_pred             cEEEEEEcc
Q 011457          436 GIYALSYDV  444 (485)
Q Consensus       436 ~V~~l~~s~  444 (485)
                      .|+++||--
T Consensus       255 qitsccFgG  263 (310)
T KOG4499|consen  255 QITSCCFGG  263 (310)
T ss_pred             ceEEEEecC
Confidence            699999963

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.96  E-value=0.11  Score=51.98  Aligned_cols=271  Identities=16%  Similarity=0.120  Sum_probs=146.0

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      ...|..+.++..|. +..|+.|| +..||..+++....-.... ..|..+..+-.+. |.+|+.+| |.+.+.+..+...
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence            45688888887775 66777777 6778877777665544333 5666666555554 67777766 7888777533322


Q ss_pred             Eecc-cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC--CccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457          254 SYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH--DNTVCSVFTRPTDPQVVTGSHDSTIKFWDL  330 (485)
Q Consensus       254 ~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~  330 (485)
                      -... ....|..+.-..+| .+-.|+.+|..+.---+.+-.....+.|  -+.|.++....+| .|-+++.+|.+++-+.
T Consensus       240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~~~~a  317 (671)
T COG3292         240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVRYLTA  317 (671)
T ss_pred             cCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCC-CEeeeccCceEEEecc
Confidence            2221 22334433333333 4667777765433322222222222222  2355666665555 5667777776665443


Q ss_pred             CCCeEEeEeccCCC-ceEEEEECC--CCCEEE-EEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCC
Q 011457          331 RYGKTMLTLTHHKK-SVRAMALHP--TEDCFA-SASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG  406 (485)
Q Consensus       331 ~~~~~~~~~~~~~~-~v~~l~~~p--~~~~l~-~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg  406 (485)
                      . ......+....+ .+-..+..|  .+..+- .-+.+-+.+-+-.+|..+.....-....|+...+...+.+-.|+...
T Consensus       318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~  396 (671)
T COG3292         318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQN  396 (671)
T ss_pred             h-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEeccc
Confidence            2 222222222111 111112222  111111 11111244445556666655555555677777777777777777776


Q ss_pred             cEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457          407 SLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM  460 (485)
Q Consensus       407 ~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i  460 (485)
                      -+..|+-++ +-.....       .......|..+.-+|+++ |..|+.+|.++.
T Consensus       397 GLsrl~n~n~~avlde~-------agl~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         397 GLSRLDNKNEWAVLDED-------AGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             chhhhccCCcccccccc-------cCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence            666676555 2111111       112356788888999998 778888886654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.94  E-value=0.46  Score=46.59  Aligned_cols=226  Identities=14%  Similarity=0.186  Sum_probs=108.2

Q ss_pred             CCCEEEEEe-CCCcEEEEECCC----CeeEEEecc---c----CCceEEEEEecCCCEEEEEEC------CCcEEEEECC
Q 011457          228 KHTYMFSAG-DDKQVKCWDLEQ----NKVIRSYHG---H----LSGVYCLGLHPTIDILLTGGR------DSVCRVWDIR  289 (485)
Q Consensus       228 ~~~~l~s~~-~dg~V~iwd~~~----~~~~~~~~~---h----~~~v~~l~~~~~~~~l~sg~~------dg~i~iwd~~  289 (485)
                      +.++|+..+ .++.|.|.|+.+    .+..+.+..   +    -.....+..-|+|++++++-.      -|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 778999999874    345555542   1    122334555678888887532      2468888888


Q ss_pred             CCceEEEeccC---CccEEEEEEcCCCCEEEEEeC--------------------CCCEEEEECCCCeEEeEeccCCC--
Q 011457          290 TKMQIFALAGH---DNTVCSVFTRPTDPQVVTGSH--------------------DSTIKFWDLRYGKTMLTLTHHKK--  344 (485)
Q Consensus       290 ~~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~s~--------------------dg~I~iwd~~~~~~~~~~~~~~~--  344 (485)
                      +.+........   ...-..+.|.|..+.+++...                    ..++.+||+.+.+.++++.....  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            87776665532   234467788888888887642                    35799999999999998876543  


Q ss_pred             ceEEEEEC--CCCCEEEEEcC--CCEEEEEC-CCCceee----eecc---------CC-------cccEEEEEeCCCC-e
Q 011457          345 SVRAMALH--PTEDCFASASA--ENIKKFNL-PKGEFLH----NMLS---------QQ-------KTIINSMAVNEEG-V  398 (485)
Q Consensus       345 ~v~~l~~~--p~~~~l~~~~~--~~i~i~d~-~~~~~~~----~~~~---------~~-------~~~i~~~~~~~~~-~  398 (485)
                      ....+.|.  |+..+=++++.  .+|..|.- ..++-..    .+..         .-       ...|+.+.+|-|. +
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            34456664  44443333332  23544433 3333211    1100         00       2457888899888 4


Q ss_pred             E-EEEeCCCcEEEEeCCCCcccccceeeeccCCC-----------CCCccEEEEEEccCCCEEEEEE
Q 011457          399 L-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL-----------DSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       399 l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      | ++.-..|.|+.||+..-...........-+..           .-.++..-+..|.||++|....
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            4 55557899999999876554433322211111           1123456688899999988664

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.78  E-value=1  Score=48.24  Aligned_cols=261  Identities=9%  Similarity=0.092  Sum_probs=155.1

Q ss_pred             CeEEEEECCCCce--EEEEcccccCEEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCCeeEEEecc-cC
Q 011457          197 RTIKIWDVAKGTL--KLTLTGHIEQVRGLAVSSKHTYMFSAGDD--------------KQVKCWDLEQNKVIRSYHG-HL  259 (485)
Q Consensus       197 g~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--------------g~V~iwd~~~~~~~~~~~~-h~  259 (485)
                      +.+++..+..-+.  +.++. -....+.+++.+....+++.+.-              ..++++|-.+-+.+...+- ..
T Consensus       693 ~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~  771 (1096)
T KOG1897|consen  693 GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERN  771 (1096)
T ss_pred             CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccccc
Confidence            4455555443322  12222 22455677777655444444321              2466666666555443321 11


Q ss_pred             C---ceEEEEEecC-CCEEEEEEC----------CCcEEEEECCCCceEEEecc--CCccEEEEEEcCCCCEEEEEeCCC
Q 011457          260 S---GVYCLGLHPT-IDILLTGGR----------DSVCRVWDIRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDS  323 (485)
Q Consensus       260 ~---~v~~l~~~~~-~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg  323 (485)
                      .   .+.++.|..| +.++++|..          .|.|.+|.+.....+.....  -.+.+.++..- +|++++  +-+.
T Consensus       772 E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA--~In~  848 (1096)
T KOG1897|consen  772 ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA--GINQ  848 (1096)
T ss_pred             ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE--ecCc
Confidence            2   3445558887 667777754          47888888877444433322  23455555432 455554  4567


Q ss_pred             CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEE
Q 011457          324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA  400 (485)
Q Consensus       324 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  400 (485)
                      .|++|++.+.+.++.-..+..++..+.+.-.|..++++.--+   +..|+-..|.+...-..-+..+..++.+-.+..++
T Consensus       849 ~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl  928 (1096)
T KOG1897|consen  849 SVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL  928 (1096)
T ss_pred             EEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE
Confidence            899999999988887778888999999999999999887655   55566666666655455566778888888777778


Q ss_pred             EEeCCCcEEEEeCCCCcccccceee----------eccCCCCCCccEEEE--EEccCCCEEEEEECCCcEEEe
Q 011457          401 TGGDNGSLWFWDWKSGHNFQQAQTI----------VQPGSLDSEAGIYAL--SYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       401 sg~~dg~I~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~V~~l--~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      .+..+|.+.+....+......-...          .....+.|..-|..+  .-+|-+..+..|..+|.|-+-
T Consensus       929 gae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  929 GAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             eecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence            8888899888766532111110000          001112233334431  234555668888888888654

>PHA03098 kelch-like protein; Provisional

Probab=96.62  E-value=0.098  Score=54.53  Aligned_cols=184  Identities=10%  Similarity=0.108  Sum_probs=88.4

Q ss_pred             cCCCEEEEEeCCC------eEEEEECCCCceEEEE--cccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCee
Q 011457          185 HSNTWFCTGSADR------TIKIWDVAKGTLKLTL--TGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQNKV  251 (485)
Q Consensus       185 p~~~~l~tgs~dg------~I~iwd~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~~~  251 (485)
                      .++..++.||.++      .+..||..+.+....-  .........+.  -++..++.||.+     ..+..||..+++.
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3567777777542      5778888776543211  11111112222  256777777765     3577888877654


Q ss_pred             EEEecc-cCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceEE--EeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457          252 IRSYHG-HLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGSHD  322 (485)
Q Consensus       252 ~~~~~~-h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s~d  322 (485)
                      ...-.. +...-.+++ .-++.+.+.||.+      ..+..||..+.+-..  .+.........+.  .++..++.|+.+
T Consensus       371 ~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  447 (534)
T PHA03098        371 REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGIS  447 (534)
T ss_pred             eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCcc
Confidence            332110 111111222 2356677777742      357889987643211  1111111112222  245566666643


Q ss_pred             C--------CEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCC------CEEEEECCCCc
Q 011457          323 S--------TIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAE------NIKKFNLPKGE  375 (485)
Q Consensus       323 g--------~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~  375 (485)
                      +        .+.+||..+++-..  .+.........+.+  ++.+++.|+.+      .+.+||..+++
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            2        38888887654322  11111111112222  55666666543      26666665543

>PRK13684 Ycf48-like protein; Provisional

Probab=96.62  E-value=0.76  Score=44.61  Aligned_cols=283  Identities=12%  Similarity=0.102  Sum_probs=141.8

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC-CCceEEEEc----ccccCEEEEEEcCCCCEEEEEeC
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA-KGTLKLTLT----GHIEQVRGLAVSSKHTYMFSAGD  237 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~----~h~~~V~~l~~s~~~~~l~s~~~  237 (485)
                      .+|+....  .-...+.+|+|....+-+++|. +|.|  |... .|+.-....    .....+.++.|.++ ..++ ++.
T Consensus        35 ~~W~~~~~--~~~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~-~G~  107 (334)
T PRK13684         35 SPWQVIDL--PTEANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWI-VGQ  107 (334)
T ss_pred             CCcEEEec--CCCCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEE-eCC
Confidence            34544432  3356899999986666677664 4543  3222 222211111    12234677888654 3334 345


Q ss_pred             CCcEEEEECCCCeeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcCCC
Q 011457          238 DKQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTD  313 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~  313 (485)
                      .+.|..- -+.++.-..+.   ........+.....+..+ .++..|.|..=+ +.++.-..+. .....+..+.+.+++
T Consensus       108 ~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g  184 (334)
T PRK13684        108 PSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG  184 (334)
T ss_pred             CceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC
Confidence            5544332 22222211111   011112222222222333 334444432221 2232222222 234578889999887


Q ss_pred             CEEEEEeCCCCEEEE-ECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCCCEEEE-ECCCCceeeeeccC---Cccc
Q 011457          314 PQVVTGSHDSTIKFW-DLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAENIKKF-NLPKGEFLHNMLSQ---QKTI  387 (485)
Q Consensus       314 ~~l~s~s~dg~I~iw-d~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~-d~~~~~~~~~~~~~---~~~~  387 (485)
                      .+++++ ..|.+..- | ..++.-.. .......+.++.+.+++..++++.. +..++ ....|..-......   ....
T Consensus       185 ~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G~sW~~~~~~~~~~~~~  261 (334)
T PRK13684        185 KYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDLESWSKPIIPEITNGYG  261 (334)
T ss_pred             eEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCCCccccccCCccccccc
Confidence            665554 45655432 2 12222222 2234567899999999998777655 43344 34444332221111   2234


Q ss_pred             EEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          388 INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       388 i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      +..+.+.+++.+++++.+|.|. .....|+.........     .-....+.+.|..+++.++ .+..|.|.-|+-..
T Consensus       262 l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~~  332 (334)
T PRK13684        262 YLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGE-----EVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGSA  332 (334)
T ss_pred             eeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCC-----CCCcceEEEEEeCCCceEE-ECCCceEEEecCCC
Confidence            6778888888666677788665 4455565544432100     1123577888876665555 56789998887543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.55  E-value=1.3  Score=47.31  Aligned_cols=92  Identities=14%  Similarity=0.222  Sum_probs=51.3

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA  296 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  296 (485)
                      -.|..|.++++|.+|+..|..| |.|-.+... ..-..+.+....|.|-.+.-+..+                     + 
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~---------------------~-  141 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF---------------------F-  141 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh---------------------c-
Confidence            4688899999999999888765 444444321 111122222233333222211111                     1 


Q ss_pred             eccCCccEEEEEEcCC---CCEEEEEeCCCCEEEEECCC
Q 011457          297 LAGHDNTVCSVFTRPT---DPQVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~---~~~l~s~s~dg~I~iwd~~~  332 (485)
                      ...+...|..+.|+|.   +..|++-+.|+++|+||+..
T Consensus       142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            0123445667777775   46777777888888888764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=96.48  E-value=0.14  Score=53.31  Aligned_cols=182  Identities=13%  Similarity=0.097  Sum_probs=85.8

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCeeEEEecc--cCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCceE
Q 011457          228 KHTYMFSAGDDK------QVKCWDLEQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKMQI  294 (485)
Q Consensus       228 ~~~~l~s~~~dg------~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~  294 (485)
                      ++..++.||.++      .+..||..+++....-..  ...... ++ .-++.+++.||.+     ..+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455666666432      577888887765332111  111112 22 2256778888875     34777887765322


Q ss_pred             E--EeccCCccEEEEEEcCCCCEEEEEeCC------CCEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCC
Q 011457          295 F--ALAGHDNTVCSVFTRPTDPQVVTGSHD------STIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       295 ~--~~~~~~~~v~~l~~~~~~~~l~s~s~d------g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      .  .+....... +++ .-++..++.|+.+      ..+..||..+++-..  .+....... ++.. .++..++.|+..
T Consensus       372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~  447 (534)
T PHA03098        372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGIS  447 (534)
T ss_pred             eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCcc
Confidence            1  111111111 122 2246666777632      358889987654322  111111111 2222 245555655432


Q ss_pred             ---------CEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCC
Q 011457          365 ---------NIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSG  416 (485)
Q Consensus       365 ---------~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~  416 (485)
                               .+.+||..+++-...-. .........+.+ .+..++.|+.+     ..+.+||..+.
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                     27788877664322110 111111122222 33355666654     46778887654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.48  E-value=1  Score=44.45  Aligned_cols=193  Identities=12%  Similarity=0.119  Sum_probs=111.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccC-Cce
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL-SGV  262 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~-~~v  262 (485)
                      ++. +..+..||.|.-.|..+++.+.....-  ...+..-.+..+|+ |+.++.+|.+.++|..+|+.+..+.... ..+
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            444 555577888888888888866433322  12222223333665 7888889999999998999988887554 111


Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC---ccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEe
Q 011457          263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD---NTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTML  337 (485)
Q Consensus       263 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~  337 (485)
                      ..-..-.++ .++.++.++.+...|..+++.........   ..+..-.. .....++.+..  ++.+.-.|..+|....
T Consensus       146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w  223 (370)
T COG1520         146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKW  223 (370)
T ss_pred             ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEee
Confidence            111222233 44444478999999999998877755322   11111111 12335555655  6677778888887766


Q ss_pred             EeccC----CCce---EEE---EECCCCCEEEEEcCCCEEEEECCCCceeeeecc
Q 011457          338 TLTHH----KKSV---RAM---ALHPTEDCFASASAENIKKFNLPKGEFLHNMLS  382 (485)
Q Consensus       338 ~~~~~----~~~v---~~l---~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  382 (485)
                      .....    ...+   ..+   ...-++..+.......+..++..+++.+.++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            63211    1111   011   011123333333444488889999998887654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.48  E-value=0.42  Score=42.52  Aligned_cols=135  Identities=11%  Similarity=0.093  Sum_probs=85.0

Q ss_pred             ccCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCE-EEEEECCCcEEE
Q 011457          217 IEQVRGLAVSSKHTYMFSAGD----------DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI-LLTGGRDSVCRV  285 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~----------dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~sg~~dg~i~i  285 (485)
                      ....+.-..+|+|+| +.|..          .|.++.|-..  ..+..+...-.--..++|+.+.+. .++-+.+-+|.-
T Consensus       108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             hcccccCccCCCCce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence            345566677899998 44432          1334444321  111112212223356788877654 445566778877


Q ss_pred             EE--CCCC-----ceEEEecc----CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC
Q 011457          286 WD--IRTK-----MQIFALAG----HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT  354 (485)
Q Consensus       286 wd--~~~~-----~~~~~~~~----~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  354 (485)
                      ||  ..++     +.+..++.    ..-.--.+++..+|++.++.-..|+|...|..+|+.+.++......|++++|--.
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            87  4444     33444432    1112234455668888899999999999999999999999998999999999644

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.47  E-value=0.029  Score=60.16  Aligned_cols=143  Identities=13%  Similarity=0.035  Sum_probs=93.7

Q ss_pred             cCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeeEE-----Eec------ccCCceEEEEEecCC-CEEEEEECCCcE
Q 011457          218 EQVRGLAVSSKHTYMFSA--GDDKQVKCWDLEQNKVIR-----SYH------GHLSGVYCLGLHPTI-DILLTGGRDSVC  283 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~--~~dg~V~iwd~~~~~~~~-----~~~------~h~~~v~~l~~~~~~-~~l~sg~~dg~i  283 (485)
                      -.|..+...+|+...++.  +.+-.|..||+++-..-.     -+.      .......++.|+|.- ...+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345566666776654443  344589999987532211     111      122345688898863 356677889999


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---C-CCceEEEEECCCCCEEE
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---H-KKSVRAMALHPTEDCFA  359 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~-~~~v~~l~~~p~~~~l~  359 (485)
                      ++..+........-.......++++|+|.|+++++|-..|++.-|... ++....+..   . ...|.+|+|.....+++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            998876443332222356788999999999999999999999999754 332222221   1 35799999988777776


Q ss_pred             EE
Q 011457          360 SA  361 (485)
Q Consensus       360 ~~  361 (485)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            54

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.45  E-value=0.85  Score=43.25  Aligned_cols=280  Identities=12%  Similarity=0.144  Sum_probs=129.4

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC-CceEEEE--ccc---ccCEEEEEEcCCCCEEEEEeC
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-GTLKLTL--TGH---IEQVRGLAVSSKHTYMFSAGD  237 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-~~~~~~~--~~h---~~~V~~l~~s~~~~~l~s~~~  237 (485)
                      +|+.+..  .-...+..|.|.....-+++|. .+.|  +...+ |+.-...  ...   .-...++.|..+ ..++ ++.
T Consensus         7 ~W~~v~l--~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~   79 (302)
T PF14870_consen    7 SWQQVSL--PTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGE   79 (302)
T ss_dssp             -EEEEE---S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEE
T ss_pred             CcEEeec--CCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcC
Confidence            4555542  3456899999986666666664 4543  33322 2221111  111   123567777643 3344 445


Q ss_pred             CCcEEEEECCCCeeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECC-CCceEEE-eccCCccEEEEEEcCC
Q 011457          238 DKQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIFA-LAGHDNTVCSVFTRPT  312 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~l~~~~~  312 (485)
                      .+ +.+...+.++.=..+.   .-......+....++..++ .+..|.|  |-.. .++.-.. ...-...+..+..+++
T Consensus        80 ~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~d  155 (302)
T PF14870_consen   80 PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSD  155 (302)
T ss_dssp             TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEEEEE-S----EEEEEE-TT
T ss_pred             Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCC
Confidence            55 3444444454322221   1223334444444443333 4445543  3332 3333222 2344567888888999


Q ss_pred             CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC-CCceeee-ecc--CCcccE
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP-KGEFLHN-MLS--QQKTII  388 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~-~~~~~~~-~~~--~~~~~i  388 (485)
                      +.+++++.......-||--...-...-......|.+|.|.|++.+.+.+..+.++.=+.. ..+.... +..  .....+
T Consensus       156 G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~  235 (302)
T PF14870_consen  156 GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGI  235 (302)
T ss_dssp             S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-E
T ss_pred             CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceee
Confidence            998888766555567775432222223334678999999999988777644446665522 2222211 111  223347


Q ss_pred             EEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          389 NSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       389 ~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      ..+++.+++.+.+++..|.+ +.....|+..+......     .-...++.+.|....+-+ ..+.+|.|.-|
T Consensus       236 ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~-----~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~  301 (302)
T PF14870_consen  236 LDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGE-----NVPSNLYRIVFVNPDKGF-VLGQDGVLLRY  301 (302)
T ss_dssp             EEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGT-----TSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred             EEEEecCCCCEEEEeCCccE-EEeCCCCccceECcccc-----CCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence            88999998855556666654 45556666655443211     123458888887665444 45578887665

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.31  E-value=1.3  Score=43.90  Aligned_cols=81  Identities=7%  Similarity=0.067  Sum_probs=52.8

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCce-EEEEECCC-----------------CCEEEE-E
Q 011457          301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV-RAMALHPT-----------------EDCFAS-A  361 (485)
Q Consensus       301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v-~~l~~~p~-----------------~~~l~~-~  361 (485)
                      ...+.+++.+|++.+.++...-|.|.++|+..+..++.+++....- .-+.....                 ..+|+. +
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            3457889999999988888888999999999988877776644321 11111000                 112332 2


Q ss_pred             cCCC-EEEEECCCCceeeeec
Q 011457          362 SAEN-IKKFNLPKGEFLHNML  381 (485)
Q Consensus       362 ~~~~-i~i~d~~~~~~~~~~~  381 (485)
                      -..+ |.+|.++.|..+..+.
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEE
Confidence            3334 8889888887776653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.29  E-value=0.013  Score=38.31  Aligned_cols=36  Identities=28%  Similarity=0.464  Sum_probs=30.9

Q ss_pred             cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE
Q 011457          258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI  294 (485)
Q Consensus       258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  294 (485)
                      ....|.+++|+|..++|+.|+.+|.|.+|.+ +++.+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            3467999999999999999999999999998 45443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.22  E-value=0.018  Score=37.66  Aligned_cols=34  Identities=9%  Similarity=0.165  Sum_probs=29.9

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL  209 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~  209 (485)
                      ...|.+++|+|..++||.|+.||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 4543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.13  E-value=1.1  Score=41.46  Aligned_cols=145  Identities=11%  Similarity=-0.057  Sum_probs=90.3

Q ss_pred             ceEEEEEccCCCEEEEEe---CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeeE
Q 011457          177 WVRSVAFDHSNTWFCTGS---ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD-LEQNKVI  252 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd-~~~~~~~  252 (485)
                      .+.+.+++++++.+|...   ....++++..  +.....+. ....+..-.|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999877665   2345555553  33222221 223778889999987777666666677774 3333322


Q ss_pred             E-Eec--ccCCceEEEEEecCCCEEEEEE---CCCcEEEEECC---CC------ceEEEeccCCccEEEEEEcCCCCEEE
Q 011457          253 R-SYH--GHLSGVYCLGLHPTIDILLTGG---RDSVCRVWDIR---TK------MQIFALAGHDNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       253 ~-~~~--~h~~~v~~l~~~~~~~~l~sg~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~l~~~~~~~~l~  317 (485)
                      . ...  .....|..+.++|||..++...   .++.|.+--+.   .+      ............+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            1 121  1112899999999999777665   35677776553   22      11122223356889999999998777


Q ss_pred             EEeCCCC
Q 011457          318 TGSHDST  324 (485)
Q Consensus       318 s~s~dg~  324 (485)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            6655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.09  E-value=1.6  Score=42.97  Aligned_cols=193  Identities=13%  Similarity=0.076  Sum_probs=113.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEecccC--CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-ccEEE
Q 011457          230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHL--SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-NTVCS  306 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~  306 (485)
                      ..++.+..||.|.-.|.++++.+.....-.  ..+.+-.+..+|+ |+.++.+|.+..+|.++++.+....... ..+..
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            346666788999999999998776543221  2333333333555 8888999999999999999998887555 11222


Q ss_pred             EEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC---CceEEEEECCCCCEEEEEc--CCCEEEEECCCCceeeeec
Q 011457          307 VFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---KSVRAMALHPTEDCFASAS--AENIKKFNLPKGEFLHNML  381 (485)
Q Consensus       307 l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---~~v~~l~~~p~~~~l~~~~--~~~i~i~d~~~~~~~~~~~  381 (485)
                      -....+ ..++.++.+|.+...|..+++.........   ..+..--...++..++...  ...+.-+|..+|.......
T Consensus       148 ~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         148 PPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             CcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence            222223 345555578999999999888877654322   1111111122333333322  2237777887887776632


Q ss_pred             cCCccc---------EEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          382 SQQKTI---------INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       382 ~~~~~~---------i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      ......         +..-.+.-++.++.++.+|.+...|..+|+.+.....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            111111         1111111123456777888899999999888766554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.08  E-value=1.7  Score=43.16  Aligned_cols=268  Identities=11%  Similarity=0.107  Sum_probs=151.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCc-----eEEEEcccccCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCC--e---
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGT-----LKLTLTGHIEQVRGLAVSS-----KHTYMFSAGDDKQVKCWDLEQN--K---  250 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~V~iwd~~~~--~---  250 (485)
                      +.+.+++|+..|.++||+.....     ++...+ -..+|..+..-.     +...|++- .-..+.+|.+...  .   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCccc
Confidence            34689999999999999985443     222222 346777776532     22345553 5577888877211  1   


Q ss_pred             ----eEEEeccc--CCceEEEEEecC-----CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457          251 ----VIRSYHGH--LSGVYCLGLHPT-----IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       251 ----~~~~~~~h--~~~v~~l~~~~~-----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                          .+..+..|  ......+++-|-     .++|.+-+.||.+.+|+-+.......+.. ---...+.+.+....|+++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~  192 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA  192 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence                11222223  233444555442     35888899999999999765543344432 2233446677777889999


Q ss_pred             eCCCCEEEEECCC--------------------CeE---EeEeccCCCc---eEEEEECCCCCEEEEEcCCCEEEEECCC
Q 011457          320 SHDSTIKFWDLRY--------------------GKT---MLTLTHHKKS---VRAMALHPTEDCFASASAENIKKFNLPK  373 (485)
Q Consensus       320 s~dg~I~iwd~~~--------------------~~~---~~~~~~~~~~---v~~l~~~p~~~~l~~~~~~~i~i~d~~~  373 (485)
                      +.+..|..|....                    ++.   ..++.. ...   |..+.++.....+++-+..++..++. +
T Consensus       193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~  270 (418)
T PF14727_consen  193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKD-N  270 (418)
T ss_pred             cCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcC-C
Confidence            9888888886421                    010   111111 122   33344444556777777777777776 4


Q ss_pred             CceeeeeccCCcccEEEEE---e----CCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457          374 GEFLHNMLSQQKTIINSMA---V----NEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       374 ~~~~~~~~~~~~~~i~~~~---~----~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                      |.......-  +....|+.   .    .++.  .+++++.++.+.||.=  .+.....+..      ...-.|.-..|..
T Consensus       271 G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~------~~PVal~v~~~~~  340 (418)
T PF14727_consen  271 GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLP------HVPVALSVANFNG  340 (418)
T ss_pred             CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCC------CCCEEEEecccCC
Confidence            543332211  22222222   1    1222  5899999999999852  2222222210      0112244444444


Q ss_pred             CCCEEEEEECCCcEEEecCCCCCC
Q 011457          445 TGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       445 ~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      -...|++-+.+|.+.+-=+.+...
T Consensus       341 ~~G~IV~Ls~~G~L~v~YLGTdPs  364 (418)
T PF14727_consen  341 LKGLIVSLSDEGQLSVSYLGTDPS  364 (418)
T ss_pred             CCceEEEEcCCCcEEEEEeCCCCc
Confidence            456888999999999887766553

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.07  E-value=1.7  Score=42.90  Aligned_cols=144  Identities=11%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             cCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--eEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457          218 EQVRGLAVSSKHTYMFSAG-----------DDK-QVKCWDLEQ--NK--VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS  281 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~-----------~dg-~V~iwd~~~--~~--~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg  281 (485)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.........+++.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4556889999998766642           223 677776432  22  223443334456889999988  44445554


Q ss_pred             cEEEEECCCC-----c--eEE-Eecc----CCccEEEEEEcCCCCEEEEEeCC-------------------CCEEEEEC
Q 011457          282 VCRVWDIRTK-----M--QIF-ALAG----HDNTVCSVFTRPTDPQVVTGSHD-------------------STIKFWDL  330 (485)
Q Consensus       282 ~i~iwd~~~~-----~--~~~-~~~~----~~~~v~~l~~~~~~~~l~s~s~d-------------------g~I~iwd~  330 (485)
                      ..++.|....     +  .+. .+..    +......+.+.|+|.+.++-+..                   |.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3344454321     1  111 1221    13447789999999776654421                   44566666


Q ss_pred             CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457          331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      ..++. ..+...-.....++|+++|.++++-..+
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence            54443 2232223445789999999988775544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.04  E-value=1.6  Score=42.37  Aligned_cols=150  Identities=10%  Similarity=0.019  Sum_probs=87.2

Q ss_pred             CCceEEEEEecCCCEEEEEECCCcEEE-EECCCCceEEEe-ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457          259 LSGVYCLGLHPTIDILLTGGRDSVCRV-WDIRTKMQIFAL-AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM  336 (485)
Q Consensus       259 ~~~v~~l~~~~~~~~l~sg~~dg~i~i-wd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~  336 (485)
                      ...+.++.+.+++.++++ +..|.+.. +|- .++.-... ..-...+.++.+.++++.++++ ..|.+++=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEE-eCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            456889999998766554 45565443 221 12222222 2345678899999988876665 4676654333444432


Q ss_pred             eEecc----CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec--cCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457          337 LTLTH----HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML--SQQKTIINSMAVNEEGVLATGGDNGSLWF  410 (485)
Q Consensus       337 ~~~~~----~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~l~sg~~dg~I~i  410 (485)
                      .....    ....+.++.+.+++..++++.. +..+.....++.-....  .........+.+..++..+..+..|.|.-
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~-G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~  327 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGN-GTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR  327 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEcCC-CeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence            22211    2235788999998887666554 44445555555433322  12223566677666666666778899887


Q ss_pred             Ee
Q 011457          411 WD  412 (485)
Q Consensus       411 wd  412 (485)
                      |+
T Consensus       328 ~~  329 (334)
T PRK13684        328 YV  329 (334)
T ss_pred             ec
Confidence            75

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.00  E-value=1.5  Score=41.64  Aligned_cols=227  Identities=12%  Similarity=0.107  Sum_probs=110.0

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEE
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIR  253 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~  253 (485)
                      ..+|.|.. ...+++| ..+ +.+.....|+.-..+.   .-......+....++..++ ++..|.|..= .+.|+ -..
T Consensus        64 l~~I~f~~-~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~  138 (302)
T PF14870_consen   64 LNSISFDG-NEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQA  138 (302)
T ss_dssp             EEEEEEET-TEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEE
T ss_pred             EEEEEecC-CceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeE
Confidence            56777764 3444544 445 3344444454333322   1122333344433443333 3444544322 22232 222


Q ss_pred             EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC-CC
Q 011457          254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL-RY  332 (485)
Q Consensus       254 ~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~-~~  332 (485)
                      ....-.+.+..+.-+++|.+++++..-....-||--...-...-......|.++.|.|++.+.+++ ..|.|++=+. ..
T Consensus       139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred             cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence            234455778889999999988888766666778754322222222356789999999997665544 8888888772 22


Q ss_pred             CeEEeE----eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc--CCcccEEEEEeCCCCeEEEEeCCC
Q 011457          333 GKTMLT----LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS--QQKTIINSMAVNEEGVLATGGDNG  406 (485)
Q Consensus       333 ~~~~~~----~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~sg~~dg  406 (485)
                      .+.-..    +....-.+..++|.+++..+++++.+.+ +.....|+.-.+...  .-...+..+.|.++..-++-+.+|
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            222111    1122335899999999988887777653 444455554444332  224456677776656555566788


Q ss_pred             cEEEE
Q 011457          407 SLWFW  411 (485)
Q Consensus       407 ~I~iw  411 (485)
                      .|.-|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87655

>PHA02790 Kelch-like protein; Provisional

Probab=95.99  E-value=0.57  Score=48.04  Aligned_cols=141  Identities=9%  Similarity=-0.028  Sum_probs=68.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeeEEEecccCCce-EEEEEecCCCEEEEEECC--CcEEEEECCCCceEE--Ee
Q 011457          228 KHTYMFSAGDD-----KQVKCWDLEQNKVIRSYHGHLSGV-YCLGLHPTIDILLTGGRD--SVCRVWDIRTKMQIF--AL  297 (485)
Q Consensus       228 ~~~~l~s~~~d-----g~V~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~--~~  297 (485)
                      ++..+++||.+     ..+..||..+++....-.-..... .+++ .-++.+.+.||.+  ..+..||..+++-..  .+
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            44556667654     257788888776443221111111 1222 2356777788764  357788876543211  11


Q ss_pred             ccCCccEEEEEEcCCCCEEEEEeCCC---CEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCCCEEEEECC
Q 011457          298 AGHDNTVCSVFTRPTDPQVVTGSHDS---TIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAENIKKFNLP  372 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~  372 (485)
                      .........+.  -++...+.|+.++   .+..||.++.+-...  +....... +++ .-++..++.|+  ...+||..
T Consensus       350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG--~~e~ydp~  423 (480)
T PHA02790        350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR--NAEFYCES  423 (480)
T ss_pred             CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC--ceEEecCC
Confidence            11111112222  2566777777654   467888876543221  11111111 121 23456666653  35677776


Q ss_pred             CCc
Q 011457          373 KGE  375 (485)
Q Consensus       373 ~~~  375 (485)
                      +++
T Consensus       424 ~~~  426 (480)
T PHA02790        424 SNT  426 (480)
T ss_pred             CCc
Confidence            554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.80  E-value=1.6  Score=40.49  Aligned_cols=146  Identities=10%  Similarity=-0.010  Sum_probs=89.9

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE-CCCCceE-E
Q 011457          219 QVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD-IRTKMQI-F  295 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd-~~~~~~~-~  295 (485)
                      .+.+.+++++++.++... .++.-.+|-...+....... ....+..-.|.+++...+....+...+++. ..++... .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999998777655 23333344333343333332 223678889999987777766666667663 3333221 2


Q ss_pred             Eecc--CCccEEEEEEcCCCCEEEEEe---CCCCEEEEECC---CC------eEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457          296 ALAG--HDNTVCSVFTRPTDPQVVTGS---HDSTIKFWDLR---YG------KTMLTLTHHKKSVRAMALHPTEDCFASA  361 (485)
Q Consensus       296 ~~~~--~~~~v~~l~~~~~~~~l~s~s---~dg~I~iwd~~---~~------~~~~~~~~~~~~v~~l~~~p~~~~l~~~  361 (485)
                      .+..  ....|..+.++|||..++...   .++.|.+--+.   .+      ............+.++.|.+++.+++.+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence            2221  112899999999999887655   34666666432   22      1112222334678999999999988877


Q ss_pred             cCCC
Q 011457          362 SAEN  365 (485)
Q Consensus       362 ~~~~  365 (485)
                      ....
T Consensus       184 ~~~~  187 (253)
T PF10647_consen  184 RSAG  187 (253)
T ss_pred             CCCC
Confidence            6554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.76  E-value=0.34  Score=50.37  Aligned_cols=123  Identities=13%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEc--CCCCEEEEEeCCCc
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVS--SKHTYMFSAGDDKQ  240 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s--~~~~~l~s~~~dg~  240 (485)
                      .|.....+..-.....-+.-+.-++..++-+....+.|||...+.+...-. ...+.|.++.|.  |+++.+++.|..+.
T Consensus        18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~   97 (631)
T PF12234_consen   18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH   97 (631)
T ss_pred             EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence            455556665555566666666555544444445689999998887554433 356889999996  68899999999999


Q ss_pred             EEEEECC---------CCeeEEEe--cccC-CceEEEEEecCCCEEEEEECCCcEEEEEC
Q 011457          241 VKCWDLE---------QNKVIRSY--HGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDI  288 (485)
Q Consensus       241 V~iwd~~---------~~~~~~~~--~~h~-~~v~~l~~~~~~~~l~sg~~dg~i~iwd~  288 (485)
                      |.+|.-.         +...++.+  ..|+ .+|.+..|.++|.+++.+  ++.+.|+|-
T Consensus        98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen   98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            9999542         11233333  2333 578999999998655443  356888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=95.75  E-value=0.71  Score=47.32  Aligned_cols=142  Identities=8%  Similarity=-0.020  Sum_probs=70.7

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCCceEE--EEcccccCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEEEec
Q 011457          186 SNTWFCTGSADR-----TIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKHTYMFSAGDD--KQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       186 ~~~~l~tgs~dg-----~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~V~iwd~~~~~~~~~~~  256 (485)
                      ++..+++||.++     .+..||..+++...  .+........ ++ .-++...+.||.+  ..+..||..+++....-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            466677787643     57778877654322  1111111111 22 2366767777753  468889887665433211


Q ss_pred             ccCCceEEEEEecCCCEEEEEECCC---cEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457          257 GHLSGVYCLGLHPTIDILLTGGRDS---VCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR  331 (485)
Q Consensus       257 ~h~~~v~~l~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~  331 (485)
                      -...........-+|.+.+.||.++   .+..||.++.+=...  +.........+.  -++...+.|   |.+.+||..
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~  423 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCES  423 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecCC
Confidence            1111111111223567778887654   467888765432111  111111112222  245555555   457788887


Q ss_pred             CCe
Q 011457          332 YGK  334 (485)
Q Consensus       332 ~~~  334 (485)
                      +++
T Consensus       424 ~~~  426 (480)
T PHA02790        424 SNT  426 (480)
T ss_pred             CCc
Confidence            654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.71  E-value=0.0024  Score=62.13  Aligned_cols=241  Identities=13%  Similarity=0.112  Sum_probs=147.3

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~  253 (485)
                      ...-....|-+.+.-++.++.+..+..||- .++...... ..+....++|..++..++ .+-..+.+.+||+.+... +
T Consensus        34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-q  110 (615)
T KOG2247|consen   34 LVGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-Q  110 (615)
T ss_pred             ccccceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-H
Confidence            333344556776666888888889999984 444444443 345556788888776554 445678999999975422 2


Q ss_pred             Eec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 011457          254 SYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       254 ~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~  332 (485)
                      ++. +....-.-+.|++....++.|...|.+.|++..+.+.+...-.|...++++++.+.+ +.+.++.|..+.+-... 
T Consensus       111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qe-  188 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQE-  188 (615)
T ss_pred             HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhc-
Confidence            221 122222237788888889999999999999999887776665699999999999876 56666666554443322 


Q ss_pred             CeEEeEec--cCCCc-----eEEEEECCCCCEEEEEcCCCEEE----EECCCCceeeeeccCCcccEEEEEeCCCCeEEE
Q 011457          333 GKTMLTLT--HHKKS-----VRAMALHPTEDCFASASAENIKK----FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLAT  401 (485)
Q Consensus       333 ~~~~~~~~--~~~~~-----v~~l~~~p~~~~l~~~~~~~i~i----~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~s  401 (485)
                      ++......  +....     +..=.|..-|..+.+.-.+.+.+    ++-.++..-.. +....+.+.|+.|--||+|..
T Consensus       189 geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~-fq~~~gni~cyrwylDg~i~i  267 (615)
T KOG2247|consen  189 GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQ-FQEKYGNIHCYRWYLDGYILI  267 (615)
T ss_pred             cceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceE-eeecCCceeEEEEeccccccc
Confidence            11111111  00000     01112333344444333333111    11122221112 344567789999999999999


Q ss_pred             EeCCCcEEEEeCCCCccccc
Q 011457          402 GGDNGSLWFWDWKSGHNFQQ  421 (485)
Q Consensus       402 g~~dg~I~iwd~~~~~~~~~  421 (485)
                      |.+-|.|..-...+++....
T Consensus       268 gf~ag~iV~iS~h~aeLgae  287 (615)
T KOG2247|consen  268 GFDAGYIVSISAHNAELGAE  287 (615)
T ss_pred             cccceeEEEEeccchHHHHH
Confidence            99999999888887766443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.56  E-value=0.2  Score=49.44  Aligned_cols=142  Identities=14%  Similarity=0.212  Sum_probs=97.4

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-------EEEEEECCCcEEEEECCCCc-eEEEec
Q 011457          228 KHTYMF-SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-------ILLTGGRDSVCRVWDIRTKM-QIFALA  298 (485)
Q Consensus       228 ~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-------~l~sg~~dg~i~iwd~~~~~-~~~~~~  298 (485)
                      +..+|+ .|+.-..++-.|++.|+.+..+..|...  -+.|.|+.+       .-++|-.+..|.-.|.+-.. .+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            444444 4556667888899999999999877664  577887532       33456666666666766432 121111


Q ss_pred             ----cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC
Q 011457          299 ----GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP  372 (485)
Q Consensus       299 ----~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~  372 (485)
                          .......+..... ..++++++..|-|++||--..+....+.+....|..+..+.+|.++++.+...+.+.|++
T Consensus       556 sKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             ehhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence                1122333443333 349999999999999996544445566777889999999999999999999888888874

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.52  E-value=3.2  Score=42.02  Aligned_cols=290  Identities=9%  Similarity=0.034  Sum_probs=148.1

Q ss_pred             cceEEEEecCCcceEEEEEccC-----------CCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHS-----------NTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYM  232 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~-----------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l  232 (485)
                      ++-+..+.+-++.+..+.-.|.           +..|..|+.+| |++.+.+..+...-... ....|..+.-..+| .+
T Consensus       183 ~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~l  260 (671)
T COG3292         183 PDGLSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-EL  260 (671)
T ss_pred             CCcceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CE
Confidence            3444445555555554444443           23477787776 77777654222211111 23344444433343 46


Q ss_pred             EEEeCCCcEEEEECCCCeeEE-Eecc--cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-EEEE
Q 011457          233 FSAGDDKQVKCWDLEQNKVIR-SYHG--HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-CSVF  308 (485)
Q Consensus       233 ~s~~~dg~V~iwd~~~~~~~~-~~~~--h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~  308 (485)
                      -.|++.|..+. .+....... ..+.  .-+.|.++....+|+ |-+++.+|.+++-+-. ......+....+.+ ....
T Consensus       261 WiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~  337 (671)
T COG3292         261 WIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEA  337 (671)
T ss_pred             EEeecccceeE-ecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecch-hhheeeeecCCCchhhhhc
Confidence            66777664433 333322221 1121  234566666666665 6677777766654432 22211121111111 1111


Q ss_pred             EcC--CCCEEEEEeCCCCEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCCEEEEECCC-CceeeeeccCC
Q 011457          309 TRP--TDPQVVTGSHDSTIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAENIKKFNLPK-GEFLHNMLSQQ  384 (485)
Q Consensus       309 ~~~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~-~~~~~~~~~~~  384 (485)
                      ..|  .+..+--...-|.+.+-+-.++..+.... .....|+.+++..++...+....+++..|+..+ +..+.......
T Consensus       338 ~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~  417 (671)
T COG3292         338 VAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLP  417 (671)
T ss_pred             cCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCc
Confidence            111  12222222233344455555555544432 223567777777777777766677899998877 55554444555


Q ss_pred             cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          385 KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       385 ~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .+.+..+.-.+++-|..|+.+|-++. +.+.+.....+..   ..+......|..+.+.++|+.-+.. .+| |..|+-.
T Consensus       418 ss~V~aived~dnsLWIGTs~Glvk~-~pe~~~v~n~ln~---~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g-va~~~sq  491 (671)
T COG3292         418 SSEVSAIVEDPDNSLWIGTSGGLVKR-DPESGRVLNLLNP---GSHGLDGSRVEQLGLGPDGRLWLAA-GSG-VAAWESQ  491 (671)
T ss_pred             ccceeeeeecCCCCEEEeccCCeEec-Cccccchhccccc---ccCcCCcchhhhhccCCCCceEEEe-cce-eeeeccc
Confidence            67788888899988999999987664 2233222222211   1111233447788899998764433 333 5666544


Q ss_pred             C
Q 011457          465 E  465 (485)
Q Consensus       465 ~  465 (485)
                      .
T Consensus       492 ~  492 (671)
T COG3292         492 R  492 (671)
T ss_pred             c
Confidence            3

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=95.50  E-value=3.6  Score=42.50  Aligned_cols=252  Identities=13%  Similarity=0.192  Sum_probs=129.9

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCc--eEEEEccc-ccCEEEEEEcCCC-CEEEEEeC--CCcEEEEECCCCeeEEEecc
Q 011457          184 DHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGH-IEQVRGLAVSSKH-TYMFSAGD--DKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       184 sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h-~~~V~~l~~s~~~-~~l~s~~~--dg~V~iwd~~~~~~~~~~~~  257 (485)
                      ..++..++.+..+|.+....+....  .....-+. .....++.+..++ .+|+.|+.  |+.+..|....-+.+..+. 
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence            4467788889999998888775533  12222222 4555667776655 46777765  5566666655556666666 


Q ss_pred             cCCceEEEEEecC----CC------EEEEEE---CCCcEEEEECCCCce--EEEeccCCccEEEEEEcCC----CCEEEE
Q 011457          258 HLSGVYCLGLHPT----ID------ILLTGG---RDSVCRVWDIRTKMQ--IFALAGHDNTVCSVFTRPT----DPQVVT  318 (485)
Q Consensus       258 h~~~v~~l~~~~~----~~------~l~sg~---~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~----~~~l~s  318 (485)
                      .-++|..+++.+.    ..      .|++++   .+|.+++..-.-+-.  ........+ +..+..-+.    +.+|+.
T Consensus       298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~  376 (504)
T PF10433_consen  298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL  376 (504)
T ss_dssp             ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred             CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence            5678999888642    11      455554   367888874321111  111222222 444433332    457777


Q ss_pred             EeCCCCEEEEECC---CCeEEeEe-----ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEE
Q 011457          319 GSHDSTIKFWDLR---YGKTMLTL-----THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINS  390 (485)
Q Consensus       319 ~s~dg~I~iwd~~---~~~~~~~~-----~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~  390 (485)
                      +..+. -+++.+.   ..+.+..+     ......+.+-.+.  +..++=....+|++.+...++....+.......|.+
T Consensus       377 S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~  453 (504)
T PF10433_consen  377 SFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVA  453 (504)
T ss_dssp             EESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred             EcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence            66554 4455553   23333222     1112223333332  566666677778899988887777665556666666


Q ss_pred             EEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457          391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       391 ~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                      .+.+.. +++.+..+|.+..+.+.............   .......|.|+...|
T Consensus       454 a~~~~~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  454 ASINDP-QVLVALSGGELVYFELDDNKISVSDNDET---ILELDNEISCLSIEP  503 (504)
T ss_dssp             EEESSS-EEEEEE-TTEEEEEEEETTEEEEEEE-------EE-SS-EEEEE---
T ss_pred             EEECCC-EEEEEEeCCcEEEEEEECCceeeeeeccc---cccCCCceEEEEeCC
Confidence            666654 66666778889999887665432222110   011345677777655

...

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.32  E-value=3  Score=40.43  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=58.2

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCce---EEEE----cccccCEEEEEEcCC---CCEEEEEeC-C--------
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL---KLTL----TGHIEQVRGLAVSSK---HTYMFSAGD-D--------  238 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~---~~~~----~~h~~~V~~l~~s~~---~~~l~s~~~-d--------  238 (485)
                      -++|+|.|+|++|++ ...|.|++++ ..+..   +..+    .........++++|+   ..+|++... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            468999999987665 5699999999 55544   2222    223467899999994   334443332 1        


Q ss_pred             CcEEEEECCCC-------e-eEEEecc---cCCceEEEEEecCCCEEEEEECCCc
Q 011457          239 KQVKCWDLEQN-------K-VIRSYHG---HLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       239 g~V~iwd~~~~-------~-~~~~~~~---h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      ..|.-|.+..+       + ++..+..   ....-..|.|.|||.+.++.+..+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            24444544433       1 1112221   2234567999999977776666544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.11  E-value=1.1  Score=44.16  Aligned_cols=142  Identities=14%  Similarity=0.124  Sum_probs=79.5

Q ss_pred             cceEEEEEccCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457          176 GWVRSVAFDHSNTWFCTGS-----------ADR-TIKIWDVAK--GT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.........+++.+++  |+++....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4566899999999777643           223 677776543  32  223343334456889999888  44444544


Q ss_pred             cEEEEECCCC-------e-eEEEecc----cCCceEEEEEecCCCEEEEEECC-------------------CcEEEEEC
Q 011457          240 QVKCWDLEQN-------K-VIRSYHG----HLSGVYCLGLHPTIDILLTGGRD-------------------SVCRVWDI  288 (485)
Q Consensus       240 ~V~iwd~~~~-------~-~~~~~~~----h~~~v~~l~~~~~~~~l~sg~~d-------------------g~i~iwd~  288 (485)
                      ..++.|....       + .+..+..    +......+.|.|||.+.++-+..                   |.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334454321       1 1222322    23447789999999866655521                   34555555


Q ss_pred             CCCceEEEeccCCccEEEEEEcCCCCEEEEEe
Q 011457          289 RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      .+++......+ -.....++|++++.++++-.
T Consensus       172 dg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEEEEecC-cCCCccceECCCCCEEEEcc
Confidence            44433222222 23346788888887766533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.10  E-value=1.9  Score=43.81  Aligned_cols=150  Identities=13%  Similarity=0.138  Sum_probs=92.6

Q ss_pred             ccCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEecccCCceEEEEEecC----CCEEEEEECCCcEEEEECCC
Q 011457          217 IEQVRGLAVSSKHTYMFSAG--DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT----IDILLTGGRDSVCRVWDIRT  290 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~--~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~l~sg~~dg~i~iwd~~~  290 (485)
                      ..+|..++|....+.+++.-  .+|.+++=|   .+.+..|    ..|..+.|.|-    ...|++......|.||.+..
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            35788899974444444432  334444322   2344444    45889999985    33566667788999999852


Q ss_pred             -----CceEEEeccC-Cc----cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-EeEeccCCCceEEEEECCCCCEEE
Q 011457          291 -----KMQIFALAGH-DN----TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-MLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       291 -----~~~~~~~~~~-~~----~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                           .+.+.....+ ..    --..+.|+|....|++-.....-.+++++.... +..--...+-|.|.+|.+||..|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                 2222211111 11    124568999998888777666556666654332 222223467899999999999888


Q ss_pred             EEcCCC--EEEEECCC
Q 011457          360 SASAEN--IKKFNLPK  373 (485)
Q Consensus       360 ~~~~~~--i~i~d~~~  373 (485)
                      .+-...  -++||-..
T Consensus       172 VAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEeCCeEEEEEecCch
Confidence            776665  78888644

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.08  E-value=0.019  Score=59.90  Aligned_cols=162  Identities=15%  Similarity=0.206  Sum_probs=97.9

Q ss_pred             EecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECC--CCceEEE-----EcccccCEEEEEEcC---CCCEEEEEeCCC
Q 011457          171 ISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVA--KGTLKLT-----LTGHIEQVRGLAVSS---KHTYMFSAGDDK  239 (485)
Q Consensus       171 l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~--~~~~~~~-----~~~h~~~V~~l~~s~---~~~~l~s~~~dg  239 (485)
                      ++|..|.|-.+.|-. +...++  -.-|...||++.  .|+....     .......+.-+.|.|   +..++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            457788888888854 222222  223678899874  3433222     222334455566654   566777777888


Q ss_pred             cEEEEECCCCeeEEEecccCCceEEEE-----------EecCCCEEEEEECCCcEEEEECC-----CCceEEEeccCCc-
Q 011457          240 QVKCWDLEQNKVIRSYHGHLSGVYCLG-----------LHPTIDILLTGGRDSVCRVWDIR-----TKMQIFALAGHDN-  302 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~-----------~~~~~~~l~sg~~dg~i~iwd~~-----~~~~~~~~~~~~~-  302 (485)
                      .|++.+..+... ..+.+|...+..++           ++|||..++..+.||.+++|.+.     ...+.+..+.|.. 
T Consensus       206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~  284 (1283)
T KOG1916|consen  206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH  284 (1283)
T ss_pred             ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence            998887764332 33445666554443           68999999999999999888764     2334555556652 


Q ss_pred             -cEEEEEEcCCCC---------EEEEEeC-CCCEEEEECCCCeEE
Q 011457          303 -TVCSVFTRPTDP---------QVVTGSH-DSTIKFWDLRYGKTM  336 (485)
Q Consensus       303 -~v~~l~~~~~~~---------~l~s~s~-dg~I~iwd~~~~~~~  336 (485)
                       .|+.+ ++.+..         ++++++. +..+++|.....+|+
T Consensus       285 p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  285 PRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             Cceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence             33333 433221         3444443 456889987777665

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=3.2  Score=43.42  Aligned_cols=182  Identities=7%  Similarity=0.094  Sum_probs=95.6

Q ss_pred             CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE-e--ccCCccEEEEEEcCCCC
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA-L--AGHDNTVCSVFTRPTDP  314 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~--~~~~~~v~~l~~~~~~~  314 (485)
                      --.|+||++. |+.+..+.-....+-.+.|+.+. .|++...+|++++|++........ .  ......|..+.+..+| 
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-  139 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-  139 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence            3568888865 66666654444578899999774 577788999999999864322221 1  1223344444444455 


Q ss_pred             EEEEEeCCCCEEEEECCCCeEEeEecc---CCCceEEEEECCCCC---EEEEEc-CCCEEEEECCCCceeeeeccCCccc
Q 011457          315 QVVTGSHDSTIKFWDLRYGKTMLTLTH---HKKSVRAMALHPTED---CFASAS-AENIKKFNLPKGEFLHNMLSQQKTI  387 (485)
Q Consensus       315 ~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~~~p~~~---~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~  387 (485)
                       +++-..+|.+.+-+-.....+..+..   ..-+-.+-...+++.   .++... ..+..++-.................
T Consensus       140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~  218 (829)
T KOG2280|consen  140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSS  218 (829)
T ss_pred             -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCce
Confidence             33334455555543222222222221   111112222222211   111111 1111222222111111111222456


Q ss_pred             EEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccce
Q 011457          388 INSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       388 i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      +..+.++++. +|+--...|.|.+-+.+..+.+..+.
T Consensus       219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            7888899888 88889999999999888776666554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.90  E-value=4.5  Score=40.18  Aligned_cols=148  Identities=11%  Similarity=0.129  Sum_probs=84.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc-----e
Q 011457          304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE-----F  376 (485)
Q Consensus       304 v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~-----~  376 (485)
                      ...+...+++.+++++..-..++-||-  +..  ...-......+.++.+.+++.+++++..++ .++....+.     .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~-l~~S~d~G~~~~~~~  317 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGG-LYVSKGTGLTEEDFD  317 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeCCce-EEEecCCCCcccccc
Confidence            334455667766665543332333442  222  111122345688999999999888775555 444444443     1


Q ss_pred             eeeeccC-CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457          377 LHNMLSQ-QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD  455 (485)
Q Consensus       377 ~~~~~~~-~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D  455 (485)
                      ....... ....+..+.+.+++.++.++.+|.+.... ..|+........     ..-...++.+.|..+++.++ .+.+
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~-----~~~~~~ly~v~f~~~~~g~~-~G~~  390 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGA-----DNIAANLYSVKFFDDKKGFV-LGND  390 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEcccc-----CCCCcceeEEEEcCCCceEE-EeCC
Confidence            2222111 23458888899888777788888777663 555554443210     11234588999977765555 4578


Q ss_pred             CcEEEe
Q 011457          456 KTIKMW  461 (485)
Q Consensus       456 g~I~iW  461 (485)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            887665

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.89  E-value=0.41  Score=51.87  Aligned_cols=137  Identities=9%  Similarity=-0.004  Sum_probs=84.6

Q ss_pred             CceEEEEEecCCCEEEEE--ECCCcEEEEECCCCceEE-----Eec------cCCccEEEEEEcCCCC-EEEEEeCCCCE
Q 011457          260 SGVYCLGLHPTIDILLTG--GRDSVCRVWDIRTKMQIF-----ALA------GHDNTVCSVFTRPTDP-QVVTGSHDSTI  325 (485)
Q Consensus       260 ~~v~~l~~~~~~~~l~sg--~~dg~i~iwd~~~~~~~~-----~~~------~~~~~v~~l~~~~~~~-~l~s~s~dg~I  325 (485)
                      -.+..+...+|+...++.  +.+-.|..||+++...-.     -+.      .......++.|.|.-. ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345566666776544333  334478999997542211     111      1223456677877543 35677789999


Q ss_pred             EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc---CCcccEEEEEeCCCC
Q 011457          326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS---QQKTIINSMAVNEEG  397 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~  397 (485)
                      ++..+........--......++++|+|.|..++.+-.++ +..|. +.++....+..   .....|.++.|-...
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEee-cccceeecccCCCcCCCcceeEEEEecce
Confidence            9987765433322223456789999999999999998888 55553 44443333322   224678999998777

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.87  E-value=4.4  Score=40.01  Aligned_cols=190  Identities=10%  Similarity=0.086  Sum_probs=93.6

Q ss_pred             CCCEEEEEe-CCCeEEEEECCCC----ceEEEEcc---cc----cCEEEEEEcCCCCEEEEEe------CCCcEEEEECC
Q 011457          186 SNTWFCTGS-ADRTIKIWDVAKG----TLKLTLTG---HI----EQVRGLAVSSKHTYMFSAG------DDKQVKCWDLE  247 (485)
Q Consensus       186 ~~~~l~tgs-~dg~I~iwd~~~~----~~~~~~~~---h~----~~V~~l~~s~~~~~l~s~~------~dg~V~iwd~~  247 (485)
                      +.++|+..+ ..+.|+|.|+.+.    ++.+++..   +.    ..-..+..-|+|+.++++-      .-|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            455676666 6789999998743    44455542   11    2233444557888888763      22578889988


Q ss_pred             CCeeEEEeccc---CCceEEEEEecCCCEEEEEEC--------------------CCcEEEEECCCCceEEEeccCC--c
Q 011457          248 QNKVIRSYHGH---LSGVYCLGLHPTIDILLTGGR--------------------DSVCRVWDIRTKMQIFALAGHD--N  302 (485)
Q Consensus       248 ~~~~~~~~~~h---~~~v~~l~~~~~~~~l~sg~~--------------------dg~i~iwd~~~~~~~~~~~~~~--~  302 (485)
                      +.+....+...   ...-+.+-|.|..+.++|...                    ..++.+||+.+.+.++++.--.  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            88888777542   234577888998888888754                    3589999999999998887332  2


Q ss_pred             cEEEEEEcC--CCCEEEE-EeCCCCEEEEEC-CCCe----EEeEeccC-----------------CCceEEEEECCCCCE
Q 011457          303 TVCSVFTRP--TDPQVVT-GSHDSTIKFWDL-RYGK----TMLTLTHH-----------------KKSVRAMALHPTEDC  357 (485)
Q Consensus       303 ~v~~l~~~~--~~~~l~s-~s~dg~I~iwd~-~~~~----~~~~~~~~-----------------~~~v~~l~~~p~~~~  357 (485)
                      ....+.|..  +..+=++ +--.++|..|-- ..++    .+..+...                 ..-|+.|.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            344566644  3333332 233444554432 3332    12222111                 234789999999998


Q ss_pred             EEEEcCC-C-EEEEECCCCc
Q 011457          358 FASASAE-N-IKKFNLPKGE  375 (485)
Q Consensus       358 l~~~~~~-~-i~i~d~~~~~  375 (485)
                      |..++-. + ++.||+....
T Consensus       326 LYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTT
T ss_pred             EEEEcccCCcEEEEecCCCC
Confidence            8877654 3 9999997643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=1.4  Score=49.02  Aligned_cols=228  Identities=14%  Similarity=0.119  Sum_probs=104.8

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE-QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI  252 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~  252 (485)
                      -......++|+|...++|.|..+|.|+++-..--+.......... .+..+.+-...........+..+.+|.......+
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~  113 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV  113 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee
Confidence            334566789999999999999999999997543333222211110 1111222111112222333444555543322111


Q ss_pred             EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE----EEeccCCccEEEEEEcCCCCE-EEEEeCCCCEEE
Q 011457          253 RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI----FALAGHDNTVCSVFTRPTDPQ-VVTGSHDSTIKF  327 (485)
Q Consensus       253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg~I~i  327 (485)
                          .+...+++....+--.. +.| ..+.+++||..-....    ..+..+...+. ...++.-.. ......+  -.+
T Consensus       114 ----~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~--~~~  184 (993)
T KOG1983|consen  114 ----FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPY-ESLSPTLSIEGLVIDLD--TVL  184 (993)
T ss_pred             ----ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceecccccccccee-eeeccceeeeccccccc--cce
Confidence                12233444443333334 455 8888888887532111    11111110000 000000000 0000000  011


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG  406 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg  406 (485)
                      |-+....  ..+..+..++.+..+..............+..|+.........+...+...      +.++ .++++..||
T Consensus       185 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dg  256 (993)
T KOG1983|consen  185 ISLPDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDG  256 (993)
T ss_pred             eeccccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecC
Confidence            1111000  122223444555555545555555555555556554443333332222211      6666 899999999


Q ss_pred             cEEEEeCCCCcc
Q 011457          407 SLWFWDWKSGHN  418 (485)
Q Consensus       407 ~I~iwd~~~~~~  418 (485)
                      .+.+||...++.
T Consensus       257 s~~fWd~s~g~~  268 (993)
T KOG1983|consen  257 SYAFWDVSSGKL  268 (993)
T ss_pred             CEEeeecCCCce
Confidence            999999998855

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.76  E-value=2.9  Score=43.70  Aligned_cols=215  Identities=12%  Similarity=0.101  Sum_probs=107.7

Q ss_pred             CcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          175 LGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       175 ~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      -+...+|..+|..- -+.  +.--.|+|+++ +|.++..+.-....+-.+-|+.+.. |++...||++.+|++- |+.+.
T Consensus        43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie  117 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIE  117 (829)
T ss_pred             cCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhc
Confidence            34455666665321 111  33457999996 5666666554445888999997765 5666799999999985 44333


Q ss_pred             Ee----cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc---CCccEEEEEEcCCCC--E-EEEEe-CC
Q 011457          254 SY----HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG---HDNTVCSVFTRPTDP--Q-VVTGS-HD  322 (485)
Q Consensus       254 ~~----~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~--~-l~s~s-~d  322 (485)
                      .+    ......|..+.+..+|  ++.-..+|.+.+-+-........+..   ....-.|-...+++.  . ++-.. ..
T Consensus       118 ~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v  195 (829)
T KOG2280|consen  118 SNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAV  195 (829)
T ss_pred             ccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhh
Confidence            32    1122334444444455  33334445554443222222222221   111111111111111  1 11000 00


Q ss_pred             CCEEEEECCCC-eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457          323 STIKFWDLRYG-KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       323 g~I~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  397 (485)
                      + ..++..... .....+......+..+..+|+..+|+.-...+ +.+.+....+.+..+..........++|..+.
T Consensus       196 ~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  196 G-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             h-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            0 011111111 11222222346688899999999999877766 88887776666665543333333355554443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.67  E-value=2.9  Score=42.51  Aligned_cols=148  Identities=16%  Similarity=0.213  Sum_probs=89.7

Q ss_pred             CceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEEEeccCCccEEEEEEcCC----CCEEEEEeCCCCEEEEECCC-
Q 011457          260 SGVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT----DPQVVTGSHDSTIKFWDLRY-  332 (485)
Q Consensus       260 ~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~s~s~dg~I~iwd~~~-  332 (485)
                      .++..++|......+++.-  .+|.+++=|-   ..+    +.-..|..+.|.|-    .+.+++.-....|.+|.+-. 
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            4678888874444444432  2333333222   122    33456889999885    44677777888999998752 


Q ss_pred             ----CeEEeEeccCC-C----ceEEEEECCCCCEEEEEcCCCE-EEEECCCCceeeeeccCCcccEEEEEeCCCC--eEE
Q 011457          333 ----GKTMLTLTHHK-K----SVRAMALHPTEDCFASASAENI-KKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLA  400 (485)
Q Consensus       333 ----~~~~~~~~~~~-~----~v~~l~~~p~~~~l~~~~~~~i-~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~  400 (485)
                          ++.+.....+- .    --..+.|||....|++-....+ .+++........+......+.|.|.+|..||  +++
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence                23322221111 1    1245789999999988877775 4445544333333334667889999999999  444


Q ss_pred             EEeCCCcEEEEeCC
Q 011457          401 TGGDNGSLWFWDWK  414 (485)
Q Consensus       401 sg~~dg~I~iwd~~  414 (485)
                      +.++.=.-++||-.
T Consensus       173 AvGSsLHSyiWd~~  186 (671)
T PF15390_consen  173 AVGSSLHSYIWDSA  186 (671)
T ss_pred             EeCCeEEEEEecCc
Confidence            44555567788754

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.64  E-value=2  Score=34.95  Aligned_cols=116  Identities=12%  Similarity=0.128  Sum_probs=75.2

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCc--------eEEEEcccccCEEEEEEcC-----CCCEEEEEeCCCcEEEEEC
Q 011457          180 SVAFDHSNTWFCTGSADRTIKIWDVAKGT--------LKLTLTGHIEQVRGLAVSS-----KHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--------~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~V~iwd~  246 (485)
                      .-.|......|+.++.-|.|.|++.....        .+..+. -...|++|+-.+     +...|+.|+. ..+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            34566666788888888999999865332        223333 456777776543     2355666654 67999999


Q ss_pred             CCCeeEEEecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCCCceEEEec
Q 011457          247 EQNKVIRSYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQIFALA  298 (485)
Q Consensus       247 ~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~  298 (485)
                      +.+.-+..-. -.+.|.++.+-.-   ..-++..+.+..|.-||....+..++..
T Consensus        81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt  134 (136)
T PF14781_consen   81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT  134 (136)
T ss_pred             ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence            9887655433 4477888877431   2345555667788888877666555543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=1.8  Score=38.07  Aligned_cols=171  Identities=15%  Similarity=0.177  Sum_probs=94.1

Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEE-EECCCcEEEEECCCCceEEEeccCCccE
Q 011457          228 KHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLT-GGRDSVCRVWDIRTKMQIFALAGHDNTV  304 (485)
Q Consensus       228 ~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~v  304 (485)
                      ++.++.+.+.  ...|++||+.+++.+.+-.-....+..=-...-++.+.. .-.+|....+|.++.+++..+. .++.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            3455555543  347999999999887765422222221111122333332 2347888899999888777665 34444


Q ss_pred             EEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCc---eEEEEECCCCCEEEEEcC-CCEEEEECCCCceee
Q 011457          305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKS---VRAMALHPTEDCFASASA-ENIKKFNLPKGEFLH  378 (485)
Q Consensus       305 ~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~---v~~l~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~  378 (485)
                      ..++.  ++..|+.++...++++-|.++.....++.  ....+   ++.+.|- +|..++-.-. +.|...+..+|+.+.
T Consensus       134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            55554  45557776666778887776543333221  11222   2333333 4444443332 336666666666544


Q ss_pred             ee-----------ccCCcccEEEEEeCCCC--eEEEE
Q 011457          379 NM-----------LSQQKTIINSMAVNEEG--VLATG  402 (485)
Q Consensus       379 ~~-----------~~~~~~~i~~~~~~~~~--~l~sg  402 (485)
                      -+           ...+....+.+++.+++  ++++|
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            32           22344567888888877  44444

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.34  E-value=1.6  Score=45.55  Aligned_cols=113  Identities=12%  Similarity=0.096  Sum_probs=73.7

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEe--cCCCEEEEEECCCcEEEEECC----
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLH--PTIDILLTGGRDSVCRVWDIR----  289 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~sg~~dg~i~iwd~~----  289 (485)
                      .....-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.+++|.  |+++.+++.|....|.+|--.    
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            3444455555555544444455689999998876443332 347889999986  478889999999999998532    


Q ss_pred             -----CCceEEEe--ccCC-ccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457          290 -----TKMQIFAL--AGHD-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLR  331 (485)
Q Consensus       290 -----~~~~~~~~--~~~~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~  331 (485)
                           +...+..+  ..++ .+|.+..|.++|..++.+  ++.+.|+|-.
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence                 11223322  3344 578999999998555543  3578888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.32  E-value=0.89  Score=48.59  Aligned_cols=71  Identities=20%  Similarity=0.267  Sum_probs=47.1

Q ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEECCCC-----ce-------eee--------eccCCcccEEEEEeCCCC----eE
Q 011457          344 KSVRAMALHPTEDCFASASAENIKKFNLPKG-----EF-------LHN--------MLSQQKTIINSMAVNEEG----VL  399 (485)
Q Consensus       344 ~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~-----~~-------~~~--------~~~~~~~~i~~~~~~~~~----~l  399 (485)
                      -.|..|.++|+|.+++..+..++.+..++..     .+       ...        +.......|..+.|+|.+    .|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3688999999999999999999888887541     00       000        011233456667777653    66


Q ss_pred             EEEeCCCcEEEEeCC
Q 011457          400 ATGGDNGSLWFWDWK  414 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~  414 (485)
                      ++=++|+.+++||+.
T Consensus       165 ~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  165 VVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEecCCEEEEEecC
Confidence            666677777777764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.02  E-value=0.031  Score=58.49  Aligned_cols=156  Identities=17%  Similarity=0.200  Sum_probs=92.0

Q ss_pred             cCCcceEEEEEcc---CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEE-----------EcCCCCEEEEEeCC
Q 011457          173 GHLGWVRSVAFDH---SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA-----------VSSKHTYMFSAGDD  238 (485)
Q Consensus       173 ~H~~~V~~l~~sp---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~-----------~s~~~~~l~s~~~d  238 (485)
                      .-...+.-|.|.|   +.-+++.+-.++.|++.+..+... ..+.+|...+..++           ++|||..|+.++.|
T Consensus       178 p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d  256 (1283)
T KOG1916|consen  178 PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD  256 (1283)
T ss_pred             cCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence            3334445555554   667888888889988877654432 33455766655544           48999999999999


Q ss_pred             CcEEEEECC-----CCeeEEEecccC-CceEEEEEecCCC---------EEEEEE-CCCcEEEEECCCCceEEEeccCCc
Q 011457          239 KQVKCWDLE-----QNKVIRSYHGHL-SGVYCLGLHPTID---------ILLTGG-RDSVCRVWDIRTKMQIFALAGHDN  302 (485)
Q Consensus       239 g~V~iwd~~-----~~~~~~~~~~h~-~~v~~l~~~~~~~---------~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~  302 (485)
                      |.++.|.+.     .-+++..++.|. .+-.|.-|+.+..         ++++++ .+..+++|.....+|..  ...-.
T Consensus       257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll--~~~~d  334 (1283)
T KOG1916|consen  257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL--DKLID  334 (1283)
T ss_pred             CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhh--hhccc
Confidence            999888653     234556666676 3333333544321         344443 35568889877776652  11223


Q ss_pred             cEEEEEEcCCCC------------EEEEEeCCCCEEEEECCC
Q 011457          303 TVCSVFTRPTDP------------QVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       303 ~v~~l~~~~~~~------------~l~s~s~dg~I~iwd~~~  332 (485)
                      .|..+. -+++.            .++.-+-++.|.+|.-+.
T Consensus       335 ~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  335 GVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             ceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            333333 22221            234456678888886443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.00  E-value=1.9  Score=35.03  Aligned_cols=111  Identities=13%  Similarity=0.193  Sum_probs=70.7

Q ss_pred             EEEEcCCCCEEEEEeCCCCEEEEECCCCe--------EEeEeccCCCceEEEEECC-----CCCEEEEEcCCCEEEEECC
Q 011457          306 SVFTRPTDPQVVTGSHDSTIKFWDLRYGK--------TMLTLTHHKKSVRAMALHP-----TEDCFASASAENIKKFNLP  372 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~dg~I~iwd~~~~~--------~~~~~~~~~~~v~~l~~~p-----~~~~l~~~~~~~i~i~d~~  372 (485)
                      .-.|....+.|++++.-|.|.|++.....        .+..+ .-...|++|+-.+     +...|+.|+...+..||..
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence            34566677789999999999999876432        22333 3355677776543     4578999999999999998


Q ss_pred             CCceeeeeccCCcccEEEEEeC---C-CCeEEEEeCCCcEEEEeCCCCccc
Q 011457          373 KGEFLHNMLSQQKTIINSMAVN---E-EGVLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       373 ~~~~~~~~~~~~~~~i~~~~~~---~-~~~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      ++..+..  ..-...++++.+-   . ..-++..+.+..|.-||....+.+
T Consensus        82 ~N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   82 NNSDLFY--KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             cCchhhh--hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            8765433  2233445555542   1 223444444667777776654443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.83  E-value=5.8  Score=37.17  Aligned_cols=206  Identities=12%  Similarity=0.185  Sum_probs=118.7

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECC-------CCceEEEEcc-----cccCEEEEEEcCCCC------------EEEE
Q 011457          179 RSVAFDHSNTWFCTGSADRTIKIWDVA-------KGTLKLTLTG-----HIEQVRGLAVSSKHT------------YMFS  234 (485)
Q Consensus       179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~-----h~~~V~~l~~s~~~~------------~l~s  234 (485)
                      +.|+++|.+.+-++...-+...+||..       ...++.++..     .....+.+.|+....            .++.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            478999999888877778899999986       2233444432     224567777774332            2577


Q ss_pred             EeCCCcEEEEECCCCee-----EEEec-ccCCce-EEEEEecC--CCEEEEE-ECCCcEEEEECCCCceEE--Eecc---
Q 011457          235 AGDDKQVKCWDLEQNKV-----IRSYH-GHLSGV-YCLGLHPT--IDILLTG-GRDSVCRVWDIRTKMQIF--ALAG---  299 (485)
Q Consensus       235 ~~~dg~V~iwd~~~~~~-----~~~~~-~h~~~v-~~l~~~~~--~~~l~sg-~~dg~i~iwd~~~~~~~~--~~~~---  299 (485)
                      +++||+|.-|...-+..     ...+. +....| ..+++...  +++|+.+ -..++|.|||-.-.+...  .+..   
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i  185 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL  185 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence            78999999998532221     11221 112333 34555543  4555554 457899999854322110  0000   


Q ss_pred             -------------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--CCCceEEEEECC------CCCEE
Q 011457          300 -------------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--HKKSVRAMALHP------TEDCF  358 (485)
Q Consensus       300 -------------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p------~~~~l  358 (485)
                                   -.-.|+-..-.++...=+.|..-|.|-+||+. +..++.+..  .-..-..|+..|      .+.+|
T Consensus       186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL  264 (336)
T TIGR03118       186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALL  264 (336)
T ss_pred             CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence                         00011111112222222334445789999976 777776632  223456677655      45666


Q ss_pred             EEEcCCC-EEEEECCCCceeeeeccCCc
Q 011457          359 ASASAEN-IKKFNLPKGEFLHNMLSQQK  385 (485)
Q Consensus       359 ~~~~~~~-i~i~d~~~~~~~~~~~~~~~  385 (485)
                      +.--.|+ |..||..+++.+..+.....
T Consensus       265 VGNFGDG~InaFD~~sG~~~g~L~~~~G  292 (336)
T TIGR03118       265 VGNFGDGTINAYDPQSGAQLGQLLDPDN  292 (336)
T ss_pred             EeecCCceeEEecCCCCceeeeecCCCC
Confidence            6655555 99999999998877755443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.73  E-value=13  Score=40.73  Aligned_cols=114  Identities=8%  Similarity=0.055  Sum_probs=78.5

Q ss_pred             ccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCC----e-EEeEeccC----------CCceEEEEECCCCCEEEEEcCCC
Q 011457          302 NTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYG----K-TMLTLTHH----------KKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       302 ~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~----~-~~~~~~~~----------~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      .+...++|+| +...|++....|...|||+...    . ........          ...-..+.|.++...|+.++...
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~  225 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK  225 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence            4677889998 4568999999999999999211    1 11111111          12344788999999999999999


Q ss_pred             EEEEECCCCceee-eeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCC
Q 011457          366 IKKFNLPKGEFLH-NMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       366 i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~  416 (485)
                      +.++|+.+..... -........|..+.-++..  +++.-+ ...|...++...
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~  278 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS  278 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence            9999999887644 3334455778888888873  333333 357877887763

These proteins are found in fungi.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=93.58  E-value=7  Score=37.30  Aligned_cols=231  Identities=13%  Similarity=0.097  Sum_probs=112.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCC--CceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCee-----------
Q 011457          186 SNTWFCTGSADRTIKIWDVAK--GTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKV-----------  251 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~-----------  251 (485)
                      ++++|+.|+.+| +.+.++..  .+....+  +...|+++...+..+.|++-+ ....++.+++..-..           
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            336899999998 55555654  2333333  467899999998887776654 334499999843221           


Q ss_pred             ----EEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCC----ceEEEe---c-cCCccEEEEEEcCC--CCEE
Q 011457          252 ----IRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTK----MQIFAL---A-GHDNTVCSVFTRPT--DPQV  316 (485)
Q Consensus       252 ----~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~----~~~~~~---~-~~~~~v~~l~~~~~--~~~l  316 (485)
                          ....-.+......+.+.... ..++++....+|.++.....    .....+   . ....++..+..+++  ...+
T Consensus        89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (302)
T smart00036       89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI  168 (302)
T ss_pred             ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence                01111344433333333222 23445555666777644322    111110   0 01223333433333  5678


Q ss_pred             EEEeCCCCEEEEECCC--CeEEe-----EeccCC-CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccE
Q 011457          317 VTGSHDSTIKFWDLRY--GKTML-----TLTHHK-KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~--~~~~~-----~~~~~~-~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      ++|+..+...++++..  .....     ...... .++....+ +++. ++.+-++.....|.............-....
T Consensus       169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e-~Llc~~~~~v~Vn~~G~~~~r~~~l~w~~~p  246 (302)
T smart00036      169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDE-FLLCYDEFGVFVNLYGKRRSRNPILHWEFMP  246 (302)
T ss_pred             EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCe-EEEEECcEEEEEeCCCCccccceEEEcCCcc
Confidence            8887753344555432  11000     001111 23333333 3444 4444444444444432122111111223345


Q ss_pred             EEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccce
Q 011457          389 NSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       389 ~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      .++++.. .+|++-. +..|.++++.+++..+.+.
T Consensus       247 ~~~~~~~-pyll~~~-~~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      247 ESFAYHS-PYLLAFH-DNGIEIRSIKTGELLQELA  279 (302)
T ss_pred             cEEEEEC-CEEEEEc-CCcEEEEECCCCceEEEEe
Confidence            5666665 3555555 4569999999987665543

Unpublished observations.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.32  E-value=1.8  Score=43.01  Aligned_cols=137  Identities=12%  Similarity=0.152  Sum_probs=91.0

Q ss_pred             EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC--------CCEEEEEcCCCEEEEECCCCc-eeeee---ccCC
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT--------EDCFASASAENIKKFNLPKGE-FLHNM---LSQQ  384 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~--------~~~l~~~~~~~i~i~d~~~~~-~~~~~---~~~~  384 (485)
                      ..|.....++-.|+..|+.+.....+...  -+.|.|.        ...|+..+..+|...|-+-.. .+...   .-..
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t  561 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT  561 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence            34556667888899999999988877664  5677774        456777787788777765322 22111   1122


Q ss_pred             cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          385 KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       385 ~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      ....++.....+|++++++..|-|++||--.-.....+        .+-...|-.+..+.+|.++++.|.. .|.+-++.
T Consensus       562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal--------P~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL--------PGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             cccccccccccCceEEEecCCCceeeehhhcchhhhcC--------cccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            34456667777889999999999999995432211111        1345678889999999998877653 45565554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.25  E-value=5.1  Score=41.01  Aligned_cols=143  Identities=18%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc---eEEEEEecCC
Q 011457          195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG---VYCLGLHPTI  271 (485)
Q Consensus       195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~---v~~l~~~~~~  271 (485)
                      ..+...+.|. +|.....+.........+...++|.+++..+  ..+..+|+. |+.+..+......   =..+...|+|
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence            3456666773 4665555543222222266778998777655  789999986 6666655422211   1356678899


Q ss_pred             CEEEEEEC-------------CCcEEEEECCCCceEEEecc--CC-------------------------ccEEEEEEcC
Q 011457          272 DILLTGGR-------------DSVCRVWDIRTKMQIFALAG--HD-------------------------NTVCSVFTRP  311 (485)
Q Consensus       272 ~~l~sg~~-------------dg~i~iwd~~~~~~~~~~~~--~~-------------------------~~v~~l~~~~  311 (485)
                      ++|+.+..             .-.|..+| .+|+.+..+..  |-                         --+.++.+.+
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~  280 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP  280 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred             CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence            98888771             12355666 66666655321  10                         1368899988


Q ss_pred             CCCEEEEEeC-CCCEEEEECCCCeEEeEeccC
Q 011457          312 TDPQVVTGSH-DSTIKFWDLRYGKTMLTLTHH  342 (485)
Q Consensus       312 ~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~  342 (485)
                      .+..|++.+. -..|...|.++++....+-.+
T Consensus       281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            5455555554 458999998888887777554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.93  E-value=5.4  Score=42.21  Aligned_cols=142  Identities=12%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceE------EEEc----------------ccccCEEEEEEcC--CCCEEEEEeCCCcEE
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLK------LTLT----------------GHIEQVRGLAVSS--KHTYMFSAGDDKQVK  242 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~------~~~~----------------~h~~~V~~l~~s~--~~~~l~s~~~dg~V~  242 (485)
                      .++++++. .+.|.||+.......      ..+.                .....|+.|....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66677664 678999997543221      1110                0112355554443  456789999999999


Q ss_pred             EEECCC-------C----e---------eEEEecccCCceEEEEEe--cCCCEEEEEECCCcEEEEECCCC--ceEE-Ee
Q 011457          243 CWDLEQ-------N----K---------VIRSYHGHLSGVYCLGLH--PTIDILLTGGRDSVCRVWDIRTK--MQIF-AL  297 (485)
Q Consensus       243 iwd~~~-------~----~---------~~~~~~~h~~~v~~l~~~--~~~~~l~sg~~dg~i~iwd~~~~--~~~~-~~  297 (485)
                      +|.+++       .    +         +-..+. ....++.++++  ...++||+++....|.||-....  +... .-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            996521       0    0         111222 34578999999  77788888888888888765432  1111 11


Q ss_pred             ccCCccEEEEEEcCCC---C---EEEEEeCCCCEEEEEC
Q 011457          298 AGHDNTVCSVFTRPTD---P---QVVTGSHDSTIKFWDL  330 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~---~---~l~s~s~dg~I~iwd~  330 (485)
                      ..+...|.+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1256678888887643   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.81  E-value=8.8  Score=36.29  Aligned_cols=169  Identities=16%  Similarity=0.175  Sum_probs=94.4

Q ss_pred             cEEEEECCCCceEEEecc------CCccEEEEEEcCCC-----CEEEEEe-CCCCEEEEECCCCeEEeEeccC-------
Q 011457          282 VCRVWDIRTKMQIFALAG------HDNTVCSVFTRPTD-----PQVVTGS-HDSTIKFWDLRYGKTMLTLTHH-------  342 (485)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~~-----~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~-------  342 (485)
                      .|.+||+.+.+.++++.-      ..+.+..+.+....     .++..+. ..+-|.++|+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            688899999988777652      24567788777632     2443333 3467999999998765544321       


Q ss_pred             ------------CCceEEEEECC---CCCEEEEEcCCCEEEEECCC-----Cceee--------eeccCCcccEEEEEeC
Q 011457          343 ------------KKSVRAMALHP---TEDCFASASAENIKKFNLPK-----GEFLH--------NMLSQQKTIINSMAVN  394 (485)
Q Consensus       343 ------------~~~v~~l~~~p---~~~~l~~~~~~~i~i~d~~~-----~~~~~--------~~~~~~~~~i~~~~~~  394 (485)
                                  ...+..++.+|   ++++|.-..-.+..+|.+++     .....        +.+.........++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                        12356666655   66677766655545554422     11100        1111222356678888


Q ss_pred             CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc--CCCEEEEE
Q 011457          395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV--TGSRLVTC  452 (485)
Q Consensus       395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~L~s~  452 (485)
                      ++| ++++--..+.|..|+..............+..  ..-..+.++.+++  +|.+.+..
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~--~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP--RTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C--C-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC--ceeeccceeeeccccCceEEEEE
Confidence            888 66666778899999987633322332222211  1124577888888  77665554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.78  E-value=0.015  Score=56.83  Aligned_cols=142  Identities=11%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE-EEEECCCcEEEEECCCCceEEEecc
Q 011457          221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL-LTGGRDSVCRVWDIRTKMQIFALAG  299 (485)
Q Consensus       221 ~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~  299 (485)
                      ....|-+.+.-++.++.+..|..||-. ++...... ..+....++|..+++.+ +.+-..+.+.+||+.+......-.+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            345677777778888899999999844 45444443 44556678888887744 4556678999999976432211111


Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC
Q 011457          300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      -...-.-+.|++....++.+...|.+.|++..+.+.+...-.|...+.++++.+.+..+...++.
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~  180 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDN  180 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHH
Confidence            12222237889889999999999999999988877766666688889999999877665554433

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.77  E-value=1.1  Score=49.46  Aligned_cols=148  Identities=14%  Similarity=0.219  Sum_probs=93.0

Q ss_pred             eCCCCEEEEECCCCeEEeEeccCCCceEEEEEC-CC--------CCEEEEEcCCCEEEEECCCCceeee-------e-cc
Q 011457          320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH-PT--------EDCFASASAENIKKFNLPKGEFLHN-------M-LS  382 (485)
Q Consensus       320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~-p~--------~~~l~~~~~~~i~i~d~~~~~~~~~-------~-~~  382 (485)
                      +.|..+.+|+..++.....+.+....|..+.+- |.        ...|+.+..-.|.++-+...+....       + ..
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            458899999999987777777766666665432 21        2355566666666654422211110       1 12


Q ss_pred             CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccc---------------ceeeeccCC-CCCCccEEEEEEccCC
Q 011457          383 QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ---------------AQTIVQPGS-LDSEAGIYALSYDVTG  446 (485)
Q Consensus       383 ~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~---------------~~~~~~~~~-~~~~~~V~~l~~s~~g  446 (485)
                      ..+..++|+....+|.++-+|.||.|+=.-.....-...               +-.. .+.. ..+..+|..+..+...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEecccc
Confidence            345678899988899888888888554332222111100               0000 0111 2456789999999999


Q ss_pred             CEEEEEECCCcEEEecCCCCCC
Q 011457          447 SRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       447 ~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      +.|.+-+..|+|.+|++..+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~~G~  276 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGGNGL  276 (1311)
T ss_pred             ceeeeeccCceEEEEEccCCCc
Confidence            9999999999999999987553

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.67  E-value=1.4  Score=45.71  Aligned_cols=180  Identities=12%  Similarity=0.160  Sum_probs=95.7

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      ...+++|.-+|.+..++.+..||.|++|+........... ...+-..+.|...|  |++...|..+.-|. ++|-..+.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqq   89 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQ   89 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee-ccCcchhh
Confidence            3457788888999999999999999999986554322221 12333455665544  67777888888886 44544444


Q ss_pred             ecc---cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 011457          255 YHG---HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR  331 (485)
Q Consensus       255 ~~~---h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~  331 (485)
                      +.-   ......++...|..+. ++|..-|-|.-+|.--.+-+..-   .-..+-+             .-..|.+-|+.
T Consensus        90 fdyndqsekefss~~cdptaqn-vvgtlcggv~q~dcclrr~i~kn---kfe~tyv-------------~pshvilkdls  152 (1636)
T KOG3616|consen   90 FDYNDQSEKEFSSILCDPTAQN-VVGTLCGGVEQFDCCLRRGILKN---KFELTYV-------------APSHVILKDLS  152 (1636)
T ss_pred             ccccchhhhhccceecCchhhh-hhhhhccceeeehHHHHhHHHhc---cceeEEe-------------ccceeeeeccc
Confidence            421   2233455556665433 23444444555553211111000   0000000             11234444444


Q ss_pred             CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc
Q 011457          332 YGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE  375 (485)
Q Consensus       332 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~  375 (485)
                      ++.....+.+..-.|..+.+....++++.-....|.+=|+++..
T Consensus       153 n~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~r  196 (1636)
T KOG3616|consen  153 NDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESNR  196 (1636)
T ss_pred             CCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccch
Confidence            44443333333334444555555666666666666666666544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.65  E-value=1.8  Score=44.96  Aligned_cols=110  Identities=12%  Similarity=0.141  Sum_probs=64.2

Q ss_pred             cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe
Q 011457          258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML  337 (485)
Q Consensus       258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~  337 (485)
                      ....++++.-+|.+..++.+..||+|++|+........... ...+-..+.|...|  |++...|..+.-|.- .|....
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~-dgvvqq   88 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE-DGVVQQ   88 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec-cCcchh
Confidence            34567888889999999999999999999986554322111 12233344454333  566666777777753 333333


Q ss_pred             Eecc---CCCceEEEEECCCCCEEEEEcCCCEEEEEC
Q 011457          338 TLTH---HKKSVRAMALHPTEDCFASASAENIKKFNL  371 (485)
Q Consensus       338 ~~~~---~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~  371 (485)
                      .+.-   ......++...|..+-++..-.+++..+|+
T Consensus        89 qfdyndqsekefss~~cdptaqnvvgtlcggv~q~dc  125 (1636)
T KOG3616|consen   89 QFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDC  125 (1636)
T ss_pred             hccccchhhhhccceecCchhhhhhhhhccceeeehH
Confidence            3221   123455666666655555444445555553

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.60  E-value=0.67  Score=41.87  Aligned_cols=69  Identities=20%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCC------CCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL------DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~------~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      +|++.+.+|.+++||+.+++.......+...-..      .....|..+.++.+|.-|++-+ +|..+.|+.+-..
T Consensus        24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~   98 (219)
T PF07569_consen   24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC   98 (219)
T ss_pred             EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence            8999999999999999998765443211111100      3456799999999998877765 5788888876543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.58  E-value=3.1  Score=40.89  Aligned_cols=97  Identities=8%  Similarity=0.088  Sum_probs=71.7

Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe----EeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc
Q 011457          300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML----TLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE  375 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~----~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~  375 (485)
                      ..++|.++.|++|.+.+++--.+.+|.+++....+...    +.+.....|....|+.+ .-++..++.++-+|-+...+
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pek  143 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEK  143 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhh
Confidence            46799999999999999999999999999974333222    22333446889999866 66777777888888776555


Q ss_pred             eeeeeccCCcccEEEEEeCCCC
Q 011457          376 FLHNMLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       376 ~~~~~~~~~~~~i~~~~~~~~~  397 (485)
                      ........++..|+-..|.++.
T Consensus       144 rslRlVks~~~nvnWy~yc~et  165 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPET  165 (657)
T ss_pred             hhhhhhhhcccCccEEEEcccc
Confidence            4444456677778888888877

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.36  E-value=0.68  Score=29.39  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=26.0

Q ss_pred             cceEEEEEccCC---CEEEEEeCCCeEEEEECCC
Q 011457          176 GWVRSVAFDHSN---TWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       176 ~~V~~l~~sp~~---~~l~tgs~dg~I~iwd~~~  206 (485)
                      |.|+++.|+|++   ++|+..-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            579999999844   5888887789999999985

It contains a characteristic DLL sequence motif.

>PLN02153 epithiospecifier protein

Probab=92.32  E-value=12  Score=36.47  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=52.5

Q ss_pred             CCCEEEEEeCC-------CeEEEEECCCCceEEEEc-c--ccc---CEEEEEEcCCCCEEEEEeCC-----CcEEEEECC
Q 011457          186 SNTWFCTGSAD-------RTIKIWDVAKGTLKLTLT-G--HIE---QVRGLAVSSKHTYMFSAGDD-----KQVKCWDLE  247 (485)
Q Consensus       186 ~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~-~--h~~---~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~  247 (485)
                      ++.+++.|+.+       ..+.+||+.+.+-...-. +  ...   ....+.+  ++.+++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            45666667653       357888887764332111 0  000   1112222  45666666643     357889988


Q ss_pred             CCeeEEE--ecc---cCCceEEEEEecCCCEEEEEECC-----------CcEEEEECCCC
Q 011457          248 QNKVIRS--YHG---HLSGVYCLGLHPTIDILLTGGRD-----------SVCRVWDIRTK  291 (485)
Q Consensus       248 ~~~~~~~--~~~---h~~~v~~l~~~~~~~~l~sg~~d-----------g~i~iwd~~~~  291 (485)
                      +++....  +..   ........+..-++++++.|+.+           ..+.+||..+.
T Consensus       110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~  169 (341)
T PLN02153        110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG  169 (341)
T ss_pred             CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence            7654321  110   11111112222345677777754           24778888764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.21  E-value=4.4  Score=40.63  Aligned_cols=95  Identities=19%  Similarity=0.234  Sum_probs=56.2

Q ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          345 SVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      .|..+..++.|..++..+.+++.+..++..--....+......|+|-.+.-+..+++.+.  .+                
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~--~l----------------  166 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST--SL----------------  166 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC--ce----------------
Confidence            467788899999999999999888877542211222233344455555444433333221  11                


Q ss_pred             eeccCCCCCCccEEEEEEccCC---CEEEEEECCCcEEEecCCCCCC
Q 011457          425 IVQPGSLDSEAGIYALSYDVTG---SRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       425 ~~~~~~~~~~~~V~~l~~s~~g---~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                                 .+..++|+|+.   ..|..-..|..|++|+......
T Consensus       167 -----------tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  167 -----------TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             -----------eeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence                       13345566653   4566666777788887766543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.07  E-value=10  Score=42.41  Aligned_cols=228  Identities=15%  Similarity=0.113  Sum_probs=107.4

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCC-ceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLS-GVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA  296 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  296 (485)
                      .....++|+|...+++.+..+|.|++|-...-+.......... .+..+.+-...........+..+.+|.......+. 
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~-  114 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF-  114 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence            4556789999999999999999999997654433332221111 11222221111223333444455555544322221 


Q ss_pred             eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe-EeccCCCce--EEEEECCCCCEEEEEcCCCEEEEECCC
Q 011457          297 LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML-TLTHHKKSV--RAMALHPTEDCFASASAENIKKFNLPK  373 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~v--~~l~~~p~~~~l~~~~~~~i~i~d~~~  373 (485)
                         +...+++....+--.+ +-| .++.+++||..-..... .+..-....  .-...++.-.......+-+...+-+..
T Consensus       115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  189 (993)
T KOG1983|consen  115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLPD  189 (993)
T ss_pred             ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeeccc
Confidence               2233333333222223 445 78888888865221110 000000000  000000000000000000111111111


Q ss_pred             CceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457          374 GEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       374 ~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      ..  .. ...+...+.+..+....-++.+...+.+-+|+.........+..             ....++.++..++++.
T Consensus       190 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~h  253 (993)
T KOG1983|consen  190 AY--LG-LSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLP-------------NGQLESRDGSHFVSYH  253 (993)
T ss_pred             cc--cc-ccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccc-------------ccccCccCCceEEEEE
Confidence            11  00 12233445555555555566666677888887655433332221             1111278899999999


Q ss_pred             CCCcEEEecCCCCC
Q 011457          454 ADKTIKMWREDETA  467 (485)
Q Consensus       454 ~Dg~I~iW~~~~~~  467 (485)
                      .||.+.+||++.+.
T Consensus       254 ~Dgs~~fWd~s~g~  267 (993)
T KOG1983|consen  254 TDGSYAFWDVSSGK  267 (993)
T ss_pred             ecCCEEeeecCCCc
Confidence            99999999999864

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.00  E-value=12  Score=36.08  Aligned_cols=143  Identities=20%  Similarity=0.333  Sum_probs=87.0

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCe------EEEEECCC--C--ceE-----EEEccccc--------CEEEEEEcCCCCE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRT------IKIWDVAK--G--TLK-----LTLTGHIE--------QVRGLAVSSKHTY  231 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~------I~iwd~~~--~--~~~-----~~~~~h~~--------~V~~l~~s~~~~~  231 (485)
                      -+.+..|.+.+++..+++.+.+|.      +..+++..  +  ..+     ..+....+        ...+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            467889999976667777778887      66666543  1  001     11111111        3447888778887


Q ss_pred             EEEEeCC------CcEEEEECCCCeeEEEec---------------ccCCceEEEEEecCCCEEEEEEC-----CC--c-
Q 011457          232 MFSAGDD------KQVKCWDLEQNKVIRSYH---------------GHLSGVYCLGLHPTIDILLTGGR-----DS--V-  282 (485)
Q Consensus       232 l~s~~~d------g~V~iwd~~~~~~~~~~~---------------~h~~~v~~l~~~~~~~~l~sg~~-----dg--~-  282 (485)
                      +++.-.+      ..|..++.. |+.+..+.               ..+...-+|+++|+|+.|+++..     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7777666      788888876 66554441               13456889999999997766544     22  1 


Q ss_pred             ------EEE--EECCC-Cce----EEEecc-----CCccEEEEEEcCCCCEEEE
Q 011457          283 ------CRV--WDIRT-KMQ----IFALAG-----HDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       283 ------i~i--wd~~~-~~~----~~~~~~-----~~~~v~~l~~~~~~~~l~s  318 (485)
                            +++  ||..+ +..    .+.+..     ....++.+.+.+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  444  44443 212    222222     3457778888888776553

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.91  E-value=11  Score=35.38  Aligned_cols=114  Identities=14%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE------CCCcEEEEECCCCceEEEecc-----CCccEEEE
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG------RDSVCRVWDIRTKMQIFALAG-----HDNTVCSV  307 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~l  307 (485)
                      ..|++||..+.+...--.+-.+.|+.|.|..+.++++.|.      ....+..||+.+.. ...+.+     -.++|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence            4699999988877766666778999999997666666664      35568889987654 223332     23678877


Q ss_pred             EEcC-CCC-EEEEEe-CC--CCEEEEECCCCeEEeE-eccCCCceEEEEECC
Q 011457          308 FTRP-TDP-QVVTGS-HD--STIKFWDLRYGKTMLT-LTHHKKSVRAMALHP  353 (485)
Q Consensus       308 ~~~~-~~~-~l~s~s-~d--g~I~iwd~~~~~~~~~-~~~~~~~v~~l~~~p  353 (485)
                      .+.. ++. ..+.|. .+  ..|..||-.....+.. .......|+.+.+-|
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            7643 333 343433 23  3477777665555444 333345566665543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.85  E-value=10  Score=34.93  Aligned_cols=229  Identities=16%  Similarity=0.148  Sum_probs=145.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-E
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR-S  254 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~-~  254 (485)
                      ..-..++-.|||..-+++...+.|--.|-.+|+....--+....-..|..-|++..-++-+.. -|.-.|-++.+..+ .
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence            344567888999888888888888888999998877666666666778888888766654333 45556655554322 1


Q ss_pred             e--cccCCceEEEEEecCCCEEEEEECC---------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 011457          255 Y--HGHLSGVYCLGLHPTIDILLTGGRD---------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS  323 (485)
Q Consensus       255 ~--~~h~~~v~~l~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg  323 (485)
                      +  +.-........|.+.|++-+++...         +.|++|+.-          ....-..|+..|+|..-++.-.+.
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagn  210 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGN  210 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEecccc
Confidence            1  2233556778899999888887531         233333332          234556788899999888888888


Q ss_pred             CEEEEECCCCeEEeEe--ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457          324 TIKFWDLRYGKTMLTL--THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL  399 (485)
Q Consensus       324 ~I~iwd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  399 (485)
                      .|-..|..++.....-  ......-+.+--+|.+..-++....+ +..||-....-..--+...+..-.++.+...+ +.
T Consensus       211 aiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW  290 (353)
T COG4257         211 AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVW  290 (353)
T ss_pred             ceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEE
Confidence            8888888776332211  11133456666677888777654444 77777655443322234444555566666666 34


Q ss_pred             EEEeCCCcEEEEeCCC
Q 011457          400 ATGGDNGSLWFWDWKS  415 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~  415 (485)
                      ++-...|.|.-+|-++
T Consensus       291 ~sea~agai~rfdpet  306 (353)
T COG4257         291 LSEADAGAIGRFDPET  306 (353)
T ss_pred             eeccccCceeecCccc
Confidence            4444556676676554

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=91.72  E-value=14  Score=36.01  Aligned_cols=41  Identities=22%  Similarity=0.195  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCeeEEEecc-cC-CceEEEEEecCCCEEEEEECC
Q 011457          239 KQVKCWDLEQNKVIRSYHG-HL-SGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~-h~-~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      ..|.+||..+++....-.. .. ..-.+++ .-++++++.|+.+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence            4688899887654332111 11 1112222 3356777777753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=91.59  E-value=19  Score=37.28  Aligned_cols=228  Identities=12%  Similarity=0.161  Sum_probs=120.9

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCe---eEEEeccc-CCceEEEEEecCC-CEEEEEECCC--cEEEEECCCCceEEEec
Q 011457          226 SSKHTYMFSAGDDKQVKCWDLEQNK---VIRSYHGH-LSGVYCLGLHPTI-DILLTGGRDS--VCRVWDIRTKMQIFALA  298 (485)
Q Consensus       226 s~~~~~l~s~~~dg~V~iwd~~~~~---~~~~~~~h-~~~v~~l~~~~~~-~~l~sg~~dg--~i~iwd~~~~~~~~~~~  298 (485)
                      ..++..++.+.++|.+....+....   .+..+ +. .....++.+..++ .+|+.|+.-|  .+.-|....-+.+..+.
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence            4566788889999999988876544   22222 22 4556677777665 4788887755  45555533344444554


Q ss_pred             cCCccEEEEEEcCC----CC------EEEEEe---CCCCEEEEECCCCeEEe--E--eccC--CCceEEEEECC-CCCEE
Q 011457          299 GHDNTVCSVFTRPT----DP------QVVTGS---HDSTIKFWDLRYGKTML--T--LTHH--KKSVRAMALHP-TEDCF  358 (485)
Q Consensus       299 ~~~~~v~~l~~~~~----~~------~l~s~s---~dg~I~iwd~~~~~~~~--~--~~~~--~~~v~~l~~~p-~~~~l  358 (485)
                       .-++|..+++.+.    ..      .+++++   .+|.+++..  .|-...  .  ....  -..++.+.... +..++
T Consensus       298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~l  374 (504)
T PF10433_consen  298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYL  374 (504)
T ss_dssp             ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEE
T ss_pred             -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEE
Confidence             4567888877532    22      566654   467888874  332222  1  1111  23344444332 25677


Q ss_pred             EEEcCCCEEEEECC---CCceeeee----ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCC
Q 011457          359 ASASAENIKKFNLP---KGEFLHNM----LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL  431 (485)
Q Consensus       359 ~~~~~~~i~i~d~~---~~~~~~~~----~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  431 (485)
                      +.+..+.-.++.+.   ..+.+..+    +......+.+-.+. ++.++=.+.. .|++.+...++....+..       
T Consensus       375 v~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQVt~~-~i~l~~~~~~~~~~~w~~-------  445 (504)
T PF10433_consen  375 VLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQVTPK-GIRLIDLEDGKLTQEWKP-------  445 (504)
T ss_dssp             EEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEEESS-EEEEEESSSTSEEEEEE--------
T ss_pred             EEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEEecC-eEEEEECCCCeEEEEEeC-------
Confidence            77777776666663   33333222    11122233333333 5566666555 588888766655444322       


Q ss_pred             CCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          432 DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      .....|.+.+..  +.+++.+-.++.+.++.++....
T Consensus       446 ~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~  480 (504)
T PF10433_consen  446 PAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKI  480 (504)
T ss_dssp             TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEE
T ss_pred             CCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCce
Confidence            134456666665  45777777889999998876553

...

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.44  E-value=14  Score=35.57  Aligned_cols=105  Identities=10%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCceE---EEEcccccCE--EEEEEcCCCCEEEEEeC-----CCcEEEEECCCCe
Q 011457          186 SNTWFCTGSAD-----RTIKIWDVAKGTLK---LTLTGHIEQV--RGLAVSSKHTYMFSAGD-----DKQVKCWDLEQNK  250 (485)
Q Consensus       186 ~~~~l~tgs~d-----g~I~iwd~~~~~~~---~~~~~h~~~V--~~l~~s~~~~~l~s~~~-----dg~V~iwd~~~~~  250 (485)
                      ++.+++.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++. -++.+.+.|+.     ...+.+||+.+++
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            56677777764     35777777665531   1221111111  12222 24566666664     2468889988775


Q ss_pred             eEEE--ecccCCceEEEEEecCCCEEEEEECCCc----EEEEECCCCc
Q 011457          251 VIRS--YHGHLSGVYCLGLHPTIDILLTGGRDSV----CRVWDIRTKM  292 (485)
Q Consensus       251 ~~~~--~~~h~~~v~~l~~~~~~~~l~sg~~dg~----i~iwd~~~~~  292 (485)
                      ....  +.. .......+..-++++.+.|+.++.    +.+||..+.+
T Consensus       151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            4332  211 111222223345677888877643    5678887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.40  E-value=12  Score=34.84  Aligned_cols=153  Identities=8%  Similarity=0.018  Sum_probs=94.6

Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 011457          216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ  293 (485)
Q Consensus       216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~  293 (485)
                      -.+-+..+.++  +++.+.+..+.-++|.|+.+...-..+..  ..+.-+++  .-.|++..++..|.-+.+.|+.+...
T Consensus        85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCCC
Confidence            34566777776  45677777778899999987654333221  12333444  34578999988777788899876432


Q ss_pred             ---EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe--ccCCCceEEEEECCCCCEEEEEcCCCEEE
Q 011457          294 ---IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL--THHKKSVRAMALHPTEDCFASASAENIKK  368 (485)
Q Consensus       294 ---~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~~~~~~~i~i  368 (485)
                         ..........-..+..+  |++-..+..|+-+.+-|+.......-+  ......+.++..+++..+++.. ..++.+
T Consensus       161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-~egvli  237 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-DEGVLI  237 (370)
T ss_pred             ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-ccceEE
Confidence               22333333444566665  677788889999999999764332211  1123367888888766555544 445666


Q ss_pred             EECCCCc
Q 011457          369 FNLPKGE  375 (485)
Q Consensus       369 ~d~~~~~  375 (485)
                      .|....+
T Consensus       238 vd~s~~s  244 (370)
T COG5276         238 VDVSGPS  244 (370)
T ss_pred             EecCCCC
Confidence            6655444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.34  E-value=0.97  Score=28.70  Aligned_cols=32  Identities=22%  Similarity=0.154  Sum_probs=26.3

Q ss_pred             cCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 011457          218 EQVRGLAVSSKH---TYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       218 ~~V~~l~~s~~~---~~l~s~~~dg~V~iwd~~~~  249 (485)
                      +.|+++.|+|+.   .+|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999754   48888888899999999853

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.26  E-value=1.9  Score=38.95  Aligned_cols=66  Identities=12%  Similarity=0.207  Sum_probs=49.9

Q ss_pred             cCCCCEEEEEeCCCCEEEEECCCCeEEeEe-------c-------cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc
Q 011457          310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTL-------T-------HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE  375 (485)
Q Consensus       310 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~  375 (485)
                      ..++.+|++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+.+..+.|+..-+.
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~   98 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC   98 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence            346788999999999999999998765432       1       24456888888888888888777778888765443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.21  E-value=2.3  Score=47.18  Aligned_cols=135  Identities=9%  Similarity=0.178  Sum_probs=88.9

Q ss_pred             CCCeEEEEECCCCceEEEEcccccCEEEEEEc--------CCCCEEEEEeCCCcEEEEECCCCee-------E--EEecc
Q 011457          195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS--------SKHTYMFSAGDDKQVKCWDLEQNKV-------I--RSYHG  257 (485)
Q Consensus       195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s--------~~~~~l~s~~~dg~V~iwd~~~~~~-------~--~~~~~  257 (485)
                      .|+.+.+|+.+++.....+.+-...|..+..-        |.=++++..+.--.|.++-+.-.+.       .  ..+..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            57889999999988888888877777777653        2334455444455677765432211       1  12223


Q ss_pred             cCCceEEEEEecCCCEEEEEECCCcEEEEECC----CC---c-e----------------EEEec-cCCccEEEEEEcCC
Q 011457          258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR----TK---M-Q----------------IFALA-GHDNTVCSVFTRPT  312 (485)
Q Consensus       258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~----~~---~-~----------------~~~~~-~~~~~v~~l~~~~~  312 (485)
                      ....|.|+....+|+.+++ |.||  .+|.+.    .+   + +                +..+. .+..+|..+.+...
T Consensus       177 dg~~V~~I~~t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             CCceEEEEEeccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            3567889997778876655 5566  444431    11   0 0                11222 46779999999988


Q ss_pred             CCEEEEEeCCCCEEEEECCC
Q 011457          313 DPQVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~  332 (485)
                      ...+.+-+..|+|.+||+..
T Consensus       254 R~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cceeeeeccCceEEEEEccC
Confidence            88999999999999999976

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.86  E-value=29  Score=38.16  Aligned_cols=140  Identities=12%  Similarity=0.103  Sum_probs=81.1

Q ss_pred             CCCEEEEECC-CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCC-cccEEEEEeCCCCeE
Q 011457          322 DSTIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEGVL  399 (485)
Q Consensus       322 dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l  399 (485)
                      +|.++.|++- .++.+.-+....-+-.-.++.|...++.++-.+.+++|++.+.+.++...... ...|..+.+... .+
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~-RI  989 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA-RI  989 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecce-EE
Confidence            3446666653 23322222211112233456677778888887889999999888776653333 455666666554 67


Q ss_pred             EEEeCCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          400 ATGGDNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      ++|...-.+.++.++.... +..+..-      .-...|+++.+- |...++.+..=|.+.+-++......
T Consensus       990 ~VgD~qeSV~~~~y~~~~n~l~~fadD------~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~e 1053 (1205)
T KOG1898|consen  990 VVGDIQESVHFVRYRREDNQLIVFADD------PVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVSE 1053 (1205)
T ss_pred             EEeeccceEEEEEEecCCCeEEEEeCC------CccceeeEEEEe-cCCceeeccccCcEEEEECCCcchh
Confidence            7777776777766554322 1111110      112236666554 4446777877788888888765543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.70  E-value=14  Score=34.40  Aligned_cols=271  Identities=10%  Similarity=0.032  Sum_probs=141.6

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN--  249 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~--  249 (485)
                      -.+-+..+.++  +++...+..+.-++|.|+.+-.....+..-  .+--.++.  -.|++..++..|.-..+.|+.+.  
T Consensus        85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCC
Confidence            35667788887  556666666777999999876543322211  12233333  35788888886666778888654  


Q ss_pred             -eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457          250 -KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSHDSTIK  326 (485)
Q Consensus       250 -~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg~I~  326 (485)
                       .+...+.........++.+  |++-..+.+|+-+.+.|+.......-+.  .....+.++..+++..+++..  +--+.
T Consensus       161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvl  236 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVL  236 (370)
T ss_pred             ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceE
Confidence             3444444344444555555  6778888899999999997654322111  123378888888766555544  34577


Q ss_pred             EEECCCCeEEeEecc--CCC--ceEEEEECCCCCEEEEE-cCCCEEEEECCCC--ceeeeeccCCcccEEEEEeCCCCeE
Q 011457          327 FWDLRYGKTMLTLTH--HKK--SVRAMALHPTEDCFASA-SAENIKKFNLPKG--EFLHNMLSQQKTIINSMAVNEEGVL  399 (485)
Q Consensus       327 iwd~~~~~~~~~~~~--~~~--~v~~l~~~p~~~~l~~~-~~~~i~i~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~l  399 (485)
                      +-|....+....+-.  ...  .+..+..+  +++.... +..++.+.|+.+.  .++..-.......-..+....+ ++
T Consensus       237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~-y~  313 (370)
T COG5276         237 IVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGN-YN  313 (370)
T ss_pred             EEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecC-ee
Confidence            777766554333321  112  22222332  3333333 2333555555432  2222111111111222222221 33


Q ss_pred             EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      ..+..+ ...+-+...-+.....        .+....+.+.+.+-+.+.+.+...++-+.||+..
T Consensus       314 yiadkn-~g~vV~~s~~s~m~~~--------~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         314 YIADKN-TGAVVDASPPSMMDKR--------PGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             EeccCC-ceEEEeCCChhhcccc--------cCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence            333222 3333343322211111        1112234445555556688888999999999863

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.62  E-value=10  Score=33.76  Aligned_cols=146  Identities=9%  Similarity=0.087  Sum_probs=79.8

Q ss_pred             CEEEEEeCCCCEEEEECCC--CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-------EEEE---ECC--CCceeee
Q 011457          314 PQVVTGSHDSTIKFWDLRY--GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-------IKKF---NLP--KGEFLHN  379 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-------i~i~---d~~--~~~~~~~  379 (485)
                      ..|+.+...+.|.+|++..  .+....+..- +.|..+.++..|+++++--.++       +++|   +..  ....+..
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            3454446677899999983  3445555543 7899999999999999875442       3443   322  1122221


Q ss_pred             eccC---------------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc-cccceeeec-cCCCCC--
Q 011457          380 MLSQ---------------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN-FQQAQTIVQ-PGSLDS--  433 (485)
Q Consensus       380 ~~~~---------------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~-~~~~~~--  433 (485)
                      ...+                     -.....+++..|-. -|++|+. +++.+|.+..... ...+..... .....+  
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            1111                     12235566666544 6777765 4888998765433 111111100 011112  


Q ss_pred             CccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          434 EAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       434 ~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .-....+++.  +.|+|..+ |-.+++.++.
T Consensus       187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~  214 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKLE  214 (215)
T ss_pred             CceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence            2224555555  66777765 5567777653

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.57  E-value=27  Score=38.40  Aligned_cols=170  Identities=9%  Similarity=0.099  Sum_probs=96.7

Q ss_pred             cEEEEECCCCeeEEEeccc----CCceEEEEEecCCC--EEEEEEC-----------CCcEEEEECCC-CceEEEec--c
Q 011457          240 QVKCWDLEQNKVIRSYHGH----LSGVYCLGLHPTID--ILLTGGR-----------DSVCRVWDIRT-KMQIFALA--G  299 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~--~l~sg~~-----------dg~i~iwd~~~-~~~~~~~~--~  299 (485)
                      .|++.|..+++.+..+.-.    .-.+..+.|+....  ++++|+.           +|.++.|++-. ++.+.-+.  .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            4788888877766555321    12356666665433  3333332           34566666533 33222221  1


Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcC-CC--EEEEECCCC
Q 011457          300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASA-EN--IKKFNLPKG  374 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~-~~--i~i~d~~~~  374 (485)
                      -.+.+.  ++.|...++++| ....+++||+-..+.++....  -...|..+.+.  +..++++.. +.  ...|+-..+
T Consensus       934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred             CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCC
Confidence            223333  445555555554 456899999987776654432  23456666653  455555544 44  445555555


Q ss_pred             ceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      +.+.-.-..-...++++.+-..+.++.+..-|.+.+-.+.
T Consensus      1009 ~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             eEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECC
Confidence            5444333344556777777777788888888998888764

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.51  E-value=20  Score=35.69  Aligned_cols=147  Identities=8%  Similarity=0.036  Sum_probs=83.3

Q ss_pred             eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe-----EE
Q 011457          262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-----TM  336 (485)
Q Consensus       262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~-----~~  336 (485)
                      ...+...+++.+++.+..-..++-||--...=...-......+..+.+.+++..++++ .+|.+.. ....++     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence            3445566777766665544333344432110011112235578899999888777665 5565443 333343     22


Q ss_pred             eEecc--CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec--cCCcccEEEEEeCCCCeEEEEeCCCcEEEE
Q 011457          337 LTLTH--HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML--SQQKTIINSMAVNEEGVLATGGDNGSLWFW  411 (485)
Q Consensus       337 ~~~~~--~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~l~sg~~dg~I~iw  411 (485)
                      .....  ....+.++.|.+++..++++..+.+. .....|+.-....  ..-...+..+.|.+++...+.+.+|.|.-|
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~-~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILL-RSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEECCCcEE-EeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            22222  22358899999888877777655443 3344555433322  122345778888887777777888888765

>PRK05560 DNA gyrase subunit A; Validated

Probab=90.25  E-value=32  Score=37.75  Aligned_cols=237  Identities=12%  Similarity=0.025  Sum_probs=0.0

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC---------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEEC---------
Q 011457          227 SKHTYMFSAGDDKQVKCWDLEQ---------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI---------  288 (485)
Q Consensus       227 ~~~~~l~s~~~dg~V~iwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~---------  288 (485)
                      ++...++..+.+|.|+--++..         +.....++ -...+..+....+.+.|+..+..|.+.....         
T Consensus       496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~  574 (805)
T PRK05560        496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRT  574 (805)
T ss_pred             CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcC


Q ss_pred             CCCceE---EEeccCCccEEEEEEcC--CCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECCCCC
Q 011457          289 RTKMQI---FALAGHDNTVCSVFTRP--TDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHPTED  356 (485)
Q Consensus       289 ~~~~~~---~~~~~~~~~v~~l~~~~--~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~  356 (485)
                      ..|..+   ..+...+.-+..+.+..  +...++..+.+|.++--++..       |.....+.....-+..+....+..
T Consensus       575 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~  654 (805)
T PRK05560        575 ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDD  654 (805)
T ss_pred             CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCE


Q ss_pred             EEEEEcCCCEEEEEC---------CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeee
Q 011457          357 CFASASAENIKKFNL---------PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIV  426 (485)
Q Consensus       357 ~l~~~~~~~i~i~d~---------~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~  426 (485)
                      .++..+.+.+..+..         ..|.....+ ......+..+.+.++. .++..+..|.++...+..-.....-..-.
T Consensus       655 lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~  733 (805)
T PRK05560        655 ILLATKNGKAIRFPESDVRPMGRTARGVRGIKL-REGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGV  733 (805)
T ss_pred             EEEEECCCcEEEEEhhhcCccCcccCCcccccC-CCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcE


Q ss_pred             ccCCCCC-CccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          427 QPGSLDS-EAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       427 ~~~~~~~-~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      ....+.. ...+..+........++..+.+|.+..++.++
T Consensus       734 ~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e  773 (805)
T PRK05560        734 ITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE  773 (805)
T ss_pred             EeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH

>PLN02153 epithiospecifier protein

Probab=90.06  E-value=19  Score=34.90  Aligned_cols=64  Identities=22%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceE--EEecc---CCcc-EEEEEEcCCCCEEEEEeCC-----------CCEEE
Q 011457          270 TIDILLTGGRD-----SVCRVWDIRTKMQI--FALAG---HDNT-VCSVFTRPTDPQVVTGSHD-----------STIKF  327 (485)
Q Consensus       270 ~~~~l~sg~~d-----g~i~iwd~~~~~~~--~~~~~---~~~~-v~~l~~~~~~~~l~s~s~d-----------g~I~i  327 (485)
                      ++.+++.|+.+     ..+.+||..+.+-.  ..+..   .... -.+++ .-++.+++.|+.+           ..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence            45677777754     35778888764321  11100   0111 11222 2345566676653           24778


Q ss_pred             EECCCCe
Q 011457          328 WDLRYGK  334 (485)
Q Consensus       328 wd~~~~~  334 (485)
                      ||..+.+
T Consensus       164 yd~~~~~  170 (341)
T PLN02153        164 YNIADGK  170 (341)
T ss_pred             EECCCCe
Confidence            8887654

>PLN02193 nitrile-specifier protein

Probab=89.79  E-value=26  Score=35.89  Aligned_cols=186  Identities=13%  Similarity=0.109  Sum_probs=86.6

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCeeEEEec-c-cCC--ceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 011457          228 KHTYMFSAGDD-------KQVKCWDLEQNKVIRSYH-G-HLS--GVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTK  291 (485)
Q Consensus       228 ~~~~l~s~~~d-------g~V~iwd~~~~~~~~~~~-~-h~~--~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~  291 (485)
                      ++.+++.|+.+       ..+.+||+++.+....-. + ...  ........-++.+++.|+.+     ..+.+||+.+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            34555566643       347788988766443111 0 001  11111122245677777765     35788888765


Q ss_pred             ceEEEeccC-----CccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEeEec-----cCCCceEEEEECCCCC
Q 011457          292 MQIFALAGH-----DNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTMLTLT-----HHKKSVRAMALHPTED  356 (485)
Q Consensus       292 ~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~~p~~~  356 (485)
                      +-.. +...     ...-.++.. -++.+++.|+.++     .+..||+.+.+-...-.     ...... .++.. ++.
T Consensus       255 ~W~~-l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~~-~gk  330 (470)
T PLN02193        255 EWKL-LTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEVV-QGK  330 (470)
T ss_pred             EEEE-cCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEEE-CCc
Confidence            3221 1110     111112222 2455666776543     36778877654321110     001111 12222 455


Q ss_pred             EEEEEcCC-----CEEEEECCCCceeeeecc---CCcccEEEEEeCCCCeEEEEeCC--------------CcEEEEeCC
Q 011457          357 CFASASAE-----NIKKFNLPKGEFLHNMLS---QQKTIINSMAVNEEGVLATGGDN--------------GSLWFWDWK  414 (485)
Q Consensus       357 ~l~~~~~~-----~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~sg~~d--------------g~I~iwd~~  414 (485)
                      +++.++.+     .+.+||..+.+-...-..   .......+++...+.+++.|+.+              ..+.+||..
T Consensus       331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~  410 (470)
T PLN02193        331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE  410 (470)
T ss_pred             EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence            65555432     388999887654322111   11111222233333366666643              247888887


Q ss_pred             CCc
Q 011457          415 SGH  417 (485)
Q Consensus       415 ~~~  417 (485)
                      +.+
T Consensus       411 t~~  413 (470)
T PLN02193        411 TLQ  413 (470)
T ss_pred             cCE
Confidence            653

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.70  E-value=4.2  Score=40.94  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=25.9

Q ss_pred             CccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          434 EAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       434 ~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      ...|.++..++..+.|++...+|.|.+|++..
T Consensus       189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            34599999999999999999999999999976

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.59  E-value=1  Score=43.99  Aligned_cols=168  Identities=14%  Similarity=0.131  Sum_probs=103.4

Q ss_pred             ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE-E-ccccc----CEE-EEEEcCCCCEEEEEeCC
Q 011457          166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT-L-TGHIE----QVR-GLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~-~-~~h~~----~V~-~l~~s~~~~~l~s~~~d  238 (485)
                      +.++.+..--..|..+-..|||++|..-+. ..+.|+++.+...... + ....+    .|+ .+..-..|.-++++..|
T Consensus       211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence            344446666678889999999998877665 6788998876543221 1 11111    111 12223356668888999


Q ss_pred             CcEEEE-ECCCC-----eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC
Q 011457          239 KQVKCW-DLEQN-----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT  312 (485)
Q Consensus       239 g~V~iw-d~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  312 (485)
                      |.|.-| |...+     ..++.++-....+..+.--.+.+-+++-+.+|++.++.....+.+..-. --..+..+.++|.
T Consensus       290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~  368 (733)
T COG4590         290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPN  368 (733)
T ss_pred             CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcc
Confidence            999888 43322     2233333233444444333344567888889999888765544433222 2336677889999


Q ss_pred             CCEEEEEeCCCCEEEEECCCCeEE
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGKTM  336 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~~~  336 (485)
                      +.++++- ..|.|+++.+.+..+.
T Consensus       369 ~~~Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         369 QAYLLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             cchheee-cCCceEEEEecCCCCC
Confidence            9888864 4578999988765443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.41  E-value=2.7  Score=43.92  Aligned_cols=72  Identities=19%  Similarity=0.318  Sum_probs=45.8

Q ss_pred             cCCCEEEEEeCCCeEEEEECCC----CceEEEE--cc--------------------cccCEEEEEEcC----CCCEEEE
Q 011457          185 HSNTWFCTGSADRTIKIWDVAK----GTLKLTL--TG--------------------HIEQVRGLAVSS----KHTYMFS  234 (485)
Q Consensus       185 p~~~~l~tgs~dg~I~iwd~~~----~~~~~~~--~~--------------------h~~~V~~l~~s~----~~~~l~s  234 (485)
                      ++...|+.+..||.+.......    +......  ..                    ....+..++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667788888898888877654    2111111  10                    123456666666    6789999


Q ss_pred             EeCCCcEEEEECCCCeeEEEec
Q 011457          235 AGDDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       235 ~~~dg~V~iwd~~~~~~~~~~~  256 (485)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02193 nitrile-specifier protein

Probab=89.38  E-value=27  Score=35.67  Aligned_cols=145  Identities=12%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             CCCEEEEEeCC-------CeEEEEECCCCceEEEEcc---ccc--CEEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 011457          186 SNTWFCTGSAD-------RTIKIWDVAKGTLKLTLTG---HIE--QVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQ  248 (485)
Q Consensus       186 ~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~~---h~~--~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~  248 (485)
                      ++.+++.|+.+       ..+.+||+.+.+-.. +..   ...  ........-++.+.+.|+.+     ..+.+||+.+
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t  253 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT  253 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence            45666666643       247788887654332 111   000  11111112245566666654     4688899987


Q ss_pred             CeeEEEecc----cCCceEEEEEecCCCEEEEEECCC-----cEEEEECCCCceEEEecc------CCccEEEEEEcCCC
Q 011457          249 NKVIRSYHG----HLSGVYCLGLHPTIDILLTGGRDS-----VCRVWDIRTKMQIFALAG------HDNTVCSVFTRPTD  313 (485)
Q Consensus       249 ~~~~~~~~~----h~~~v~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~~  313 (485)
                      ++....-..    ....-.+++. -++++++.|+.++     .+..||+.+.+-. .+..      .........+  ++
T Consensus       254 ~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~~~--~g  329 (470)
T PLN02193        254 NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLEVV--QG  329 (470)
T ss_pred             CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEEEE--CC
Confidence            765432111    1111122222 2456777777653     4677887664321 1110      1111112222  46


Q ss_pred             CEEEEEeCC----CCEEEEECCCCeE
Q 011457          314 PQVVTGSHD----STIKFWDLRYGKT  335 (485)
Q Consensus       314 ~~l~s~s~d----g~I~iwd~~~~~~  335 (485)
                      +.++.++.+    ..+.+||+.+.+-
T Consensus       330 kiyviGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        330 KVWVVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             cEEEEECCCCCccCceEEEECCCCEE
Confidence            677777655    4588999887654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.36  E-value=1.2  Score=43.54  Aligned_cols=162  Identities=16%  Similarity=0.138  Sum_probs=101.1

Q ss_pred             EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEec-ccCC----ceE-EEEEecCCCEEEEEECCCcEEE
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-IRSYH-GHLS----GVY-CLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~-~~~~~-~h~~----~v~-~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      +....+.|..+-..|||+.+..-+. .++.++++.+... ++++- ...+    .|+ .+..-..|.-+++++.||.|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4445577888889999998887655 6888998875432 11221 1011    122 1222334566888889998876


Q ss_pred             E-ECCCCce-----EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          286 W-DIRTKMQ-----IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       286 w-d~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      | |.+.+..     ++.++-....+..+.-..+.+-+++-+.+|++.++.....+.+..-. --..+.-++++|++.+++
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll  373 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLL  373 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchhe
Confidence            6 5553321     22222223444444444445567888889999988765554433222 223567789999999999


Q ss_pred             EEcCCCEEEEECCCCce
Q 011457          360 SASAENIKKFNLPKGEF  376 (485)
Q Consensus       360 ~~~~~~i~i~d~~~~~~  376 (485)
                      +-..++++++.+++...
T Consensus       374 ~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         374 SEDQGKIRLAQLENRNP  390 (733)
T ss_pred             eecCCceEEEEecCCCC
Confidence            99988999988866543

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=89.34  E-value=38  Score=37.20  Aligned_cols=241  Identities=9%  Similarity=0.015  Sum_probs=0.0

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCee---------EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC----
Q 011457          224 AVSSKHTYMFSAGDDKQVKCWDLEQNKV---------IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT----  290 (485)
Q Consensus       224 ~~s~~~~~l~s~~~dg~V~iwd~~~~~~---------~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~----  290 (485)
                      .+-++...+++.+.+|.|+--++.+...         ...++ -...+..+....+.+.|+..+.+|.+.......    
T Consensus       491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~  569 (800)
T TIGR01063       491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMK-DDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA  569 (800)
T ss_pred             hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccC-CCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC


Q ss_pred             -----CceE---EEeccCCccEEEEEE--cCCCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECC
Q 011457          291 -----KMQI---FALAGHDNTVCSVFT--RPTDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHP  353 (485)
Q Consensus       291 -----~~~~---~~~~~~~~~v~~l~~--~~~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p  353 (485)
                           |..+   ..+...+.-+..+.+  ..++..++..+.+|.++-.++..       |.....+.....-+..+....
T Consensus       570 ~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~~  649 (800)
T TIGR01063       570 SRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTSG  649 (800)
T ss_pred             CcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeCC


Q ss_pred             CCCEEEEEcCCCEEEEEC-------CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceee
Q 011457          354 TEDCFASASAENIKKFNL-------PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTI  425 (485)
Q Consensus       354 ~~~~l~~~~~~~i~i~d~-------~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~  425 (485)
                      +...++..+.+.+..+..       ....-...+.-..+..|..+..-.+. .++..+..|.++...+..-.....-..-
T Consensus       650 ~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kG  729 (800)
T TIGR01063       650 DDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKG  729 (800)
T ss_pred             CCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcc


Q ss_pred             eccCCCCCC-ccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          426 VQPGSLDSE-AGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       426 ~~~~~~~~~-~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      .....+... ..+..+....+...++..+.+|.+..+..++
T Consensus       730 v~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~e  770 (800)
T TIGR01063       730 VKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQD  770 (800)
T ss_pred             eEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhh

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.31  E-value=15  Score=32.51  Aligned_cols=173  Identities=10%  Similarity=0.085  Sum_probs=95.8

Q ss_pred             CCCEEEEEeCC--CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecccCCce
Q 011457          186 SNTWFCTGSAD--RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHGHLSGV  262 (485)
Q Consensus       186 ~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~h~~~v  262 (485)
                      +|.++.+.+.-  ..|++||+.+++.+.+-.-....+..=-...-+.++. -.-.+|.-..+|..+-+++..+. ..+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            45666666543  4799999999988765442211111101111122222 22367888999998888887765 33444


Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--CCcc---EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe
Q 011457          263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--HDNT---VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML  337 (485)
Q Consensus       263 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~---v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~  337 (485)
                      +.++  .|+..|+.++...+++.-|.++.....++.-  ...+   ++-+.|- +|...+-.-.+..|...|..+|+.+.
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            5554  3555677777777888888766543333221  1112   2223332 34444444444556666666666554


Q ss_pred             Eec------------cCCCceEEEEECCCCCEEEEEc
Q 011457          338 TLT------------HHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       338 ~~~------------~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      .+.            .+..-.+.+++.|++..|...+
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            432            2334567889998875554443

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.06  E-value=16  Score=39.77  Aligned_cols=68  Identities=10%  Similarity=0.136  Sum_probs=44.4

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCceEE---E------E--cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457          183 FDHSNTWFCTGSADRTIKIWDVAKGTLKL---T------L--TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       183 ~sp~~~~l~tgs~dg~I~iwd~~~~~~~~---~------~--~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      +..-|+.+..|+.||.+.+|.+.......   .      +  .-+..+|..+...+...++++- .|+.|.++++.+-+.
T Consensus        22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEP  100 (877)
T ss_pred             HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccc
Confidence            34458899999999999999986542111   1      1  1124667777666665555555 467788888766554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.66  E-value=13  Score=34.00  Aligned_cols=145  Identities=14%  Similarity=0.045  Sum_probs=0.0

Q ss_pred             EEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe---CCCcEEEEECCC------CeeEEEecccCCceEEEEEecCC
Q 011457          201 IWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG---DDKQVKCWDLEQ------NKVIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       201 iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---~dg~V~iwd~~~------~~~~~~~~~h~~~v~~l~~~~~~  271 (485)
                      +||+.+++....-....-...+-.+-+||++|.+|+   ....+++++..+      .......-.....--....-+||
T Consensus        50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG  129 (243)
T PF07250_consen   50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDG  129 (243)
T ss_pred             EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCC


Q ss_pred             CEEEEEECCCcEEEEECC--CCceEEEe--------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc
Q 011457          272 DILLTGGRDSVCRVWDIR--TKMQIFAL--------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH  341 (485)
Q Consensus       272 ~~l~sg~~dg~i~iwd~~--~~~~~~~~--------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~  341 (485)
                      +.|+.|+.+.-..-+--.  .......+        ......--.+...|+|+.|+.+..++.|.  |..+++.+..+..
T Consensus       130 ~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~--d~~~n~v~~~lP~  207 (243)
T PF07250_consen  130 RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY--DYKTNTVVRTLPD  207 (243)
T ss_pred             CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE--eCCCCeEEeeCCC


Q ss_pred             CCCceE
Q 011457          342 HKKSVR  347 (485)
Q Consensus       342 ~~~~v~  347 (485)
                      -.+.++
T Consensus       208 lPg~~R  213 (243)
T PF07250_consen  208 LPGGPR  213 (243)
T ss_pred             CCCCce

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.62  E-value=17  Score=32.34  Aligned_cols=129  Identities=17%  Similarity=0.238  Sum_probs=73.0

Q ss_pred             CEEEEEeCCCcEEEEECC--CCeeEEEecccCCceEEEEEecCCCEEEEEECCC------cEEEE-ECCCCceEEEeccC
Q 011457          230 TYMFSAGDDKQVKCWDLE--QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS------VCRVW-DIRTKMQIFALAGH  300 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg------~i~iw-d~~~~~~~~~~~~~  300 (485)
                      ..|+.+...+.|.+|++.  ..+....|. .-+.|..+.++..|++|++--.+.      .+|+| |.+..      ...
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~------~~~  101 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ------KEE  101 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh------ccc
Confidence            455555667889999998  335566665 448899999999999999875533      34443 22211      011


Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc
Q 011457          301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE  375 (485)
Q Consensus       301 ~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~  375 (485)
                      ..++..-..   | .-+.++..+..     ...-.+..+.. ..++.+++..|-.--|+.++.+.+.+|.+....
T Consensus       102 ~~~v~vRia---G-~~v~~~~~~~~-----~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~  166 (215)
T PF14761_consen  102 NSPVRVRIA---G-HRVTPSFNESS-----KDQLEIIELPL-SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT  166 (215)
T ss_pred             CCcEEEEEc---c-cccccCCCCcc-----ccceEEEEecC-CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence            122221000   1 01111111111     11112223333 557788888887777888888888888775443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.47  E-value=7.2  Score=41.33  Aligned_cols=111  Identities=8%  Similarity=0.080  Sum_probs=75.5

Q ss_pred             ceEEEEEcc--CCCEEEEEeCCCeEEEEECCC-------C----c---------eEEEEcccccCEEEEEEc--CCCCEE
Q 011457          177 WVRSVAFDH--SNTWFCTGSADRTIKIWDVAK-------G----T---------LKLTLTGHIEQVRGLAVS--SKHTYM  232 (485)
Q Consensus       177 ~V~~l~~sp--~~~~l~tgs~dg~I~iwd~~~-------~----~---------~~~~~~~h~~~V~~l~~s--~~~~~l  232 (485)
                      .|+.|....  +.+.|+.|..||.|.+|..++       .    +         +...+. -...+..++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            355554433  566899999999999997521       0    0         111222 23578899998  788899


Q ss_pred             EEEeCCCcEEEEECCCC--ee-EEEecccCCceEEEEEecCC---C---EEEEEECCCcEEEEEC
Q 011457          233 FSAGDDKQVKCWDLEQN--KV-IRSYHGHLSGVYCLGLHPTI---D---ILLTGGRDSVCRVWDI  288 (485)
Q Consensus       233 ~s~~~dg~V~iwd~~~~--~~-~~~~~~h~~~v~~l~~~~~~---~---~l~sg~~dg~i~iwd~  288 (485)
                      |+++....|.||-+...  +. ...-..+...|.+++|.++.   .   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99988888888865432  11 11112366778999998753   2   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.30  E-value=23  Score=33.47  Aligned_cols=184  Identities=15%  Similarity=0.224  Sum_probs=102.2

Q ss_pred             ceEEEEEccCCCEEE--EEeCC----------CeEEEEECCCCceEEEEcc------cccCEEEEEEcCCC-----CEEE
Q 011457          177 WVRSVAFDHSNTWFC--TGSAD----------RTIKIWDVAKGTLKLTLTG------HIEQVRGLAVSSKH-----TYMF  233 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~--tgs~d----------g~I~iwd~~~~~~~~~~~~------h~~~V~~l~~s~~~-----~~l~  233 (485)
                      .|..+...+++.+-+  +|..+          -.|.+||+.++++++++.-      ..+.+..+.+....     .+++
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            356677776666433  23211          2799999999998887653      24567888887632     2444


Q ss_pred             EE-eCCCcEEEEECCCCeeEEEeccc-------------------CCceEEEEEec---CCCEEEEEECCCcEEEEECCC
Q 011457          234 SA-GDDKQVKCWDLEQNKVIRSYHGH-------------------LSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRT  290 (485)
Q Consensus       234 s~-~~dg~V~iwd~~~~~~~~~~~~h-------------------~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~  290 (485)
                      .+ ...+-|.++|+.+++.-+.++.+                   ...+..++.+|   +++.|+-+...+. ++|.+.+
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEH
Confidence            44 34468999999998776655432                   12245555544   4445554443321 2232221


Q ss_pred             -----C---------ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-----eEEeEeccC-CCceEEEE
Q 011457          291 -----K---------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-----KTMLTLTHH-KKSVRAMA  350 (485)
Q Consensus       291 -----~---------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-----~~~~~~~~~-~~~v~~l~  350 (485)
                           .         ..+..+-........++++++|.++++--..+.|..|+....     ..+...... -..+.++.
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~  240 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK  240 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred             HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence                 0         011222111235667888899988889889999999998862     111111111 34678888


Q ss_pred             ECC--CCCEEEEE
Q 011457          351 LHP--TEDCFASA  361 (485)
Q Consensus       351 ~~p--~~~~l~~~  361 (485)
                      +.+  +|.+.+.+
T Consensus       241 i~~~~~g~L~v~s  253 (287)
T PF03022_consen  241 IDPEGDGYLWVLS  253 (287)
T ss_dssp             E-T--TS-EEEEE
T ss_pred             eccccCceEEEEE
Confidence            888  66655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=88.23  E-value=24  Score=35.51  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=22.5

Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          386 TIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       386 ~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      ..|..+...+.. .+++-..+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            347777777766 999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.94  E-value=27  Score=33.88  Aligned_cols=94  Identities=14%  Similarity=0.135  Sum_probs=43.7

Q ss_pred             CCCEEEEEeCC-CeEEEEECCCCc----eEEEEcccccCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCC
Q 011457          186 SNTWFCTGSAD-RTIKIWDVAKGT----LKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-----------KQVKCWDLEQN  249 (485)
Q Consensus       186 ~~~~l~tgs~d-g~I~iwd~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-----------g~V~iwd~~~~  249 (485)
                      ++...+.|+.. ..+.++|+....    .+..+... .........-++.+.+.|+.+           ..+..||..++
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~   95 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN   95 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence            45555556542 456777763221    11122110 111111122356666777653           25778898877


Q ss_pred             eeEEEecccCCceEEE-EE-ecCCCEEEEEECC
Q 011457          250 KVIRSYHGHLSGVYCL-GL-HPTIDILLTGGRD  280 (485)
Q Consensus       250 ~~~~~~~~h~~~v~~l-~~-~~~~~~l~sg~~d  280 (485)
                      +....-.......... .. .-++++.+.|+.+
T Consensus        96 ~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        96 SWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             EEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            6443321111111111 11 2467788888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.86  E-value=35  Score=34.99  Aligned_cols=145  Identities=13%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             EEEEE---eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc---cE
Q 011457          231 YMFSA---GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN---TV  304 (485)
Q Consensus       231 ~l~s~---~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---~v  304 (485)
                      +++..   ...+.+.++|.. |.+...+.........+...++|++++..+  ..+..+|+. |+.+........   .-
T Consensus       117 ~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H  192 (477)
T PF05935_consen  117 YFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH  192 (477)
T ss_dssp             EEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred             EEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence            44444   345677777754 566555542222211166778888776555  788888885 555544432221   12


Q ss_pred             EEEEEcCCCCEEEEEeC-------------CCCEEEEECCCCeEEeEecc--C----C---------------------C
Q 011457          305 CSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYGKTMLTLTH--H----K---------------------K  344 (485)
Q Consensus       305 ~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~~~~~~~~~--~----~---------------------~  344 (485)
                      ..+...|+|++|+.+..             .-.|..+| .+|+.+..+..  |    .                     -
T Consensus       193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~  271 (477)
T PF05935_consen  193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL  271 (477)
T ss_dssp             S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred             cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence            45667788998887772             12366666 66766554311  0    0                     1


Q ss_pred             ceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeee
Q 011457          345 SVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNM  380 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~  380 (485)
                      -+.++.+.+....|+.++...  |..+|..+++....+
T Consensus       272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence            378999998555555554443  888898888877665

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=87.86  E-value=26  Score=33.46  Aligned_cols=228  Identities=8%  Similarity=0.011  Sum_probs=112.0

Q ss_pred             CEEEEEeCCCcEEEEECCC--CeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCce-------------
Q 011457          230 TYMFSAGDDKQVKCWDLEQ--NKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQ-------------  293 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~-------------  293 (485)
                      ++|+.|+++|. .+.++..  ++..+.+  +...|+++...+..+.|++-+ ....++.+++..-..             
T Consensus        14 ~~lL~GTe~Gl-y~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       14 KWLLVGTEEGL-YVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             cEEEEEeCCce-EEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            68999999984 4555654  3344443  467899999999877666554 344599999843221             


Q ss_pred             --EEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCC----eEEeEe----ccCCCceEEEEECCC--CCEEEE
Q 011457          294 --IFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYG----KTMLTL----THHKKSVRAMALHPT--EDCFAS  360 (485)
Q Consensus       294 --~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~----~~~~~~----~~~~~~v~~l~~~p~--~~~l~~  360 (485)
                        ......+........+... ...++++....+|.++.....    .....+    .....++..+..+++  ...++.
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv  170 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI  170 (302)
T ss_pred             ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence              1112233333333333322 123445555667777644321    111110    011223333433333  557777


Q ss_pred             EcCC-CEEEEECCC--Cce----eeeeccCCc-ccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCC
Q 011457          361 ASAE-NIKKFNLPK--GEF----LHNMLSQQK-TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLD  432 (485)
Q Consensus       361 ~~~~-~i~i~d~~~--~~~----~~~~~~~~~-~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  432 (485)
                      |+.. +..++++..  ...    +........ .++....+..+.+|+ +-++ ...+-|......... ..      +.
T Consensus       171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~-~~v~Vn~~G~~~~r~-~~------l~  241 (302)
T smart00036      171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDE-FGVFVNLYGKRRSRN-PI------LH  241 (302)
T ss_pred             EEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECc-EEEEEeCCCCccccc-eE------EE
Confidence            7765 655555532  110    000011111 344444444443444 3333 344445432111111 00      11


Q ss_pred             CCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCC
Q 011457          433 SEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH  472 (485)
Q Consensus       433 ~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~  472 (485)
                      -.....++++.  ..+|+.-+. ..|.|+++.++....+.
T Consensus       242 w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i  278 (302)
T smart00036      242 WEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQEL  278 (302)
T ss_pred             cCCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEE
Confidence            23345667776  467777765 45999999988754443

Unpublished observations.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.70  E-value=6.1  Score=38.27  Aligned_cols=111  Identities=14%  Similarity=0.240  Sum_probs=59.0

Q ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEECCCCce---eeee---ccCCcccEEEEEeCCC----CeEEEEeCC---------
Q 011457          345 SVRAMALHPTEDCFASASAENIKKFNLPKGEF---LHNM---LSQQKTIINSMAVNEE----GVLATGGDN---------  405 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~---~~~~---~~~~~~~i~~~~~~~~----~~l~sg~~d---------  405 (485)
                      ..++|+|.|++.+|++--.+.|.+++ ..+..   +..+   ..........++++|+    ++|.+....         
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999998887755699998 44443   2221   2334566889999994    533333221         


Q ss_pred             CcEEEEeCCCC-cccccceeee--ccCCCCCCccEEEEEEccCCCEEEEEECCC
Q 011457          406 GSLWFWDWKSG-HNFQQAQTIV--QPGSLDSEAGIYALSYDVTGSRLVTCEADK  456 (485)
Q Consensus       406 g~I~iwd~~~~-~~~~~~~~~~--~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg  456 (485)
                      ..|.-|.+..+ ..+.....+.  .+........-..|.|.|||.+.++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            24444554443 1111111111  111112334456699999997777766543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.25  E-value=11  Score=35.43  Aligned_cols=113  Identities=13%  Similarity=0.152  Sum_probs=68.5

Q ss_pred             CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeeEEEecc-----cCCceEE
Q 011457          196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG------DDKQVKCWDLEQNKVIRSYHG-----HLSGVYC  264 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~------~dg~V~iwd~~~~~~~~~~~~-----h~~~v~~  264 (485)
                      -..|++||..+.+-...-.+-.+.|+.|.|..+.++++.|.      ....+..||+.+.... .+.+     -.++|..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence            35799999887776665556678899999997777776664      4567899998876542 2322     2467888


Q ss_pred             EEEec-CCC-EEEEEE-CCC--cEEEEECCCCceEEE-eccCCccEEEEEE
Q 011457          265 LGLHP-TID-ILLTGG-RDS--VCRVWDIRTKMQIFA-LAGHDNTVCSVFT  309 (485)
Q Consensus       265 l~~~~-~~~-~l~sg~-~dg--~i~iwd~~~~~~~~~-~~~~~~~v~~l~~  309 (485)
                      +.+.. ++. +.+.|. .+|  .|..||=.....+.. .......|..+.+
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            87754 333 444443 233  466666544443333 2222334544443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.25  E-value=18  Score=35.80  Aligned_cols=115  Identities=7%  Similarity=0.100  Sum_probs=75.7

Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-
Q 011457          216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR----SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-  290 (485)
Q Consensus       216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-  290 (485)
                      ..++|.++.|++|.+.|++--.|..|.+++....+...    +.+.....|..+.|..+. -++.....| +-+|-... 
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchh
Confidence            56799999999999999999999999999984333222    223344568889998763 455544444 55665543 


Q ss_pred             CceEEEeccCCccEEEEEEcCCCCEEEEEe--CCCCEEEEECCC
Q 011457          291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGS--HDSTIKFWDLRY  332 (485)
Q Consensus       291 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s--~dg~I~iwd~~~  332 (485)
                      ...++..+.|.-.|.-..|.++.+.++.++  ..+++.=+.+++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            334555566778888888888777654433  233444444443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=86.93  E-value=34  Score=33.81  Aligned_cols=94  Identities=15%  Similarity=0.074  Sum_probs=43.1

Q ss_pred             CCCEEEEEe-CCCeEEEEECCCC--ce--EEEEcccccCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCC
Q 011457          186 SNTWFCTGS-ADRTIKIWDVAKG--TL--KLTLTGHIEQVRGLAVSSKHTYMFSAGDD-----------KQVKCWDLEQN  249 (485)
Q Consensus       186 ~~~~l~tgs-~dg~I~iwd~~~~--~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-----------g~V~iwd~~~~  249 (485)
                      +++.++.|+ .+..+.++|+...  +.  +..+... .........-++.+.+.|+.+           ..+..||..++
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            455555444 3456778887532  11  1112111 111111122356666666643           24778898876


Q ss_pred             eeEEEecccCCce--EEEEEecCCCEEEEEECC
Q 011457          250 KVIRSYHGHLSGV--YCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       250 ~~~~~~~~h~~~v--~~l~~~~~~~~l~sg~~d  280 (485)
                      +....-.......  .+....-++.+.+.|+.+
T Consensus       117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131        117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             EEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            5444221111111  111221466777888764

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.68  E-value=30  Score=32.96  Aligned_cols=112  Identities=18%  Similarity=0.194  Sum_probs=75.5

Q ss_pred             EEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeeEEEecc--cC--------------------
Q 011457          220 VRGLAVSSKHTYMFSAG------------------DDKQVKCWDLEQNKVIRSYHG--HL--------------------  259 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~------------------~dg~V~iwd~~~~~~~~~~~~--h~--------------------  259 (485)
                      ...+.+.++|+.|++.-                  .|+.+.-.|+++++.+..+..  |-                    
T Consensus        59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~  138 (299)
T PF14269_consen   59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS  138 (299)
T ss_pred             ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence            44556667777666221                  256677778888888766531  10                    


Q ss_pred             -----CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc-cE----EEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          260 -----SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-TV----CSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       260 -----~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~v----~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                           --+.++....+|++|++.-.-..|.+.|-++++.+..+.+... ..    ...++..+-+++-.+..++.|.+||
T Consensus       139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence                 0166777788899999998899999999999999999976622 11    1244444444454556788999998


Q ss_pred             CC
Q 011457          330 LR  331 (485)
Q Consensus       330 ~~  331 (485)
                      -.
T Consensus       219 N~  220 (299)
T PF14269_consen  219 NA  220 (299)
T ss_pred             CC
Confidence            63

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.62  E-value=27  Score=32.38  Aligned_cols=228  Identities=16%  Similarity=0.100  Sum_probs=135.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-EEe-
Q 011457          220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-FAL-  297 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~-  297 (485)
                      -..++-.+||..-+++...+.|--.|..+|+....--+....-..+..-|||..-++-+.. -|.-.|-++.+.. ..+ 
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp  142 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP  142 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence            3456777888888888878888888888888766655555566677778887765554433 4444555444321 111 


Q ss_pred             -ccCCccEEEEEEcCCCCEEEEEeCC---------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-E
Q 011457          298 -AGHDNTVCSVFTRPTDPQVVTGSHD---------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-I  366 (485)
Q Consensus       298 -~~~~~~v~~l~~~~~~~~l~s~s~d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i  366 (485)
                       +.-........|.+.|++-+++...         +.|++|+.-          ....-+.|+..|+|...++.-.++ |
T Consensus       143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagnai  212 (353)
T COG4257         143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGNAI  212 (353)
T ss_pred             cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccccce
Confidence             2234466778889888887776531         234444432          234567889999999777766655 8


Q ss_pred             EEEECCCCceeeeec-cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457          367 KKFNLPKGEFLHNML-SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       367 ~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                      ...|-..+....... .........+..++-+ .-++-...|.+..||-.+..    ......+++   +..-.++..+.
T Consensus       213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s----W~eypLPgs---~arpys~rVD~  285 (353)
T COG4257         213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS----WIEYPLPGS---KARPYSMRVDR  285 (353)
T ss_pred             EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc----ceeeeCCCC---CCCcceeeecc
Confidence            888877663221111 1112334556666777 55666667888888865432    333333332   33345566666


Q ss_pred             CCCEEEEEECCCcEEEecCCC
Q 011457          445 TGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       445 ~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      .|+.-.+--.-|.|.-+|-.+
T Consensus       286 ~grVW~sea~agai~rfdpet  306 (353)
T COG4257         286 HGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             CCcEEeeccccCceeecCccc
Confidence            665554444445555555443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.03  E-value=4.2  Score=42.51  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=45.2

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC----CeeEEEe--cc--------------------cCCceEEEEEec----CCCEEEE
Q 011457          227 SKHTYMFSAGDDKQVKCWDLEQ----NKVIRSY--HG--------------------HLSGVYCLGLHP----TIDILLT  276 (485)
Q Consensus       227 ~~~~~l~s~~~dg~V~iwd~~~----~~~~~~~--~~--------------------h~~~v~~l~~~~----~~~~l~s  276 (485)
                      ++...++.+..||.+.......    +......  ..                    ....+..++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667788888999888887764    2211111  10                    123455666666    6679999


Q ss_pred             EECCCcEEEEECCCCceEEEe
Q 011457          277 GGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       277 g~~dg~i~iwd~~~~~~~~~~  297 (485)
                      .+.|+++++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	485
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-30
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-29
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-29
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-28
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-28
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-28
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-28
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-28
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-28
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-28
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-28
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-28
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-28
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-28
2h9l_A	329	Wdr5delta23 Length = 329		7e-28
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-27
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-26
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-26
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-24
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-20
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		9e-19
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-18
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-18
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-18
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-17
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-17
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-16
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-12
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-16
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-15
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-15
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-15
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-15
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-15
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-12
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-14
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-14
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-09
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-14
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-13
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-14
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-14
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-14
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-14
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-14
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-13
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-11
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-13
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		8e-11
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-13
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		8e-11
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-13
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-13
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-10
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-13
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-13
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-13
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-13
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-12
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-12
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-12
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-11
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-10
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		6e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-10
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-10
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-10
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-10
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		9e-10
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-09
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-09
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		8e-09
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-06
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		3e-08
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		1e-06
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-06
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-06
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		7e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		4e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		8e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		4e-04
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		5e-04
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		5e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 15/305 (4%)
Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
           W+   +  + ++GH   V  VAF        + S D+T+K+W+   G L  TLTGH   V
Sbjct: 43  WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 101
Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
           RG+A S     + SA DDK VK W+    +++++  GH S V+ +   P    + +   D
Sbjct: 102 RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
              ++W+ R    +  L GH ++V  V   P    + + S D T+K W+ R G+ + TLT
Sbjct: 161 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 218
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL 399
            H  SVR +A  P     ASAS +   K     G+ L   L+   + +N +A   +G  +
Sbjct: 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVNGVAFRPDGQTI 277
Query: 400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
           A+  D+ ++  W+     N Q  QT+    S      ++ +++   G  + +   DKT+K
Sbjct: 278 ASASDDKTVKLWN----RNGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVK 328
Query: 460 MWRED 464
           +W  +
Sbjct: 329 LWNRN 333

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 19/273 (6%)
Query: 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID 272
           L  H   VRG+A S     + SA DDK VK W+    +++++  GH S V+ +   P   
Sbjct: 12  LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 273 ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332
            + +   D   ++W+ R    +  L GH ++V  V   P    + + S D T+K W+ R 
Sbjct: 71  TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 128
Query: 333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA 392
           G+ + TLT H  SV  +A  P     ASAS +   K     G+ L  +     ++     
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 188
Query: 393 VNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC 452
             +   +A+  D+ ++  W+     N Q  QT+    S      +  +++   G  + + 
Sbjct: 189 SPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSS-----SVRGVAFSPDGQTIASA 239
Query: 453 EADKTIKMWRED----ETATPETHPLN---FKP 478
             DKT+K+W  +    +T T  +  +N   F+P
Sbjct: 240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP 272

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
            M +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 202 KFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 311
Query: 462 RED 464
           + D
Sbjct: 312 KSD 314

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
            M +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 311
Query: 462 RED 464
           + D
Sbjct: 312 KSD 314

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 221 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 281 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 330
Query: 462 RED 464
           + D
Sbjct: 331 KSD 333

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 222
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 223 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 282
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 283 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 332
Query: 462 RED 464
           + D
Sbjct: 333 KSD 335

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 314
Query: 462 RED 464
           + D
Sbjct: 315 KSD 317

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 314
Query: 462 RED 464
           + D
Sbjct: 315 KSD 317

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 314
Query: 462 RED 464
           + D
Sbjct: 315 KSD 317

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 199
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 200 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 259
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 260 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 309
Query: 462 RED 464
           + D
Sbjct: 310 KSD 312

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 194
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 195 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 254
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 255 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 304
Query: 462 RED 464
           + D
Sbjct: 305 KSD 307

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 308
Query: 462 RED 464
           + D
Sbjct: 309 KSD 311

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 203
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 204 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 263
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 264 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 313
Query: 462 RED 464
           + D
Sbjct: 314 KSD 316

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 308
Query: 462 RED 464
           + D
Sbjct: 309 KSD 311

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  122 bits (305), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 197
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 198 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 257
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 258 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 307
Query: 462 RED 464
           + D
Sbjct: 308 KSD 310

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 215
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 216 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 275
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 276 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 325
Query: 462 RED 464
           + D
Sbjct: 326 KSD 328

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W    SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK+W
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLW 311
Query: 462 RED 464
           + D
Sbjct: 312 KSD 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK++
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLY 311
Query: 462 RED 464
           + D
Sbjct: 312 KSD 314

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           ++GH   V SV F  +  W  + SAD+ IKIW    G  + T++GH   +  +A SS   
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
            + SA DDK +K WD+   K +++  GH + V+C   +P  +++++G  D   R+WD++T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAM 349
              +  L  H + V +V        +V+ S+D   + WD   G+ + TL       V  +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEGVLATGGDN 405
              P      +A+ +N +K ++  KG+ L       +++  I  + +V     + +G ++
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 406 GSLWFWDWKSGHNFQQAQ----TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
             ++ W+ ++    Q+ Q     ++      +E  I + +           E DKTIK++
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL----------ENDKTIKLF 311
Query: 462 RED 464
           + D
Sbjct: 312 KSD 314

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 142/311 (45%), Gaps = 21/311 (6%)
Query: 151 RIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK 210
           RI + W R E  +P    +V+ GH   V +           +GS D T+K+W    G   
Sbjct: 98  RIDTNWRRGELKSP----KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL 152
Query: 211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT 270
            TL GH   V   +   +   + S   D+ +K W+ E  + I + +GH S V C+ LH  
Sbjct: 153 RTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE- 209
Query: 271 IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL 330
              +++G RD+  RVWDI T   +  L GH   V  V  +    +VV+G++D  +K WD 
Sbjct: 210 -KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDP 266
Query: 331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINS 390
                + TL  H   V ++          S    +I+ +++  G  +H +   Q ++ + 
Sbjct: 267 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQ-SLTSG 324
Query: 391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLV 450
           M + ++ +L +G  + ++  WD K+G   Q  Q     G    ++ +  L ++   + ++
Sbjct: 325 MEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQ-----GPNKHQSAVTCLQFN--KNFVI 376
Query: 451 TCEADKTIKMW 461
           T   D T+K+W
Sbjct: 377 TSSDDGTVKLW 387

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 38/335 (11%)
Query: 150 ERIPSKW-PRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
           +R P +W PRP    P K    +SGH   V  V F    +   + S D TIK+WD   G 
Sbjct: 88  KRDPKEWIPRP----PEK--YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
            + TL GH + V+ ++       + S   D  +K WD +  + IR+ HGH   V  + + 
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
           P  D +++  RD   ++W+++T   +    GH   V  V        + + S+D T++ W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA----------------------ENI 366
            +   +    L  H+  V  ++  P E  ++S S                       + I
Sbjct: 262 VVATKECKAELREHRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 367 KKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIV 426
           K +++  G  L  ++     +   +  +    + +  D+ +L  WD+K+    +      
Sbjct: 321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-- 378
Query: 427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
                  E  + +L +  T   +VT   D+T+K+W
Sbjct: 379 ------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 8/236 (3%)
Query: 157 PRPEWHAPWKCY----RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT 212
           P P+ H+    Y    R + GH  +V  VA  ++  +  + S D ++++W++  G  +  
Sbjct: 45  PNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK 104
Query: 213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPTI 271
             GH + V  +A S  +  + S G D  ++ W+++   +   S   H   V C+   P++
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 272 D--ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
           D  ++++GG D++ +VWD+ T   +  L GH N V SV   P      +   D   + WD
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQK 385
           L  G+ +  +      +  +   P      +A+ + I+ F+L   + +  +  + +
Sbjct: 225 LTKGEALSEMA-AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQ 279

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 136/318 (42%), Gaps = 29/318 (9%)
Query: 171 ISGHLGWVRSVAFDHS---NTWFCTGSADRTIKIW---------DVAKGTLKLTLTGHIE 218
           ++GH GWV S+A   +    T   + S D+T+  W         + + G     L GH  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG 278
            V  +A+S+   +  SA  D  ++ W+L+  +    + GH   V  +   P    +++GG
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 279 RDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKT 335
           RD+  RVW+++ + M   +   H + V  V   P+   P +V+G  D+ +K WDL  G+ 
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 336 MLTLTHHKKSVRAMALHPTEDCFASASAENIKK-FNLPKGEFLHNMLSQQKTIINSMAVN 394
           +  L  H   V ++ + P     AS+  + + + ++L KGE L  M +     IN +  +
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP--INQICFS 246
Query: 395 EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQ-----PGSLDSEAGIYALSYDVTGSRL 449
                        +  +D       +    IV+      GS        ++++   GS L
Sbjct: 247 PNRYWMCAATEKGIRIFD------LENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTL 300
Query: 450 VTCEADKTIKMWREDETA 467
            +   D  I++W   E A
Sbjct: 301 YSGYTDNVIRVWGVSENA 318

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 8/237 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
           VR+  F     W   GS D  I++++   G   +    H + +R +AV     Y+ S  D
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 238 DKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF 295
           D  VK W+ E N  + +++ GH   V C+  +P       +G  D   +VW +      F
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 296 AL-AGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
            L  G +  V  V  +  P  P ++T S D TIK WD +    + TL  H  +V     H
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 353 PTEDCFASASAENIKKF---NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
           PT     S S +   K    +  K E   N+  ++   I +     +  +A+G DNG
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 8/237 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
           VR+  F     W   GS D  I++++   G   +    H + +R +AV     Y+ S  D
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 238 DKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF 295
           D  VK W+ E N  + +++ GH   V C+  +P       +G  D   +VW +      F
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 296 AL-AGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
            L  G +  V  V  +  P  P ++T S D TIK WD +    + TL  H  +V     H
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 353 PTEDCFASASAENIKKF---NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
           PT     S S +   K    +  K E   N+  ++   I +     +  +A+G DNG
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 8/237 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
           VR+  F     W   GS D  I++++   G   +    H + +R +AV     Y+ S  D
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 238 DKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF 295
           D  VK W+ E N  + +++ GH   V C+  +P       +G  D   +VW +      F
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 296 AL-AGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
            L  G +  V  V  +  P  P ++T S D TIK WD +    + TL  H  +V     H
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 353 PTEDCFASASAENIKKF---NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
           PT     S S +   K    +  K E   N+  ++   I +     +  +A+G DNG
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 8/237 (3%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
           VR+  F     W   GS D  I++++   G   +    H + +R +AV     Y+ S  D
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 238 DKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIF 295
           D  VK W+ E N  + +++ GH   V C+  +P       +G  D   +VW +      F
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 296 AL-AGHDNTVCSV--FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
            L  G +  V  V  +  P  P ++T S D TIK WD +    + TL  H  +V     H
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 353 PTEDCFASASAENIKKF---NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
           PT     S S +   K    +  K E   N+  ++   I +     +  +A+G DNG
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 21/259 (8%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
           +C R+++GH G V  + +D       TGS+D T+++WDV  G +  TL  H E V  L +
Sbjct: 164 ECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHL 219
Query: 226 SSKHTYMFSAGDDKQVKCWDLEQNKVI---RSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282
              +  M +   D+ +  WD+     I   R   GH + V  +       +  +G  D  
Sbjct: 220 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRT 277
Query: 283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH 342
            +VW+  T   +  L GH   +  +  R  D  VV+GS D+TI+ WD+  G  +  L  H
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH 335
Query: 343 KKSVRAMALHPTEDCFASASAENIKKFNL--------PKGEFLHNMLSQQKTIINSMAVN 394
           ++ VR +     +   + A    IK ++L        P G      L +    +  +  +
Sbjct: 336 EELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 394
Query: 395 EEGVLATGGDNGSLWFWDW 413
           E  ++++  D+ ++  WD+
Sbjct: 395 EFQIVSSSHDD-TILIWDF 412

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 17/275 (6%)
Query: 192 TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV 251
           +G  D TIKIWD      K  LTGH   V  L +      + +   D  V+ WD+   ++
Sbjct: 148 SGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEM 205
Query: 252 IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF---ALAGHDNTVCSVF 308
           + +   H   V  L L     +++T  +D    VWD+ +   I     L GH   V  V 
Sbjct: 206 LNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV- 262
Query: 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IK 367
               D  +V+ S D TIK W+    + + TL  HK+ +    L   +    S S++N I+
Sbjct: 263 -DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIR 319
Query: 368 KFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ-AQTIV 426
            +++  G  L  +L   + ++  +  + + ++ +G  +G +  WD  +  + +  A T+ 
Sbjct: 320 LWDIECGACLR-VLEGHEELVRCIRFDNKRIV-SGAYDGKIKVWDLVAALDPRAPAGTLC 377
Query: 427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
               ++    ++ L +D    ++V+   D TI +W
Sbjct: 378 LRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 410

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 261 GVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS 320
           GVYCL        +++G RD+  ++WD  T      L GH  +V  +  +  +  ++TGS
Sbjct: 135 GVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QYDERVIITGS 190
Query: 321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNL--PKGEFL 377
            DST++ WD+  G+ + TL HH ++V  + L        + S + +I  +++  P    L
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 378 HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI 437
             +L   +  +N +  +++ +++  GD  ++  W+  +    +             + GI
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDR-TIKVWNTSTCEFVRTLN--------GHKRGI 299
Query: 438 YALSYDVTGSRLVTCEADKTIKMW 461
             L Y      +V+  +D TI++W
Sbjct: 300 ACLQY--RDRLVVSGSSDNTIRLW 321

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 119/290 (41%), Gaps = 43/290 (14%)
Query: 174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-------------- 219
           H   V  V F +   +  TG  ++T +++ V+ G+L   L+                   
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 220 ----VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL 275
               +R +  S    ++ +  +D+ ++ WD+E  K++    GH   +Y L   P+ D L+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 276 TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ-VVTGSHDSTIKFWDLRYGK 334
           +G  D   R+WD+RT      L+  D  V +V   P D + +  GS D  ++ WD   G 
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 335 TMLTL-------THHKKSVRAMALHPTEDCFASASAE-NIKKFNL-----------PKGE 375
            +  L       T HK SV ++          S S + ++K +NL           P   
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 376 FLHNMLSQQKTIINSMAV--NEEGVLATGGDNGSLWFWDWKSGHNFQQAQ 423
                    K  + S+A   N+E +L+   D G L FWD KSG+     Q
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL-FWDKKSGNPLLMLQ 349

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360
           D  + SV   P    + TG+ D  I+ WD+   K ++ L  H++ + ++   P+ D   S
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 361 ASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF 419
            S +  ++ ++L  G+    +  +      +++  +   +A G  + ++  WD ++G   
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
           ++  +  + G+   ++ +Y++ +   G  +V+   D+++K+W
Sbjct: 243 ERLDSENESGTGHKDS-VYSVVFTRDGQSVVSGSLDRSVKLW 283

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 6/199 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           + ++ H  ++ + +F +S+    T S D T  +WDV  G L  +  GH   V  L ++  
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 229 HT--YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286
            T     S G DK+   WD+   + ++++  H S V  +  +P+ D   +G  D+ CR++
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 287 DIRTKMQIFALAGHDNTV---CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
           D+R   ++ A+   ++ +    SV    +   +  G +D TI  WD+  G  +  L  H+
Sbjct: 268 DLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326
Query: 344 KSVRAMALHPTEDCFASAS 362
             V  + + P    F S S
Sbjct: 327 NRVSTLRVSPDGTAFCSGS 345

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 23/263 (8%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
           TL GH  +V  +        + S+  D +V  WD        +     + V      P+ 
Sbjct: 59  TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 272 DILLTGGRDSVCRVW----DIRTKM--QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
             +  GG D+ C V+    D    M  +  ++A H N + +     +D Q++T S D T 
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTE--DCFASASAE-NIKKFNLPKGEFLHNMLS 382
             WD+  G+ + +   H   V  + L P+E  + F S   +     +++  G+ +     
Sbjct: 179 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ-AFE 237
Query: 383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN---FQQAQTIVQPGSLDSEAGIY 438
             ++ +NS+     G   A+G D+ +   +D ++      + +   I    S+D      
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD------ 291
Query: 439 ALSYDVTGSRLVTCEADKTIKMW 461
              + ++G  L     D TI +W
Sbjct: 292 ---FSLSGRLLFAGYNDYTINVW 311

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 172  SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY 231
            +GH   ++   F   +       +   +++W++          GH+  V G+  S   + 
Sbjct: 844  TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 903
Query: 232  MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
              +A DD+ ++ W  E  KV ++          + L   ID++       V  V +IR  
Sbjct: 904  FLTASDDQTIRVW--ETKKVCKN--------SAIVLKQEIDVVFQENETMVLAVDNIRGL 953
Query: 292  MQIFALAGH-----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346
              I    G      +  V      P    V  G  D  IK  +L   +   +   HKK+V
Sbjct: 954  QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1013
Query: 347  RAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDN 405
            R +          S+S ++ I+ +N   G+++  + + Q+T+ +   + +  +L+   D 
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFD- 1071
Query: 406  GSLWFWDWKSG---HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
            G++  W+  +G    +F   Q  V   ++ S+A           ++  +  ADKT K+W 
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDA-----------TKFSSTSADKTAKIWS 1120
Query: 463  ED 464
             D
Sbjct: 1121 FD 1122

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 10/190 (5%)
Query: 278 GRDSVCRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336
           G D   +V+   T  ++  +  H D  +C  F+   D  + T S D  +K WD   GK +
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLV 699
Query: 337 LTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAV 393
            T   H + V         +    A+  N   +K ++L + E  + M     ++ +    
Sbjct: 700 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 759
Query: 394 NEEGVLATGGDNGSLWFWDWKSGH-----NFQQAQTIVQPGSLDSEAGIYALSYDVTGSR 448
            ++ +LA+   +G+L  WD +S +     N ++     +    D E  +   S+   G +
Sbjct: 760 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 819
Query: 449 LVTCEADKTI 458
           ++    +K +
Sbjct: 820 IIVAAKNKVL 829

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 172  SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY 231
            +GH   ++   F   +       +   +++W++          GH+  V G+  S   + 
Sbjct: 837  TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896
Query: 232  MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
              +A DD+ ++ W  E  KV ++          + L   ID++       V  V +IR  
Sbjct: 897  FLTASDDQTIRVW--ETKKVCKN--------SAIVLKQEIDVVFQENETMVLAVDNIRGL 946
Query: 292  MQIFALAGH-----DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV 346
              I    G      +  V      P    V  G  D  IK  +L   +   +   HKK+V
Sbjct: 947  QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006
Query: 347  RAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDN 405
            R +          S+S ++ I+ +N   G+++  + + Q+T+ +   + +  +L+   D 
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFD- 1064
Query: 406  GSLWFWDWKSG---HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
            G++  W+  +G    +F   Q  V   ++ S+A           ++  +  ADKT K+W 
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDA-----------TKFSSTSADKTAKIWS 1113
Query: 463  ED 464
             D
Sbjct: 1114 FD 1115

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 10/190 (5%)
Query: 278 GRDSVCRVWDIRTKMQIFALAGH-DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336
           G D   +V+   T  ++  +  H D  +C  F+   D  + T S D  +K WD   GK +
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLV 692
Query: 337 LTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMAV 393
            T   H + V         +    A+  N   +K ++L + E  + M     ++ +    
Sbjct: 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752
Query: 394 NEEGVLATGGDNGSLWFWDWKSGH-----NFQQAQTIVQPGSLDSEAGIYALSYDVTGSR 448
            ++ +LA+   +G+L  WD +S +     N ++     +    D E  +   S+   G +
Sbjct: 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812
Query: 449 LVTCEADKTI 458
           ++    +K +
Sbjct: 813 IIVAAKNKVL 822

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 35/287 (12%)
Query: 152 IPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL 211
           I   W  P++  P +    + GH+  V +      + +  TG+ D+ I+++D       L
Sbjct: 101 ILKNWYNPKF-VPQRT--TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLL 156
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGL--HP 269
            L+GH   V  L  +     + S   D+ V+ WD+++      + GH S V CL +  + 
Sbjct: 157 QLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 270 TIDILLTGGRDSVCRVWDI-----------------------RTKMQIFALAGHDNTVCS 306
            I  ++TG RD+   VW +                            +  L GH  +V +
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 307 VFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMAL-HPTEDCFASASAEN 365
           V        VV+GS+D+T+  WD+   K +  L+ H   + +    H  + C +++    
Sbjct: 276 VSGHGN--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD 412
           I+ ++L  GE ++ +  Q  T +  +    +  L +   +GS+  WD
Sbjct: 334 IRIWDLENGELMYTL--QGHTALVGLLRLSDKFLVSAAADGSIRGWD 378

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 12/220 (5%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R ++GH  +V  V       +  +GS D  +++WD+A G       GH + V  +A S  
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 229 HTYMFSAGDDKQVKCWD-LEQNKVIRSY--HGHLSGVYCL-----GLHPTIDILLTGGRD 280
           +  + SA  D+ +K W+ L + K   S    GH   V C+      L PTI   ++   D
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI---VSASWD 540
Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT 340
              +VW++        LAGH   V +V   P      +G  D  +  WDL  GK + +L 
Sbjct: 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL- 599
Query: 341 HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNM 380
                + A+   P      +A+   IK ++L     + ++
Sbjct: 600 EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDL 639

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 127/302 (42%), Gaps = 40/302 (13%)
Query: 190 FCTGSADRTIKIW-----DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW 244
             + S D++I +W     D A G  +  LTGH   V  + +SS   +  S   D +++ W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA----GH 300
           DL      R + GH   V  +        +++  RD   ++W+   + + + ++    GH
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGH 516
Query: 301 DNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF 358
            + V  V   P    P +V+ S D T+K W+L   K   TL  H   V  +A+ P     
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 359 ASASAENIKKF-NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGH 417
           AS   + +    +L +G+ L+++  +  ++I+++  +             +  WD +S  
Sbjct: 577 ASGGKDGVVLLWDLAEGKKLYSL--EANSVIHALCFSPNRYWLCAATEHGIKIWDLES-- 632
Query: 418 NFQQAQTIVQPGSLDSEAG----------------IY--ALSYDVTGSRLVTCEADKTIK 459
                ++IV+   +D +A                 IY  +L++   GS L +   D  I+
Sbjct: 633 -----KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687
Query: 460 MW 461
           +W
Sbjct: 688 VW 689

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 5/227 (2%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R + GH  +V  V       +  +GS D T+++WD+  GT      GH + V  +A SS 
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 229 HTYMFSAGDDKQVKCWD-LEQNKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVCRV 285
           +  + S   DK +K W+ L   K       H   V C+   P     I+++ G D + +V
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
           W++          GH   + +V   P      +G  D     WDL  GK + TL      
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDI 235
Query: 346 VRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA 392
           + A+   P      +A+  +IK ++L +G+ + + L Q+    +S A
Sbjct: 236 INALCFSPNRYWLCAATGPSIKIWDL-EGKIIVDELKQEVISTSSKA 281

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 13/303 (4%)
Query: 171 ISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAK-----GTLKLTLTGHIEQVRGLA 224
           + GH GWV  +A          + S D+TI +W + +     G  +  L GH   V  + 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
           +SS   +  S   D  ++ WDL      R + GH   V  +        +++G RD   +
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 285 VWDIR--TKMQIFALAGHDNTVCSVFT-RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
           +W+     K  +   +  +   C  F+   ++P +V+   D  +K W+L   K       
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 342 HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
           H   +  + + P     AS   +     ++L +G+ L+ +      IIN++  +      
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPNRYWL 248
Query: 401 TGGDNGSLWFWDWKSGHNFQQ-AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
                 S+  WD +      +  Q ++   S        +L++   G  L     D  ++
Sbjct: 249 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 460 MWR 462
           +W+
Sbjct: 309 VWQ 311

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 5/227 (2%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R + GH  +V  V       +  +GS D T+++WD+  GT      GH + V  +A SS 
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 229 HTYMFSAGDDKQVKCWD-LEQNKVIRSYHGHLSGVYCLGLHPTID--ILLTGGRDSVCRV 285
           +  + S   DK +K W+ L   K       H   V C+   P     I+++ G D + +V
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
           W++          GH   + +V   P      +G  D     WDL  GK + TL      
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDI 258
Query: 346 VRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMA 392
           + A+   P      +A+  +IK ++L +G+ + + L Q+    +S A
Sbjct: 259 INALCFSPNRYWLCAATGPSIKIWDL-EGKIIVDELKQEVISTSSKA 304

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 13/303 (4%)
Query: 171 ISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAK-----GTLKLTLTGHIEQVRGLA 224
           + GH GWV  +A          + S D+TI +W + +     G  +  L GH   V  + 
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
           +SS   +  S   D  ++ WDL      R + GH   V  +        +++G RD   +
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 285 VWDIR--TKMQIFALAGHDNTVCSVFT-RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
           +W+     K  +   +  +   C  F+   ++P +V+   D  +K W+L   K       
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 342 HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
           H   +  + + P     AS   +     ++L +G+ L+ +      IIN++  +      
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPNRYWL 271
Query: 401 TGGDNGSLWFWDWKSGHNFQQ-AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
                 S+  WD +      +  Q ++   S        +L++   G  L     D  ++
Sbjct: 272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 460 MWR 462
           +W+
Sbjct: 332 VWQ 334

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
           +SGH G V ++ + H      +GS DRT+++WD+ KG       GH   VR L +     
Sbjct: 158 LSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 231 --YMFSAGDDKQVKCWDL----------EQNKVIRSYH-------------GHLSGVYCL 265
             Y+ +   D  +  W L          E++     +H             GH + V  +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 266 GLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
             H   +I+++G  D+   VWD+     ++ L+GH + + S        + ++ S D+TI
Sbjct: 277 SGHG--NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364
           + WDL  G+   TL  H   V  + L  ++    SA+A+
Sbjct: 335 RIWDLENGELXYTLQGHTALVGLLRL--SDKFLVSAAAD 371

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 31/252 (12%)
Query: 187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246
           + +  TG+ D+ I+++D       L L+GH   V  L  +     + S   D+ V+ WD+
Sbjct: 132 DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 190
Query: 247 EQNKVIRSYHGHLSGVYCLGL--HPTIDILLTGGRDSVCRVWDI---------------- 288
           ++      + GH S V CL +  +  I  ++TG RD+   VW +                
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 289 -------RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
                       +  L GH  +V +V        VV+GS+D+T+  WD+   K +  L+ 
Sbjct: 251 LVFHTPEENPYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYILSG 308
Query: 342 HKKSVRAMAL-HPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA 400
           H   + +    H  + C +++    I+ ++L  GE  + +  Q  T +  +    +  L 
Sbjct: 309 HTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL--QGHTALVGLLRLSDKFLV 366
Query: 401 TGGDNGSLWFWD 412
           +   +GS+  WD
Sbjct: 367 SAAADGSIRGWD 378

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 32/254 (12%)
Query: 210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP 269
           + TL GH   V    +  +  Y+ +  DDK ++ +D    K +    GH  GV+ L  + 
Sbjct: 114 RTTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK-YA 171
Query: 270 TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV--CSVFTRPTDPQVVTGSHDSTIKF 327
              IL++G  D   RVWDI+         GH++TV    +        +VTGS D+T+  
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTI 387
           W L   K      H ++    +  H  E+                   +   +L      
Sbjct: 232 WKL--PKESSVPDHGEEHDYPLVFHTPEE-----------------NPYFVGVLRGHXAS 272
Query: 388 INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS 447
           + +++     ++ +G  + +L  WD       Q     +  G  D    IY+  YD    
Sbjct: 273 VRTVS-GHGNIVVSGSYDNTLIVWDVA-----QXKCLYILSGHTDR---IYSTIYDHERK 323
Query: 448 RLVTCEADKTIKMW 461
           R ++   D TI++W
Sbjct: 324 RCISASXDTTIRIW 337

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R   GH   V+         +  + S D+T+++WDVA G       GH   V  + +  K
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
            + + S   DK +K W + + + + +  GH   V  + + P          +++ G D +
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
            + W++  + QI A   GH++ + ++   P    + +   D  I  W+L   K M TL+ 
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
             + V ++A  P     A+A+A  IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R   GH   V+         +  + S D+T+++WDVA G       GH   V  + +  K
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
            + + S   DK +K W + + + + +  GH   V  + + P          +++ G D +
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
            + W++  + QI A   GH++ + ++   P    + +   D  I  W+L   K M TL+ 
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
             + V ++A  P     A+A+A  IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R   GH   V+         +  + S D+T+++WDVA G       GH   V  + +  K
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
            + + S   DK +K W + + + + +  GH   V  + + P          +++ G D +
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
            + W++  + QI A   GH++ + ++   P    + +   D  I  W+L   K M TL+ 
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
             + V ++A  P     A+A+A  IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R   GH   V+         +  + S D+T+++WDVA G       GH   V  + +  K
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
            + + S   DK +K W + + + + +  GH   V  + + P          +++ G D +
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
            + W++  + QI A   GH++ + ++   P    + +   D  I  W+L   K M TL+ 
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
             + V ++A  P     A+A+A  IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R   GH   V+         +  + S D+T+++WDVA G       GH   V  + +  K
Sbjct: 53  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
            + + S   DK +K W + + + + +  GH   V  + + P          +++ G D +
Sbjct: 113 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
            + W++  + QI A   GH++ + ++   P    + +   D  I  W+L   K M TL+ 
Sbjct: 172 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
             + V ++A  P     A+A+A  IK F+L
Sbjct: 231 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 259

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 7/217 (3%)
Query: 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
           ++ I S +         +  R ++GH G++    F   N    T S D T  +WD+  G 
Sbjct: 128 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ 186
Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
              T TGH   V  L+++       S   D   K WD+ +    +++ GH S +  +   
Sbjct: 187 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 246
Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTI 325
           P  +   TG  D+ CR++D+R   ++   + HDN +C   SV    +   ++ G  D   
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNC 305
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS 362
             WD         L  H   V  + +  T+D  A A+
Sbjct: 306 NVWDALKADRAGVLAGHDNRVSCLGV--TDDGMAVAT 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 10/252 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R + GHL  + ++ +   +    + S D  + IWD         +      V   A +  
Sbjct: 60  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 229 HTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
             Y+   G D     ++L+      +V R   GH   + C        I+ + G D+ C 
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 178
Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344
           +WDI T  Q     GH   V S+   P     V+G+ D++ K WD+R G    T T H+ 
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 345 SVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTI--INSMAVNEEG-VLA 400
            + A+   P  + FA+ S +   + F+L   + L    S    I  I S++ ++ G +L 
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLL 297
Query: 401 TGGDNGSLWFWD 412
            G D+ +   WD
Sbjct: 298 AGYDDFNCNVWD 309

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
           TL GH+ ++  +   +    + SA  D ++  WD      + +     S V      P+ 
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
           + +  GG D++C +++++T+         LAGH   + C  F    D Q+VT S D+T  
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 178
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
            WD+  G+   T T H   V +++L P    F S + +   K    +        +  ++
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
            IN++     G   ATG D+ +   +D ++    Q+  T      +    GI ++S+  +
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 292
Query: 446 GSRLVTCEADKTIKMW 461
           G  L+    D    +W
Sbjct: 293 GRLLLAGYDDFNCNVW 308

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 7/197 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R ++GH G++    F   N    T S D T  +WD+  G    T TGH   V  L+++  
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
                S   D   K WD+ +    +++ GH S +  +   P  +   TG  D+ CR++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 289 RTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
           R   ++   + HDN +C   SV    +   ++ G  D     WD         L  H   
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 346 VRAMALHPTEDCFASAS 362
           V  + +  T+D  A A+
Sbjct: 315 VSCLGV--TDDGMAVAT 329

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
           TL GH+ ++  +   +    + SA  D ++  WD      + +     S V      P+ 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
           + +  GG D++C +++++T+         LAGH   + C  F    D Q+VT S D+T  
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 167
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
            WD+  G+   T T H   V +++L P    F S + +   K    +        +  ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
            IN++     G   ATG D+ +   +D ++    Q+  T      +    GI ++S+  +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 281
Query: 446 GSRLVTCEADKTIKMW 461
           G  L+    D    +W
Sbjct: 282 GRLLLAGYDDFNCNVW 297

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 7/197 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R ++GH G++    F   N    T S D T  +WD+  G    T TGH   V  L+++  
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
                S   D   K WD+ +    +++ GH S +  +   P  +   TG  D+ CR++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 289 RTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
           R   ++   + HDN +C   SV    +   ++ G  D     WD         L  H   
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 346 VRAMALHPTEDCFASAS 362
           V  + +  T+D  A A+
Sbjct: 315 VSCLGV--TDDGMAVAT 329

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
           TL GH+ ++  +   +    + SA  D ++  WD      + +     S V      P+ 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
           + +  GG D++C +++++T+         LAGH   + C  F    D Q+VT S D+T  
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 167
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
            WD+  G+   T T H   V +++L P    F S + +   K    +        +  ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
            IN++     G   ATG D+ +   +D ++    Q+  T      +    GI ++S+  +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 281
Query: 446 GSRLVTCEADKTIKMW 461
           G  L+    D    +W
Sbjct: 282 GRLLLAGYDDFNCNVW 297

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 7/197 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R ++GH G++    F   N    T S D T  +WD+  G    T TGH   V  L+++  
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
                S   D   K WD+ +    +++ GH S +  +   P  +   TG  D+ CR++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 289 RTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
           R   ++   + HDN +C   SV    +   ++ G  D     WD         L  H   
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 346 VRAMALHPTEDCFASAS 362
           V  + +  T+D  A A+
Sbjct: 315 VSCLGV--TDDGMAVAT 329

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
           TL GH+ ++  +   +    + SA  D ++  WD      + +     S V      P+ 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
           + +  GG D++C +++++T+         LAGH   + C  F    D Q+VT S D+T  
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 167
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
            WD+  G+   T T H   V +++L P    F S + +   K    +        +  ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
            IN++     G   ATG D+ +   +D ++    Q+  T      +    GI ++S+  +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 281
Query: 446 GSRLVTCEADKTIKMW 461
           G  L+    D    +W
Sbjct: 282 GRLLLAGYDDFNCNVW 297

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 7/197 (3%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R ++GH G++    F   N    T S D T  +WD+  G    T TGH   V  L+++  
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
                S   D   K WD+ +    +++ GH S +  +   P  +   TG  D+ CR++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 289 RTKMQIFALAGHDNTVC---SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS 345
           R   ++   + HDN +C   SV    +   ++ G  D     WD         L  H   
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 346 VRAMALHPTEDCFASAS 362
           V  + +  T+D  A A+
Sbjct: 315 VSCLGV--TDDGMAVAT 329

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 14/256 (5%)
Query: 212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
           TL GH+ ++  +   +    + SA  D ++  WD      + +     S V      P+ 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 272 DILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTV-CSVFTRPTDPQVVTGSHDSTIK 326
           + +  GG D++C +++++T+         LAGH   + C  F    D Q+VT S D+T  
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCA 167
Query: 327 FWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
            WD+  G+   T T H   V +++L P    F S + +   K    +        +  ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
            IN++     G   ATG D+ +   +D ++    Q+  T      +    GI ++S+  +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNII---CGITSVSFSKS 281
Query: 446 GSRLVTCEADKTIKMW 461
           G  L+    D    +W
Sbjct: 282 GRLLLAGYDDFNCNVW 297

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRG 222
           + Y+   GH   V SV  D   +   +GS D+TIK+W + KG    TL GH   + QVR 
Sbjct: 98  ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRV 156
Query: 223 L---AVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
           +           + SAG+DK VK W+L Q ++   + GH S +  L   P   ++ + G+
Sbjct: 157 VPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
           D    +W++  K   + L+  D      F+
Sbjct: 217 DGEIXLWNLAAKKAXYTLSAQDEVFSLAFS 246

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           R   GH   V+         +  + S D+T+++WDVA G       GH   V  + +  K
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK 118
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID------ILLTGGRDSV 282
            + + S   DK +K W + + + + +  GH   V  + + P          +++ G D  
Sbjct: 119 ASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 283 CRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH 341
            + W++  + QI A   GH++ + ++   P    + +   D  I  W+L   K   TL+ 
Sbjct: 178 VKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 342 HKKSVRAMALHPTEDCFASASAENIKKFNL 371
             + V ++A  P     A+A+A  IK F+L
Sbjct: 237 QDE-VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS 227
           ++ ++GH  +V  +A    N +  + S D+T+++WD+  GT      GH  +V  +A S 
Sbjct: 69  HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 228 KHTYMFSAGDDKQVKCWDL--EQNKVIRSYHGHLSGVYCLGLHPTID----------ILL 275
            +  + SAG ++++K W++  E          H   V C+   P +              
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 276 TGGRDSVCRVWDIRTKMQI-FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334
           + G D   +VW+  T  QI +    H++ V  +   P    + TG  D  +  WD+    
Sbjct: 189 SVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI---- 242
Query: 335 TMLTLTHHKK------SVRAMALHPTEDCFASASAENIKKFNL 371
             L LT+ ++      ++  +A +P     A  + + +K FNL
Sbjct: 243 --LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNL 283

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 273 ILLTGGRDSVCRVWDIRTKMQ--IF-----ALAGHDNTVCSVFTRPTDPQVVTGSHDSTI 325
           +L++G RD    +W +  + Q   F     AL GH++ V  +     +   ++ S D T+
Sbjct: 41  VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNL 371
           + WDLR G T      H+  V ++A  P      SA AE  IK +N+
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 131/322 (40%), Gaps = 35/322 (10%)
Query: 167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS 226
           C R + GH G V S+ +     W  + S D  + +W+         +  H   V   A +
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 227 SKHTYMFSAGDDKQVKCWDLEQ----------NKVIRSYHGHLSGVYCLGLHPTIDILLT 276
                +   G D     ++L            ++V+  + G+ S   C  +      L+T
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS--CQYVPDQETRLIT 175
Query: 277 GGRDSVCRVWDIRT--KMQIFAL---AGHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDL 330
           G  D  C +WD+ T  ++ IF     +GH   V S+     +  + ++GS D+T++ WDL
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 331 RYGKTMLTLTH-HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLH------NMLS 382
           R     +   H H+  + ++   P    F + S +   + F++  G  L       +   
Sbjct: 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295
Query: 383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDS--EAGIYA 439
            +  I+ S+A +  G +L  G  NG  + WD         A+ ++  G+L +  E  I  
Sbjct: 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWD------TLLAEMVLNLGTLQNSHEGRISC 349
Query: 440 LSYDVTGSRLVTCEADKTIKMW 461
           L     GS L T   DK +K+W
Sbjct: 350 LGLSSDGSALCTGSWDKNLKIW 371

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 11/234 (4%)
Query: 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFS 234
           ++RS            G    T+ IWD+A  T  +K  LT        LA+S      FS
Sbjct: 99  YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI 294
              D  +  WDL    ++R + GH  G  C+ +      L TGG D+  R WD+R   Q 
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ- 217
Query: 295 FALAGHDNT--VCSVFTRPTDPQVVTGSHDSTIKFWDL-RYGKTMLTLTHHKKSVRAMAL 351
             L  HD T  + S+   PT   +  G   S ++   + +  K  L L  H+  V ++  
Sbjct: 218 --LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLSLKF 273
Query: 352 HPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGD 404
                 F S   +N +  +  P G  +         +   ++V+++ ++   GD
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 274 LLTGGRDSVCRVWDI-----RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
           + TGG+  V +VWDI     ++ +        DN + S    P    ++ G   ST+  W
Sbjct: 66  VYTGGKGCV-KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 329 DLRY--GKTMLTLTHHKKSVRAMALHP-TEDCFASASAENIKKFNLPKGEFLHNMLSQQK 385
           DL     +    LT    +  A+A+ P ++ CF+  S  NI  ++L     +        
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184
Query: 386 TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
                   N+   L TGG + ++  WD + G   QQ          D  + I++L Y  T
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------DFTSQIFSLGYCPT 235
Query: 446 GSRLVT 451
           G  L  
Sbjct: 236 GEWLAV 241

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 125/288 (43%), Gaps = 17/288 (5%)
Query: 183 FDHSNTWFCTGSADRTIKIWDVAKGTLK-LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV 241
            D SN      + +R + +W+   G++  L  T     V  +  S   +++     +  V
Sbjct: 99  LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLV 158
Query: 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIFALAGH 300
             +D+E    +R+  GH + V CL  +    +L +G R       D+R    QI  L GH
Sbjct: 159 DIYDVESQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216
Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360
            + VC +  R    Q+ +G +D+ ++ WD R      T T+H  +V+A+A  P +    +
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 361 ASAENIKK----FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG--DNGSLWFWDWK 414
                + K    +N   G  ++ + +  +      + + + +++T G  DN +L  W + 
Sbjct: 277 TGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN-NLSIWSYS 335
Query: 415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
           S    +Q    V   + D+     ALS D  G  L T  +D+ +K WR
Sbjct: 336 SSGLTKQ----VDIPAHDTRVLYSALSPD--GRILSTAASDENLKFWR 377

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 114/276 (41%), Gaps = 15/276 (5%)
Query: 191 CTGSADRTIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDL 246
            TGS D  +K+W      L L  +L GH  Q+  ++V   HT   +A    D  ++ WDL
Sbjct: 52  VTGSLDDLVKVWKWRDERLDLQWSLEGH--QLGVVSVDISHTLPIAASSSLDAHIRLWDL 109
Query: 247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS 306
           E  K I+S        + L   P    L TG       ++ + +  + ++L      + S
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169
Query: 307 VFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN- 365
           +   P    + +G+ D  I  +D+  GK + TL  H   +R++   P      +AS +  
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTI 425
           IK +++        +      ++N     ++    +   + S+  WD          +T 
Sbjct: 230 IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD-------VGTRTC 282
Query: 426 VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
           V     D +  ++ + Y+  GS++V+   D+ I ++
Sbjct: 283 VHT-FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 35/285 (12%)
Query: 165 WKCYRVIS-GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGHIEQVR 221
           W C  V+S GH   VR VA+     +  + S D T  IW   +   +   TL GH  +V+
Sbjct: 50  WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK 109
Query: 222 GLAVSSKHTYMFSAGDDKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGG 278
            +A +     + +   DK V  W++++    + +   + H   V  +  HP+ ++L +  
Sbjct: 110 SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 279 RDSVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY---- 332
            D   +++       +    L GH++TV S+   P+  ++ + S D T++ W        
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229
Query: 333 -----------GKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKF--------NL 371
                       K + TL+  H +++  +A        A+A  ++ I+ F          
Sbjct: 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289
Query: 372 PKGEFLHNMLSQQKTIINSMAVN--EEGVLATGGDNGSLWFWDWK 414
           P      ++       +N +A N  E G+LA+  D+G + FW ++
Sbjct: 290 PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 55/249 (22%)
Query: 223 LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS---YHGHLSGVYCLGLHPTIDILLTGGR 279
           LA +   T + S G D++++ W  E +  I       GH   V  +   P  + L +   
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 280 DSVCRVWDIRTK--MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG---K 334
           D+   +W         +  L GH+N V SV   P+   + T S D ++  W++      +
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 335 TMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVN 394
            +  L  H + V+ +  HP+++  ASAS ++  K    + +                   
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED------------------- 182
Query: 395 EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA 454
                            DW      +  ++ V           ++L++D +G RL +C  
Sbjct: 183 -----------------DWVCCATLEGHESTV-----------WSLAFDPSGQRLASCSD 214
Query: 455 DKTIKMWRE 463
           D+T+++WR+
Sbjct: 215 DRTVRIWRQ 223

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 187 NTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD 238
           N +  + S D TI +WD+            K   TGH   V  +A    H  +F S  DD
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 239 KQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQ 293
           +++  WD   N   +  H    H + V CL  +P  + IL TG  D    +WD+R  K++
Sbjct: 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Query: 294 IFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDL 330
           + +   H + +  V   P +  ++  S  D  +  WDL
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 187 NTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD 238
           N +  + S D TI +WD+            K   TGH   V  +A    H  +F S  DD
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 239 KQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQ 293
           +++  WD   N   +  H    H + V CL  +P  + IL TG  D    +WD+R  K++
Sbjct: 256 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Query: 294 IFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDL 330
           + +   H + +  V   P +  ++  S  D  +  WDL
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 115/265 (43%), Gaps = 32/265 (12%)
Query: 178 VRSVAFDHSNTWFCTGSADRTIKIW---DVAKGTLKLTL----TGHIEQVRGLAVSSKHT 230
           +RSVA+    +    GS D T+ IW   + A  T ++ L     GH  +V+G+A S+   
Sbjct: 61  IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 231 YMFSAGDDKQVKCWDL----EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286
           Y+ +   DK V  W+     E+ + I     H   V  +  HP+  +L +   D   R+W
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 287 -DIRTKMQIFA-LAGHDNTVCSVFTRPTDP--QVVTGSHDSTIKFWDL---------RYG 333
            D     +  A L GH+ TV S     T+   ++ +GS DST++ W            + 
Sbjct: 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240
Query: 334 KTMLTLTHHKKSVRAMALHPTEDCFASASAENI-KKFNLPKGE---FLHNMLSQ---QKT 386
              +    HK+ V  +A        AS  A+ +   +    GE   F    L     +  
Sbjct: 241 CEAILPDVHKRQVYNVAW-GFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN 299
Query: 387 IINSMAVNEEGVLATGGDNGSLWFW 411
           ++  + +N + +LATGGD+G + FW
Sbjct: 300 VVKWLELNGKTILATGGDDGIVNFW 324

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 187 NTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDD 238
           N +  + S D TI +WD+            K   TGH   V  +A    H  +F S  DD
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 239 KQVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQ 293
           +++  WD   N   +  H    H + V CL  +P  + IL TG  D    +WD+R  K++
Sbjct: 258 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 294 IFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDL 330
           + +   H + +  V   P +  ++  S  D  +  WDL
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 42/289 (14%)
Query: 196 DRTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253
           D ++ +W  + G +   L +    E +  +A   +  Y+       +V+ WD++Q K +R
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
           +   H + V  L  +  I  L +G R       D+R  +  +  L+GH   VC +   P 
Sbjct: 195 NMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 313 DPQVVTGSHDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTE-DCFASA---SAE 364
              + +G +D+ +  W    G+     + T T H+ +V+A+A  P + +  A+    S  
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 312
Query: 365 NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK---SGHNFQQ 421
           +I+ +N+  G  L              AV+    + +      LW   +K   SGH F Q
Sbjct: 313 HIRIWNVCSGACL-------------SAVDAHSQVCS-----ILWSPHYKELISGHGFAQ 354
Query: 422 AQ-------TIVQPGSLDSEAG-IYALSYDVTGSRLVTCEADKTIKMWR 462
            Q       T+ +   L      + +L+    G+ + +  AD+T+++WR
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 42/289 (14%)
Query: 196 DRTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253
           D ++ +W  + G +   L +    E +  +A   +  Y+       +V+ WD++Q K +R
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
           +   H + V  L  +  I  L +G R       D+R  +  +  L+GH   VC +   P 
Sbjct: 184 NMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 313 DPQVVTGSHDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTE-DCFASA---SAE 364
              + +G +D+ +  W    G+     + T T H+ +V+A+A  P + +  A+    S  
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301
Query: 365 NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK---SGHNFQQ 421
           +I+ +N+  G  L              AV+    + +      LW   +K   SGH F Q
Sbjct: 302 HIRIWNVCSGACL-------------SAVDAHSQVCS-----ILWSPHYKELISGHGFAQ 343
Query: 422 AQ-------TIVQPGSLDSEAG-IYALSYDVTGSRLVTCEADKTIKMWR 462
            Q       T+ +   L      + +L+    G+ + +  AD+T+++WR
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 122/288 (42%), Gaps = 40/288 (13%)
Query: 196 DRTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR 253
           D ++ +W  + G +   L +    E +  +A   +  Y+       +V+ WD++Q K +R
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 254 SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPT 312
           +   H + V  L  +  I  L +G R       D+R  +  +  L+GH   VC +   P 
Sbjct: 104 NMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 313 DPQVVTGSHDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTE-DCFASA---SAE 364
              + +G +D+ +  W    G+     + T T H+ +V+A+A  P + +  A+    S  
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221
Query: 365 NIKKFNLPKGEFLH--NMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQA 422
           +I+ +N+  G  L   +  SQ  +I+ S    E                   SGH F Q 
Sbjct: 222 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL-----------------ISGHGFAQN 264
Query: 423 Q-------TIVQPGSLDSEAG-IYALSYDVTGSRLVTCEADKTIKMWR 462
           Q       T+ +   L      + +L+    G+ + +  AD+T+++WR
Sbjct: 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 190 FCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248
           F T SAD+TIK+W   K  +  T +G H + VR LAV     ++ S  +D  +K  D   
Sbjct: 158 FLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHT 214
Query: 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW 286
             V+R+Y GH S VYC+ L P  DI ++ G D   R+W
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPNGDI-VSCGEDRTVRIW 251

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 18/207 (8%)
Query: 272 DILLTGGRDSVCR---VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
           ++LL GG+D+      ++    +  ++ L GH   VCS+  +  D  V++GS D T K W
Sbjct: 72  ELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVW 129
Query: 329 DLRYGKTMLTLTHHKKSV-RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTI 387
             + G  +  L  H  SV  A  +  +E+ F +ASA+   K      + +         +
Sbjct: 130 --KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL-WQNDKVIKTFSGIHNDV 186
Query: 388 INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS 447
           +  +AV ++G   +  ++G +   D  +G   +  +          E+ +Y +     G 
Sbjct: 187 VRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEG--------HESFVYCIKLLPNGD 238
Query: 448 RLVTCEADKTIKMWREDETATPETHPL 474
            +V+C  D+T+++W ++  +  +   L
Sbjct: 239 -IVSCGEDRTVRIWSKENGSLKQVITL 264

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 199 IKIWDV-AKGTL---KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254
           +++W++  K +L   K     H + V+ L+V S  T   S G D  VK WDL Q  V++S
Sbjct: 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS 176
Query: 255 YHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIR 289
           Y+ H S V C+   P  D I L+ G D    +WD R
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-IL 274
           H + V  ++V S  T   S   D  +K WDL Q  V+ SY  H + V C+   P  D + 
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 275 LTGGRDSVCRVWDIRT---KMQIFALA-GHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWD 329
           L+   D+   +WD R      QI   A G+  T  S+   P   +V V G  + T+   D
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT--SLAWHPQQSEVFVFGDENGTVSLVD 243
Query: 330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIK 367
            +    +L+   H + V  +   P    F ++ +E+  
Sbjct: 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS 281

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315
             H+S +  L   P+ + L++  +D   ++W ++       L GH  TV  +        
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKK---SVRAMALHPTEDCFASASAENIKKFNLP 372
           V++ S D TI+ W+   G T+ T    +     V ++AL    D      + + KK NL 
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS-KKNNLE 254
Query: 373 KGEF--------------LHNMLSQQKTI---------INSMAV--NEEGVLATGGDNGS 407
            G +              +HN+ S+++TI          NS+ V  N    +  G +NG 
Sbjct: 255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 408 LWFWDWKS 415
           L  WD +S
Sbjct: 315 LAQWDLRS 322

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ 315
             H+S +  L   P+ + L++  +D   ++W ++       L GH  TV  +        
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKK---SVRAMALHPTEDCFASASAENIKKFNLP 372
           V++ S D TI+ W+   G T+ T    +     V ++AL    D      + + KK NL 
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS-KKNNLE 251
Query: 373 KGEF--------------LHNMLSQQKTI---------INSMAV--NEEGVLATGGDNGS 407
            G +              +HN+ S+++TI          NS+ V  N    +  G +NG 
Sbjct: 252 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 408 LWFWDWKS 415
           L  WD +S
Sbjct: 312 LAQWDLRS 319

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 18/157 (11%)
Query: 191 CTGSADRTIKIWDVAK-GTLKLTLTGHIEQVRGLAVSSKHTY----------MFSAGDDK 239
           CTG      +I  V + G + L    H E VR +  +   T           + +     
Sbjct: 153 CTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIG 212
Query: 240 QVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRT-KMQ 293
           Q+K WD  Q       I S  G    ++C+  HP    ++ TGG+D +  +WD+R   M 
Sbjct: 213 QLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMP 272
Query: 294 IFALAGHDNTVCSVFTRPTDPQ-VVTGSHDSTIKFWD 329
           +  L  H+  +  V   P++P+ + T S D ++  WD
Sbjct: 273 VSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 30/188 (15%)
Query: 167 CYRVISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDV--AKGTLKLTL---------- 213
           C  ++ GH   + +V++    +    T SAD  +K+WDV  A G L +TL          
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL-ITLDQHNGKKSQA 236
Query: 214 -----TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
                T H  +V GL  +S   ++ + G D +++ W+    +     +G +      GL 
Sbjct: 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK 296
Query: 269 PTID-------ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-CSVFTRPTDPQVVTGS 320
            T+        + +  G  S   V+ + +  QI  L GH  TV C VF +    ++ +GS
Sbjct: 297 FTVSCGCSSEFVFVPYG--STIAVYTVYSGEQITMLKGHYKTVDCCVF-QSNFQELYSGS 353
Query: 321 HDSTIKFW 328
            D  I  W
Sbjct: 354 RDCNILAW 361

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
           L L GH ++  GL+ +S  + ++ SA DD  V  WD+    ++ K++ +   + GH + V
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
             +  H   + L  +   D    +WD R   T      +  H   V C  F   ++  + 
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
           TGS D T+  WDLR  K  L T   HK  +  +   P  +   ++S 
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
           L L GH ++  GL+ +S  + ++ SA DD  V  WD+    ++ K++ +   + GH + V
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
             +  H   + L  +   D    +WD R   T      +  H   V C  F   ++  + 
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
           TGS D T+  WDLR  K  L T   HK  +  +   P  +   ++S 
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 35/286 (12%)
Query: 189 WFCTGSADRTIKIWDVAKG--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL 246
           +   GS    ++ W+V     T+      H   V  +  S   + +F+A  DK  K WDL
Sbjct: 56  FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 247 EQNKVIR--SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV 304
             N+ I+   +   +  ++ +   P    ++TG  D   + WD R+   +  L   +   
Sbjct: 116 SSNQAIQIAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174
Query: 305 CSVFTRPTDPQVVTGSHDSTIKFWDL-----RYGKTMLTLTHHKKSVRAMALHPTEDC-F 358
           C+       P  V  + +  +  + L      + +    L H  + V        +   F
Sbjct: 175 CADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231
Query: 359 ASASAEN---IKKFNLP---KGEF---------LHNMLSQQKTIINSMAVNE-EGVLATG 402
           A  S E    I   N P   K  F          +    Q    +N +A +   G LAT 
Sbjct: 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV 291
Query: 403 GDNGSLWFWDWKSGHNFQQAQTIVQPGSL-----DSEAGIYALSYD 443
           G +G   FWD  +    + ++ + QP S      +     YA SYD
Sbjct: 292 GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 211 LTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDL----EQNKVIRS---YHGHLSGV 262
           L L GH ++  GL+ +   + ++ SA DD  +  WD+    ++ KV+ +   + GH + V
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVV 230
Query: 263 YCLGLHPTIDILL-TGGRDSVCRVWDIR---TKMQIFALAGHDNTV-CSVFTRPTDPQVV 317
             +  H   + L  +   D    +WD R   T     ++  H   V C  F   ++  + 
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 318 TGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASA 363
           TGS D T+  WDLR  K  L +   HK  +  +   P  +   ++S 
Sbjct: 291 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 39/171 (22%)
Query: 170 VISGHLGWVRSVAFD-HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK 228
           ++ GH   V  +A+  H++    +GS D T+ +W++  G L L L               
Sbjct: 76  LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--------------- 120
Query: 229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWD 287
                                + + +  GH   V  +  HPT  ++LL+ G D+V  VWD
Sbjct: 121 --------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Query: 288 IRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336
           + T   +  L    H +T+ SV        + T   D  ++  + R G  +
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLS----GVYCLGLHPTIDILLTGGRDSVCRVW 286
           ++ + G D+++ C+D +  + ++           G++ L    +     T G D+  RVW
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVW 279
Query: 287 DIRTK--MQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
           D+ T   +Q + L         V    T + ++++ S D T+ F++L + + + T++ H 
Sbjct: 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 344 KSVRAMALHP 353
           K + A+ ++P
Sbjct: 340 KGITALTVNP 349

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLS----GVYCLGLHPTIDILLTGGRDSVCRVW 286
           ++ + G D+++ C+D +  + ++           G++ L    +     T G D+  RVW
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVW 279
Query: 287 DIRTK--MQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
           D+ T   +Q + L         V    T + ++++ S D T+ F++L + + + T++ H 
Sbjct: 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 344 KSVRAMALHP 353
           K + A+ ++P
Sbjct: 340 KGITALTVNP 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	485
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.48
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.46
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.45
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.39
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.39
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.37
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.36
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.34
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.2
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.17
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.15
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.14
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.12
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.11
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.08
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.02
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.02
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.01
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.01
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.01
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.97
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.96
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.94
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.93
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.92
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.9
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.89
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.84
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.77
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.71
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.69
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.57
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.55
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.51
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.48
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.42
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.38
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.36
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.31
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.24
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.22
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.21
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.21
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.2
3ott_A	758	Two-component system sensor histidine kinase; beta	98.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.16
3ott_A	758	Two-component system sensor histidine kinase; beta	98.14
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.09
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.07
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.03
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.03
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.99
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.9
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.9
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.83
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.82
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.79
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.73
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.71
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.66
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.66
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.57
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.53
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.48
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.48
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.45
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.45
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.41
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.39
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.37
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.3
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.2
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.19
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.17
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.15
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.14
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.07
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.05
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.04
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.02
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.98
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.93
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.9
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.31
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.29
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.96
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.9
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.23
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.23
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.82
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	94.26
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.87
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	93.18
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	93.0
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.92
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	90.74
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	89.47
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.27
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	88.79
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	88.41
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	88.32
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	85.96
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	85.08
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.74
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	84.34
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	83.69
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	83.68
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	83.45
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	83.4
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	82.12

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-48  Score=389.70  Aligned_cols=287  Identities=24%  Similarity=0.449  Sum_probs=271.5

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      ...+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                      +++++..+.+|...|.+++|+|++++|++|+.|++|++||++++.++..+.+|...|.++.+++++.+|++|+.||+|++
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v  260 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  260 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECCC--------------------CCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHPT--------------------EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT  386 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p~--------------------~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~  386 (485)
                      ||+++++....+..|...|.+++|+|+                    +.+|++++.++ |++||+.++..+..+ .+|..
T Consensus       261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~  339 (410)
T 1vyh_C          261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDN  339 (410)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-ECCSS
T ss_pred             EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-ECCCC
Confidence            999999999999999999999999996                    67899999888 999999999988775 56788


Q ss_pred             cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       387 ~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .|.++.|++++ +|++|+.||.|++||+.+++.+..+.        .|...|++++|+|++.+|++|+.||+|+||++
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--------CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            99999999999 99999999999999999887766554        47788999999999999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-46  Score=366.90  Aligned_cols=290  Identities=23%  Similarity=0.380  Sum_probs=268.1

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      +.+..+++.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCC----eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457          244 WDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       244 wd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      ||+.++    +....+.+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            999875    45677889999999999998864 8999999999999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc-CCcccEEEEEeCCCC
Q 011457          320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS-QQKTIINSMAVNEEG  397 (485)
Q Consensus       320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~  397 (485)
                      +.||.|++||+++++.+..+..|...|.+++|+|++.+|++++.++ |++||+.+++.+..+.. .+...+.+++|+|++
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g  282 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred             eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence            9999999999999999999999999999999999999999999887 99999999887766532 223579999999999


Q ss_pred             -eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          398 -VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       398 -~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                       +|++|+.||.|++||+.+++....+.        +|...|++++|+|+|.+|++|+.||+|+||+
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKADRAGVLA--------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEECCCCeEEEEEcccCcEeeEee--------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence             99999999999999999887665543        5788999999999999999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.1e-47  Score=366.02  Aligned_cols=290  Identities=21%  Similarity=0.378  Sum_probs=267.7

Q ss_pred             ceEEEEecCCcceEEEEEccC----CCEEEEEeCCCeEEEEECCCCce--EEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457          166 KCYRVISGHLGWVRSVAFDHS----NTWFCTGSADRTIKIWDVAKGTL--KLTLTGHIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~l~~sp~----~~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      .+++.+++|.+.|++++|+|+    +.+|+||+.|++|+||++.+++.  ...+.+|...|.+++|++++.++++++.|+
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            445677899999999999874    67999999999999999987754  456899999999999999999999999999


Q ss_pred             cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457          240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      +|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|++++|++|
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457          320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-  397 (485)
Q Consensus       320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-  397 (485)
                      +.||.|++||+++++.+..+..|..+|.+++|+|++.+|++++.++ |++||+.+++....+ ..|...|.+++|+|++ 
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDT  261 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSS
T ss_pred             cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-cCCCCceEEEEECCCCC
Confidence            9999999999999999999999999999999999999999999887 999999999887765 6788899999999999 


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      +|++|+.||.|++||+.+++.+..+.        .|...|++++|+++|++|++++.||+|+|||..
T Consensus       262 ~l~s~s~D~~v~iwd~~~~~~~~~~~--------~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          262 HFVSSSSDKSVKVWDVGTRTCVHTFF--------DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEEeCCCcEEEEeCCCCEEEEEEc--------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999987766553        478889999999999999999999999999963

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-45  Score=360.75  Aligned_cols=290  Identities=20%  Similarity=0.308  Sum_probs=265.4

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      .+..+.|.+|.+.|++++|+|++.+|++|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.+++|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCC------eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC--CCCEE
Q 011457          245 DLEQN------KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP--TDPQV  316 (485)
Q Consensus       245 d~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l  316 (485)
                      ++...      .....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.++.++|  ++++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            98643      34566778999999999999999999999999999999999999999999999999999987  46899


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC-CcccEEEEEeC
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ-QKTIINSMAVN  394 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~  394 (485)
                      ++|+.||.|++||+++++++..+..|...|.+++|+|++.+|++++.|+ |++||++.+..+..+... ....+.++.|+
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            9999999999999999999999999999999999999999999999887 999999988776654322 23468899999


Q ss_pred             CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      +++ +|++|+.||.|++||+.+++.+..+.        +|...|++++|+|+|++|++|+.||+|+||+
T Consensus       294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWDVLKGSRVSILF--------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEECCCcEEEEECCCCceEEEEE--------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999 99999999999999999887665442        5788999999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-45  Score=356.72  Aligned_cols=297  Identities=21%  Similarity=0.386  Sum_probs=261.0

Q ss_pred             cceEEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCC-----CceEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAK-----GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~-----~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  238 (485)
                      +.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++..     +..+..+.+|...|.+++|+|++++|++|+.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            56778899999999999999965 8999999999999999864     33567889999999999999999999999999


Q ss_pred             CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCC-----
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD-----  313 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-----  313 (485)
                      ++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++ +..+..+.+|...|.++.+.|..     
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence            999999999999999999999999999999999999999999999999997 56778888999999999999854     


Q ss_pred             -CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457          314 -PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       314 -~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                       ..+++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++++.|+ |++||+.+++.+..+.  ....+.++
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~  243 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFSL  243 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEEE
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEE
Confidence             4899999999999999999999999999999999999999999999999988 9999999999887764  34579999


Q ss_pred             EeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          392 AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       392 ~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      +|+|++ +|++++ ++.+++|++..+.....+..........+...+.+++|+|+|++|++|+.||.|+||++.+
T Consensus       244 ~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          244 AFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            999999 555555 5569999998766554443222222223566799999999999999999999999999865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-45  Score=388.06  Aligned_cols=337  Identities=15%  Similarity=0.214  Sum_probs=282.7

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCc---------------------------------------
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPW---------------------------------------  165 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~---------------------------------------  165 (485)
                      ..+|...|.+++++|++.++++++.|+.+++|+........                                       
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w  134 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF  134 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence            45799999999999999999999999999999753211100                                       


Q ss_pred             ---ceEEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457          166 ---KCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV  241 (485)
Q Consensus       166 ---~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V  241 (485)
                         +....+.+|.+.|++++|+|++. .|++|+.|++|++||..+++...++.+|...|.+++|+|++++|++++.|++|
T Consensus       135 d~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i  214 (611)
T 1nr0_A          135 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI  214 (611)
T ss_dssp             TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence               11123567888888888888876 59999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCeeEEEec-------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE-------------------
Q 011457          242 KCWDLEQNKVIRSYH-------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF-------------------  295 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-------------------  295 (485)
                      ++||+.+++.+..+.       +|...|.+++|+|++++|++++.|++|++||+++++.+.                   
T Consensus       215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (611)
T 1nr0_A          215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK  294 (611)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred             EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence            999999999988884       799999999999999999999999999999998776543                   


Q ss_pred             ------------------------EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe-c----------
Q 011457          296 ------------------------ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL-T----------  340 (485)
Q Consensus       296 ------------------------~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~----------  340 (485)
                                              .+.+|...|.+++|+|++++|++++.|++|++||+.+++....+ .          
T Consensus       295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~  374 (611)
T 1nr0_A          295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK  374 (611)
T ss_dssp             SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence                                    33578999999999999999999999999999999876543221 0          


Q ss_pred             -----------------------------------------------------------------------cCCCceEEE
Q 011457          341 -----------------------------------------------------------------------HHKKSVRAM  349 (485)
Q Consensus       341 -----------------------------------------------------------------------~~~~~v~~l  349 (485)
                                                                                             .+...+.++
T Consensus       375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v  454 (611)
T 1nr0_A          375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV  454 (611)
T ss_dssp             ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred             ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence                                                                                   012346789


Q ss_pred             EECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC-Ccccccceeee
Q 011457          350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS-GHNFQQAQTIV  426 (485)
Q Consensus       350 ~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~  426 (485)
                      +|+|++.+|++++.++ |++|++..+.........|...|.+++|+|++ +|++++.|+.|++||+.+ ++......   
T Consensus       455 a~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~---  531 (611)
T 1nr0_A          455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---  531 (611)
T ss_dssp             EECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---
T ss_pred             EEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---
Confidence            9999999999999998 99999987654322225678899999999999 999999999999999987 43322100   


Q ss_pred             ccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       427 ~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                         ...|...|++++|+|+|++|++|+.|++|+||+++.+.
T Consensus       532 ---~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          532 ---WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             ---CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             ---eeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence               11378899999999999999999999999999998754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.4e-46  Score=389.02  Aligned_cols=327  Identities=19%  Similarity=0.293  Sum_probs=281.0

Q ss_pred             CCCCCcceeecccCCCCc-ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          125 ASGKSSAIVSTSASSERN-LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      ..+|...|.++.|+|++. .+++++.|..+++|...    +.++...+.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~----~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd  218 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  218 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC----CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence            457889999999999987 59999999999999753    4688899999999999999999999999999999999999


Q ss_pred             CCCCceEEEEc-------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE----------------------
Q 011457          204 VAKGTLKLTLT-------GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS----------------------  254 (485)
Q Consensus       204 ~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~----------------------  254 (485)
                      +.+++....+.       +|.+.|.+++|+|++++|++++.|++|++||+.+++++..                      
T Consensus       219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (611)
T 1nr0_A          219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV  298 (611)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence            99999888884       7999999999999999999999999999999988765543                      


Q ss_pred             ---------------------ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-c--------------
Q 011457          255 ---------------------YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-A--------------  298 (485)
Q Consensus       255 ---------------------~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~--------------  298 (485)
                                           +.+|...|.+++|+|++++|++++.|++|++||+.+++....+ .              
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~  378 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK  378 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence                                 3578899999999999999999999999999999876443221 0              


Q ss_pred             -------------------------------------------------------------------cCCccEEEEEEcC
Q 011457          299 -------------------------------------------------------------------GHDNTVCSVFTRP  311 (485)
Q Consensus       299 -------------------------------------------------------------------~~~~~v~~l~~~~  311 (485)
                                                                                         .|...+.+++|+|
T Consensus       379 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp  458 (611)
T 1nr0_A          379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN  458 (611)
T ss_dssp             SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred             CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC
Confidence                                                                               1234567899999


Q ss_pred             CCCEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCC-Cceeee-eccCCcc
Q 011457          312 TDPQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK-GEFLHN-MLSQQKT  386 (485)
Q Consensus       312 ~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~-~~~~~~-~~~~~~~  386 (485)
                      ++++|++|+.|++|++||+..+..  ... ..|...|.+++|+|++.+|++++.++ +++|++.+ ++.... ....|..
T Consensus       459 dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~  537 (611)
T 1nr0_A          459 DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA  537 (611)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred             CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc
Confidence            999999999999999999987653  233 67889999999999999999999887 99999987 554443 2344889


Q ss_pred             cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccc-cceeeeccCCCCC-CccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQ-QAQTIVQPGSLDS-EAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       387 ~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~-~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .|.+++|+|++ +|++|+.|++|++||+.++.... ..       ...| ...|++++|+|+++ |++++.||+|++|++
T Consensus       538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~-------~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-------KGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-------TTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             ceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh-------hccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            99999999999 99999999999999998765321 11       1246 68899999999998 999999999999997


Q ss_pred             C
Q 011457          464 D  464 (485)
Q Consensus       464 ~  464 (485)
                      .
T Consensus       610 ~  610 (611)
T 1nr0_A          610 P  610 (611)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-45  Score=358.73  Aligned_cols=308  Identities=19%  Similarity=0.302  Sum_probs=258.8

Q ss_pred             CcceEEEEecCCc-ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE---EEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457          164 PWKCYRVISGHLG-WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL---TLTGHIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       164 ~~~~~~~l~~H~~-~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~---~~~~h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      ..+++..+.+|.+ .|.+++|+|++++||+|+.|++|+|||+.++....   ...+|...|.+++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            4678889999998 99999999999999999999999999998876432   2368999999999999999999999999


Q ss_pred             cEEEEECCCC--eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc---eEEEeccCCccEEEEEEcCCCC
Q 011457          240 QVKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM---QIFALAGHDNTVCSVFTRPTDP  314 (485)
Q Consensus       240 ~V~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~  314 (485)
                      +|++||+.++  +++..+.+|...|.+++|+|++++|++|+.|+.|++||++++.   .+..+.+|...|.+++|+|++.
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            9999999876  4678889999999999999999999999999999999998764   4567788999999999999999


Q ss_pred             EEEEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC---------------ce
Q 011457          315 QVVTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG---------------EF  376 (485)
Q Consensus       315 ~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~---------------~~  376 (485)
                      +|++++.|+.|++||.+.++  +...+.+|...|.+++|+|++.+|++++.|+ |++|+....               ..
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            99999999999999998875  4567889999999999999999999999887 999996322               22


Q ss_pred             eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccccee-eeccCCCCCCccEEEEEEccCC-CEEEEEE
Q 011457          377 LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQT-IVQPGSLDSEAGIYALSYDVTG-SRLVTCE  453 (485)
Q Consensus       377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~g-~~L~s~~  453 (485)
                      +..+...|...|.+++|++++ .|++++.|+.|++|+...+........ ........|...|++++|+|++ .+|++|+
T Consensus       244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s  323 (345)
T 3fm0_A          244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS  323 (345)
T ss_dssp             EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred             eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence            333344477889999999998 999999999999999876543221110 0111123578899999999998 4999999


Q ss_pred             CCCcEEEecCCCCCCCCC
Q 011457          454 ADKTIKMWREDETATPET  471 (485)
Q Consensus       454 ~Dg~I~iW~~~~~~~~~~  471 (485)
                      .||+|++|++.....+..
T Consensus       324 ~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          324 DDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             TTSCEEEEEECC------
T ss_pred             CCCcEEEEEecCCCCccc
Confidence            999999999988765443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.2e-45  Score=350.41  Aligned_cols=292  Identities=15%  Similarity=0.306  Sum_probs=260.5

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      .+..+++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcC-CCCEEEEEeCC
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRP-TDPQVVTGSHD  322 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~d  322 (485)
                      |+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999987 44567889999999999999 57899999999


Q ss_pred             CCEEEEECCCCeEEeEec-cCCCceEEEEECC--CCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457          323 STIKFWDLRYGKTMLTLT-HHKKSVRAMALHP--TEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-  397 (485)
Q Consensus       323 g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p--~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-  397 (485)
                      ++|++||++.+.....+. .+...+..+.|+|  ++.+|++++.++ |++||+.+++.+..+ .+|...|.++.|+|++ 
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSS
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCCCCCEEEEEECCCCC
Confidence            999999998877665554 4567899999986  678999999988 999999999888775 5778899999999999 


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC--EEEEEECCCcEEEecCCCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS--RLVTCEADKTIKMWREDET  466 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~L~s~~~Dg~I~iW~~~~~  466 (485)
                      +|++|+.||.|++||+.+++....+.        .+...+.+++|+|++.  +|++|+.|| +.+|++.+.
T Consensus       242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          242 IIISGSEDGTLKIWNSSTYKVEKTLN--------VGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC--------CSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             EEEEEcCCCeEEEEECCCCceeeecc--------CCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence            99999999999999999988776654        3567899999999875  467666554 778887653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.9e-44  Score=346.71  Aligned_cols=294  Identities=26%  Similarity=0.504  Sum_probs=265.8

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK  242 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~  242 (485)
                      +.+.+...+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus        11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            45788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD  322 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d  322 (485)
                      +||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.++.|+|++.+|++++.|
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc--cEEEEEeCCCC-
Q 011457          323 STIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT--IINSMAVNEEG-  397 (485)
Q Consensus       323 g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~-  397 (485)
                      |.|++||+++++.+..+. .+...+..++|+|++.+|++++.++ |++||+.+++.+..+..+...  .+......+++ 
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence            999999999998887764 4556899999999999999999888 999999999888776443322  22233333455 


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE--CCCcEEEecCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE--ADKTIKMWRED  464 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~--~Dg~I~iW~~~  464 (485)
                      +|++|+.||.|++||+.+++.+..+.        +|...|.+++|+|++++|++++  .|++|++|+.+
T Consensus       251 ~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          251 WIVSGSEDNLVYIWNLQTKEIVQKLQ--------GHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECCTTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEECCCCEEEEEECCCchhhhhhh--------ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            89999999999999999988766554        4778899999999999999997  69999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-46  Score=369.79  Aligned_cols=300  Identities=24%  Similarity=0.419  Sum_probs=267.4

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      ...+.++|.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCe-------eEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEe-----ccCCccEEEEEEc
Q 011457          244 WDLEQNK-------VIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFAL-----AGHDNTVCSVFTR  310 (485)
Q Consensus       244 wd~~~~~-------~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~  310 (485)
                      ||+.+..       ....+.+|...|.++.|+|+ +..|++|+.|++|++||+++++.+..+     .+|...|.++.++
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9997532       34567899999999999997 457999999999999999999988877     5789999999998


Q ss_pred             C-CCCEEEEEeCCCCEEEEECC-CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC---
Q 011457          311 P-TDPQVVTGSHDSTIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ---  384 (485)
Q Consensus       311 ~-~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~---  384 (485)
                      + ++.+|++|+.||+|++||++ .++.+..+.+|...|.+++|+|++.+|++++.|+ |++||+.+++.+..+....   
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            7 78899999999999999998 4577888999999999999999999999999988 9999999998877653322   


Q ss_pred             ---cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457          385 ---KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM  460 (485)
Q Consensus       385 ---~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i  460 (485)
                         ...+.+++|++++ +|++|+.||.|++||+.+++....+...    ...|...|++++|+|+|++|++|+.||+|+|
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i  370 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL----QNSHEGRISCLGLSSDGSALCTGSWDKNLKI  370 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS----CSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc----cCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence               2348899999999 9999999999999999888766544321    1357889999999999999999999999999


Q ss_pred             ecCCCCC
Q 011457          461 WREDETA  467 (485)
Q Consensus       461 W~~~~~~  467 (485)
                      |++....
T Consensus       371 W~~~~~~  377 (380)
T 3iz6_a          371 WAFSGHR  377 (380)
T ss_dssp             EECCSSS
T ss_pred             EecCCCc
Confidence            9987653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-44  Score=350.89  Aligned_cols=296  Identities=20%  Similarity=0.251  Sum_probs=244.3

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEE-cc-cccCEEEEEEcCCCCEEEEEeCCC
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTL-TG-HIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~--~~~~~~-~~-h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      ..++++.+.+|.+.|++++|+|+  +|++|+.|++|++||+..+  +....+ .+ |...|.+++|+|++++|++|+.|+
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            45678899999999999999987  9999999999999999875  445556 44 999999999999999999999999


Q ss_pred             cEEEEECCC-------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC----CceEEEeccCCccEEEEE
Q 011457          240 QVKCWDLEQ-------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT----KMQIFALAGHDNTVCSVF  308 (485)
Q Consensus       240 ~V~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~  308 (485)
                      +|++||++.       .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++.    .+.+..+.+|...|.++.
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999999853       456778899999999999999999999999999999999953    245678889999999999


Q ss_pred             EcCCCCEEEEEeCCCCEEEEECCCC--eEEeEeccCCCceEEEEECCC--CCEEEEEcCCC-EEEEECCCC--------c
Q 011457          309 TRPTDPQVVTGSHDSTIKFWDLRYG--KTMLTLTHHKKSVRAMALHPT--EDCFASASAEN-IKKFNLPKG--------E  375 (485)
Q Consensus       309 ~~~~~~~l~s~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~~~~-i~i~d~~~~--------~  375 (485)
                      |+|++.+|++++.|++|++||...+  +++..+.+|...|.+++|+|+  +.+|++++.|+ |++|++..+        .
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999999999999999876  678889999999999999998  67899998887 999998764        2


Q ss_pred             eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCc-cEEEEEEcc--CCCEEEEE
Q 011457          376 FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEA-GIYALSYDV--TGSRLVTC  452 (485)
Q Consensus       376 ~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s~--~g~~L~s~  452 (485)
                      ....+...|...|.+++|+++++|++++.||.|++||..+++.......     ...|.. .|++++|+|  ++++|++|
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~h~~~~v~~v~~~~~~~~~~las~  315 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR-----ALCHGVYEINVVKWLELNGKTILATG  315 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE-----SCTTTTSCEEEEEEC-----CCEEEE
T ss_pred             EeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc-----ccccccceEEEEEEecCCCceEEEEe
Confidence            3333333478899999999888999999999999999876632111000     123555 799999999  78999999


Q ss_pred             ECCCcEEEecCCCC
Q 011457          453 EADKTIKMWREDET  466 (485)
Q Consensus       453 ~~Dg~I~iW~~~~~  466 (485)
                      +.||+|+||+++..
T Consensus       316 s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          316 GDDGIVNFWSLEKA  329 (330)
T ss_dssp             ETTSEEEEEEC---
T ss_pred             cCCCcEEEEEeccC
Confidence            99999999998653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.3e-44  Score=348.70  Aligned_cols=298  Identities=20%  Similarity=0.371  Sum_probs=253.4

Q ss_pred             cceEEEEecCCcceEEEEE-----cc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEcccccCEEEEEEcCCCCE
Q 011457          165 WKCYRVISGHLGWVRSVAF-----DH-SNTWFCTGSADRTIKIWDVAKG-------TLKLTLTGHIEQVRGLAVSSKHTY  231 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~-----sp-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~~~~  231 (485)
                      .++..+|.+|.+.|++++|     ++ ++++|++|+.|++|+|||+.+.       .....+.+|...|.+++|+|++.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            5677889999999999999     76 8999999999999999998753       456778999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec---cCCccEEEEE
Q 011457          232 MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA---GHDNTVCSVF  308 (485)
Q Consensus       232 l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~  308 (485)
                      |++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. .......   +|...|.++.
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeee
Confidence            99999999999999999999999999999999999999999999999999999999984 3343333   6889999999


Q ss_pred             EcCCC----------CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc-e
Q 011457          309 TRPTD----------PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE-F  376 (485)
Q Consensus       309 ~~~~~----------~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~-~  376 (485)
                      |+|++          .+|++++.||.|++|| ...+....+..|...|.+++|+|++.+|++++.++ |++||+.... .
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            99987          7999999999999999 45677788889999999999999999999999888 9999995443 3


Q ss_pred             eeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc--cceeee---ccCCCCCCccEEEEEEccCCCEEEE
Q 011457          377 LHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ--QAQTIV---QPGSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       377 ~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~---~~~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                      ...+  .+...|.+++|+|++.+++++.|+.|++||+.+++...  .+....   .....+|...|++++|+|+|++|++
T Consensus       249 ~~~~--~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  326 (343)
T 2xzm_R          249 QREF--DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA  326 (343)
T ss_dssp             SEEE--ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred             ceee--cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence            3332  23456999999999955666778899999998876543  221100   0011256778999999999999999


Q ss_pred             EECCCcEEEecCCCC
Q 011457          452 CEADKTIKMWREDET  466 (485)
Q Consensus       452 ~~~Dg~I~iW~~~~~  466 (485)
                      |+.||+|++|+++++
T Consensus       327 g~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          327 GFTDGVIRTFSFETS  341 (343)
T ss_dssp             EETTSEEEEEEEEEE
T ss_pred             ecCCceEEEEEEEcc
Confidence            999999999998653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-44  Score=360.28  Aligned_cols=285  Identities=23%  Similarity=0.411  Sum_probs=268.9

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|...|.++.++|++.++++++.|+.+.+|+...    .+..+.+.+|.+.|++++|+|++++|++|+.|++|+|||+
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            457999999999999999999999999999997644    4567889999999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      .+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.++..+.+|...|.++.|++++++|++|+.|+.|+
T Consensus       180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceEEEeccCCccEEEEEEcCC--------------------CCEEEEEeCCCCEEEEECCCCeEEeEeccCCC
Q 011457          285 VWDIRTKMQIFALAGHDNTVCSVFTRPT--------------------DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK  344 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  344 (485)
                      +||+++++....+.+|...|.++.|+|+                    +.+|++|+.|+.|++||+++++++..+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            9999999999999999999999999996                    67899999999999999999999999999999


Q ss_pred             ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      .|.+++|+|++.+|++++.|+ |++||+.+++.+..+ ..|...|.+++|+|++ +|++|+.||.|++|+++
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999988 999999999887775 5778899999999999 99999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.9e-44  Score=350.32  Aligned_cols=289  Identities=15%  Similarity=0.203  Sum_probs=237.9

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC-----------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-----------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV  241 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-----------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V  241 (485)
                      .|...|.+++|+|||++|++++ |+++++||...           .........+...|.+++|+|++ .|++|+.||+|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            5778899999999999999887 67788886311           11111223366789999999985 68899999999


Q ss_pred             EEEECCCCeeEEE----ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-EE
Q 011457          242 KCWDLEQNKVIRS----YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-QV  316 (485)
Q Consensus       242 ~iwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l  316 (485)
                      +|||+++++.+..    +.+|...|++++|+|++++|++|+.|++|++||+++++.+..+.+|...|.+++|++++. +|
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  185 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF  185 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence            9999998875543    358999999999999999999999999999999999999999999999999999999875 78


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEE
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMA  392 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~  392 (485)
                      ++++.|++|++||+++++....+.  .+...+.+++|+|+ +.+|++++.++ |++||+.+++.+..+ ..|...|.+++
T Consensus       186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~  264 (344)
T 4gqb_B          186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLV  264 (344)
T ss_dssp             EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE-ECCSSCEEEEE
T ss_pred             eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE-cCCCCCEEEEE
Confidence            999999999999999999888764  34557999999995 56888888887 999999999988875 57888999999


Q ss_pred             eCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEECCCcEEEecCCCCCCC
Q 011457          393 VNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       393 ~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      |+|++  +|++|+.||+|+|||+.+++.+..         .+|...|++++|+|+++ +|++++.||+|++|+++....+
T Consensus       265 fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~---------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          265 FSPHSVPFLASLSEDCSLAVLDSSLSELFRS---------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTCCEEEEE---------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             EccCCCeEEEEEeCCCeEEEEECCCCcEEEE---------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            99987  789999999999999998865421         25888999999999986 5678999999999999887665


Q ss_pred             CCCC
Q 011457          470 ETHP  473 (485)
Q Consensus       470 ~~~~  473 (485)
                      ...|
T Consensus       336 ~p~p  339 (344)
T 4gqb_B          336 APGP  339 (344)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            4433

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-43  Score=368.28  Aligned_cols=317  Identities=27%  Similarity=0.515  Sum_probs=287.7

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .+|...|.++.+++++..+++++.++.+.+|...     .+....+.+|.+.|.+++|+|++++|++++.|+.|++||+.
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~  333 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN  333 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-----CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            4678888999999999999999999999999753     46788899999999999999999999999999999999976


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      . .....+.+|...|.+++|+|++++|++++.||.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus       334 ~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~  411 (577)
T 2ymu_A          334 G-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL  411 (577)
T ss_dssp             S-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             C-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence            4 556778899999999999999999999999999999995 57888899999999999999999999999999999999


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      ||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++.+|++++.++
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            995 56788889999999999999999999999999999999996 5778888999999999999999999999999888


Q ss_pred             -EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457          366 -IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD  443 (485)
Q Consensus       366 -i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  443 (485)
                       |++|+. +++.+..+ ..|...|++++|+|++ +|++++.||.|++||. +++.+..+.        +|...|++++|+
T Consensus       490 ~i~iw~~-~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~~~v~~~~fs  558 (577)
T 2ymu_A          490 TVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVWGVAFS  558 (577)
T ss_dssp             EEEEEET-TSCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCSSCEEEEEEC
T ss_pred             EEEEEcC-CCCEEEEE-eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCCCCEEEEEEc
Confidence             999995 67777665 5788899999999999 9999999999999996 555554433        578899999999


Q ss_pred             cCCCEEEEEECCCcEEEec
Q 011457          444 VTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       444 ~~g~~L~s~~~Dg~I~iW~  462 (485)
                      |||++|+|++.||+|++||
T Consensus       559 ~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          559 PDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEeCCCEEEEeC
Confidence            9999999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.5e-43  Score=340.26  Aligned_cols=304  Identities=20%  Similarity=0.362  Sum_probs=264.7

Q ss_pred             CCCcceEEEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCCCc-----eEEEEcccccCEEEEEEcCCCCEEEEE
Q 011457          162 HAPWKCYRVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGT-----LKLTLTGHIEQVRGLAVSSKHTYMFSA  235 (485)
Q Consensus       162 ~~~~~~~~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~s~  235 (485)
                      ....++..+|+||.+.|++|+|+|+ +++|+||+.|++|+|||+.+.+     ....+.+|...|.+++|+|++++|+++
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            3445677889999999999999997 6899999999999999987653     466789999999999999999999999


Q ss_pred             eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE-EEeccCCccEEEEEEcCCC-
Q 011457          236 GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI-FALAGHDNTVCSVFTRPTD-  313 (485)
Q Consensus       236 ~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~~~~~-  313 (485)
                      +.|+.|++|+............+...+..+.+++++++|++|+.|+.+++||+...... ....+|...+..+.|++++ 
T Consensus       105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred             cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence            99999999999999999888889999999999999999999999999999999866543 3456789999999998764 


Q ss_pred             -CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457          314 -PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       314 -~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                       .++++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|++++.|+ |++||+.+.+.+..+.  +...+.++
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~  262 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDIINAL  262 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSCEEEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCceEEee
Confidence             5788999999999999999999999999999999999999999999999988 9999999999887763  34579999


Q ss_pred             EeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeec-cCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          392 AVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQ-PGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       392 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      .++|++.+++++.|+.|++||++++.....+..... .....|...|++++|+|+|++|++|+.||.|+||++.++.
T Consensus       263 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            999999888899999999999998876655432211 1223577889999999999999999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-44  Score=352.18  Aligned_cols=300  Identities=17%  Similarity=0.240  Sum_probs=238.9

Q ss_pred             cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeC------CCeEEEEECCCCce----EEEEcccccC
Q 011457          150 ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSA------DRTIKIWDVAKGTL----KLTLTGHIEQ  219 (485)
Q Consensus       150 ~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~------dg~I~iwd~~~~~~----~~~~~~h~~~  219 (485)
                      +.....|..|..        ...+|.+.|++|+|+|||++|++|+.      |+.|++|+..++..    .....+|...
T Consensus        25 ~~~~~~w~~p~~--------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~   96 (357)
T 4g56_B           25 SSKGSAWGRPVT--------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG   96 (357)
T ss_dssp             -----------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC
T ss_pred             CccccccCCCCC--------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC
Confidence            445566765431        22479999999999999999999997      78899999877653    3344568899


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457          220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR----SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF  295 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  295 (485)
                      |.+++|+|++. +++++.||+|++||+.+++...    ...+|...|++++|+|++++|++|+.|+.|++||+++++.+.
T Consensus        97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~  175 (357)
T 4g56_B           97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK  175 (357)
T ss_dssp             EEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            99999999986 5567889999999998876543    335799999999999999999999999999999999999999


Q ss_pred             EeccCCccEEEEEEcCCCC-EEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCC-CEEEEEcCCC-EEEEE
Q 011457          296 ALAGHDNTVCSVFTRPTDP-QVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTE-DCFASASAEN-IKKFN  370 (485)
Q Consensus       296 ~~~~~~~~v~~l~~~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~~l~~~~~~~-i~i~d  370 (485)
                      .+.+|...|.+++|++++. ++++++.||.|++||+++++....+.  .+...+.+++|+|++ .+|++++.++ |++||
T Consensus       176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd  255 (357)
T 4g56_B          176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN  255 (357)
T ss_dssp             EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred             EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence            9999999999999999875 78999999999999999988776553  456789999999974 6788888776 99999


Q ss_pred             CCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCC
Q 011457          371 LPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGS  447 (485)
Q Consensus       371 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~  447 (485)
                      +.+++.+..+ ..+...|.+++|+|++  +|++|+.||.|+|||+++++.+..         .+|...|++++|+| ++.
T Consensus       256 ~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~---------~~H~~~V~~vafsP~d~~  325 (357)
T 4g56_B          256 IKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD---------LSHRDFVTGVAWSPLDHS  325 (357)
T ss_dssp             SSCGGGCEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE---------CCCSSCEEEEEECSSSTT
T ss_pred             CCCCcEeEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE---------CCCCCCEEEEEEeCCCCC
Confidence            9999888775 5678889999999987  789999999999999998876543         25788999999998 799


Q ss_pred             EEEEEECCCcEEEecCCCCCC
Q 011457          448 RLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       448 ~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      +|++++.||+|++|++.....
T Consensus       326 ~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          326 KFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEEEEETTSCEEEEECC----
T ss_pred             EEEEEcCCCeEEEEECCCCCc
Confidence            999999999999999976543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=343.31  Aligned_cols=286  Identities=21%  Similarity=0.315  Sum_probs=265.2

Q ss_pred             CCCCcceeecccCCC----CcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457          126 SGKSSAIVSTSASSE----RNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI  201 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~----~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i  201 (485)
                      .+|.+.|.+++++++    +.++++++.|+.+++|....  ........+.+|...|.+++|++++.++++++.|++|++
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~--~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l  106 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD--ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL  106 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCC--CCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            468999999998874    56899999999999997543  223455678999999999999999999999999999999


Q ss_pred             EECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457          202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS  281 (485)
Q Consensus       202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg  281 (485)
                      ||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||+++++....+..|...|.+++|+|++++|++|+.||
T Consensus       107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg  186 (321)
T 3ow8_A          107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG  186 (321)
T ss_dssp             EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457          282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA  361 (485)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~  361 (485)
                      .|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++.++....+.+|...|.+++|+|++.+|+++
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  266 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS  266 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          362 SAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       362 ~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      +.|+ |++||+.+++.+..+ ..|...|.+++|++++ +|++++.||.|++||..
T Consensus       267 s~D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          267 SSDKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             eCCCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9887 999999999988886 5678889999999999 99999999999999963

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-43  Score=348.16  Aligned_cols=283  Identities=24%  Similarity=0.462  Sum_probs=250.2

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc------------------CEEEEEEcCCCCEEEE
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE------------------QVRGLAVSSKHTYMFS  234 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~------------------~V~~l~~s~~~~~l~s  234 (485)
                      +|.+.|++++|+|+|++|++|+ |+.++||++.+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999986 68999999999998888866542                  3999999999999999


Q ss_pred             EeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CC
Q 011457          235 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TD  313 (485)
Q Consensus       235 ~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~  313 (485)
                      |+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+. +...+.+++++| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999999999999998887776 667899999999 89


Q ss_pred             CEEEEEeCCCCEEEEECCCCeEEeEe-------ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce---------
Q 011457          314 PQVVTGSHDSTIKFWDLRYGKTMLTL-------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF---------  376 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~---------  376 (485)
                      .+|++|+.||.|++||+++++.+..+       .+|...|.+++|+|++.+|++++.++ |++||+.+...         
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~  299 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  299 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence            99999999999999999999887776       56888999999999999999999888 99999976432         


Q ss_pred             ---eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc------CC
Q 011457          377 ---LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV------TG  446 (485)
Q Consensus       377 ---~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~------~g  446 (485)
                         ... ..+|...|.++++++++ +|++|+.||.|++||+.+++.+..+.        +|...|.+++|++      ++
T Consensus       300 ~~~~~~-~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--------~h~~~v~~v~~~~~~~~~p~~  370 (393)
T 1erj_A          300 GTCEVT-YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--------GHRNSVISVAVANGSSLGPEY  370 (393)
T ss_dssp             -CEEEE-EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECSSCTTCTTC
T ss_pred             CcceEE-EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--------CCCCCEEEEEecCCcCcCCCC
Confidence               222 35677889999999998 99999999999999999988765544        4788899999986      68


Q ss_pred             CEEEEEECCCcEEEecCCCC
Q 011457          447 SRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       447 ~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      ++|++|+.||+|+||++...
T Consensus       371 ~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          371 NVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEEEETTSEEEEEEEEEC
T ss_pred             CEEEEECCCCcEEECccccc
Confidence            89999999999999998643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-42  Score=334.78  Aligned_cols=318  Identities=16%  Similarity=0.284  Sum_probs=277.3

Q ss_pred             CcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 011457          129 SSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT  208 (485)
Q Consensus       129 ~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~  208 (485)
                      ...+.+.++++++..++.+..+.....|..+.   ..+.+. ..+|.+.|++++|+|++++|++++ ||.|++||+.+++
T Consensus         9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---HARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEECCEEEECSSSCEEECCCCTTSSSSTTCCS---EEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred             CCceeEEEECCCCCEEEeecCCCcEeccccCC---ccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence            44567788999999988777666666664432   223333 348999999999999999999998 9999999998765


Q ss_pred             e---EEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457          209 L---KLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK--VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS  281 (485)
Q Consensus       209 ~---~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg  281 (485)
                      .   ...+.  +|...|.+++|+|++++|++++.||.|++||+.+++  ....+..|...|.+++|+|++++|++++.||
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  163 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG  163 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence            3   33333  789999999999999999999999999999999887  6677788999999999999999999999999


Q ss_pred             cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457          282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA  361 (485)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~  361 (485)
                      .|++||+++++.+..+..|...+.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++.+++++
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~  242 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred             cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999998887775 57789999999999999999


Q ss_pred             cCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEE
Q 011457          362 SAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA  439 (485)
Q Consensus       362 ~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~  439 (485)
                      +.++ +++|++.+++...  ...+...+.++.|++++ +|++++.||.|++||+.+++.....         .+...|.+
T Consensus       243 ~~~~~i~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---------~~~~~v~~  311 (337)
T 1gxr_A          243 MESSNVEVLHVNKPDKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---------KESSSVLS  311 (337)
T ss_dssp             ETTSCEEEEETTSSCEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------ECSSCEEE
T ss_pred             cCCCcEEEEECCCCCeEE--EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---------cCCCcEEE
Confidence            8776 9999999887643  35678889999999999 9999999999999999998766332         35678999


Q ss_pred             EEEccCCCEEEEEECCCcEEEecC
Q 011457          440 LSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       440 l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      ++|+|++++|++++.||.|++|++
T Consensus       312 ~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          312 CDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEECCCCCEEEEecCCCeEEEEEE
Confidence            999999999999999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-42  Score=335.96  Aligned_cols=290  Identities=22%  Similarity=0.393  Sum_probs=261.3

Q ss_pred             CCCCCcceeecccCCCC-cccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457          125 ASGKSSAIVSTSASSER-NLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW  202 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~-~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw  202 (485)
                      ..+|...|.++.+++++ .++++++.|+.+++|........ ..+++.+.+|.+.|++++|+|++++|++|+.|++|+||
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w   92 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW   92 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            35799999999999865 78999999999999976543222 34678899999999999999999999999999999999


Q ss_pred             ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC------CCEEEE
Q 011457          203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT------IDILLT  276 (485)
Q Consensus       203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~------~~~l~s  276 (485)
                      |+.+++....+.+|...|.+++|+|++.+|++|+.|++|++||++ ++++..+.+|...|.++.|+|.      +..|++
T Consensus        93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s  171 (319)
T 3frx_A           93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS  171 (319)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEE
T ss_pred             ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEE
Confidence            999999999999999999999999999999999999999999996 5677888899999999999985      448999


Q ss_pred             EECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCC
Q 011457          277 GGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED  356 (485)
Q Consensus       277 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~  356 (485)
                      ++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++.||.|++||+++++.+..+..+ ..|.+++|+|++.
T Consensus       172 ~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~  250 (319)
T 3frx_A          172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRY  250 (319)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSS
T ss_pred             EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999998888754 6799999999999


Q ss_pred             EEEEEcCCCEEEEECCCCceeeeecc-------CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          357 CFASASAENIKKFNLPKGEFLHNMLS-------QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       357 ~l~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      ++++++.+++++|++..+..+..+..       .+...+.+++|+|+| +|++|+.||.|++||+.++
T Consensus       251 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            99999999999999988776665432       234568999999999 9999999999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.4e-42  Score=356.49  Aligned_cols=320  Identities=27%  Similarity=0.515  Sum_probs=288.3

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .+|...|.++.+++++..+++++.+..+.+|+..     .+.+..+.+|...|++++|+|++++|++++.|+.|++||. 
T Consensus       218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-----~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-  291 (577)
T 2ymu_A          218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-  291 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-----SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-
T ss_pred             ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-----CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-
Confidence            4577888999999999999999999999999743     4678899999999999999999999999999999999996 


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      +++....+.+|...|.+++|+|++++|++++.|+.|++||+.. ..+..+.+|...|.+++|+|++++|++|+.||.|++
T Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            5677888999999999999999999999999999999999764 556778889999999999999999999999999999


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      ||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++.+|++++.++
T Consensus       371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~  448 (577)
T 2ymu_A          371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK  448 (577)
T ss_dssp             EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence            995 57788889999999999999999999999999999999995 5788888999999999999999999999999888


Q ss_pred             -EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457          366 -IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD  443 (485)
Q Consensus       366 -i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  443 (485)
                       +++|+. +++.+..+ ..|...+.+++|+|++ +|++++.|+.|++||. +++.+..+.        .|...|++++|+
T Consensus       449 ~v~~w~~-~~~~~~~~-~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~--------~h~~~v~~l~~s  517 (577)
T 2ymu_A          449 TVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVRGVAFS  517 (577)
T ss_dssp             EEEEEET-TSCEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE--------CCSSCEEEEEEC
T ss_pred             EEEEEEC-CCCEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe--------CCCCCEEEEEEc
Confidence             999996 45555554 5678899999999999 9999999999999995 555554443        478889999999


Q ss_pred             cCCCEEEEEECCCcEEEecCCC
Q 011457          444 VTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       444 ~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      |+|++|++++.||.|+|||...
T Consensus       518 ~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          518 PDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTTS
T ss_pred             CCCCEEEEEECcCEEEEEeCCC
Confidence            9999999999999999999753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.6e-42  Score=335.37  Aligned_cols=282  Identities=19%  Similarity=0.378  Sum_probs=260.2

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|...|.++.+++++.++++++.|+.+++|+...    .+....+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            346889999999999999999999999999997643    4677888999999999999999999999999999999999


Q ss_pred             CCC----ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457          205 AKG----TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       205 ~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      .+.    .....+.+|...|.++.|++++. +++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.|
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence            875    35667889999999999998875 8899999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--CCceEEEEECCCCCEE
Q 011457          281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTEDCF  358 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~l  358 (485)
                      +.|++||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..+  ...|.+++|+|++.+|
T Consensus       206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999888777543  3479999999999999


Q ss_pred             EEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          359 ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       359 ~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      ++++.++ |++||+.+++.+..+ .+|...|.+++|+|++ +|++|+.||.|++||
T Consensus       286 ~~g~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          286 LAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999988 999999999887765 6788899999999999 999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.1e-42  Score=337.19  Aligned_cols=286  Identities=17%  Similarity=0.247  Sum_probs=242.2

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCC-------CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEE
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW-------HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIK  200 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~-------~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~  200 (485)
                      +...|.+..|+++|.++++++ +..+++|...-+       ............|...|++++|+|++ .|++|+.||+|+
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~  106 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE  106 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence            456688899999999998776 778899963211       11122223334577889999999985 688999999999


Q ss_pred             EEECCCCceEEE----EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEE
Q 011457          201 IWDVAKGTLKLT----LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILL  275 (485)
Q Consensus       201 iwd~~~~~~~~~----~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~  275 (485)
                      |||+.+++....    +.+|.+.|++++|+|++++|++|+.|++|++||+++++++..+.+|...|.+++|++++. +|+
T Consensus       107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  186 (344)
T 4gqb_B          107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL  186 (344)
T ss_dssp             EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEE
T ss_pred             EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCcee
Confidence            999998875543    458999999999999999999999999999999999999999999999999999999874 789


Q ss_pred             EEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEEC
Q 011457          276 TGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH  352 (485)
Q Consensus       276 sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~  352 (485)
                      +|+.|++|++||+++++....+.  .+...+.+++|+|+ +.+|++|+.||+|++||+++++++..+.+|...|++++|+
T Consensus       187 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fs  266 (344)
T 4gqb_B          187 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS  266 (344)
T ss_dssp             EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEEC
T ss_pred             eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            99999999999999999888775  45567999999985 5688999999999999999999999999999999999999


Q ss_pred             CCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCc
Q 011457          353 PTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       353 p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~  417 (485)
                      |++ .+|++++.|+ |++||+.+++...  ..+|...|.+++|+|++  +|++|+.||+|++|++.+..
T Consensus       267 p~g~~~lasgs~D~~i~vwd~~~~~~~~--~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          267 PHSVPFLASLSEDCSLAVLDSSLSELFR--SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SSSSCCEEEEETTSCEEEECTTCCEEEE--ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             cCCCeEEEEEeCCCeEEEEECCCCcEEE--EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            998 5788888877 9999999987654  35788999999999988  67799999999999998643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-43  Score=348.71  Aligned_cols=325  Identities=16%  Similarity=0.219  Sum_probs=283.5

Q ss_pred             CCcceeecccCCCCc-ccccccccCCCCCCCC----CCCCCCcc--eEEEEec----------CCcceEEEEEccCCCEE
Q 011457          128 KSSAIVSTSASSERN-LSTSAIMERIPSKWPR----PEWHAPWK--CYRVISG----------HLGWVRSVAFDHSNTWF  190 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~----~~~~~~~~--~~~~l~~----------H~~~V~~l~~sp~~~~l  190 (485)
                      |...|.++.+++++. ++++++.+..+.+|..    .....-|+  ....+..          |.+.|++++|+|++++|
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  123 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI  123 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence            557788999999999 9999999999999987    43221111  2333433          78899999999999999


Q ss_pred             EEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc---------
Q 011457          191 CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG---------  261 (485)
Q Consensus       191 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~---------  261 (485)
                      ++|+.||.|++|| .+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...         
T Consensus       124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (425)
T 1r5m_A          124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH  202 (425)
T ss_dssp             EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred             EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence            9999999999999 678888999999999999999999999999999999999999999999999877776         


Q ss_pred             ------eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          262 ------VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       262 ------v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                            +.+++|++++ .+++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus       203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          203 SGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ---CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             cCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence                  9999999984 689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          336 MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       336 ~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      +..+..|...|.+++|+|++ ++++++.++ |++||+.+++.+..+ ..+...+.++.|+|++ +|++++.||.|++||+
T Consensus       282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-ECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-ccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            99999999999999999999 888888777 999999999887775 4667889999999999 9999999999999999


Q ss_pred             CCCc--------------------ccccceeeeccCCCCCCc--cEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          414 KSGH--------------------NFQQAQTIVQPGSLDSEA--GIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       414 ~~~~--------------------~~~~~~~~~~~~~~~~~~--~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .+++                    .+..+.        .|..  .|++++|+|++++|++++.||.|++|+++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQ--------SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             HHHHC--------------CEECCEEEEEC--------CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CCCccceeeeecccccccCcccchhhhhhc--------CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            8766                    222221        3433  89999999999999999999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-41  Score=328.40  Aligned_cols=292  Identities=15%  Similarity=0.244  Sum_probs=266.9

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      ......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            44556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCc-----------eEEEeccCCc--cEEE
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKM-----------QIFALAGHDN--TVCS  306 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~  306 (485)
                      |+.+++.+..+. +...|.+++|+|++++|++++.+     |.|++||+....           .+..+..|..  .+.+
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            999999999988 88999999999999999999999     999999998653           3444555666  9999


Q ss_pred             EEEcCCCCEEEEEeCCCCEEEEECCC-CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC
Q 011457          307 VFTRPTDPQVVTGSHDSTIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ  384 (485)
Q Consensus       307 l~~~~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~  384 (485)
                      ++|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.++ |++||+.+++.+..+.  +
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~  258 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--T  258 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--C
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--C
Confidence            99999999999999999999999998 788889999999999999999999999999887 9999999999888764  6


Q ss_pred             cccEEEEEeCCCC-eEEEEeCCC--------------cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEE
Q 011457          385 KTIINSMAVNEEG-VLATGGDNG--------------SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRL  449 (485)
Q Consensus       385 ~~~i~~~~~~~~~-~l~sg~~dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L  449 (485)
                      ...+.++.+++++ ++++++.++              .+++||..+++.+..+.        .|...|++++|+|++++|
T Consensus       259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--------GHFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEE
T ss_pred             CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--------cccCcEEEEEECCCCCEE
Confidence            6789999999999 888998888              89999999988776654        477889999999999999


Q ss_pred             EEEECCCcEEEecCCCCC
Q 011457          450 VTCEADKTIKMWREDETA  467 (485)
Q Consensus       450 ~s~~~Dg~I~iW~~~~~~  467 (485)
                      ++++.||.|++|+++...
T Consensus       331 ~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          331 ASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEETTSEEEEEEECHHH
T ss_pred             EEEcCCCeEEEEECcccc
Confidence            999999999999998654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-41  Score=362.12  Aligned_cols=298  Identities=21%  Similarity=0.372  Sum_probs=257.1

Q ss_pred             cceEEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCC-----ceEEEEcccccCEEEEEEcCCCCEEEEEeCC
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKG-----TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  238 (485)
                      .+....+++|.+.|++|+|+|++ ++|+||+.|++|+|||+.+.     .....+.+|...|.+++|+|++++|++|+.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            45677899999999999999864 79999999999999999763     3567789999999999999999999999999


Q ss_pred             CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---ccCCccEEEEEEcCCC--
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---AGHDNTVCSVFTRPTD--  313 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~--  313 (485)
                      |+|++||+.+++.++.+.+|...|.+++|+|++++|++|+.|++|++||+.........   .+|...|.+++|+|++  
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            99999999999999999999999999999999999999999999999998755433332   3688899999999986  


Q ss_pred             CEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEE
Q 011457          314 PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMA  392 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~  392 (485)
                      ..|++++.|++|++||+++++....+..|...|.+++|+|++.+|++++.++ |++||+.+++.+..+.  +...+.+++
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~  609 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALC  609 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEE
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEE
Confidence            6899999999999999999999999999999999999999999999999887 9999999998887653  456799999


Q ss_pred             eCCCCeEEEEeCCCcEEEEeCCCCcccccceeeecc-----------CCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          393 VNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQP-----------GSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       393 ~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      |+|++.+++++.++.|++||+.++..+..+......           ....+...+++++|+|+|++|++|+.||+|+||
T Consensus       610 ~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW  689 (694)
T 3dm0_A          610 FSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW  689 (694)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEE
Confidence            999996666666778999999998776554321110           001122348899999999999999999999999


Q ss_pred             cCC
Q 011457          462 RED  464 (485)
Q Consensus       462 ~~~  464 (485)
                      ++.
T Consensus       690 ~i~  692 (694)
T 3dm0_A          690 GIG  692 (694)
T ss_dssp             EC-
T ss_pred             ecc
Confidence            985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.4e-41  Score=330.30  Aligned_cols=282  Identities=19%  Similarity=0.369  Sum_probs=259.2

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .+|...|.++.+++++.++++++.|..+++|+..    +.+....+..|...|.+++|+|++.+|++|+.|+.+++|++.
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~----~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~  136 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF----TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT  136 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC----CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence            4799999999999999999999999999999754    356677888999999999999999999999999999999986


Q ss_pred             CC------ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec--CCCEEEEE
Q 011457          206 KG------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP--TIDILLTG  277 (485)
Q Consensus       206 ~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~sg  277 (485)
                      ..      .....+.+|...|.+++|+|++.+|++++.|++|++||+++++++..+.+|...|.+++|+|  ++++|++|
T Consensus       137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg  216 (354)
T 2pbi_B          137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG  216 (354)
T ss_dssp             CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred             ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence            43      34567788999999999999999999999999999999999999999999999999999988  46899999


Q ss_pred             ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--CCceEEEEECCCC
Q 011457          278 GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTE  355 (485)
Q Consensus       278 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~  355 (485)
                      +.||.|++||+++++++..+.+|...|.+++|+|++.+|++++.|++|++||++.++.+..+..+  ...+.+++|+|++
T Consensus       217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g  296 (354)
T 2pbi_B          217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG  296 (354)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred             eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999998887776543  3478999999999


Q ss_pred             CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          356 DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      .++++++.++ |++||+.+++.+..+ ..|...|.+++|+|++ +|++|+.||.|++|+
T Consensus       297 ~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          297 RLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCcEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999887 999999999887765 5788899999999999 999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.8e-41  Score=323.78  Aligned_cols=285  Identities=24%  Similarity=0.370  Sum_probs=256.3

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|.+.|.++.++|+++++++++.|+.+++|+...    .+.++.+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            346888999999999999999999999999997643    5678899999999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEec-CCCEEEEEECCCc
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSV  282 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~  282 (485)
                      .+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999887 56677889999999999999 6789999999999


Q ss_pred             EEEEECCCCceEEEec-cCCccEEEEEEcC--CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          283 CRVWDIRTKMQIFALA-GHDNTVCSVFTRP--TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      |++||+++......+. +|...+..+.+++  ++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++.+|+
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  244 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII  244 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence            9999998887766654 5668899999986  678999999999999999999999999999999999999999999999


Q ss_pred             EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCC
Q 011457          360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~  415 (485)
                      +++.|+ |++||..+++.+..+ ..+...+.+++++|++   ++++|++| .+.+|++..
T Consensus       245 s~s~Dg~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          245 SGSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             EEETTSCEEEEETTTCCEEEEE-CCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred             EEcCCCeEEEEECCCCceeeec-cCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence            999887 999999999988876 4567789999998877   46766655 567777654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-41  Score=337.92  Aligned_cols=297  Identities=16%  Similarity=0.251  Sum_probs=261.8

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc------eEEEEcccccCEEEEEEcCC----C---CE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT------LKLTLTGHIEQVRGLAVSSK----H---TY  231 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~------~~~~~~~h~~~V~~l~~s~~----~---~~  231 (485)
                      .+....+.+|.+.|++++|+|  ++|++|+.||.|++||+.+++      ....+.+|...|.+++|+|+    +   .+
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            356677889999999999998  899999999999999999988      78889999999999999999    9   99


Q ss_pred             EEEEeCCCcEEEEECCCCee-----EEEeccc-----CCceEEEEEe----cCCCE-EEEEECCCcEEEEECCC------
Q 011457          232 MFSAGDDKQVKCWDLEQNKV-----IRSYHGH-----LSGVYCLGLH----PTIDI-LLTGGRDSVCRVWDIRT------  290 (485)
Q Consensus       232 l~s~~~dg~V~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~~-l~sg~~dg~i~iwd~~~------  290 (485)
                      |++++.||.|++||+.+++.     +..+..|     ...|.+++|+    |++++ |++++.||.|++||+++      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999998887     8888888     5999999999    99999 99999999999999998      


Q ss_pred             CceEE-----Ee-------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---C---CCceEEEEEC
Q 011457          291 KMQIF-----AL-------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---H---KKSVRAMALH  352 (485)
Q Consensus       291 ~~~~~-----~~-------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~---~~~v~~l~~~  352 (485)
                      ++.+.     .+       ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+..   |   ...|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            66655     66       4488999999999999 999999999999999999999999988   8   8999999999


Q ss_pred             CCCCEEEEEcCC---C-EEEEECCCCceeeeeccC------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          353 PTEDCFASASAE---N-IKKFNLPKGEFLHNMLSQ------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       353 p~~~~l~~~~~~---~-i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      |++.+|++++.+   + |++||+.+++.+..+...            +...|.++.|+|++ +|++++.||.|++||+.+
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999987   5 999999999988876431            78899999999999 999999999999999999


Q ss_pred             CcccccceeeeccCCCCC---------------CccEEEEEEccCC----------CEEEEEECCCcEEEecCCCC
Q 011457          416 GHNFQQAQTIVQPGSLDS---------------EAGIYALSYDVTG----------SRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~---------------~~~V~~l~~s~~g----------~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      ++.+..+.....  ...|               ...|++++|+|+|          ++|++++.||.|++|++.++
T Consensus       323 ~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          323 KERITTLNMHCD--DIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TEEEEEEECCGG--GCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             CceeEEEecccC--cccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            887766652110  0123               7889999999998          79999999999999998765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-42  Score=345.31  Aligned_cols=328  Identities=13%  Similarity=0.162  Sum_probs=276.9

Q ss_pred             eecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q 011457          133 VSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT  212 (485)
Q Consensus       133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~  212 (485)
                      ....+++++..+++++.++.+.+|......    ....+..| ..+....|++++++|++|+.||.|++||+.+++....
T Consensus        60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  134 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRD----GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI  134 (420)
T ss_dssp             TTCEEEEEETTEEEEEETTEEEEEECCSEE----TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cceeeeecCCeEEEEEcCCcEEEEEecccc----eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence            356788999999999999999999865432    22333455 4555667899999999999999999999999999888


Q ss_pred             EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      +.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecc---CCccEEEEE---------------------EcCCCCEEEEEeCCCCEEEEECCCCeEEeEec-cCCCceE
Q 011457          293 QIFALAG---HDNTVCSVF---------------------TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT-HHKKSVR  347 (485)
Q Consensus       293 ~~~~~~~---~~~~v~~l~---------------------~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~  347 (485)
                      .+..+..   +...+.++.                     |+|++++|++++.||.|++||+++++.+..+. .|...|.
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  294 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN  294 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence            9888874   344555554                     47889999999999999999999998877765 4778999


Q ss_pred             EEEECCCCC-EEEEEcCCC-EEEEECCCCce-eeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          348 AMALHPTED-CFASASAEN-IKKFNLPKGEF-LHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       348 ~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      +++|+|++. +|++++.++ |++||+.+++. +..+..++...+.++.+.++.+|++++.||.|++||+...........
T Consensus       295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~  374 (420)
T 3vl1_A          295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE  374 (420)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred             eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence            999999999 999999887 99999998865 566666678889999877555999999999999999987543322211


Q ss_pred             eecc-CCCCCCccEEEEEEccCCC---EEEEEECCCcEEEecCCC
Q 011457          425 IVQP-GSLDSEAGIYALSYDVTGS---RLVTCEADKTIKMWREDE  465 (485)
Q Consensus       425 ~~~~-~~~~~~~~V~~l~~s~~g~---~L~s~~~Dg~I~iW~~~~  465 (485)
                      ...+ ....+...|.+++|+|+++   .|++++.+|.+.+|++++
T Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            1110 1235677899999999999   888899999999999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=330.01  Aligned_cols=293  Identities=21%  Similarity=0.380  Sum_probs=246.5

Q ss_pred             CCCc-ceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEE-EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          127 GKSS-AIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYR-VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       127 ~~~~-~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~-~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      +|.. .+..++++|++.++++++.|+.+++|.....  .+.... ...+|.+.|++++|+|++++|++|+.|++|+|||+
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~   90 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK   90 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT--EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC--cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence            4655 7899999999999999999999999975431  122222 33689999999999999999999999999999998


Q ss_pred             CCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEecccCCceEEEEEecCCCEEEEEEC
Q 011457          205 AKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGGR  279 (485)
Q Consensus       205 ~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~  279 (485)
                      ..+.  .+..+.+|...|.+++|+|++++|++|+.|++|++||+.++   +++..+.+|...|.+++|+|++++|++|+.
T Consensus        91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  170 (345)
T 3fm0_A           91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY  170 (345)
T ss_dssp             CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred             cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence            8764  56788999999999999999999999999999999999876   456778899999999999999999999999


Q ss_pred             CCcEEEEECCCCc--eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC---------------eEEeEecc-
Q 011457          280 DSVCRVWDIRTKM--QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG---------------KTMLTLTH-  341 (485)
Q Consensus       280 dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~---------------~~~~~~~~-  341 (485)
                      |+.|++||++++.  +...+.+|...|.+++|+|++++|++++.|++|++||....               +++..+.. 
T Consensus       171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T 3fm0_A          171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF  250 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred             CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence            9999999998875  45678899999999999999999999999999999996322               23444444 


Q ss_pred             CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc--------eeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEE
Q 011457          342 HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE--------FLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWF  410 (485)
Q Consensus       342 ~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~i  410 (485)
                      |...|.+++|+|++..|++++.++ |++|+...+.        ........|...|++++|+|++  +|++|+.||.|++
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~  330 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF  330 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence            778999999999999999988887 9999987543        1222345788899999999986  8999999999999


Q ss_pred             EeCCCCccccc
Q 011457          411 WDWKSGHNFQQ  421 (485)
Q Consensus       411 wd~~~~~~~~~  421 (485)
                      |++.+++....
T Consensus       331 W~~~~~~~~~~  341 (345)
T 3fm0_A          331 WKYQRPEGLHH  341 (345)
T ss_dssp             EEECC------
T ss_pred             EEecCCCCccc
Confidence            99988765543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.7e-42  Score=335.73  Aligned_cols=288  Identities=20%  Similarity=0.263  Sum_probs=241.4

Q ss_pred             CCCcceeecccCCCCcccccccccC------CCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEE
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMER------IPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIK  200 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~------~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~  200 (485)
                      .|...|.++.|+|+|.++++++.+.      .+.+|..+.............+|.+.|++++|+|++. +++++.||+|+
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~  118 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE  118 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence            4888999999999999999998753      3445555554445555666678999999999999986 55678899999


Q ss_pred             EEECCCCceE----EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEE
Q 011457          201 IWDVAKGTLK----LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILL  275 (485)
Q Consensus       201 iwd~~~~~~~----~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~  275 (485)
                      |||+.+++..    ....+|...|++++|+|++++|++|+.|+.|++||+++++.+..+.+|...|++++|+++++ +++
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~  198 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL  198 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence            9999887643    34557999999999999999999999999999999999999999999999999999999875 889


Q ss_pred             EEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEEC
Q 011457          276 TGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH  352 (485)
Q Consensus       276 sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~  352 (485)
                      +++.||.|++||+++++.+..+.  .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|...|.+++|+
T Consensus       199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s  278 (357)
T 4g56_B          199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS  278 (357)
T ss_dssp             EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC
T ss_pred             eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc
Confidence            99999999999999988766543  56778999999997 4688999999999999999999999999999999999999


Q ss_pred             CCC-CEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCc
Q 011457          353 PTE-DCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       353 p~~-~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                      |++ .+|++++.|+ |++||+.+++.+..+  .|...|++++|+| ++ +|++++.||+|++||+.+..
T Consensus       279 p~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          279 YHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            987 5788888876 999999999877653  6888999999998 56 99999999999999997643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-40  Score=316.52  Aligned_cols=291  Identities=18%  Similarity=0.351  Sum_probs=260.0

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK  242 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~  242 (485)
                      .++++.+.+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.+|++++.||.|+
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            467889999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCC---eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC-CCCEEEE
Q 011457          243 CWDLEQN---KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP-TDPQVVT  318 (485)
Q Consensus       243 iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s  318 (485)
                      +|++...   +.+..+.+|...|.+++|  ++++|++++.||.|++||  .++.+..+..|...+.++.+.+ ++.++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            9998754   567788899999999999  567999999999999999  6778888889999999999988 8999999


Q ss_pred             EeCCCCEEEEECCCCeEEeEecc-CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEE  396 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  396 (485)
                      ++.||.|++||  ..+....+.. +...+.+++|+|++. +++++.++ |++||+.+++.+..+ ..+...+.+++|+|+
T Consensus       161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~  236 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY-EGHESFVYCIKLLPN  236 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTT
T ss_pred             EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh-hcCCceEEEEEEecC
Confidence            99999999999  5566777776 888999999999999 66666666 999999999988876 567889999999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457          397 GVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET  471 (485)
Q Consensus       397 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~  471 (485)
                      +.|++++.||.|++||+.+++....+.        .+...|++++|+|+++ |++++.||.|++|++.++.....
T Consensus       237 ~~l~~~~~dg~v~iwd~~~~~~~~~~~--------~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          237 GDIVSCGEDRTVRIWSKENGSLKQVIT--------LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             SCEEEEETTSEEEEECTTTCCEEEEEE--------CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             CCEEEEecCCEEEEEECCCCceeEEEe--------ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence            999999999999999999988766654        3566899999999998 66799999999999988765443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.6e-41  Score=327.88  Aligned_cols=288  Identities=21%  Similarity=0.353  Sum_probs=247.4

Q ss_pred             CCCCcceeeccc-----CC-CCcccccccccCCCCCCCCCCCCC---CcceEEEEecCCcceEEEEEccCCCEEEEEeCC
Q 011457          126 SGKSSAIVSTSA-----SS-ERNLSTSAIMERIPSKWPRPEWHA---PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD  196 (485)
Q Consensus       126 ~~~~~~i~~~~~-----~~-~~~~~~t~~~~~~~~~w~~~~~~~---~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d  196 (485)
                      .+|...|.++.+     ++ ++.++++++.|+.+++|.......   ...+...+.+|.+.|++++|+|++.+|++|+.|
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD   97 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence            468888988877     55 888999999999999997654322   234677899999999999999999999999999


Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cccCCceEEEEEecCC--
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---HGHLSGVYCLGLHPTI--  271 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~--  271 (485)
                      ++|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+... .....   .+|...|.+++|+|++  
T Consensus        98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~  176 (343)
T 2xzm_R           98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKS  176 (343)
T ss_dssp             SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred             CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecccccc
Confidence            99999999999999999999999999999999999999999999999999844 33333   2788999999999986  


Q ss_pred             --------CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-eEEeEeccC
Q 011457          272 --------DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-KTMLTLTHH  342 (485)
Q Consensus       272 --------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~  342 (485)
                              .+|++++.||.|++|| ...+....+.+|...|.+++|+|++++|++|+.||.|++||+... .....+ .+
T Consensus       177 ~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~  254 (343)
T 2xzm_R          177 ANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DA  254 (343)
T ss_dssp             CSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-EC
T ss_pred             ccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cC
Confidence                    7999999999999999 456677788899999999999999999999999999999999543 333333 34


Q ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceee--eec----------cCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457          343 KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLH--NML----------SQQKTIINSMAVNEEG-VLATGGDNGSLW  409 (485)
Q Consensus       343 ~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~--~~~----------~~~~~~i~~~~~~~~~-~l~sg~~dg~I~  409 (485)
                      ...|.+++|+|++.++++++++++++|++.+++...  .+.          ..+...+.+++|+|++ +|++|+.||.|+
T Consensus       255 ~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~  334 (343)
T 2xzm_R          255 GSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR  334 (343)
T ss_dssp             SSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEE
T ss_pred             CCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEE
Confidence            567999999999999998888889999998776433  221          1466789999999999 999999999999


Q ss_pred             EEeCCCC
Q 011457          410 FWDWKSG  416 (485)
Q Consensus       410 iwd~~~~  416 (485)
                      +|++.++
T Consensus       335 ~w~~~~g  341 (343)
T 2xzm_R          335 TFSFETS  341 (343)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcc
Confidence            9998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.9e-41  Score=331.27  Aligned_cols=291  Identities=19%  Similarity=0.245  Sum_probs=250.2

Q ss_pred             CcceEEEEecCCcceEEEEEccCC-CEEEEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcC-CCCEEEEEeCCC
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSS-KHTYMFSAGDDK  239 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~-~~~~l~s~~~dg  239 (485)
                      ++++.+.+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+.  +|...|.+++|+| ++.+|++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            467888999999999999999999 999999999999999999888877775  6999999999999 779999999999


Q ss_pred             cEEEEECCCCeeEEEecc---cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-E
Q 011457          240 QVKCWDLEQNKVIRSYHG---HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-Q  315 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~  315 (485)
                      .|++||+.+ ..+..+..   |...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            999999986 55555543   4488999999999999999999999999999 5778889999999999999999999 9


Q ss_pred             EEEEeCCCCEEEEECCC----CeEEeEeccCCCceEEEEECC-CCCEEEEEcCCC-EEEEECCCCceeeeeccCC-----
Q 011457          316 VVTGSHDSTIKFWDLRY----GKTMLTLTHHKKSVRAMALHP-TEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ-----  384 (485)
Q Consensus       316 l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~-----  384 (485)
                      |++++.|+.|++||+++    +..+..+ .|...|.+++|+| ++.+|++++.++ |++||+.+++....+..+.     
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  298 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ  298 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence            99999999999999998    5566666 6889999999999 999999999887 9999999887765543221     


Q ss_pred             -----------cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457          385 -----------KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       385 -----------~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                                 ...+..+.+++++.+ +|+.||.|++||+.+++.+..+..      ..+...+..++|+|+|++|++|+
T Consensus       299 ~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~------~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          299 HLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRD------PNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             TSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECB------TTBCSCCCEEEECTTSSEEEEEE
T ss_pred             cccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecC------CCCCceEEEEEEecCccEEEEec
Confidence                       134455777777744 888999999999999987666542      12456677889999999999997


Q ss_pred             CCCcEEEecCCC
Q 011457          454 ADKTIKMWREDE  465 (485)
Q Consensus       454 ~Dg~I~iW~~~~  465 (485)
                       ||.|+||++++
T Consensus       372 -d~~i~iw~~~~  382 (383)
T 3ei3_B          372 -GFNILIWNRED  382 (383)
T ss_dssp             -TTEEEEEECC-
T ss_pred             -CCcEEEEecCC
Confidence             99999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-42  Score=347.38  Aligned_cols=334  Identities=14%  Similarity=0.212  Sum_probs=280.7

Q ss_pred             cceeecccCCCCc-ccccc----------cccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCe
Q 011457          130 SAIVSTSASSERN-LSTSA----------IMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRT  198 (485)
Q Consensus       130 ~~i~~~~~~~~~~-~~~t~----------~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~  198 (485)
                      ..+.+++++|++. +++++          +.|..+.+|........ +++..+ .|.+.|++++|+|++++|++|+.||.
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-cEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence            3456677888876 77777          78899999976543211 223333 58999999999999999999999999


Q ss_pred             EEEEECCC----CceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe------eEE---EecccCCceEE
Q 011457          199 IKIWDVAK----GTLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNK------VIR---SYHGHLSGVYC  264 (485)
Q Consensus       199 I~iwd~~~----~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~------~~~---~~~~h~~~v~~  264 (485)
                      |++||+.+    .+....+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++      ...   .+..|...|.+
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS  170 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence            99999987    4578889999999999999998 8999999999999999999886      333   33679999999


Q ss_pred             EEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccC------CccEEEEEEcCCC-CEEEEEeCCC---CEEEEECCCC
Q 011457          265 LGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGH------DNTVCSVFTRPTD-PQVVTGSHDS---TIKFWDLRYG  333 (485)
Q Consensus       265 l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~-~~l~s~s~dg---~I~iwd~~~~  333 (485)
                      ++|+|+ +.+|++++.||.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .|++||++++
T Consensus       171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            999999 789999999999999999999999888876      7899999999997 6899999999   9999999986


Q ss_pred             -eEEeEec-cCCCceEEEEECC-CCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCc
Q 011457          334 -KTMLTLT-HHKKSVRAMALHP-TEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGS  407 (485)
Q Consensus       334 -~~~~~~~-~~~~~v~~l~~~p-~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~  407 (485)
                       ..+..+. .|...|.+++|+| ++.+|++++.++ |++||+.+++.+..+ ..|...+.+++|+|++  +|++++.||.
T Consensus       251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-cCCCCceEEEEECCCCCCEEEEEecCCc
Confidence             6677777 8999999999999 899999999887 999999999888775 5677889999999987  8999999999


Q ss_pred             EEEEeCCCCccccccee------------eec---------------cCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457          408 LWFWDWKSGHNFQQAQT------------IVQ---------------PGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM  460 (485)
Q Consensus       408 I~iwd~~~~~~~~~~~~------------~~~---------------~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i  460 (485)
                      |++||+.++........            ...               +....+...+.+++|+|+|++|++++.||.|+|
T Consensus       330 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~  409 (416)
T 2pm9_A          330 IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI  409 (416)
T ss_dssp             EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC
T ss_pred             EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE
Confidence            99999988765433211            000               001114567789999999999999999999999


Q ss_pred             ecCCCC
Q 011457          461 WREDET  466 (485)
Q Consensus       461 W~~~~~  466 (485)
                      |++.++
T Consensus       410 w~~~~~  415 (416)
T 2pm9_A          410 TNPKIS  415 (416)
T ss_dssp             BCCCCC
T ss_pred             EEeccC
Confidence            999764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-41  Score=336.49  Aligned_cols=289  Identities=21%  Similarity=0.370  Sum_probs=259.2

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|...|.++.++|++.++++++.|..+++|+..    ..+....+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~----~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL----TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT----TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            35799999999999999999999999999999763    35678889999999999999999999999999999999998


Q ss_pred             CCCc-------eEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEe-----cccCCceEEEEEec-C
Q 011457          205 AKGT-------LKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSY-----HGHLSGVYCLGLHP-T  270 (485)
Q Consensus       205 ~~~~-------~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~-----~~h~~~v~~l~~~~-~  270 (485)
                      .+..       ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ +
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence            7532       345678999999999999974 57999999999999999999998877     67999999999987 7


Q ss_pred             CCEEEEEECCCcEEEEECC-CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC------
Q 011457          271 IDILLTGGRDSVCRVWDIR-TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK------  343 (485)
Q Consensus       271 ~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------  343 (485)
                      +++|++|+.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++|+.||+|++||+++++.+..+..+.      
T Consensus       218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~  297 (380)
T 3iz6_a          218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE  297 (380)
T ss_dssp             CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred             CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence            8999999999999999998 557788899999999999999999999999999999999999999988776543      


Q ss_pred             -CceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeec---cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457          344 -KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML---SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       344 -~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                       ..|.+++|+|++.++++++.++ |++||...++.+..+.   ..|...|.+++|+|++ +|++|+.||.|++|++...+
T Consensus       298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence             2489999999999999998887 9999999988776652   5688899999999999 99999999999999987653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-40  Score=321.10  Aligned_cols=285  Identities=25%  Similarity=0.344  Sum_probs=235.4

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE-ec-CCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI-SG-HLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l-~~-H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      .+|...|.+..++++  ++++++.|+.+++|....  ..++....+ .+ |.+.|++++|+|++++|++|+.|++|+|||
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~--~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~   86 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKY--DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA   86 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSS--SCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecC--CCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            368889999998877  899999999999997653  234566666 45 999999999999999999999999999999


Q ss_pred             CCC-------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeeEEEecccCCceEEEEEecCCC
Q 011457          204 VAK-------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ----NKVIRSYHGHLSGVYCLGLHPTID  272 (485)
Q Consensus       204 ~~~-------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~  272 (485)
                      +..       .+....+.+|...|.+++|+|++++|++|+.|++|++||+..    .+++..+.+|...|.+++|+|+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  166 (330)
T 2hes_X           87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA  166 (330)
T ss_dssp             C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred             cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence            843       356778899999999999999999999999999999999943    256788899999999999999999


Q ss_pred             EEEEEECCCcEEEEECCCC--ceEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCC--------eEEeEec
Q 011457          273 ILLTGGRDSVCRVWDIRTK--MQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYG--------KTMLTLT  340 (485)
Q Consensus       273 ~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~--------~~~~~~~  340 (485)
                      +|++|+.|++|++||+.++  +++..+.+|...|.++.|+|+  +.+|++++.|++|++||++.+        .....+.
T Consensus       167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  246 (330)
T 2hes_X          167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP  246 (330)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred             EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence            9999999999999999876  678889999999999999998  678999999999999998754        3444555


Q ss_pred             c-CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc--eeeeeccCCcc-cEEEEEeCC--CC-eEEEEeCCCcEEEEe
Q 011457          341 H-HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE--FLHNMLSQQKT-IINSMAVNE--EG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       341 ~-~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~--~~~~~~~~~~~-~i~~~~~~~--~~-~l~sg~~dg~I~iwd  412 (485)
                      . |...|.+++|++++ +|++++.++ |++|+..+++  ........|.. .|.+++|+|  ++ +|++|+.||.|++||
T Consensus       247 ~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~  325 (330)
T 2hes_X          247 DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS  325 (330)
T ss_dssp             SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred             cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence            4 88899999999776 566666665 9999998774  33333345655 899999998  55 899999999999999


Q ss_pred             CCC
Q 011457          413 WKS  415 (485)
Q Consensus       413 ~~~  415 (485)
                      ++.
T Consensus       326 ~~~  328 (330)
T 2hes_X          326 LEK  328 (330)
T ss_dssp             C--
T ss_pred             ecc
Confidence            864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-41  Score=336.78  Aligned_cols=315  Identities=15%  Similarity=0.216  Sum_probs=258.0

Q ss_pred             ccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE-ecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCC---Cc--
Q 011457          136 SASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI-SGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAK---GT--  208 (485)
Q Consensus       136 ~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l-~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~---~~--  208 (485)
                      .+++++..+++..      .|     ....+++..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+   +.  
T Consensus        34 ~f~~~~~~~~~~~------~w-----~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  102 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MG-----NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY  102 (437)
T ss_dssp             GGCCCCCCCCCCC------GG-----GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC
T ss_pred             hcCCccccccccc------cc-----cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc
Confidence            3556666555543      24     3446788888 89999999999999 999999999999999999876   33  


Q ss_pred             -eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeeEEEecc------------cCCceEEEE--EecC
Q 011457          209 -LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE---QNKVIRSYHG------------HLSGVYCLG--LHPT  270 (485)
Q Consensus       209 -~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~---~~~~~~~~~~------------h~~~v~~l~--~~~~  270 (485)
                       ....+ .|...|.+++|+|++.+|++++.||.|++||++   +++.+..+.+            +...+.++.  ++++
T Consensus       103 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          103 SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence             23344 499999999999999999999999999999995   5555443332            455667776  5578


Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEecc--CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec-cCCCceE
Q 011457          271 IDILLTGGRDSVCRVWDIRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT-HHKKSVR  347 (485)
Q Consensus       271 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~  347 (485)
                      +++|++|+.||.|++||+++++.+..+.+  |...|++++|+|++.+|++|+.||.|++||+++++.+..+. .+...|.
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  261 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT  261 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence            99999999999999999999999999988  88999999999999999999999999999999999999886 6778999


Q ss_pred             EEEEC----CCCCEEEEEcCCC-EEEEECCCCceeeeeccC-------------------------CcccEEEEEeCCCC
Q 011457          348 AMALH----PTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ-------------------------QKTIINSMAVNEEG  397 (485)
Q Consensus       348 ~l~~~----p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~  397 (485)
                      +++|+    +++.+|++++.++ |++||+.+++.+..+..+                         +...|.+++++++.
T Consensus       262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~  341 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDK  341 (437)
T ss_dssp             EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTE
T ss_pred             EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCce
Confidence            99665    4677999999888 999999999877766422                         55678999999444


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeee-----------------------------ccCCCCCCccEEEEEEccC--C
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIV-----------------------------QPGSLDSEAGIYALSYDVT--G  446 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~V~~l~~s~~--g  446 (485)
                      +|++|+.||.|++||+.+++....+....                             ......|...|++++|+++  +
T Consensus       342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~  421 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET  421 (437)
T ss_dssp             EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS
T ss_pred             EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc
Confidence            99999999999999999988765544210                             0001137889999999998  8


Q ss_pred             CEEEEEECCCcEEEec
Q 011457          447 SRLVTCEADKTIKMWR  462 (485)
Q Consensus       447 ~~L~s~~~Dg~I~iW~  462 (485)
                      .+|++|+.||.|+||+
T Consensus       422 ~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          422 PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEETTSCEEEEC
T ss_pred             eEEEEEcCCceEEEeC
Confidence            8999999999999995

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-40  Score=326.04  Aligned_cols=290  Identities=21%  Similarity=0.290  Sum_probs=248.1

Q ss_pred             EEecCCcceEEEEEccC----CCEEEEEeCCCeEEEEECCCCceEEEEcc-----cccCEEEEEEcCC----CCEEEEEe
Q 011457          170 VISGHLGWVRSVAFDHS----NTWFCTGSADRTIKIWDVAKGTLKLTLTG-----HIEQVRGLAVSSK----HTYMFSAG  236 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~----~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~s~~----~~~l~s~~  236 (485)
                      ...+|.+.|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            44499999999999984    45666666778999999998887777664     4577999999998    67999999


Q ss_pred             CCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEe---ccCCccEEEEEEcCC
Q 011457          237 DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFAL---AGHDNTVCSVFTRPT  312 (485)
Q Consensus       237 ~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~  312 (485)
                      .||.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++.+..+   .+|...|.+++|+|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            999999999999999999999999999999999 8999999999999999999999998888   689999999999999


Q ss_pred             CCEEEEEeCCCCEEEEECCCCeEEeEec----------------------------cCCCceEEEEECCCCCEEEEEcCC
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGKTMLTLT----------------------------HHKKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~----------------------------~~~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      +.+|++++.||.|++||+++++....+.                            .|...|.+++|+  +.++++++.+
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            9999999999999999999876544333                            388899999998  7789998888


Q ss_pred             C-EEEEECCCCce--------------eeeeccCCcccEEEEEeCCC--C-eEEEEeCCCcEEEEeCCCCcccccceeee
Q 011457          365 N-IKKFNLPKGEF--------------LHNMLSQQKTIINSMAVNEE--G-VLATGGDNGSLWFWDWKSGHNFQQAQTIV  426 (485)
Q Consensus       365 ~-i~i~d~~~~~~--------------~~~~~~~~~~~i~~~~~~~~--~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~  426 (485)
                      + |++||+.++..              +.. ...+...+.++.|+++  + +|++|+.||.|++||+.+++.........
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  329 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGR-FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL  329 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEE-EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred             CEEEEEeCCCccccccccccCCcchheecc-ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence            7 99999987654              333 3556677889999998  7 99999999999999999987654222211


Q ss_pred             ccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          427 QPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       427 ~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .  ...+...|++++|+|++++|++++.||.|++|++.
T Consensus       330 ~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          330 T--HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             C--CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             c--ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            1  11236889999999999999999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-39  Score=320.46  Aligned_cols=297  Identities=13%  Similarity=0.150  Sum_probs=253.5

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      .+..|.+.|++++|+|++++|++|+.|+.|++||+.+++  ....+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            345799999999999999999999999999999999987  888899999999999999999999999999999999999


Q ss_pred             CCeeEEEe--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce---E-EEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          248 QNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---I-FALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       248 ~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~-~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      +++....+  ..|...|.+++|+|++++|++++.||.|++||++.+..   . .....|...|.++.|+|++.+|++++.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            88755443  67899999999999999999999999999999998773   2 333578999999999999999999999


Q ss_pred             CCCEEEEEC------------------CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc
Q 011457          322 DSTIKFWDL------------------RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS  382 (485)
Q Consensus       322 dg~I~iwd~------------------~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~  382 (485)
                      ||.|++||+                  ..++.+..+..|...|.+++|+|++.+|++++.++ |++||+.+++.+..+ .
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~  241 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-A  241 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-E
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE-c
Confidence            999999995                  46788888989999999999999999999999888 999999999988776 4


Q ss_pred             CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCC--Ccc--cccce----------------------eee-------ccC
Q 011457          383 QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS--GHN--FQQAQ----------------------TIV-------QPG  429 (485)
Q Consensus       383 ~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~--~~~--~~~~~----------------------~~~-------~~~  429 (485)
                      .+...+.+++|++++.+++++.||.|++|++.+  +..  ...+.                      ...       ...
T Consensus       242 ~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          242 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            667789999999999444444999999999987  421  00000                      000       111


Q ss_pred             CCCCCccEEEEEEc-cCC---CEEEEEECCCcEEEecCCCCC
Q 011457          430 SLDSEAGIYALSYD-VTG---SRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       430 ~~~~~~~V~~l~~s-~~g---~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ..+|...|++++|. ++|   .+|++|+.||.|++|++.+..
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            12688899999966 666   999999999999999986543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.9e-39  Score=310.56  Aligned_cols=285  Identities=23%  Similarity=0.401  Sum_probs=258.6

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|...|.++.+++++.++++++.|+.+.+|....    .+....+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            457899999999999999999999999999997643    4677889999999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      .+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|+
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  174 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCce---EEEEECCCCCEEEE
Q 011457          285 VWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSV---RAMALHPTEDCFAS  360 (485)
Q Consensus       285 iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v---~~l~~~p~~~~l~~  360 (485)
                      +||+++++.+..+. .+...+..++|+|++++|++++.||.|++||+++++.+..+..|...+   ......+++.++++
T Consensus       175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  254 (312)
T 4ery_A          175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS  254 (312)
T ss_dssp             EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred             EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence            99999998887764 456789999999999999999999999999999999999998876543   33334577889999


Q ss_pred             EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe--CCCcEEEEeCC
Q 011457          361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG--DNGSLWFWDWK  414 (485)
Q Consensus       361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~--~dg~I~iwd~~  414 (485)
                      ++.++ |++||+.+++.+..+ ..|...|.+++++|++ ++++++  .||.|++|+..
T Consensus       255 g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          255 GSEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ECCCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99887 999999999988775 5678889999999999 888876  69999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.9e-39  Score=327.79  Aligned_cols=323  Identities=25%  Similarity=0.455  Sum_probs=286.0

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .+|.+.+.. .++++++++++++.|+.+.+|+...    .+....+.+|.+.|.+++|+  +++|++|+.||.|++||+.
T Consensus       115 ~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          115 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT----GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT----CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             cccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCC----CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            356665544 2556788999999999999998743    57888999999999999997  6799999999999999999


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      +++....+.+|...|.++.|+  +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|  +++++++|+.||.|++
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred             cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence            999999999999999999995  567999999999999999999999999999999999999  6789999999999999


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      ||+++++.+..+.+|...|.++.+  ++.++++++.||.|++||+++++.+..+..|...+.++.++  +.++++++.++
T Consensus       264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg  339 (445)
T 2ovr_B          264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS  339 (445)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred             EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCC
Confidence            999999999999999999999999  78899999999999999999999999999999999988874  66888888776


Q ss_pred             -EEEEECCCCceeeeecc--CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE
Q 011457          366 -IKKFNLPKGEFLHNMLS--QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY  442 (485)
Q Consensus       366 -i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  442 (485)
                       |++||+.+++.+..+..  .+...|.++.+++ .+|++|+.||.|++||+.+++.+..+...   ....+...|++++|
T Consensus       340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~  415 (445)
T 2ovr_B          340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTL---ESGGSGGVVWRIRA  415 (445)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEEC---TTGGGTCEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeecc---ccCCCCceEEEEEe
Confidence             99999999998887643  3678899999974 49999999999999999999877665322   11246778999999


Q ss_pred             ccCCCEEEEEECCCc----EEEecCCCCC
Q 011457          443 DVTGSRLVTCEADKT----IKMWREDETA  467 (485)
Q Consensus       443 s~~g~~L~s~~~Dg~----I~iW~~~~~~  467 (485)
                      +|++.+|++|+.||+    |.|||++...
T Consensus       416 s~~~~~la~~~~dg~~~~~l~v~df~~~~  444 (445)
T 2ovr_B          416 SNTKLVCAVGSRNGTEETKLLVLDFDVDM  444 (445)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred             cCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence            999999999999998    9999998653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-39  Score=324.02  Aligned_cols=282  Identities=24%  Similarity=0.419  Sum_probs=248.3

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCC------------------cceEEEEEccCCC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHL------------------GWVRSVAFDHSNT  188 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~------------------~~V~~l~~sp~~~  188 (485)
                      +|...|.++.++|++.+++++. +..+.+|....    .+.+..+.+|.                  ..|++++|+|+++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~----g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD----GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTT----CCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecC----CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            4888899999999999999865 67788886543    34455555543                  3499999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457          189 WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH  268 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  268 (485)
                      +|++|+.|+.|+|||+.+++....+.+|...|.+++|+|++.+|++++.|++|++||++++++...+. +...+.+++|+
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~  215 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS  215 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999888876 66789999999


Q ss_pred             c-CCCEEEEEECCCcEEEEECCCCceEEEe-------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC-------
Q 011457          269 P-TIDILLTGGRDSVCRVWDIRTKMQIFAL-------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG-------  333 (485)
Q Consensus       269 ~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~-------  333 (485)
                      | ++++|++|+.||.|++||+++++.+..+       .+|...|.+++|+|++.+|++|+.||.|++||++..       
T Consensus       216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  295 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  295 (393)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence            9 8999999999999999999999888776       578999999999999999999999999999999753       


Q ss_pred             -----eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC------CC-eEE
Q 011457          334 -----KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE------EG-VLA  400 (485)
Q Consensus       334 -----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~------~~-~l~  400 (485)
                           .+...+.+|...|.+++|+|++.+|++++.++ |++||..+++.+..+ .+|...|.++++++      ++ +|+
T Consensus       296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~  374 (393)
T 1erj_A          296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFA  374 (393)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-CCCCCCEEEEEecCCcCcCCCCCEEE
Confidence                 34557778999999999999999999999988 999999999988765 57888899999886      45 899


Q ss_pred             EEeCCCcEEEEeCCC
Q 011457          401 TGGDNGSLWFWDWKS  415 (485)
Q Consensus       401 sg~~dg~I~iwd~~~  415 (485)
                      +|+.||.|++|++..
T Consensus       375 sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          375 TGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEETTSEEEEEEEEE
T ss_pred             EECCCCcEEECcccc
Confidence            999999999999754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.2e-40  Score=372.49  Aligned_cols=332  Identities=20%  Similarity=0.318  Sum_probs=295.0

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|...|.+..+++++.++++++.|+.+.+|....    .+.+..+.+|.+.|++++|+|++++|++|+.||.|+|||+
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            457999999999999999999999999999997744    5678889999999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      .+++.+..+.+|...|.+++|+|  ++.++++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.
T Consensus       687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence            99999999999999999999999  5568999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceEEEe-------------------------------------------------------ccCCccEEEE
Q 011457          283 CRVWDIRTKMQIFAL-------------------------------------------------------AGHDNTVCSV  307 (485)
Q Consensus       283 i~iwd~~~~~~~~~~-------------------------------------------------------~~~~~~v~~l  307 (485)
                      |++||+++++....+                                                       .+|...|.++
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            999999876543322                                                       1577889999


Q ss_pred             EEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee---------
Q 011457          308 FTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL---------  377 (485)
Q Consensus       308 ~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~---------  377 (485)
                      +|+|++.++++++.||.|++||+.++..+..+.+|...|.+++|+|++.+|++++.++ +++|++.+....         
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~  926 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI  926 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence            9999999999999999999999999999999999999999999999999999999887 999997532110         


Q ss_pred             --------------------e-------eeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccC
Q 011457          378 --------------------H-------NMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG  429 (485)
Q Consensus       378 --------------------~-------~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~  429 (485)
                                          .       .........+.+++++|++ ++++|+.+|.|++||+.++.....+.      
T Consensus       927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~------ 1000 (1249)
T 3sfz_A          927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV------ 1000 (1249)
T ss_dssp             EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC------
T ss_pred             eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc------
Confidence                                0       0011123568999999999 99999999999999999887655443      


Q ss_pred             CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                        .|...|++++|+|+|++|++++.||.|++|++.++..
T Consensus      1001 --~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A         1001 --GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp             --CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred             --cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence              5778899999999999999999999999999987653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.9e-40  Score=318.67  Aligned_cols=303  Identities=17%  Similarity=0.261  Sum_probs=249.4

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEE-EEEeC---CCeEEEEECCCCceEEEE-cccccCEEEEEEcCC---CCEEEEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSA---DRTIKIWDVAKGTLKLTL-TGHIEQVRGLAVSSK---HTYMFSA  235 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~---dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~s~~---~~~l~s~  235 (485)
                      |......+.+|.+.|++++|+|++..+ ++|+.   |+.|+|||+.+++..... .+|...|.+++|+|+   +.+|+++
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            445566778999999999999998655 56665   899999999998876443 369999999999998   6999999


Q ss_pred             eCCCcEEEEECCCCe-eEEEecccCCceEEEEE------ecCCCEEEEEECCCcEEEEECCCCc-eEEEeccCCc----c
Q 011457          236 GDDKQVKCWDLEQNK-VIRSYHGHLSGVYCLGL------HPTIDILLTGGRDSVCRVWDIRTKM-QIFALAGHDN----T  303 (485)
Q Consensus       236 ~~dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~----~  303 (485)
                      +.||.|++||+.+++ .+..+.+|...|.++.|      +|++++|++++.||.|++||+++++ .+..+..|..    .
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence            999999999999988 88999999999999965      6789999999999999999999887 6777766554    8


Q ss_pred             EEEEE----EcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC---CCCEEEEEcCCC-EEEEECCCCc
Q 011457          304 VCSVF----TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP---TEDCFASASAEN-IKKFNLPKGE  375 (485)
Q Consensus       304 v~~l~----~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p---~~~~l~~~~~~~-i~i~d~~~~~  375 (485)
                      +.++.    |++++.+|++++.||.|++||+++++.... ..+...|.+++|+|   ++.++++++.++ |++||+.+++
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            88888    688999999999999999999999887544 55788999999999   899999999887 9999998776


Q ss_pred             eeeeec----cCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCccccccee-----------eeccCCCCCCccEE
Q 011457          376 FLHNML----SQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQT-----------IVQPGSLDSEAGIY  438 (485)
Q Consensus       376 ~~~~~~----~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~V~  438 (485)
                      ....+.    ..+...|.++.|+|++  +|++|+.||.|++||+.++........           ........|...|+
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence            554432    3688899999999988  699999999999999987654321100           00001124778899


Q ss_pred             EEEEccCCCEEE-EEECCCcEEEecCCCCC
Q 011457          439 ALSYDVTGSRLV-TCEADKTIKMWREDETA  467 (485)
Q Consensus       439 ~l~~s~~g~~L~-s~~~Dg~I~iW~~~~~~  467 (485)
                      +++|+|+|++|+ +++.||.|+||++....
T Consensus       326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             EEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            999999999998 89999999999997643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.4e-39  Score=338.41  Aligned_cols=325  Identities=18%  Similarity=0.247  Sum_probs=278.8

Q ss_pred             CCCCCcceeecccCCCCc-ccccccccCCCCCCCCCCCCCCcceEEEEecCCc---ceEEEEEccC-CCEEEEEeCCCeE
Q 011457          125 ASGKSSAIVSTSASSERN-LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLG---WVRSVAFDHS-NTWFCTGSADRTI  199 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~-~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~-~~~l~tgs~dg~I  199 (485)
                      ..+|...|.++.+++++. ++++++.+..+.+|...    ..+....+.+|.+   .|++++|+|+ +++|++++.||.|
T Consensus       156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  231 (615)
T 1pgu_A          156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP----PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI  231 (615)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT----TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred             eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC----CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence            346788899999999998 79999999999999753    4678889999999   9999999999 9999999999999


Q ss_pred             EEEECCCCceEEEE-c---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc----CCceEEEEEecCC
Q 011457          200 KIWDVAKGTLKLTL-T---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH----LSGVYCLGLHPTI  271 (485)
Q Consensus       200 ~iwd~~~~~~~~~~-~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~  271 (485)
                      ++||+.+++.+..+ .   .|...|.+++|+ ++.+|++++.||.|++||+++++.+..+..+    ...+.++.|. ++
T Consensus       232 ~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  309 (615)
T 1pgu_A          232 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN  309 (615)
T ss_dssp             EEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET
T ss_pred             EEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC
Confidence            99999999999998 6   899999999999 9999999999999999999999999988766    4678888886 88


Q ss_pred             CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCC---------------------------------------
Q 011457          272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT---------------------------------------  312 (485)
Q Consensus       272 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------------------------------------  312 (485)
                      +++++++.||.|++||+.+++.+..+.+|...|.+++| |+                                       
T Consensus       310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~  388 (615)
T 1pgu_A          310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSS  388 (615)
T ss_dssp             TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEE
T ss_pred             CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEE
Confidence            99999999999999999988877777766666555554 32                                       


Q ss_pred             -------------------------------------------------------------------CCEEEEEeC-CCC
Q 011457          313 -------------------------------------------------------------------DPQVVTGSH-DST  324 (485)
Q Consensus       313 -------------------------------------------------------------------~~~l~s~s~-dg~  324 (485)
                                                                                         +++|++++. ||.
T Consensus       389 ~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~  468 (615)
T 1pgu_A          389 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNT  468 (615)
T ss_dssp             EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSC
T ss_pred             EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCe
Confidence                                                                               334555555 666


Q ss_pred             EEEEECCCCeEE-eEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCC-------
Q 011457          325 IKFWDLRYGKTM-LTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE-------  395 (485)
Q Consensus       325 I~iwd~~~~~~~-~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-------  395 (485)
                      |++||+..++.. ..+..|...|.+++|+|++.+|++++.++ |++|++.+++.+..+...|...|.+++|+|       
T Consensus       469 i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  548 (615)
T 1pgu_A          469 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE  548 (615)
T ss_dssp             EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred             EEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccc
Confidence            666666655444 55667888999999999999999998887 999999999998886554889999999999       


Q ss_pred             ---CC-eEEEEeCCCcEEEEeCCCC-cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          396 ---EG-VLATGGDNGSLWFWDWKSG-HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       396 ---~~-~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                         ++ +|++|+.||.|++||+.++ +.+..+        ..|...|++++|+|+++ |++++.||.|++|+++.
T Consensus       549 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          549 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--------NAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSCTTCCEEET--------TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             cccCCCEEEEEcCCCcEEEEECCCCceechhh--------hcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence               88 9999999999999999987 444333        25788999999999999 99999999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-40  Score=332.53  Aligned_cols=296  Identities=16%  Similarity=0.243  Sum_probs=236.1

Q ss_pred             CcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceE--EEEcccccCEEEEEEcC-CCCEEEEEeCCC
Q 011457          164 PWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLK--LTLTGHIEQVRGLAVSS-KHTYMFSAGDDK  239 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg  239 (485)
                      .++..+...+|...|+||+|+| ++++||+|+.||.|+|||+.+++..  ..+.+|.+.|++|+|+| ++.+|++|+.||
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            4566677889999999999999 5679999999999999999877544  44568999999999998 688999999999


Q ss_pred             cEEEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC-EE
Q 011457          240 QVKCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP-QV  316 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l  316 (485)
                      +|++||++++.......  .+...+.+++|+|++++|++|+.||.|++||++. +.+..+.+|...|.+++|+|+++ +|
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEE
Confidence            99999998765443333  3445678999999999999999999999999974 56778889999999999999876 78


Q ss_pred             EEEeCCCCEEEEECCCCeEEeE---eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc-----cc
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLT---LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK-----TI  387 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~---~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~-----~~  387 (485)
                      ++++.|+.|++||+++.+....   ...|...|.+++|+|++.+|++++.|+ |++||+.++.....+..+..     ..
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  346 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT  346 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred             EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence            8999999999999998765443   356888999999999999999999887 99999999887766533221     11


Q ss_pred             EEEEEeCCCC-eEEEEe------------CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEE-EEccCCCEEEEEE
Q 011457          388 INSMAVNEEG-VLATGG------------DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYAL-SYDVTGSRLVTCE  453 (485)
Q Consensus       388 i~~~~~~~~~-~l~sg~------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~~s~~g~~L~s~~  453 (485)
                      +....+++++ +++++.            .++.|++||..+++.+..+..       .|...|.++ +|+|+|++|++|+
T Consensus       347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-------~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-------PESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-------SSCCCCCCEEEECTTSSCEEEEC
T ss_pred             eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-------CCCCcEEEEEEECCCCCEEEEEc
Confidence            2233455555 444443            346799999999987665432       356677777 6999999999875


Q ss_pred             CCCcEEEecCCCCCC
Q 011457          454 ADKTIKMWREDETAT  468 (485)
Q Consensus       454 ~Dg~I~iW~~~~~~~  468 (485)
                       |+.|+||++.++..
T Consensus       420 -d~~i~iW~~~~gk~  433 (435)
T 4e54_B          420 -GYHILIWSQQEART  433 (435)
T ss_dssp             -SSEEEECCCC----
T ss_pred             -CCcEEEEECCcCee
Confidence             88999999987654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-40  Score=328.10  Aligned_cols=291  Identities=13%  Similarity=0.121  Sum_probs=233.6

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC--ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      .+..|.++|++++|+|++++|++|+.|+.|+|||+.++  +....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            44567889999999999999999999999999999988  7788899999999999999999999999999999999999


Q ss_pred             CCe---eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc---eEEEecc-CCccEEEEEEcCCCCEEEEEe
Q 011457          248 QNK---VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM---QIFALAG-HDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       248 ~~~---~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      +++   ....+.+|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++++|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            877   677788899999999999999999999999999999999887   4677777 999999999999999999999


Q ss_pred             CCCCEEEEECC------------------CCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce----e
Q 011457          321 HDSTIKFWDLR------------------YGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF----L  377 (485)
Q Consensus       321 ~dg~I~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~----~  377 (485)
                      .||.|++||++                  .++.+..+ .|...|.+++|+|++.+|++++.++ |++||+.+++.    +
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  244 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL  244 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence            99999999985                  34566666 8899999999999999999999887 99999999887    4


Q ss_pred             eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc-c-cccce-------------------------------
Q 011457          378 HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH-N-FQQAQ-------------------------------  423 (485)
Q Consensus       378 ~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~-~-~~~~~-------------------------------  423 (485)
                      .. ...+...+.+++|++++ +|++|+.+ .+.+|+...+. . ...+.                               
T Consensus       245 ~~-~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (377)
T 3dwl_C          245 IT-VKLSQLPLRSLLWANESAIVAAGYNY-SPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS  322 (377)
T ss_dssp             CC-EECSSSCEEEEEEEETTEEEEEESSS-SEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred             Ee-ecCCCCceEEEEEcCCCCEEEEEcCC-cEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence            44 45678889999999999 66666555 55577665221 0 00000                               


Q ss_pred             ---e--------eeccCCCCCCccEEEEEEccCC-C---EEEEEECCCcEEEecC
Q 011457          424 ---T--------IVQPGSLDSEAGIYALSYDVTG-S---RLVTCEADKTIKMWRE  463 (485)
Q Consensus       424 ---~--------~~~~~~~~~~~~V~~l~~s~~g-~---~L~s~~~Dg~I~iW~~  463 (485)
                         .        ........|...|+++.+.+.+ .   .|+|||.||.|+||++
T Consensus       323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence               0        0000112388899999975543 3   6999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.3e-40  Score=328.10  Aligned_cols=284  Identities=17%  Similarity=0.224  Sum_probs=248.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      ..+++++|+|++++|++|+.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|++||+.+++....+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence            34568999999999999999999999999888776666655 44555678999999999999999999999999999988


Q ss_pred             cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                      .+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++.||.|++||+++++.
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEeccC---C---------------------CceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEE
Q 011457          336 MLTLTHH---K---------------------KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINS  390 (485)
Q Consensus       336 ~~~~~~~---~---------------------~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~  390 (485)
                      +..+..+   .                     ..+.+++|+|++.+|++++.++ |++||+.+++.+..+...+...+.+
T Consensus       216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS  295 (420)
T ss_dssp             EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred             eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence            8888753   2                     3344455688999999999887 9999999999988887788899999


Q ss_pred             EEeCCCC--eEEEEeCCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          391 MAVNEEG--VLATGGDNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       391 ~~~~~~~--~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ++|+|++  +|++|+.||.|++||+++++. +..+..       .+...|.++.| +++++|++++.||.|++|++....
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-------NEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-------STTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-------cCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence            9999998  799999999999999998754 333321       25667888865 578899999999999999998754


Q ss_pred             C
Q 011457          468 T  468 (485)
Q Consensus       468 ~  468 (485)
                      .
T Consensus       368 ~  368 (420)
T 3vl1_A          368 S  368 (420)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-38  Score=322.67  Aligned_cols=315  Identities=21%  Similarity=0.414  Sum_probs=270.0

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~  206 (485)
                      +|...+.. ....+++++++++.|+.+.+|+...    .+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+
T Consensus       119 ~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          119 GHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN----KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             CCSSSCEE-EEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred             CCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCC----CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence            46555433 2334667899999999999997643    57889999999999999999988 899999999999999999


Q ss_pred             CceEEEEcccccCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCe-----------------------eEEEecccCCc
Q 011457          207 GTLKLTLTGHIEQVRGLAVS--SKHTYMFSAGDDKQVKCWDLEQNK-----------------------VIRSYHGHLSG  261 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s--~~~~~l~s~~~dg~V~iwd~~~~~-----------------------~~~~~~~h~~~  261 (485)
                      ++....+.+|...|.+++|+  +++.+|++++.||.|++||+.++.                       .+..+.+|...
T Consensus       193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (464)
T 3v7d_B          193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  272 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred             CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence            99999999999999999998  578999999999999999998765                       25567789898


Q ss_pred             eEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc
Q 011457          262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH  341 (485)
Q Consensus       262 v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~  341 (485)
                      |.++  ++++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+..
T Consensus       273 v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  350 (464)
T 3v7d_B          273 VRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  350 (464)
T ss_dssp             EEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence            8887  56788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457          342 HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       342 ~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      |...|.++.|+  +.++++++.++ |++||+.++......  .+...+..+++++++ ++++|+ ||.|++||+.+++.+
T Consensus       351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred             CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence            99999999997  57888888887 999999998766554  455667778888888 777777 899999999999876


Q ss_pred             ccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       420 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      ....       ..+...|.+++|+ .+.++++++.||.+.+|-
T Consensus       426 ~~~~-------~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          426 HANI-------LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             ESCT-------TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             ehhh-------ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            5432       2467889999998 344555566777666554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7e-39  Score=319.26  Aligned_cols=290  Identities=21%  Similarity=0.355  Sum_probs=247.7

Q ss_pred             EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~  249 (485)
                      ..+|.+.+.+.++++++..+++++.|+.|++||+.+++....+.. |...|.+++|+|++.+|++|+.||.|++||+.++
T Consensus        87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            347776644433333346688899999999999999998887766 7899999999999999999999999999999999


Q ss_pred             eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC-CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457          250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW  328 (485)
Q Consensus       250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iw  328 (485)
                      +.+..+.+|...|.+++|+  +++|++|+.||.|++||++ ....+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus       167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence            9999999999999999994  5799999999999999999 566788888999999999999999999999999999999


Q ss_pred             ECCCCeEEeEeccCCCceEEEEECCCCC-EEEEEc--CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEE--
Q 011457          329 DLRYGKTMLTLTHHKKSVRAMALHPTED-CFASAS--AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLAT--  401 (485)
Q Consensus       329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~--~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~s--  401 (485)
                      |+++++.+..+..|...|.+++|+|++. ++++++  .++ |++||+.+++.+..+.  +...+.++.|++++ ++++  
T Consensus       245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred             cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEe
Confidence            9999999999999999999999999764 566654  355 9999999999888763  55679999999999 7777  


Q ss_pred             EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       402 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      |+.||.|++||+.++........      ..|...|.+++|+|+|++|++++.||.|++|++.++....
T Consensus       323 g~~dg~i~v~~~~~~~~~~~~~~------~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSGLTKQVDI------PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             CTTTCEEEEEEEETTEEEEEEEE------ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred             ecCCCcEEEEecCCccceeEEEe------cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence            44899999999988655443321      2477889999999999999999999999999998876543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-39  Score=318.89  Aligned_cols=285  Identities=12%  Similarity=0.181  Sum_probs=252.7

Q ss_pred             ecCCcceEEEEEccCCC-EEEEEeCCCeEEEEEC----CCCc------eEEEEcc----------cccCEEEEEEcCCCC
Q 011457          172 SGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDV----AKGT------LKLTLTG----------HIEQVRGLAVSSKHT  230 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~----~~~~------~~~~~~~----------h~~~V~~l~~s~~~~  230 (485)
                      ..|.+.|++++|+|+++ +|++|+.||.|++||+    .+++      ....+..          |...|.+++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            35679999999999999 9999999999999999    8888      4555554          678999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc-------
Q 011457          231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT-------  303 (485)
Q Consensus       231 ~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-------  303 (485)
                      +|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..+...       
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            999999999999999 678889999999999999999999999999999999999999999999988877776       


Q ss_pred             --------EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC
Q 011457          304 --------VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG  374 (485)
Q Consensus       304 --------v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~  374 (485)
                              +.++.|++++ .+++++.||.|++||+++++.+..+..|...|.+++|+|++.+|++++.++ |++||+.++
T Consensus       201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred             cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                    8999999875 688999999999999999999999999999999999999999999999777 999999998


Q ss_pred             ceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      +.+..+ ..+...+.++.|++++++++++.||.|++||+.+++....+.        .|...|.+++|+|++++|++++.
T Consensus       280 ~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          280 NSQNCF-YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI--------VDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             SCSEEE-CCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE--------CTTCCEEEEEECTTSSEEEEEET
T ss_pred             ccceEe-cCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc--------cCCccEEEEEEcCCCCEEEEEEC
Confidence            877775 567788999999999999999999999999999887665544        36778999999999999999999


Q ss_pred             CCcEEEecCCCCC
Q 011457          455 DKTIKMWREDETA  467 (485)
Q Consensus       455 Dg~I~iW~~~~~~  467 (485)
                      ||.|++|++....
T Consensus       351 dg~i~i~~~~~~~  363 (425)
T 1r5m_A          351 DGQVNVYDLKKLN  363 (425)
T ss_dssp             TSCEEEEECHHHH
T ss_pred             CCeEEEEECCCCc
Confidence            9999999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.3e-38  Score=318.10  Aligned_cols=288  Identities=22%  Similarity=0.400  Sum_probs=256.1

Q ss_pred             ceEEEEecCCcce-EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          166 KCYRVISGHLGWV-RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       166 ~~~~~l~~H~~~V-~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      .....+.+|.+.| .++.+  ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++++ +|++|+.||+|++|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            4566888999885 66666  57899999999999999999999999999999999999999988 89999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEe--cCCCEEEEEECCCcEEEEECCCCce-----------------------EEEecc
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLH--PTIDILLTGGRDSVCRVWDIRTKMQ-----------------------IFALAG  299 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~sg~~dg~i~iwd~~~~~~-----------------------~~~~~~  299 (485)
                      |+++++.+..+.+|...|.+++|+  +++++|++|+.||.|++||++++..                       +..+.+
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            999999999999999999999999  4778999999999999999987653                       456778


Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceee
Q 011457          300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLH  378 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~  378 (485)
                      |...+.++  +++++++++++.||.|++||+++++.+..+..|...|.+++|+|++.++++++.++ |++||+.+++.+.
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  346 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            88888887  56788999999999999999999999999999999999999999999999999887 9999999999888


Q ss_pred             eeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcE
Q 011457          379 NMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTI  458 (485)
Q Consensus       379 ~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I  458 (485)
                      .+ ..|...+.++.+++ .+|++|+.||.|++||+.++......         .+...+..++|++++++|++|+ ||.|
T Consensus       347 ~~-~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~-dg~i  414 (464)
T 3v7d_B          347 TL-QGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY---------HHTNLSAITTFYVSDNILVSGS-ENQF  414 (464)
T ss_dssp             EE-CCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEE---------ECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred             EE-eCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeee---------cCCCCccEEEEEeCCCEEEEec-CCeE
Confidence            76 56788899999984 49999999999999999987654332         2445677889999999999998 9999


Q ss_pred             EEecCCCCCCCC
Q 011457          459 KMWREDETATPE  470 (485)
Q Consensus       459 ~iW~~~~~~~~~  470 (485)
                      ++|++.++....
T Consensus       415 ~iwd~~~g~~~~  426 (464)
T 3v7d_B          415 NIYNLRSGKLVH  426 (464)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEECCCCcEEe
Confidence            999999887554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.4e-39  Score=336.29  Aligned_cols=321  Identities=15%  Similarity=0.188  Sum_probs=273.5

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcc-eEEEEEcc--CCCEEEEEeCCCeEEEEE
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGW-VRSVAFDH--SNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~-V~~l~~sp--~~~~l~tgs~dg~I~iwd  203 (485)
                      .|...|.++.+++++++++++. +..+.+|.......+.+....+.+|.+. |++++|+|  ++++|++|+.||.|+|||
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            4667788899999999988877 7788999876544445788999999999 99999999  999999999999999999


Q ss_pred             CCCC--------ceEEEEcccccCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457          204 VAKG--------TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD----KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       204 ~~~~--------~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~  271 (485)
                      +.++        +....+..|...|.+++|+|++++|++++.+    +.|++||  .++.+..+.+|...|.+++|+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~  172 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR  172 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence            9754        6777888899999999999999999999987    6888887  677889999999999999999999


Q ss_pred             C-EEEEEECCCcEEEEECCCCceEEEeccCCc---cEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEe-c---cC
Q 011457          272 D-ILLTGGRDSVCRVWDIRTKMQIFALAGHDN---TVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTL-T---HH  342 (485)
Q Consensus       272 ~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~-~---~~  342 (485)
                      + .+++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .   .|
T Consensus       173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  252 (615)
T 1pgu_A          173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV  252 (615)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred             CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence            8 899999999999999999999999999999   9999999999 999999999999999999999999998 6   88


Q ss_pred             CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC---CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcc
Q 011457          343 KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ---QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       343 ~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~  418 (485)
                      ...|.+++|+ ++.+|++++.++ +++||+.+++.+..+...   ....+.++.++.+.++++++.||.|++||+.+++.
T Consensus       253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  331 (615)
T 1pgu_A          253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV  331 (615)
T ss_dssp             CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred             CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence            9999999999 999999999887 999999999888776443   24667788887444999999999999999988665


Q ss_pred             cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      +..+.        .|...|++++| |+   |++++.||.|++|++
T Consensus       332 ~~~~~--------~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~  364 (615)
T 1pgu_A          332 LKTIS--------GHNKGITALTV-NP---LISGSYDGRIMEWSS  364 (615)
T ss_dssp             EEEEC--------CCSSCEEEEET-TT---TEEEETTSCEEETTT
T ss_pred             EEEEe--------CCCCCEEEEEe-cC---cEEECCCCeEEEEEc
Confidence            54443        24444555555 44   444444444444443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-38  Score=340.15  Aligned_cols=289  Identities=21%  Similarity=0.399  Sum_probs=256.2

Q ss_pred             CCCCCcceeecccCCCC-cccccccccCCCCCCCCCCCCCC-cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457          125 ASGKSSAIVSTSASSER-NLSTSAIMERIPSKWPRPEWHAP-WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW  202 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~-~~~~t~~~~~~~~~w~~~~~~~~-~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw  202 (485)
                      ..+|...|.++.+++++ .+++|++.|+.+++|........ ....+.+.+|.+.|++++|+|++++|++|+.||+|+||
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW  457 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            34799999999999864 68999999999999987654333 34567899999999999999999999999999999999


Q ss_pred             ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cccCCceEEEEEecCC--CEEEEE
Q 011457          203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY---HGHLSGVYCLGLHPTI--DILLTG  277 (485)
Q Consensus       203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~--~~l~sg  277 (485)
                      |+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.........   .+|...|.+++|+|++  ..|++|
T Consensus       458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  537 (694)
T 3dm0_A          458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA  537 (694)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence            99999999999999999999999999999999999999999998755443332   4688999999999986  589999


Q ss_pred             ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCE
Q 011457          278 GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDC  357 (485)
Q Consensus       278 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~  357 (485)
                      +.|++|++||+++++....+.+|...|.+++|+|++.+|++|+.||.|++||+++++.+..+.. ...|.+++|+|++.+
T Consensus       538 s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~  616 (694)
T 3dm0_A          538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYW  616 (694)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSE
T ss_pred             eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcE
Confidence            9999999999999999999999999999999999999999999999999999999998887764 467999999999999


Q ss_pred             EEEEcCCCEEEEECCCCceeeeeccCC------------------cccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          358 FASASAENIKKFNLPKGEFLHNMLSQQ------------------KTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       358 l~~~~~~~i~i~d~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      ++++++++|++||+.++..+..+....                  ...+.+++|+|++ +|++|+.||.|++||+.
T Consensus       617 l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          617 LCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            999998889999999998876653211                  1237889999999 99999999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.8e-38  Score=304.81  Aligned_cols=292  Identities=22%  Similarity=0.373  Sum_probs=259.9

Q ss_pred             CCCCCcceeecccCCC-CcccccccccCCCCCCCCCCCCC-CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457          125 ASGKSSAIVSTSASSE-RNLSTSAIMERIPSKWPRPEWHA-PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW  202 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~-~~~~~t~~~~~~~~~w~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw  202 (485)
                      ..||.+.|.+++++|+ +.+++|++.|+.+++|+...... ...+.+.+.+|.+.|.+++|+|++++|++|+.|+.|++|
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence            4589999999999997 57999999999999998655433 345678899999999999999999999999999999999


Q ss_pred             ECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEecccCCceEEEEEecCC--CEEEEEEC
Q 011457          203 DVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-IRSYHGHLSGVYCLGLHPTI--DILLTGGR  279 (485)
Q Consensus       203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~--~~l~sg~~  279 (485)
                      +............+...+..+.+++++.+|++++.|+.+++||+..... ...+.+|...+.+++|++++  .++++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~  193 (340)
T 4aow_A          114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW  193 (340)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred             eecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC
Confidence            9999999998988999999999999999999999999999999976654 34457899999999999874  47899999


Q ss_pred             CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       280 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      |+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++.+.+..+..+ ..|.++.|+|++.+++
T Consensus       194 d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLC  272 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEE
T ss_pred             CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceee
Confidence            999999999999999999999999999999999999999999999999999999998888754 5799999999999888


Q ss_pred             EEcCCCEEEEECCCCceeeeec--------cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457          360 SASAENIKKFNLPKGEFLHNML--------SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       360 ~~~~~~i~i~d~~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                      ++.++.|++||++.+..+..+.        ..+...|.+++|+|++ +|++|+.||.|+|||+++|.
T Consensus       273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            8877779999999887765542        3567789999999999 99999999999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.9e-38  Score=312.96  Aligned_cols=296  Identities=18%  Similarity=0.246  Sum_probs=249.4

Q ss_pred             ceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEc-------------ccccCEEEEEEcC-CCC
Q 011457          166 KCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLKLTLT-------------GHIEQVRGLAVSS-KHT  230 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------------~h~~~V~~l~~s~-~~~  230 (485)
                      +....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.             +|...|.+++|+| ++.
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            45677889999999999999 99999999999999999999876554442             5999999999999 778


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEE
Q 011457          231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSV  307 (485)
Q Consensus       231 ~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  307 (485)
                      +|++++.||.|++||+.+++.+..+. +...+.++.|++.   +.++++++.||.|++||+++++.+..+.+|...|.++
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence            99999999999999999999988887 7888999999995   4499999999999999999999999999999999999


Q ss_pred             EEcCCCC-EEEEEeCCCCEEEEECCCCe-EEeEe---------------ccCCCceEEEEECCCCCEEEEEcCCC-EEEE
Q 011457          308 FTRPTDP-QVVTGSHDSTIKFWDLRYGK-TMLTL---------------THHKKSVRAMALHPTEDCFASASAEN-IKKF  369 (485)
Q Consensus       308 ~~~~~~~-~l~s~s~dg~I~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~  369 (485)
                      +|+|+++ +|++++.||.|++||++.+. .+..+               ..|...|.+++|+|++.+|++++.++ +++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            9999998 58999999999999998765 33333               46788999999999999999998887 9999


Q ss_pred             ECCCCceeeeeccC-----CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457          370 NLPKGEFLHNMLSQ-----QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       370 d~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                      |+.+++........     ...............+++++.+|.|++||+.+++.+..+.        .|...|++++|+|
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~s~  344 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--------GHYKTVDCCVFQS  344 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--------CCSSCEEEEEEET
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--------cCCCeEEEEEEcC
Confidence            99988765443221     1122223333344478888899999999999988776654        4778899999999


Q ss_pred             CCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          445 TGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       445 ~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      ++++|++++.||.|++|++.......
T Consensus       345 ~~~~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          345 NFQELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             TTTEEEEEETTSCEEEEEECC-----
T ss_pred             CCCEEEEECCCCeEEEEeCCCCCccC
Confidence            99999999999999999998876544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=325.68  Aligned_cols=287  Identities=15%  Similarity=0.276  Sum_probs=251.3

Q ss_pred             CCcceEEEEEccCCC-EEEEE----------eCCCeEEEEECCCCc---eEEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457          174 HLGWVRSVAFDHSNT-WFCTG----------SADRTIKIWDVAKGT---LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       174 H~~~V~~l~~sp~~~-~l~tg----------s~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      +...|.+++|+|+++ +|++|          +.|+.|+|||+.+++   ....+ .|...|.+++|+|++.+|++++.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            345789999999987 99999          889999999998875   33333 4889999999999999999999999


Q ss_pred             cEEEEECCC----CeeEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCc------eEEE---eccCCccEE
Q 011457          240 QVKCWDLEQ----NKVIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKM------QIFA---LAGHDNTVC  305 (485)
Q Consensus       240 ~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~------~~~~---~~~~~~~v~  305 (485)
                      .|++||+.+    .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+++++      ....   +..|...|.
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI  169 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence            999999987    4588889999999999999998 8999999999999999999886      3333   357899999


Q ss_pred             EEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccC------CCceEEEEECCCC-CEEEEEcCC----CEEEEECCC
Q 011457          306 SVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHH------KKSVRAMALHPTE-DCFASASAE----NIKKFNLPK  373 (485)
Q Consensus       306 ~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~~-~~l~~~~~~----~i~i~d~~~  373 (485)
                      +++|+|+ +.+|++++.||.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.+    .|++||+.+
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~  249 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN  249 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence            9999999 789999999999999999999999988876      7889999999997 688888877    699999998


Q ss_pred             Cceeeeecc-CCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCC-CEE
Q 011457          374 GEFLHNMLS-QQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG-SRL  449 (485)
Q Consensus       374 ~~~~~~~~~-~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~L  449 (485)
                      +........ .|...+.+++|+| ++ +|++++.||.|++||+.+++.+..+.        .|...|++++|+|++ .+|
T Consensus       250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~~l  321 (416)
T 2pm9_A          250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP--------ARGNWCFKTKFAPEAPDLF  321 (416)
T ss_dssp             TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--------CSSSCCCCEEECTTCTTEE
T ss_pred             CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--------CCCCceEEEEECCCCCCEE
Confidence            744434445 7888999999999 77 99999999999999999988766654        367789999999999 899


Q ss_pred             EEEECCCcEEEecCCCCCCC
Q 011457          450 VTCEADKTIKMWREDETATP  469 (485)
Q Consensus       450 ~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      ++++.||.|++|++......
T Consensus       322 ~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EECCSSSEEEEEESCCCCCS
T ss_pred             EEEecCCcEEEEEccCCCCC
Confidence            99999999999999876643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.4e-38  Score=343.36  Aligned_cols=287  Identities=22%  Similarity=0.342  Sum_probs=261.5

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .+|+..|.+++++|+++.+++++.++.+.+|+...    .+.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            46888999999999999999999999999997643    57888999999999999999999999999999999999999


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEec-CCCEEEEEECCCcE
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVC  283 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i  283 (485)
                      +++.+..+.+|...|++++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| +++.|++++.||.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999999999999999987 77788889999999999999 88899999999999


Q ss_pred             EEEECCCCceEEEeccCC-ccEEEEEEcC--CCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEE
Q 011457          284 RVWDIRTKMQIFALAGHD-NTVCSVFTRP--TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS  360 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~  360 (485)
                      ++||+.++.....+..+. ..+.+++|+|  ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++.++++
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  245 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            999999888877776555 8999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             EcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCc
Q 011457          361 ASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       361 ~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~  417 (485)
                      ++.++ |++||+.+++.+..+ ..+...+.+++|+|++  .+++.+.++.+.+|++..+.
T Consensus       246 ~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          246 GSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             EETTSCEEEEETTTCSEEEEE-CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             EeCCCeEEEEECCCCcEEEEe-ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence            99877 999999999888775 5567789999999998  34555667788899876543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-40  Score=336.03  Aligned_cols=316  Identities=10%  Similarity=0.021  Sum_probs=240.3

Q ss_pred             CCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccC------CCEEEEEeCCCeEEEEECCCCce---
Q 011457          139 SERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHS------NTWFCTGSADRTIKIWDVAKGTL---  209 (485)
Q Consensus       139 ~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~------~~~l~tgs~dg~I~iwd~~~~~~---  209 (485)
                      +++..+++++.|+.+++|.............++.+|.+.|++++|+|+      +.+||+|+.||+|+|||+.++..   
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~  250 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH  250 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence            444556777788889999864433333334567889999999999996      57999999999999999987642   


Q ss_pred             --------EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEecccCCceEEE--EEecCC-CEEEEE
Q 011457          210 --------KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIRSYHGHLSGVYCL--GLHPTI-DILLTG  277 (485)
Q Consensus       210 --------~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~~~~~h~~~v~~l--~~~~~~-~~l~sg  277 (485)
                              ...+.+|...|++++|++++ +|++|+.||+|++||++++. ....+.+|...|.++  .|++++ ++|++|
T Consensus       251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          251 VFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             EEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             cceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence                    24678899999999999864 89999999999999999764 456688999999999  567887 899999


Q ss_pred             ECCCcEEEEECCCCceEEEeccCCc--cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCC
Q 011457          278 GRDSVCRVWDIRTKMQIFALAGHDN--TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE  355 (485)
Q Consensus       278 ~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~  355 (485)
                      +.|++|++||+++++++..+.+|..  .|.+++|+|++..+++++.|++|++||++++.++..+.+|...|.+++|+|++
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH  409 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence            9999999999999887777776653  58899999999999999999999999999999888888999999999999999


Q ss_pred             CEEEEEcCCC-EEEEECCCCceeeeecc----CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC-CCcccccceeeeccC
Q 011457          356 DCFASASAEN-IKKFNLPKGEFLHNMLS----QQKTIINSMAVNEEGVLATGGDNGSLWFWDWK-SGHNFQQAQTIVQPG  429 (485)
Q Consensus       356 ~~l~~~~~~~-i~i~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~  429 (485)
                      .+|++++.|+ |++|+.... .+.....    .....+..++|+|++.++....+  +.+|++. ++.....+       
T Consensus       410 ~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~--~~~~~~~~~g~~~~~l-------  479 (524)
T 2j04_B          410 PMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSS--YEVYPLTVNDVSKAKI-------  479 (524)
T ss_dssp             CBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCC--CCCCC------------------
T ss_pred             CeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCC--ceecccccCCcceeee-------
Confidence            9999999998 999998654 2211100    11225678999999843333332  3344332 33333332       


Q ss_pred             CCCCCccEEEEEEccCCC---EEEEEECCCcEEEecCCCC
Q 011457          430 SLDSEAGIYALSYDVTGS---RLVTCEADKTIKMWREDET  466 (485)
Q Consensus       430 ~~~~~~~V~~l~~s~~g~---~L~s~~~Dg~I~iW~~~~~  466 (485)
                       .+|...|++++|+|+++   .|++|+.||.|+||++...
T Consensus       480 -~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          480 -DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ---CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             -cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence             25788899999999964   9999999999999998764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.4e-38  Score=299.35  Aligned_cols=247  Identities=24%  Similarity=0.305  Sum_probs=216.2

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC--CceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK--GTLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCW  244 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~iw  244 (485)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..  .+.+.++.+|.+.|.+++|+++  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45779999999999999999999999999999999974  3678899999999999999863  8999999999999999


Q ss_pred             ECCCCe--eEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCc--eEEEeccCCccEEEEEEcCC------
Q 011457          245 DLEQNK--VIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKM--QIFALAGHDNTVCSVFTRPT------  312 (485)
Q Consensus       245 d~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~------  312 (485)
                      |+++++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+.+|...|.++.|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  56677889999999999997  8899999999999999998763  24567789999999999997      


Q ss_pred             -------CCEEEEEeCCCCEEEEECCCCe----EEeEeccCCCceEEEEECCCC---CEEEEEcCCC-EEEEECCCCc--
Q 011457          313 -------DPQVVTGSHDSTIKFWDLRYGK----TMLTLTHHKKSVRAMALHPTE---DCFASASAEN-IKKFNLPKGE--  375 (485)
Q Consensus       313 -------~~~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~~---~~l~~~~~~~-i~i~d~~~~~--  375 (485)
                             +++|++|+.|++|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|+ |++||+....  
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   4699999999999999998765    566788999999999999985   7899999887 9999997743  


Q ss_pred             eeeeec--cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          376 FLHNML--SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       376 ~~~~~~--~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      ......  ..+...+.+++|+|++ +|++++.||.|++|+...
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            122222  3567789999999999 999999999999999763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-38  Score=344.83  Aligned_cols=332  Identities=13%  Similarity=0.193  Sum_probs=260.7

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .+|...|.+++++|++.++++++.|..+++|....    .+.... ..|...|++++|+| +++|++++.|++|+|||+.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~----~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ----VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT----CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC----cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            36788999999999999999999999999997643    233333 35889999999999 8899999999999999999


Q ss_pred             CCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-----------EEecccCCceEEEEEecC-CCE
Q 011457          206 KGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI-----------RSYHGHLSGVYCLGLHPT-IDI  273 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~-----------~~~~~h~~~v~~l~~~~~-~~~  273 (485)
                      +++.+..+. |...|++++|+|++++|++|+.||.|++||++++++.           ..+.+|.+.|.+++|+|+ +..
T Consensus        88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence            999988886 7789999999999999999999999999999988764           234678999999999996 578


Q ss_pred             EEEEECCCcEEEEECCCCceEEEeccC------------------CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          274 LLTGGRDSVCRVWDIRTKMQIFALAGH------------------DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       274 l~sg~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                      |++|+.||.| +||+++++.+..+..|                  ...|.+++|+|++.+|++++.||.|++||++++++
T Consensus       167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            9999999999 9999999988888765                  47799999999999999999999999999999887


Q ss_pred             EeE--ec---c-------------CCCceEEEEEC----CCC-CEEEEEcCC------CEEEEE----------------
Q 011457          336 MLT--LT---H-------------HKKSVRAMALH----PTE-DCFASASAE------NIKKFN----------------  370 (485)
Q Consensus       336 ~~~--~~---~-------------~~~~v~~l~~~----p~~-~~l~~~~~~------~i~i~d----------------  370 (485)
                      +..  +.   .             +...|.+++|+    |++ .++++++.+      .+.+|+                
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  325 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK  325 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence            653  21   1             24479999995    443 455665433      355555                


Q ss_pred             -------------------------------------------------------CCCCceeeee------ccCCcccEE
Q 011457          371 -------------------------------------------------------LPKGEFLHNM------LSQQKTIIN  389 (485)
Q Consensus       371 -------------------------------------------------------~~~~~~~~~~------~~~~~~~i~  389 (485)
                                                                             +.++......      +..+...|+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~  405 (902)
T 2oaj_A          326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT  405 (902)
T ss_dssp             HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred             hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence                                                                   2222111100      001112333


Q ss_pred             EE----------------------------------EeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeec----cCC
Q 011457          390 SM----------------------------------AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQ----PGS  430 (485)
Q Consensus       390 ~~----------------------------------~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~----~~~  430 (485)
                      ++                                  +|+|++ +|++|+.||+|++||+.++... .......    ...
T Consensus       406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~-~~~~~~~~l~~~~~  484 (902)
T 2oaj_A          406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ-DNASFEVNLSRTLN  484 (902)
T ss_dssp             EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT-TTBCEEEEHHHHTT
T ss_pred             EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc-CCceEEeechhhcC
Confidence            33                                  446777 9999999999999999988432 1110000    001


Q ss_pred             CCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          431 LDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       431 ~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      .+|...|++++|+|+|++||+|+.||+|+||++.++
T Consensus       485 ~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          485 KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             CSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence            257788999999999999999999999999999876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.5e-38  Score=355.26  Aligned_cols=291  Identities=21%  Similarity=0.368  Sum_probs=270.1

Q ss_pred             eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      ....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEecccCCceEEEEEec--CCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          247 EQNKVIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       247 ~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                      .+++.+..+.+|...|.+++|+|  ++.++++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.
T Consensus       687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence            99999999999999999999999  4558999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCeEEeEeccC-------------CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEE
Q 011457          325 IKFWDLRYGKTMLTLTHH-------------KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      |++||+++++....+...             ...+.+++|+|++..+++++.+.+.+|++.++.....+...+...+.++
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            999999998877665421             2368899999999999999988899999999999998888899999999


Q ss_pred             EeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          392 AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       392 ~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      .|+|++ ++++++.||.|++||+.++.....+.        .|...|++++|+|+|++|++++.||.|++|++..
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCR--------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC--------CCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            999999 99999999999999999887665543        5788899999999999999999999999999754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.8e-38  Score=340.39  Aligned_cols=294  Identities=16%  Similarity=0.315  Sum_probs=265.6

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      .+..+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcC-CCCEEEEEeCC
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRP-TDPQVVTGSHD  322 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~d  322 (485)
                      |+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++ .....+.+|...|.+++|+| ++..|++++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999987 66778889999999999999 88899999999


Q ss_pred             CCEEEEECCCCeEEeEeccCC-CceEEEEECC--CCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-
Q 011457          323 STIKFWDLRYGKTMLTLTHHK-KSVRAMALHP--TEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-  397 (485)
Q Consensus       323 g~I~iwd~~~~~~~~~~~~~~-~~v~~l~~~p--~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-  397 (485)
                      |.|++||+..+.....+..+. ..+.+++|+|  ++.++++++.++ |.+||+.+++.+..+ ..+...+.++.|+|++ 
T Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~  241 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLP  241 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSS
T ss_pred             CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCC
Confidence            999999999888777776554 8899999999  999999999888 999999999887775 5677889999999999 


Q ss_pred             eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE-EEEEECCCcEEEecCCCCC
Q 011457          398 VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR-LVTCEADKTIKMWREDETA  467 (485)
Q Consensus       398 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~-L~s~~~Dg~I~iW~~~~~~  467 (485)
                      +|++++.||.|++||+.+++....+.        .+...+.+++|+|+|.. +++++.|+.+.+|++....
T Consensus       242 ~l~~~~~dg~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          242 IIISGSEDGTLKIWNSSTYKVEKTLN--------VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEEC--------CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEee--------cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence            99999999999999999987766554        35678999999999874 2455557778999876543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.2e-37  Score=307.67  Aligned_cols=277  Identities=21%  Similarity=0.410  Sum_probs=238.7

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      .++.|+|+++ ++||+|. |++|+|||..+++....+.  +|...|++|+|+|++++|++|+.||.|++||+++++.++.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            4788999975 5777775 8999999999998877654  6778899999999999999999999999999999999999


Q ss_pred             ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC
Q 011457          255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG  333 (485)
Q Consensus       255 ~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~  333 (485)
                      +.+|...+.+++++  +.+|++|+.|+.+++||.... ..+..+.+|...+..+.+++++.++++++.|+.|++||...+
T Consensus       185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            99999999998876  579999999999999999864 456778899999999999999999999999999999999876


Q ss_pred             e----EEeEeccCCCceEEEEECCCCC-EEEEE--cCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe-
Q 011457          334 K----TMLTLTHHKKSVRAMALHPTED-CFASA--SAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG-  403 (485)
Q Consensus       334 ~----~~~~~~~~~~~v~~l~~~p~~~-~l~~~--~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-  403 (485)
                      +    .+.....|...|.+++|+|.+. +++++  +.|+ |++||+.+++....+.  ....+.++.|++++ .+++++ 
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEEC
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEe
Confidence            5    3456778889999999999765 44443  4555 9999999999888763  33467788888887 665544 


Q ss_pred             -CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          404 -DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       404 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                       .||.|++||+.+++.+..+.        +|...|++++|+|+|++|+||+.||+|+|||+.+..
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l~--------gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAELK--------GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             cCCCEEEEEECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence             79999999999998877654        588899999999999999999999999999997644

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.2e-38  Score=317.33  Aligned_cols=289  Identities=13%  Similarity=0.254  Sum_probs=236.6

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------eEEEEcccc------------cCEEEEEEcCCC
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-----------LKLTLTGHI------------EQVRGLAVSSKH  229 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-----------~~~~~~~h~------------~~V~~l~~s~~~  229 (485)
                      .|.+.|++++|+|++++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            368999999999999999999999999999998877           577889998            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEECCCCeeE---------------------------------------EE-ecccCCceEEEEE
Q 011457          230 --TYMFSAGDDKQVKCWDLEQNKVI---------------------------------------RS-YHGHLSGVYCLGL  267 (485)
Q Consensus       230 --~~l~s~~~dg~V~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~l~~  267 (485)
                        .+|++++.|+.|++||+.++...                                       +. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999999765432                                       12 3679999999999


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCC-ceEE-------EeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCCCeE---
Q 011457          268 HPTIDILLTGGRDSVCRVWDIRTK-MQIF-------ALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRYGKT---  335 (485)
Q Consensus       268 ~~~~~~l~sg~~dg~i~iwd~~~~-~~~~-------~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~~~~---  335 (485)
                      +|++++|++| .|+.|++||+++. +.+.       .+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 8999999999944 3333       255899999999999998 9999999999999999999886   


Q ss_pred             -EeEeccCCC------------ceEEEEECCCCCEEEEEcCCCEEEEECCC-CceeeeeccCCccc--------------
Q 011457          336 -MLTLTHHKK------------SVRAMALHPTEDCFASASAENIKKFNLPK-GEFLHNMLSQQKTI--------------  387 (485)
Q Consensus       336 -~~~~~~~~~------------~v~~l~~~p~~~~l~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~--------------  387 (485)
                       +..+..+..            .|.+++|+|++.+|++++.+.|++||+.+ ++.+..+. .|...              
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ-VHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE-SCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee-ccccccccccccccccccc
Confidence             678887775            89999999999999999994499999997 76666553 33321              


Q ss_pred             -EEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceee------------------------eccCCCCCCccEEEEE
Q 011457          388 -INSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTI------------------------VQPGSLDSEAGIYALS  441 (485)
Q Consensus       388 -i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~------------------------~~~~~~~~~~~V~~l~  441 (485)
                       +..++|+|++ +|++|+.||.|++||+.+++.+......                        ......+....|..++
T Consensus       344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  423 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA  423 (447)
T ss_dssp             CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred             cceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence             2348999999 8999999999999999988765311100                        0001224556799999


Q ss_pred             EccCCCEEEEEECCCcEEEecCC
Q 011457          442 YDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       442 ~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      |+|+|++|++++.++ +++|...
T Consensus       424 ~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          424 WHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             ECSSSSEEEEECSSC-EEEEECC
T ss_pred             ECCCCCEEEEEecce-eeeeccc
Confidence            999999999998776 7788643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.3e-37  Score=296.11  Aligned_cols=281  Identities=20%  Similarity=0.334  Sum_probs=253.4

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe--cCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS--GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~--~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      +|...|.++.+++++.++++++ +..+.+|...... ....+..+.  +|...|.+++|+|++++|++++.|+.|++||+
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG-NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT-CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC-ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            5888899999999999999988 9999999876532 223334444  89999999999999999999999999999999


Q ss_pred             CCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          205 AKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       205 ~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      .+++  ....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  206 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence            9887  66778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      |++||+++++.+..+. +...+.+++|+|++++|++++.||.|++||+++++. ..+..|...|.+++|+|++.+|++++
T Consensus       207 i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (337)
T 1gxr_A          207 VRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEec
Confidence            9999999998887775 788999999999999999999999999999998765 46678889999999999999999999


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      .++ +++|++.+++.+..  ..+...+.++.|++++ +|++++.||.|++||+
T Consensus       285 ~dg~i~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          285 KDNLLNAWRTPYGASIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCcEEEEECCCCeEEEE--ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            887 99999999988754  3567889999999999 9999999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-36  Score=306.07  Aligned_cols=285  Identities=26%  Similarity=0.497  Sum_probs=254.8

Q ss_pred             ceEEEEecCCcce-EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          166 KCYRVISGHLGWV-RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       166 ~~~~~l~~H~~~V-~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      +....+.+|.+.| .++  ++++++|++|+.||.|++||+.+++....+.+|...|.+++|+  +.+|++|+.||.|++|
T Consensus       109 ~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW  184 (445)
T ss_dssp             CCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             ceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence            4567889999976 554  4568999999999999999999999999999999999999997  5699999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                      |+.+++.+..+.+|...|.++.|+  ++.+++|+.||.|++||+++++.+..+.+|...|.++.+  ++.++++++.||.
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~  260 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM  260 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred             ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence            999999999999999999999996  468999999999999999999999999999999999999  6889999999999


Q ss_pred             EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457          325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG  403 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~  403 (485)
                      |++||+++++.+..+..|...|.++.|  ++.++++++.++ |++||+.+++.+..+ ..+...+.++.++++ ++++|+
T Consensus       261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~-~l~~~~  336 (445)
T 2ovr_B          261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMELKDN-ILVSGN  336 (445)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-CCCCSCEEEEEEETT-EEEEEE
T ss_pred             EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-cCCcccEEEEEEeCC-EEEEEe
Confidence            999999999999999999999999999  788899888777 999999999988775 567778888888644 999999


Q ss_pred             CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCC
Q 011457          404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      .||.|++||+.+++.+..+..     ...|...|++++|+  +++|++|+.||.|++|++.++...
T Consensus       337 ~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          337 ADSTVKIWDIKTGQCLQTLQG-----PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI  395 (445)
T ss_dssp             TTSCEEEEETTTCCEEEEECS-----TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCeEEEEECCCCcEEEEEcc-----CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence            999999999999877655532     12477889999996  679999999999999999887643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=289.46  Aligned_cols=287  Identities=21%  Similarity=0.391  Sum_probs=238.8

Q ss_pred             ceEEEEe--cCCc--ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCC
Q 011457          166 KCYRVIS--GHLG--WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       166 ~~~~~l~--~H~~--~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      .+.++|.  +..+  .+++|+||+++ +||+| .|++|+|||+.+++.+..+.  +|...|++++|+|++++|++|+.||
T Consensus        12 ~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg   89 (318)
T 4ggc_A           12 LPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA   89 (318)
T ss_dssp             SCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence            4445554  2332  36889999876 67776 58999999999999887764  6778899999999999999999999


Q ss_pred             cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      +|++||+++++.+..+.+|...+.++.+.  +..+++++.++.+++|+.... ..+..+.+|...+..+.+.+++++|++
T Consensus        90 ~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  167 (318)
T 4ggc_A           90 EVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS  167 (318)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEE
Confidence            99999999999999999999988876654  579999999999999999875 456678899999999999999999999


Q ss_pred             EeCCCCEEEEECCCCeE----EeEeccCCCceEEEEECCCCCEE---EEEcCCC-EEEEECCCCceeeeeccCCcccEEE
Q 011457          319 GSHDSTIKFWDLRYGKT----MLTLTHHKKSVRAMALHPTEDCF---ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINS  390 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l---~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~  390 (485)
                      ++.||.|++||+++++.    ......+...|.++.++|++..+   ++++.++ |++|+..........  .+...+..
T Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~  245 (318)
T 4ggc_A          168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCS  245 (318)
T ss_dssp             EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEE
T ss_pred             EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeee
Confidence            99999999999987653    34556677889999999976533   2444445 999999988876654  35566888


Q ss_pred             EEeCCCC-eEEEE--eCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          391 MAVNEEG-VLATG--GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       391 ~~~~~~~-~l~sg--~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      +.+++++ .++++  +.||.|++||+.+++.+..+.        +|...|++++|+|+|++|+||+.||+|+|||+.+.
T Consensus       246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--------gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--------GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            8888887 55544  479999999999998877654        58889999999999999999999999999998654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.3e-38  Score=312.99  Aligned_cols=290  Identities=11%  Similarity=0.148  Sum_probs=259.0

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCC--CCcceEEEEecCCcceEEEEEccC----C---CEEEEEeC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH--APWKCYRVISGHLGWVRSVAFDHS----N---TWFCTGSA  195 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~--~~~~~~~~l~~H~~~V~~l~~sp~----~---~~l~tgs~  195 (485)
                      ..+|...|.++.+++  +++++++.|+.+.+|......  .+++....+.+|...|++++|+|+    +   ++|++++.
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~   89 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   89 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence            346889999999988  789999999999999876532  346678889999999999999999    9   99999999


Q ss_pred             CCeEEEEECCCCce-----EEEEccc-----ccCEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CeeEE-
Q 011457          196 DRTIKIWDVAKGTL-----KLTLTGH-----IEQVRGLAVS----SKHTY-MFSAGDDKQVKCWDLEQ------NKVIR-  253 (485)
Q Consensus       196 dg~I~iwd~~~~~~-----~~~~~~h-----~~~V~~l~~s----~~~~~-l~s~~~dg~V~iwd~~~------~~~~~-  253 (485)
                      ||.|++||+.+++.     ...+..|     ...|.+++|+    |++.+ |++++.||.|++||+.+      ++.+. 
T Consensus        90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  169 (397)
T 1sq9_A           90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  169 (397)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence            99999999998887     8888888     5999999999    99999 99999999999999998      66665 


Q ss_pred             ----Ee-------cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc---C---CccEEEEEEcCCCCEE
Q 011457          254 ----SY-------HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG---H---DNTVCSVFTRPTDPQV  316 (485)
Q Consensus       254 ----~~-------~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~l  316 (485)
                          .+       ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+..   |   ...|.+++|+|++.+|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l  248 (397)
T 1sq9_A          170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  248 (397)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence                66       4488999999999999 999999999999999999999999998   8   9999999999999999


Q ss_pred             EEEeCC---CCEEEEECCCCeEEeEecc-------------CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee
Q 011457          317 VTGSHD---STIKFWDLRYGKTMLTLTH-------------HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN  379 (485)
Q Consensus       317 ~s~s~d---g~I~iwd~~~~~~~~~~~~-------------~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~  379 (485)
                      ++++.|   |.|++||+++++.+..+..             |...|.+++|+|++.+|++++.++ |++||+.+++.+..
T Consensus       249 ~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (397)
T 1sq9_A          249 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT  328 (397)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEE
Confidence            999999   9999999999999999988             899999999999999999999888 99999999998888


Q ss_pred             ecc-----CC---------------cccEEEEEeCCCC-----------eEEEEeCCCcEEEEeCCCCc
Q 011457          380 MLS-----QQ---------------KTIINSMAVNEEG-----------VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       380 ~~~-----~~---------------~~~i~~~~~~~~~-----------~l~sg~~dg~I~iwd~~~~~  417 (485)
                      +..     .+               ...|.+++|++++           +|++|+.||.|++||+.+|+
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            651     44               7889999999995           89999999999999998763

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-39  Score=318.49  Aligned_cols=283  Identities=14%  Similarity=0.157  Sum_probs=236.2

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG  207 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~  207 (485)
                      +...|.++.+++++.++++++.++.+.+|....  ..++....+.+|.+.|++++|+|++++|++|+.|+.|++||+.++
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDG--NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEET--TEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccC--CceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            345788889999999999999999999997653  223677888899999999999999999999999999999999987


Q ss_pred             c---eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEecc-cCCceEEEEEecCCCEEEEEECC
Q 011457          208 T---LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK---VIRSYHG-HLSGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       208 ~---~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~---~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      +   ....+.+|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++++|++++.|
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred             CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence            7   677788899999999999999999999999999999999887   4777877 99999999999999999999999


Q ss_pred             CcEEEEECC------------------CCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE----EeE
Q 011457          281 SVCRVWDIR------------------TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT----MLT  338 (485)
Q Consensus       281 g~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~----~~~  338 (485)
                      +.|++||++                  .++.+..+ +|...|.+++|+|++++|++++.||.|++||+++++.    +..
T Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred             CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence            999999985                  34455666 8999999999999999999999999999999999887    778


Q ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCce---------------------------------------e--
Q 011457          339 LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEF---------------------------------------L--  377 (485)
Q Consensus       339 ~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~---------------------------------------~--  377 (485)
                      +..|...|.+++|+|++.+|++++++++.+|+......                                       .  
T Consensus       247 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (377)
T 3dwl_C          247 VKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN  326 (377)
T ss_dssp             EECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred             ecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence            88999999999999999999999999988888763210                                       0  


Q ss_pred             ----------eeeccCCcccEEEEEeCCCC-----eEEEEeCCCcEEEEeC
Q 011457          378 ----------HNMLSQQKTIINSMAVNEEG-----VLATGGDNGSLWFWDW  413 (485)
Q Consensus       378 ----------~~~~~~~~~~i~~~~~~~~~-----~l~sg~~dg~I~iwd~  413 (485)
                                ..+...|...|+++.+.+..     .|++|+.||.|++||+
T Consensus       327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                      00112277889999876544     5999999999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-37  Score=300.85  Aligned_cols=288  Identities=17%  Similarity=0.276  Sum_probs=261.1

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|...|.++.+++++.++++++.+..+.+|....    .+.+..+.+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            457899999999999999999999999999997643    5778899999999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe-----------eEEEecccCC--ceEEEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQNK-----------VIRSYHGHLS--GVYCLG  266 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~~-----------~~~~~~~h~~--~v~~l~  266 (485)
                      .+++....+. +...|.+++|+|++++|++++.+     |.|++||+..+.           .+..+..|..  .+.+++
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence            9999998888 88999999999999999999999     999999997653           3344455665  899999


Q ss_pred             EecCCCEEEEEECCCcEEEEECCC-CceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc
Q 011457          267 LHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS  345 (485)
Q Consensus       267 ~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  345 (485)
                      |+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+. +...
T Consensus       183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~  261 (369)
T 3zwl_B          183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP  261 (369)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence            999999999999999999999998 78888899999999999999999999999999999999999999888887 6778


Q ss_pred             eEEEEECCCCCEEEEEcCCC---------------EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457          346 VRAMALHPTEDCFASASAEN---------------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLW  409 (485)
Q Consensus       346 v~~l~~~p~~~~l~~~~~~~---------------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~  409 (485)
                      +.+++|+|++.++++++.++               +.+||..+++.+..+ ..|...|.+++|+|++ +|++++.||.|+
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  340 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISPQGTSYASGGEDGFIR  340 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence            99999999999999887664               899999999988775 5678899999999999 999999999999


Q ss_pred             EEeCCCCccc
Q 011457          410 FWDWKSGHNF  419 (485)
Q Consensus       410 iwd~~~~~~~  419 (485)
                      +|++..+...
T Consensus       341 iw~~~~~~~~  350 (369)
T 3zwl_B          341 LHHFEKSYFD  350 (369)
T ss_dssp             EEEECHHHHT
T ss_pred             EEECccccch
Confidence            9999876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3e-37  Score=310.86  Aligned_cols=290  Identities=22%  Similarity=0.397  Sum_probs=243.3

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      +....+|...|.+++|  ++++|++|+.||.|++||+.+++....+.+|...|.+++|  ++++|++|+.||.|++||+.
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            3444577888999887  7899999999999999999999999999999999999999  78899999999999999999


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE---EEeccCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI---FALAGHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                      +++.+..+.+|...|.+++|++  +.+++|+.||.|++||++++...   ..+.+|...|.++.+  +++++++|+.||.
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~  277 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT  277 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence            9999999999999999999974  59999999999999999988765   677889999999999  6889999999999


Q ss_pred             EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457          325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG  403 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~  403 (485)
                      |++||+++++.+..+..|...|.++.+  ++.++++++.++ |++||+.+++.+..+ ..|...+.++.++ ..+|++|+
T Consensus       278 i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~-~~~l~sg~  353 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGHEELVRCIRFD-NKRIVSGA  353 (435)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEECC-SSEEEEEE
T ss_pred             EEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCcCcEEEEEec-CCEEEEEe
Confidence            999999999999999999999999999  467888888777 999999999988876 5678889999993 33999999


Q ss_pred             CCCcEEEEeCCCCccccccee-eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457          404 DNGSLWFWDWKSGHNFQQAQT-IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET  471 (485)
Q Consensus       404 ~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~  471 (485)
                      .||.|++||+.++........ ........|...|++++|  ++.+|++++.||+|++|++.+......
T Consensus       354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~  420 (435)
T 1p22_A          354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA  420 (435)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred             CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence            999999999876542110000 000001257788999999  688999999999999999988765443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.6e-38  Score=307.72  Aligned_cols=289  Identities=18%  Similarity=0.202  Sum_probs=253.4

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG  207 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~  207 (485)
                      |...|.++.+++++.++++++.++.+.+|....  ..++....+.+|.+.|++++|+|++++|++++.||.|++||+.++
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            677888999999999999999999999997643  224488899999999999999999999999999999999999888


Q ss_pred             ceEEE--EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee---EEE-ecccCCceEEEEEecCCCEEEEEECCC
Q 011457          208 TLKLT--LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV---IRS-YHGHLSGVYCLGLHPTIDILLTGGRDS  281 (485)
Q Consensus       208 ~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~---~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg  281 (485)
                      +....  +..|...|.+++|+|++++|++++.||.|++||++.++.   ... ...|...|.+++|+|++++|++++.||
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            75544  467899999999999999999999999999999988762   333 367899999999999999999999999


Q ss_pred             cEEEEEC------------------CCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC
Q 011457          282 VCRVWDI------------------RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       282 ~i~iwd~------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~  343 (485)
                      .|++||+                  ..++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+..|.
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  244 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence            9999995                  4678888898999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEECCC--Cce--------------------------------e------eeeccC
Q 011457          344 KSVRAMALHPTEDCFASASAENIKKFNLPK--GEF--------------------------------L------HNMLSQ  383 (485)
Q Consensus       344 ~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~--~~~--------------------------------~------~~~~~~  383 (485)
                      ..|.+++|+|++.+++++.++.+++|++..  ++.                                .      ..+...
T Consensus       245 ~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (372)
T 1k8k_C          245 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL  324 (372)
T ss_dssp             CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred             CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccc
Confidence            999999999999999999666799999987  421                                0      223347


Q ss_pred             CcccEEEEEeC-CC----CeEEEEeCCCcEEEEeCCCCcc
Q 011457          384 QKTIINSMAVN-EE----GVLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       384 ~~~~i~~~~~~-~~----~~l~sg~~dg~I~iwd~~~~~~  418 (485)
                      |...|.++++. ++    .+|++|+.||.|++||+.+++.
T Consensus       325 h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          325 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             ccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence            88899999855 66    4999999999999999877554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-38  Score=342.06  Aligned_cols=330  Identities=12%  Similarity=0.155  Sum_probs=253.9

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG  207 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~  207 (485)
                      |...|.++.|++ +.++++++.|+.+++|+...    .+++..+. |.+.|++++|+|++++|++|+.||.|++||+.++
T Consensus        57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~----~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS----QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT----CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC----CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            567899999999 77899999999999997654    35666665 7789999999999999999999999999999988


Q ss_pred             ceE-----------EEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeccc-----------------
Q 011457          208 TLK-----------LTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQNKVIRSYHGH-----------------  258 (485)
Q Consensus       208 ~~~-----------~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-----------------  258 (485)
                      ++.           ..+.+|.+.|.+++|+|+ +.+|++|+.||.| +||+++++.++.+..|                 
T Consensus       131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  209 (902)
T 2oaj_A          131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK  209 (902)
T ss_dssp             EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred             ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence            764           223678899999999996 4789999999999 9999999999888765                 


Q ss_pred             -CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE--ec---c-------------CCccEEEEEEc----CCC-C
Q 011457          259 -LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA--LA---G-------------HDNTVCSVFTR----PTD-P  314 (485)
Q Consensus       259 -~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~v~~l~~~----~~~-~  314 (485)
                       ...|.+++|+|+|++|++|+.||.|++||+++++.+..  +.   .             |...|.+++|+    |++ .
T Consensus       210 h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~  289 (902)
T 2oaj_A          210 RTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS  289 (902)
T ss_dssp             BCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred             cCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence             47799999999999999999999999999999887653  21   1             24468888884    332 2


Q ss_pred             EEEEEeC-------------------------------------------------------------------------
Q 011457          315 QVVTGSH-------------------------------------------------------------------------  321 (485)
Q Consensus       315 ~l~s~s~-------------------------------------------------------------------------  321 (485)
                      +|++|+.                                                                         
T Consensus       290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~  369 (902)
T 2oaj_A          290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL  369 (902)
T ss_dssp             EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred             EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence            3444433                                                                         


Q ss_pred             ---CCCEEEEECCCCeEEeE-----------------------------------------eccCCCceEEEEECCCCCE
Q 011457          322 ---DSTIKFWDLRYGKTMLT-----------------------------------------LTHHKKSVRAMALHPTEDC  357 (485)
Q Consensus       322 ---dg~I~iwd~~~~~~~~~-----------------------------------------~~~~~~~v~~l~~~p~~~~  357 (485)
                         ||.|++||+.++.....                                         +.+|...+.+++|+|++.+
T Consensus       370 ~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~  449 (902)
T 2oaj_A          370 ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA  449 (902)
T ss_dssp             EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE
T ss_pred             EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE
Confidence               34455555444322111                                         1112223334556789999


Q ss_pred             EEEEcCCC-EEEEECCCCceee----ee-c-----cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccc----
Q 011457          358 FASASAEN-IKKFNLPKGEFLH----NM-L-----SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQ----  421 (485)
Q Consensus       358 l~~~~~~~-i~i~d~~~~~~~~----~~-~-----~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~----  421 (485)
                      |++++.|+ |++||+.++....    .. .     ..|...|.+++|+|++ +|++|+.||+|+|||+.+++....    
T Consensus       450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~  529 (902)
T 2oaj_A          450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP  529 (902)
T ss_dssp             EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred             EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence            99999998 9999998875311    10 1     1677889999999999 999999999999999987642110    


Q ss_pred             -----------------------------------ceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          422 -----------------------------------AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       422 -----------------------------------~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                                                         ++..  .....|...|++++|+|+| +||+|+.||+|+|||+++.
T Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~  606 (902)
T 2oaj_A          530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS--TAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP  606 (902)
T ss_dssp             --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE--EEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred             CCcccceeeeeccccCCccccccccccCCCCCCCcccee--EEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence                                               0000  0112488899999999999 9999999999999998765


Q ss_pred             C
Q 011457          467 A  467 (485)
Q Consensus       467 ~  467 (485)
                      .
T Consensus       607 ~  607 (902)
T 2oaj_A          607 A  607 (902)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.2e-37  Score=299.44  Aligned_cols=280  Identities=13%  Similarity=0.167  Sum_probs=242.7

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---eEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---LKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKC  243 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~i  243 (485)
                      +....+|.+.|++++|+|++++|++++.|+.|+|||+.+++   ....+.+|...|.+++|+|+++ +|++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            34456899999999999999999999999999999998887   3455568999999999999999 9999999999999


Q ss_pred             EEC-CCCeeEEEecc--cCCceEEEEEecCCCEEEEEECCCcEEEEECCC---------CceEEEeccCCccEEEEEEcC
Q 011457          244 WDL-EQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---------KMQIFALAGHDNTVCSVFTRP  311 (485)
Q Consensus       244 wd~-~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~~~  311 (485)
                      ||+ .+++. ..+.+  |...|.+++|+| +++|++++.|+.|++||+++         ++.+..+. |...|.+++|++
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            999 77755 67788  999999999999 99999999999999999987         76666666 889999999998


Q ss_pred             CCCEEEEEeCCCCEEEEECCC-Ce--EEeEeccCCCceEEEEECC-CCCEEEEEcCCC-EEEEECCCC------ceeeee
Q 011457          312 TDPQVVTGSHDSTIKFWDLRY-GK--TMLTLTHHKKSVRAMALHP-TEDCFASASAEN-IKKFNLPKG------EFLHNM  380 (485)
Q Consensus       312 ~~~~l~s~s~dg~I~iwd~~~-~~--~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~-i~i~d~~~~------~~~~~~  380 (485)
                      ++  +++++.|+.|++||+++ +.  .......+...|.+++|+| ++.++++++.++ +.+|++...      +....+
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence            87  99999999999999998 54  3334556788999999999 999999999888 999999876      555554


Q ss_pred             ccCC---------cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCC-CccEEEEEEccCCCEE
Q 011457          381 LSQQ---------KTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDS-EAGIYALSYDVTGSRL  449 (485)
Q Consensus       381 ~~~~---------~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~L  449 (485)
                       ..+         ...|.+++|+|++ +|++|+.||.|++||+.+++.+..+.        .| ...|++++  +++++|
T Consensus       239 -~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~h~~~v~~~~--~~~~~l  307 (342)
T 1yfq_A          239 -RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--------KFNEDSVVKIA--CSDNIL  307 (342)
T ss_dssp             -ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--------CCSSSEEEEEE--ECSSEE
T ss_pred             -ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh--------cccCCCceEec--CCCCeE
Confidence             333         3489999999998 99999999999999999988766543        35 78899999  999999


Q ss_pred             EEEECCCc-EEEecC
Q 011457          450 VTCEADKT-IKMWRE  463 (485)
Q Consensus       450 ~s~~~Dg~-I~iW~~  463 (485)
                      ++++.||+ .+.|..
T Consensus       308 ~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          308 CLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEECTHHHHCSSS
T ss_pred             EEEecCCcccccccc
Confidence            99999998 666664

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.6e-38  Score=302.02  Aligned_cols=246  Identities=23%  Similarity=0.292  Sum_probs=209.5

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd  245 (485)
                      .+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++.  .+..+.+|...|.+++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456999999999999999999999999999999998775  4677899999999999986  489999999999999999


Q ss_pred             CCCC--eeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEEcCC------
Q 011457          246 LEQN--KVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFTRPT------  312 (485)
Q Consensus       246 ~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~------  312 (485)
                      ++++  +.+..+.+|...|.+++|+|+  +.+|++|+.|+.|++||++.+..   ...+.+|...|.++.|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9887  466778899999999999998  78999999999999999987643   3445679999999999997      


Q ss_pred             -----------CCEEEEEeCCCCEEEEECCCC---eEEeEeccCCCceEEEEECCCC----CEEEEEcCCC-EEEEECCC
Q 011457          313 -----------DPQVVTGSHDSTIKFWDLRYG---KTMLTLTHHKKSVRAMALHPTE----DCFASASAEN-IKKFNLPK  373 (485)
Q Consensus       313 -----------~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~l~~~p~~----~~l~~~~~~~-i~i~d~~~  373 (485)
                                 +.+|++|+.|++|++||++..   +.+..+.+|...|.+++|+|++    .+|++++.|+ |++|++.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       468999999999999999765   4677788999999999999986    7899999888 99999876


Q ss_pred             C---ceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          374 G---EFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       374 ~---~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                      .   .........+...|.+++|+|++ +|++++.||.|++|+...
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            3   22222334567889999999999 999999999999999753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-37  Score=303.70  Aligned_cols=258  Identities=23%  Similarity=0.269  Sum_probs=225.2

Q ss_pred             eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC--CCceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEE
Q 011457          167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--KGTLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVK  242 (485)
Q Consensus       167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~  242 (485)
                      ++..+.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++....+.+|...|.+++|+++  +++|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            456788999999999999999999999999999999998  56777889999999999999977  89999999999999


Q ss_pred             EEECCCCe--eEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCc--eEEEeccCCccEEEEEEcC-----
Q 011457          243 CWDLEQNK--VIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKM--QIFALAGHDNTVCSVFTRP-----  311 (485)
Q Consensus       243 iwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~-----  311 (485)
                      +||+.+++  .+..+..|...|.+++|+|+  +++|++++.||.|++||++++.  ....+..|...|.++.|+|     
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99999987  77888889999999999999  9999999999999999998873  4556778999999999999     


Q ss_pred             --------CCCEEEEEeCCCCEEEEECCCCe----EEeEeccCCCceEEEEECCC---CCEEEEEcCCC-EEEEECCCCc
Q 011457          312 --------TDPQVVTGSHDSTIKFWDLRYGK----TMLTLTHHKKSVRAMALHPT---EDCFASASAEN-IKKFNLPKGE  375 (485)
Q Consensus       312 --------~~~~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~---~~~l~~~~~~~-i~i~d~~~~~  375 (485)
                              ++.+|++++.||.|++||++.+.    ....+..|...|.+++|+|+   +.+|++++.++ |++||+.++.
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                    68999999999999999998764    45677889999999999999   89999999887 9999998874


Q ss_pred             e----eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccccccee
Q 011457          376 F----LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       376 ~----~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      .    .......+...+.+++|+|++ +|++++.||.|++|++..+........
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  296 (379)
T 3jrp_A          243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE  296 (379)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEE
T ss_pred             ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccccc
Confidence            2    111123477889999999999 999999999999999986554444433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-37  Score=305.50  Aligned_cols=282  Identities=11%  Similarity=0.099  Sum_probs=224.7

Q ss_pred             CcceEEEEEccCCCEEEEEeCC-------CeEEEEECCCCce----------EEEEcccccCEEEEEEcCCCCEEEEE--
Q 011457          175 LGWVRSVAFDHSNTWFCTGSAD-------RTIKIWDVAKGTL----------KLTLTGHIEQVRGLAVSSKHTYMFSA--  235 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~d-------g~I~iwd~~~~~~----------~~~~~~h~~~V~~l~~s~~~~~l~s~--  235 (485)
                      .-+|++++|+|++++|++|+.|       +.|++|++.....          ...+.+|...|.+++++  +..+++|  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            4589999999999999999764       3599999875532          13466788888888775  4556665  


Q ss_pred             ---------eCCCcEEEEECCCCeeE----EEe-----cccCCceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEE
Q 011457          236 ---------GDDKQVKCWDLEQNKVI----RSY-----HGHLSGVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIF  295 (485)
Q Consensus       236 ---------~~dg~V~iwd~~~~~~~----~~~-----~~h~~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~  295 (485)
                               +.|+.+++|++......    ...     ..+...+.+++|+|||+++++++  .|++|+|||+++++.+.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     35788999998654321    111     23445689999999999877554  68999999999999998


Q ss_pred             EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCCC-----EEE
Q 011457          296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAEN-----IKK  368 (485)
Q Consensus       296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~~-----i~i  368 (485)
                      .+. |...|.+++|+|+++++++++. +.+.+|+..+++.+..  ...|...|.+++|+|++.++++++.++     +..
T Consensus       172 ~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             EEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             EeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            886 7888999999999999999885 5677777777776543  345778899999999999999887664     677


Q ss_pred             EECCCCceee---eeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457          369 FNLPKGEFLH---NMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       369 ~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                      |++..+....   .....+...|++++|+|++ +|++|+.||.|+|||+.+++.+..+.       ..|...|++++|+|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-------~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-------QAHSFAITEVTISP  322 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-------TSSSSCEEEEEECT
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-------CcccCCEEEEEECC
Confidence            8877664321   2245677889999999999 99999999999999999988766542       25889999999999


Q ss_pred             CCCEEEEEECCCcEEEecCCCCC
Q 011457          445 TGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       445 ~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ||++|++|+.|++|+||+++...
T Consensus       323 dg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          323 DSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             TSCEEEEEETTSEEEEEECCTTT
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCC
Confidence            99999999999999999997544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=296.45  Aligned_cols=292  Identities=20%  Similarity=0.287  Sum_probs=243.1

Q ss_pred             CCcceEEEEecCCcceEEEEEccC---CCEEEEEeCCCeEEEEECCC-CceE-EEEcccccCEEEEEEcCCCCEEEEEeC
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHS---NTWFCTGSADRTIKIWDVAK-GTLK-LTLTGHIEQVRGLAVSSKHTYMFSAGD  237 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~---~~~l~tgs~dg~I~iwd~~~-~~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~  237 (485)
                      .+++.+..+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +... ..+.+|...|.+++|+|++++|++++.
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            456788889999999999999999   59999999999999999987 5444 778899999999999999999999999


Q ss_pred             CCcEEEEECCCCeeEEEecccCCceEEEEE--ecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCE
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGL--HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ  315 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~  315 (485)
                      ||.|++||+++++.+.. ..|...|.+++|  ++++++|++++.||.|++||+++++.+..+..+. .+.++.+.  ...
T Consensus       107 dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~  182 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPM  182 (368)
T ss_dssp             TSEEEEEETTTTEEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTE
T ss_pred             CCcEEEEEcCCCCceee-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCe
Confidence            99999999999987774 569999999999  8899999999999999999999999998888654 56666665  458


Q ss_pred             EEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCE----EEEEcCCC-EEEEECCCC---ceeeeeccCCc
Q 011457          316 VVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDC----FASASAEN-IKKFNLPKG---EFLHNMLSQQK  385 (485)
Q Consensus       316 l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~----l~~~~~~~-i~i~d~~~~---~~~~~~~~~~~  385 (485)
                      +++++.++.+++||++.........  .....+.++.+.++...    +++++.++ +++|++...   .....+ ..+.
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~  261 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF-KCHR  261 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE-ECSE
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee-eeee
Confidence            8999999999999998765443322  23345666666655543    88888777 999999887   334443 3333


Q ss_pred             c------------cEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE
Q 011457          386 T------------IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC  452 (485)
Q Consensus       386 ~------------~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~  452 (485)
                      .            .|.+++|+|++ +|++|+.||.|++||+.+++.+..+.        .|...|++++|+|+|++|+++
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--------QLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--------CCSSCEEEEEECTTSSCEEEE
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--------CCCCCceEEEECCCCCeEEEE
Confidence            3            69999999999 99999999999999999987766554        467889999999999999999


Q ss_pred             ECCCcEEEecCCCCC
Q 011457          453 EADKTIKMWREDETA  467 (485)
Q Consensus       453 ~~Dg~I~iW~~~~~~  467 (485)
                      +.|+..+.|++-...
T Consensus       334 s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          334 SSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             ECCCSTTCGGGCCTT
T ss_pred             ecccccccccccCCC
Confidence            999877777755433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4e-37  Score=298.08  Aligned_cols=291  Identities=18%  Similarity=0.263  Sum_probs=224.4

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcC--CCCEEEEEeCCCcEE
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSS--KHTYMFSAGDDKQVK  242 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~V~  242 (485)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|.+++|+|  ++.+|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456799999999999999999999999999999999876    46677889999999999999  699999999999999


Q ss_pred             EEECCCC---------eeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCceEEEec-------------
Q 011457          243 CWDLEQN---------KVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKMQIFALA-------------  298 (485)
Q Consensus       243 iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------------  298 (485)
                      +||++++         +.+..+..|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999887         668888899999999999999  9999999999999999999876543322             


Q ss_pred             cCCccEEEEEEcCC---CCEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCCC----CEEEEEcCCC-EEE
Q 011457          299 GHDNTVCSVFTRPT---DPQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTE----DCFASASAEN-IKK  368 (485)
Q Consensus       299 ~~~~~v~~l~~~~~---~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~----~~l~~~~~~~-i~i  368 (485)
                      .|...+.++.|+|+   +.++++++.|+.+.+|+...++.  +..+..|...|.+++|+|++    .+|++++.++ |++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            57889999999997   89999999999998888887765  66788899999999999998    7899998887 999


Q ss_pred             EECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe----CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457          369 FNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG----DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD  443 (485)
Q Consensus       369 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  443 (485)
                      ||+..+...... .............+.. .+..+.    ....+.+|+....+.+..+        ..|...|++++|+
T Consensus       245 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~s  315 (351)
T 3f3f_A          245 FKITEKLSPLAS-EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--------DDHNGEVWSVSWN  315 (351)
T ss_dssp             EEEEECC----------------------------------------CCSEEEEEEEEE--------CTTSSCEEEEEEC
T ss_pred             EeCCCCcCcccc-CCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE--------ecccccEEEEEEc
Confidence            999876544332 1222222233333333 233322    2334444444333333222        2578889999999


Q ss_pred             cCCCEEEEEECCCcEEEecCCCCCC
Q 011457          444 VTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       444 ~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      |++++|++++.||.|+||++..+..
T Consensus       316 ~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          316 LTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             SSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             CCCCEEEEecCCCcEEEEecCcCcc
Confidence            9999999999999999999987654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-36  Score=300.65  Aligned_cols=280  Identities=14%  Similarity=0.188  Sum_probs=236.5

Q ss_pred             CCCCcceeecccCCCC-cccccccccCCCCCCCCCCCCCCcceEEEE--ecCCcceEEEEEcc-CCCEEEEEeCCCeEEE
Q 011457          126 SGKSSAIVSTSASSER-NLSTSAIMERIPSKWPRPEWHAPWKCYRVI--SGHLGWVRSVAFDH-SNTWFCTGSADRTIKI  201 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~-~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l--~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~i  201 (485)
                      .+|...|.++.+++++ .++++++.|+.+.+|.....    +....+  .+|.+.|.+++|+| ++++|++++.|+.|++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ----NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST----TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc----ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            4688999999999998 89999999999999987642    233334  47999999999999 7899999999999999


Q ss_pred             EECCCCceEEEEccc---ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEE
Q 011457          202 WDVAKGTLKLTLTGH---IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTG  277 (485)
Q Consensus       202 wd~~~~~~~~~~~~h---~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg  277 (485)
                      ||+.+ .....+..+   ...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|++|
T Consensus       146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  223 (383)
T 3ei3_B          146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS  223 (383)
T ss_dssp             EETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred             EECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence            99986 455555444   488999999999999999999999999999 5788899999999999999999998 99999


Q ss_pred             ECCCcEEEEECCC----CceEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCCeEEeEeccCC---------
Q 011457          278 GRDSVCRVWDIRT----KMQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---------  343 (485)
Q Consensus       278 ~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------  343 (485)
                      +.|+.|++||+++    +..+..+ +|...|.+++|+| ++.+|++++.|+.|++||+++++....+..|.         
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  302 (383)
T 3ei3_B          224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP  302 (383)
T ss_dssp             ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred             eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccc
Confidence            9999999999998    5566666 6999999999999 99999999999999999999887766665432         


Q ss_pred             --------CceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC-CcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          344 --------KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ-QKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       344 --------~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                              ..+..++|+|++.+  +++.++ |++||+.+++.+..+... +...+.+++|++++ +|++|+ ||.|++||
T Consensus       303 ~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~  379 (383)
T 3ei3_B          303 IKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN  379 (383)
T ss_dssp             CCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             eEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence                    23344556666655  444555 999999999998887544 46778888999999 888886 99999999


Q ss_pred             CCC
Q 011457          413 WKS  415 (485)
Q Consensus       413 ~~~  415 (485)
                      +++
T Consensus       380 ~~~  382 (383)
T 3ei3_B          380 RED  382 (383)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.2e-36  Score=287.53  Aligned_cols=253  Identities=18%  Similarity=0.297  Sum_probs=213.6

Q ss_pred             EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEE
Q 011457          211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ--NKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVW  286 (485)
Q Consensus       211 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iw  286 (485)
                      ..+.+|...|.+++|+|++++|++|+.|++|+|||+..  .+.+..+.+|...|.+++|+++  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45778999999999999999999999999999999974  3678899999999999999863  8899999999999999


Q ss_pred             ECCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCeE--EeEeccCCCceEEEEECCC------
Q 011457          287 DIRTKM--QIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKT--MLTLTHHKKSVRAMALHPT------  354 (485)
Q Consensus       287 d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~------  354 (485)
                      |+++++  .+..+.+|...|.+++|+|+  +.+|++++.||.|++||++.+..  ...+..|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            999874  56778889999999999997  88999999999999999987632  4567789999999999997      


Q ss_pred             -------CCEEEEEcCCC-EEEEECCCCce---eeeeccCCcccEEEEEeCCC---C-eEEEEeCCCcEEEEeCCCCccc
Q 011457          355 -------EDCFASASAEN-IKKFNLPKGEF---LHNMLSQQKTIINSMAVNEE---G-VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       355 -------~~~l~~~~~~~-i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~-~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                             +.+|++++.|+ |++||+.++..   ....+..|...|.+++|+|+   + +|++++.||.|++||+.++...
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   46899998887 99999987652   22234678899999999998   3 8999999999999999875321


Q ss_pred             ccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       420 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      ......   ....+...|.+++|+|+|++|++++.||+|+||+....
T Consensus       243 ~~~~~~---~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          243 WKKTLL---KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             CEEEES---SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cceeee---ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            111110   01246778999999999999999999999999997643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3e-37  Score=301.90  Aligned_cols=282  Identities=13%  Similarity=0.218  Sum_probs=242.3

Q ss_pred             CCCCcceeecccCCC----CcccccccccCCCCCCCCCCCCCCcceEEEEec-----CCcceEEEEEccC----CCEEEE
Q 011457          126 SGKSSAIVSTSASSE----RNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-----HLGWVRSVAFDHS----NTWFCT  192 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~----~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-----H~~~V~~l~~sp~----~~~l~t  192 (485)
                      .+|...|.++.++|+    ...+.++..+..+.+|.....    +.+..+..     |.+.|++++|+|+    +.+|++
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ----GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG----GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC----cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence            368899999999973    344445555568899976532    23333332     6688999999998    679999


Q ss_pred             EeCCCeEEEEECCCCceEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEe---cccCCceEEEEEe
Q 011457          193 GSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSY---HGHLSGVYCLGLH  268 (485)
Q Consensus       193 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~  268 (485)
                      |+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+..+   .+|...|.+++|+
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence            99999999999999999999999999999999999 8999999999999999999999999988   6899999999999


Q ss_pred             cCCCEEEEEECCCcEEEEECCCCceEEEec----------------------------cCCccEEEEEEcCCCCEEEEEe
Q 011457          269 PTIDILLTGGRDSVCRVWDIRTKMQIFALA----------------------------GHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       269 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      |++++|++++.||.|++||+++++....+.                            .|...|.++.|+  +++|++++
T Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~  248 (366)
T 3k26_A          171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS  248 (366)
T ss_dssp             TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred             CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence            999999999999999999999765543333                            399999999998  77999999


Q ss_pred             CCCCEEEEECCCCeE--------------EeEeccCCCceEEEEECCC--CCEEEEEcCCC-EEEEECCCCceee----e
Q 011457          321 HDSTIKFWDLRYGKT--------------MLTLTHHKKSVRAMALHPT--EDCFASASAEN-IKKFNLPKGEFLH----N  379 (485)
Q Consensus       321 ~dg~I~iwd~~~~~~--------------~~~~~~~~~~v~~l~~~p~--~~~l~~~~~~~-i~i~d~~~~~~~~----~  379 (485)
                      .||.|++||++++..              +..+..|...|.+++|+|+  +.+|++++.++ |++||+.+++...    .
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  328 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT  328 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred             cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence            999999999987643              7778888999999999999  99999999887 9999999876432    3


Q ss_pred             eccCC--cccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          380 MLSQQ--KTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       380 ~~~~~--~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      + ..+  ...|.+++|++++ +|++++.||.|++||+.
T Consensus       329 ~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          329 L-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             E-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             E-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            3 344  6889999999999 99999999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-36  Score=285.42  Aligned_cols=283  Identities=18%  Similarity=0.283  Sum_probs=252.0

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..+|...|.++.+ +++.++++++.|+.+.+|...    ..+....+..|.+.|.+++|+|++++|++|+.||.|++|++
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD----DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES----SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC----CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence            3468899999999 899999999999999999863    35677888899999999999999999999999999999998


Q ss_pred             CCC---ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec-CCCEEEEEECC
Q 011457          205 AKG---TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP-TIDILLTGGRD  280 (485)
Q Consensus       205 ~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sg~~d  280 (485)
                      ...   +....+.+|...|.++.|  ++.+|++++.||.|++||  .++.+..+..|...+.++.|+| +++++++++.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred             eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence            654   567788899999999999  577999999999999999  6788888999999999999998 89999999999


Q ss_pred             CcEEEEECCCCceEEEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          281 SVCRVWDIRTKMQIFALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      |.|++||  ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..|...|.+++|+|++. |+
T Consensus       165 ~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~  240 (313)
T 3odt_A          165 KTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV  240 (313)
T ss_dssp             SCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE
T ss_pred             CCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE
Confidence            9999999  4556677776 899999999999987 99999999999999999999999999999999999999995 66


Q ss_pred             EEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 011457          360 SASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ  421 (485)
Q Consensus       360 ~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~  421 (485)
                      +++.++ |++||+.+++.+..+ ..+...+.++.|++++.+++++.||.|++||+.+++....
T Consensus       241 ~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          241 SCGEDRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEETTSEEEEECTTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEecCCEEEEEECCCCceeEEE-eccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeeh
Confidence            666665 999999999988776 5667789999999999888899999999999998765544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-36  Score=296.83  Aligned_cols=276  Identities=22%  Similarity=0.368  Sum_probs=237.7

Q ss_pred             CCcccccccccCCCCCCCCCCCCCCcceEEEEec-CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc
Q 011457          140 ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE  218 (485)
Q Consensus       140 ~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  218 (485)
                      ++..+++++.++.+.+|....    .+....+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|..
T Consensus       102 s~~~l~~~~~d~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  177 (401)
T 4aez_A          102 SNLNVVAVALERNVYVWNADS----GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA  177 (401)
T ss_dssp             CTTSEEEEEETTEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             cCCCEEEEECCCeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence            345567788999999997744    344555554 899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457          219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLE-QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  297 (485)
                      .|.+++|  ++.+|++++.||.|++||++ .+..+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+
T Consensus       178 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  255 (401)
T 4aez_A          178 RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK  255 (401)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred             ceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence            9999999  45799999999999999998 56778888999999999999999999999999999999999999999999


Q ss_pred             ccCCccEEEEEEcCCCC-EEEEEe--CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc--CCC-EEEEEC
Q 011457          298 AGHDNTVCSVFTRPTDP-QVVTGS--HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS--AEN-IKKFNL  371 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--~~~-i~i~d~  371 (485)
                      ..|...|.+++|+|++. ++++++  .|+.|++||+++++.+..+. +...|.+++|+|++.++++++  .++ |++|++
T Consensus       256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred             cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence            99999999999999765 555554  79999999999999988886 567899999999999999854  555 999999


Q ss_pred             CCCceeeee-ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc
Q 011457          372 PKGEFLHNM-LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA  422 (485)
Q Consensus       372 ~~~~~~~~~-~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~  422 (485)
                      .+++..... ...|...|.++.|++++ +|++++.||.|++||+.+++.+...
T Consensus       335 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          335 SSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             ETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             CCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            987655443 35778899999999999 9999999999999999998776554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.7e-37  Score=309.49  Aligned_cols=289  Identities=17%  Similarity=0.199  Sum_probs=234.9

Q ss_pred             CCCCcceeecccCCC-CcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEE
Q 011457          126 SGKSSAIVSTSASSE-RNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~-~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd  203 (485)
                      .+|...|.+++++|. ..++++++.|+.+.+|+....  ....+..+.+|.+.|++|+|+| ++++|++|+.||+|+|||
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~--~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK--DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC--SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC--CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            356778999999985 568999999999999976432  2344556779999999999998 688999999999999999


Q ss_pred             CCCCceEEEEcc--cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEEECC
Q 011457          204 VAKGTLKLTLTG--HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRD  280 (485)
Q Consensus       204 ~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~d  280 (485)
                      ++++........  +...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|.+++|+|+++ +|++|+.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence            987655444433  34467899999999999999999999999986 466778889999999999999876 78899999


Q ss_pred             CcEEEEECCCCceEEE---eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC------ceEEEEE
Q 011457          281 SVCRVWDIRTKMQIFA---LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK------SVRAMAL  351 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~v~~l~~  351 (485)
                      +.|++||+++.+....   ..+|...|.+++|+|++.+|++++.||.|++||+++++....+..|..      .+....|
T Consensus       273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW  352 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred             ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence            9999999988764433   357999999999999999999999999999999999888777655432      2334567


Q ss_pred             CCCCCEEEEEcC------------CC-EEEEECCCCceeeeeccCCcccEEEE-EeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          352 HPTEDCFASASA------------EN-IKKFNLPKGEFLHNMLSQQKTIINSM-AVNEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       352 ~p~~~~l~~~~~------------~~-i~i~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      +|++.+++++..            ++ |++||..+++.+..+..++...|.++ +|+|++ +|++| .|+.|+|||++++
T Consensus       353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~~~g  431 (435)
T 4e54_B          353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASA-MGYHILIWSQQEA  431 (435)
T ss_dssp             CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCCC--
T ss_pred             cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEECCcC
Confidence            777776666532            22 99999999999988877788777776 699999 66665 5889999999987


Q ss_pred             cc
Q 011457          417 HN  418 (485)
Q Consensus       417 ~~  418 (485)
                      +.
T Consensus       432 k~  433 (435)
T 4e54_B          432 RT  433 (435)
T ss_dssp             --
T ss_pred             ee
Confidence            64

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=295.90  Aligned_cols=286  Identities=13%  Similarity=0.194  Sum_probs=240.5

Q ss_pred             CCCCcceeecccCCCCc-ccccccc---cCCCCCCCCCCCCCCcceE-EEEecCCcceEEEEEccC---CCEEEEEeCCC
Q 011457          126 SGKSSAIVSTSASSERN-LSTSAIM---ERIPSKWPRPEWHAPWKCY-RVISGHLGWVRSVAFDHS---NTWFCTGSADR  197 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~-~~~t~~~---~~~~~~w~~~~~~~~~~~~-~~l~~H~~~V~~l~~sp~---~~~l~tgs~dg  197 (485)
                      .+|...|.++.++|++. ++++++.   |+.+.+|.....    +.. ....+|.+.|++++|+|+   +++|++|+.||
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG----DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS----SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC----cccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            35888999999999885 5556665   899999976542    222 223389999999999998   69999999999


Q ss_pred             eEEEEECCCCc-eEEEEcccccCEEEEEE------cCCCCEEEEEeCCCcEEEEECCCCe-eEEEecccCC----ceEEE
Q 011457          198 TIKIWDVAKGT-LKLTLTGHIEQVRGLAV------SSKHTYMFSAGDDKQVKCWDLEQNK-VIRSYHGHLS----GVYCL  265 (485)
Q Consensus       198 ~I~iwd~~~~~-~~~~~~~h~~~V~~l~~------s~~~~~l~s~~~dg~V~iwd~~~~~-~~~~~~~h~~----~v~~l  265 (485)
                      .|++||+.+++ ....+.+|...|.++.|      +|++++|++++.||.|++||+.+++ .+..+..|..    .+.++
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            99999999988 88899999999999954      6889999999999999999999887 6777765554    79999


Q ss_pred             E----EecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCCCeEEeE
Q 011457          266 G----LHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRYGKTMLT  338 (485)
Q Consensus       266 ~----~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~~~~~~~  338 (485)
                      +    |+|++++|++++.||.|++||+++++.... ..|...|.++.|+|   ++.+|++++.||.|++||+++++....
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            8    678999999999999999999999887554 56899999999999   899999999999999999988766555


Q ss_pred             ec-----cCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCCc-------------------eeeeeccCCcccEEEEE
Q 011457          339 LT-----HHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKGE-------------------FLHNMLSQQKTIINSMA  392 (485)
Q Consensus       339 ~~-----~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~-------------------~~~~~~~~~~~~i~~~~  392 (485)
                      +.     .|...|.+++|+|++. +|++++.++ |++||+..+.                   .+.. ...|...|.+++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~v~~~~  328 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN-VTLSTQPISSLD  328 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE-EECCSSCEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec-cccCCCCeeEEE
Confidence            44     8899999999999998 888888887 9999997643                   2333 456788999999


Q ss_pred             eCCCC-eEE-EEeCCCcEEEEeCCCCc
Q 011457          393 VNEEG-VLA-TGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       393 ~~~~~-~l~-sg~~dg~I~iwd~~~~~  417 (485)
                      |++++ +|+ +++.||.|++||+.+.+
T Consensus       329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          329 WSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             ECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             EcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            99999 777 89999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=292.77  Aligned_cols=326  Identities=14%  Similarity=0.178  Sum_probs=242.4

Q ss_pred             CCCCcceeecccCC-CCcccccccccCCCCCCCCCCCCCCcceEEEE---------ecCCcceEEEEEcc-CCCEEEEEe
Q 011457          126 SGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI---------SGHLGWVRSVAFDH-SNTWFCTGS  194 (485)
Q Consensus       126 ~~~~~~i~~~~~~~-~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l---------~~H~~~V~~l~~sp-~~~~l~tgs  194 (485)
                      .+|...|.++.+++ ++.++++++.|+.+.+|...............         .+|.+.|.+++|+| ++.+|++++
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            45889999999999 99999999999999999876543332221111         25999999999999 788999999


Q ss_pred             CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457          195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH---TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~  271 (485)
                      .||.|++||+.+++....+. +...+.++.|++.+   .++++++.||.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (408)
T 4a11_B          120 FDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY  198 (408)
T ss_dssp             TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred             CCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence            99999999999999888877 77899999999854   599999999999999999999999999999999999999998


Q ss_pred             C-EEEEEECCCcEEEEECCCCc-eEEEe---------------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457          272 D-ILLTGGRDSVCRVWDIRTKM-QIFAL---------------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK  334 (485)
Q Consensus       272 ~-~l~sg~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~  334 (485)
                      + +|++|+.||.|++||++++. .+..+               ..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence            8 69999999999999998765 34444               4688999999999999999999999999999999887


Q ss_pred             EEeEeccCC------CceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCc
Q 011457          335 TMLTLTHHK------KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGS  407 (485)
Q Consensus       335 ~~~~~~~~~------~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~  407 (485)
                      ....+..+.      .....+.....+.+++++.++.+.+||+.+++.+..+ ..|...|.+++|+|++ +|++|+.||.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHYKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence            655443221      1222333344555666666666999999999988876 5678899999999998 9999999999


Q ss_pred             EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEECCCcEEEecCC
Q 011457          408 LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       408 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      |++||+.+++.+.......           ....+++ ....+.+.+.|+.+++|+..
T Consensus       358 i~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          358 ILAWVPSLYEPVPDDDETT-----------TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EEEEEECC--------------------------------------------------
T ss_pred             EEEEeCCCCCccCCCCceE-----------eccccccccceeecccCccCceeecCCc
Confidence            9999999987665433211           1112222 33455677789999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.2e-36  Score=301.23  Aligned_cols=283  Identities=17%  Similarity=0.237  Sum_probs=239.8

Q ss_pred             ceEEEEEccCCCEE-EEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-
Q 011457          177 WVRSVAFDHSNTWF-CTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQN-  249 (485)
Q Consensus       177 ~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~-  249 (485)
                      ....++++|+...+ ++++.||.|+||++.+.    .....+.+|.+.|.+++|+| ++.+|++|+.||.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34468888877544 45788999999999654    23456788999999999999 9999999999999999999988 


Q ss_pred             ------eeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEe--ccCCccEEEEEEcCCCCEEEEEe
Q 011457          250 ------KVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFAL--AGHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       250 ------~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                            +.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+  .+|...|.+++|+|++.+|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  6688889999999999999998 69999999999999999999999999  78999999999999999999999


Q ss_pred             CCCCEEEEECCCCeEEeEe-ccCCCc-eEEEEECCCCCEEEEE---cCCC-EEEEECCCCce-eeeeccCCcccEEEEEe
Q 011457          321 HDSTIKFWDLRYGKTMLTL-THHKKS-VRAMALHPTEDCFASA---SAEN-IKKFNLPKGEF-LHNMLSQQKTIINSMAV  393 (485)
Q Consensus       321 ~dg~I~iwd~~~~~~~~~~-~~~~~~-v~~l~~~p~~~~l~~~---~~~~-i~i~d~~~~~~-~~~~~~~~~~~i~~~~~  393 (485)
                      .||.|++||+++++.+..+ ..|... +.++.|+|++.+|+++   +.++ |++||+.+++. +......+...+.++.|
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  275 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF  275 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence            9999999999999999888 677765 8999999999999998   5555 99999998765 33333356677999999


Q ss_pred             CCCC-eEE-EEeCCCcEEEEeCCCCcc-cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          394 NEEG-VLA-TGGDNGSLWFWDWKSGHN-FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       394 ~~~~-~l~-sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ++++ +|+ +|+.||.|++||+.+++. +..+..      ..+...|.+++|+|++.++++  .|+.+++|++.++.
T Consensus       276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~------~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM------FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE------ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc------cccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            9998 664 566799999999998874 333332      125678999999999988875  57799999987643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-36  Score=301.97  Aligned_cols=285  Identities=16%  Similarity=0.237  Sum_probs=241.1

Q ss_pred             CCCCcceeecccCC-CCcccccccccCCCCCCCCCCC--CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 011457          126 SGKSSAIVSTSASS-ERNLSTSAIMERIPSKWPRPEW--HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIW  202 (485)
Q Consensus       126 ~~~~~~i~~~~~~~-~~~~~~t~~~~~~~~~w~~~~~--~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iw  202 (485)
                      .+|...|.++.+++ ++.++++++.|+.+++|.....  ...++....+ +|.+.|++++|+|++++|++|+.||.|++|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  138 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL  138 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            46889999999999 9999999999999999975431  1123334444 599999999999999999999999999999


Q ss_pred             ECC---CCceEEEEcc------------cccCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--cCCceE
Q 011457          203 DVA---KGTLKLTLTG------------HIEQVRGLA--VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--HLSGVY  263 (485)
Q Consensus       203 d~~---~~~~~~~~~~------------h~~~V~~l~--~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--h~~~v~  263 (485)
                      |+.   +++....+.+            +...+.++.  +++++.+|++++.||.|++||+++++.+..+.+  |...|+
T Consensus       139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~  218 (437)
T 3gre_A          139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS  218 (437)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred             EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence            994   5555544432            345566666  557899999999999999999999999999987  899999


Q ss_pred             EEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcC----CCCEEEEEeCCCCEEEEECCCCeEEeE
Q 011457          264 CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRP----TDPQVVTGSHDSTIKFWDLRYGKTMLT  338 (485)
Q Consensus       264 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~----~~~~l~s~s~dg~I~iwd~~~~~~~~~  338 (485)
                      +++|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++++|    ++.+|++++.||.|++||+++++.+..
T Consensus       219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (437)
T 3gre_A          219 SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA  298 (437)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence            99999999999999999999999999999988886 7888999996665    577999999999999999999998877


Q ss_pred             ecc--------------------------CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC--------
Q 011457          339 LTH--------------------------HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ--------  383 (485)
Q Consensus       339 ~~~--------------------------~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~--------  383 (485)
                      +..                          |...|.+++|+ ++.+|++++.++ |++||+.+++....+..+        
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  377 (437)
T 3gre_A          299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFI  377 (437)
T ss_dssp             EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEE
T ss_pred             EEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEE
Confidence            764                          44568888998 778899999877 999999998877665432        


Q ss_pred             ----------------------------CcccEEEEEeCCC--C-eEEEEeCCCcEEEEe
Q 011457          384 ----------------------------QKTIINSMAVNEE--G-VLATGGDNGSLWFWD  412 (485)
Q Consensus       384 ----------------------------~~~~i~~~~~~~~--~-~l~sg~~dg~I~iwd  412 (485)
                                                  |...|+++.+.++  + +|++|+.||.|++|+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          378 PTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                        7788999999887  5 999999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-35  Score=286.24  Aligned_cols=248  Identities=19%  Similarity=0.294  Sum_probs=204.9

Q ss_pred             EEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEecccCCceEEEEEec--CCCEEEEEECCCcEEEEE
Q 011457          212 TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK--VIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       212 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd  287 (485)
                      .+.+|...|++++|+|++++|++|+.|++|++||+.+++  .+..+.+|...|.+++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998774  5678899999999999976  488999999999999999


Q ss_pred             CCCC--ceEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCeE---EeEeccCCCceEEEEECCC------
Q 011457          288 IRTK--MQIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGKT---MLTLTHHKKSVRAMALHPT------  354 (485)
Q Consensus       288 ~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~------  354 (485)
                      ++++  .....+.+|...|.+++|+|+  +.+|++|+.||.|++||++.+..   ...+..|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9987  466778899999999999998  78999999999999999987632   3456678889999999997      


Q ss_pred             -----------CCEEEEEcCCC-EEEEECCCCc---eeeeeccCCcccEEEEEeCCCC-----eEEEEeCCCcEEEEeCC
Q 011457          355 -----------EDCFASASAEN-IKKFNLPKGE---FLHNMLSQQKTIINSMAVNEEG-----VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       355 -----------~~~l~~~~~~~-i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~-----~l~sg~~dg~I~iwd~~  414 (485)
                                 +.+|++++.|+ |++||+..+.   .+.. +..|...|.+++|+|++     +|++|+.||+|++||+.
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence                       46899998887 9999997552   3333 46788899999999973     79999999999999997


Q ss_pred             CCcccc-cceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          415 SGHNFQ-QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       415 ~~~~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      +..... .....     ..|...|++++|+|+|++|++++.||+|+||+...
T Consensus       247 ~~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          247 DASSNTWSPKLL-----HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             STTCCCCBCCEE-----EECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             Cccccchhhhhh-----hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            632110 00111     13567899999999999999999999999999763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-35  Score=285.90  Aligned_cols=256  Identities=18%  Similarity=0.289  Sum_probs=219.8

Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEecccCCceEEEEEecC--CCEEEEEECCCc
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE--QNKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSV  282 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~  282 (485)
                      |+++..+.+|...|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|...|++++|+++  +++|++|+.||.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            34566788999999999999999999999999999999998  66778889999999999999977  899999999999


Q ss_pred             EEEEECCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECC---
Q 011457          283 CRVWDIRTKM--QIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHP---  353 (485)
Q Consensus       283 i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p---  353 (485)
                      |++||+++++  .+..+..|...|.+++|+|+  +.+|++++.||.|++||++.+.  ....+..|...|.+++|+|   
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999999987  77788889999999999999  9999999999999999999873  4456678889999999999   


Q ss_pred             ----------CCCEEEEEcCCC-EEEEECCCCcee---eeeccCCcccEEEEEeCCC---C-eEEEEeCCCcEEEEeCCC
Q 011457          354 ----------TEDCFASASAEN-IKKFNLPKGEFL---HNMLSQQKTIINSMAVNEE---G-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       354 ----------~~~~l~~~~~~~-i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~---~-~l~sg~~dg~I~iwd~~~  415 (485)
                                ++.+|++++.++ |++||+.++...   ......|...|.+++|+|+   + +|++++.||.|++||+.+
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                      689999998887 999999876532   2234568889999999999   7 999999999999999998


Q ss_pred             CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          416 GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      +........   .....+...|++++|+|+|++|++++.||.|++|++..
T Consensus       241 ~~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          241 EQGPWKKTL---LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             TTSCCEEEE---SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCccceeee---eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            753222211   11234678899999999999999999999999999874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.2e-35  Score=285.74  Aligned_cols=297  Identities=15%  Similarity=0.222  Sum_probs=232.8

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc--CCCEEEEEeCCCeEEEEE
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH--SNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--~~~~l~tgs~dg~I~iwd  203 (485)
                      .+|...|.++.+++++.++++++.|+.+.+|........++....+.+|.+.|++++|+|  ++++|++|+.||.|++||
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            479999999999999999999999999999988776677788999999999999999999  699999999999999999


Q ss_pred             CCCC---------ceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEec-------------ccC
Q 011457          204 VAKG---------TLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQNKVIRSYH-------------GHL  259 (485)
Q Consensus       204 ~~~~---------~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~~~~~~~~-------------~h~  259 (485)
                      +.++         +....+..|...|.+++|+|+  +.+|++++.||.|++||+.+++.+..+.             .|.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL  167 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence            9887         567888899999999999999  9999999999999999998876544332             578


Q ss_pred             CceEEEEEecC---CCEEEEEECCCcEEEEECCCCce--EEEeccCCccEEEEEEcCCC----CEEEEEeCCCCEEEEEC
Q 011457          260 SGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQ--IFALAGHDNTVCSVFTRPTD----PQVVTGSHDSTIKFWDL  330 (485)
Q Consensus       260 ~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~----~~l~s~s~dg~I~iwd~  330 (485)
                      ..+.+++|+|+   +++|++++.|+.+.+|+...++.  +..+.+|...|.+++|+|++    .+|++++.||.|++||+
T Consensus       168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~  247 (351)
T 3f3f_A          168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI  247 (351)
T ss_dssp             CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred             cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence            89999999997   89999999999998888887765  67778899999999999998    79999999999999999


Q ss_pred             CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-----EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC
Q 011457          331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-----IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD  404 (485)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-----i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~  404 (485)
                      +.+............+......+....+..+....     +.+|+....+.+..+ ..|...|.+++|+|++ +|++|+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~  326 (351)
T 3f3f_A          248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILSSAGD  326 (351)
T ss_dssp             EECC---------------------------------------CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEEEEET
T ss_pred             CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecccccEEEEEEcCCCCEEEEecC
Confidence            87766555444444444444555444444443322     445555555555554 5678899999999999 9999999


Q ss_pred             CCcEEEEeCCCCcccccce
Q 011457          405 NGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       405 dg~I~iwd~~~~~~~~~~~  423 (485)
                      ||.|++||+.+++.+..+.
T Consensus       327 dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          327 DGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             TSCEEEEEECTTSCEEEEE
T ss_pred             CCcEEEEecCcCcchhhee
Confidence            9999999999887665544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=296.18  Aligned_cols=285  Identities=14%  Similarity=0.240  Sum_probs=238.1

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCC-------CCcceEEEEecCC------------cceEEEEEccCC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWH-------APWKCYRVISGHL------------GWVRSVAFDHSN  187 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~-------~~~~~~~~l~~H~------------~~V~~l~~sp~~  187 (485)
                      .+.+.|.++.+++++.++++++.|+.+.+|......       ..+++...+.+|.            +.|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            367889999999999999999999999999865433       4567889999998            899999999998


Q ss_pred             --CEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-EcccccCEEEEEE
Q 011457          188 --TWFCTGSADRTIKIWDVAKGTLK---------------------------------------LT-LTGHIEQVRGLAV  225 (485)
Q Consensus       188 --~~l~tgs~dg~I~iwd~~~~~~~---------------------------------------~~-~~~h~~~V~~l~~  225 (485)
                        .+|++++.|+.|++||+.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764432                                       12 3679999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCC-CeeEE-------EecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCce---
Q 011457          226 SSKHTYMFSAGDDKQVKCWDLEQ-NKVIR-------SYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQ---  293 (485)
Q Consensus       226 s~~~~~l~s~~~dg~V~iwd~~~-~~~~~-------~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~---  293 (485)
                      +|++++|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 799999999984 44444       356899999999999998 9999999999999999999887   


Q ss_pred             -EEEeccCCc------------cEEEEEEcCCCCEEEEEeCCCCEEEEECCC-CeEEeEeccCCCc--------------
Q 011457          294 -IFALAGHDN------------TVCSVFTRPTDPQVVTGSHDSTIKFWDLRY-GKTMLTLTHHKKS--------------  345 (485)
Q Consensus       294 -~~~~~~~~~------------~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~--------------  345 (485)
                       +..+..|..            .|.+++|+|++.+|++++. +.|++||++. ++++..+..|...              
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             788888876            8999999999999999999 9999999997 8888888777532              


Q ss_pred             -eEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeec-------------------------------cCCcccEEEEE
Q 011457          346 -VRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML-------------------------------SQQKTIINSMA  392 (485)
Q Consensus       346 -v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~-------------------------------~~~~~~i~~~~  392 (485)
                       +..++|+|++.+|++++.++ |++||+.+++.+....                               ......|..++
T Consensus       344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  423 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA  423 (447)
T ss_dssp             CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred             cceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence             33499999999999999988 9999999887653110                               02234688899


Q ss_pred             eCCCC-eEEEEeCCCcEEEEeCC
Q 011457          393 VNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       393 ~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      |+|++ +|++++.+ .+++|.-+
T Consensus       424 ~~p~~~~la~~~~~-~~~~~~~~  445 (447)
T 3dw8_B          424 WHPKENIIAVATTN-NLYIFQDK  445 (447)
T ss_dssp             ECSSSSEEEEECSS-CEEEEECC
T ss_pred             ECCCCCEEEEEecc-eeeeeccc
Confidence            99999 77777766 58888643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-34  Score=290.59  Aligned_cols=276  Identities=24%  Similarity=0.455  Sum_probs=240.0

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~  206 (485)
                      ++...|.+..+  ++..+++++.|+.+.+|+..    ..+....+.+|.+.|.+++|  ++++|++|+.||.|++||+.+
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN----TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESS----SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCC----CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            45666777665  67889999999999999764    35678889999999999999  788999999999999999999


Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---EEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI---RSYHGHLSGVYCLGLHPTIDILLTGGRDSVC  283 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i  283 (485)
                      ++.+..+.+|...|.+++|++  .+|++|+.||.|++||+.+++.+   ..+.+|...|.+++|  ++++|++|+.||.|
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i  278 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI  278 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence            999999999999999999974  58999999999999999987655   677889999999999  67899999999999


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                      ++||+++++.+..+.+|...|.++.++  +.++++|+.||.|++||+++++.+..+..|...|.+++|  ++.+|++++.
T Consensus       279 ~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~  354 (435)
T 1p22_A          279 KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY  354 (435)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC
Confidence            999999999999999999999999994  679999999999999999999999999999999999999  7888999988


Q ss_pred             CC-EEEEECCCCc---------eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457          364 EN-IKKFNLPKGE---------FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       364 ~~-i~i~d~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      ++ |++||+.++.         .+..+ ..|...|.++.++ ..+|++|+.||.|++||+.+.....
T Consensus       355 dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          355 DGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQFD-EFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEEC-SSCEEECCSSSEEEEEC--------
T ss_pred             CCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEeC-CCEEEEEeCCCEEEEEECCCCCCcc
Confidence            87 9999997665         45554 6778889999992 3389999999999999998765543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5e-35  Score=287.65  Aligned_cols=283  Identities=10%  Similarity=0.012  Sum_probs=229.1

Q ss_pred             cceeecccCCCCccccccccc-------CCCCCCCCCCCCCCc----ceE--EEEecCCcceEEEEEccCCCEEEEE---
Q 011457          130 SAIVSTSASSERNLSTSAIME-------RIPSKWPRPEWHAPW----KCY--RVISGHLGWVRSVAFDHSNTWFCTG---  193 (485)
Q Consensus       130 ~~i~~~~~~~~~~~~~t~~~~-------~~~~~w~~~~~~~~~----~~~--~~l~~H~~~V~~l~~sp~~~~l~tg---  193 (485)
                      -.|.+++|++++.++++++.+       +.+++|.........    ...  ..|.+|.+.|.+++++  ++.+++|   
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            468899999999999987643       347788654432221    122  3467899999998875  5556655   


Q ss_pred             --------eCCCeEEEEECCCCceEEEE---------cccccCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEE
Q 011457          194 --------SADRTIKIWDVAKGTLKLTL---------TGHIEQVRGLAVSSKHTYMFSAG--DDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       194 --------s~dg~I~iwd~~~~~~~~~~---------~~h~~~V~~l~~s~~~~~l~s~~--~dg~V~iwd~~~~~~~~~  254 (485)
                              +.|+.+++|++.+......+         ..+...+.+++|+|||+++++++  .|++|+|||+++++++..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                    45788999998765432211         12445689999999999987554  789999999999999998


Q ss_pred             ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCCC----CEEEE
Q 011457          255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDS----TIKFW  328 (485)
Q Consensus       255 ~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~dg----~I~iw  328 (485)
                      +. |...|.+++|+|+|++|++++.+ .+.+|+..++..+..  ...|...|.+++|+|++.++++++.|+    .+++|
T Consensus       173 ~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          173 IE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             eC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            86 77889999999999999998855 567777777766543  346888999999999999999999887    58889


Q ss_pred             ECCCCeE----EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEE
Q 011457          329 DLRYGKT----MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATG  402 (485)
Q Consensus       329 d~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg  402 (485)
                      |+.....    ...+..|...|.+++|+|+|++|++++.|+ |++||+.+++.+..+..+|...|++++|+|++ +|++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            9877654    345678889999999999999999999987 99999999999999888999999999999999 99999


Q ss_pred             eCCCcEEEEeCCCC
Q 011457          403 GDNGSLWFWDWKSG  416 (485)
Q Consensus       403 ~~dg~I~iwd~~~~  416 (485)
                      +.|++|+|||+...
T Consensus       331 S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          331 SAANTIHIIKLPLN  344 (365)
T ss_dssp             ETTSEEEEEECCTT
T ss_pred             eCCCeEEEEEcCCC
Confidence            99999999999653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.2e-33  Score=283.12  Aligned_cols=276  Identities=18%  Similarity=0.328  Sum_probs=235.0

Q ss_pred             cccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE--ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q 011457          135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI--SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT  212 (485)
Q Consensus       135 ~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l--~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~  212 (485)
                      +++|+. ++++.+ .|+.+.+|+...    .++.+.+  .+|.+.|++|+|+|+|++|++|+.||.|+|||+.+++.+..
T Consensus       111 l~wS~~-n~lAvg-ld~tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          111 VDWSSG-NVLAVA-LDNSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             EEECTT-SEEEEE-ETTEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEECCC-CEEEEE-eCCEEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            345543 566655 599999997643    3455544  47888999999999999999999999999999999999999


Q ss_pred             EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK  291 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  291 (485)
                      +.+|...+.++.++  +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++||..++
T Consensus       185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            99999999998875  678999999999999998764 566788899999999999999999999999999999999876


Q ss_pred             c----eEEEeccCCccEEEEEEcCCCC-EEEE--EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc--
Q 011457          292 M----QIFALAGHDNTVCSVFTRPTDP-QVVT--GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS--  362 (485)
Q Consensus       292 ~----~~~~~~~~~~~v~~l~~~~~~~-~l~s--~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--  362 (485)
                      +    .+.....|...|.+++|+|.+. .+++  |+.|++|++||+.+++....+..+ ..+.++.|+|++..+++++  
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec
Confidence            5    3566778999999999999765 4444  457999999999999998888754 5688999999999888764  


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccc
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      .++ |++||+.+++.+..+ .+|...|.+++|+|++ +|++|+.||+|+|||+.......
T Consensus       342 ~d~~I~iwd~~~~~~v~~l-~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          342 AQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             TTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             CCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence            344 999999999998886 5788999999999999 99999999999999998765443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=285.09  Aligned_cols=283  Identities=13%  Similarity=0.101  Sum_probs=233.6

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc---eEEEEcc------------------------------------
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---LKLTLTG------------------------------------  215 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~------------------------------------  215 (485)
                      ..+|.+++|+++|++|+++ .++.|++||+.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999966666 57899999999998   6555543                                    


Q ss_pred             ------------------cccCEEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeeEEEec--ccCCceEEEEEecCCC
Q 011457          216 ------------------HIEQVRGLAVSSKHTYM-FSAGDDKQVKCWDLE--QNKVIRSYH--GHLSGVYCLGLHPTID  272 (485)
Q Consensus       216 ------------------h~~~V~~l~~s~~~~~l-~s~~~dg~V~iwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~~  272 (485)
                                        |.+.|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              33379999999999996 899999999999999  888888875  5678999999999999


Q ss_pred             EEEEEECCCcEEEEECCCCceEE----EeccCCccEEEEEEcCC---CCEEEEEeCCCCEEEEECCCCeEEeE-eccCCC
Q 011457          273 ILLTGGRDSVCRVWDIRTKMQIF----ALAGHDNTVCSVFTRPT---DPQVVTGSHDSTIKFWDLRYGKTMLT-LTHHKK  344 (485)
Q Consensus       273 ~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~l~~~~~---~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~  344 (485)
                      +|++|+.||.|++|++.++....    .+.+|...|.+++|+|+   +.+|++++.|+.|++||+++++.+.. +.+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999998876544    67789999999999999   99999999999999999999988877 558999


Q ss_pred             ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeecc------------------------CCcccEEEEEeCCCC-e
Q 011457          345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS------------------------QQKTIINSMAVNEEG-V  398 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~------------------------~~~~~i~~~~~~~~~-~  398 (485)
                      .|.+++|+ ++.+|++++.++ |++||+.+++.+..+..                        .....+..+.+++++ +
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence            99999999 999999999887 99999999988776632                        223568999999999 8


Q ss_pred             EEEEe-CCCcEEEEeC--CCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-------CCcEEEecCCCC
Q 011457          399 LATGG-DNGSLWFWDW--KSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-------DKTIKMWREDET  466 (485)
Q Consensus       399 l~sg~-~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-------Dg~I~iW~~~~~  466 (485)
                      |++++ .++.|++|++  .++..+.......     .+ ..|.+++|+|++ ++++.+.       +..|.+|.++..
T Consensus       322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-----~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          322 VAFFVEATKCIIILEMSEKQKGDLALKQIIT-----FP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             EEEEETTCSEEEEEEECSSSTTCEEEEEEEE-----CS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EEEEECCCCeEEEEEeccCCCCceeeccEec-----cC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEcC
Confidence            88888 8999999999  5553333322221     12 679999999964 5554433       556899987643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=310.10  Aligned_cols=251  Identities=23%  Similarity=0.270  Sum_probs=219.3

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC--CCceEEEEcccccCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--KGTLKLTLTGHIEQVRGLAVSSK--HTYMFSAGDDKQVKC  243 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~~~dg~V~i  243 (485)
                      +.++.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++....+.+|.+.|.+++|+++  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            45678999999999999999999999999999999998  55677889999999999999988  999999999999999


Q ss_pred             EECCCCe--eEEEecccCCceEEEEEecC--CCEEEEEECCCcEEEEECCCC--ceEEEeccCCccEEEEEEcC------
Q 011457          244 WDLEQNK--VIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTK--MQIFALAGHDNTVCSVFTRP------  311 (485)
Q Consensus       244 wd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~------  311 (485)
                      ||+.+++  .+..+.+|...|.+++|+|+  ++++++|+.||.|++||++++  .....+.+|...|.++.|+|      
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9999987  77888899999999999999  999999999999999999877  34556678999999999999      


Q ss_pred             -------CCCEEEEEeCCCCEEEEECCCC----eEEeEeccCCCceEEEEECCC---CCEEEEEcCCC-EEEEECCCCce
Q 011457          312 -------TDPQVVTGSHDSTIKFWDLRYG----KTMLTLTHHKKSVRAMALHPT---EDCFASASAEN-IKKFNLPKGEF  376 (485)
Q Consensus       312 -------~~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~l~~~p~---~~~l~~~~~~~-i~i~d~~~~~~  376 (485)
                             ++.+|++|+.||.|++||++++    .....+..|...|.+++|+|+   +.++++++.++ |++||+.++..
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                   5899999999999999999887    566778889999999999999   89999999887 99999988742


Q ss_pred             e----eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457          377 L----HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       377 ~----~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~  418 (485)
                      .    ......+...+.+++|+|++ +|++|+.||.|++||+.++..
T Consensus       242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence            1    11123467889999999999 999999999999999986543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.3e-34  Score=288.47  Aligned_cols=273  Identities=18%  Similarity=0.231  Sum_probs=229.8

Q ss_pred             cccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------ceEEEEcc
Q 011457          144 STSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH-SNTWFCTGSADRTIKIWDVAKG-------TLKLTLTG  215 (485)
Q Consensus       144 ~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~  215 (485)
                      +++++.++.+.+|+........+.+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++       +....+.+
T Consensus        50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~  129 (402)
T 2aq5_A           50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG  129 (402)
T ss_dssp             EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred             EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence            445667778888876443223345566789999999999999 9999999999999999999988       66788999


Q ss_pred             cccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457          216 HIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       216 h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      |...|.+++|+|++ .+|++++.||.|++||+++++.+..+  ..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence            99999999999998 69999999999999999999999999  8899999999999999999999999999999999999


Q ss_pred             eEEEe-ccCCcc-EEEEEEcCCCCEEEEE---eCCCCEEEEECCCCeE-EeEe-ccCCCceEEEEECCCCCEEEE-EcCC
Q 011457          293 QIFAL-AGHDNT-VCSVFTRPTDPQVVTG---SHDSTIKFWDLRYGKT-MLTL-THHKKSVRAMALHPTEDCFAS-ASAE  364 (485)
Q Consensus       293 ~~~~~-~~~~~~-v~~l~~~~~~~~l~s~---s~dg~I~iwd~~~~~~-~~~~-~~~~~~v~~l~~~p~~~~l~~-~~~~  364 (485)
                      .+..+ .+|.+. +.++.|+|++.+|++|   +.|+.|++||+++++. +... ..+...+.+++|+|++.++++ ++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d  289 (402)
T 2aq5_A          210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD  289 (402)
T ss_dssp             EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred             eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence            99888 678776 8999999999999999   7999999999998664 2222 246678999999999998864 5445


Q ss_pred             C-EEEEECCCCce-eeeecc-CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457          365 N-IKKFNLPKGEF-LHNMLS-QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       365 ~-i~i~d~~~~~~-~~~~~~-~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~  418 (485)
                      + |++|++.+++. +..+.. .+...+.+++|+|++ ++++  .++.+++|++.++..
T Consensus       290 g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          290 SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             CeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            5 99999998874 333221 256889999999999 5543  567999999987643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.2e-34  Score=276.72  Aligned_cols=279  Identities=11%  Similarity=0.068  Sum_probs=242.9

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEEC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDV  204 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~  204 (485)
                      .+|.+.|.++.+++++.++++++.+..+.+|...... +......+.+|.+.|++++|+|+++ +|++|+.||.|++||+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            3688999999999999999999999999999865432 2234556679999999999999999 9999999999999999


Q ss_pred             -CCCceEEEEcc--cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeeEEEecccCCceEEEEEecCCC
Q 011457          205 -AKGTLKLTLTG--HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ---------NKVIRSYHGHLSGVYCLGLHPTID  272 (485)
Q Consensus       205 -~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~  272 (485)
                       .+++. ..+.+  |...|.+++|+| +.+|++++.|+.|++||+.+         ++++..+. |...|.+++|++++ 
T Consensus        87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-  162 (342)
T ss_dssp             SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred             ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence             77755 67888  999999999999 99999999999999999987         77777776 88999999999986 


Q ss_pred             EEEEEECCCcEEEEECCC-Cc--eEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCC------eEEeEeccC
Q 011457          273 ILLTGGRDSVCRVWDIRT-KM--QIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYG------KTMLTLTHH  342 (485)
Q Consensus       273 ~l~sg~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~------~~~~~~~~~  342 (485)
                       +++++.|+.|++||+++ +.  .......|...+.+++|+| ++.++++++.||.|++||++..      +....+..|
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence             99999999999999998 54  3344556888999999999 9999999999999999999887      777777777


Q ss_pred             CC---------ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCc-EEE
Q 011457          343 KK---------SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGS-LWF  410 (485)
Q Consensus       343 ~~---------~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~-I~i  410 (485)
                      ..         .|.+++|+|++.+|++++.++ |++||+.+++.+..+..+|...|.+++  +++ +|++++.||. .+.
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~  319 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence            55         999999999999999998886 999999999988886544488999999  777 9999999998 554


Q ss_pred             Ee
Q 011457          411 WD  412 (485)
Q Consensus       411 wd  412 (485)
                      |.
T Consensus       320 ~~  321 (342)
T 1yfq_A          320 AA  321 (342)
T ss_dssp             SS
T ss_pred             cc
Confidence            44

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.5e-34  Score=277.84  Aligned_cols=292  Identities=13%  Similarity=0.139  Sum_probs=224.0

Q ss_pred             ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEE-EEEeCCCcEEEE
Q 011457          166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM-FSAGDDKQVKCW  244 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~iw  244 (485)
                      +++..+.+|.+.|++++|+|+|++|++|+.|+ ++|||+.+++.......  ..+..+++.++++++ ++++.|++|++|
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            34456678999999999999999999998775 78999988776655442  357788899888877 467788999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC-ceEEEeccCCccEEEEEEcCCCCEEEE--EeC
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK-MQIFALAGHDNTVCSVFTRPTDPQVVT--GSH  321 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s--~s~  321 (485)
                      |+.+++.+..+. +...|.++.|+++.  ++++ .|+.|++||+.++ +.+..+..   ....+++++  .++++  |+.
T Consensus        87 d~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~  157 (355)
T 3vu4_A           87 DDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFN  157 (355)
T ss_dssp             ETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSC
T ss_pred             ECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCc
Confidence            999999999887 77899999999863  4444 4789999999988 66655554   444455666  56665  589


Q ss_pred             CCCEEEEECCCCe----------------EEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC
Q 011457          322 DSTIKFWDLRYGK----------------TMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ  383 (485)
Q Consensus       322 dg~I~iwd~~~~~----------------~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~  383 (485)
                      ||.|++||+++++                .+..+.+|...|.+++|+|++.+|++++.|+  |++||+.+++.+..+..+
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            9999999999865                2678899999999999999999999999886  999999999999888644


Q ss_pred             -CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccce--eeeccC-------------CCCCCccEEEEEEccCC
Q 011457          384 -QKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQ--TIVQPG-------------SLDSEAGIYALSYDVTG  446 (485)
Q Consensus       384 -~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~~-------------~~~~~~~V~~l~~s~~g  446 (485)
                       |...|.+++|+|++ +|++++.||.|++||+..+.......  ....+.             ..........++|+++|
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~  317 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES  317 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence             88999999999999 99999999999999998654211100  000000             00112234668999999


Q ss_pred             CEEEEEECCCcEEEecCCCCCCC
Q 011457          447 SRLVTCEADKTIKMWREDETATP  469 (485)
Q Consensus       447 ~~L~s~~~Dg~I~iW~~~~~~~~  469 (485)
                      ++|++++.||.+++|++..+...
T Consensus       318 ~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          318 SLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             EEEEEETTTTEEEEEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEEEEcCCCC
Confidence            99999999999999998765543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=289.99  Aligned_cols=300  Identities=9%  Similarity=0.052  Sum_probs=236.0

Q ss_pred             CCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457          128 KSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG  207 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~  207 (485)
                      -...+.+++++|+|.+++|++.|.+++.   +.      ....+.+|.+.|.+++|+|+|       .++.+.+|+.+. 
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~d---~~------~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~-   76 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIGQ---PK------YAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ-   76 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEEE---EC------CCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS-
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceeec---cc------ccceecCCCccEEEEEECCCC-------CcceEEEEeCCC-
Confidence            4466788899999999999999999982   21      112347999999999999999       566666665432 


Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCC-----ceEEEEEecCCCEEEEEECCCc
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLS-----GVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      .....+ .|...|.+++|+|+|.+|++++.||.|++||.++  ++..+. |..     .|.+++|+|+|++|++|+.||+
T Consensus        77 ~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt  152 (588)
T 2j04_A           77 NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE  152 (588)
T ss_dssp             SCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred             ceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence            222222 4688999999999999999999999999999654  677777 665     4999999999999999999999


Q ss_pred             EEEEECCCCce-------EEEe----ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE---EeEe-ccCCCceE
Q 011457          283 CRVWDIRTKMQ-------IFAL----AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT---MLTL-THHKKSVR  347 (485)
Q Consensus       283 i~iwd~~~~~~-------~~~~----~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~---~~~~-~~~~~~v~  347 (485)
                      |++||+.++..       +..+    .+|...|.+++|+|++  +++++.|++|++||+..++.   ..++ .+|...|.
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~  230 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT  230 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence            99999998853       5666    6788899999999999  88899999999999988773   3456 47788999


Q ss_pred             EEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEe--CCCC-eEEEEeCCCcEEEEeCCC------Ccc
Q 011457          348 AMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAV--NEEG-VLATGGDNGSLWFWDWKS------GHN  418 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~-~l~sg~~dg~I~iwd~~~------~~~  418 (485)
                      +++|+  +..+++++++.|++||+.+++...... +|...+..+.+  ++++ .+++++.||+ ++|....      +..
T Consensus       231 svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l  306 (588)
T 2j04_A          231 DLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNII  306 (588)
T ss_dssp             CEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSS
T ss_pred             EEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceE
Confidence            99999  689999987669999999887744333 68899999999  9999 8899999999 9998742      111


Q ss_pred             ccc-------ceee-eccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          419 FQQ-------AQTI-VQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       419 ~~~-------~~~~-~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      ...       .... .....+.+...|++++|+|||+.+|+++.
T Consensus       307 ~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          307 APYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            000       0000 00112334556999999999999998874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-35  Score=302.07  Aligned_cols=284  Identities=11%  Similarity=0.036  Sum_probs=225.1

Q ss_pred             CCCcceeecccCCC------CcccccccccCCCCCCCCCCCCC-------CcceEEEEecCCcceEEEEEccCCCEEEEE
Q 011457          127 GKSSAIVSTSASSE------RNLSTSAIMERIPSKWPRPEWHA-------PWKCYRVISGHLGWVRSVAFDHSNTWFCTG  193 (485)
Q Consensus       127 ~~~~~i~~~~~~~~------~~~~~t~~~~~~~~~w~~~~~~~-------~~~~~~~l~~H~~~V~~l~~sp~~~~l~tg  193 (485)
                      +|.+.|..+.++|+      +.++++++.|+.+++|.......       ..++...+.+|.+.|++++|++++ .|++|
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg  283 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG  283 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence            35667888888886      57899999999999998764321       123456788999999999999864 89999


Q ss_pred             eCCCeEEEEECCCCc-eEEEEcccccCEEEE--EEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEecccCC--ceEEEEE
Q 011457          194 SADRTIKIWDVAKGT-LKLTLTGHIEQVRGL--AVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLS--GVYCLGL  267 (485)
Q Consensus       194 s~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l--~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~--~v~~l~~  267 (485)
                      +.||+|++||+.++. ....+.+|...|.++  +|++++ .+|++|+.|++|+|||+++++++..+.+|..  .|.+++|
T Consensus       284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence            999999999998764 456688999999999  578887 8999999999999999999887777766654  5889999


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-----C
Q 011457          268 HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-----H  342 (485)
Q Consensus       268 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~  342 (485)
                      +|+++.|++++.|++|++||++++.++..+.+|.+.|.+++|+|++++|++|+.||+|++||+..+ .+..+..     +
T Consensus       364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~  442 (524)
T 2j04_B          364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQK  442 (524)
T ss_dssp             ETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CC
T ss_pred             CCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcccee
Confidence            999999999999999999999999988889999999999999999999999999999999998653 2222111     1


Q ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEECC-CCceeeeeccCCcccEEEEEeCCCC----eEEEEeCCCcEEEEeCCC
Q 011457          343 KKSVRAMALHPTEDCFASASAENIKKFNLP-KGEFLHNMLSQQKTIINSMAVNEEG----VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       343 ~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~----~l~sg~~dg~I~iwd~~~  415 (485)
                      ...+.+++|+|++..+..  .+...+|+.. ++..+.. +.+|...|.+++|+|++    .+++|+.+|.|+||++.-
T Consensus       443 ~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~-l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          443 SLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAK-IDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCEEEECBCCSSSCEEEE--CCCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             eeEEEEeccCCCCCeEEc--cCCceecccccCCcceee-ecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            124779999999986633  3333344332 3444444 46778899999999995    799999999999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.8e-32  Score=275.11  Aligned_cols=305  Identities=13%  Similarity=0.102  Sum_probs=250.1

Q ss_pred             ccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-----EEcccccCEE
Q 011457          147 AIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVR  221 (485)
Q Consensus       147 ~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~V~  221 (485)
                      +..+....+|........++.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++...     .+.+|...|.
T Consensus        95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~  173 (433)
T 3bws_A           95 KPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE  173 (433)
T ss_dssp             SGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred             ccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence            33444445554333223456667776654 45699999988888888889999999999998887     3457888999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEEEeccC
Q 011457          222 GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAGH  300 (485)
Q Consensus       222 ~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~  300 (485)
                      +++|++++.++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++ .|+.|++||+++++.+..+.. 
T Consensus       174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-  252 (433)
T 3bws_A          174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-  252 (433)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-
T ss_pred             EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-
Confidence            999999999999999999999999999999999988999999999999999885554 799999999999988888775 


Q ss_pred             CccEEEEEEcCCCCEEEEEe--------CCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEE-EEEcCCC-EEEEE
Q 011457          301 DNTVCSVFTRPTDPQVVTGS--------HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF-ASASAEN-IKKFN  370 (485)
Q Consensus       301 ~~~v~~l~~~~~~~~l~s~s--------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l-~~~~~~~-i~i~d  370 (485)
                      ...+.+++|+|+++++++++        .||.|++||+++++.+..+. +...+.+++|+|++..+ ++++.++ +.+||
T Consensus       253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d  331 (433)
T 3bws_A          253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYD  331 (433)
T ss_dssp             CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence            45699999999999999888        58899999999988777653 45578999999999755 5546665 99999


Q ss_pred             CCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC---------------CCcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457          371 LPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD---------------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSE  434 (485)
Q Consensus       371 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  434 (485)
                      +.+++....+.  +...+.+++|++++ ++++++.               ||.|++||+.+++....+.         ..
T Consensus       332 ~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~---------~~  400 (433)
T 3bws_A          332 LKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE---------AG  400 (433)
T ss_dssp             TTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE---------CS
T ss_pred             CCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec---------CC
Confidence            99988877653  55678999999999 7777766               5799999999887665543         23


Q ss_pred             ccEEEEEEccCCCEEEEEEC-CCcEEEecCCC
Q 011457          435 AGIYALSYDVTGSRLVTCEA-DKTIKMWREDE  465 (485)
Q Consensus       435 ~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~~  465 (485)
                      ..+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       401 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          401 NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            46899999999999998885 99999999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-34  Score=277.77  Aligned_cols=266  Identities=10%  Similarity=0.055  Sum_probs=219.3

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCeeEE
Q 011457          183 FDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE---------QNKVIR  253 (485)
Q Consensus       183 ~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~---------~~~~~~  253 (485)
                      +.+++.+|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.++
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            44578899999999999999999999888876  567888889988   9999999999999665         555455


Q ss_pred             Eec-ccCCceEEEEEec--CCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          254 SYH-GHLSGVYCLGLHP--TIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       254 ~~~-~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                      .+. +|...|.+++|+|  ++++|++++.||.|++||+++++.+.... .+...+.+++|+|++.+|++|+.||.|++||
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            553 6778999999999  99999999999999999999999877664 4556899999999999999999999999999


Q ss_pred             CCCCeEE-eEecc-CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc--CCcccE--EEEEeCCCC-eEEEE
Q 011457          330 LRYGKTM-LTLTH-HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS--QQKTII--NSMAVNEEG-VLATG  402 (485)
Q Consensus       330 ~~~~~~~-~~~~~-~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~i--~~~~~~~~~-~l~sg  402 (485)
                      +++++.+ ..+.. |...|.+++|+|++.+|++++++.|++||+++++.+..+..  .+...+  .+++|+|++ +|+++
T Consensus       199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  278 (343)
T 3lrv_A          199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY  278 (343)
T ss_dssp             SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred             CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence            9999887 77887 99999999999999999999977899999999876654422  122223  469999999 88888


Q ss_pred             eC-CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc---CCCEEEEEECCCcEEEecCCC
Q 011457          403 GD-NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV---TGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       403 ~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~---~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      +. |+.|++|++..+......            ..+..++|.+   ++..|++++.||.+.++-...
T Consensus       279 s~~d~~i~v~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          279 SNESNSLTIYKFDKKTKNWTK------------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             ETTTTEEEEEEECTTTCSEEE------------EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             cCCCCcEEEEEEcccccceEe------------cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            88 999999999765432221            3477888888   889999999999999885443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.5e-33  Score=279.93  Aligned_cols=257  Identities=18%  Similarity=0.281  Sum_probs=214.1

Q ss_pred             EEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CeeEEEecccCCceEEEEEecCCC-EEEEEE
Q 011457          211 LTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDLEQ----------NKVIRSYHGHLSGVYCLGLHPTID-ILLTGG  278 (485)
Q Consensus       211 ~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~  278 (485)
                      .....|.+.|++++|+|+ +.+|++++.||.|++||+.+          .+.+..+.+|...|++++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445679999999999997 68999999999999999987          577888899999999999999988 999999


Q ss_pred             CCCcEEEEECCCCce-------EEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCC---eEEeEeccCCCceE
Q 011457          279 RDSVCRVWDIRTKMQ-------IFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYG---KTMLTLTHHKKSVR  347 (485)
Q Consensus       279 ~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~  347 (485)
                      .||.|++||+.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987432       456678999999999999 6789999999999999999987   56777888999999


Q ss_pred             EEEECCCCC-EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccce
Q 011457          348 AMALHPTED-CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       348 ~l~~~p~~~-~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      +++|+|++. +|++++.++ |++||+++..........|...|.++.|+|++  +|++++.||.|++||+..........
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            999999987 688888877 99999998543333345678899999999988  69999999999999998733211000


Q ss_pred             ------eeeccCCCCCCccEEEEEEccCCC-EEEEEECCCcEEEecCCCCC
Q 011457          424 ------TIVQPGSLDSEAGIYALSYDVTGS-RLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       424 ------~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~~Dg~I~iW~~~~~~  467 (485)
                            .........|...|++++|+|+++ +|++++.||.|+||++....
T Consensus       362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence                  000001235778899999999999 99999999999999997643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=287.57  Aligned_cols=263  Identities=12%  Similarity=0.106  Sum_probs=214.8

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI  252 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~  252 (485)
                      .-..+|.+|+|+|||+++||++.|++|+  |...++   .+.+|...|.+++|+|+|       .++.+.+|+.+... +
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~   79 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L   79 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence            4568999999999999999999999999  755554   447999999999999998       56666666544222 2


Q ss_pred             EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc-----cEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          253 RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN-----TVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                      ..+ .|...|.+++|+|+|..|++++.||.|++||...  ++..+. |..     .+.+++|+|+|++|++|+.||+|++
T Consensus        80 ~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           80 LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            222 4688999999999999999999999999999654  666666 665     4999999999999999999999999


Q ss_pred             EECCCCe-------EEeEe----ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCcee---eeeccCCcccEEEEEe
Q 011457          328 WDLRYGK-------TMLTL----THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFL---HNMLSQQKTIINSMAV  393 (485)
Q Consensus       328 wd~~~~~-------~~~~~----~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~  393 (485)
                      ||+..++       .+.++    .+|...|.+++|+|+| +++++.++.+++|++..+...   ..+..+|...|.+++|
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            9999875       35665    5677899999999999 555555445999999887742   3343467788999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE--ccCCCEEEEEECCCcEEEecCC
Q 011457          394 NEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY--DVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       394 ~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      + ++.|++++ +|.|++||+.+++.....        .+|...|..+.|  +|++..|++++.||+ ++|..+
T Consensus       235 s-g~~LASa~-~~tIkLWd~~~~~~~~~~--------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          235 V-DYKVVLTC-PGYVHKIDLKNYSISSLK--------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             E-TTEEEEEC-SSEEEEEETTTTEEEEEE--------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             E-CCEEEEEe-CCeEEEEECCCCeEEEEE--------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            9 55888887 699999999887653221        257888999999  999999999999999 999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8e-32  Score=258.39  Aligned_cols=272  Identities=18%  Similarity=0.314  Sum_probs=230.0

Q ss_pred             cccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe--cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q 011457          135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS--GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT  212 (485)
Q Consensus       135 ~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~--~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~  212 (485)
                      +++|+++ +++. +.|+.+++|+...    .++.+.+.  +|...|++++|+|++++|++|+.||+|++||+.+++.+..
T Consensus        31 l~WS~~~-~lAv-g~D~tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           31 VDWSSGN-VLAV-ALDNSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             EEECTTS-EEEE-EETTEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEECCCC-EEEE-EeCCEEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            3466554 5555 4699999997643    45566554  7888999999999999999999999999999999999999


Q ss_pred             EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK  291 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  291 (485)
                      +.+|...+.++.+  ++.++++++.++.+++|+.... ..+..+.+|...+.++.+++++++|++++.||.|++||++++
T Consensus       105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          105 MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            9999998887665  5678999999999999998876 556778899999999999999999999999999999999876


Q ss_pred             ce----EEEeccCCccEEEEEEcCCCCEE---EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc--
Q 011457          292 MQ----IFALAGHDNTVCSVFTRPTDPQV---VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS--  362 (485)
Q Consensus       292 ~~----~~~~~~~~~~v~~l~~~~~~~~l---~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--  362 (485)
                      +.    ......+...|.++.+++++..+   ++++.++.|++||........... +...+..+.|+|++..+++++  
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECT
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEc
Confidence            53    34556788899999999976643   466788999999999887766554 566799999999999887654  


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      .++ |++||+.+++.+..+ .+|...|.+++|+|++ +|++|+.||+|+|||+...
T Consensus       262 ~d~~i~iwd~~~~~~~~~l-~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          262 AQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            444 999999999998886 5788999999999999 9999999999999998764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-32  Score=275.99  Aligned_cols=247  Identities=21%  Similarity=0.372  Sum_probs=216.8

Q ss_pred             EEEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCC----------CceEEEEcccccCEEEEEEcCCCC-EEEEEe
Q 011457          169 RVISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAK----------GTLKLTLTGHIEQVRGLAVSSKHT-YMFSAG  236 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~----------~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~  236 (485)
                      ..+.+|.+.|++++|+|+ +.+|++++.||.|++||+.+          ......+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445689999999999997 78999999999999999986          677888999999999999999988 999999


Q ss_pred             CCCcEEEEECCCCee-------EEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCC---ceEEEeccCCccEE
Q 011457          237 DDKQVKCWDLEQNKV-------IRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTK---MQIFALAGHDNTVC  305 (485)
Q Consensus       237 ~dg~V~iwd~~~~~~-------~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v~  305 (485)
                      .||.|++||+..+..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987422       456778999999999999 6789999999999999999987   57778888999999


Q ss_pred             EEEEcCCCC-EEEEEeCCCCEEEEECCC-CeEEeEeccCCCceEEEEECCCCC-EEEEEcCCC-EEEEECCCC-------
Q 011457          306 SVFTRPTDP-QVVTGSHDSTIKFWDLRY-GKTMLTLTHHKKSVRAMALHPTED-CFASASAEN-IKKFNLPKG-------  374 (485)
Q Consensus       306 ~l~~~~~~~-~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~~~~-i~i~d~~~~-------  374 (485)
                      +++|+|++. +|++|+.||.|++||++. ...+..+..|...|.+++|+|++. +|++++.++ |++||+...       
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            999999887 688999999999999998 567888888999999999999985 677777766 999999872       


Q ss_pred             -------ceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCC
Q 011457          375 -------EFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       375 -------~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~  416 (485)
                             ..+. ....|...|.++.|+|++  +|++++.||.|++|++...
T Consensus       362 ~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          362 DAEDGPPELLF-IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHCCTTEEE-ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccCCcceEE-EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                   3333 346678889999999998  7899999999999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=294.54  Aligned_cols=255  Identities=18%  Similarity=0.283  Sum_probs=216.3

Q ss_pred             EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEecccCCceEEEEEecC--CCEEEEEECCCcEEE
Q 011457          210 KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE--QNKVIRSYHGHLSGVYCLGLHPT--IDILLTGGRDSVCRV  285 (485)
Q Consensus       210 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~l~sg~~dg~i~i  285 (485)
                      +..+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|...|++++|+++  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            34678999999999999999999999999999999998  55778889999999999999988  899999999999999


Q ss_pred             EECCCCc--eEEEeccCCccEEEEEEcCC--CCEEEEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECC------
Q 011457          286 WDIRTKM--QIFALAGHDNTVCSVFTRPT--DPQVVTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHP------  353 (485)
Q Consensus       286 wd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p------  353 (485)
                      ||+++++  .+..+.+|...|.++.|+|+  +.++++|+.||.|++||++.+.  ....+..|...|.+++|+|      
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9999887  67788889999999999999  9999999999999999998873  4456678889999999999      


Q ss_pred             -------CCCEEEEEcCCC-EEEEECCCCce---eeeeccCCcccEEEEEeCCC---C-eEEEEeCCCcEEEEeCCCCcc
Q 011457          354 -------TEDCFASASAEN-IKKFNLPKGEF---LHNMLSQQKTIINSMAVNEE---G-VLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       354 -------~~~~l~~~~~~~-i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~-~l~sg~~dg~I~iwd~~~~~~  418 (485)
                             ++.++++++.++ |++||+.++..   .......|...|.+++|+|+   + +|++|+.||.|++||+.++..
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                   588899888877 99999987742   22234678889999999999   7 999999999999999988753


Q ss_pred             cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ......   .....+...|++++|+|+|++|++|+.||.|++|++....
T Consensus       242 ~~~~~~---~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          242 PWKKTL---LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CCBCCB---SSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             cceeEE---eccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            222111   1123467789999999999999999999999999998543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.5e-32  Score=264.47  Aligned_cols=283  Identities=16%  Similarity=0.209  Sum_probs=238.2

Q ss_pred             CCCCCcceeecccCCC---CcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEE
Q 011457          125 ASGKSSAIVSTSASSE---RNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKI  201 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~---~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~i  201 (485)
                      ..+|...|.++.++++   +.++++++.|+.+.+|....  ........+.+|.+.|++++|+|++++|++|+.||.|++
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  112 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM  112 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT--TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC--CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence            4578999999999999   59999999999999998753  123444788899999999999999999999999999999


Q ss_pred             EECCCCceEEEEcccccCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC
Q 011457          202 WDVAKGTLKLTLTGHIEQVRGLAV--SSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR  279 (485)
Q Consensus       202 wd~~~~~~~~~~~~h~~~V~~l~~--s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~  279 (485)
                      ||+.+++... +..|...|.+++|  ++++.+|++++.||.|++||+++++.+..+..+ ..+.++.+.+  ..+++++.
T Consensus       113 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~  188 (368)
T 3mmy_A          113 WDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIY--PMAVVATA  188 (368)
T ss_dssp             EETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEEEET--TEEEEEEG
T ss_pred             EEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEEecC--CeeEEEeC
Confidence            9999988766 5669999999999  899999999999999999999999999988865 4677777765  58899999


Q ss_pred             CCcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCE----EEEEeCCCCEEEEECCCC---eEEeEeccCCC------
Q 011457          280 DSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQ----VVTGSHDSTIKFWDLRYG---KTMLTLTHHKK------  344 (485)
Q Consensus       280 dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~----l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~------  344 (485)
                      ++.+.+||++.........  .+...+.++.+.++...    +++++.||.|++||++..   ..+..+..|..      
T Consensus       189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (368)
T 3mmy_A          189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS  268 (368)
T ss_dssp             GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred             CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence            9999999998776544332  23445566666555443    999999999999999987   55667776665      


Q ss_pred             ------ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          345 ------SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       345 ------~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                            .|.+++|+|++.+|++++.++ |++||+.+++.+..+ ..+...|.+++|+|++ +|++++.|+..+.|++.
T Consensus       269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS-EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-cCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence                  799999999999999998887 999999999988775 5678899999999999 99999999866655544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=8.2e-31  Score=259.44  Aligned_cols=270  Identities=14%  Similarity=0.132  Sum_probs=225.2

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM-FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG  266 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~  266 (485)
                      .++++++.|+.|++||+.+++....+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            468889999999999999999999888764 58999999999987 567789999999999999999887554 899999


Q ss_pred             EecCCCEEEEEE-CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccCCC
Q 011457          267 LHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHHKK  344 (485)
Q Consensus       267 ~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~  344 (485)
                      |+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ .
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  158 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R  158 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence            999999876555 679999999999988887774 4578999999999977 67888999999999999988888765 4


Q ss_pred             ceEEEEECCCCCEE-EEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe---CCCcEEEEeCCCCcc
Q 011457          345 SVRAMALHPTEDCF-ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG---DNGSLWFWDWKSGHN  418 (485)
Q Consensus       345 ~v~~l~~~p~~~~l-~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~---~dg~I~iwd~~~~~~  418 (485)
                      .+.+++|+|++..+ ++++.++ |++||+.+++....+.  +...+.++++++++ +|++++   .++.|++||+.+++.
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~  236 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence            57999999999887 4555555 9999999998776653  34578899999999 777776   689999999998876


Q ss_pred             cccceeeeccCCCCCCccEEEEEEccCCCEE-EEEECCCcEEEecCCCCCCCCCC
Q 011457          419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRL-VTCEADKTIKMWREDETATPETH  472 (485)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L-~s~~~Dg~I~iW~~~~~~~~~~~  472 (485)
                      ...+..         ...+.+++|+|+|++| ++++.|+.|++||+.++......
T Consensus       237 ~~~~~~---------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          237 TARIPV---------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EEEEEC---------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEec---------CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            554432         2357899999999988 56678999999999876644433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.6e-32  Score=272.61  Aligned_cols=262  Identities=13%  Similarity=0.141  Sum_probs=185.8

Q ss_pred             EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-----EEcccccCEEEEEEcC--------CCCEEEEEeC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-----TLTGHIEQVRGLAVSS--------KHTYMFSAGD  237 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~V~~l~~s~--------~~~~l~s~~~  237 (485)
                      ...|.+.+....+.+++.+|++|+.|++|+|||+.+++...     .+.+|.+.|++++|+|        ++++|++|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            34566666667777788899999999999999998886543     3578999999999998        7899999999


Q ss_pred             CCcEEEEECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEE--------------------
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFA--------------------  296 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~--------------------  296 (485)
                      |++|+|||+.++..+..+..|...|.+++|+|++ ++|++|+.||+|++||+++++....                    
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            9999999999988888888899999999999987 4899999999999999988754332                    


Q ss_pred             -----eccCCccEEEEEEc-CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Q 011457          297 -----LAGHDNTVCSVFTR-PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFN  370 (485)
Q Consensus       297 -----~~~~~~~v~~l~~~-~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d  370 (485)
                           ..+|...+.++.|+ +++..|++++.|+++++||+..++....+..+...+..+.+.|+...+.           
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------  313 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS-----------  313 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC-----------
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc-----------
Confidence                 23577788888886 7999999999999999999999888888877777777777777643221           


Q ss_pred             CCCCceeeeeccCCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE
Q 011457          371 LPKGEFLHNMLSQQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR  448 (485)
Q Consensus       371 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  448 (485)
                                  .....+..+.+.+ ++ ++++|+.||.|++||+.+++......        .|...|++++|+|||++
T Consensus       314 ------------~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--------~~~~~V~svafspdG~~  373 (393)
T 4gq1_A          314 ------------LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--------QLGMPIVDFCWHQDGSH  373 (393)
T ss_dssp             ------------SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--------ECSSCEEEEEECTTSSE
T ss_pred             ------------ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--------CCCCcEEEEEEcCCCCE
Confidence                        1112222233333 34 67788899999999999987665443        36678999999999999


Q ss_pred             EEEEECCCcEEEecCC
Q 011457          449 LVTCEADKTIKMWRED  464 (485)
Q Consensus       449 L~s~~~Dg~I~iW~~~  464 (485)
                      ||+++.|| +.+|++.
T Consensus       374 LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          374 LAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEEESSE-EEEEEEG
T ss_pred             EEEEeCCC-eEEEEEe
Confidence            99998776 6566543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.7e-30  Score=257.06  Aligned_cols=315  Identities=14%  Similarity=0.082  Sum_probs=245.8

Q ss_pred             ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEcccccCEE
Q 011457          143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVR  221 (485)
Q Consensus       143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~  221 (485)
                      ++++++.+..+.+|+...    .++...+.+|.. +.+++|+|+++++ ++++.|+.|++||+.+++....+..+. .+.
T Consensus         4 l~vs~~~d~~v~v~d~~~----~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~   77 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTS----NKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ   77 (391)
T ss_dssp             EEEEETTTTEEEEEETTT----TEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred             EEEEcCCCCEEEEEECCC----CeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Ccc
Confidence            456677788888997643    567778877754 8999999999976 677789999999999999998888665 999


Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE-EEEECCCcEEEEECCCCceEEEecc
Q 011457          222 GLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL-LTGGRDSVCRVWDIRTKMQIFALAG  299 (485)
Q Consensus       222 ~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~  299 (485)
                      +++|+|++++|++++ .|+.|++||+.+++.+..+.. ...+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  156 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence            999999999886554 679999999999999888874 4578999999999977 6788899999999999998888875


Q ss_pred             CCccEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc---CCC-EEEEECCCC
Q 011457          300 HDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS---AEN-IKKFNLPKG  374 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---~~~-i~i~d~~~~  374 (485)
                      + ..+.+++|+|+++++ ++++.++.|++||+++++.+..+.. ...+.+++|+|++.++++++   .++ |.+||+.++
T Consensus       157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            5 557999999999987 5777889999999999988877764 55789999999999888886   344 999999999


Q ss_pred             ceeeeeccCCcccEEEEEeCCCC-eE-EEEeCCCcEEEEeCCCCcccccceeeeccCCC---------CCCccEEEEEEc
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEG-VL-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL---------DSEAGIYALSYD  443 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~-~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~V~~l~~s  443 (485)
                      +.+..+..+  ..+.++.+++++ +| ++++.|+.|++||+.+++....+.....+...         .+...+.....+
T Consensus       235 ~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~  312 (391)
T 1l0q_A          235 KITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSN  312 (391)
T ss_dssp             EEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEES
T ss_pred             eEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccc
Confidence            887766432  347899999999 55 67788999999999998876655432211100         000111111221


Q ss_pred             cC------C--CEEEEEECCCcEEEecCCCCCC
Q 011457          444 VT------G--SRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       444 ~~------g--~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      ..      .  -.|...+.|..+++|++.++..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          313 ITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS  345 (391)
T ss_dssp             CCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred             cccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence            11      1  3466667789999999987653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-31  Score=268.35  Aligned_cols=241  Identities=15%  Similarity=0.185  Sum_probs=206.4

Q ss_pred             ecCCcceEEEEEccCCCEE-EEEeCCCeEEEEECC--CCceEEEEc--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          172 SGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVA--KGTLKLTLT--GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~--~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      .+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++....+.  .|...|.+++|+|++++|++++.||.|++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4677899999999999996 899999999999999  888888776  56789999999999999999999999999999


Q ss_pred             CCCeeEE----EecccCCceEEEEEecC---CCEEEEEECCCcEEEEECCCCceEEE-eccCCccEEEEEEcCCCCEEEE
Q 011457          247 EQNKVIR----SYHGHLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       247 ~~~~~~~----~~~~h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      .+++...    .+.+|...|.+++|+|+   +++|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ ++.+|++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence            8877554    77889999999999999   99999999999999999999988887 55899999999999 9999999


Q ss_pred             EeCCCCEEEEECCCCeEEeEecc-------------------------CCCceEEEEECCCCCEEEEEc-CCC-EEEEEC
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLTH-------------------------HKKSVRAMALHPTEDCFASAS-AEN-IKKFNL  371 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~~-------------------------~~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~  371 (485)
                      ++.|+.|++||+++++.+..+..                         ....|.+++|+|++.++++++ .++ |++|++
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99999999999999998887752                         235789999999999999887 555 999999


Q ss_pred             --CCC---ceeeeeccCCcccEEEEEeCCCCeEEEEeC-------CCcEEEEeCCC
Q 011457          372 --PKG---EFLHNMLSQQKTIINSMAVNEEGVLATGGD-------NGSLWFWDWKS  415 (485)
Q Consensus       372 --~~~---~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~-------dg~I~iwd~~~  415 (485)
                        ..+   +.+..+. .+ ..+.+++|++++++++.+.       +..|.+|.+..
T Consensus       338 ~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          338 SEKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             CSSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             ccCCCCceeeccEec-cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence              555   4444443 34 7799999999775555543       45578887643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.6e-31  Score=257.79  Aligned_cols=264  Identities=9%  Similarity=0.010  Sum_probs=212.7

Q ss_pred             cccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC---------
Q 011457          135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA---------  205 (485)
Q Consensus       135 ~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~---------  205 (485)
                      .+...++.++++++.|+.+.+|+...    .+.+..+.  .+.|.++.|+|+   +++++.|++|++|+..         
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~----~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKD----SKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESS----SSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCC----CcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence            44556788899999999999998654    34445554  578889999988   9999999999999765         


Q ss_pred             CCceEEEEc-ccccCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCC
Q 011457          206 KGTLKLTLT-GHIEQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDS  281 (485)
Q Consensus       206 ~~~~~~~~~-~h~~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg  281 (485)
                      +++.+..+. +|...|.+++|+|  ++++|++++.||+|++||+++++.+..+. .|...|.+++|+|++.+|++|+.||
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            455444443 6778999999999  99999999999999999999999877664 4556899999999999999999999


Q ss_pred             cEEEEECCCCceE-EEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc---CCCceE--EEEECCC
Q 011457          282 VCRVWDIRTKMQI-FALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH---HKKSVR--AMALHPT  354 (485)
Q Consensus       282 ~i~iwd~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~v~--~l~~~p~  354 (485)
                      .|++||+++++.+ ..+.. |...|.+++|+|++.+|++++ |+.|++||+++++.+..+..   +...+.  +++|+|+
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9999999999988 78887 999999999999999999999 55999999999877655443   333343  6999999


Q ss_pred             CCEEEEEcC-CC-EEEEECCCCceeeeeccCCcccEEEEEeCC---CC-eEEEEeCCCcEEEEeC
Q 011457          355 EDCFASASA-EN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNE---EG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       355 ~~~l~~~~~-~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~l~sg~~dg~I~iwd~  413 (485)
                      +.+|++++. ++ +++|++.+.......     ..+..+.|.+   +. .+++++.||.+.++-.
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             CCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            999999776 55 999999766543332     4567778887   65 8899999999998753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=7.6e-30  Score=249.73  Aligned_cols=276  Identities=11%  Similarity=0.076  Sum_probs=218.3

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEE-EEEeCCCeEEEEEC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDV  204 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~  204 (485)
                      .+|...|.+++|++++.+++++..+. +++|...    +.+....  .+...+..+++.++++++ ++|+.|++|+|||+
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVH----PVAHIMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEET----TEEEEEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecC----Ccceeee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            45788899999999999999887665 5688643    2333333  233458889999988877 56778899999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEecccCCceEEEEEecCCCEEEE--EECCC
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGHLSGVYCLGLHPTIDILLT--GGRDS  281 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s--g~~dg  281 (485)
                      .+++.+..+. +...|.+++|+++.  ++++ .|+.|++||+.++ +.+..+..   ....+++++  .++++  |+.||
T Consensus        89 ~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           89 VKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred             CCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCc
Confidence            9999998887 67799999998764  4444 4789999999988 77666654   445566777  56666  58899


Q ss_pred             cEEEEECCCCc----------------eEEEeccCCccEEEEEEcCCCCEEEEEeCCCC-EEEEECCCCeEEeEec-c-C
Q 011457          282 VCRVWDIRTKM----------------QIFALAGHDNTVCSVFTRPTDPQVVTGSHDST-IKFWDLRYGKTMLTLT-H-H  342 (485)
Q Consensus       282 ~i~iwd~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-I~iwd~~~~~~~~~~~-~-~  342 (485)
                      .|++||++++.                .+..+.+|...|.+++|+|++.+|++|+.||+ |++||+++++.+..+. + |
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h  239 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD  239 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            99999999865                26788899999999999999999999999999 9999999999999998 4 8


Q ss_pred             CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee----------------------eccCCcccEEEEEeCCCC-e
Q 011457          343 KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN----------------------MLSQQKTIINSMAVNEEG-V  398 (485)
Q Consensus       343 ~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~----------------------~~~~~~~~i~~~~~~~~~-~  398 (485)
                      ...|.+++|+|++.+|++++.++ |++||+..+.....                      +..........++|++++ .
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~  319 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL  319 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE
Confidence            99999999999999999999988 99999976532111                      011112223668999999 9


Q ss_pred             EEEEeCCCcEEEEeCCCCc
Q 011457          399 LATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       399 l~sg~~dg~I~iwd~~~~~  417 (485)
                      |++++.||.+++|++..++
T Consensus       320 l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          320 VVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEEETTTTEEEEEEEEEET
T ss_pred             EEEEeCCCeEEEEEEEcCC
Confidence            9999999999999986544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=6.1e-29  Score=249.42  Aligned_cols=275  Identities=11%  Similarity=0.102  Sum_probs=233.5

Q ss_pred             eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEE-----EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 011457          132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYR-----VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK  206 (485)
Q Consensus       132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~-----~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~  206 (485)
                      +.++.+++++.+++++..+..+.+|+...    .+..+     .+.+|.+.|.+++|++++.++++++.|+.|++||+.+
T Consensus       125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          125 PKSVRFIDNTRLAIPLLEDEGMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             BCCCEESSSSEEEEEBTTSSSEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             ceEEEEeCCCeEEEEeCCCCeEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            44667888778888888888899997643    33444     4558999999999999999999999999999999999


Q ss_pred             CceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE-------
Q 011457          207 GTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-------  278 (485)
Q Consensus       207 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-------  278 (485)
                      ++....+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|+++.|++++       
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQE  279 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccc
Confidence            999999999999999999999999886554 7999999999999998888754 5699999999999999988       


Q ss_pred             -CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCC
Q 011457          279 -RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTED  356 (485)
Q Consensus       279 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~  356 (485)
                       .||.|++||+++++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+. +...+.+++|+|++.
T Consensus       280 ~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          280 SGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK  357 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS
T ss_pred             cCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC
Confidence             5889999999998877665 466789999999999755 566899999999999998887776 567799999999999


Q ss_pred             EEEEEcCC----------------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC-CCcEEEEeCCC
Q 011457          357 CFASASAE----------------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD-NGSLWFWDWKS  415 (485)
Q Consensus       357 ~l~~~~~~----------------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-dg~I~iwd~~~  415 (485)
                      ++++++.+                .|++||..+++.+..+..  ...+.+++|+|++ +|++++. |+.|++|++..
T Consensus       358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            88877653                499999999988877643  4568999999999 7777764 99999999763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.4e-31  Score=264.04  Aligned_cols=241  Identities=10%  Similarity=0.040  Sum_probs=183.1

Q ss_pred             eeecccCCCCcccccccccCCCCCCCCCCCCC-CcceEEEEecCCcceEEEEEcc--------CCCEEEEEeCCCeEEEE
Q 011457          132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHA-PWKCYRVISGHLGWVRSVAFDH--------SNTWFCTGSADRTIKIW  202 (485)
Q Consensus       132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp--------~~~~l~tgs~dg~I~iw  202 (485)
                      .....+++.+.++++++.|+.+++|....... ....+..+.||.+.|++|+|+|        ++++||+|+.|++|+||
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            33445666778899999999999997644221 2234456789999999999998        78999999999999999


Q ss_pred             ECCCCceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEE-------------------------ec
Q 011457          203 DVAKGTLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRS-------------------------YH  256 (485)
Q Consensus       203 d~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~-------------------------~~  256 (485)
                      |+.++.....+..|...|.+++|+|++. +|++++.||+|++||+.+++....                         ..
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            9999988888888999999999999874 799999999999999988764332                         23


Q ss_pred             ccCCceEEEEEe-cCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEc------------------C--CCCE
Q 011457          257 GHLSGVYCLGLH-PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR------------------P--TDPQ  315 (485)
Q Consensus       257 ~h~~~v~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~------------------~--~~~~  315 (485)
                      +|...|.++.|+ ++++.|++++.|+++++||+..+.....+..|...+..+.+.                  +  ++.+
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF  331 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred             cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence            577888999987 789999999999999999999887766666555544443332                  2  2335


Q ss_pred             EEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECC
Q 011457          316 VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLP  372 (485)
Q Consensus       316 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~  372 (485)
                      +++|+.||.|++||+.+++....+..|..+|++++|+|+|++|++++++++.+|.+.
T Consensus       332 ~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          332 ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence            677889999999999999988888889999999999999999999999999888764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.7e-28  Score=232.03  Aligned_cols=286  Identities=13%  Similarity=0.089  Sum_probs=200.0

Q ss_pred             cceEEEEecCCc----ceEEEEEccCCC---EEEEEeCCCeEEEEECCCC---ceEEEEcccccCEEEEEEcCCCCEEEE
Q 011457          165 WKCYRVISGHLG----WVRSVAFDHSNT---WFCTGSADRTIKIWDVAKG---TLKLTLTGHIEQVRGLAVSSKHTYMFS  234 (485)
Q Consensus       165 ~~~~~~l~~H~~----~V~~l~~sp~~~---~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s  234 (485)
                      .+++..|+.-.+    .+.++-|-..+.   .+++++. ..|++|+..++   ++.+++.+|..+|..+.+.|+..-|++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  103 (356)
T 2w18_A           25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC  103 (356)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred             eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence            345555554433    255666654333   5666665 68999999999   889999999999999988886543333


Q ss_pred             EeC----CCcEEEEECCCC----eeEEEecccCCceEEEEEecCCCEEEEEE--CCCcEEEEEC-CCCceEEEeccCCcc
Q 011457          235 AGD----DKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGG--RDSVCRVWDI-RTKMQIFALAGHDNT  303 (485)
Q Consensus       235 ~~~----dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~-~~~~~~~~~~~~~~~  303 (485)
                      ..-    .+.|+..-+...    .....-.+|...|..+   ++++++.+++  .|+.|++|++ .+++.+..+.+|...
T Consensus       104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~  180 (356)
T 2w18_A          104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE  180 (356)
T ss_dssp             EEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred             eeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence            221    011111111111    1111113344444443   5565555543  5999999999 457888888899999


Q ss_pred             EEEEEEcC---CCCEEEEEeCCCCEEEEECCCCeEEeEeccCC---CceEEEEECCCCCEEEE------------EcCCC
Q 011457          304 VCSVFTRP---TDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK---KSVRAMALHPTEDCFAS------------ASAEN  365 (485)
Q Consensus       304 v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---~~v~~l~~~p~~~~l~~------------~~~~~  365 (485)
                      +..++|++   ++.+|++++.|++|+|||+++++++.++..|.   ..+.+++|+|++.++++            ++.++
T Consensus       181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred             eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence            99999999   77999999999999999999999999997644   36778899999998744            55555


Q ss_pred             -EEEEECCCCceeeeec----cCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE-EE
Q 011457          366 -IKKFNLPKGEFLHNML----SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI-YA  439 (485)
Q Consensus       366 -i~i~d~~~~~~~~~~~----~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V-~~  439 (485)
                       +++||..+++.+..+.    .++...+.+..++ ..++++|+.||+|+|||+.+++.+..+.        +|...+ ..
T Consensus       261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~--------gH~~~vvs~  331 (356)
T 2w18_A          261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLP--------PVSDQHWSF  331 (356)
T ss_dssp             EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEEC--------CC--CCCCE
T ss_pred             EEEEEECCCCEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEec--------CCCCCeEEE
Confidence             9999999998776542    3444334444443 2288999999999999999999887764        244444 46


Q ss_pred             EEEccCCCEEEEEECCCcEEEecC
Q 011457          440 LSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       440 l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      ++|+|||++|++|+.|++|+||++
T Consensus       332 vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          332 VKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEecC
Confidence            899999999999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=9.8e-28  Score=247.35  Aligned_cols=328  Identities=10%  Similarity=0.025  Sum_probs=255.0

Q ss_pred             cCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC--CCCceEEEEc
Q 011457          137 ASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV--AKGTLKLTLT  214 (485)
Q Consensus       137 ~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~--~~~~~~~~~~  214 (485)
                      +++++.++++...+..+.+|+..    ..+++.++..+.. +.+++|+|+|++|++++.|+.|++||+  .+++.+.++.
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~----t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGD----SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETT----TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECC----CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            66778888888899999999653    4677888883333 899999999999999999999999999  8898888887


Q ss_pred             ccccCEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCeeEEEecc----------cC-CceEEEEEecCCC-EEEEE
Q 011457          215 GHIEQVRGLAVSS----KHTYMFSAGD-DKQVKCWDLEQNKVIRSYHG----------HL-SGVYCLGLHPTID-ILLTG  277 (485)
Q Consensus       215 ~h~~~V~~l~~s~----~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~~----------h~-~~v~~l~~~~~~~-~l~sg  277 (485)
                       +...+..++|+|    ++++|++++. +++|.+||..++++++.+..          |. ..+..+.++|++. ++++.
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence             445689999999    9999999884 89999999999999988864          22 3789999999766 55666


Q ss_pred             ECCCcEEEEECCCCceEE--EeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeEEeEecc----CCCceEEEE
Q 011457          278 GRDSVCRVWDIRTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKTMLTLTH----HKKSVRAMA  350 (485)
Q Consensus       278 ~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~----~~~~v~~l~  350 (485)
                      ..++.|.+||+.+.+.+.  .+ .+...+..+.|+|++++|++++ .+++|.+||+.+++.+..+..    |......+ 
T Consensus       299 ~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-  376 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-  376 (543)
T ss_dssp             TTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred             CCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence            778999999998866543  33 3566788999999999877655 588999999999999888764    43333333 


Q ss_pred             ECCC-CCEEEEEc-C-CCEEEEECCC-------CceeeeeccCCcccEEEEEeCCCC-eEEEEe-------CCCcEEEEe
Q 011457          351 LHPT-EDCFASAS-A-ENIKKFNLPK-------GEFLHNMLSQQKTIINSMAVNEEG-VLATGG-------DNGSLWFWD  412 (485)
Q Consensus       351 ~~p~-~~~l~~~~-~-~~i~i~d~~~-------~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-------~dg~I~iwd  412 (485)
                      ++|+ +.+++++. . +.|.+|+..+       ++.++.+ ..+...+..+.++|++ +|++++       .+++|.+||
T Consensus       377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence            4676 66667664 3 4499999988       7777776 4555667889999999 777776       267999999


Q ss_pred             CCCCccc-ccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-----CCCcEEEecCCCCCCCCCCC
Q 011457          413 WKSGHNF-QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-----ADKTIKMWREDETATPETHP  473 (485)
Q Consensus       413 ~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-----~Dg~I~iW~~~~~~~~~~~~  473 (485)
                      +.+++.. ..+......+...+...+..+.|+++|+.|+++.     .|+.|.|||..+.+...+.+
T Consensus       456 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          456 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             TTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            9998865 2221100011123466799999999999998763     47999999999887655544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.3e-28  Score=232.83  Aligned_cols=259  Identities=15%  Similarity=0.149  Sum_probs=190.8

Q ss_pred             ccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCC-EEEEEeCC---CeEEEEECCCC----ceEEEEcccccCE
Q 011457          149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNT-WFCTGSAD---RTIKIWDVAKG----TLKLTLTGHIEQV  220 (485)
Q Consensus       149 ~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~-~l~tgs~d---g~I~iwd~~~~----~~~~~~~~h~~~V  220 (485)
                      .+..+++|...+ ...|++++++.+|..+|..|.+.||-. +++++-.+   +.|+.--+...    .....-.+|...|
T Consensus        61 ~~~~v~lw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v  139 (356)
T 2w18_A           61 CEDVVSLWKALD-AWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAV  139 (356)
T ss_dssp             ESSEEEEEEESS-SSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEE
T ss_pred             ccceEEEcccCC-CccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEE
Confidence            466778897665 367899999999999999999998543 22222211   11111111111    1112223344444


Q ss_pred             EEEEEcCCCCEEEEEe--CCCcEEEEEC-CCCeeEEEecccCCceEEEEEec---CCCEEEEEECCCcEEEEECCCCceE
Q 011457          221 RGLAVSSKHTYMFSAG--DDKQVKCWDL-EQNKVIRSYHGHLSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRTKMQI  294 (485)
Q Consensus       221 ~~l~~s~~~~~l~s~~--~dg~V~iwd~-~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~~~~~  294 (485)
                      ..+   ++++++.+++  .|+.|++|++ .+++.+..+.+|...++.++|++   ++.+|++|+.|++|+|||+++++.+
T Consensus       140 ~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l  216 (356)
T 2w18_A          140 LGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL  216 (356)
T ss_dssp             EEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             Eec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence            443   5666666644  6999999999 55888888889999999999999   7799999999999999999999999


Q ss_pred             EEeccCC---ccEEEEEEcCCCCEE------------EEEeCCCCEEEEECCCCeEEeEe-----ccCCCceEEEEECCC
Q 011457          295 FALAGHD---NTVCSVFTRPTDPQV------------VTGSHDSTIKFWDLRYGKTMLTL-----THHKKSVRAMALHPT  354 (485)
Q Consensus       295 ~~~~~~~---~~v~~l~~~~~~~~l------------~s~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~  354 (485)
                      .++.+|.   ..+.+++|+|++.++            ++|+.|++|++||..+++.+..+     .+|...+.+..+  +
T Consensus       217 ~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--s  294 (356)
T 2w18_A          217 KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--K  294 (356)
T ss_dssp             EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--E
T ss_pred             EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--C
Confidence            9998654   367788999999876            56888999999999999987665     345444444444  3


Q ss_pred             CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          355 EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       355 ~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      +.++++++.|+ |++||+.+++.+..+..++...+.+++|+|+| +|++|+.|++|+|||+
T Consensus       295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            77899998776 99999999999998754445556679999999 9999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.3e-27  Score=235.85  Aligned_cols=278  Identities=13%  Similarity=0.080  Sum_probs=220.3

Q ss_pred             CcceEEEEEccCCC-EEEEEe----CCC----eEEEEEC--CCCceE--EEEcccccCEEEEEEcC--------------
Q 011457          175 LGWVRSVAFDHSNT-WFCTGS----ADR----TIKIWDV--AKGTLK--LTLTGHIEQVRGLAVSS--------------  227 (485)
Q Consensus       175 ~~~V~~l~~sp~~~-~l~tgs----~dg----~I~iwd~--~~~~~~--~~~~~h~~~V~~l~~s~--------------  227 (485)
                      ...|...+|.+.|. ++++|+    .||    .|+|||+  .+++.+  ..+.+|...+..+++++              
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            35677778888764 566776    467    8999999  888877  45888888888877764              


Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC---cEEEEECCCCceEEEec
Q 011457          228 KHTYMFSAGDD------KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS---VCRVWDIRTKMQIFALA  298 (485)
Q Consensus       228 ~~~~l~s~~~d------g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~  298 (485)
                      .+..++.++.+      +.|++||++. ...+.+.+|...+.+++|+|+|+.|++++.++   .|++||+.+++.. .+.
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~  219 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA  219 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence            15556665554      7999999974 55677778999999999999999999999885   9999999998765 566


Q ss_pred             cCCccEEEEEEcCCCCEEE-EEeCCCC--EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEEC
Q 011457          299 GHDNTVCSVFTRPTDPQVV-TGSHDST--IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNL  371 (485)
Q Consensus       299 ~~~~~v~~l~~~~~~~~l~-s~s~dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~  371 (485)
                      .|...+.+++|+|++++|+ +++.++.  |++||+.+++. ..+..+...+.+++|+|+|++|+.++.+    .|++||+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence            6888999999999999887 6666665  99999998776 5677778889999999999988887753    2888899


Q ss_pred             CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC---CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC
Q 011457          372 PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN---GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS  447 (485)
Q Consensus       372 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  447 (485)
                      .+++...  ...+...+..+.|+|+| +|++++.+   +.|++||+.+++... +.        .+ ..+.+++|+|+|+
T Consensus       299 ~~~~~~~--l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~--------~~-~~~~~~~~spdg~  366 (415)
T 2hqs_A          299 NGGAPQR--ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS--------ST-FLDETPSLAPNGT  366 (415)
T ss_dssp             TSSCCEE--CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC--------CS-SSCEEEEECTTSS
T ss_pred             CCCCEEE--EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec--------CC-CCcCCeEEcCCCC
Confidence            8876432  23455678899999999 77776654   589999999876532 11        12 2689999999999


Q ss_pred             EEEEEECCC---cEEEecCCCCC
Q 011457          448 RLVTCEADK---TIKMWREDETA  467 (485)
Q Consensus       448 ~L~s~~~Dg---~I~iW~~~~~~  467 (485)
                      +|++++.|+   .|++|+++...
T Consensus       367 ~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          367 MVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCC
T ss_pred             EEEEEEcCCCccEEEEEECCCCc
Confidence            999998887   79999987554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.2e-25  Score=231.75  Aligned_cols=276  Identities=11%  Similarity=0.111  Sum_probs=220.7

Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeeEEEecccC
Q 011457          182 AFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL--EQNKVIRSYHGHL  259 (485)
Q Consensus       182 ~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~--~~~~~~~~~~~h~  259 (485)
                      +|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.|+.|++||+  .+++++..+. +.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence            3789999999999999999999999999999884333 899999999999999999999999999  8899999887 55


Q ss_pred             CceEEEEEec----CCCEEEEEEC-CCcEEEEECCCCceEEEeccC-----------CccEEEEEEcCCCCE-EEEEeCC
Q 011457          260 SGVYCLGLHP----TIDILLTGGR-DSVCRVWDIRTKMQIFALAGH-----------DNTVCSVFTRPTDPQ-VVTGSHD  322 (485)
Q Consensus       260 ~~v~~l~~~~----~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~l~~~~~~~~-l~s~s~d  322 (485)
                      ..+..++|+|    +|++|++++. +++|.+||..+++++..+..+           ...+.++.++++++. +++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            6789999999    9999999885 899999999999998887642           237899999997765 4566778


Q ss_pred             CCEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcC--CCEEEEECCCCceeeeeccC---CcccEEEEEeCC
Q 011457          323 STIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFLHNMLSQ---QKTIINSMAVNE  395 (485)
Q Consensus       323 g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~  395 (485)
                      +.|.+||+.+.+.+.  .+. +...+.++.|+|++++|++++.  +.|.+||..+++.+..+..+   |......+ ++|
T Consensus       302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p  379 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP  379 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred             CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence            999999998765443  333 4566889999999998765543  34999999999988776432   33222333 466


Q ss_pred             C-C-eEEEEe-CCCcEEEEeCCC-------CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-------CCCcE
Q 011457          396 E-G-VLATGG-DNGSLWFWDWKS-------GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-------ADKTI  458 (485)
Q Consensus       396 ~-~-~l~sg~-~dg~I~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-------~Dg~I  458 (485)
                      + + +++++. .|++|.+||+.+       .+.++.+.        .+...+..+.|+|+|++|++++       .+++|
T Consensus       380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~--------~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v  451 (543)
T 1nir_A          380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ--------GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV  451 (543)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--------CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred             CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE--------cCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence            6 5 666665 689999999988       44444433        2445677899999999999987       37899


Q ss_pred             EEecCCCCCCC
Q 011457          459 KMWREDETATP  469 (485)
Q Consensus       459 ~iW~~~~~~~~  469 (485)
                      .|||+.+....
T Consensus       452 ~v~d~~~~~~~  462 (543)
T 1nir_A          452 AVFDLKNLDAK  462 (543)
T ss_dssp             EEEETTCTTSC
T ss_pred             EEEECCCCCCC
Confidence            99999987755

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1e-25  Score=225.11  Aligned_cols=276  Identities=9%  Similarity=0.030  Sum_probs=218.0

Q ss_pred             CCCCCCC--CCCCCCcceE--EEEecCCcceEEEEEcc--------------CCCEEEEEeCC------CeEEEEECCCC
Q 011457          152 IPSKWPR--PEWHAPWKCY--RVISGHLGWVRSVAFDH--------------SNTWFCTGSAD------RTIKIWDVAKG  207 (485)
Q Consensus       152 ~~~~w~~--~~~~~~~~~~--~~l~~H~~~V~~l~~sp--------------~~~~l~tgs~d------g~I~iwd~~~~  207 (485)
                      .+++|+.  ..    .+.+  ..+.+|...++.+++++              .+..++.++.+      +.|++||+. +
T Consensus        94 ~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g  168 (415)
T 2hqs_A           94 AYQLVDTGGAP----GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-G  168 (415)
T ss_dssp             EEEEEECSSST----TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-S
T ss_pred             EEEEEeCCCCC----CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-C
Confidence            6788876  43    2233  56889999999888875              15566666654      799999997 4


Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE-EEECCCc-
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK---QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL-TGGRDSV-  282 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sg~~dg~-  282 (485)
                      .....+.+|...|.+++|+|++++|++++.|+   .|++||+.+++.. .+..|...+.+++|+|+|+.|+ +++.|+. 
T Consensus       169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~  247 (415)
T 2hqs_A          169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSL  247 (415)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence            55677888999999999999999999999875   9999999998875 4566888999999999999877 6666655 


Q ss_pred             -EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC--CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEE
Q 011457          283 -CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS--TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCF  358 (485)
Q Consensus       283 -i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l  358 (485)
                       |++||+.+++. ..+..|...+.++.|+|++++|++++. ++  .|.+||+.+++. ..+..+...+.+++|+|+|++|
T Consensus       248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l  325 (415)
T 2hqs_A          248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM  325 (415)
T ss_dssp             EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred             eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEE
Confidence             99999998765 567778889999999999999998886 45  677789887764 4455566788999999999999


Q ss_pred             EEEcCC----CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC---cEEEEeCCCCcccccceeeeccCC
Q 011457          359 ASASAE----NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG---SLWFWDWKSGHNFQQAQTIVQPGS  430 (485)
Q Consensus       359 ~~~~~~----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~  430 (485)
                      ++++.+    .|.+||+.+++.. .+ ..+. .+.+++|+|++ +|++++.++   .|++||+..+. ...+.       
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~~~~-~l-~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~-------  394 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATGGVQ-VL-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP-------  394 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEE-EC-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-------
T ss_pred             EEEECcCCceEEEEEECCCCCEE-Ee-cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEee-------
Confidence            888754    3999999988764 33 2333 78999999999 777777766   79999987443 33332       


Q ss_pred             CCCCccEEEEEEccCCC
Q 011457          431 LDSEAGIYALSYDVTGS  447 (485)
Q Consensus       431 ~~~~~~V~~l~~s~~g~  447 (485)
                       .+...|.+++|+|...
T Consensus       395 -~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          395 -ATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             -CSSSEEEEEEECCCCC
T ss_pred             -CCCCCCcCCccccccc
Confidence             4678899999999753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=5.1e-26  Score=244.14  Aligned_cols=320  Identities=9%  Similarity=0.044  Sum_probs=240.4

Q ss_pred             CcceeecccCCCCcccccccc-cC-----CCCCCCCCCCCCCcceEEEEecCCc------------------------ce
Q 011457          129 SSAIVSTSASSERNLSTSAIM-ER-----IPSKWPRPEWHAPWKCYRVISGHLG------------------------WV  178 (485)
Q Consensus       129 ~~~i~~~~~~~~~~~~~t~~~-~~-----~~~~w~~~~~~~~~~~~~~l~~H~~------------------------~V  178 (485)
                      ...+..+.+++++..+++.+. +.     .+.+|+...    .+..+.+..|..                        .|
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC----CceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            345677889999998888776 66     678886543    334455544433                        38


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457          179 RSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       179 ~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~  256 (485)
                      .+++|+|||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|++++ ++.|++||+.+++..+...
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence            99999999999999986 999999998883  3445777888999999999999999887 4699999999988776555


Q ss_pred             ccCCc----------------eEEEEEecCCCEEEEEECCC---------------------------------cEEEEE
Q 011457          257 GHLSG----------------VYCLGLHPTIDILLTGGRDS---------------------------------VCRVWD  287 (485)
Q Consensus       257 ~h~~~----------------v~~l~~~~~~~~l~sg~~dg---------------------------------~i~iwd  287 (485)
                      .+...                +.+++|+|||+.|++++.|+                                 .|++||
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            44332                47899999999999988776                                 889999


Q ss_pred             CCC-CceEEEec--cCCccEEEEEEcCCCCEEEEEeC-----CCCEEEEECCCCeEEeEeccCCC----ceEEEEECCCC
Q 011457          288 IRT-KMQIFALA--GHDNTVCSVFTRPTDPQVVTGSH-----DSTIKFWDLRYGKTMLTLTHHKK----SVRAMALHPTE  355 (485)
Q Consensus       288 ~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~----~v~~l~~~p~~  355 (485)
                      +.+ ++......  .|...+..++| |++++|++++.     +..|++||+.+++....+..+..    .+..++|+|+|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG  348 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence            998 87655443  37788999999 99999987764     56799999999987776655443    45689999999


Q ss_pred             CEEEEEcCCC-EEEEECC-CCceeeeeccCCcccEEEE-EeCCCC-eE-EEEeCCC--cEEEEeCCC-Ccccccceeeec
Q 011457          356 DCFASASAEN-IKKFNLP-KGEFLHNMLSQQKTIINSM-AVNEEG-VL-ATGGDNG--SLWFWDWKS-GHNFQQAQTIVQ  427 (485)
Q Consensus       356 ~~l~~~~~~~-i~i~d~~-~~~~~~~~~~~~~~~i~~~-~~~~~~-~l-~sg~~dg--~I~iwd~~~-~~~~~~~~~~~~  427 (485)
                      +++++++.++ +.+|.+. ++. ...+ ..+...+..+ .|++++ .| ++++.++  .+++|++.. +.....+.    
T Consensus       349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~----  422 (741)
T 2ecf_A          349 SILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS----  422 (741)
T ss_dssp             CEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC----
T ss_pred             eEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc----
Confidence            9888887776 6666554 344 4444 4455566666 699999 55 4555565  899999864 43232221    


Q ss_pred             cCCCCCCccEEEEEEccCCCEEEEEECC----CcEEEecCCCC
Q 011457          428 PGSLDSEAGIYALSYDVTGSRLVTCEAD----KTIKMWREDET  466 (485)
Q Consensus       428 ~~~~~~~~~V~~l~~s~~g~~L~s~~~D----g~I~iW~~~~~  466 (485)
                           ....+..++|+|||++|+....+    +.+.+|+....
T Consensus       423 -----~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          423 -----KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             -----CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             -----cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence                 24568899999999999876554    56889987543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=2.1e-24  Score=209.89  Aligned_cols=270  Identities=11%  Similarity=0.047  Sum_probs=219.0

Q ss_pred             CCcceEEEEEccCCCEEEEEeC-------CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEE
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSA-------DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWD  245 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~-------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd  245 (485)
                      ....+..++|+|+++++++++.       ++.|.+||..+++....+.. ...+..++|+|++++++++ ..++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3467889999999998888774       56899999999998888764 3457889999999966554 5579999999


Q ss_pred             CCCCeeEEEecccCC---------ceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCC
Q 011457          246 LEQNKVIRSYHGHLS---------GVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP  314 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  314 (485)
                      +.+++.+..+..+..         .+.+++|+|+++.+++++  .++.|.+||+.+++.+..+..+...+.++.|+|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            999999888865432         278999999999877776  478999999999998888875666788999999999


Q ss_pred             EEEEEeCCCCEEEEECCCCeEEeEecc----CCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeeccCCcccE
Q 011457          315 QVVTGSHDSTIKFWDLRYGKTMLTLTH----HKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       315 ~l~s~s~dg~I~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      ++++++.++.|.+||+.+++.+..+..    +...+..++|+|++.++++++.+ + +.+||..+++.+..+.....   
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---  274 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES---  274 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---
Confidence            999999999999999999998877654    44568889999999977766654 3 99999999998877654332   


Q ss_pred             EEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCC
Q 011457          389 NSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADK  456 (485)
Q Consensus       389 ~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg  456 (485)
                      ..+.+++++ ++++++ .++.|.+||..+++....+..         ...+.+++|+++|++|+.+..++
T Consensus       275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------CSEEEEEEECTTSCEEEEEEECC
T ss_pred             ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------CCCCCeEEEcCCCCEEEEEEccc
Confidence            468899998 455544 689999999999876655432         33678999999999888777664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.5e-24  Score=209.27  Aligned_cols=282  Identities=10%  Similarity=0.093  Sum_probs=206.8

Q ss_pred             EEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCee-EEEeccc
Q 011457          182 AFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-DKQVKCWDLEQNKV-IRSYHGH  258 (485)
Q Consensus       182 ~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~V~iwd~~~~~~-~~~~~~h  258 (485)
                      .|.++++ .+++++.++.|.+||+.+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            4555544 47788889999999999999988887766677 9999999997777665 89999999999987 7777766


Q ss_pred             CCceEEEEEecCCCEEEEEECCC---cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE-EeCCCC-EEEEECCCC
Q 011457          259 LSGVYCLGLHPTIDILLTGGRDS---VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT-GSHDST-IKFWDLRYG  333 (485)
Q Consensus       259 ~~~v~~l~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~-I~iwd~~~~  333 (485)
                      .....+++|+|++++|+++..++   .|.+||+.+++.+..+.. .....+++|+|+++++++ ...++. |.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            66666699999999998655553   899999999988877764 455689999999985554 456688 999998764


Q ss_pred             eEE----eEeccCCCceEEEEECCCCCEEEEEc-CCC-EEEEECCCCce---eeeeccCCcccEEEEEeCCCC-eEEEE-
Q 011457          334 KTM----LTLTHHKKSVRAMALHPTEDCFASAS-AEN-IKKFNLPKGEF---LHNMLSQQKTIINSMAVNEEG-VLATG-  402 (485)
Q Consensus       334 ~~~----~~~~~~~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~-~l~sg-  402 (485)
                      ..+    ............++|+|++++++.++ .++ |.+||+.+++.   +..+.  ....+..++|+|++ +++++ 
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEEC
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEE
Confidence            332    12223345689999999999665554 344 99999999887   65553  23566789999999 55554 


Q ss_pred             eCCCcEEEEeCCCCccc--ccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-CCcEEEecCCCCCC
Q 011457          403 GDNGSLWFWDWKSGHNF--QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-DKTIKMWREDETAT  468 (485)
Q Consensus       403 ~~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~~~~~  468 (485)
                      ..++.|.+||..+++..  ..+..... ...........++|+|+|++|++++. ++.|.+|++.....
T Consensus       240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          240 ESTVDVFNFNQLSGTLSFVKSFGHGLL-IDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEEECCCC-CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             cCCCEEEEEECCCCceeeecccccccc-cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            45788999999988762  21111000 00011122356899999999876665 56999999987654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.7e-25  Score=240.06  Aligned_cols=279  Identities=11%  Similarity=0.063  Sum_probs=217.0

Q ss_pred             CcceEEEEEccCCCEEEEEeC-CC-----eEEEEECCCCceEEEEcccccC------------------------EEEEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSA-DR-----TIKIWDVAKGTLKLTLTGHIEQ------------------------VRGLA  224 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~-dg-----~I~iwd~~~~~~~~~~~~h~~~------------------------V~~l~  224 (485)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+...                        |.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457899999999999999998 88     9999999999887777655433                        78999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCe--eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc
Q 011457          225 VSSKHTYMFSAGDDKQVKCWDLEQNK--VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN  302 (485)
Q Consensus       225 ~s~~~~~l~s~~~dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  302 (485)
                      |+|||++|++++. +.|++||+.++.  .+..+..|...+.+++|+|||++|++++ ++.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            9999999999886 999999999873  4455667888899999999999999987 46899999998876654443333


Q ss_pred             c----------------EEEEEEcCCCCEEEEEeCCC---------------------------------CEEEEECCC-
Q 011457          303 T----------------VCSVFTRPTDPQVVTGSHDS---------------------------------TIKFWDLRY-  332 (485)
Q Consensus       303 ~----------------v~~l~~~~~~~~l~s~s~dg---------------------------------~I~iwd~~~-  332 (485)
                      .                +.++.|+|||++|++++.|+                                 .|.+||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                47799999999999988766                                 789999988 


Q ss_pred             CeEEeEec--cCCCceEEEEECCCCCEEEEEcC------CCEEEEECCCCceeeeeccCCcc---cEEEEEeCCCC-eEE
Q 011457          333 GKTMLTLT--HHKKSVRAMALHPTEDCFASASA------ENIKKFNLPKGEFLHNMLSQQKT---IINSMAVNEEG-VLA  400 (485)
Q Consensus       333 ~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~~~~~~~---~i~~~~~~~~~-~l~  400 (485)
                      ++......  .+...+..++| |||+.|+.++.      ..|.+||+.+++....+......   .+..+.|+|+| +++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence            77654433  36678999999 99999887653      12999999998876554333322   34678999999 888


Q ss_pred             EEeCCCcEEEEeCC-CCcccccceeeeccCCCCCCccEEEE-EEccCCCEEEEEE-CCC--cEEEecCCC
Q 011457          401 TGGDNGSLWFWDWK-SGHNFQQAQTIVQPGSLDSEAGIYAL-SYDVTGSRLVTCE-ADK--TIKMWREDE  465 (485)
Q Consensus       401 sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~V~~l-~~s~~g~~L~s~~-~Dg--~I~iW~~~~  465 (485)
                      +++.+|.+.||.+. ++. ...+.        .+...|..+ .|+|+|+.|+..+ .|+  .++||+++.
T Consensus       353 ~~~~~g~~~l~~~~~~~~-~~~l~--------~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          353 SSERTGFQHLYRIDSKGK-AAALT--------HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EECTTSSCEEEEECSSSC-EEESC--------CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             EecCCCccEEEEEcCCCC-eeeee--------ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            88899988888765 233 22221        345668777 5999999886554 454  899999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=4.8e-25  Score=212.68  Aligned_cols=272  Identities=11%  Similarity=0.070  Sum_probs=212.3

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEccccc--CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecc-c----C
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHIE--QVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHG-H----L  259 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~--~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~-h----~  259 (485)
                      ++|++++.++.|.+||+.+++....+.....  .+..++|+|++++++ ++..++.|.+||+.+++.+..+.. +    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            5789999999999999999998887763322  578999999998765 555678999999999998877752 2    2


Q ss_pred             CceEEEEEecCCCEEEEEE------------CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          260 SGVYCLGLHPTIDILLTGG------------RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       260 ~~v~~l~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                      ..+.+++|+|++++|++++            .++.|.+||+.+++.+..+.. ...+.++.|+|++++|+++  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            2577899999999988886            679999999999888777764 4567889999999988887  689999


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-------------------------CEEEEECCCCceeeeecc
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-------------------------NIKKFNLPKGEFLHNMLS  382 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-------------------------~i~i~d~~~~~~~~~~~~  382 (485)
                      ||+.+++....+..+.. ...+.|+|++..++..+..                         .+.+||..+++.......
T Consensus       159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  237 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence            99999998877765431 1123789998866554433                         257899998887533233


Q ss_pred             CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       383 ~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      .+...+..+.++|++ +++++  ++.|++||+.+++....+..         ...+.+++|+|+|++|++++.|+.|.+|
T Consensus       238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~i~v~  306 (337)
T 1pby_B          238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---------PHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---------CCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence            455678889999999 66666  79999999998876554431         2346789999999999999999999999


Q ss_pred             cCCCCCCCCCCCC
Q 011457          462 REDETATPETHPL  474 (485)
Q Consensus       462 ~~~~~~~~~~~~~  474 (485)
                      ++.+.......+.
T Consensus       307 d~~~~~~~~~~~~  319 (337)
T 1pby_B          307 DAETLEKKGQVDL  319 (337)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECcCCcEEEEEEc
Confidence            9988775544444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.6e-25  Score=239.62  Aligned_cols=279  Identities=9%  Similarity=0.108  Sum_probs=210.9

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc---CEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE---QVRGLAVSSKHTYMFSAGDD---------KQVKCW  244 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~d---------g~V~iw  244 (485)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.|.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678899999997776 6899999999999998888877765   49999999999999999764         788899


Q ss_pred             ECCCCeeEEEe---cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-----------------
Q 011457          245 DLEQNKVIRSY---HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-----------------  304 (485)
Q Consensus       245 d~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----------------  304 (485)
                      |+.+++. ..+   .+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            9998876 333   244455889999999999999886 799999999988776665444333                 


Q ss_pred             -EEEEEcCCCCEEEEEeCCC----------------------------------CEEEEECCCCeEEeEeccC------C
Q 011457          305 -CSVFTRPTDPQVVTGSHDS----------------------------------TIKFWDLRYGKTMLTLTHH------K  343 (485)
Q Consensus       305 -~~l~~~~~~~~l~s~s~dg----------------------------------~I~iwd~~~~~~~~~~~~~------~  343 (485)
                       .++.|+|||++|++++.|+                                  .|++||+.+++....+..+      .
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence             7899999999999887653                                  7999999988765566543      5


Q ss_pred             CceEEEEECCCCCEEEEEcCC-----CEEEEECCCCceeeeeccCCcccE----EEEEeCCCC-eEEE--EeCCC-----
Q 011457          344 KSVRAMALHPTEDCFASASAE-----NIKKFNLPKGEFLHNMLSQQKTII----NSMAVNEEG-VLAT--GGDNG-----  406 (485)
Q Consensus       344 ~~v~~l~~~p~~~~l~~~~~~-----~i~i~d~~~~~~~~~~~~~~~~~i----~~~~~~~~~-~l~s--g~~dg-----  406 (485)
                      ..+..++|+|||+++++....     .|.+||+.+++....+...+...+    ..+.|+|+| .|+.  +..+|     
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  334 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF  334 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence            678999999999988766432     299999999887655433333333    378999999 4553  55677     


Q ss_pred             -cEEEEeC-CCCcc--cccceeeeccCCCCCCccEEE-EEEccCCCEEEEEECC---CcEEEecCCCC
Q 011457          407 -SLWFWDW-KSGHN--FQQAQTIVQPGSLDSEAGIYA-LSYDVTGSRLVTCEAD---KTIKMWREDET  466 (485)
Q Consensus       407 -~I~iwd~-~~~~~--~~~~~~~~~~~~~~~~~~V~~-l~~s~~g~~L~s~~~D---g~I~iW~~~~~  466 (485)
                       .|++||+ .++..  ...+.        .+...+.. ++|+|+|++|+..+.+   +.++||+++..
T Consensus       335 ~~l~~~d~~~~~~~~~~~~l~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          335 YHITVSSSQPNSSNDNIQSIT--------SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EEEEEECSSCCSSSCCCCBSC--------CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             eEEEEEeccCCCCccceeEee--------cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence             5777773 44331  22221        12233444 6999999999877665   78999998753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.1e-24  Score=233.22  Aligned_cols=310  Identities=10%  Similarity=0.006  Sum_probs=224.3

Q ss_pred             eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCc---ceEEEEEccCCCEEEEEeCC---------CeE
Q 011457          132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLG---WVRSVAFDHSNTWFCTGSAD---------RTI  199 (485)
Q Consensus       132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~~~~l~tgs~d---------g~I  199 (485)
                      +.++.+++++.++++ +.+..+.+|+...    .+....+.+|..   .|.+++|||||++|++++.+         +.|
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~----g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCC----CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            456788999987766 5788889997644    344566677765   49999999999999999875         788


Q ss_pred             EEEECCCCceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCce--------------
Q 011457          200 KIWDVAKGTLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV--------------  262 (485)
Q Consensus       200 ~iwd~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v--------------  262 (485)
                      ++||+.+++. ..+.   +|...+..++|+|||++|+.++. +.|++||+.+++..+....+...+              
T Consensus        94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence            8999998876 3333   34455889999999999999876 799999999988777665544333              


Q ss_pred             ----EEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCceEEEeccC----
Q 011457          263 ----YCLGLHPTIDILLTGGRDS----------------------------------VCRVWDIRTKMQIFALAGH----  300 (485)
Q Consensus       263 ----~~l~~~~~~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~~~~~~~----  300 (485)
                          .+++|+|||+.|++++.|+                                  .|++||+.+++....+..+    
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence                7899999999999987653                                  7999999988866666654    


Q ss_pred             --CccEEEEEEcCCCCEEEEEeC----CCCEEEEECCCCeEEeEecc-CCCce----EEEEECCCCCEEEEE--cCCC--
Q 011457          301 --DNTVCSVFTRPTDPQVVTGSH----DSTIKFWDLRYGKTMLTLTH-HKKSV----RAMALHPTEDCFASA--SAEN--  365 (485)
Q Consensus       301 --~~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~~-~~~~v----~~l~~~p~~~~l~~~--~~~~--  365 (485)
                        ...+..+.|+||++++++.+.    +..|++||+.+++....+.. +...+    ..++|+|+|+.|+..  ..++  
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence              678999999999998877653    35799999999887665543 23333    378999999966643  3333  


Q ss_pred             -----EEEEE-CCCCce--eeeeccCCcccEEEEEeCCCC-eEEEEeCC---CcEEEEeCCCCcc--cccceeeeccCCC
Q 011457          366 -----IKKFN-LPKGEF--LHNMLSQQKTIINSMAVNEEG-VLATGGDN---GSLWFWDWKSGHN--FQQAQTIVQPGSL  431 (485)
Q Consensus       366 -----i~i~d-~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d---g~I~iwd~~~~~~--~~~~~~~~~~~~~  431 (485)
                           |.+|| ...+..  ...+..++......+.|+|++ .|+..+.+   +.+++|++.....  ...+.     ...
T Consensus       332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~-----~~~  406 (723)
T 1xfd_A          332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS-----CDL  406 (723)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS-----TTS
T ss_pred             cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec-----ccc
Confidence                 77777 344431  444433333344457999999 66555444   7899999865321  11111     001


Q ss_pred             CCCccEEEEEEccCCCEEEEEE
Q 011457          432 DSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      .+...+..++|+|+|++|+...
T Consensus       407 ~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          407 VENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             SSSCCCCEEEECTTSSEEEEEC
T ss_pred             cCCCCeEEEEECCCCCEEEEEc
Confidence            1455688999999999988754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.8e-24  Score=202.83  Aligned_cols=254  Identities=9%  Similarity=0.066  Sum_probs=192.2

Q ss_pred             EEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEeccc-CCceEEEEEec
Q 011457          192 TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-NKVIRSYHGH-LSGVYCLGLHP  269 (485)
Q Consensus       192 tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-~~~~~~~~~h-~~~v~~l~~~~  269 (485)
                      .++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            3467899999999988866 4555889999999999999999986 78999999999 8877776655 36789999999


Q ss_pred             CCCEEEEEEC--CCcEEEE--ECCCCceEEEeccCCccEEEEEEcCCCCEEE-EEeCCCCEEEEECCC-CeEEeEeccCC
Q 011457          270 TIDILLTGGR--DSVCRVW--DIRTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDSTIKFWDLRY-GKTMLTLTHHK  343 (485)
Q Consensus       270 ~~~~l~sg~~--dg~i~iw--d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~I~iwd~~~-~~~~~~~~~~~  343 (485)
                      ++++|++++.  ++...||  ++.++. ...+..+ ..+..+.|+|++++|+ +++.++.+++|++.. +.....+..+.
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence            9999999993  3445555  545544 4444433 3588999999999887 788899999998642 33445666677


Q ss_pred             CceEEEEECCCCCEEEEEcC-C-CEEEEECC-CCceeeeeccCCcccEEEEEeCCCC-eEEEEeCC-----------CcE
Q 011457          344 KSVRAMALHPTEDCFASASA-E-NIKKFNLP-KGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDN-----------GSL  408 (485)
Q Consensus       344 ~~v~~l~~~p~~~~l~~~~~-~-~i~i~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d-----------g~I  408 (485)
                      ..+.++.|+|++.+++.++. + .+.+|++. .+.....+ ..+...+..+.|+|++ +|++++.+           +.|
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence            88999999999998876653 4 48888775 34444443 4556788899999999 77777665           569


Q ss_pred             EEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCC
Q 011457          409 WFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADK  456 (485)
Q Consensus       409 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg  456 (485)
                      ++||+.+++.......      ..+...+.+++|+|+|++|++++.|.
T Consensus       252 ~~~d~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          252 QLMDMDGGNVETLFDL------FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEETTSCSCEEEEEE------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEecCCCCceeeecc------CCCCcccccceECCCCCEEEEEEecc
Confidence            9999988765332221      12455678899999999999887664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=9.8e-24  Score=203.99  Aligned_cols=266  Identities=12%  Similarity=0.200  Sum_probs=190.5

Q ss_pred             EEEEEeCCCeEEEEECC-CCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCe--eEEEecccCC
Q 011457          189 WFCTGSADRTIKIWDVA-KGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-KQVKCWDLE--QNK--VIRSYHGHLS  260 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~-~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~V~iwd~~--~~~--~~~~~~~h~~  260 (485)
                      .+++++.|+.|++||+. +++  .... ..+...+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+..+. 
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence            44555779999999985 332  2333 3477789999999999999988876 999999997  554  344555433 


Q ss_pred             ceEEEEEecCCCEEEEEEC-CCcEEEEECC---CCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCC-Ce
Q 011457          261 GVYCLGLHPTIDILLTGGR-DSVCRVWDIR---TKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRY-GK  334 (485)
Q Consensus       261 ~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~-~~  334 (485)
                      .+.+++|+|++++|++++. ++.|.+||+.   ..+.+..+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            7889999999998877765 8899999994   3444455543 34688999999999888887 899999999987 54


Q ss_pred             EEe----Eecc-CCCceEEEEECCCCCEEEEEc-CCC-EEEEECCC--Cce--eeeec---cC--CcccEEEEEeCCCC-
Q 011457          335 TML----TLTH-HKKSVRAMALHPTEDCFASAS-AEN-IKKFNLPK--GEF--LHNML---SQ--QKTIINSMAVNEEG-  397 (485)
Q Consensus       335 ~~~----~~~~-~~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~--~~~--~~~~~---~~--~~~~i~~~~~~~~~-  397 (485)
                      ...    .+.. ....+..++|+|++.++++++ .++ +.+|++..  ++.  ...+.   ..  ....+..++|+|++ 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  243 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  243 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence            432    2222 345788999999999776554 444 99999953  433  22211   11  12356789999999 


Q ss_pred             eEE-EEeCCCcEEEEeCCC--CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-CCCcEEEecCC
Q 011457          398 VLA-TGGDNGSLWFWDWKS--GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-ADKTIKMWRED  464 (485)
Q Consensus       398 ~l~-sg~~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I~iW~~~  464 (485)
                      +|+ ++..++.|.+||+..  +. ........      ....+.+++|+|+|++|++++ .|+.|.+|+++
T Consensus       244 ~l~v~~~~~~~i~v~d~~~~~~~-~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVSEDGSV-LSKEGFQP------TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCC-EEEEEEEE------CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEEEecCCCEEEEEEEcCCCCc-eEEeeeec------CCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            565 555789999999983  22 12221111      122377899999999998888 68999999665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=3.6e-24  Score=238.23  Aligned_cols=319  Identities=11%  Similarity=0.034  Sum_probs=245.9

Q ss_pred             CCCcceeecccCCCCccccccccc------CCCCCCCCCCCCCCcceEEEEecCCcce-------EEEEEccCCCEEEEE
Q 011457          127 GKSSAIVSTSASSERNLSTSAIME------RIPSKWPRPEWHAPWKCYRVISGHLGWV-------RSVAFDHSNTWFCTG  193 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~------~~~~~w~~~~~~~~~~~~~~l~~H~~~V-------~~l~~sp~~~~l~tg  193 (485)
                      +|...+.+..+||++..++..+.+      ..+.+|+...     ...+.|..|.+.+       .+++|+|||++++++
T Consensus        50 ~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~-----g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~  124 (1045)
T 1k32_A           50 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-----GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  124 (1045)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-----TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC-----CCeEEcccCCCcccccccccccccCCCCCEEEEEE
Confidence            477788899999999988876543      3556675533     3367788999998       999999999977777


Q ss_pred             eCC------CeEEEEECCCCceE-------------------------------------------------EEEccccc
Q 011457          194 SAD------RTIKIWDVAKGTLK-------------------------------------------------LTLTGHIE  218 (485)
Q Consensus       194 s~d------g~I~iwd~~~~~~~-------------------------------------------------~~~~~h~~  218 (485)
                      +.+      ..|.+|++.+++..                                                 ..+.+|..
T Consensus       125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~  204 (1045)
T 1k32_A          125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST  204 (1045)
T ss_dssp             CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred             CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence            754      46888887655422                                                 12345677


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457          219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  297 (485)
                      .+.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+...+|+|+|+.|+++ .++.|++||+... .+..+
T Consensus       205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l  280 (1045)
T 1k32_A          205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKI  280 (1045)
T ss_dssp             CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEEC
T ss_pred             cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-Eeeee
Confidence            7888999888 6777888889999998653 44455555554 46678999999988887 4899999999544 34455


Q ss_pred             cc-----------CCccEEEEEEc-CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEEcCC
Q 011457          298 AG-----------HDNTVCSVFTR-PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       298 ~~-----------~~~~v~~l~~~-~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~~~  364 (485)
                      ..           |...+.++.|+ |++++|++++ ++.|.+|++..++... +..+.. .+..++|+ ++..|+.++.+
T Consensus       281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~  357 (1045)
T 1k32_A          281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTRE  357 (1045)
T ss_dssp             CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred             ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECC
Confidence            54           33468999999 9999999888 8899999998776543 556666 89999999 99988888775


Q ss_pred             C-EE-EEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEE
Q 011457          365 N-IK-KFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS  441 (485)
Q Consensus       365 ~-i~-i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  441 (485)
                      . +. +|+...++.. .+. .+...+..++|+|+| +|++++.++.|++||+.+++......        .+...+.+++
T Consensus       358 ~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~--------~~~~~v~~~~  427 (1045)
T 1k32_A          358 GDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--------SREAMITDFT  427 (1045)
T ss_dssp             EEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------CSSSCCCCEE
T ss_pred             CceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc--------CCCCCccceE
Confidence            4 77 8898877644 333 666789999999999 89999999999999999887554332        3556788999


Q ss_pred             EccCCCEEEEEECCC----------cEEEecCCCCC
Q 011457          442 YDVTGSRLVTCEADK----------TIKMWREDETA  467 (485)
Q Consensus       442 ~s~~g~~L~s~~~Dg----------~I~iW~~~~~~  467 (485)
                      |+|||++|++++.++          .|++|++.++.
T Consensus       428 ~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          428 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             ECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            999999999887754          89999998754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=7.1e-24  Score=235.84  Aligned_cols=311  Identities=10%  Similarity=0.024  Sum_probs=241.3

Q ss_pred             eecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEec-----------CCcceEEEEEc-cCCCEEEEEeCCCeEE
Q 011457          133 VSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISG-----------HLGWVRSVAFD-HSNTWFCTGSADRTIK  200 (485)
Q Consensus       133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~-----------H~~~V~~l~~s-p~~~~l~tgs~dg~I~  200 (485)
                      ....+++++..++.. .+..+..|+..    + ..+..+.+           |.+.|.+++|+ |+|++|++++ ++.|.
T Consensus       248 ~~~~~SpDG~~la~~-~~~~i~~~d~~----~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~  320 (1045)
T 1k32_A          248 YPRHLNTDGRRILFS-KGGSIYIFNPD----T-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF  320 (1045)
T ss_dssp             CEEEEEESSSCEEEE-ETTEEEEECTT----T-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred             ceeeEcCCCCEEEEE-eCCEEEEecCC----c-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence            344677888877665 46666677651    1 12224444           55689999999 9999999988 78999


Q ss_pred             EEECCCCceEEEEccccc-CEEEEEEcCCCCEEEEEeCCCcEE-EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE
Q 011457          201 IWDVAKGTLKLTLTGHIE-QVRGLAVSSKHTYMFSAGDDKQVK-CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG  278 (485)
Q Consensus       201 iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~V~-iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~  278 (485)
                      +|++.+++.. .+..|.. .+..++|+ +++.|++++.++.+. +||+.+++.... .+|...+..++|+|+|++|++++
T Consensus       321 ~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~  397 (1045)
T 1k32_A          321 IQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVAN  397 (1045)
T ss_dssp             EECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEE
T ss_pred             EEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEEC
Confidence            9999887654 4666777 89999999 999999999888898 999987765544 47888999999999999999999


Q ss_pred             CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC----------CEEEEECCCCeEEeEeccCCCceEE
Q 011457          279 RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS----------TIKFWDLRYGKTMLTLTHHKKSVRA  348 (485)
Q Consensus       279 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg----------~I~iwd~~~~~~~~~~~~~~~~v~~  348 (485)
                      .++.|++||+.+++....+.+|...+.+++|+|++++|++++.++          .|++||+.+++ +..+..+...+..
T Consensus       398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~  476 (1045)
T 1k32_A          398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA  476 (1045)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred             CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence            999999999999988887778999999999999999998887654          89999999887 6777778888999


Q ss_pred             EEECCCCCEEEEEcCCC-EEEEECCCCce-------e-----------------------------------eeeccCCc
Q 011457          349 MALHPTEDCFASASAEN-IKKFNLPKGEF-------L-----------------------------------HNMLSQQK  385 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~~-i~i~d~~~~~~-------~-----------------------------------~~~~~~~~  385 (485)
                      ++|+|+|++|+..+.++ ...|+......       +                                   ...+..+.
T Consensus       477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~  556 (1045)
T 1k32_A          477 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP  556 (1045)
T ss_dssp             EEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred             ceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCC
Confidence            99999999988887654 55554322211       0                                   00012244


Q ss_pred             ccEEEEEeCCCC-eEEE-------------EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457          386 TIINSMAVNEEG-VLAT-------------GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       386 ~~i~~~~~~~~~-~l~s-------------g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                      ..+..+.+++++ ++++             ....+.|++||+.+++.....            ..+..++|+|||++|++
T Consensus       557 ~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------------~~v~~~~~S~DG~~l~~  624 (1045)
T 1k32_A          557 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------------NNLTDLRLSADRKTVMV  624 (1045)
T ss_dssp             BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------------EEEEEEEECTTSCEEEE
T ss_pred             CChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------------cCcceEEECCCCCEEEE
Confidence            568889999999 4554             123557899999887642211            34788999999999999


Q ss_pred             EECCCcEEEecCCCCC
Q 011457          452 CEADKTIKMWREDETA  467 (485)
Q Consensus       452 ~~~Dg~I~iW~~~~~~  467 (485)
                      ++.| .|++|++.+..
T Consensus       625 ~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          625 RKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EETT-SCEEEEESSCT
T ss_pred             EcCC-cEEEEeCccCc
Confidence            9866 79999998765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=1.5e-23  Score=223.80  Aligned_cols=277  Identities=9%  Similarity=0.100  Sum_probs=207.6

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----Ce
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-----NK  250 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-----~~  250 (485)
                      ..|.+++|+|+ ..++.+ .|+.|++||+.+++... +..+...+.+++|+|+|++|+++ .|+.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            57999999999 656555 35999999999887654 44467778899999999999985 679999999998     87


Q ss_pred             eEEEecccCCc--------------eEEEEEecCCCEEEEEE---------------------------------CCCcE
Q 011457          251 VIRSYHGHLSG--------------VYCLGLHPTIDILLTGG---------------------------------RDSVC  283 (485)
Q Consensus       251 ~~~~~~~h~~~--------------v~~l~~~~~~~~l~sg~---------------------------------~dg~i  283 (485)
                      ..+....+...              +.++.|+|||++|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            76655444433              48899999999999987                                 45789


Q ss_pred             EEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEeEec-c-CCC---ceEEEEE
Q 011457          284 RVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTMLTLT-H-HKK---SVRAMAL  351 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~-~-~~~---~v~~l~~  351 (485)
                      ++||+.+++......  .|...+.++.|+|++++|++++.++     .|++||+.+++....+. . +..   .+.++.|
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence            999999887654432  4667899999999999999888776     89999999984333332 1 221   2467899


Q ss_pred             CC--CCCEEEEEcCCC-EEEEECC-CCceeeeeccCCcccEEE-EEeCCCC-eEE-EEeCCC----cEEEEeCCCCcccc
Q 011457          352 HP--TEDCFASASAEN-IKKFNLP-KGEFLHNMLSQQKTIINS-MAVNEEG-VLA-TGGDNG----SLWFWDWKSGHNFQ  420 (485)
Q Consensus       352 ~p--~~~~l~~~~~~~-i~i~d~~-~~~~~~~~~~~~~~~i~~-~~~~~~~-~l~-sg~~dg----~I~iwd~~~~~~~~  420 (485)
                      +|  +|.++++++.++ +.+|.+. ++..+..+ ..+...+.. +.|++++ .|+ ++..++    .|+.||..++.. .
T Consensus       318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~  395 (706)
T 2z3z_A          318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K  395 (706)
T ss_dssp             CTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E
T ss_pred             ecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e
Confidence            99  999888887766 7777765 55655555 344455555 8999999 554 444554    677777776542 2


Q ss_pred             cceeeeccCCCCCCccEEEEEEccCCCEEEEEECC----CcEEEecCCCCC
Q 011457          421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD----KTIKMWREDETA  467 (485)
Q Consensus       421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D----g~I~iW~~~~~~  467 (485)
                      .+         .+...+.+++|+|+|++|+..+.+    +.|++|+..++.
T Consensus       396 ~l---------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          396 DL---------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ES---------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ec---------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            11         245568999999999999877554    569999987764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=3.7e-23  Score=199.90  Aligned_cols=269  Identities=12%  Similarity=0.205  Sum_probs=191.1

Q ss_pred             ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCC-CeEEEEECC--CCce--EEEEcccc
Q 011457          143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSAD-RTIKIWDVA--KGTL--KLTLTGHI  217 (485)
Q Consensus       143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~d-g~I~iwd~~--~~~~--~~~~~~h~  217 (485)
                      ++++...+..+.+|.... ....+.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +..+..+.
T Consensus         7 l~~~~~~~~~v~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNH-EGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECT-TSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEeCCCCCeEEEEEECC-CCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence            344445677778886532 2223344443 578899999999999999988886 999999997  5553  34454443


Q ss_pred             cCEEEEEEcCCCCEEEEEeC-CCcEEEEECC---CCeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCC-C
Q 011457          218 EQVRGLAVSSKHTYMFSAGD-DKQVKCWDLE---QNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRT-K  291 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~-dg~V~iwd~~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~-~  291 (485)
                       .+..++|+|++++|++++. ++.|.+||+.   ..+.+..+..+ ..+.+++|+|++++|++++ .++.|.+||+.+ +
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence             7889999999998877765 8899999994   44555555533 4688999999999888887 899999999987 5


Q ss_pred             ceEE----Eecc-CCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCC--CeE--EeEec---cC---CCceEEEEECCCC
Q 011457          292 MQIF----ALAG-HDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRY--GKT--MLTLT---HH---KKSVRAMALHPTE  355 (485)
Q Consensus       292 ~~~~----~~~~-~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~--~~~--~~~~~---~~---~~~v~~l~~~p~~  355 (485)
                      +...    .+.. ....+..++|+|+++++++++ .++.|.+||+..  ++.  ...+.   ..   ...+..++|+|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            4432    2222 345788999999999776555 789999999953  332  22222   11   2356789999999


Q ss_pred             CEEEEEc-CCC-EEEEECC--CC--ceeeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeC--CCCc
Q 011457          356 DCFASAS-AEN-IKKFNLP--KG--EFLHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDW--KSGH  417 (485)
Q Consensus       356 ~~l~~~~-~~~-i~i~d~~--~~--~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~--~~~~  417 (485)
                      .+++++. .++ +.+|++.  .+  +.+..+ .... .+..++|++++ +|++++ .++.|.+|++  .+++
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeee-cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            8777544 444 9999998  33  333333 2222 37889999999 677776 6899999955  4553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.8e-22  Score=194.68  Aligned_cols=268  Identities=10%  Similarity=0.082  Sum_probs=200.4

Q ss_pred             cccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeC-CCeEEEEECCCCce-EEEEcccccC
Q 011457          142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSA-DRTIKIWDVAKGTL-KLTLTGHIEQ  219 (485)
Q Consensus       142 ~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~-dg~I~iwd~~~~~~-~~~~~~h~~~  219 (485)
                      .++++...+..+.+|+...    .+....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+...
T Consensus        11 ~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~   85 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDT----LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS   85 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTT----CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC
T ss_pred             EEEEEecCCCeEEEEeCcc----cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC
Confidence            3466677778888886533    45666666677777 9999999997766665 88999999999987 7777767666


Q ss_pred             EEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEE-EECCCc-EEEEECCCCceE
Q 011457          220 VRGLAVSSKHTYMFSAGDDK---QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLT-GGRDSV-CRVWDIRTKMQI  294 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~~dg---~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-g~~dg~-i~iwd~~~~~~~  294 (485)
                      ..+++|+|++++|+++..++   .|.+||+.+++.+..+.. .....+++|+|+|++|++ ...++. |.+|++.....+
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~  164 (331)
T 3u4y_A           86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL  164 (331)
T ss_dssp             CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred             ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence            66699999999999655553   899999999999888764 455789999999985554 456688 999999864433


Q ss_pred             E----EeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeE---EeEeccCCCceEEEEECCCCCEEEEEcCC--
Q 011457          295 F----ALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKT---MLTLTHHKKSVRAMALHPTEDCFASASAE--  364 (485)
Q Consensus       295 ~----~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~~~~l~~~~~~--  364 (485)
                      .    ...........+.|+|+++++++++ .++.|.+||+.+++.   +..+.. ...+..++|+|+|++++.++.+  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~  243 (331)
T 3u4y_A          165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTV  243 (331)
T ss_dssp             EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEE
T ss_pred             eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCC
Confidence            2    2223445689999999999665554 688999999998887   666664 3567899999999977766543  


Q ss_pred             CEEEEECCCCce--eeeeccC------CcccEEEEEeCCCC-eEE-EEeCCCcEEEEeCCCC
Q 011457          365 NIKKFNLPKGEF--LHNMLSQ------QKTIINSMAVNEEG-VLA-TGGDNGSLWFWDWKSG  416 (485)
Q Consensus       365 ~i~i~d~~~~~~--~~~~~~~------~~~~i~~~~~~~~~-~l~-sg~~dg~I~iwd~~~~  416 (485)
                      .|.+||..+++.  +..+...      .......++|+|++ +|+ ++..++.|.+||+...
T Consensus       244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            399999998876  3322211      11223568999999 554 4555679999999764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=5.5e-23  Score=206.22  Aligned_cols=289  Identities=14%  Similarity=0.087  Sum_probs=198.5

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCC----------ceEEE-----EcccccCEEEEEEcCCCCEEE----EE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----------TLKLT-----LTGHIEQVRGLAVSSKHTYMF----SA  235 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~----------~~~~~-----~~~h~~~V~~l~~s~~~~~l~----s~  235 (485)
                      ...++.+++++++.++++++.|+ |+||+....          .....     ...+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44689999999999999999887 899875311          01111     112567899999999999999    78


Q ss_pred             eCCCcEEEEECCCC--------e---eEEEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCcc
Q 011457          236 GDDKQVKCWDLEQN--------K---VIRSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT  303 (485)
Q Consensus       236 ~~dg~V~iwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  303 (485)
                      +.|+.|++||+.++        +   .+..+.+|...|.+++|+|+ +++|++++.||+|++||++++..+....+|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998654        2   24566789999999999998 789999999999999999998777777788999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC-------CCceEEEEECCCCCEEEEEcCC--------CEEE
Q 011457          304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH-------KKSVRAMALHPTEDCFASASAE--------NIKK  368 (485)
Q Consensus       304 v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~~~l~~~~~~--------~i~i  368 (485)
                      |.+++|+|++++|++|+.||.|++||++ ++....+..+       ...|.++.|++++.++++.+..        .+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 5555555433       2379999999988887654322        1889


Q ss_pred             EECCCCc-----eeeeecc------CCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcc-ccccee-----eecc-
Q 011457          369 FNLPKGE-----FLHNMLS------QQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHN-FQQAQT-----IVQP-  428 (485)
Q Consensus       369 ~d~~~~~-----~~~~~~~------~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~-~~~~~~-----~~~~-  428 (485)
                      |++.+.+     ....+..      ........+..-++.  .+++.+..+.|.++....... ......     ...| 
T Consensus       274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~  353 (434)
T 2oit_A          274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPV  353 (434)
T ss_dssp             EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCB
T ss_pred             EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccccC
Confidence            9997652     1122111      111111122222333  444455556666666432211 100000     0000 


Q ss_pred             CCCCCCccEEEEEEcc---------------CCCEEEEEECCCcEEEecCCC
Q 011457          429 GSLDSEAGIYALSYDV---------------TGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       429 ~~~~~~~~V~~l~~s~---------------~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      ...+.+.....++++-               --..|.+-+.||.+..|.+-.
T Consensus       354 ~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          354 TDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             CTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             CCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            0111233344555432               125688889999999998865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=7.4e-23  Score=198.44  Aligned_cols=280  Identities=11%  Similarity=0.089  Sum_probs=201.5

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecc
Q 011457          180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      .+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678889999999999999999999999888877543 2578999999998665 455789999999999998877753


Q ss_pred             c------CCceEEEEEecCCCEEEEEECC------------CcEEEEECCCCc---eEEEeccCCccEEEEEEcCCCCEE
Q 011457          258 H------LSGVYCLGLHPTIDILLTGGRD------------SVCRVWDIRTKM---QIFALAGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       258 h------~~~v~~l~~~~~~~~l~sg~~d------------g~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l  316 (485)
                      .      ...+.+++|+|+|++|++++.+            +.|.+||+.+++   .+..+. +...+.+++|+|+++ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence            2      2337889999999999998865            899999998843   333443 344688999999999 6


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEeccCCC------------------------ceEEEEECCCCCEEEEEcCC--CEEEEE
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLTLTHHKK------------------------SVRAMALHPTEDCFASASAE--NIKKFN  370 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------------------~v~~l~~~p~~~~l~~~~~~--~i~i~d  370 (485)
                      ++++  +.|.+||+.+++.+..+.....                        ....+++++++.........  .+..++
T Consensus       162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            6654  4499999999988777654320                        23446666554221111111  133456


Q ss_pred             CCCCceeeeeccCCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE
Q 011457          371 LPKGEFLHNMLSQQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR  448 (485)
Q Consensus       371 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  448 (485)
                      ..+++....-.......+..++++| ++ +++++  ++.|.+||+.+++....+..         ...+.+++|+++|++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~  308 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---------DHTYYCVAFDKKGDK  308 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCCEEEECSSSSC
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---------CCCccceEECCCCCE
Confidence            6655543322233456788999999 88 66666  88999999998876554431         234678999999999


Q ss_pred             EEEEECCCcEEEecCCCCCCCCCCCC
Q 011457          449 LVTCEADKTIKMWREDETATPETHPL  474 (485)
Q Consensus       449 L~s~~~Dg~I~iW~~~~~~~~~~~~~  474 (485)
                      |++++.++.|++||..+.......++
T Consensus       309 l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          309 LYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEecCCCeEEEEeccccceeeeeec
Confidence            99988999999999988765544433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=1.1e-22  Score=212.26  Aligned_cols=268  Identities=9%  Similarity=-0.004  Sum_probs=201.0

Q ss_pred             CCcceEEEEEccCCCEEEEEeC-CCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSA-DRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQ  248 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~  248 (485)
                      +..+|.+++|+|||++||+++. ||+++||++..++.. .+..|. ..+..++|+|+ +++++++.   +....+|.+..
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            3567999999999999999887 999999999666554 455555 68999999999 77777765   45556655432


Q ss_pred             ---CeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC--
Q 011457          249 ---NKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD--  322 (485)
Q Consensus       249 ---~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--  322 (485)
                         +... .+... ..+...+|+|+++ .+++.+.++.+.+||+.+++.......+.   .++.|+|||++|++++.+  
T Consensus        98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred             cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence               3322 34322 2344678888876 34444455556699999887655544333   789999999999988877  


Q ss_pred             --CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEEE-----
Q 011457          323 --STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSMA-----  392 (485)
Q Consensus       323 --g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~-----  392 (485)
                        +.|++||+.+++.. .+..+...+..++|+|||+.|+++..++   |++||+.+++..  ....+...+..+.     
T Consensus       173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~  249 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAIT  249 (582)
T ss_dssp             TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEE
T ss_pred             CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhcccc
Confidence              78999999887754 6677888899999999999999776665   999999988876  4455555555555     


Q ss_pred             ---eCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCc---EEEecCCC
Q 011457          393 ---VNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKT---IKMWREDE  465 (485)
Q Consensus       393 ---~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~---I~iW~~~~  465 (485)
                         |+|+| ++++++.+|.+++|++  |+...           .....|.+++|+ +|+++++++.+.+   |.+|+...
T Consensus       250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----------~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          250 WLGYLPDGRLAVVARREGRSAVFID--GERVE-----------APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEET--TEEEC-----------CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             ceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----------cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence               99999 8888999999999999  54332           123568899999 9999999888744   77777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.4e-22  Score=190.99  Aligned_cols=250  Identities=13%  Similarity=0.088  Sum_probs=191.4

Q ss_pred             cccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCC-CceEEEEccc-ccCEEEEEE
Q 011457          148 IMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK-GTLKLTLTGH-IEQVRGLAV  225 (485)
Q Consensus       148 ~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h-~~~V~~l~~  225 (485)
                      +.+..+.+|+...     .....+..|.+.|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|
T Consensus        19 ~~~~~i~~~d~~~-----~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           19 SMRSSIEIFNIRT-----RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI   92 (297)
T ss_dssp             CCCEEEEEEETTT-----TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred             CcceeEEEEeCCC-----CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence            3455666675432     23445667999999999999999999987 78999999999 8877666665 367899999


Q ss_pred             cCCCCEEEEEe--CCCcEEEE--ECCCCeeEEEecccCCceEEEEEecCCCEEE-EEECCCcEEEEECCC-CceEEEecc
Q 011457          226 SSKHTYMFSAG--DDKQVKCW--DLEQNKVIRSYHGHLSGVYCLGLHPTIDILL-TGGRDSVCRVWDIRT-KMQIFALAG  299 (485)
Q Consensus       226 s~~~~~l~s~~--~dg~V~iw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sg~~dg~i~iwd~~~-~~~~~~~~~  299 (485)
                      +|++++|++++  .++.+.||  ++.+++ ...+..+ ..+.+++|+|+++.|+ +++.++.+.+|+++. ......+..
T Consensus        93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~  170 (297)
T 2ojh_A           93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH  170 (297)
T ss_dssp             CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence            99999999998  33445555  555554 4444433 3489999999999777 788899999998642 334566667


Q ss_pred             CCccEEEEEEcCCCCEEEEEe-CCCCEEEEECC-CCeEEeEeccCCCceEEEEECCCCCEEEEEcCC------------C
Q 011457          300 HDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLR-YGKTMLTLTHHKKSVRAMALHPTEDCFASASAE------------N  365 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~------------~  365 (485)
                      +...+.++.|+|++++|++++ .++.+++|++. .+..+..+..+...+..+.|+|++.+|+.++.+            .
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  250 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR  250 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred             CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence            888999999999999888766 58999999986 566677777778889999999999998877654            2


Q ss_pred             EEEEECCCCceeeee-ccCCcccEEEEEeCCCC-eEEEEeCC
Q 011457          366 IKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEG-VLATGGDN  405 (485)
Q Consensus       366 i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~l~sg~~d  405 (485)
                      |.+||+.+++..... ...+...+..+.|+|++ .|++++.+
T Consensus       251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            999999887653322 22456678889999999 66666554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1.8e-22  Score=215.46  Aligned_cols=274  Identities=14%  Similarity=0.161  Sum_probs=197.1

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCceE-EEEcccc-----------------cCEEEEEEcCCCCEEEEEeCCC
Q 011457          178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK-LTLTGHI-----------------EQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~h~-----------------~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      +..+.|.  ++.+++++.|+ | +||+.+++.+ ..+..+.                 ..|.+++|+|+ .+++.+ .|+
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            4557787  66677777787 8 9999999873 3333333                 46999999999 655555 459


Q ss_pred             cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-----CceEEEeccCCcc-----------
Q 011457          240 QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-----KMQIFALAGHDNT-----------  303 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~~~~-----------  303 (485)
                      .|++||+.+++..... .+...+.+++|+|||+.|+++ .|+.|++||+.+     ++.......+...           
T Consensus       102 ~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          102 GLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             EEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            9999999988765544 466778999999999999985 689999999998     7766544433333           


Q ss_pred             ---EEEEEEcCCCCEEEEEe---------------------------------CCCCEEEEECCCCeEEeEec--cCCCc
Q 011457          304 ---VCSVFTRPTDPQVVTGS---------------------------------HDSTIKFWDLRYGKTMLTLT--HHKKS  345 (485)
Q Consensus       304 ---v~~l~~~~~~~~l~s~s---------------------------------~dg~I~iwd~~~~~~~~~~~--~~~~~  345 (485)
                         +.++.|+||+++|++++                                 .+..|++||+.+++......  .+...
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence               48899999999999987                                 44679999999887654432  35567


Q ss_pred             eEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeecc-CCcc---cEEEEEeCC--CC-eEEEEeCCCcEEEEe
Q 011457          346 VRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNMLS-QQKT---IINSMAVNE--EG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       346 v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~~-~~~~---~i~~~~~~~--~~-~l~sg~~dg~I~iwd  412 (485)
                      +.+++|+|+|+.|++++.+      .|.+||..+++....+.. ....   .+..+.|+|  +| +++++..+|.+++|+
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence            9999999999988876543      499999999844443322 2222   246789999  98 888888899999998


Q ss_pred             CC-CCcccccceeeeccCCCCCCccEEE-EEEccCCCEEEEEECC-C----cEEEecCCCCC
Q 011457          413 WK-SGHNFQQAQTIVQPGSLDSEAGIYA-LSYDVTGSRLVTCEAD-K----TIKMWREDETA  467 (485)
Q Consensus       413 ~~-~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s~~g~~L~s~~~D-g----~I~iW~~~~~~  467 (485)
                      +. ++.....+.        .+...+.. ++|+|+|+.|+.++.+ +    .|..|+..++.
T Consensus       340 ~~~~~~~~~~l~--------~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          340 YDTTGRLIRQVT--------KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EETTSCEEEECC--------CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             EECCCCEEEecC--------CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            76 444333322        24555766 7999999988776654 3    56666766544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=3.6e-21  Score=186.93  Aligned_cols=266  Identities=11%  Similarity=0.062  Sum_probs=206.2

Q ss_pred             eeecccCCCCcccccccc-------cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEE-EeCCCeEEEEE
Q 011457          132 IVSTSASSERNLSTSAIM-------ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCT-GSADRTIKIWD  203 (485)
Q Consensus       132 i~~~~~~~~~~~~~t~~~-------~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~t-gs~dg~I~iwd  203 (485)
                      +....++++++.+..+..       +..+..|+...    .+....+.. ...+.+++|+|+++++++ ...++.|.+||
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT----CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----CeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            445566777665544332       44567776543    445555543 345789999999996554 45579999999


Q ss_pred             CCCCceEEEEcccccC---------EEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC
Q 011457          204 VAKGTLKLTLTGHIEQ---------VRGLAVSSKHTYMFSAG--DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID  272 (485)
Q Consensus       204 ~~~~~~~~~~~~h~~~---------V~~l~~s~~~~~l~s~~--~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~  272 (485)
                      ..+++....+..+...         +.+++|+|+++++++++  .++.|.+||+.+++.+..+..+...+.+++|+|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            9999988887764422         78999999999888776  478999999999999998876666788999999999


Q ss_pred             EEEEEECCCcEEEEECCCCceEEEecc----CCccEEEEEEcCCCCEEEEEeCC-CCEEEEECCCCeEEeEeccCCCceE
Q 011457          273 ILLTGGRDSVCRVWDIRTKMQIFALAG----HDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLRYGKTMLTLTHHKKSVR  347 (485)
Q Consensus       273 ~l~sg~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~~~v~  347 (485)
                      .|++++.++.|.+||+.+++.+..+..    +...+..++|+|+++++++++.+ +.|.+||+.+++.+..+....  ..
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~  275 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SL  275 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cc
Confidence            999999999999999999988877764    45678899999999987776654 899999999999887776543  25


Q ss_pred             EEEECCCCCEEEEEc-CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC
Q 011457          348 AMALHPTEDCFASAS-AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG  406 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~-~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg  406 (485)
                      .++|+|++.++++++ .++ |.+||..+++.+..+..  ...+..++|++++ +|+++..++
T Consensus       276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred             eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence            799999999665554 344 99999999988877643  3467899999999 566665554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=4.6e-22  Score=191.71  Aligned_cols=270  Identities=14%  Similarity=0.072  Sum_probs=204.8

Q ss_pred             ccccccccCCCCCCCCCCCCCCcceEEEEe-cCCc-ceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEccc---
Q 011457          143 LSTSAIMERIPSKWPRPEWHAPWKCYRVIS-GHLG-WVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGH---  216 (485)
Q Consensus       143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~-~H~~-~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h---  216 (485)
                      +++++..+..+..|+...    .+....+. ++.. .+.+++|+|+++++ +++..++.|.+||+.+++....+...   
T Consensus         3 ~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEETTTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             EEEEcCCCCeEEEEECCC----CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            345556667777776532    45555555 2322 58899999999766 45556789999999999888776532   


Q ss_pred             --ccCEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          217 --IEQVRGLAVSSKHTYMFSAG------------DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       217 --~~~V~~l~~s~~~~~l~s~~------------~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                        ...+..++|+|++++|++++            .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe
Confidence              22677899999999999886            579999999999998888764 4567889999999988887  689


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC------------------------CEEEEECCCCeEE-e
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS------------------------TIKFWDLRYGKTM-L  337 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg------------------------~I~iwd~~~~~~~-~  337 (485)
                      |.+||+.+++.+..+..+.. ...+.|+|++..++..+.++                        .|.+||+.+++.. .
T Consensus       156 i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            99999999988877764431 01236788888665544332                        4689999988764 2


Q ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          338 TLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       338 ~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      .+..+...+.+++|+|++.+++++ .+.|.+||+.+++.+..+..  ...+.+++|++++ +|++++.++.|.+||+.++
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             ecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence            234455678899999999998888 45699999999988776543  2456789999999 7888888999999999998


Q ss_pred             cccccce
Q 011457          417 HNFQQAQ  423 (485)
Q Consensus       417 ~~~~~~~  423 (485)
                      +.+..+.
T Consensus       312 ~~~~~~~  318 (337)
T 1pby_B          312 EKKGQVD  318 (337)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            8766554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=5.7e-21  Score=185.62  Aligned_cols=263  Identities=12%  Similarity=0.159  Sum_probs=181.4

Q ss_pred             CCeEEEEEC--CCCceEE-EEcccccCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCe--eEEEecccCCceEEEEE
Q 011457          196 DRTIKIWDV--AKGTLKL-TLTGHIEQVRGLAVSSKHTYMFSAGD---DKQVKCWDLEQNK--VIRSYHGHLSGVYCLGL  267 (485)
Q Consensus       196 dg~I~iwd~--~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~  267 (485)
                      ++.|.+|++  .+++... ....+...+..++|+|+++ |++++.   ++.|.+||+.+++  .+..+..+...+..++|
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            456777765  4555433 3344567788899999999 665554   6899999997765  44554557778899999


Q ss_pred             ecCCCEEEEEE-CCCcEEEEECCC-Cc--eEEEecc---------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECC-CC
Q 011457          268 HPTIDILLTGG-RDSVCRVWDIRT-KM--QIFALAG---------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR-YG  333 (485)
Q Consensus       268 ~~~~~~l~sg~-~dg~i~iwd~~~-~~--~~~~~~~---------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~-~~  333 (485)
                      +|++++|++++ .++.|.+||+.. +.  .+..+..         +...+.+++|+|+++++++...++.|.+||+. ++
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence            99999888888 689999999963 22  2233321         12348899999999966666678899999998 45


Q ss_pred             eEEe--Eecc-CCCceEEEEECCCCCEEEEEc-CCC-EEEEECCC--Ccee--eeeccCC-----cccEEEEEeCCCC-e
Q 011457          334 KTML--TLTH-HKKSVRAMALHPTEDCFASAS-AEN-IKKFNLPK--GEFL--HNMLSQQ-----KTIINSMAVNEEG-V  398 (485)
Q Consensus       334 ~~~~--~~~~-~~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~--~~~~--~~~~~~~-----~~~i~~~~~~~~~-~  398 (485)
                      +...  .+.. ....+..++|+|+|+++++++ .++ +.+|++..  ++..  ..+....     ...+..++|+|+| +
T Consensus       174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred             cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence            4322  2222 234678899999999766654 344 89998864  4432  2221111     1458899999999 5


Q ss_pred             E-EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-CcEEEecCC
Q 011457          399 L-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-KTIKMWRED  464 (485)
Q Consensus       399 l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-g~I~iW~~~  464 (485)
                      | ++...++.|.+|++.....+.......     .+...+..++|+|+|++|++++.+ +.|.+|+++
T Consensus       254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          254 LYVSNRGYNTLAVFAVTADGHLTLIQQIS-----TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEETTTEEEEEEECGGGCEEEEEEEE-----CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEEECCCCcEEEeEEEe-----cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            5 556678999999997432222222211     123457789999999999888865 899999654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=4.5e-22  Score=212.79  Aligned_cols=321  Identities=8%  Similarity=-0.015  Sum_probs=218.3

Q ss_pred             ecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCc---ceEEEEEccCCCEEEEEeC---------CCeEEE
Q 011457          134 STSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLG---WVRSVAFDHSNTWFCTGSA---------DRTIKI  201 (485)
Q Consensus       134 ~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~---~V~~l~~sp~~~~l~tgs~---------dg~I~i  201 (485)
                      ...+++++.++.++ .+..+.+|+...    .+....+.+|..   .|.+++|||||++|++++.         |+.|++
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIET----GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSS----CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCC----CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence            44567777665554 477888887643    344555555554   4999999999999999876         789999


Q ss_pred             EECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cccCCce-----------------E
Q 011457          202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSGV-----------------Y  263 (485)
Q Consensus       202 wd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~~~v-----------------~  263 (485)
                      ||+.+++.+.... ....+..++|+|||++|+.+. |+.|++||+.+++..+.. .++...|                 .
T Consensus        95 ~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           95 YDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             EETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             EECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            9999887621011 125688999999999999885 789999999988776543 2333322                 4


Q ss_pred             EEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCceE--EE------eccCC
Q 011457          264 CLGLHPTIDILLTGGRDS----------------------------------VCRVWDIRTKMQI--FA------LAGHD  301 (485)
Q Consensus       264 ~l~~~~~~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~--~~------~~~~~  301 (485)
                      +++|+|||+.|++++.|.                                  .|++||+.+++..  ..      +.+|.
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            899999999999988652                                  7889999987642  12      33578


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCC----CEEEEE----CCCCeEEeEe----ccCCCceE-----EEEECCCCCEEEE--Ec
Q 011457          302 NTVCSVFTRPTDPQVVTGSHDS----TIKFWD----LRYGKTMLTL----THHKKSVR-----AMALHPTEDCFAS--AS  362 (485)
Q Consensus       302 ~~v~~l~~~~~~~~l~s~s~dg----~I~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~~p~~~~l~~--~~  362 (485)
                      ..+.+++|+||+.++++....+    .|.+||    +.+++....+    ..+...+.     .+.|+|+|..++.  ..
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  332 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD  332 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence            8899999999987666644332    488999    8777665544    35566565     7899999985544  33


Q ss_pred             CCC---EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeC-----CCcEEEEeCCC--Ccc-cccceeeeccCCC
Q 011457          363 AEN---IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGD-----NGSLWFWDWKS--GHN-FQQAQTIVQPGSL  431 (485)
Q Consensus       363 ~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~-----dg~I~iwd~~~--~~~-~~~~~~~~~~~~~  431 (485)
                      .++   |.+|++..++ ...+ ..+...+..+.+.+++.|+..+.     ++.+++|.+..  +.. ...+.    ....
T Consensus       333 ~~g~~~l~~~~~~~~~-~~~l-t~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~----~~~~  406 (719)
T 1z68_A          333 KDGYKHIHYIKDTVEN-AIQI-TSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT----CHLR  406 (719)
T ss_dssp             TTSCEEEEEESSCSTT-CEEC-SCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS----TTTT
T ss_pred             cCCceEEEEEECCCCc-eEec-ccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc----CccC
Confidence            333   8888887776 3333 33444455555553335555544     48888888754  311 11111    0011


Q ss_pred             CCCccEEEEEEccCCCEEEEEE-CC--CcEEEecCCCCC
Q 011457          432 DSEAGIYALSYDVTGSRLVTCE-AD--KTIKMWREDETA  467 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~~-~D--g~I~iW~~~~~~  467 (485)
                      ++...+..+.|+++|++|+..+ .+  ..+.+|++.++.
T Consensus       407 ~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          407 KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             TTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            2455688899999998877543 33  468899886654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=4.8e-22  Score=212.56  Aligned_cols=273  Identities=9%  Similarity=0.088  Sum_probs=198.4

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc---CEEEEEEcCCCCEEEEEeC---------CCcEEEEECC
Q 011457          180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE---QVRGLAVSSKHTYMFSAGD---------DKQVKCWDLE  247 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~---------dg~V~iwd~~  247 (485)
                      +++|+|++++++++ .|+.|++||+.+++....+.+|..   .+.+++|+|||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            67899999765554 699999999999998877776644   4899999999999998876         7899999999


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-ccCCccE-----------------EEEEE
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-AGHDNTV-----------------CSVFT  309 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~l~~  309 (485)
                      +++.+.... ....+..++|+|||+.|+++. ++.|++||+.+++..... .++...+                 .++.|
T Consensus        99 ~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w  176 (719)
T 1z68_A           99 NGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW  176 (719)
T ss_dssp             TTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred             CCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence            987632111 235688999999999999886 789999999888765432 2333222                 48999


Q ss_pred             cCCCCEEEEEeCCC----------------------------------CEEEEECCCCeEE--------eEeccCCCceE
Q 011457          310 RPTDPQVVTGSHDS----------------------------------TIKFWDLRYGKTM--------LTLTHHKKSVR  347 (485)
Q Consensus       310 ~~~~~~l~s~s~dg----------------------------------~I~iwd~~~~~~~--------~~~~~~~~~v~  347 (485)
                      +|||++|++++.|.                                  .|++||+.+++..        ..+..+...+.
T Consensus       177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (719)
T 1z68_A          177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS  256 (719)
T ss_dssp             CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence            99999999887652                                  7889999887642        12335677899


Q ss_pred             EEEECCCCCEEEEEcCC-C----EEEEE----CCCCceeeeec---cCCcccEE-----EEEeCCCC-eEE--EEeCCC-
Q 011457          348 AMALHPTEDCFASASAE-N----IKKFN----LPKGEFLHNML---SQQKTIIN-----SMAVNEEG-VLA--TGGDNG-  406 (485)
Q Consensus       348 ~l~~~p~~~~l~~~~~~-~----i~i~d----~~~~~~~~~~~---~~~~~~i~-----~~~~~~~~-~l~--sg~~dg-  406 (485)
                      +++|+||++++++.... .    |.+||    ..+++....+.   ..+...+.     .+.|+|+| .|+  +...+| 
T Consensus       257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~  336 (719)
T 1z68_A          257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY  336 (719)
T ss_dssp             EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred             EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence            99999998777664322 1    88899    77776543321   34555555     78899999 443  344555 


Q ss_pred             -cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-----CcEEEecCCC
Q 011457          407 -SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-----KTIKMWREDE  465 (485)
Q Consensus       407 -~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~~  465 (485)
                       .|++||+.+++. ..+.        .+...+..+.+. +++.|+..+.+     +.+++|.++.
T Consensus       337 ~~l~~~~~~~~~~-~~lt--------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          337 KHIHYIKDTVENA-IQIT--------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEEEESSCSTTC-EECS--------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             eEEEEEECCCCce-Eecc--------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence             577777766542 1111        234457777777 88888877765     8899998764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=1.3e-20  Score=185.81  Aligned_cols=298  Identities=11%  Similarity=0.034  Sum_probs=204.3

Q ss_pred             ceEEEEecCCcceEE-----EEEccCCCEEEEEeC-CC--eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC
Q 011457          166 KCYRVISGHLGWVRS-----VAFDHSNTWFCTGSA-DR--TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD  237 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~-----l~~sp~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  237 (485)
                      ...+.+..|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+..+.|+|+++.|+.++.
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~  100 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD  100 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence            345566667766665     889999999999887 66  4889999999887777666666667789999999999999


Q ss_pred             CCcEEEEECCCCeeEEEecccCCceEEEE--EecCCCEEEEE----------------------ECCCcEEEEECCCCce
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLG--LHPTIDILLTG----------------------GRDSVCRVWDIRTKMQ  293 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~--~~~~~~~l~sg----------------------~~dg~i~iwd~~~~~~  293 (485)
                      ++.|++||+.+++....+..+...+....  +++++.+++..                      ..+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            99999999999987776666666554444  48899888743                      2457899999998865


Q ss_pred             EEEeccCCccEEEEEEcC-CCCEEEEEeCC------CCEEEEECCCCeEEeEeccCC--CceEEEEECCCCCEEEEEcCC
Q 011457          294 IFALAGHDNTVCSVFTRP-TDPQVVTGSHD------STIKFWDLRYGKTMLTLTHHK--KSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       294 ~~~~~~~~~~v~~l~~~~-~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~--~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      . .+..+...+..+.|+| +++.|+....+      ..|.++|+..++. ..+..+.  ..+..+.|+|+|+.|+..+..
T Consensus       181 ~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (388)
T 3pe7_A          181 T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL  258 (388)
T ss_dssp             E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence            4 4445677889999999 99988877764      3788888775543 3343333  357889999999977554321


Q ss_pred             ----C--EEEEECCCCceeeeec-cCCccc---EEEEEeCCCC-eEEEE---------eCCCcEEEEeCCCCccccccee
Q 011457          365 ----N--IKKFNLPKGEFLHNML-SQQKTI---INSMAVNEEG-VLATG---------GDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       365 ----~--i~i~d~~~~~~~~~~~-~~~~~~---i~~~~~~~~~-~l~sg---------~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                          .  |++||+.+++...... ......   .....|+|+| .|+..         ..+..|++||+.+++.......
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (388)
T 3pe7_A          259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH  338 (388)
T ss_dssp             TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence                2  9999999887432211 110000   1112578888 44432         4567899999998764321111


Q ss_pred             eeccC--CCCCCccEEEEEEccCCCEEEEEE-CCCcEEEecCCC
Q 011457          425 IVQPG--SLDSEAGIYALSYDVTGSRLVTCE-ADKTIKMWREDE  465 (485)
Q Consensus       425 ~~~~~--~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I~iW~~~~  465 (485)
                      .....  ..+....+.+++|+|||++|+.++ .+|...||.++-
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            00000  000011467789999999888766 577777876643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=9.8e-20  Score=177.95  Aligned_cols=259  Identities=11%  Similarity=0.127  Sum_probs=180.8

Q ss_pred             CCcceEEEEEccCCCEEEEEeCC----CeEEEEECCC--Cce--EEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSAD----RTIKIWDVAK--GTL--KLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCW  244 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~d----g~I~iwd~~~--~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iw  244 (485)
                      |...+..++|+|++++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            77888899999999999999886    7999998865  443  3334445566778888  788777776 57899999


Q ss_pred             ECCCCeeEEEe------cc--------cCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCce------E-------EE
Q 011457          245 DLEQNKVIRSY------HG--------HLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQ------I-------FA  296 (485)
Q Consensus       245 d~~~~~~~~~~------~~--------h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~------~-------~~  296 (485)
                      ++.....+..+      .+        +...+.+++|+|+|++|++++. ++.|.+|++.....      +       ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754332211      11        1234688999999997766654 88999999875431      1       11


Q ss_pred             eccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeE--EeEe---ccCCCceEEEEECCCCCEEEEEcCC--C-EE
Q 011457          297 LAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKT--MLTL---THHKKSVRAMALHPTEDCFASASAE--N-IK  367 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~--~~~~---~~~~~~v~~l~~~p~~~~l~~~~~~--~-i~  367 (485)
                      ...+......++|+|+++++++++ .++.|.+||+.+++.  +..+   ..+......++|+|+|++|+++..+  + +.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            223456688999999999887777 689999999987754  2222   2233457899999999988766554  4 99


Q ss_pred             EEECC--CCc--eeeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeC--CCCcccccceeeeccCCCCCCccEEE
Q 011457          368 KFNLP--KGE--FLHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDW--KSGHNFQQAQTIVQPGSLDSEAGIYA  439 (485)
Q Consensus       368 i~d~~--~~~--~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~V~~  439 (485)
                      +|++.  +++  .+..+. . ...+..++|+|++ +|++++ .++.|.+|++  .+++........       +...+.|
T Consensus       286 v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~-------~~~~p~~  356 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI-------KVDKPVC  356 (361)
T ss_dssp             EEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE-------ECSSEEE
T ss_pred             EEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceee-------eCCCCeE
Confidence            99985  444  233332 2 4567889999999 677776 6789999654  466543332211       2335788


Q ss_pred             EEEc
Q 011457          440 LSYD  443 (485)
Q Consensus       440 l~~s  443 (485)
                      +.|.
T Consensus       357 v~~~  360 (361)
T 3scy_A          357 LKFV  360 (361)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2.5e-19  Score=175.03  Aligned_cols=270  Identities=10%  Similarity=0.131  Sum_probs=184.2

Q ss_pred             CCCEEEEEe----CCCeEEEEEC--CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC----CcEEEEECCC--Ce--e
Q 011457          186 SNTWFCTGS----ADRTIKIWDV--AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD----KQVKCWDLEQ--NK--V  251 (485)
Q Consensus       186 ~~~~l~tgs----~dg~I~iwd~--~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~V~iwd~~~--~~--~  251 (485)
                      ...+++.|+    .++.|.+|++  .+++.......+...+..++|+|++++|++++.+    +.|.+|++..  ++  .
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~   91 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL   91 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence            344566664    3568999876  4565443322267778889999999999999886    7999998865  43  3


Q ss_pred             EEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEEEe------cc--------CCccEEEEEEcCCCCEE
Q 011457          252 IRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIFAL------AG--------HDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~------~~--------~~~~v~~l~~~~~~~~l  316 (485)
                      +.....+......+++  ++++|++++ .++.|.+|++.....+..+      .+        +...+.+++|+|+++++
T Consensus        92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence            3344445566778888  778777776 5789999999754332111      11        12345889999999977


Q ss_pred             EEEe-CCCCEEEEECCCCeE-------------EeEeccCCCceEEEEECCCCCEEEEEcC-CC-EEEEECCCCce--ee
Q 011457          317 VTGS-HDSTIKFWDLRYGKT-------------MLTLTHHKKSVRAMALHPTEDCFASASA-EN-IKKFNLPKGEF--LH  378 (485)
Q Consensus       317 ~s~s-~dg~I~iwd~~~~~~-------------~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~-i~i~d~~~~~~--~~  378 (485)
                      ++++ .++.|.+|++.....             ..........+..++|+|+|+++++++. ++ |.+|++.+++.  +.
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~  249 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ  249 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence            6655 478999998875431             1222334556889999999998777663 44 99999987754  22


Q ss_pred             ee--ccCCcccEEEEEeCCCC-eEEEEeC--CCcEEEEeCC--CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457          379 NM--LSQQKTIINSMAVNEEG-VLATGGD--NGSLWFWDWK--SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       379 ~~--~~~~~~~i~~~~~~~~~-~l~sg~~--dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                      .+  ...+......++|+|++ +|+++..  ++.|.+|++.  +++. .......      ....+.+++|+|+|++|++
T Consensus       250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-~~~~~~~------~g~~~~~~~~spdg~~l~~  322 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-TKVGYQL------TGIHPRNFIITPNGKYLLV  322 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE-EEEEEEE------CSSCCCEEEECTTSCEEEE
T ss_pred             EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE-EEeeEec------CCCCCceEEECCCCCEEEE
Confidence            22  12223456899999999 6656555  4899999996  3432 1222111      1235678999999999998


Q ss_pred             EE-CCCcEEEecCC
Q 011457          452 CE-ADKTIKMWRED  464 (485)
Q Consensus       452 ~~-~Dg~I~iW~~~  464 (485)
                      ++ .++.|.+|+++
T Consensus       323 ~~~~~~~v~v~~~d  336 (361)
T 3scy_A          323 ACRDTNVIQIFERD  336 (361)
T ss_dssp             EETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEEE
Confidence            88 67999997665

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=1.2e-19  Score=176.20  Aligned_cols=245  Identities=11%  Similarity=0.108  Sum_probs=173.1

Q ss_pred             cCCcceEEEEEccCCCEEEEEeC---CCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSA---DRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDL  246 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~---dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~  246 (485)
                      .+...+..++|+|+|+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            4567788999999999 555544   6899999997776  3444455777889999999999998887 6899999999


Q ss_pred             CC-C--eeEEEecc---------cCCceEEEEEecCCCEEEEEECCCcEEEEECC-CCceEE--Eecc-CCccEEEEEEc
Q 011457          247 EQ-N--KVIRSYHG---------HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR-TKMQIF--ALAG-HDNTVCSVFTR  310 (485)
Q Consensus       247 ~~-~--~~~~~~~~---------h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v~~l~~~  310 (485)
                      .. +  +.+..+..         +...+.+++|+|+++++++...++.|.+||+. +++...  .+.. .......++|+
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            63 2  23333321         12348899999999966666678899999998 454322  2222 23367889999


Q ss_pred             CCCCEEEE-EeCCCCEEEEECCC--CeE--EeEeccCC------CceEEEEECCCCCEEEEE-cCCC-EEEEECCCC---
Q 011457          311 PTDPQVVT-GSHDSTIKFWDLRY--GKT--MLTLTHHK------KSVRAMALHPTEDCFASA-SAEN-IKKFNLPKG---  374 (485)
Q Consensus       311 ~~~~~l~s-~s~dg~I~iwd~~~--~~~--~~~~~~~~------~~v~~l~~~p~~~~l~~~-~~~~-i~i~d~~~~---  374 (485)
                      |+++++++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|+|++++++ ..++ |.+|++...   
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~  275 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL  275 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE
Confidence            99996665 55688999999874  443  22222222      358899999999977544 3344 999998732   


Q ss_pred             ceeeeeccCCcccEEEEEeCCCC-eEEEEeC-CCcEEEE--eCCCCccc
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEG-VLATGGD-NGSLWFW--DWKSGHNF  419 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-dg~I~iw--d~~~~~~~  419 (485)
                      +.+..+ ..+...+..++|+|++ +|++++. ++.|.+|  |..+|+..
T Consensus       276 ~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          276 TLIQQI-STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEEE-ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEeEEE-ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            333332 3334567899999999 6777765 4899999  55566544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=5.8e-20  Score=184.21  Aligned_cols=198  Identities=11%  Similarity=0.022  Sum_probs=151.6

Q ss_pred             cCCcceEEEEEccCCCEEE----EEeCCCeEEEEECCCC--------c---eEEEEcccccCEEEEEEcCC-CCEEEEEe
Q 011457          173 GHLGWVRSVAFDHSNTWFC----TGSADRTIKIWDVAKG--------T---LKLTLTGHIEQVRGLAVSSK-HTYMFSAG  236 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~----tgs~dg~I~iwd~~~~--------~---~~~~~~~h~~~V~~l~~s~~-~~~l~s~~  236 (485)
                      .|.+.|++++|+|++++|+    +|+.|+.|+|||+.++        +   ....+.+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4678899999999999999    7889999999998654        1   24556779999999999998 78999999


Q ss_pred             CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC-------CccEEEEEE
Q 011457          237 DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH-------DNTVCSVFT  309 (485)
Q Consensus       237 ~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~  309 (485)
                      .||+|++||++++..+....+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..|       ...|.++.|
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w  248 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW  248 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence            99999999999998777777899999999999999999999999999999998 5556555433       238999999


Q ss_pred             cCCCCEEEE-EeCCCC------EEEEECCCCe-----EEeEec-------cCCCceEEEEECCCCCEEEEEcCCC--EEE
Q 011457          310 RPTDPQVVT-GSHDST------IKFWDLRYGK-----TMLTLT-------HHKKSVRAMALHPTEDCFASASAEN--IKK  368 (485)
Q Consensus       310 ~~~~~~l~s-~s~dg~------I~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~~p~~~~l~~~~~~~--i~i  368 (485)
                      ++++.++++ ...||.      +++||++..+     ....+.       ....+...+.+.++..++++++...  +.+
T Consensus       249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v  328 (434)
T 2oit_A          249 IGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI  328 (434)
T ss_dssp             EETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred             ecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence            998877654 334433      8999998642     111111       1122233344446767776665543  555


Q ss_pred             EEC
Q 011457          369 FNL  371 (485)
Q Consensus       369 ~d~  371 (485)
                      +..
T Consensus       329 l~~  331 (434)
T 2oit_A          329 LAR  331 (434)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1.8e-19  Score=174.41  Aligned_cols=268  Identities=9%  Similarity=0.040  Sum_probs=192.7

Q ss_pred             ccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCC-cceEEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEE
Q 011457          136 SASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHL-GWVRSVAFDHSNTWFC-TGSADRTIKIWDVAKGTLKLTL  213 (485)
Q Consensus       136 ~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~~~~~~~  213 (485)
                      ++++.+.++++...+..+.+|+...    .+....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....+
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTT----TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCC----CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            4556677778888888888887643    45666666443 3688999999998654 5556899999999999888777


Q ss_pred             ccc------ccCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCee---EEEecccCCceEEEEEecCCC
Q 011457          214 TGH------IEQVRGLAVSSKHTYMFSAGDD------------KQVKCWDLEQNKV---IRSYHGHLSGVYCLGLHPTID  272 (485)
Q Consensus       214 ~~h------~~~V~~l~~s~~~~~l~s~~~d------------g~V~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~  272 (485)
                      ..+      ...+..++|+|++++|++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~  160 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS  160 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc
Confidence            632      2337889999999999998865            8999999988543   34444 344688999999999


Q ss_pred             EEEEEECCCcEEEEECCCCceEEEeccCCc------------------------cEEEEEEcCCCC-----------EEE
Q 011457          273 ILLTGGRDSVCRVWDIRTKMQIFALAGHDN------------------------TVCSVFTRPTDP-----------QVV  317 (485)
Q Consensus       273 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~v~~l~~~~~~~-----------~l~  317 (485)
                       +++++.  .|.+||+.+++.+..+..+..                        ....+.+++++.           ++.
T Consensus       161 -l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  237 (349)
T 1jmx_B          161 -LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  237 (349)
T ss_dssp             -EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             -EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence             565543  499999999988877653320                        234455554432           111


Q ss_pred             EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457          318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE  396 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  396 (485)
                      ....++.+++|++         ......+..++|+| ++.+++++ .+.|.+||+.+++.+..+...  ..+..++++++
T Consensus       238 ~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~d  305 (349)
T 1jmx_B          238 VDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKK  305 (349)
T ss_dssp             EETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSS
T ss_pred             EeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCC--CCccceEECCC
Confidence            2233344444443         22456788999999 99999888 556999999999887765433  34678999999


Q ss_pred             C-eEEEEeCCCcEEEEeCCCCcccccce
Q 011457          397 G-VLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       397 ~-~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      + +|++++.++.|.+||+.+++.+..+.
T Consensus       306 g~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          306 GDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             SSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEecCCCeEEEEeccccceeeeee
Confidence            8 78888889999999999887665543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=2.2e-19  Score=176.02  Aligned_cols=272  Identities=10%  Similarity=0.089  Sum_probs=184.3

Q ss_pred             EEEEEeCC--CeEEEEEC--CCCceEEE--Ec-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEeccc-C
Q 011457          189 WFCTGSAD--RTIKIWDV--AKGTLKLT--LT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE-QNKVIRSYHGH-L  259 (485)
Q Consensus       189 ~l~tgs~d--g~I~iwd~--~~~~~~~~--~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~-~~~~~~~~~~h-~  259 (485)
                      ++++|+..  +.|.+|++  .++++...  .. .....+..++|+|++++|++++.+ .|.+|++. +++........ .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            35566553  56887765  45654322  11 233467889999999999999888 99999997 77765433211 1


Q ss_pred             CceEEEEEecCCCE--EEEEE-------------CCCcEEEEECC-CCceEEEec----cCCccEEEEEEcCCCCEEEEE
Q 011457          260 SGVYCLGLHPTIDI--LLTGG-------------RDSVCRVWDIR-TKMQIFALA----GHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       260 ~~v~~l~~~~~~~~--l~sg~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      +.+.+++|+|+|++  +++++             .+|.+.+|++. .++....+.    .+...+.++.|+|++++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            23556899999994  44543             68999999997 465544333    245679999999999988877


Q ss_pred             eC-CCCEEEEECC-CCeEE--eEec--cCCCceEEEEECCCCCEEEEEcC-CC-EEEEECC--CCceee---ee--ccC-
Q 011457          320 SH-DSTIKFWDLR-YGKTM--LTLT--HHKKSVRAMALHPTEDCFASASA-EN-IKKFNLP--KGEFLH---NM--LSQ-  383 (485)
Q Consensus       320 s~-dg~I~iwd~~-~~~~~--~~~~--~~~~~v~~l~~~p~~~~l~~~~~-~~-i~i~d~~--~~~~~~---~~--~~~-  383 (485)
                      .. ++.|++||+. +++..  ..+.  .+...++.++|+|+|+++++++. ++ +.+|++.  +++...   .+  ... 
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  242 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence            64 6799999998 67643  2333  23567899999999998887765 33 8888764  565421   11  111 


Q ss_pred             ---Ccc------cEEEEE-eCCCC-eEEEEeCC-C-----cEEEEeCC-CCcccccceeeeccCCCCCCccEEEEEEcc-
Q 011457          384 ---QKT------IINSMA-VNEEG-VLATGGDN-G-----SLWFWDWK-SGHNFQQAQTIVQPGSLDSEAGIYALSYDV-  444 (485)
Q Consensus       384 ---~~~------~i~~~~-~~~~~-~l~sg~~d-g-----~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-  444 (485)
                         +..      .+..++ |+|+| +|+++..+ +     .|.+|++. +++.........     .+...+..++|+| 
T Consensus       243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~-----~~~~~~~~~a~sp~  317 (365)
T 1jof_A          243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-----TPTSGGHSNAVSPC  317 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-----CSSCCTTCCCEEEC
T ss_pred             cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee-----cCCCCcccceecCC
Confidence               111      578899 99999 66665532 2     89999996 554322111111     0122345688999 


Q ss_pred             --CCCEEEEEECC-CcEEEecCCCC
Q 011457          445 --TGSRLVTCEAD-KTIKMWREDET  466 (485)
Q Consensus       445 --~g~~L~s~~~D-g~I~iW~~~~~  466 (485)
                        +|++|++++.+ +.|.+|+++..
T Consensus       318 ~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          318 PWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CcCCCEEEEEEcCCCeEEEEEEchh
Confidence              89999999865 89999998765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=6e-20  Score=191.45  Aligned_cols=266  Identities=10%  Similarity=0.006  Sum_probs=197.2

Q ss_pred             cceeecccCCCCcccccccc-cCCCCCCCCCCCCCCcceEEEEecCC-cceEEEEEccCCCEEEEEeC---CCeEEEEEC
Q 011457          130 SAIVSTSASSERNLSTSAIM-ERIPSKWPRPEWHAPWKCYRVISGHL-GWVRSVAFDHSNTWFCTGSA---DRTIKIWDV  204 (485)
Q Consensus       130 ~~i~~~~~~~~~~~~~t~~~-~~~~~~w~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp~~~~l~tgs~---dg~I~iwd~  204 (485)
                      ..|.++.+++++..++..+. +..+.+|...     -...+.+..|. ..|.+++|+|| +++++++.   +....||.+
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-----~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-----GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEE-----TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEc-----CCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            35788889999998888765 8888899742     23344555555 68999999999 77777765   455566554


Q ss_pred             CC---CceEEEEcccccCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457          205 AK---GTLKLTLTGHIEQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       205 ~~---~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      ..   +... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+ .  .+++|+|||++|++++.+
T Consensus        96 ~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~  170 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFF  170 (582)
T ss_dssp             ETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEE
T ss_pred             eccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEc
Confidence            32   3322 44332 23446688888753 333344455669999988776655433 3  789999999999988877


Q ss_pred             ----CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC--CEEEEECCCCeEEeEeccCCCceEEEE----
Q 011457          281 ----SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS--TIKFWDLRYGKTMLTLTHHKKSVRAMA----  350 (485)
Q Consensus       281 ----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~----  350 (485)
                          +.|++||+.+++.. .+..|...+..++|+|||++|+++..++  .|++||+.+++.. .+..+...+..+.    
T Consensus       171 ~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          171 GGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             ETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             CCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence                78999999988755 6677888999999999999999888888  8999999998887 7777776676667    


Q ss_pred             ----ECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCC---cEEEEeCCC
Q 011457          351 ----LHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNG---SLWFWDWKS  415 (485)
Q Consensus       351 ----~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg---~I~iwd~~~  415 (485)
                          |+|||.++++++.++ +.+|++  ++...    .....+.+++++ ++ ++++++.+.   .+++||..+
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFID--GERVE----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEET--TEEEC----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence                999998888888777 999999  65543    233568889999 77 777777664   477777653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.83  E-value=1.9e-19  Score=177.61  Aligned_cols=281  Identities=13%  Similarity=0.038  Sum_probs=187.6

Q ss_pred             cceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 011457          176 GWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI  252 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~  252 (485)
                      ..+.+++|+|+|++|+....+   ..|.+||+.+++......++......+.|+|++++|+.++.++.|.+||+.+++..
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            347888999999998877543   47899999888765443333322334789999999999999999999999988766


Q ss_pred             EEecccCCceEE-------------------EEEecCCCEEEEE-----ECCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457          253 RSYHGHLSGVYC-------------------LGLHPTIDILLTG-----GRDSVCRVWDIRTKMQIFALAGHDNTVCSVF  308 (485)
Q Consensus       253 ~~~~~h~~~v~~-------------------l~~~~~~~~l~sg-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  308 (485)
                      ..+..+......                   +.|+|+++.++.+     ..+..|.+||+.+++..... .+...+..+.
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~  194 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI  194 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence            655544442222                   3456777665544     45678999999988765544 4677889999


Q ss_pred             EcC-CCCEEEEEeCC------CCEEEEECCCCeEEeEeccC-CCceEEEEECCCCCEEEEEcCC----C--EEEEECCCC
Q 011457          309 TRP-TDPQVVTGSHD------STIKFWDLRYGKTMLTLTHH-KKSVRAMALHPTEDCFASASAE----N--IKKFNLPKG  374 (485)
Q Consensus       309 ~~~-~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~----~--i~i~d~~~~  374 (485)
                      |+| ++..|+..+.+      ..|.+||+..++........ ...+..+.|+|+|+.|+..+.+    .  |++||+.++
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            999 78777766554      36888998765433322221 2358889999999977665432    3  999999888


Q ss_pred             ceeeeeccCCcccEEEEEeCC-CC-eEEEEe----------------CCCcEEEEeCCCCcccccceeeeccCCC-----
Q 011457          375 EFLHNMLSQQKTIINSMAVNE-EG-VLATGG----------------DNGSLWFWDWKSGHNFQQAQTIVQPGSL-----  431 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~-~~-~l~sg~----------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~-----  431 (485)
                      +..... ... . .. ..|++ ++ ++++++                .++.|++||+.+++.. .+...  ....     
T Consensus       275 ~~~~l~-~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~  347 (396)
T 3c5m_A          275 ENEEVM-VMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH--STSWDVLDG  347 (396)
T ss_dssp             CEEEEE-ECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC--CCCCCCBTT
T ss_pred             CeEEee-eCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC--CCccccccc
Confidence            654322 111 1 23 78888 88 666544                3478999999887642 22110  0000     


Q ss_pred             CCCccEEEEEEccCCCEEEEEEC-CCcEEEecCC
Q 011457          432 DSEAGIYALSYDVTGSRLVTCEA-DKTIKMWRED  464 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~  464 (485)
                      +....+..++|+|+|++|+.++. ++...||.++
T Consensus       348 ~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          348 DRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            00012456789999999887764 5665566544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=2.2e-18  Score=168.84  Aligned_cols=242  Identities=12%  Similarity=0.084  Sum_probs=173.1

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECC-CCceEEEEccc-ccCEEEEEEcCCCCE--EEEEe-------------
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA-KGTLKLTLTGH-IEQVRGLAVSSKHTY--MFSAG-------------  236 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h-~~~V~~l~~s~~~~~--l~s~~-------------  236 (485)
                      +...+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            34568899999999999999888 99999997 77765433211 123556899999994  45553             


Q ss_pred             CCCcEEEEECC-CCeeEEEec----ccCCceEEEEEecCCCEEEEEEC-CCcEEEEECC-CCceE--EEec--cCCccEE
Q 011457          237 DDKQVKCWDLE-QNKVIRSYH----GHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIR-TKMQI--FALA--GHDNTVC  305 (485)
Q Consensus       237 ~dg~V~iwd~~-~~~~~~~~~----~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~-~~~~~--~~~~--~~~~~v~  305 (485)
                      .+|.+.+|++. +++....+.    .+...+.+++|+|+|++|++++. ++.|++||+. +++..  ..+.  .|...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            68999999997 466554443    24567999999999998887764 6799999998 67643  2333  2356799


Q ss_pred             EEEEcCCCCEEEEEeC-CCCEEEEECC--CCeEE---eEec---c----CCC------ceEEEE-ECCCCCEEEEEcC--
Q 011457          306 SVFTRPTDPQVVTGSH-DSTIKFWDLR--YGKTM---LTLT---H----HKK------SVRAMA-LHPTEDCFASASA--  363 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~-dg~I~iwd~~--~~~~~---~~~~---~----~~~------~v~~l~-~~p~~~~l~~~~~--  363 (485)
                      .++|+|+++++++++. ++.|.+|++.  +++..   ..+.   .    +..      .+..++ |+|+|++|++++.  
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            9999999999988775 6899999765  45542   1221   1    111      488999 9999998876643  


Q ss_pred             C-----CEEEEECC-CCceeee--eccCCcccEEEEEeCC---CC-eEEEEeC-CCcEEEEeCCCC
Q 011457          364 E-----NIKKFNLP-KGEFLHN--MLSQQKTIINSMAVNE---EG-VLATGGD-NGSLWFWDWKSG  416 (485)
Q Consensus       364 ~-----~i~i~d~~-~~~~~~~--~~~~~~~~i~~~~~~~---~~-~l~sg~~-dg~I~iwd~~~~  416 (485)
                      +     .|.+|++. +++....  ...........++++|   ++ +|++++. ++.|.+|++...
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            3     59999986 5654321  1222333455678888   67 7877776 489999998765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=5.6e-19  Score=189.38  Aligned_cols=265  Identities=8%  Similarity=0.064  Sum_probs=184.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccC-----EEEEEEcCCCCEEEEEeCC---------CcE
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-----VRGLAVSSKHTYMFSAGDD---------KQV  241 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-----V~~l~~s~~~~~l~s~~~d---------g~V  241 (485)
                      ....+++|+|++++++++  |+.|++||+.+++....+.+|...     ...+.|||||++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            345689999999999886  899999999999988888877543     2347899999999998876         566


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-ccCCccE----------------
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-AGHDNTV----------------  304 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v----------------  304 (485)
                      .+||+.+++.. .+..|...+...+|+|||+.|+.+. |+.|++||+.+++..... .++...+                
T Consensus        95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            79999998865 4666778899999999999998884 689999999887754322 2333222                


Q ss_pred             -EEEEEcCCCCEEEEEeCCC------------------------------------CEEEEECCC---Ce--EEeEec--
Q 011457          305 -CSVFTRPTDPQVVTGSHDS------------------------------------TIKFWDLRY---GK--TMLTLT--  340 (485)
Q Consensus       305 -~~l~~~~~~~~l~s~s~dg------------------------------------~I~iwd~~~---~~--~~~~~~--  340 (485)
                       ..+.|+|||++|+.++.|.                                    .|++||+.+   ++  ....+.  
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             3489999999998875332                                    488899988   63  223333  


Q ss_pred             ----cCCCceEEEEECCCCCEEEEEcCC-----CEEEEECCCCc----ee--eee-ccCCcccEE-----EEEeCCCC-e
Q 011457          341 ----HHKKSVRAMALHPTEDCFASASAE-----NIKKFNLPKGE----FL--HNM-LSQQKTIIN-----SMAVNEEG-V  398 (485)
Q Consensus       341 ----~~~~~v~~l~~~p~~~~l~~~~~~-----~i~i~d~~~~~----~~--~~~-~~~~~~~i~-----~~~~~~~~-~  398 (485)
                          .+...+..++|+|||+.++.....     .|.+||+.+++    +.  ..+ ...+...+.     ...|+||| .
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~  332 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS  332 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence                266678999999999966654322     28999998887    21  111 123333333     67899999 5


Q ss_pred             EE-EEe-CCC--cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          399 LA-TGG-DNG--SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       399 l~-sg~-~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      |+ ..+ .+|  .|++||..++......         .....|..+.+ ++++.|+..+.
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT---------~g~~~v~~~~~-~d~~~i~f~~~  382 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKDCTFIT---------KGTWEVIGIEA-LTSDYLYYISN  382 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSSCEESC---------CSSSCEEEEEE-ECSSEEEEEES
T ss_pred             EEEEEEcCCCceEEEEEECCCCceEecc---------cCCEEEEEEEE-EeCCEEEEEEe
Confidence            44 554 344  6888888776543221         12334555432 33666555444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1.2e-17  Score=161.14  Aligned_cols=239  Identities=16%  Similarity=0.198  Sum_probs=187.7

Q ss_pred             CcceEEEEEccCCCEEEEEeCC------------------------CeEEEEECCCCceEEEEc-ccccCEEEEEEcCCC
Q 011457          175 LGWVRSVAFDHSNTWFCTGSAD------------------------RTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSKH  229 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~d------------------------g~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~  229 (485)
                      .+.|.+|+++|+|+++++...+                        +.|.+||..+++....+. ++......+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4779999999999999888777                        479999999898877664 445678999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCe-eEEEe---------cccCCceEEEEEec-CCCEEEEEE-CCCcEEEEECCCCceEEEe
Q 011457          230 TYMFSAGDDKQVKCWDLEQNK-VIRSY---------HGHLSGVYCLGLHP-TIDILLTGG-RDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~~-~~~~l~sg~-~dg~i~iwd~~~~~~~~~~  297 (485)
                      +++++...++.|++||..... .+..+         ..+......++++| +++++++.+ .++.|++|| .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986542 45555         34455789999999 788888876 699999999 567777666


Q ss_pred             ccC----------CccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCEEEEEc--
Q 011457          298 AGH----------DNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDCFASAS--  362 (485)
Q Consensus       298 ~~~----------~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~--  362 (485)
                      ...          -.....++++++ +.++++...++.|++||..+++.+..+.  .+...+.+++++| +..+...+  
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            422          234889999998 6677777788999999999888888774  3456788999999 44333332  


Q ss_pred             -----CC-CEEEEECCCCceeeeec--cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          363 -----AE-NIKKFNLPKGEFLHNML--SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       363 -----~~-~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                           .+ .+.+|+..+++.+..+.  ..+......++++++| ++++...++.|++|++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                 22 49999999999887763  2445668999999999 777778899999999753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=7.2e-17  Score=152.12  Aligned_cols=239  Identities=11%  Similarity=0.225  Sum_probs=183.3

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc------ccccCEEEEEE-cCCCCEEEEEeC-CCcEEEE
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT------GHIEQVRGLAV-SSKHTYMFSAGD-DKQVKCW  244 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~------~h~~~V~~l~~-s~~~~~l~s~~~-dg~V~iw  244 (485)
                      +|...+.+++++++++++++...++.|.+||.. ++....+.      ++...+..+++ .+++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            456778999999999988888889999999976 66666653      24467899999 467766666543 8999999


Q ss_pred             ECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeC
Q 011457          245 DLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       245 d~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      | .+++.+..+. .+...+.++++.++++++++...++.|.+||.. ++.+..+.  .+...+..++++++++++++.+.
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 5677777664 344678999999999988887788999999964 55555553  34557899999999987777778


Q ss_pred             CCCEEEEECCCCeEEeEeccC--CCceEEEEECCCCCEEEEEcCC--CEEEEECCCCceeeeeccCC-cccEEEEEeCCC
Q 011457          322 DSTIKFWDLRYGKTMLTLTHH--KKSVRAMALHPTEDCFASASAE--NIKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEE  396 (485)
Q Consensus       322 dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~  396 (485)
                      ++.|++||.. ++.+..+...  ...+..++++++|.++++...+  .|.+|+. +++.+..+.... ...+..++++++
T Consensus       184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence            9999999974 5666666543  3578999999999988888765  5999994 566666654332 234778999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCC
Q 011457          397 GVLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       397 ~~l~sg~~dg~I~iwd~~~~  416 (485)
                      +.|++++.++.|++|++...
T Consensus       262 g~l~vs~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          262 GSVVLASKDYRLYIYRYVQL  281 (286)
T ss_dssp             TEEEEEETTTEEEEEECSCC
T ss_pred             CcEEEECCCCeEEEEEcccc
Confidence            95555578999999998654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=3.3e-18  Score=183.35  Aligned_cols=320  Identities=10%  Similarity=0.000  Sum_probs=213.8

Q ss_pred             eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcc-----eEEEEEccCCCEEEEEeCC---------C
Q 011457          132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGW-----VRSVAFDHSNTWFCTGSAD---------R  197 (485)
Q Consensus       132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~-----V~~l~~sp~~~~l~tgs~d---------g  197 (485)
                      ..+..+++++.++++.  +..+.+|+...    .+....+.+|...     ...++|||||++|+.++.+         +
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTT----CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCC----CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            3456788888888775  78888887643    3455667777654     2447899999999999876         5


Q ss_pred             eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cccCCce--------------
Q 011457          198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSGV--------------  262 (485)
Q Consensus       198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-~~h~~~v--------------  262 (485)
                      .+.+||+.+++.. .+..|...+...+|||||+.|+.+ .|+.|++||+.+++..+.. .++...+              
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            6779999998765 466778889999999999999988 4689999999988765432 2333223              


Q ss_pred             ---EEEEEecCCCEEEEEECCC------------------------------------cEEEEECCC---Cc--eEEEec
Q 011457          263 ---YCLGLHPTIDILLTGGRDS------------------------------------VCRVWDIRT---KM--QIFALA  298 (485)
Q Consensus       263 ---~~l~~~~~~~~l~sg~~dg------------------------------------~i~iwd~~~---~~--~~~~~~  298 (485)
                         ..+.|+|||+.|+.++.|.                                    .|++||+.+   ++  ....+.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence               3489999999999875332                                    488899988   73  233443


Q ss_pred             ------cCCccEEEEEEcCCCCEEEEEeC----CCCEEEEECCCCe----EEe--Ee--ccCCCceE-----EEEECCCC
Q 011457          299 ------GHDNTVCSVFTRPTDPQVVTGSH----DSTIKFWDLRYGK----TML--TL--THHKKSVR-----AMALHPTE  355 (485)
Q Consensus       299 ------~~~~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~~~~----~~~--~~--~~~~~~v~-----~l~~~p~~  355 (485)
                            +|...+..+.|+||++.++....    +..|.+||+.+++    +..  .+  ..+...|.     ...|+|||
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence                  37788999999999986665543    2369999999887    221  12  33444333     78899999


Q ss_pred             CEEE-EEcCC-C---EEEEECCCCceeeeeccCCcccEEE-EEeCCCC-eEEEEeC----CCc--EEEEeCCCCcccccc
Q 011457          356 DCFA-SASAE-N---IKKFNLPKGEFLHNMLSQQKTIINS-MAVNEEG-VLATGGD----NGS--LWFWDWKSGHNFQQA  422 (485)
Q Consensus       356 ~~l~-~~~~~-~---i~i~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~-~l~sg~~----dg~--I~iwd~~~~~~~~~~  422 (485)
                      +.|+ ..+.. +   |++|+...++... +..+ ...+.. ..++ ++ +++++..    .+.  |+..++..+.....+
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g-~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~l  407 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG-TWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCL  407 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS-SSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEES
T ss_pred             CEEEEEEEcCCCceEEEEEECCCCceEe-cccC-CEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcceee
Confidence            9776 55433 3   8999988766443 3333 333444 3355 44 4444443    234  444454433221111


Q ss_pred             eeeeccCCCCCCccEEEEEEccCCCEEEEEECC---CcEEEecCCCC
Q 011457          423 QTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD---KTIKMWREDET  466 (485)
Q Consensus       423 ~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D---g~I~iW~~~~~  466 (485)
                      .    .........+....|+++|++++.....   ..+.+++..++
T Consensus       408 t----~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~  450 (740)
T 4a5s_A          408 S----CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND  450 (740)
T ss_dssp             S----TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred             c----cccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence            1    0001124568899999999988766543   35777777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=2.4e-18  Score=182.10  Aligned_cols=286  Identities=12%  Similarity=0.066  Sum_probs=198.8

Q ss_pred             EEecCCcceEEEEEccCCCEEEEE--eCCCeEEEEECCCCceEEEEcccccCEE---------EEEEc--CCCCE-EEEE
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTG--SADRTIKIWDVAKGTLKLTLTGHIEQVR---------GLAVS--SKHTY-MFSA  235 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tg--s~dg~I~iwd~~~~~~~~~~~~h~~~V~---------~l~~s--~~~~~-l~s~  235 (485)
                      .+.+|...|..++|++++-++++.  +.++...||....+.....+..+...+.         ...|+  ||+++ |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            456899999999999887777777  5588999999655555667777766666         56666  99998 7765


Q ss_pred             eC-CCcEEEEECC--CCeeEEEecc-----cCCceEEEEEecCCCEEEEEECC----------CcEEEEECCC------C
Q 011457          236 GD-DKQVKCWDLE--QNKVIRSYHG-----HLSGVYCLGLHPTIDILLTGGRD----------SVCRVWDIRT------K  291 (485)
Q Consensus       236 ~~-dg~V~iwd~~--~~~~~~~~~~-----h~~~v~~l~~~~~~~~l~sg~~d----------g~i~iwd~~~------~  291 (485)
                      +. +..|.+|++.  .......+..     |...+..++|+|||+.|++++.+          ..|++||+.+      +
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence            53 5667777765  2033445554     66788999999999999998877          5899999988      5


Q ss_pred             ceEEEec-cCCccEEEEEEcCCCCEEEEEeCC--------CCEEEEECC-CC---eEEeEeccCCCceEEEEECCCCCEE
Q 011457          292 MQIFALA-GHDNTVCSVFTRPTDPQVVTGSHD--------STIKFWDLR-YG---KTMLTLTHHKKSVRAMALHPTEDCF  358 (485)
Q Consensus       292 ~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~d--------g~I~iwd~~-~~---~~~~~~~~~~~~v~~l~~~p~~~~l  358 (485)
                      + ...+. .+...+..+.|+|||++|+.++.+        ..|++||+. ++   +.......+...+..+.|+|||+++
T Consensus       178 ~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~  256 (662)
T 3azo_A          178 A-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI  256 (662)
T ss_dssp             G-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred             c-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence            4 44555 566788889999999999887755        379999998 56   4444444456789999999999977


Q ss_pred             EEEcCCC---EEEEECCCCceeeeeccCCccc--------EEEEEeCCCC-eEEEEeCCCcEEEE--eCCCCccccccee
Q 011457          359 ASASAEN---IKKFNLPKGEFLHNMLSQQKTI--------INSMAVNEEG-VLATGGDNGSLWFW--DWKSGHNFQQAQT  424 (485)
Q Consensus       359 ~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~--------i~~~~~~~~~-~l~sg~~dg~I~iw--d~~~~~~~~~~~~  424 (485)
                      ++++.++   |.+|+..+++... +...+...        +..+++++++ +++++.. |.+++|  |..+++ ...+. 
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~-  332 (662)
T 3azo_A          257 VATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA-  332 (662)
T ss_dssp             EEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC-
T ss_pred             EEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec-
Confidence            7776664   7777776666433 32332222        4678888888 7777777 999999  555544 22221 


Q ss_pred             eeccCCCCCCccEEEE-EEccCCCEEEEEECCCc--EEEecCCCCC
Q 011457          425 IVQPGSLDSEAGIYAL-SYDVTGSRLVTCEADKT--IKMWREDETA  467 (485)
Q Consensus       425 ~~~~~~~~~~~~V~~l-~~s~~g~~L~s~~~Dg~--I~iW~~~~~~  467 (485)
                             .+...+..+ +++.+.-++++++.+..  |.+|++.++.
T Consensus       333 -------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          333 -------GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             -------SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -------CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence                   234456666 55544334445555654  4444554543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=4.2e-17  Score=158.05  Aligned_cols=257  Identities=13%  Similarity=0.098  Sum_probs=181.0

Q ss_pred             cceEEEEEccCCCEEEEEe---------CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC---C--cE
Q 011457          176 GWVRSVAFDHSNTWFCTGS---------ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD---K--QV  241 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g--~V  241 (485)
                      ..+...++  ||++++...         .++.|.+||+.+++... +    ..+..++|+|+|++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            44666777  788776542         25789999999887543 3    568899999999999887654   2  48


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC---------------------------CcEEEEECCCCceE
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD---------------------------SVCRVWDIRTKMQI  294 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d---------------------------g~i~iwd~~~~~~~  294 (485)
                      .+||+.+++.......+ . +..+.|+|+|+.|+.++.+                           ..|.+||+.+++.+
T Consensus        88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            88899888766655433 4 9999999999988887642                           57999999988764


Q ss_pred             EEeccCCccEEEEEEcCCCCEEEEEeCCC-------CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC---
Q 011457          295 FALAGHDNTVCSVFTRPTDPQVVTGSHDS-------TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE---  364 (485)
Q Consensus       295 ~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-------~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---  364 (485)
                      ..+.. . .+..+.|+|++ +++++..++       ...+|.+.+++. ..+..+ ..+..+  +|+|+.|+..+.+   
T Consensus       166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence            55554 3 78899999999 777776542       344554444543 334333 445544  9999988766532   


Q ss_pred             ------CEEEEECCCCceeeeeccCCcccEEE-EEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE
Q 011457          365 ------NIKKFNLPKGEFLHNMLSQQKTIINS-MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI  437 (485)
Q Consensus       365 ------~i~i~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V  437 (485)
                            .|.+||  +++ ...+...+...+.. +.|+ ++++++++.+|.+++| +.+++.. .+        ..+...|
T Consensus       239 ~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~-~~--------~~~~~~v  304 (347)
T 2gop_A          239 YMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIK-PI--------AKGRHWI  304 (347)
T ss_dssp             CCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEE-EE--------ECSSSEE
T ss_pred             CccccceEEEEC--CCc-eEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceE-EE--------ecCCCeE
Confidence                  277777  454 34444555666775 8899 7788888999999999 8754331 11        1235679


Q ss_pred             EEEEEccCCCEEEEEECCCcE-EEecCC
Q 011457          438 YALSYDVTGSRLVTCEADKTI-KMWRED  464 (485)
Q Consensus       438 ~~l~~s~~g~~L~s~~~Dg~I-~iW~~~  464 (485)
                      .+++|++  ..+++++.++.. .||.++
T Consensus       305 ~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          305 MGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            9999999  677888777765 777776

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.80  E-value=1.4e-17  Score=162.89  Aligned_cols=256  Identities=11%  Similarity=0.118  Sum_probs=182.7

Q ss_pred             CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEeccc------
Q 011457          195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD----------DKQVKCWDLEQNKVIRSYHGH------  258 (485)
Q Consensus       195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~V~iwd~~~~~~~~~~~~h------  258 (485)
                      .|+.|.+||..+++.+..+..+..+  .++|+|++++++++..          ++.|.+||+.+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999999998888776555  8999999999998863          678999999999988887532      


Q ss_pred             CCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEE-eccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCC-C
Q 011457          259 LSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRY-G  333 (485)
Q Consensus       259 ~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~-~  333 (485)
                      ......++++|+|++|+++..  ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++.. +
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            245678999999999998874  58999999999988877 542 2 22335567765 6788899999999999865 5


Q ss_pred             eEEeE------eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee--eeeccCC---------cccEEEEEeCC
Q 011457          334 KTMLT------LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL--HNMLSQQ---------KTIINSMAVNE  395 (485)
Q Consensus       334 ~~~~~------~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~--~~~~~~~---------~~~i~~~~~~~  395 (485)
                      +....      +.....+ ..+.+++++..++..+.++ +.++|+..+...  ..+....         ......+++++
T Consensus       185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~  263 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR  263 (361)
T ss_dssp             SEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred             cEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence            54421      1111222 1233456666655555555 999998655321  1110000         01111267888


Q ss_pred             CC-eEEEEeC-----------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          396 EG-VLATGGD-----------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       396 ~~-~l~sg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      ++ .++++..           .+.|.+||+.+++.+..+..        +.  +.+++|+|+|++|++++. ++|.+||.
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--------~~--p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--------RD--ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--------TT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--------CC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            86 5554432           34899999999887766542        22  889999999999998886 99999999


Q ss_pred             CCC
Q 011457          464 DET  466 (485)
Q Consensus       464 ~~~  466 (485)
                      .+.
T Consensus       333 ~t~  335 (361)
T 2oiz_A          333 SQP  335 (361)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            887

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.80  E-value=5e-17  Score=156.75  Aligned_cols=273  Identities=9%  Similarity=0.068  Sum_probs=193.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      ..|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|++++++++++..++.|.+||..+++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            457788999988888877888999999   35666777777788899999999998788888999999999988766555


Q ss_pred             cccCCceEEEEEecCCCEEEEEECC----CcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEEeC------CC
Q 011457          256 HGHLSGVYCLGLHPTIDILLTGGRD----SVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTGSH------DS  323 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~------dg  323 (485)
                      ..+...+.+++++++++++++...+    +.|.+||..++.....+.  .+...+..+.+++++.++++...      .+
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            4566789999999999887777666    689999998877653433  24457899999999987776653      35


Q ss_pred             CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE-cC-CCEEEEECCC-Cceeeee----c-c-CCcccEEEEEeC
Q 011457          324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA-SA-ENIKKFNLPK-GEFLHNM----L-S-QQKTIINSMAVN  394 (485)
Q Consensus       324 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~-~~-~~i~i~d~~~-~~~~~~~----~-~-~~~~~i~~~~~~  394 (485)
                      .|..||...++... +......+..++|+|++..++.+ +. +.|.+|+..+ +..+..+    . . .....+..++++
T Consensus       163 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d  241 (333)
T 2dg1_A          163 GVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  241 (333)
T ss_dssp             EEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             eEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence            56777766544432 22233457899999999865544 33 3499999864 3322211    1 0 112467889999


Q ss_pred             CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCC-CCCCccEEEEEEccCCCEEEEEECCC
Q 011457          395 EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS-LDSEAGIYALSYDVTGSRLVTCEADK  456 (485)
Q Consensus       395 ~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~~s~~g~~L~s~~~Dg  456 (485)
                      +++ ++++...++.|.+||. +++.+..+..   +.. .++...+.+++|+++++.|+.++.++
T Consensus       242 ~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~---~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          242 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILI---PGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TTCCEEEEEETTTEEEEECT-TSCEEEEEEC---TTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCCEEEEEcCCCEEEEECC-CCCEEEEEEc---CCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            999 5555566789999998 4554433321   100 01122578899999988887666653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=3.2e-16  Score=147.66  Aligned_cols=240  Identities=14%  Similarity=0.243  Sum_probs=176.6

Q ss_pred             ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec------ccCCceEEEEEe-cCCCEEEEEEC-CCcEEEE
Q 011457          215 GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH------GHLSGVYCLGLH-PTIDILLTGGR-DSVCRVW  286 (485)
Q Consensus       215 ~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~l~sg~~-dg~i~iw  286 (485)
                      ++...+.++++++++.++++...++.|.+||.. ++.+..+.      ++...+..+++. ++++++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888889999999987 66666663      244678999995 66665555533 8999999


Q ss_pred             ECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCEEEEEcC
Q 011457          287 DIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       287 d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                      | .+++.+..+. .+...+..++++++++++++...++.|.+||.. ++.+..+.  .+...+..+++++++.++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 5666666664 344578999999999888887788999999964 55555553  33456899999999998877765


Q ss_pred             CC-EEEEECCCCceeeeeccC-CcccEEEEEeCCCC-eEEEEeCCC-cEEEEeCCCCcccccceeeeccCCCCCCccEEE
Q 011457          364 EN-IKKFNLPKGEFLHNMLSQ-QKTIINSMAVNEEG-VLATGGDNG-SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA  439 (485)
Q Consensus       364 ~~-i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~  439 (485)
                      ++ |.+|+. +++.+..+... ....+..++++++| ++++...++ .|.+||. +++.+..+...      .....+.+
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------~~~~~~~~  255 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK------VKHAQCFD  255 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------SCCSCEEE
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------CCCCccee
Confidence            54 999997 55555554322 23568899999999 555555665 9999995 45544433221      12234789


Q ss_pred             EEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          440 LSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       440 l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      ++++++|+++++ +.|++|++|++...
T Consensus       256 i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          256 VALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            999999987776 67999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=6.6e-17  Score=155.96  Aligned_cols=243  Identities=16%  Similarity=0.152  Sum_probs=185.7

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeeEEEec-ccCCceEEEEEecCC
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDD------------------------KQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTI  271 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~d------------------------g~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~  271 (485)
                      -+.+.+++++++|+++++...+                        +.|.+||..+++.+..+. ++......++++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4678999999999988887776                        479999999999887764 455678999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCc-eEEEe---------ccCCccEEEEEEcC-CCCEEEEEe-CCCCEEEEECCCCeEEeEe
Q 011457          272 DILLTGGRDSVCRVWDIRTKM-QIFAL---------AGHDNTVCSVFTRP-TDPQVVTGS-HDSTIKFWDLRYGKTMLTL  339 (485)
Q Consensus       272 ~~l~sg~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~l~~~~-~~~~l~s~s-~dg~I~iwd~~~~~~~~~~  339 (485)
                      +++++...++.|++||..... .+..+         ..+......++++| ++.++++.+ .++.|++|| ..++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986542 45555         23445789999999 787777776 689999999 567777666


Q ss_pred             ccCC----------CceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeecc-CCcccEEEEEeCCCC-eEEEEe--
Q 011457          340 THHK----------KSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLS-QQKTIINSMAVNEEG-VLATGG--  403 (485)
Q Consensus       340 ~~~~----------~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~sg~--  403 (485)
                      ....          .....++++|+ +.++++...++ |.+|+..+++.+..+.. .....+..++++| + .+.+.+  
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            4322          34889999998 66666665555 99999998988877632 3445678899999 5 333332  


Q ss_pred             -----CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          404 -----DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       404 -----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                           .+..|++||..+++.+..+..     ...+.....+++++++|..+++...++.|++|+++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~-----~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKP-----VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECC-----SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcC-----CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence                 345899999999887665431     1134556899999999988888888999999998754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=2.4e-17  Score=162.29  Aligned_cols=262  Identities=13%  Similarity=0.042  Sum_probs=184.8

Q ss_pred             EEEECCCCceEEEEcccccCEEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457          200 KIWDVAKGTLKLTLTGHIEQVRG-----LAVSSKHTYMFSAGD-DK--QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       200 ~iwd~~~~~~~~~~~~h~~~V~~-----l~~s~~~~~l~s~~~-dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~  271 (485)
                      ..+|..++.....+..|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+..+.|+|++
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence            34577788888888887766666     889999999998887 66  48889999998887777676666678899999


Q ss_pred             CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEE--EcCCCCEEEEE----------------------eCCCCEEE
Q 011457          272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF--TRPTDPQVVTG----------------------SHDSTIKF  327 (485)
Q Consensus       272 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~s~----------------------s~dg~I~i  327 (485)
                      +.|+.++.++.|++||+.+++.......+...+....  +++++.+++..                      ..++.|.+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            9999999999999999999987776666666554443  48899888743                      24467999


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEcCC-------CEEEEECCCCceeeeeccCCc-ccEEEEEeCCCC-
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASASAE-------NIKKFNLPKGEFLHNMLSQQK-TIINSMAVNEEG-  397 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~-------~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~-  397 (485)
                      ||+.+++... +..+...+..+.|+| ++..|+....+       .|.+++...+.. ..+..... ..+....|+|+| 
T Consensus       173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS
T ss_pred             EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC
Confidence            9999886543 434566789999999 99988776542       488888765543 33333332 357788999999 


Q ss_pred             eEEEEe-CCC----cEEEEeCCCCcccccceeeeccCCCCCC-ccEEEEEEccCCCEEEEE---------ECCCcEEEec
Q 011457          398 VLATGG-DNG----SLWFWDWKSGHNFQQAQTIVQPGSLDSE-AGIYALSYDVTGSRLVTC---------EADKTIKMWR  462 (485)
Q Consensus       398 ~l~sg~-~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~L~s~---------~~Dg~I~iW~  462 (485)
                      .|+..+ .++    .|++||+.+++.......   +.. .+. .......|+|||+.|+..         ..+..|++|+
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d  326 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSM---PAC-SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN  326 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCEEEEEEE---CCE-EEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred             EEEEEecCCCCCcceEEEEecCCCceEEEEcC---CCc-eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence            554433 322    399999998874322111   000 000 000113699999988854         4567899999


Q ss_pred             CCCCC
Q 011457          463 EDETA  467 (485)
Q Consensus       463 ~~~~~  467 (485)
                      +.++.
T Consensus       327 ~~~~~  331 (388)
T 3pe7_A          327 MKNGT  331 (388)
T ss_dssp             TTTTE
T ss_pred             ccCCc
Confidence            98754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.78  E-value=4.1e-15  Score=140.46  Aligned_cols=280  Identities=9%  Similarity=-0.009  Sum_probs=198.7

Q ss_pred             ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE-EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 011457          172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK  250 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~  250 (485)
                      ..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||.. ++
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            3556789999999999977776668899999988 554332 22345779999999999887777778899999986 43


Q ss_pred             eE-EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEE
Q 011457          251 VI-RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW  328 (485)
Q Consensus       251 ~~-~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iw  328 (485)
                      .. ..+......+.++++.++++++++...++.|.+||. +++... ........+..+++.+++..+++...++.|..|
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI  167 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence            32 222234567899999999988887777889999998 554432 223345678999999999877777777899999


Q ss_pred             ECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe-CC
Q 011457          329 DLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG-DN  405 (485)
Q Consensus       329 d~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~-~d  405 (485)
                      |. +++.... +......+..+++++++.++++...+ .|.+|+. +++............+..++++++|.+.++. .+
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  245 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA  245 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence            98 6655432 33344568899999999977776544 4999998 6665432233345678899999998555554 67


Q ss_pred             CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          406 GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       406 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                      +.|..||. ++. +..+   ..+   .+...+.++++ ++|.++++.. .+.|..++.++.
T Consensus       246 ~~i~~~d~-~g~-~~~~---~~~---~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          246 NKIGRLTS-NNI-IEEY---PIQ---IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             TEEEEEET-TTE-EEEE---ECS---SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             ceEEEECC-CCc-eEEE---eCC---CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            89999998 342 2221   111   23456899999 8887776654 566777766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=8.5e-16  Score=148.06  Aligned_cols=264  Identities=9%  Similarity=0.033  Sum_probs=188.4

Q ss_pred             eeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE
Q 011457          132 IVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL  211 (485)
Q Consensus       132 i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~  211 (485)
                      +.++.+++....+.....+..+..|.       ......+.++...+.+++|++++++++++..++.|.+||..+++...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~   80 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQTIT-------AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR   80 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCEEE-------CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             cceeeecCCccceeEEeecccCcccc-------cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence            45556666666555555666777772       24566777888889999999999988888889999999998887765


Q ss_pred             EEcccccCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeEEEec--ccCCceEEEEEecCCCEEEEEEC------
Q 011457          212 TLTGHIEQVRGLAVSSKHTYMFSAGDD----KQVKCWDLEQNKVIRSYH--GHLSGVYCLGLHPTIDILLTGGR------  279 (485)
Q Consensus       212 ~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sg~~------  279 (485)
                      ....+...+.+++++++++++++...+    +.|.+||.++++....+.  .+...+.+++++|+++++++...      
T Consensus        81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence            554567889999999999887777666    689999998877653332  24467899999999987776654      


Q ss_pred             CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCC-CeEEeE--------eccCCCceEEE
Q 011457          280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRY-GKTMLT--------LTHHKKSVRAM  349 (485)
Q Consensus       280 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~-~~~~~~--------~~~~~~~v~~l  349 (485)
                      .+.|..||..+++... +......+..++|+++++.|+++ +.++.|.+||+.. +.....        +..+ ..+..+
T Consensus       161 ~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i  238 (333)
T 2dg1_A          161 LGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC  238 (333)
T ss_dssp             CEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred             CceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence            3567777766554433 32234457889999999866544 5678999999964 332211        1111 467889


Q ss_pred             EECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc-----ccEEEEEeCCCC-eEEEEeCC
Q 011457          350 ALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK-----TIINSMAVNEEG-VLATGGDN  405 (485)
Q Consensus       350 ~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~-~l~sg~~d  405 (485)
                      +++++|.++++...++ |.+|+. +++.+..+.....     ..+.++++++++ .|++++.+
T Consensus       239 ~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          239 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            9999999888776554 999998 5666655532221     157889999987 66665555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=1.3e-16  Score=155.87  Aligned_cols=277  Identities=9%  Similarity=0.068  Sum_probs=195.9

Q ss_pred             cCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccc---
Q 011457          150 ERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGH---  216 (485)
Q Consensus       150 ~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h---  216 (485)
                      +..+.+|+..    ..+.+..+..+..+  .++|+|+++++++++          .++.|.+||..+++.+.++...   
T Consensus        30 d~~v~v~D~~----t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~  103 (361)
T 2oiz_A           30 ESRVHVYDYT----NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR  103 (361)
T ss_dssp             GCEEEEEETT----TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred             cCeEEEEECC----CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence            3445555432    24556677776666  899999999999886          3678999999999988877532   


Q ss_pred             ---ccCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEE-ecccCCceEEEEEecCC-CEEEEEECCCcEEEEECC
Q 011457          217 ---IEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIR  289 (485)
Q Consensus       217 ---~~~V~~l~~s~~~~~l~s~~~--dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~  289 (485)
                         ......++|+|+|++|+++..  ++.|.+||+.+++.+.. +. ... ...+.+.|++ ..+++.+.||.+.+|++.
T Consensus       104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence               245678999999999998874  68999999999999888 65 222 2335677765 678889999999999987


Q ss_pred             C-CceEEEe------ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE--EeEeccC----------CCceEEEE
Q 011457          290 T-KMQIFAL------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT--MLTLTHH----------KKSVRAMA  350 (485)
Q Consensus       290 ~-~~~~~~~------~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~----------~~~v~~l~  350 (485)
                      . ++.....      .....++ .+.+++++..++..+.++.|.++|+.....  ...+...          ......++
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a  260 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG  260 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred             CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence            5 4443221      1111221 223356677777788899999999875432  2221110          01122378


Q ss_pred             ECCCCCEEEEEcC------------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC-
Q 011457          351 LHPTEDCFASASA------------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG-  416 (485)
Q Consensus       351 ~~p~~~~l~~~~~------------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~-  416 (485)
                      |+|++..++++..            +.+.+||+.+++.+..+..+.   ...++++|+| +|++++. +.|.+||..++ 
T Consensus       261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~  336 (361)
T 2oiz_A          261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE  336 (361)
T ss_dssp             EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred             EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence            9999887666532            239999999999988875443   8999999999 7777776 99999999998 


Q ss_pred             -cccccceeeeccCCCCCCccEEEEEEccCCC
Q 011457          417 -HNFQQAQTIVQPGSLDSEAGIYALSYDVTGS  447 (485)
Q Consensus       417 -~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  447 (485)
                       +.+..+.        ........++++|+|.
T Consensus       337 l~~~~~i~--------~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          337 PKLLRTIE--------GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CEEEEEET--------TSCSSEEEEEECCCSC
T ss_pred             ceeeEEec--------cCCCCcEEEEecCCCC
Confidence             7665532        2345577899999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=7.8e-18  Score=178.13  Aligned_cols=284  Identities=12%  Similarity=-0.008  Sum_probs=188.6

Q ss_pred             CCcceeecccCCCCcccccc--cccCCCCCCCCCCCCCCcceEEEEecCCcceE---------EEEEc--cCCCE-EEEE
Q 011457          128 KSSAIVSTSASSERNLSTSA--IMERIPSKWPRPEWHAPWKCYRVISGHLGWVR---------SVAFD--HSNTW-FCTG  193 (485)
Q Consensus       128 ~~~~i~~~~~~~~~~~~~t~--~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~---------~l~~s--p~~~~-l~tg  193 (485)
                      |...+....++++.-+.++.  ..+....+|....    -...+.+..|...|.         ...|+  |||++ |+.+
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA----DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT----TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECC----CCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            33444455555554444443  2233444554311    123455666766666         66666  99998 7766


Q ss_pred             eC-CCeEEEEECC--CCceEEEEcc-----cccCEEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------C
Q 011457          194 SA-DRTIKIWDVA--KGTLKLTLTG-----HIEQVRGLAVSSKHTYMFSAGDD----------KQVKCWDLEQ------N  249 (485)
Q Consensus       194 s~-dg~I~iwd~~--~~~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~~d----------g~V~iwd~~~------~  249 (485)
                      +. +..|.+|++.  .......+..     |...+..++|+|||+.|++++.|          ..|++||+.+      +
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence            54 5667777765  2033455655     66788999999999999998877          5899999988      5


Q ss_pred             eeEEEec-ccCCceEEEEEecCCCEEEEEECC--------CcEEEEECC-CC---ceEEEeccCCccEEEEEEcCCCCEE
Q 011457          250 KVIRSYH-GHLSGVYCLGLHPTIDILLTGGRD--------SVCRVWDIR-TK---MQIFALAGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       250 ~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~~l~~~~~~~~l  316 (485)
                      +. ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++   +......++...+..+.|+|+|+++
T Consensus       178 ~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~  256 (662)
T 3azo_A          178 AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI  256 (662)
T ss_dssp             GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred             ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence            54 4444 566788889999999999988755        379999998 56   3444444567889999999999988


Q ss_pred             EEEeCCC--CEEEEECCCCeEEeEeccCCCc--------eEEEEECCCCCEEEEEcCCCEEEE--ECCCCceeeeeccCC
Q 011457          317 VTGSHDS--TIKFWDLRYGKTMLTLTHHKKS--------VRAMALHPTEDCFASASAENIKKF--NLPKGEFLHNMLSQQ  384 (485)
Q Consensus       317 ~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~--------v~~l~~~p~~~~l~~~~~~~i~i~--d~~~~~~~~~~~~~~  384 (485)
                      ++++.++  .|.+||+.+++.......+...        +..++|+|++.++++++.+.+.+|  |...++ +..+ ..+
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~  334 (662)
T 3azo_A          257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDA-AGP  334 (662)
T ss_dssp             EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEEC-CSS
T ss_pred             EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEe-cCC
Confidence            8888888  5666676666654433332222        567899999999998887336666  665555 4443 444


Q ss_pred             cccEEEE-EeCCCC-eEEEEeCCC--cEEEEeCCCCcc
Q 011457          385 KTIINSM-AVNEEG-VLATGGDNG--SLWFWDWKSGHN  418 (485)
Q Consensus       385 ~~~i~~~-~~~~~~-~l~sg~~dg--~I~iwd~~~~~~  418 (485)
                      ...+..+ +++.+. ++++++.+.  .|++||+.+++.
T Consensus       335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            5567776 666555 444455553  566667777654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=9.5e-16  Score=163.52  Aligned_cols=242  Identities=11%  Similarity=0.062  Sum_probs=178.8

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCC-----eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc-------
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADR-----TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ-------  240 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~-------  240 (485)
                      +|...+..++|||||++||.++.++     .|++||+.+++.......+ ..+..++|+||++.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4555789999999999998776543     8999999999876543322 23678999999999999888766       


Q ss_pred             ---------EEEEECCCCe----eEEEecccCCceEEEEEecCCCEEEEEEC-----CCcEEEEECCC------Cc-eEE
Q 011457          241 ---------VKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGGR-----DSVCRVWDIRT------KM-QIF  295 (485)
Q Consensus       241 ---------V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-----dg~i~iwd~~~------~~-~~~  295 (485)
                               |++|++.+++    .+.....|...+..+.|+|||++|+.++.     +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     9999998875    33333335566889999999998888765     56899999986      43 355


Q ss_pred             EeccCCccEEEEEEcCCCCEEEEEeCCC----CEEEEECCCCeE--EeEeccCCC--ceEEEEECCCCCEEEEEcCCC--
Q 011457          296 ALAGHDNTVCSVFTRPTDPQVVTGSHDS----TIKFWDLRYGKT--MLTLTHHKK--SVRAMALHPTEDCFASASAEN--  365 (485)
Q Consensus       296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg----~I~iwd~~~~~~--~~~~~~~~~--~v~~l~~~p~~~~l~~~~~~~--  365 (485)
                      .+..+...+.. .|++++..|+..+..+    .|.+||+.++..  ...+..+..  .+..+.|++++.++++...++  
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            66666666655 4788888887766543    599999987642  234444433  688899998788888887775  


Q ss_pred             -EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEE-EEe---CCCcEEEEeCCCCc
Q 011457          366 -IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLA-TGG---DNGSLWFWDWKSGH  417 (485)
Q Consensus       366 -i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-sg~---~dg~I~iwd~~~~~  417 (485)
                       |.+|++.+++.+..+. .+...+..+.+++++ .++ +.+   ..+.|+.||+.+++
T Consensus       360 ~l~~~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence             7788887787666653 346778889999887 444 333   24789999998876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.75  E-value=1.5e-15  Score=143.91  Aligned_cols=241  Identities=11%  Similarity=0.101  Sum_probs=178.4

Q ss_pred             EEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          168 YRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      +..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++++++++++...++.|.+||.
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            455666778889999999998 7888888999999999877  5666667788999999999998777777789999999


Q ss_pred             CCCeeEEEeccc----CCceEEEEEecCCCEEEEE----E-------------CCCcEEEEECCCCceEEEeccCCccEE
Q 011457          247 EQNKVIRSYHGH----LSGVYCLGLHPTIDILLTG----G-------------RDSVCRVWDIRTKMQIFALAGHDNTVC  305 (485)
Q Consensus       247 ~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~sg----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~v~  305 (485)
                      .+++........    ...+..++++|+|+++++.    +             ..+.|..+|.. ++ +..+..+.....
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~  175 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN  175 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence            888765443221    2346789999999988873    2             13456666655 33 444555667789


Q ss_pred             EEEEcCCCCEEEEEeCCCCEEEEECC-CCeE---EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec
Q 011457          306 SVFTRPTDPQVVTGSHDSTIKFWDLR-YGKT---MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML  381 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~dg~I~iwd~~-~~~~---~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~  381 (485)
                      .++|+|+++.+++.+.++.|.+||+. .++.   ...+..+...+..++++++|.++++. .++|.+|+.. ++.+..+.
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~  253 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVL  253 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEE
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEE
Confidence            99999999998777778999999987 4544   23333344567789999999987777 6669999976 77666654


Q ss_pred             cCCcccEEEEEe-CCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457          382 SQQKTIINSMAV-NEEG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       382 ~~~~~~i~~~~~-~~~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                      .. .. +.+++| .+++ .|++++.+ .+.-++.++..
T Consensus       254 ~~-~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          254 TP-QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             CS-SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred             CC-CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence            33 33 788888 5777 77777765 56666666543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=1.4e-15  Score=162.16  Aligned_cols=273  Identities=10%  Similarity=0.076  Sum_probs=186.8

Q ss_pred             cCCCEEEEEeCC-----CeEEEEECCCCceEEEEc------ccccCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 011457          185 HSNTWFCTGSAD-----RTIKIWDVAKGTLKLTLT------GHIEQVRGLAVSSKHTYMFSAGDDK-----QVKCWDLEQ  248 (485)
Q Consensus       185 p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~~~dg-----~V~iwd~~~  248 (485)
                      |+|++++....+     +.+.+.+...++....+.      +|...+..++|||||++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            566666544332     234444544444332222      2334688999999999998775543     899999999


Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEECCCc----------------EEEEECCCCce--EEEe--ccCCccEEEEE
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV----------------CRVWDIRTKMQ--IFAL--AGHDNTVCSVF  308 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~----------------i~iwd~~~~~~--~~~~--~~~~~~v~~l~  308 (485)
                      ++.+.....+ ..+..++|+|||+.|+.++.++.                |++|++.++..  ...+  ..+...+..+.
T Consensus       161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            9877643322 23678999999999999988776                99999988762  2222  23456688999


Q ss_pred             EcCCCCEEEEEeC-----CCCEEEEECCC------Ce-EEeEeccCCCceEEEEECCCCCEEEEEcC-CC----EEEEEC
Q 011457          309 TRPTDPQVVTGSH-----DSTIKFWDLRY------GK-TMLTLTHHKKSVRAMALHPTEDCFASASA-EN----IKKFNL  371 (485)
Q Consensus       309 ~~~~~~~l~s~s~-----dg~I~iwd~~~------~~-~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~----i~i~d~  371 (485)
                      |+|++++|+.++.     +..|.+||+.+      +. ....+..+...+.. .|+|+|..|+..+. +.    |.+|++
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~  318 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF  318 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence            9999999987765     56899999986      43 35555555555554 47888887766544 22    899999


Q ss_pred             CCCce--eeeeccCCc-ccEEEEEeCCCC-eEEEEeCCCc--EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC
Q 011457          372 PKGEF--LHNMLSQQK-TIINSMAVNEEG-VLATGGDNGS--LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT  445 (485)
Q Consensus       372 ~~~~~--~~~~~~~~~-~~i~~~~~~~~~-~l~sg~~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  445 (485)
                      .++..  ...+..+.. ..+..+.+++++ ++++...+|.  |++||+.+|+....+.        .+...+..++++++
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--------~~~~~v~~~~~s~d  390 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--------LEVGSVVGYSGQKK  390 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--------CCSSEEEEEECCTT
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--------CCCceEEEEecCCC
Confidence            87642  234434433 368888888666 7777888874  6667776776443332        13556888999999


Q ss_pred             CCEEEEEE----CCCcEEEecCCCCC
Q 011457          446 GSRLVTCE----ADKTIKMWREDETA  467 (485)
Q Consensus       446 g~~L~s~~----~Dg~I~iW~~~~~~  467 (485)
                      +..|+...    ..++|++|++.++.
T Consensus       391 ~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          391 DTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            98776443    34789999997765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=9.5e-16  Score=147.74  Aligned_cols=262  Identities=8%  Similarity=0.039  Sum_probs=189.2

Q ss_pred             CCCeEEEEECCCCceEEEEc------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457          195 ADRTIKIWDVAKGTLKLTLT------GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH  268 (485)
Q Consensus       195 ~dg~I~iwd~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  268 (485)
                      .++.|.+||.++++....+.      ........+.+. ++..+++...++.|.+||..+++.+.++. .......++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~   92 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL   92 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence            47899999999998765442      112346778875 34555566667999999999999999885 45678899999


Q ss_pred             cCCCEEEEEECCCcEEEEECCCCceEEEeccCC-----ccEEEEEEcCCCCEEEEEe--CCCCEEEEECCCCeEEeEecc
Q 011457          269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-----NTVCSVFTRPTDPQVVTGS--HDSTIKFWDLRYGKTMLTLTH  341 (485)
Q Consensus       269 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~  341 (485)
                      +++..+++...++.|.+||..+++....+....     .....+++  ++..++++.  .++.|.+||+.+++.+..+..
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence            988544444489999999999998777665322     14556666  345555555  488999999999998877765


Q ss_pred             CCCceEEEEECCCCCEEEEEcCC-----------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457          342 HKKSVRAMALHPTEDCFASASAE-----------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLW  409 (485)
Q Consensus       342 ~~~~v~~l~~~p~~~~l~~~~~~-----------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~  409 (485)
                      . .....+.++|+|++++++..+           .|.++|..+++....+..........+++++++ .|+++..  .|.
T Consensus       171 g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~  247 (328)
T 3dsm_A          171 G-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIW  247 (328)
T ss_dssp             S-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEE
T ss_pred             C-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEE
Confidence            3 345788999999988877654           499999999987766543334468899999987 6666544  999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEE----ECCCcEEEecCCCCCCCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTC----EADKTIKMWREDETATPE  470 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~----~~Dg~I~iW~~~~~~~~~  470 (485)
                      +||..+++..... ..  .   ........++++| ++..+++.    ..++.|.+|+.+ +....
T Consensus       248 ~~d~~t~~~~~~~-~~--~---~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~  306 (328)
T 3dsm_A          248 RMPVEADRVPVRP-FL--E---FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID  306 (328)
T ss_dssp             EEETTCSSCCSSC-SB--C---CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred             EEECCCCceeeee-ee--c---CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence            9999887753211 00  0   1135688999999 55555555    568999999998 55433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=1.2e-16  Score=157.54  Aligned_cols=255  Identities=9%  Similarity=-0.036  Sum_probs=176.0

Q ss_pred             EEEECCCCceEEEEcccccC-----EEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecccCCceEEEEEecCC
Q 011457          200 KIWDVAKGTLKLTLTGHIEQ-----VRGLAVSSKHTYMFSAGDD---KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       200 ~iwd~~~~~~~~~~~~h~~~-----V~~l~~s~~~~~l~s~~~d---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~  271 (485)
                      ...|..++..+..+..+...     +..++|+|+|++|+.....   ..|.+||+.+++......++......+.|+|+|
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE   92 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence            34577788777777655433     6778999999998876543   478899999887655444333333347899999


Q ss_pred             CEEEEEECCCcEEEEECCCCceEEEeccCCccEEE-------------------EEEcCCCCEEEEE-----eCCCCEEE
Q 011457          272 DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS-------------------VFTRPTDPQVVTG-----SHDSTIKF  327 (485)
Q Consensus       272 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------l~~~~~~~~l~s~-----s~dg~I~i  327 (485)
                      +.|+.++.++.|++||+.+++.......+......                   +.++|+++.++..     ..+..|.+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            99999999999999999988766555544432222                   2456667665543     35668999


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECC-CCCEEEEEcC-------CCEEEEECCCCceeeeeccCC-cccEEEEEeCCCC-
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHP-TEDCFASASA-------ENIKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEG-  397 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-  397 (485)
                      ||+.+++..... .+...+..+.|+| ++..|+..+.       ..|.+|++..++.. .+.... ...+..+.|+|++ 
T Consensus       173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGS  250 (396)
T ss_dssp             EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSS
T ss_pred             EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCC
Confidence            999988765444 4566789999999 7876665543       24888888765533 332322 3467889999999 


Q ss_pred             eEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CCCEEEEEE----------------CC
Q 011457          398 VLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TGSRLVTCE----------------AD  455 (485)
Q Consensus       398 ~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~L~s~~----------------~D  455 (485)
                      .|+.++.+     +.|++||+.+++......   .      . ... +.|++ +|++|++++                .+
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~------~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~  319 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPETLENEEVMV---M------P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND  319 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTTCCEEEEEE---C------C-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred             EEEEEecCCCCccceEEEEECCCCCeEEeee---C------C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence            66665443     449999998876432211   0      0 123 88999 999888765                34


Q ss_pred             CcEEEecCCCCC
Q 011457          456 KTIKMWREDETA  467 (485)
Q Consensus       456 g~I~iW~~~~~~  467 (485)
                      +.|++|++.++.
T Consensus       320 ~~i~~~d~~~~~  331 (396)
T 3c5m_A          320 PFLYVLNTKAKS  331 (396)
T ss_dssp             CEEEEEETTTTB
T ss_pred             CcEEEEecccCc
Confidence            789999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=2e-15  Score=141.55  Aligned_cols=231  Identities=10%  Similarity=0.055  Sum_probs=180.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccc-CCceE
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVY  263 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~  263 (485)
                      .+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+  +.++.|..||. +++.+..+..+ ...+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46789999999999999999999999998765 4789999999999888  35788999999 89999999765 35788


Q ss_pred             EEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEecc------CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457          264 CLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALAG------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM  336 (485)
Q Consensus       264 ~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~  336 (485)
                      ++.+.++|+++++.+. ++.|..+|. +++.+..+..      +......+.+.++++++++.+.++.|..||.. |+.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            9999999999999887 888888886 6777766642      22234556778999999999999999999998 9999


Q ss_pred             eEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC-----cccEEEEEeCCCCeEEEEeCCC----
Q 011457          337 LTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ-----KTIINSMAVNEEGVLATGGDNG----  406 (485)
Q Consensus       337 ~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~l~sg~~dg----  406 (485)
                      ..+... ....++...+++.+++++..++ +..+|..+|+.+.++....     -..+..+...++|.+++++.+|    
T Consensus       159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~  237 (276)
T 3no2_A          159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE  237 (276)
T ss_dssp             EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred             EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccc
Confidence            888764 3456778889999999888776 9999999999988874321     1337788888888444444322    


Q ss_pred             -----cEEEEeC-CCCcccccc
Q 011457          407 -----SLWFWDW-KSGHNFQQA  422 (485)
Q Consensus       407 -----~I~iwd~-~~~~~~~~~  422 (485)
                           ..+++++ .+|+.+..+
T Consensus       238 ~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          238 AGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             GGGSCCCSEEEECTTSBEEEEE
T ss_pred             ccccCCceEEEECCCCCEEEEe
Confidence                 3345555 355554443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=2e-15  Score=143.01  Aligned_cols=244  Identities=10%  Similarity=0.073  Sum_probs=174.3

Q ss_pred             ceEEEEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW  286 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw  286 (485)
                      ..+..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++++|+++++...++.|.+|
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ   95 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence            33445555667788999999998 7788888999999999877  66676677889999999999987777777899999


Q ss_pred             ECCCCceEEEeccC----CccEEEEEEcCCCCEEEEE----e-------------CCCCEEEEECCCCeEEeEeccCCCc
Q 011457          287 DIRTKMQIFALAGH----DNTVCSVFTRPTDPQVVTG----S-------------HDSTIKFWDLRYGKTMLTLTHHKKS  345 (485)
Q Consensus       287 d~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~----s-------------~dg~I~iwd~~~~~~~~~~~~~~~~  345 (485)
                      |..+++........    ...+..++++++|+++++.    +             ..+.|..+|.. ++ ...+..+...
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~  173 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVK  173 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSS
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCC
Confidence            99888754433221    2345679999999988873    2             13456666655 44 3344445566


Q ss_pred             eEEEEECCCCCEEEEEcCCC-EEEEECC-CCce---eeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457          346 VRAMALHPTEDCFASASAEN-IKKFNLP-KGEF---LHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       346 v~~l~~~p~~~~l~~~~~~~-i~i~d~~-~~~~---~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      ...++|+|+++.+++.+.++ |.+|++. ++..   ...+ ......+..++++++|.|.++. ++.|.+||.. ++.+.
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~  250 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELG  250 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEE
Confidence            78999999999886655554 9999986 5554   2333 3344556789999999655555 8899999986 55544


Q ss_pred             cceeeeccCCCCCCccEEEEEE-ccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          421 QAQTIVQPGSLDSEAGIYALSY-DVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       421 ~~~~~~~~~~~~~~~~V~~l~~-s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      .+..        +.. +++++| +++++.|++++.++ +.-++..+...
T Consensus       251 ~~~~--------~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          251 RVLT--------PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             EEEC--------SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             EEEC--------CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence            4331        233 788899 58999999988764 44445544443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.72  E-value=7.8e-14  Score=131.62  Aligned_cols=276  Identities=12%  Similarity=0.014  Sum_probs=195.2

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-EEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      .....+.+++++++|+++++...++.|.+||.. ++... .+......+..+++.+++.++++...++.|..||.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            445688999999999988877778999999987 55443 223334678999999999877777668899999988 554


Q ss_pred             EE-EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          252 IR-SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       252 ~~-~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                      .. .+......+.++++.++++++++...++.|..||.. ++... .+......+..+++.++++..++...++.|..||
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            32 222234678999999999887777768899999987 55442 2333456789999999998666666678899999


Q ss_pred             CCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEe-CCC
Q 011457          330 LRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG-DNG  406 (485)
Q Consensus       330 ~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~-~dg  406 (485)
                      . +++.... .......+..+++.+++.++++....+ |.+|+. +++............+..+++++++.|..+. .++
T Consensus       174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  251 (300)
T 2qc5_A          174 N-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN  251 (300)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             C-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence            8 5554332 223345688999999998887776555 999998 5554443233345668899999999544444 568


Q ss_pred             cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       407 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .|..||. ++... ...   .+   .....+.+++++++|+++++.. . .|..++.
T Consensus       252 ~i~~~~~-~g~~~-~~~---~~---~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          252 QIGRITN-DNTIQ-EYQ---LQ---TENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EEEEECT-TSCEE-EEE---CC---STTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             eEEEECC-CCcEE-EEE---CC---ccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            9999998 44322 111   11   1234578899999998666554 4 6666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=2.4e-15  Score=140.20  Aligned_cols=239  Identities=11%  Similarity=0.014  Sum_probs=171.3

Q ss_pred             ceEEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          177 WVRSVAFDHSNTWFC-TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      ...++++++++++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999999777 546789999999765543322233445678999999998665555 889999998765443222


Q ss_pred             cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                      ......+..+++.++++++++...++.|.+|+..+.............+.+++++++++++++...++.|.+||......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            23336789999999999777777788999998766554433333334678899999998777777788999999887665


Q ss_pred             EeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          336 MLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       336 ~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      ..........+.+++++++|.++++...+ .|.+|+........ ........+..++++++| ++++...++.|++|++
T Consensus       184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            44333333678999999999877777655 49999986654332 222233568899999998 6777778999999998


Q ss_pred             CCCc
Q 011457          414 KSGH  417 (485)
Q Consensus       414 ~~~~  417 (485)
                      ...+
T Consensus       263 ~~~~  266 (270)
T 1rwi_B          263 LEHH  266 (270)
T ss_dssp             CGGG
T ss_pred             CCcc
Confidence            7543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=2.9e-14  Score=146.71  Aligned_cols=325  Identities=10%  Similarity=0.052  Sum_probs=220.1

Q ss_pred             cccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC--CCceEEEEcccccC
Q 011457          142 NLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA--KGTLKLTLTGHIEQ  219 (485)
Q Consensus       142 ~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~  219 (485)
                      .+..+...+..+.+++..    ..+.+..+.. ...+..+.|+|||+++++++.|+.|.+||+.  +++.+.++.... .
T Consensus       168 ~~~V~~~~~~~V~viD~~----t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~  241 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGS----TYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E  241 (567)
T ss_dssp             EEEEEETTTTEEEEEETT----TCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred             eEEEEeCCCCeEEEEECC----CCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence            344444455555555442    3456666653 3356799999999999999999999999995  888888777543 4


Q ss_pred             EEEEEEc----CCCCEEEEEeC-CCcEEEEECCCCeeEEEecc----------cCC-ceEEEEEecCCC-EEEEEECCCc
Q 011457          220 VRGLAVS----SKHTYMFSAGD-DKQVKCWDLEQNKVIRSYHG----------HLS-GVYCLGLHPTID-ILLTGGRDSV  282 (485)
Q Consensus       220 V~~l~~s----~~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~-~l~sg~~dg~  282 (485)
                      ...++|+    |+|++++++++ +++|.++|..+.+.++.+..          |.. .+..+..++++. +++....+|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6789999    69998887764 59999999999999887642          112 678888888766 4555566799


Q ss_pred             EEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeEEeEecc-CCCc--eEEEE-ECCC-C
Q 011457          283 CRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKTMLTLTH-HKKS--VRAMA-LHPT-E  355 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~-~~~~--v~~l~-~~p~-~  355 (485)
                      |.++|....+...... ........+.|+|++++|+++. .++.|.++|+.+++.+..+.. ...+  -+.+. ++|+ +
T Consensus       322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g  401 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  401 (567)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence            9999998764332211 2344677889999999987766 578899999999988776644 2111  11222 5787 4


Q ss_pred             CEEEEEc--CCCEEEEECCC-------CceeeeeccCCcccEEEEEeCCCC-eEEEEeC-------CCcEEEEeCCCCcc
Q 011457          356 DCFASAS--AENIKKFNLPK-------GEFLHNMLSQQKTIINSMAVNEEG-VLATGGD-------NGSLWFWDWKSGHN  418 (485)
Q Consensus       356 ~~l~~~~--~~~i~i~d~~~-------~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~-------dg~I~iwd~~~~~~  418 (485)
                      ..+++..  ++.|.++|...       .+.+..+... ...-..+..+|++ ++.+...       .++|.++|+.+.+.
T Consensus       402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  480 (567)
T 1qks_A          402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTG  480 (567)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred             cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccc
Confidence            4555553  24499999987       5566665332 2222346689998 6666552       35999999987611


Q ss_pred             ---cccceeeec---cCCCCCCccEEEEEEccCCCEEEEEE-----CCCcEEEecCCCCCCCCCCC
Q 011457          419 ---FQQAQTIVQ---PGSLDSEAGIYALSYDVTGSRLVTCE-----ADKTIKMWREDETATPETHP  473 (485)
Q Consensus       419 ---~~~~~~~~~---~~~~~~~~~V~~l~~s~~g~~L~s~~-----~Dg~I~iW~~~~~~~~~~~~  473 (485)
                         ...+.....   .+.......+..+.|+++|+++..+.     .++.|.|+|..+.......+
T Consensus       481 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          481 DGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             SSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence               111111100   00111235689999999999888764     37999999988876554443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=3.6e-15  Score=144.40  Aligned_cols=222  Identities=13%  Similarity=0.127  Sum_probs=159.3

Q ss_pred             cceEEEEEccCCCEEEEEeCC---C--eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC------------
Q 011457          176 GWVRSVAFDHSNTWFCTGSAD---R--TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD------------  238 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~d---g--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------------  238 (485)
                      ..+.+++|+|||++|+.++.+   +  .|.+|++.+++.......+ . +..++|+|+++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            568899999999999887754   2  4888899888766554433 4 9999999999988887642            


Q ss_pred             ---------------CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-------cEEEEECCCCceEEE
Q 011457          239 ---------------KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-------VCRVWDIRTKMQIFA  296 (485)
Q Consensus       239 ---------------g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-------~i~iwd~~~~~~~~~  296 (485)
                                     ..|.+||+.+++.+..+.. . .+..+.|+|+| +++++..++       ...+|.+.+++ ...
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~  212 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEK  212 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEE
Confidence                           5799999998887555554 3 78899999999 888776652       34455444443 444


Q ss_pred             eccCCccEEEEEEcCCCCEEEEEeCC--------CCEEEEECCCCeEEeEeccCCCceEE-EEECCCCCEEEEEcCCC-E
Q 011457          297 LAGHDNTVCSVFTRPTDPQVVTGSHD--------STIKFWDLRYGKTMLTLTHHKKSVRA-MALHPTEDCFASASAEN-I  366 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~~~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~~~~~~~-i  366 (485)
                      +..+ ..+..+  +|+|++|+.++.+        ..|.+||  +++.......+...+.. +.|+ ++ ++++++.++ +
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~  285 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV  285 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence            4444 555554  8999988877754        3688888  55554444555677886 8999 88 777777766 7


Q ss_pred             EEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcE-EEEeCC
Q 011457          367 KKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSL-WFWDWK  414 (485)
Q Consensus       367 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I-~iwd~~  414 (485)
                      .+| +.+++. ..+.. +...+..+.+++ .++++++.++.. .+|.+.
T Consensus       286 ~l~-~~~g~~-~~~~~-~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          286 NLY-IWDGEI-KPIAK-GRHWIMGFDVDE-IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEE-EESSSE-EEEEC-SSSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred             EEE-EcCCce-EEEec-CCCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence            788 765654 33333 367789999999 877777777654 677665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.70  E-value=5.2e-15  Score=137.89  Aligned_cols=241  Identities=11%  Similarity=-0.006  Sum_probs=169.6

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457          219 QVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  297 (485)
                      ...++++++++++++ +...++.|.+||..+.........+...+.++++.++++++++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999998666 446789999999866543332233445688999999998655555 889999998765443222


Q ss_pred             ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCce
Q 011457          298 AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEF  376 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~  376 (485)
                      ......+..+++++++.++++...++.|.+||..+.............+.++++++++.++++...+ .|.+|+......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            2233678999999999877777778899999876554433222233467889999999977776654 499999877654


Q ss_pred             eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC
Q 011457          377 LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD  455 (485)
Q Consensus       377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D  455 (485)
                      .... ......+..++++++| ++++...++.|.+||........ ..       ..+...+.+++++++|+.+++...+
T Consensus       184 ~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-------~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          184 VVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-------FTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             EECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-------CCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             Eeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-------cCCCCCceeEEECCCCCEEEEECCC
Confidence            4332 2233568899999998 55555567899999986543221 10       1123568999999999988888899


Q ss_pred             CcEEEecCCCCCCC
Q 011457          456 KTIKMWREDETATP  469 (485)
Q Consensus       456 g~I~iW~~~~~~~~  469 (485)
                      +.|++|+.......
T Consensus       255 ~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          255 DRVVKLTSLEHHHH  268 (270)
T ss_dssp             TEEEEECCCGGGSC
T ss_pred             CEEEEEcCCCcccc
Confidence            99999999876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=6.1e-16  Score=164.55  Aligned_cols=272  Identities=9%  Similarity=-0.026  Sum_probs=181.9

Q ss_pred             cCCCEEEEEeCCC-----eEEEEECCCCceEEEEc------ccccCEEEEEEcCCCCEEEE-----EeCCCcEEEEECCC
Q 011457          185 HSNTWFCTGSADR-----TIKIWDVAKGTLKLTLT------GHIEQVRGLAVSSKHTYMFS-----AGDDKQVKCWDLEQ  248 (485)
Q Consensus       185 p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s-----~~~dg~V~iwd~~~  248 (485)
                      |+|++++....++     .|.+.+...++....+.      +|...+..++|||||++|+.     |+.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5677766655433     34445544554433332      34457899999999999883     34457899999999


Q ss_pred             CeeEEEecccCCce--EEEEEecCCCEEEEEECCCc-------------EEEEECCCCc----eEEEeccCCccEEEEEE
Q 011457          249 NKVIRSYHGHLSGV--YCLGLHPTIDILLTGGRDSV-------------CRVWDIRTKM----QIFALAGHDNTVCSVFT  309 (485)
Q Consensus       249 ~~~~~~~~~h~~~v--~~l~~~~~~~~l~sg~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~  309 (485)
                      ++.+.  ..+...+  ..++|+|||+.|+.++.|..             |++|++.++.    .+.....+...+.++.|
T Consensus       157 g~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          157 GEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             CCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            88651  1122222  68999999999999998876             9999998876    33333345568899999


Q ss_pred             cCCCCEEEEEeCCC----CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC----CEEEEECCCCce--eee
Q 011457          310 RPTDPQVVTGSHDS----TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE----NIKKFNLPKGEF--LHN  379 (485)
Q Consensus       310 ~~~~~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~----~i~i~d~~~~~~--~~~  379 (485)
                      +|+|++|+.++.++    .|.+||..+++ ...+..+...+....+ +++.+++....+    .|.+|++.++..  ...
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~  312 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE  312 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence            99999998877666    67777765554 3344444555566666 555544444422    299999977653  233


Q ss_pred             eccCC-cccEEEEEeCCCCeEEEEeCCCcEEEEeCC-CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE----
Q 011457          380 MLSQQ-KTIINSMAVNEEGVLATGGDNGSLWFWDWK-SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE----  453 (485)
Q Consensus       380 ~~~~~-~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~----  453 (485)
                      +...+ ...+..+.++.+.++++...||..++|.+. ++.....+.       ......|..++++++++.|+...    
T Consensus       313 l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~~v~~~~~s~d~~~l~~~~ss~~  385 (695)
T 2bkl_A          313 IVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQ-------LPGVGAASNLMGLEDLDDAYYVFTSFT  385 (695)
T ss_dssp             EECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECC-------CSSSSEECCCBSCTTCSEEEEEEEETT
T ss_pred             EecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEec-------CCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence            33333 556788888844488888899988888654 343322221       12345677888999998777433    


Q ss_pred             CCCcEEEecCCCCC
Q 011457          454 ADKTIKMWREDETA  467 (485)
Q Consensus       454 ~Dg~I~iW~~~~~~  467 (485)
                      ..++|++|++.++.
T Consensus       386 ~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          386 TPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEEEEETTTCC
T ss_pred             CCCEEEEEECCCCc
Confidence            34789999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=1.7e-14  Score=138.98  Aligned_cols=242  Identities=10%  Similarity=-0.008  Sum_probs=179.6

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      .....+++. ++..+++...++.|.+||..+++.+.++. .......+++++++..+++...++.|.+||+.+++....+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            345677774 45556666667999999999999988885 3467899999988854444448999999999999988777


Q ss_pred             cccC-----CceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC------
Q 011457          256 HGHL-----SGVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD------  322 (485)
Q Consensus       256 ~~h~-----~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d------  322 (485)
                      ....     .....+++ . +..|+++.  .++.|.+||+.+++.+..+.. ......+.+++++++++++..+      
T Consensus       122 ~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             EcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcc
Confidence            5332     14556777 3 44555555  489999999999988877764 3345688899999877666554      


Q ss_pred             ----CCEEEEECCCCeEEeEeccC-CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeee-eccCCcccEEEEEeCC-
Q 011457          323 ----STIKFWDLRYGKTMLTLTHH-KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHN-MLSQQKTIINSMAVNE-  395 (485)
Q Consensus       323 ----g~I~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~-  395 (485)
                          +.|.+||..+++....+... ......++++|++..+.++.. .+.+||..+++.... +..........++++| 
T Consensus       199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~  277 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN  277 (328)
T ss_dssp             CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred             ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence                78999999999887766533 346899999999998888766 899999988876422 1222245688999998 


Q ss_pred             CC-eEEEE----eCCCcEEEEeCCCCccccccee
Q 011457          396 EG-VLATG----GDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       396 ~~-~l~sg----~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      ++ ++++.    ..++.|.+||.. ++.+..+..
T Consensus       278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             CCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            45 44454    568999999988 877766653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=2.2e-13  Score=128.48  Aligned_cols=275  Identities=8%  Similarity=-0.024  Sum_probs=189.9

Q ss_pred             cceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE--ecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 011457          130 SAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI--SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG  207 (485)
Q Consensus       130 ~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l--~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~  207 (485)
                      ..+.++..++++.+..+...+..+..|...      ..+..+  ..+...+.++++++++.++++...++.|..||.. +
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~------~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD------GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC------CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            344556666777766554444455555432      112222  2355789999999999988887778899999976 4


Q ss_pred             ceE-EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEECCCcEEE
Q 011457          208 TLK-LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       208 ~~~-~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      +.. ..+......+..+++.+++.++++...++.|.+||. +++.... .......+..+++.++++++++...++.|..
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence            332 222234567899999999988777777889999998 5554432 2334567899999999987777767889999


Q ss_pred             EECCCCceEEE-eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcC
Q 011457          286 WDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       286 wd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                      ||. +++.... +......+..+++++++.++++...++.|.+||. +++.... .......+.+++++++|.++++...
T Consensus       167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence            999 6654432 3334557889999999987777667889999999 6654332 2334467899999999997777644


Q ss_pred             -CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457          364 -ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       364 -~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~  416 (485)
                       ++|..|+. ++.............+.++.+ +++.|..++..+.|..++.+++
T Consensus       245 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          245 ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred             CceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence             45999998 454332212334466888889 8886666665778888887654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=5.4e-14  Score=144.65  Aligned_cols=274  Identities=14%  Similarity=0.103  Sum_probs=197.7

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEecccCCc
Q 011457          184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE--QNKVIRSYHGHLSG  261 (485)
Q Consensus       184 sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~--~~~~~~~~~~h~~~  261 (485)
                      ++.+.++++...++.|.++|..+++.+.++... ..+..+.|+|+++++++++.|+.|.+||+.  +++.+..+... ..
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~  241 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SE  241 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CC
Confidence            355667778888999999999999999888743 457799999999999999999999999995  88888888743 34


Q ss_pred             eEEEEEe----cCCCEEEEEEC-CCcEEEEECCCCceEEEecc----------C-CccEEEEEEcCCCCEEE-EEeCCCC
Q 011457          262 VYCLGLH----PTIDILLTGGR-DSVCRVWDIRTKMQIFALAG----------H-DNTVCSVFTRPTDPQVV-TGSHDST  324 (485)
Q Consensus       262 v~~l~~~----~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~----------~-~~~v~~l~~~~~~~~l~-s~s~dg~  324 (485)
                      ...++|+    |+|+++++++. ++.|.++|..+.+.+..+..          | ...+..+..++++..++ ....+|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6799999    69998887766 58999999999998877652          1 22678888888876554 4456799


Q ss_pred             EEEEECCCCeEEeEe-ccCCCceEEEEECCCCCEEEEEcC--CCEEEEECCCCceeeeecc-C---Ccc-cEEEEEeCCC
Q 011457          325 IKFWDLRYGKTMLTL-THHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFLHNMLS-Q---QKT-IINSMAVNEE  396 (485)
Q Consensus       325 I~iwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~-~---~~~-~i~~~~~~~~  396 (485)
                      |.++|....+.+... .........+.|+|++++|+++..  +.|.++|..+++....+.. +   |.+ .++  .++|+
T Consensus       322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~p~  399 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVHPT  399 (567)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEETT
T ss_pred             EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee--eECCC
Confidence            999998875432221 123445778999999998877654  3499999999987766543 2   211 222  25776


Q ss_pred             C--eEEEEe-CCCcEEEEeCCCCcc----cccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-------CCcEEEec
Q 011457          397 G--VLATGG-DNGSLWFWDWKSGHN----FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-------DKTIKMWR  462 (485)
Q Consensus       397 ~--~l~sg~-~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-------Dg~I~iW~  462 (485)
                      +  +++++. .++.|.++|..+++.    ....+.+...     ...-..+..+|++++|.+...       .++|.|+|
T Consensus       400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-----g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-----GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-----CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-----CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            4  444443 468999999987332    2222222111     112233668999999998763       45999999


Q ss_pred             CCCC
Q 011457          463 EDET  466 (485)
Q Consensus       463 ~~~~  466 (485)
                      +.+.
T Consensus       475 ~~~~  478 (567)
T 1qks_A          475 IKAM  478 (567)
T ss_dssp             GGGC
T ss_pred             CCcc
Confidence            9876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.69  E-value=6.9e-15  Score=142.52  Aligned_cols=284  Identities=13%  Similarity=0.051  Sum_probs=200.7

Q ss_pred             EccCCCEEEEEeC-----CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 011457          183 FDHSNTWFCTGSA-----DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLE  247 (485)
Q Consensus       183 ~sp~~~~l~tgs~-----dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~  247 (485)
                      ..|+++.+++...     ++.|.+.|..+++.+.++.....+ . ++++|++++++++.          .++.|.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            3577877777655     679999999999999988765555 4 99999999988875          36789999999


Q ss_pred             CCeeEEEecccC-------CceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          248 QNKVIRSYHGHL-------SGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       248 ~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      +++.+..+.-..       .....+.|+|||++++++..  ++.|.++|+.+++.+.++....  . ...+......+++
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~  194 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM  194 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence            999998875321       24567999999999998875  6899999999999988885322  1 2233334567778


Q ss_pred             EeCCCCEEEEECCC-CeEEeEeccC----CCceE-EEEE-CCCCCEEEEEcCCCEEEEECCCCc--eeeeec--c-----
Q 011457          319 GSHDSTIKFWDLRY-GKTMLTLTHH----KKSVR-AMAL-HPTEDCFASASAENIKKFNLPKGE--FLHNML--S-----  382 (485)
Q Consensus       319 ~s~dg~I~iwd~~~-~~~~~~~~~~----~~~v~-~l~~-~p~~~~l~~~~~~~i~i~d~~~~~--~~~~~~--~-----  382 (485)
                      .+.||.+.+.++.. ++........    ..++. ...| .++|++++....+.++++|...+.  ....+.  .     
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence            88899999999876 5543322111    12221 2345 467876666665569999997654  222221  0     


Q ss_pred             -C-CcccEEEEEeCCCC-eEEEEeC----------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-E
Q 011457          383 -Q-QKTIINSMAVNEEG-VLATGGD----------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-R  448 (485)
Q Consensus       383 -~-~~~~i~~~~~~~~~-~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~  448 (485)
                       + .......+.+++++ .+++...          .+.|.++|+.+++.+..+..         ...+..+.+++|++ +
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---------g~~~~~lavs~D~~~~  345 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---------GHEIDSINVSQDEKPL  345 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---------EEEECEEEECSSSSCE
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---------CCCcceEEECCCCCeE
Confidence             0 01223346667777 4444332          25799999999998877764         23578999999997 6


Q ss_pred             EEEEE-CCCcEEEecCCCCCCCCCCCCCCCCCC
Q 011457          449 LVTCE-ADKTIKMWREDETATPETHPLNFKPPK  480 (485)
Q Consensus       449 L~s~~-~Dg~I~iW~~~~~~~~~~~~~~~~p~~  480 (485)
                      |+++. .++.|.++|..+.+...+.+..-.|..
T Consensus       346 ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~  378 (386)
T 3sjl_D          346 LYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ  378 (386)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEecCCCCCce
Confidence            76654 589999999999887777776666554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.69  E-value=2.7e-13  Score=132.61  Aligned_cols=277  Identities=9%  Similarity=-0.039  Sum_probs=188.5

Q ss_pred             cCCCEEEEEeC--CC---eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 011457          185 HSNTWFCTGSA--DR---TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQN  249 (485)
Q Consensus       185 p~~~~l~tgs~--dg---~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~  249 (485)
                      |+++++++...  ..   .|.+||..+++.+.++.....+  .++++|++++++++.          .++.|.+||..++
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            45555555442  22   8999999999998888754444  999999999999886          3678999999999


Q ss_pred             eeEEEeccc-------CCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEE-eccCCccEEEEEEcCCC-CEEEE
Q 011457          250 KVIRSYHGH-------LSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTD-PQVVT  318 (485)
Q Consensus       250 ~~~~~~~~h-------~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~-~~l~s  318 (485)
                      +.+..+...       ......+.|+|||++|+++..  ++.|.++| .+++.+.. +.. ...   +.+.+++ ..+++
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~  182 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYL  182 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEE
Confidence            888876422       123568999999999998875  57899999 99988877 542 222   3344544 45667


Q ss_pred             EeCCCCEEEEECCCCeEEeEec-----cCCCce-EEEEECCCCCE-EEEEcCCCEEEEECCCCc--eeeeeccC------
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLT-----HHKKSV-RAMALHPTEDC-FASASAENIKKFNLPKGE--FLHNMLSQ------  383 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~-----~~~~~v-~~l~~~p~~~~-l~~~~~~~i~i~d~~~~~--~~~~~~~~------  383 (485)
                      .+.||.+.++|. +++......     ....++ ....+.+++.. ++....+.+.++|+..+.  .+..+...      
T Consensus       183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~  261 (373)
T 2mad_H          183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA  261 (373)
T ss_pred             EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence            788999999999 877663322     111221 22345555443 444444458888986553  22221100      


Q ss_pred             ---CcccEEEEEeCCCC-eEEEEeC----------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-E
Q 011457          384 ---QKTIINSMAVNEEG-VLATGGD----------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-R  448 (485)
Q Consensus       384 ---~~~~i~~~~~~~~~-~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~  448 (485)
                         .......+.+++++ .+++...          .+.|.++|..+++.+..+..         .....++.|++||+ +
T Consensus       262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---------g~~p~~i~~s~Dg~~~  332 (373)
T 2mad_H          262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---------GHDVDAISVAQDGGPD  332 (373)
T ss_pred             cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---------CCCcCeEEECCCCCeE
Confidence               01223447788887 5555432          35799999999887776642         22478899999999 7


Q ss_pred             EEEEE-CCCcEEEecCCCCCCCCC-CCCCCCC
Q 011457          449 LVTCE-ADKTIKMWREDETATPET-HPLNFKP  478 (485)
Q Consensus       449 L~s~~-~Dg~I~iW~~~~~~~~~~-~~~~~~p  478 (485)
                      |+++. .++.|.+||..+.+.... .+..-.|
T Consensus       333 l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P  364 (373)
T 2mad_H          333 LYALSAGTEVLHIYDAGAGDQDQSTVELGSGP  364 (373)
T ss_pred             EEEEcCCCCeEEEEECCCCCEEeeecCCCCCC
Confidence            77777 589999999998887665 4444444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.69  E-value=1.3e-15  Score=162.08  Aligned_cols=240  Identities=10%  Similarity=-0.032  Sum_probs=167.5

Q ss_pred             cCCcceEEEEEccCCCEEE-----EEeCCCeEEEEECCCCceEEEEcccccCE--EEEEEcCCCCEEEEEeCCCc-----
Q 011457          173 GHLGWVRSVAFDHSNTWFC-----TGSADRTIKIWDVAKGTLKLTLTGHIEQV--RGLAVSSKHTYMFSAGDDKQ-----  240 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~-----tgs~dg~I~iwd~~~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~~~dg~-----  240 (485)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            5666899999999999998     44455789999999988641  1122222  67899999999999988776     


Q ss_pred             --------EEEEECCCCe----eEEEecccCCceEEEEEecCCCEEEEEECCC----cEEEEECCCCceEEEeccCCccE
Q 011457          241 --------VKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS----VCRVWDIRTKMQIFALAGHDNTV  304 (485)
Q Consensus       241 --------V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~v  304 (485)
                              |++|++.++.    ++.....+...+..+.|+|||++|+.++.++    .|.+||..+++ ...+..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence                    9999998875    4444445667889999999999888887766    67777765554 34444555566


Q ss_pred             EEEEEcCCCCEEEEEe---CCCCEEEEECCCCeE---EeEeccC-CCceEEEEECCCCCEEEEEcCCC---EEEEECCCC
Q 011457          305 CSVFTRPTDPQVVTGS---HDSTIKFWDLRYGKT---MLTLTHH-KKSVRAMALHPTEDCFASASAEN---IKKFNLPKG  374 (485)
Q Consensus       305 ~~l~~~~~~~~l~s~s---~dg~I~iwd~~~~~~---~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~  374 (485)
                      ....+ +++.+++.+.   .++.|.+||+.++..   ...+..+ ...+..++++ ++.++++...++   +.++++ ++
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g  351 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-KG  351 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET-TC
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CC
Confidence            66666 5565444433   257899999987653   2333333 4567888888 667777777766   444454 35


Q ss_pred             ceeeeeccCCcccEEEEEeCCCC-eEE-EEe---CCCcEEEEeCCCCcc
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEG-VLA-TGG---DNGSLWFWDWKSGHN  418 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~-~l~-sg~---~dg~I~iwd~~~~~~  418 (485)
                      +....+.......+..+.+++++ .++ +.+   ..+.|++||+.+++.
T Consensus       352 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          352 KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            55555433446667788888887 444 332   247899999988763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.68  E-value=2.4e-14  Score=134.20  Aligned_cols=217  Identities=11%  Similarity=0.088  Sum_probs=169.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEecccC-CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-ccEE
Q 011457          228 KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-NTVC  305 (485)
Q Consensus       228 ~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~  305 (485)
                      .+++|++++.|+.|.+||.++++.+.++..+. ..+.++.+.|+|++|+  +.++.|..||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            45789999999999999999999999998765 4788999999999888  45788999999 899999988653 5788


Q ss_pred             EEEEcCCCCEEEEEeC-CCCEEEEECCCCeEEeEecc------CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCcee
Q 011457          306 SVFTRPTDPQVVTGSH-DSTIKFWDLRYGKTMLTLTH------HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFL  377 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~------~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~  377 (485)
                      ++.+.++++++++.+. ++.|..+|. +++.+..+..      +......+.+.++|.++++...++ |..||.. |+.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            9999999999999887 788888885 6777766542      122455677899999999888776 9999987 9998


Q ss_pred             eeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457          378 HNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       378 ~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      .++...  .....+...+++ +++++..++.|..+|..+|+.+..+......+  ..-..+..+...++|..+++..
T Consensus       159 w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~--~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          159 NSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG--VQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS--CCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC--ccccccccceEcCCCCEEEEec
Confidence            887543  234456667777 77777778899999999999877765321110  0123478888889998888773

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=1.4e-14  Score=155.17  Aligned_cols=273  Identities=12%  Similarity=0.049  Sum_probs=180.3

Q ss_pred             cCCCEEEEEeCCCe---EEEE--ECC---CCceEEEEc------ccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEE
Q 011457          185 HSNTWFCTGSADRT---IKIW--DVA---KGTLKLTLT------GHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWD  245 (485)
Q Consensus       185 p~~~~l~tgs~dg~---I~iw--d~~---~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd  245 (485)
                      |+|++++....++.   -.+|  +..   .++....+.      +|...+..++|+|||++|+.+..+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            77887776654432   4444  443   333333221      233468899999999999877543     4699999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc--------------EEEEECCCCce--EEEec--cCCccEEEE
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV--------------CRVWDIRTKMQ--IFALA--GHDNTVCSV  307 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~--------------i~iwd~~~~~~--~~~~~--~~~~~v~~l  307 (485)
                      +.+++.+.... +...+..++|+|| +.|+.++.++.              |++|++.++..  ...+.  .+...+..+
T Consensus       196 l~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          196 VADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             TTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            99998765421 2222357899999 98888887654              89999987652  22232  333468899


Q ss_pred             EEcCCCCEEEEEeCCC-----CEEEEECCCC--eEEeEeccCCCceEEEEECCCCCEEEEEcCC-C----EEEEECCCC-
Q 011457          308 FTRPTDPQVVTGSHDS-----TIKFWDLRYG--KTMLTLTHHKKSVRAMALHPTEDCFASASAE-N----IKKFNLPKG-  374 (485)
Q Consensus       308 ~~~~~~~~l~s~s~dg-----~I~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~----i~i~d~~~~-  374 (485)
                      .|+|+|++|+..+.++     .|++||+.++  +....+..+...+.... +|++..|+..+.. .    |.+|++.++ 
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~  352 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST  352 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence            9999999988777544     7999999877  31445544444444443 4888877766543 1    999998875 


Q ss_pred             ceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC-CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK-SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      .....+...+...+..+.+..+.++++...||..++|.+. ++.....+.       ......+..++++++++.|+...
T Consensus       353 ~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~~v~~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          353 PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVS-------LPGIGSASGLSGRPGDRHAYLSF  425 (741)
T ss_dssp             CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECB-------CSSSCEEEEEECCBTCSCEEEEE
T ss_pred             cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeecc-------CCCCeEEEEeecCCCCCEEEEEE
Confidence            2445555555666777888744478888889987777554 343322221       12356688999999988666332


Q ss_pred             ----CCCcEEEecCCCCC
Q 011457          454 ----ADKTIKMWREDETA  467 (485)
Q Consensus       454 ----~Dg~I~iW~~~~~~  467 (485)
                          ..++|++|++.++.
T Consensus       426 ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          426 SSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EETTEEEEEEEEETTTTE
T ss_pred             cCCCCCCEEEEEECCCCc
Confidence                34789999987654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=4.5e-14  Score=151.23  Aligned_cols=240  Identities=13%  Similarity=0.026  Sum_probs=165.2

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCC-----CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCc-------
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSAD-----RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQ-------  240 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~-------  240 (485)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            344578899999999999887654     46999999999875431 12222357899999 98888876654       


Q ss_pred             -------EEEEECCCCe----eEEEecccCCceEEEEEecCCCEEEEEECCC-----cEEEEECCCC--ceEEEeccCCc
Q 011457          241 -------VKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-----VCRVWDIRTK--MQIFALAGHDN  302 (485)
Q Consensus       241 -------V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~--~~~~~~~~~~~  302 (485)
                             |++|++.++.    .+.....+...+..+.|+|||++|+..+.++     .|++||+.++  +....+..+..
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                   9999997765    3333333444688999999999888877544     8999999877  41445555555


Q ss_pred             cEEEEEEcCCCCEEEEEeCC----CCEEEEECCCC--eEEeEeccCCCceEEEEECCCCCEEEEEcCCC---EEEEECCC
Q 011457          303 TVCSVFTRPTDPQVVTGSHD----STIKFWDLRYG--KTMLTLTHHKKSVRAMALHPTEDCFASASAEN---IKKFNLPK  373 (485)
Q Consensus       303 ~v~~l~~~~~~~~l~s~s~d----g~I~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~  373 (485)
                      .+.... ++++..|+..+.+    +.|.+||+.++  .....+..+...+..+.++ ++.++++...++   |.++++ +
T Consensus       318 ~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~  394 (741)
T 1yr2_A          318 AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-D  394 (741)
T ss_dssp             SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-T
T ss_pred             ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-C
Confidence            555553 4888888887764    44999999874  3334444455567778887 556667766665   455565 4


Q ss_pred             CceeeeeccCCcccEEEEEeCCCC-eEE-EEe---CCCcEEEEeCCCCc
Q 011457          374 GEFLHNMLSQQKTIINSMAVNEEG-VLA-TGG---DNGSLWFWDWKSGH  417 (485)
Q Consensus       374 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~-sg~---~dg~I~iwd~~~~~  417 (485)
                      +.....+.......+..+.+++++ .|+ +.+   ..+.|++||+.+++
T Consensus       395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            555555443446678889999887 444 332   34789999998876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.61  E-value=1.1e-12  Score=124.83  Aligned_cols=240  Identities=9%  Similarity=0.131  Sum_probs=169.2

Q ss_pred             EecCCcceEEEEEccCCCEEEE-------EeCCCeEEEEECCCCceEEEEc----ccccCEEEEEEcCC-CCEEEEEeCC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCT-------GSADRTIKIWDVAKGTLKLTLT----GHIEQVRGLAVSSK-HTYMFSAGDD  238 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~t-------gs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~s~~-~~~l~s~~~d  238 (485)
                      +........+++|++++.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++. .+
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~   91 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MR   91 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TT
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CC
Confidence            3445566789999999988888       6778999999988887643222    25567899999999 6654444 44


Q ss_pred             CcEEEEECCCCeeEEE-ecc----cCCceEEEEEecCCCEEEEEECC---------------CcEEEEECCCCceEEEec
Q 011457          239 KQVKCWDLEQNKVIRS-YHG----HLSGVYCLGLHPTIDILLTGGRD---------------SVCRVWDIRTKMQIFALA  298 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~l~sg~~d---------------g~i~iwd~~~~~~~~~~~  298 (485)
                      +.|.+||.+ ++.... ...    ....+.++++.++|+++++...+               +.|..||.. ++... +.
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~  168 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VD  168 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ec
Confidence            579999998 765443 221    12458899999999877776554               567777765 44333 32


Q ss_pred             cCCccEEEEEEc----CCCCEEEEE-eCCCCEEEEECC-CCe-----EEeEeccCC-CceEEEEECCCCCEEEEEcCC-C
Q 011457          299 GHDNTVCSVFTR----PTDPQVVTG-SHDSTIKFWDLR-YGK-----TMLTLTHHK-KSVRAMALHPTEDCFASASAE-N  365 (485)
Q Consensus       299 ~~~~~v~~l~~~----~~~~~l~s~-s~dg~I~iwd~~-~~~-----~~~~~~~~~-~~v~~l~~~p~~~~l~~~~~~-~  365 (485)
                      .+......++++    ++++.++++ ..++.|.+||+. .++     ....+..+. ..+..++++++|.++++...+ +
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            334456889999    998766555 567899999986 443     222333333 567889999999988877554 5


Q ss_pred             EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEE-eCCCcEEEEeCCC
Q 011457          366 IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATG-GDNGSLWFWDWKS  415 (485)
Q Consensus       366 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg-~~dg~I~iwd~~~  415 (485)
                      |.+|+..+++.+..+ ..+...+.++++++++ .|+++ ..++.|..|++..
T Consensus       249 i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999998877766554 3344678899999998 46555 4568999999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=6e-12  Score=118.56  Aligned_cols=270  Identities=8%  Similarity=-0.006  Sum_probs=181.3

Q ss_pred             ecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE-E
Q 011457          134 STSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-T  212 (485)
Q Consensus       134 ~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~-~  212 (485)
                      .+..++++.+..+...+..+..+...   ..+.. ..+..+...+.++++++++.++++...++.|..||.. ++... .
T Consensus        24 ~i~~d~~g~l~v~~~~~~~v~~~~~~---~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~   98 (300)
T 2qc5_A           24 GITSSEDGKVWFTQHKANKISSLDQS---GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP   98 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT---SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             eeeECCCCCEEEEcCCCCeEEEECCC---CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence            34444555555444333444444332   11111 1122345679999999999987777668899999987 55432 2


Q ss_pred             EcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK  291 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  291 (485)
                      +......+.++++.+++.++++...++.|..||.. ++.... +......+.++++.++++++++...++.|..||. ++
T Consensus        99 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  176 (300)
T 2qc5_A           99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG  176 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC
Confidence            23244678999999999887777668899999987 555432 3334567899999999996666666789999998 55


Q ss_pred             ceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcC-CCEEE
Q 011457          292 MQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASA-ENIKK  368 (485)
Q Consensus       292 ~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~-~~i~i  368 (485)
                      +... ........+..+++.+++.+.++....+.|.+||. +++.... +......+.++++++++.++++... +.|..
T Consensus       177 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  255 (300)
T 2qc5_A          177 KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGR  255 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence            4433 22234457899999999977776666778999998 4544332 3334567899999999997777655 44999


Q ss_pred             EECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          369 FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       369 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                      |+. ++.............+.++.+.++|.|..++.+ .|..+|.
T Consensus       256 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p  298 (300)
T 2qc5_A          256 ITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLNL  298 (300)
T ss_dssp             ECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred             ECC-CCcEEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence            998 455433222333456788899998866666654 7776664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.59  E-value=5.7e-13  Score=131.37  Aligned_cols=267  Identities=12%  Similarity=0.055  Sum_probs=187.6

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEeccc-------C
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQNKVIRSYHGH-------L  259 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~~~~~~~~~h-------~  259 (485)
                      +.|.++|..+++.+.++..-..+  .++++|++++|+++.          .++.|.++|..+++.+..+.-.       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            69999999999999998865566  899999999988876          3679999999999998887521       1


Q ss_pred             CceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEE
Q 011457          260 SGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTM  336 (485)
Q Consensus       260 ~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~  336 (485)
                      .....+.|+|||++++++..  ++.|.+.|+.+++.+..+.--..    ....|+ ...+++.+.||.+.+.++.+++..
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~  252 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETK  252 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence            33567899999999999875  57899999999998888763221    222333 356677788888888888666554


Q ss_pred             eE----eccCCCce-EEEEECCCCCEEEEEcCCC-EEEEECCCCceee--eeccC---------CcccEEEEEeCCCC-e
Q 011457          337 LT----LTHHKKSV-RAMALHPTEDCFASASAEN-IKKFNLPKGEFLH--NMLSQ---------QKTIINSMAVNEEG-V  398 (485)
Q Consensus       337 ~~----~~~~~~~v-~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~--~~~~~---------~~~~i~~~~~~~~~-~  398 (485)
                      ..    +.....++ ..+.+.+++..++..+..+ +.+.|...+....  .+...         .......+.+++++ .
T Consensus       253 ~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r  332 (426)
T 3c75_H          253 VTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDR  332 (426)
T ss_dssp             EEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred             EEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCE
Confidence            32    11111221 2356788887666555555 9999986554221  11000         00111236788887 5


Q ss_pred             EEEEeC----------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEE-CCCcEEEecCCCC
Q 011457          399 LATGGD----------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCE-ADKTIKMWREDET  466 (485)
Q Consensus       399 l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~-~Dg~I~iW~~~~~  466 (485)
                      +++...          .+.|.++|..+.+.+..+..         ......+.|++||+ +|+++. .++.|.|+|..+.
T Consensus       333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            444432          35799999999988887753         12477899999999 888888 5999999999998


Q ss_pred             CCCCCC-CCCCCC
Q 011457          467 ATPETH-PLNFKP  478 (485)
Q Consensus       467 ~~~~~~-~~~~~p  478 (485)
                      +...+. +....|
T Consensus       404 kvv~tI~~vG~~P  416 (426)
T 3c75_H          404 EELRSVDQLGRGP  416 (426)
T ss_dssp             CEEEEECCCSSSC
T ss_pred             CEEEEecCCCCCC
Confidence            876653 444333

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=2.4e-12  Score=122.49  Aligned_cols=239  Identities=7%  Similarity=0.021  Sum_probs=162.6

Q ss_pred             cccCEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCeeEEEec----ccCCceEEEEEecC-CCEEEEEECCCcE
Q 011457          216 HIEQVRGLAVSSKHTYMFS-------AGDDKQVKCWDLEQNKVIRSYH----GHLSGVYCLGLHPT-IDILLTGGRDSVC  283 (485)
Q Consensus       216 h~~~V~~l~~s~~~~~l~s-------~~~dg~V~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~l~sg~~dg~i  283 (485)
                      .-....+++|++++.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++ .++..+.|
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~~l   94 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCCCE
Confidence            3456689999999987777       5678999999988877643222    24567899999999 6544 44545579


Q ss_pred             EEEECCCCceEEE-ecc----CCccEEEEEEcCCCCEEEEEeCC---------------CCEEEEECCCCeEEeEeccCC
Q 011457          284 RVWDIRTKMQIFA-LAG----HDNTVCSVFTRPTDPQVVTGSHD---------------STIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       284 ~iwd~~~~~~~~~-~~~----~~~~v~~l~~~~~~~~l~s~s~d---------------g~I~iwd~~~~~~~~~~~~~~  343 (485)
                      .+||.. ++.... ...    ....+.+++++++++++++...+               +.|..||.. ++.... ....
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~  171 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAF  171 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCC
Confidence            999998 654332 221    12357899999999877776654               567777765 544332 2233


Q ss_pred             CceEEEEEC----CCCCEEEEE-cCC-CEEEEECC-CCce-----eeeeccCCc-ccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457          344 KSVRAMALH----PTEDCFASA-SAE-NIKKFNLP-KGEF-----LHNMLSQQK-TIINSMAVNEEG-VLATGGDNGSLW  409 (485)
Q Consensus       344 ~~v~~l~~~----p~~~~l~~~-~~~-~i~i~d~~-~~~~-----~~~~~~~~~-~~i~~~~~~~~~-~l~sg~~dg~I~  409 (485)
                      .....++++    |++..+..+ ..+ .|.+|+.. +++.     ... ...+. .....++++++| ++++...++.|.
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH-IPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-CCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE-CCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            456889999    999755544 333 49999976 4432     111 12222 567889999999 555555788999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE-ECCCcEEEecCCCCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC-EADKTIKMWREDETA  467 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~-~~Dg~I~iW~~~~~~  467 (485)
                      +||..+++....+..        +...+.+++|+++|+.|+.+ ..++.|..|+.+...
T Consensus       251 ~~d~~~g~~~~~~~~--------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          251 VFGPDGGQPKMRIRC--------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EECTTCBSCSEEEEC--------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEcCCCCcEeEEEeC--------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            999887765443321        23568999999999955544 456889999987543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=4.8e-12  Score=125.44  Aligned_cols=233  Identities=11%  Similarity=0.068  Sum_probs=164.6

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEE
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK--QVKCWDLEQNKVIR  253 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~V~iwd~~~~~~~~  253 (485)
                      .....|+|+++++++++...++.|++||..++......... .... ++|+++++.|+++..++  .|.+|+...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            46789999999998888877899999999888776555543 2333 99999999999988766  79999987665544


Q ss_pred             Ee----cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE----eccCCccE--EEEEEcCC-CCEEEEEeCC
Q 011457          254 SY----HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA----LAGHDNTV--CSVFTRPT-DPQVVTGSHD  322 (485)
Q Consensus       254 ~~----~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~l~~~~~-~~~l~s~s~d  322 (485)
                      .+    ......+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            44    22456678999999555566677889999999987764332    22222222  38999995 5555555667


Q ss_pred             CCEEEEECCCCeEEeEeccC---------------CCceEEEEECCCCCEEEEEc-CCC-EEEEECCCCceeeeeccC--
Q 011457          323 STIKFWDLRYGKTMLTLTHH---------------KKSVRAMALHPTEDCFASAS-AEN-IKKFNLPKGEFLHNMLSQ--  383 (485)
Q Consensus       323 g~I~iwd~~~~~~~~~~~~~---------------~~~v~~l~~~p~~~~l~~~~-~~~-i~i~d~~~~~~~~~~~~~--  383 (485)
                      +.|+.||....  +..+.++               -.....++++++|.++++-. .+. |+.|+..++.... +...  
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g~~~  365 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAGQVD  365 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEECTT
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeCCCC
Confidence            88999997643  2222222               13478999999999777766 555 9999987776432 2221  


Q ss_pred             ------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          384 ------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       384 ------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                                  .-.....+++++++ ++++-..++.|+.+++
T Consensus       366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                        02357889999988 5666666778887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.55  E-value=1.7e-13  Score=133.29  Aligned_cols=171  Identities=14%  Similarity=0.120  Sum_probs=138.8

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-----------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-----------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      .++.+++++...+|++|+.++ +++|++++..           ..... .+.. |+.++|  ++.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999985 6679875433           11222 3556 999999  88999999 889999999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTI  325 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I  325 (485)
                      +.+.........|...+.++.+.+.  .+++++.||.|.+||+.++....    +...|++++|+|+|  ++.|..||.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            9887766666677888888877654  38889999999999999887653    45689999999999  7889999999


Q ss_pred             EEEECCCCeE--EeEe------c---cCCCceEEEEECCCCCEEEEE
Q 011457          326 KFWDLRYGKT--MLTL------T---HHKKSVRAMALHPTEDCFASA  361 (485)
Q Consensus       326 ~iwd~~~~~~--~~~~------~---~~~~~v~~l~~~p~~~~l~~~  361 (485)
                      ++|+...+..  ..++      .   .|...|.+|.|.+++.++++-
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            9999887775  5555      2   356789999999999988863

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=7.9e-12  Score=123.87  Aligned_cols=242  Identities=14%  Similarity=0.126  Sum_probs=165.1

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--cEEEEECCCCceEE
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--VCRVWDIRTKMQIF  295 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~  295 (485)
                      .....|+|+++++++++...++.|++||+.++......... .... ++|+++++.|+++..++  .|.+||...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            46789999999997777777899999999988776555443 3334 99999999999998876  79999987766544


Q ss_pred             Ee----ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeE----eccCCCce--EEEEECCC-CCEEEEEcCC
Q 011457          296 AL----AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT----LTHHKKSV--RAMALHPT-EDCFASASAE  364 (485)
Q Consensus       296 ~~----~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~----~~~~~~~v--~~l~~~p~-~~~l~~~~~~  364 (485)
                      .+    ......+.+++++|++..|+++..++.|+.||..++.....    .......-  ..++|+|+ +.++++....
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            44    22456678899999666676677888999999987754322    22222222  39999996 5555554444


Q ss_pred             C-EEEEECCCCceeeeeccCC--------------cccEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeec
Q 011457          365 N-IKKFNLPKGEFLHNMLSQQ--------------KTIINSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQ  427 (485)
Q Consensus       365 ~-i~i~d~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~  427 (485)
                      + |+.|+....  ...+....              -.....++++++| ++++-. .++.|+.|++.++...........
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~  366 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV  366 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence            4 888886543  22221111              1347899999999 556666 788999999877753221111000


Q ss_pred             cCC------CCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          428 PGS------LDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       428 ~~~------~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .+.      ...-.....++++++|.++++-..++.|+.+++
T Consensus       367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            000      011235889999999988888888889988765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.54  E-value=4.1e-12  Score=123.06  Aligned_cols=252  Identities=13%  Similarity=0.059  Sum_probs=176.1

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEcccc-------cCEEEEEEcC
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGHI-------EQVRGLAVSS  227 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~-------~~V~~l~~s~  227 (485)
                      .+.+..+..-..+ . ++++|||+++++++          .++.|.+||..+++.+.++.-..       .....+.|+|
T Consensus        69 ~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp  146 (386)
T 3sjl_D           69 GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  146 (386)
T ss_dssp             TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence            4566666644445 4 99999999887775          36789999999999988875321       2345789999


Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC-CceEEEeccCC---
Q 011457          228 KHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT-KMQIFALAGHD---  301 (485)
Q Consensus       228 ~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~---  301 (485)
                      +|++++++..  ++.|.++|+.+++.+.++... + . ...+....+.+++.+.||.+.+.++.+ ++.......+.   
T Consensus       147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~  223 (386)
T 3sjl_D          147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  223 (386)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence            9999998864  689999999999999988532 2 1 223333456778889999999999976 55433221111   


Q ss_pred             -ccEE-EEEEc-CCCCEEEEEeCCCCEEEEECCCCe--EEeEecc----------CCCceEEEEECCCCCEEEEEcC---
Q 011457          302 -NTVC-SVFTR-PTDPQVVTGSHDSTIKFWDLRYGK--TMLTLTH----------HKKSVRAMALHPTEDCFASASA---  363 (485)
Q Consensus       302 -~~v~-~l~~~-~~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~----------~~~~v~~l~~~p~~~~l~~~~~---  363 (485)
                       ..+. ...|. ++|++++ .+.+|.|.+.|+....  .+..+..          .......+++++++..++....   
T Consensus       224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~  302 (386)
T 3sjl_D          224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD  302 (386)
T ss_dssp             TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred             cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence             1221 23443 5665444 5668999999997654  2222210          1123445778898887776542   


Q ss_pred             --------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEE-eCCCcEEEEeCCCCccccccee
Q 011457          364 --------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATG-GDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       364 --------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg-~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                              +.|.++|..+++.+..+..+  ..+..+.+++++  +|++. ..++.|.++|..+++.+..+..
T Consensus       303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          303 EWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence                    23999999999999887554  367889999998  45554 4489999999999988777664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=3.2e-11  Score=117.84  Aligned_cols=247  Identities=11%  Similarity=-0.006  Sum_probs=172.6

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccc-------ccCEEEEEEcC
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGH-------IEQVRGLAVSS  227 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~s~  227 (485)
                      .+.+..+..-..+  .++++||+++++++.          .++.|.+||..+++.+..+...       ......+.|+|
T Consensus        57 ~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp  134 (373)
T 2mad_H           57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence            3445555543344  999999999998886          3678999999998888776432       12345899999


Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCeeEEE-ecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEec-----
Q 011457          228 KHTYMFSAGD--DKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFALA-----  298 (485)
Q Consensus       228 ~~~~l~s~~~--dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~-----  298 (485)
                      +|++|+++..  ++.|.++| .+++.+.. +.. ..   |+.+.|++ ..+++.+.||.+.++|. +++.+....     
T Consensus       135 DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~  208 (373)
T 2mad_H          135 NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML  208 (373)
T ss_pred             CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence            9999998874  57899999 99998888 642 22   24455654 46677788999999999 877663322     


Q ss_pred             cCCcc-EEEEEEcCCCCEEEEEeCCCCEEEEECCCCe--EEeEeccC----------CCceEEEEECCCCCEEEEEcC--
Q 011457          299 GHDNT-VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK--TMLTLTHH----------KKSVRAMALHPTEDCFASASA--  363 (485)
Q Consensus       299 ~~~~~-v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~----------~~~v~~l~~~p~~~~l~~~~~--  363 (485)
                      ....+ .....+.+++..++..+..+.+.+.|+....  .+..+...          ......+.++|++..+.+...  
T Consensus       209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~  288 (373)
T 2mad_H          209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ  288 (373)
T ss_pred             cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence            11111 1234556666555555578899999997542  22222111          122445789999887776542  


Q ss_pred             ---------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEe-CCCcEEEEeCCCCccccc
Q 011457          364 ---------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGG-DNGSLWFWDWKSGHNFQQ  421 (485)
Q Consensus       364 ---------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~-~dg~I~iwd~~~~~~~~~  421 (485)
                               +.|.++|..+++.+..+..+  .....+.+++++  .++++. .++.|.+||..+++.+..
T Consensus       289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          289 SAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                     24999999999998887433  357899999998  466665 489999999999887765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.50  E-value=2.6e-12  Score=136.39  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=163.3

Q ss_pred             cCCcceEEEEEccCCCEEEEE-----eCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC--------
Q 011457          173 GHLGWVRSVAFDHSNTWFCTG-----SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK--------  239 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tg-----s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--------  239 (485)
                      +|...+..++|||||++||-+     +.+..|++||+.+++.+.... +......++|+ |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            466678899999999998843     333589999999998654311 11112567899 999999888774        


Q ss_pred             -----cEEEEECCCCe----eEEEecc-cCCceEEEEEecCCCEEEEEEC----CCcEEEEECCCCc-eEEEeccCCccE
Q 011457          240 -----QVKCWDLEQNK----VIRSYHG-HLSGVYCLGLHPTIDILLTGGR----DSVCRVWDIRTKM-QIFALAGHDNTV  304 (485)
Q Consensus       240 -----~V~iwd~~~~~----~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~----dg~i~iwd~~~~~-~~~~~~~~~~~v  304 (485)
                           .|++|++.++.    ++..... |...+..+.|+|||++|+....    +..|+++|+.++. ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                 39999998764    3443344 5556788999999998765443    3589999998764 445555566655


Q ss_pred             EEEEEcCCCCEEEEEeC-C---CCEEEEECCCCeE--EeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCC
Q 011457          305 CSVFTRPTDPQVVTGSH-D---STIKFWDLRYGKT--MLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKG  374 (485)
Q Consensus       305 ~~l~~~~~~~~l~s~s~-d---g~I~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~  374 (485)
                      ... +++++..|+..+. +   +.|..+|+.++..  ...+..+...+.  .|++++..|+....++    |.+|++..+
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            555 5566666554443 3   5799999987654  344555555554  8889998877665432    888988744


Q ss_pred             ceeeeeccCCcccEEEEEeCCCC-eEEEEeCC----CcEEEEeCCCCcc
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEG-VLATGGDN----GSLWFWDWKSGHN  418 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~d----g~I~iwd~~~~~~  418 (485)
                       ....+.......+..+.+++++ .++....+    +.|+.||+.+++.
T Consensus       361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence             4444433445567777788777 44444433    8899999987753

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=9.7e-13  Score=127.41  Aligned_cols=266  Identities=10%  Similarity=0.084  Sum_probs=174.7

Q ss_pred             cceEEEEEccCCCEEEEEe--CCCeEEEEECCCCceEEEE-------cccccCEEEEEEcCCCCEEEEEeC-----CCcE
Q 011457          176 GWVRSVAFDHSNTWFCTGS--ADRTIKIWDVAKGTLKLTL-------TGHIEQVRGLAVSSKHTYMFSAGD-----DKQV  241 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs--~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~s~~~~~l~s~~~-----dg~V  241 (485)
                      ..+..|+++++|+++++..  .++.++||.+.+++.. .+       ..+...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            7899999999999988864  2343566665555432 22       124568999999999876555433     5789


Q ss_pred             EEEECCCCeeEEEeccc------CCceEEEEEecCCCEE-EEEE---CCCcEEEEECCCCceEEEeccCCccEE-EEEEc
Q 011457          242 KCWDLEQNKVIRSYHGH------LSGVYCLGLHPTIDIL-LTGG---RDSVCRVWDIRTKMQIFALAGHDNTVC-SVFTR  310 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l-~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~v~-~l~~~  310 (485)
                      .+||+.+++.++.+...      ...+..+++++++..+ ++..   .++.|.+||+.+++....+.+|..... ...+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999999987776432      2356889999865544 4444   578999999998887776655432111 12334


Q ss_pred             CCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECC---CCce-----eeee
Q 011457          311 PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLP---KGEF-----LHNM  380 (485)
Q Consensus       311 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~---~~~~-----~~~~  380 (485)
                      .++..+.+.+.+|.++.|.              ..+..|+|+|+++.|+.+...+  +..++..   .+..     ...+
T Consensus       176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI  241 (343)
T ss_dssp             ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred             ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence            4666677777788776653              2367899999999888776655  4444431   1110     0000


Q ss_pred             -ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcE
Q 011457          381 -LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTI  458 (485)
Q Consensus       381 -~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I  458 (485)
                       ..++......++++++| ++++...++.|.+||..+++. ..+..   .   .......+++|+++|.++++.+..+.+
T Consensus       242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~---~---~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVT---D---EKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEE---C---GGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEE---C---CceecCCeeEECCCCcEEEEeCccccc
Confidence             00122345678899999 666777788999999855642 11111   0   123458899999999988888766666


Q ss_pred             EEecC
Q 011457          459 KMWRE  463 (485)
Q Consensus       459 ~iW~~  463 (485)
                      .+|..
T Consensus       315 ~~f~~  319 (343)
T 2qe8_A          315 APLNA  319 (343)
T ss_dssp             GGGBT
T ss_pred             ccccc
Confidence            55553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=7.2e-11  Score=111.67  Aligned_cols=229  Identities=8%  Similarity=0.068  Sum_probs=155.9

Q ss_pred             EEecCCcceEEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457          170 VISGHLGWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~  248 (485)
                      .+..+...--+..|+++ +.++++...++.|..||..+++.. .+. ....+.+++++++++++++ . ++.|.+||.++
T Consensus         7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred             EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence            34455566778999995 556666667899999999887653 333 4578999999999995554 3 56899999988


Q ss_pred             CeeEEEecc----cCCceEEEEEecCCCEEEEEECC---------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCE
Q 011457          249 NKVIRSYHG----HLSGVYCLGLHPTIDILLTGGRD---------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ  315 (485)
Q Consensus       249 ~~~~~~~~~----h~~~v~~l~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~  315 (485)
                      ++.......    ....+..+++.|+|+++++...+         ..-.+|.+........+.........++|+|+++.
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence            765433221    22457899999999966654321         23345554432233333334456788999999987


Q ss_pred             EEE-EeCCCCEEEEEC--CCCeE-----EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457          316 VVT-GSHDSTIKFWDL--RYGKT-----MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT  386 (485)
Q Consensus       316 l~s-~s~dg~I~iwd~--~~~~~-----~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~  386 (485)
                      |+. .+.++.|.+||+  .++..     ...+.........+++.++|.++++...++ |.+||..+++.+..+.. ...
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-p~~  241 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-PVD  241 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-SSS
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-CCC
Confidence            754 555788999987  45543     222333345678999999998887776655 99999988988877643 345


Q ss_pred             cEEEEEeC-CCC-eEEEEe
Q 011457          387 IINSMAVN-EEG-VLATGG  403 (485)
Q Consensus       387 ~i~~~~~~-~~~-~l~sg~  403 (485)
                      .+++++|. +++ .|++++
T Consensus       242 ~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          242 KTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             BEEEEEEESGGGCEEEEEE
T ss_pred             CceEEEEeCCCCCEEEEEc
Confidence            68889997 665 444433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=6.2e-11  Score=112.14  Aligned_cols=229  Identities=11%  Similarity=0.111  Sum_probs=151.8

Q ss_pred             cccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 011457          214 TGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       214 ~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      .....-..+..|++++ .++++...++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||..+++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence            3344556788999954 5566666789999999988765 3333 4577999999999995544 4 5679999998876


Q ss_pred             eEEEecc----CCccEEEEEEcCCCCEEEEEeCC---------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          293 QIFALAG----HDNTVCSVFTRPTDPQVVTGSHD---------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       293 ~~~~~~~----~~~~v~~l~~~~~~~~l~s~s~d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      .......    ....+..+.++++|+++++...+         ..-.+|.+........+.........++|+|+++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence            4433221    12457889999999866654321         2334554433222222333334568899999998765


Q ss_pred             EEc-CC-CEEEEEC--CCCcee--eee--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCC
Q 011457          360 SAS-AE-NIKKFNL--PKGEFL--HNM--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGS  430 (485)
Q Consensus       360 ~~~-~~-~i~i~d~--~~~~~~--~~~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  430 (485)
                      .+. .. .|.+|++  .++...  ..+  ..........++++++| +.++...++.|..||..+++.+..+..      
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~------  238 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL------  238 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC------
T ss_pred             EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC------
Confidence            544 33 3999987  455432  111  12233567889999999 555555678899999998887665542      


Q ss_pred             CCCCccEEEEEEc-cCCCEEEEEEC
Q 011457          431 LDSEAGIYALSYD-VTGSRLVTCEA  454 (485)
Q Consensus       431 ~~~~~~V~~l~~s-~~g~~L~s~~~  454 (485)
                        +...+++++|. |+++.|+.++.
T Consensus       239 --p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          239 --PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             --SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             --CCCCceEEEEeCCCCCEEEEEcC
Confidence              23569999998 88887766554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.48  E-value=1.9e-11  Score=116.19  Aligned_cols=235  Identities=13%  Similarity=0.129  Sum_probs=162.3

Q ss_pred             EEEEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          168 YRVISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      +..+..+........|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            444556677788999999998 6677777899999997 454 3455556678999999999996666556688999998


Q ss_pred             CCCeeEEEec---c-cCCceEEEEEecCCCEEEE----EEC-------------CCcEEEEECCCCceEEEeccCCccEE
Q 011457          247 EQNKVIRSYH---G-HLSGVYCLGLHPTIDILLT----GGR-------------DSVCRVWDIRTKMQIFALAGHDNTVC  305 (485)
Q Consensus       247 ~~~~~~~~~~---~-h~~~v~~l~~~~~~~~l~s----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~~v~  305 (485)
                      + ++......   + ....+..+++.++|+++++    |..             .+.|..||..+++.....  ......
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~  191 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN  191 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence            6 55332221   1 1234678999999998876    332             256888887767654433  344567


Q ss_pred             EEEEcCCCCEEEEEeCC------CCEEEEECCCCeEE--eEe-ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCce
Q 011457          306 SVFTRPTDPQVVTGSHD------STIKFWDLRYGKTM--LTL-THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEF  376 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~d------g~I~iwd~~~~~~~--~~~-~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~  376 (485)
                      .++|+|+++.|+++...      +.|.+||+..+...  ..+ .........+++.++|.++++. .++|.+|+. +++.
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~-~g~~  269 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDS-DGQL  269 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECT-TSCE
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECC-CCCE
Confidence            89999999988877665      68999998765411  111 1123345678999999965554 567999997 5776


Q ss_pred             eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          377 LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       377 ~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      +..+....  .+..++|.+++ .|+.++.+ .++.++
T Consensus       270 ~~~~~~~~--~~~~~~f~~d~~~L~it~~~-~l~~~~  303 (305)
T 3dr2_A          270 LGHIPTPG--TASNCTFDQAQQRLFITGGP-CLWMLP  303 (305)
T ss_dssp             EEEEECSS--CCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred             EEEEECCC--ceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence            66654333  47788888887 67777665 444433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.46  E-value=7.5e-16  Score=150.88  Aligned_cols=258  Identities=13%  Similarity=0.098  Sum_probs=146.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCc-eE-
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG-VY-  263 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~-v~-  263 (485)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.||.|+.||.++++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999999988876  55555556667778888889999999999999887776533211 10 


Q ss_pred             EEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC
Q 011457          264 CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       264 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~  343 (485)
                      +..+. .+..+++|+.|+.|+.||.++++.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..+....
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            00111 34578888999999999999999988876543    23445678899999999999999999998776654221


Q ss_pred             CceEEEEECCC----CCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEE---eCCCcEEEEeCCCC
Q 011457          344 KSVRAMALHPT----EDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATG---GDNGSLWFWDWKSG  416 (485)
Q Consensus       344 ~~v~~l~~~p~----~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg---~~dg~I~iwd~~~~  416 (485)
                        .....+.++    +.+++...++.++.||..+|+.+.... .....+....+++++.+...   ..++.++.+|..+|
T Consensus       161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG  237 (369)
T 2hz6_A          161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSG  237 (369)
T ss_dssp             --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHH
T ss_pred             --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeecccceeeeehhcC
Confidence              122333333    444544444449999999999887753 22333444556667643210   11445667777666


Q ss_pred             c----ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          417 H----NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       417 ~----~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      +    .......         ...+.  ...-.+..|+.++.||.|+.++..
T Consensus       238 ~~~~~~~W~~~~---------~~~~~--sp~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          238 EVGRITKWKYPF---------PKETE--AKSKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             HHHHHHTSCCCC---------CCHHH--HHHHSEEEECBEECSSCEECCEEE
T ss_pred             Ccccceeeeecc---------Ccccc--ccccccceEEEecccCCEEecCcc
Confidence            5    3333221         01110  000124577778888888888775

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.45  E-value=7.2e-11  Score=115.57  Aligned_cols=266  Identities=9%  Similarity=0.069  Sum_probs=174.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEccc---------ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGH---------IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---------~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      +..+++++.++.|..+|..+++.+..+...         ...+.+.. ..++..+++++.++.|..+|.++++.+..+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            567888888999999999999988776542         12232222 22456788888999999999999998877754


Q ss_pred             cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccE-----EEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 011457          258 HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV-----CSVFTRPTDPQVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       258 h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~s~dg~I~iwd~~~  332 (485)
                      ...........  +..+++++.++.|..+|..+++.+..........     ......  +..+++++.++.|..+|..+
T Consensus       132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t  207 (376)
T 3q7m_A          132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ  207 (376)
T ss_dssp             SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred             CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence            33222222222  4578888999999999999999988776432211     222222  45788888999999999999


Q ss_pred             CeEEeEeccCCCc----eE---EEEECC---CCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEE
Q 011457          333 GKTMLTLTHHKKS----VR---AMALHP---TEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATG  402 (485)
Q Consensus       333 ~~~~~~~~~~~~~----v~---~l~~~p---~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg  402 (485)
                      ++.+.........    +.   .+...|   ++..++.+..+.+..+|..+++.+......   ....+... ++.++++
T Consensus       208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~-~~~l~~~  283 (376)
T 3q7m_A          208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG---SVNDFIVD-GNRIYLV  283 (376)
T ss_dssp             CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC---CEEEEEEE-TTEEEEE
T ss_pred             CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC---CCCCceEE-CCEEEEE
Confidence            9988776532110    00   011111   344444444556999999999988765322   23344443 4578888


Q ss_pred             eCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          403 GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       403 ~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      +.+|.|..+|..+|+........       ....+.....  .+..|+.++.+|.|.++|..++....
T Consensus       284 ~~~g~l~~~d~~tG~~~w~~~~~-------~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          284 DQNDRVMALTIDGGVTLWTQSDL-------LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             ETTCCEEEEETTTCCEEEEECTT-------TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCCCeEEEEECCCCcEEEeeccc-------CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            89999999999999875543311       0111112222  25688889999999999998877543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.45  E-value=3e-11  Score=114.80  Aligned_cols=233  Identities=12%  Similarity=0.089  Sum_probs=156.2

Q ss_pred             EEcccccCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 011457          212 TLTGHIEQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT  290 (485)
Q Consensus       212 ~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~  290 (485)
                      .+...........|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+||.. 
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3433455677899999998 5667777899999998 454 34555566778999999999966665566889999986 


Q ss_pred             CceEEEeccC----CccEEEEEEcCCCCEEEE----EeC-------------CCCEEEEECCCCeEEeEeccCCCceEEE
Q 011457          291 KMQIFALAGH----DNTVCSVFTRPTDPQVVT----GSH-------------DSTIKFWDLRYGKTMLTLTHHKKSVRAM  349 (485)
Q Consensus       291 ~~~~~~~~~~----~~~v~~l~~~~~~~~l~s----~s~-------------dg~I~iwd~~~~~~~~~~~~~~~~v~~l  349 (485)
                      ++........    ...+..+.+.++|.+.++    |..             .+.|..||..+++.....  .......+
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl  193 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL  193 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence            5432222111    134667999999988876    332             256888887666544333  34456889


Q ss_pred             EECCCCCEEEEEcCC-------CEEEEECCCCcee--eeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457          350 ALHPTEDCFASASAE-------NIKKFNLPKGEFL--HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       350 ~~~p~~~~l~~~~~~-------~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      +|+|+++.|+.+...       .|.+|++..+...  ..+..........+.++++|.|.+++.+ .|.+|+. .++.+.
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~  271 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLG  271 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEE
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEE
Confidence            999999977666543       4999998754311  1111222334567889999966666655 4999997 455544


Q ss_pred             cceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457          421 QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM  460 (485)
Q Consensus       421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i  460 (485)
                      .+..         ...+..++|+++++.|..++.++..++
T Consensus       272 ~~~~---------~~~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          272 HIPT---------PGTASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EEEC---------SSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EEEC---------CCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            4332         124778999999999988887654433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.44  E-value=2.4e-12  Score=123.33  Aligned_cols=269  Identities=12%  Similarity=0.069  Sum_probs=182.8

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      ...+.++...+++. |..++.+  |..+|. +++....+...........+.  +..|..++.++.|..+|.. ++....
T Consensus        59 ~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~  131 (330)
T 3hxj_A           59 EIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR  131 (330)
T ss_dssp             GEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred             CCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence            34567777777776 4455544  888885 565544333222222233333  4567888889999999998 777777


Q ss_pred             ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe
Q 011457          255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK  334 (485)
Q Consensus       255 ~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~  334 (485)
                      +......+.++...+++. |+.++.++.|..||.. ++....+......+.++...+++... +++  +.|..|| .+++
T Consensus       132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~  205 (330)
T 3hxj_A          132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT  205 (330)
T ss_dssp             EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC
T ss_pred             EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc
Confidence            665555566777776766 6668888999999998 87777776556667777777777644 444  8899999 7788


Q ss_pred             EEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          335 TMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       335 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      ....+......+.++...+++.+++....+++..++ .+++.+..+.. ....+..+.+.+++.|.+++.+|.|..+|. 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-  282 (330)
T 3hxj_A          206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKT-GKRIESSPVIGNTDTIYFGSYDGHLYAINP-  282 (330)
T ss_dssp             EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEEEEC-SSCCCSCCEECTTSCEEEECTTCEEEEECT-
T ss_pred             EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeC-CCCccccceEcCCCeEEEecCCCCEEEECC-
Confidence            777777666778889999998877777667788887 46666655432 233344556666778889999999999995 


Q ss_pred             CCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCC
Q 011457          415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      +++.......        ....+.++..+.+|. |..++.+|.+++...+....
T Consensus       283 ~g~~~~~~~~--------~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~~  327 (330)
T 3hxj_A          283 DGTEKWNFET--------GSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHHH  327 (330)
T ss_dssp             TSCEEEEEEC--------SSCCCSCCEECTTCC-EEEECTTSCEEEEEC-----
T ss_pred             CCcEEEEEEc--------CCccccceEEcCCCE-EEEEcCCCeEEEEecccccc
Confidence            5655443321        133456677777775 56688999999988765543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=7.4e-10  Score=106.20  Aligned_cols=220  Identities=11%  Similarity=0.013  Sum_probs=149.4

Q ss_pred             cceEEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          176 GWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       176 ~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      ....+.+|+|+ +.++++...++.|..||..+++... +. ....+.+++|+++++++++. .+ .|.+||..+++....
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence            34567899997 4566666678999999998776532 33 34679999999999877654 44 499999988875433


Q ss_pred             ecc----cCCceEEEEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE-eCCC
Q 011457          255 YHG----HLSGVYCLGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDS  323 (485)
Q Consensus       255 ~~~----h~~~v~~l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg  323 (485)
                      ...    ....+.+++++|+|+++++...      .+.|..+|  +++. ..+.........++|+++++.++.+ +.++
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence            221    1246889999999987665432      24566666  4443 3333333457789999999877555 4568


Q ss_pred             CEEEEECC--CC-e-----EEeEeccCCCceEEEEECCCCCEEEEEcC-CCEEEEECCCCceeeeeccCCcccEEEEEeC
Q 011457          324 TIKFWDLR--YG-K-----TMLTLTHHKKSVRAMALHPTEDCFASASA-ENIKKFNLPKGEFLHNMLSQQKTIINSMAVN  394 (485)
Q Consensus       324 ~I~iwd~~--~~-~-----~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  394 (485)
                      .|.+||+.  ++ .     ....+.........+++.++|.++++... ++|.+|+. +++.+..+. .....+.+++|.
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~  279 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFI  279 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEE
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEe
Confidence            89999986  55 3     12233333456788999999988777654 45999998 666665543 344568899997


Q ss_pred             -CCC-eEEEEeC
Q 011457          395 -EEG-VLATGGD  404 (485)
Q Consensus       395 -~~~-~l~sg~~  404 (485)
                       +++ .|++++.
T Consensus       280 g~d~~~L~vt~~  291 (326)
T 2ghs_A          280 GPDASRLLVTSA  291 (326)
T ss_dssp             STTSCEEEEEEB
T ss_pred             cCCCCEEEEEec
Confidence             775 5544443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.43  E-value=1.3e-11  Score=130.38  Aligned_cols=272  Identities=14%  Similarity=0.120  Sum_probs=181.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccC----------E-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ----------V-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      +..+++++.++.|..+|..+|+.+..+......          + ..+.+  .+..|++++.|+.|..+|.++|+.+..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            566777888899999999999999887643210          0 11222  3567888999999999999999999887


Q ss_pred             ccc--CCceEEEEEec---CCCEEEEEE------CCCcEEEEECCCCceEEEeccCC-----------------------
Q 011457          256 HGH--LSGVYCLGLHP---TIDILLTGG------RDSVCRVWDIRTKMQIFALAGHD-----------------------  301 (485)
Q Consensus       256 ~~h--~~~v~~l~~~~---~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~-----------------------  301 (485)
                      ...  ......+...|   ++ .+++++      .+|.|+.||.++++.+..+....                       
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            542  11111111112   33 455543      37899999999999988775210                       


Q ss_pred             --------ccEEEEEEcCCCCEEEEEeCCCC-------------------EEEEECCCCeEEeEeccC--C-------Cc
Q 011457          302 --------NTVCSVFTRPTDPQVVTGSHDST-------------------IKFWDLRYGKTMLTLTHH--K-------KS  345 (485)
Q Consensus       302 --------~~v~~l~~~~~~~~l~s~s~dg~-------------------I~iwd~~~~~~~~~~~~~--~-------~~  345 (485)
                              .....+.++++...+++++.++.                   |..||.++|+.+..+...  .       .+
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  306 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH  306 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence                    01125788888889999988764                   999999999998877542  1       11


Q ss_pred             eEEEEECCCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCc---------------------------c--------
Q 011457          346 VRAMALHPTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQK---------------------------T--------  386 (485)
Q Consensus       346 v~~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~---------------------------~--------  386 (485)
                      ........+|.   .++.++.++ ++++|..+|+.+........                           .        
T Consensus       307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~  386 (689)
T 1yiq_A          307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW  386 (689)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred             cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence            22222223554   677777766 99999999998743321110                           0        


Q ss_pred             ---cEEEEEeCCCC-eEEEEeC---------------------------------------------CCcEEEEeCCCCc
Q 011457          387 ---IINSMAVNEEG-VLATGGD---------------------------------------------NGSLWFWDWKSGH  417 (485)
Q Consensus       387 ---~i~~~~~~~~~-~l~sg~~---------------------------------------------dg~I~iwd~~~~~  417 (485)
                         .-..++++|+. ++++...                                             +|.|+.||+.+|+
T Consensus       387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~  466 (689)
T 1yiq_A          387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ  466 (689)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred             cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence               01125677765 5555422                                             3789999999998


Q ss_pred             ccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          418 NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      ........         ..+....+...+.+++.++.||.|+.||..+++..-
T Consensus       467 ~~W~~~~~---------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw  510 (689)
T 1yiq_A          467 AAWEVPYV---------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW  510 (689)
T ss_dssp             EEEEEEES---------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eEeEccCC---------CCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence            77665431         112222455578899999999999999999987553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.42  E-value=9.3e-12  Score=120.70  Aligned_cols=260  Identities=10%  Similarity=-0.035  Sum_probs=175.3

Q ss_pred             eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEeccc-------CC
Q 011457          198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQNKVIRSYHGH-------LS  260 (485)
Q Consensus       198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~~~~~~~~~h-------~~  260 (485)
                      .|.++|..+++.+.++.....+  .+.++|++++++++.          .++.|.+||+.+++.+.++...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8899999999999998766566  799999999999886          3689999999999999998633       12


Q ss_pred             ceEEEEEecCCCEEEEEEC--CCcEEE--EECCCCceEEEeccCCccEEEEEEcCCC-CEEEEEeCCCCEEEEECCC---
Q 011457          261 GVYCLGLHPTIDILLTGGR--DSVCRV--WDIRTKMQIFALAGHDNTVCSVFTRPTD-PQVVTGSHDSTIKFWDLRY---  332 (485)
Q Consensus       261 ~v~~l~~~~~~~~l~sg~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~s~dg~I~iwd~~~---  332 (485)
                      ....++++|||++++++..  +..|.+  +|+.+   +..+.. ...   ..+.|++ ..+++.+.||.+.+.|+.+   
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            4568999999999998875  467888  99877   344431 111   1122333 3456677889998899886   


Q ss_pred             --CeEEeE----eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCc--eeeeeccC------Cc---ccEEEEEeCC
Q 011457          333 --GKTMLT----LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGE--FLHNMLSQ------QK---TIINSMAVNE  395 (485)
Q Consensus       333 --~~~~~~----~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~--~~~~~~~~------~~---~~i~~~~~~~  395 (485)
                        ++....    +.....+.   . .+++..++..+.+.+.+.|.....  .+..+...      ..   .....+.+++
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~  273 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK  273 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred             cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence              433211    11122333   3 444444433333669999986542  22222111      00   1112267899


Q ss_pred             CC-eEEEEeC---------CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEE-CCCcEEEecC
Q 011457          396 EG-VLATGGD---------NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCE-ADKTIKMWRE  463 (485)
Q Consensus       396 ~~-~l~sg~~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~-~Dg~I~iW~~  463 (485)
                      ++ .++++..         ++.+.++|+.+++.+..+..         ......++|++||+ .+++.. .++.|.++|.
T Consensus       274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---------EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---------CCCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence            88 5554432         23566999999988777654         22478899999998 456666 5999999999


Q ss_pred             CCCCCCCCCCCCCCCC
Q 011457          464 DETATPETHPLNFKPP  479 (485)
Q Consensus       464 ~~~~~~~~~~~~~~p~  479 (485)
                      .+.+...+.+..-.|.
T Consensus       345 ~t~kvv~~I~vg~~P~  360 (368)
T 1mda_H          345 ASDQDQSSVELDKGPE  360 (368)
T ss_dssp             SSCEEEEECCCCSCCC
T ss_pred             CCCcEEEEEECCCCCC
Confidence            9988777776655543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.42  E-value=2.1e-10  Score=112.18  Aligned_cols=257  Identities=14%  Similarity=0.161  Sum_probs=170.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCce---
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGV---  262 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v---  262 (485)
                      ++..++.++.++.|..+|..+++.+................  +..+++++.++.|..+|..+++.+..+.......   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            45678888899999999999999887766443221112222  4468888899999999999999888775432211   


Q ss_pred             --EEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc----------E-EEEEEcCCCCEEEEEeCCCCEEEEE
Q 011457          263 --YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT----------V-CSVFTRPTDPQVVTGSHDSTIKFWD  329 (485)
Q Consensus       263 --~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~l~~~~~~~~l~s~s~dg~I~iwd  329 (485)
                        ......  +..++.++.++.|..+|..+++.+.........          + .....  .+..+++++.++.+..+|
T Consensus       180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEE
T ss_pred             CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEE
Confidence              112222  457888889999999999999988776532110          0 11111  256788888999999999


Q ss_pred             CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457          330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW  409 (485)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~  409 (485)
                      .++++.+.....  .....+... ++.+++....+.+..+|..+++.+..........+...... ++.|++++.+|.|+
T Consensus       256 ~~tG~~~w~~~~--~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~  331 (376)
T 3q7m_A          256 LRSGQIMWKREL--GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLH  331 (376)
T ss_dssp             TTTCCEEEEECC--CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEE
T ss_pred             CCCCcEEeeccC--CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEE
Confidence            999998877653  234444443 34444444455699999999998876542222222222222 45888999999999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEE-EEEEccCCCEEEEEECCCcEEEec
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIY-ALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      ++|..+|+........        ...+. ....  .+..|+.++.||.|..|+
T Consensus       332 ~~d~~tG~~~~~~~~~--------~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          332 WINVEDGRFVAQQKVD--------SSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEETTTCCEEEEEECC--------TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEECCCCcEEEEEecC--------CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            9999999876554321        01111 1112  255888899999999986

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=1.2e-09  Score=104.63  Aligned_cols=221  Identities=12%  Similarity=0.049  Sum_probs=146.0

Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457          219 QVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       219 ~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  297 (485)
                      ......|+|++ .++++...++.|..||..+++.. .+. ....+.+++|.++++++++. .+ .|.+||..+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            34567899974 45566667899999999887643 333 34679999999998876654 44 4999999887754332


Q ss_pred             cc----CCccEEEEEEcCCCCEEEEEeC------CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC-C-C
Q 011457          298 AG----HDNTVCSVFTRPTDPQVVTGSH------DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA-E-N  365 (485)
Q Consensus       298 ~~----~~~~v~~l~~~~~~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~-~  365 (485)
                      ..    ....+..+.++++|+++++...      .+.|..+|  +++.. .+.........++|+|+++.++.+.. + .
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            21    1246889999999987665442      24566666  45433 23223345678999999987655543 3 4


Q ss_pred             EEEEECC--CC-cee--eee--ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccE
Q 011457          366 IKKFNLP--KG-EFL--HNM--LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGI  437 (485)
Q Consensus       366 i~i~d~~--~~-~~~--~~~--~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V  437 (485)
                      |.+|++.  ++ ...  ..+  ..........+.++++| ++++...++.|.+||. +++.+..+..        +...+
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~--------~~~~~  273 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV--------PGKQT  273 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC--------SCSBE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC--------CCCCc
Confidence            9999986  55 321  111  12234567889999999 4444445688999998 5555443321        23469


Q ss_pred             EEEEEc-cCCCEEEEEECC
Q 011457          438 YALSYD-VTGSRLVTCEAD  455 (485)
Q Consensus       438 ~~l~~s-~~g~~L~s~~~D  455 (485)
                      ++++|+ ++++.|+.++..
T Consensus       274 ~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          274 TCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEEESTTSCEEEEEEBC
T ss_pred             EEEEEecCCCCEEEEEecC
Confidence            999998 888877665543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.1e-11  Score=120.46  Aligned_cols=170  Identities=13%  Similarity=0.125  Sum_probs=131.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457          219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-----------VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd  287 (485)
                      .++.+++++...++++|+.++ +.+|++.+.+           ..... .+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999875 6669875433           11222 3556 999999  88999998 889999999


Q ss_pred             CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEE
Q 011457          288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIK  367 (485)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~  367 (485)
                      +++.........|...+.++.+.+.  .+++++.||.|.+||+..+....    +...|++++|+|+| ..+...++.++
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~~dg~i~  185 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLLKDRSFQ  185 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEETTSCEE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEEcCCcEE
Confidence            9988777777778888888877654  38889999999999999877653    34689999999999 44444455599


Q ss_pred             EEECCCCce--eeeec-----c---CCcccEEEEEeCCCC-eEEE
Q 011457          368 KFNLPKGEF--LHNML-----S---QQKTIINSMAVNEEG-VLAT  401 (485)
Q Consensus       368 i~d~~~~~~--~~~~~-----~---~~~~~i~~~~~~~~~-~l~s  401 (485)
                      +|+...++.  ...+.     .   .+...+.++.|.+++ ++++
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            998877664  33431     1   356889999999998 5544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.39  E-value=5.2e-11  Score=125.61  Aligned_cols=272  Identities=12%  Similarity=0.097  Sum_probs=183.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEccc-c----cCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEE
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGH-I----EQVRGLAVSSKHTYMFSAGD------DKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~----~~V~~l~~s~~~~~l~s~~~------dg~V~iwd~~~~~~~~~  254 (485)
                      ++..+++++.|+.|..+|..+|+.+..+..+ .    ..+.+--.. .+..+++++.      ++.|+.||..+|+.+..
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            3567888889999999999999999888754 1    112110011 1344555543      79999999999999987


Q ss_pred             ecccCCc--------------------------------eEEEEEecCCCEEEEEECCC-------------------cE
Q 011457          255 YHGHLSG--------------------------------VYCLGLHPTIDILLTGGRDS-------------------VC  283 (485)
Q Consensus       255 ~~~h~~~--------------------------------v~~l~~~~~~~~l~sg~~dg-------------------~i  283 (485)
                      +......                                ...++++++++.++.+..++                   .|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            7532111                                13578899989998887764                   59


Q ss_pred             EEEECCCCceEEEecc--CC-------ccEEEEEEcCCC---CEEEEEeCCCCEEEEECCCCeEEeEeccCC--------
Q 011457          284 RVWDIRTKMQIFALAG--HD-------NTVCSVFTRPTD---PQVVTGSHDSTIKFWDLRYGKTMLTLTHHK--------  343 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--------  343 (485)
                      ..+|.++++.+..+..  |.       .....+....+|   ..++.++.+|.|+++|..+|+.+..+....        
T Consensus       286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d  365 (677)
T 1kb0_A          286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD  365 (677)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred             EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence            9999999999988763  21       112222333366   678999999999999999999887654221        


Q ss_pred             ---Cce------------------------EEEEECCCCCEEEEEcC---------------------------------
Q 011457          344 ---KSV------------------------RAMALHPTEDCFASASA---------------------------------  363 (485)
Q Consensus       344 ---~~v------------------------~~l~~~p~~~~l~~~~~---------------------------------  363 (485)
                         .++                        ..++++|++.++++...                                 
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  445 (677)
T 1kb0_A          366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF  445 (677)
T ss_dssp             TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred             CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence               111                        15678888877766432                                 


Q ss_pred             -----------CCEEEEECCCCceeeeeccCCcccEEEEEeC-CCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCC
Q 011457          364 -----------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVN-EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL  431 (485)
Q Consensus       364 -----------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  431 (485)
                                 +.|..||+.+++.+..+....  .+....+. .++++++++.||.+++||..+|+.+..+...      
T Consensus       446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~------  517 (677)
T 1kb0_A          446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG------  517 (677)
T ss_dssp             ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS------
T ss_pred             cccccCCCCCccEEEEEeCCCCcEEeecCCCC--CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC------
Confidence                       238999999999888764322  12222233 3458888999999999999999988776532      


Q ss_pred             CCCccEEEEEEccCCCEEEEE-EC----------------CCcEEEecCCCCC
Q 011457          432 DSEAGIYALSYDVTGSRLVTC-EA----------------DKTIKMWREDETA  467 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~-~~----------------Dg~I~iW~~~~~~  467 (485)
                       +.....-+.|..+|+.+++. +.                .+.+.+|.+....
T Consensus       518 -~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~a  569 (677)
T 1kb0_A          518 -TGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKA  569 (677)
T ss_dssp             -SCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBC
T ss_pred             -CCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccccc
Confidence             11112235567788755543 22                3688899887433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.39  E-value=3.6e-11  Score=126.83  Aligned_cols=272  Identities=12%  Similarity=0.093  Sum_probs=186.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEccccc-----------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE-----------QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      +..+++++.++.|..+|..+|+.+..+.....           ....+++  .+..|++++.|+.|..+|..+|+.+..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            55677777789999999999999988764321           0112233  4567888899999999999999999888


Q ss_pred             ccc-C----CceEE-EEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCCcc--------------------
Q 011457          256 HGH-L----SGVYC-LGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDNT--------------------  303 (485)
Q Consensus       256 ~~h-~----~~v~~-l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~--------------------  303 (485)
                      ..+ .    ..+.+ ..+  .+..+++++.      +|.|+.||..+++.+..+......                    
T Consensus       155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            654 1    11211 111  1345555553      799999999999999887532211                    


Q ss_pred             ------------EEEEEEcCCCCEEEEEeCCC-------------------CEEEEECCCCeEEeEeccCC---------
Q 011457          304 ------------VCSVFTRPTDPQVVTGSHDS-------------------TIKFWDLRYGKTMLTLTHHK---------  343 (485)
Q Consensus       304 ------------v~~l~~~~~~~~l~s~s~dg-------------------~I~iwd~~~~~~~~~~~~~~---------  343 (485)
                                  ...+.+++++..+++++.++                   .|..+|.++|+.+..+....         
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                        13567888888999887764                   49999999999988765321         


Q ss_pred             CceEEEEECCCC---CEEEEEcCCC-EEEEECCCCceeeeeccCCcc----------cE---------------------
Q 011457          344 KSVRAMALHPTE---DCFASASAEN-IKKFNLPKGEFLHNMLSQQKT----------II---------------------  388 (485)
Q Consensus       344 ~~v~~l~~~p~~---~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~----------~i---------------------  388 (485)
                      .....+....+|   ..++.++.++ ++++|..+|+.+..+......          .+                     
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            122223333466   5777777777 999999999988765322111          01                     


Q ss_pred             ---EEEEeCCCC-eEEEEeC-------------------------------------------CCcEEEEeCCCCccccc
Q 011457          389 ---NSMAVNEEG-VLATGGD-------------------------------------------NGSLWFWDWKSGHNFQQ  421 (485)
Q Consensus       389 ---~~~~~~~~~-~l~sg~~-------------------------------------------dg~I~iwd~~~~~~~~~  421 (485)
                         ..++++|++ ++++...                                           .|.|..||+.+++....
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~  472 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS  472 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence               146777776 6655432                                           27899999999987766


Q ss_pred             ceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457          422 AQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET  471 (485)
Q Consensus       422 ~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~  471 (485)
                      ....         ..+....+...+.+++.++.||.+++||..+++....
T Consensus       473 ~~~~---------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          473 VEHV---------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             EEES---------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cCCC---------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence            5431         1223344566788999999999999999998875443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.38  E-value=7.9e-11  Score=116.06  Aligned_cols=251  Identities=13%  Similarity=0.067  Sum_probs=177.3

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccc-------ccCEEEEEEc
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGH-------IEQVRGLAVS  226 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~s  226 (485)
                      ..+.+..+..-..+  .++++||+++|+++.          .++.|.++|..+++.+.++.-.       ......+.|+
T Consensus       108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s  185 (426)
T 3c75_H          108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT  185 (426)
T ss_dssp             TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred             CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence            35666666644455  899999999888876          3678999999999998877521       1234578999


Q ss_pred             CCCCEEEEEeC--CCcEEEEECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCCCceEEEe----cc
Q 011457          227 SKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRTKMQIFAL----AG  299 (485)
Q Consensus       227 ~~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~----~~  299 (485)
                      |++++|+++..  ++.|.+.|+.+++.+..+....  .  ....|++ ..+++.+.||.+.+.++.+++.....    ..
T Consensus       186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v  261 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT  261 (426)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred             CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence            99999999874  5789999999999998886321  1  2334443 56677788888888888666554321    11


Q ss_pred             CCcc-EEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE--eEecc----------CCCceEEEEECCCCCEEEEEcC---
Q 011457          300 HDNT-VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM--LTLTH----------HKKSVRAMALHPTEDCFASASA---  363 (485)
Q Consensus       300 ~~~~-v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~--~~~~~----------~~~~v~~l~~~p~~~~l~~~~~---  363 (485)
                      ...+ ...+.+.+++..++..+..+.|.+.|+......  ..+..          .......++++|++..+++...   
T Consensus       262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~  341 (426)
T 3c75_H          262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD  341 (426)
T ss_dssp             TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred             CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence            1111 123467888888887788899999998754421  11110          0111223789999886666532   


Q ss_pred             --------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEe-CCCcEEEEeCCCCcccccc
Q 011457          364 --------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGG-DNGSLWFWDWKSGHNFQQA  422 (485)
Q Consensus       364 --------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~-~dg~I~iwd~~~~~~~~~~  422 (485)
                              +.|.++|..+.+.+..+..+  .....+.+++++  ++++.. .++.|.++|..+++.+..+
T Consensus       342 ~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          342 EWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                    24999999999999887433  257889999998  566666 5899999999999877664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.37  E-value=5.1e-11  Score=126.43  Aligned_cols=238  Identities=8%  Similarity=0.096  Sum_probs=156.2

Q ss_pred             cccCEEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc--------
Q 011457          216 HIEQVRGLAVSSKHTYMFSA-----GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV--------  282 (485)
Q Consensus       216 h~~~V~~l~~s~~~~~l~s~-----~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~--------  282 (485)
                      |...+..++|||||++|+.+     +.+..|++||+++++.+.... +......++|+ |++.|+.++.+..        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            44578889999999988843     233579999999998655321 11113578899 9999998888743        


Q ss_pred             -----EEEEECCCCce----EEEecc-CCccEEEEEEcCCCCEEEEEeC----CCCEEEEECCCCe-EEeEeccCCCceE
Q 011457          283 -----CRVWDIRTKMQ----IFALAG-HDNTVCSVFTRPTDPQVVTGSH----DSTIKFWDLRYGK-TMLTLTHHKKSVR  347 (485)
Q Consensus       283 -----i~iwd~~~~~~----~~~~~~-~~~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~~~~-~~~~~~~~~~~v~  347 (485)
                           |++|++.+...    +..... |...+.++.++|++++|+....    ++.|+++|+.++. ....+..+.....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                 99999987643    333333 4456788999999998865443    2479999998763 3445555555555


Q ss_pred             EEEECCCCCEEE-EEcCC----CEEEEECCCCce--eeeeccCCcccEEEEEeCCCC-eEE-EEeCCC--cEEEEeCCCC
Q 011457          348 AMALHPTEDCFA-SASAE----NIKKFNLPKGEF--LHNMLSQQKTIINSMAVNEEG-VLA-TGGDNG--SLWFWDWKSG  416 (485)
Q Consensus       348 ~l~~~p~~~~l~-~~~~~----~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~-sg~~dg--~I~iwd~~~~  416 (485)
                      .. +++++..|+ ....+    .|..+++.++..  ...+..+....+   .+++++ .|+ +...+|  .|++||+..+
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            54 556666554 44333    288999987654  234444444444   566666 444 444555  6889998754


Q ss_pred             cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC----CcEEEecCCCCC
Q 011457          417 HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD----KTIKMWREDETA  467 (485)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D----g~I~iW~~~~~~  467 (485)
                      . ...+.       +.....+..+.+++++..|+....+    ++|..|++.++.
T Consensus       361 ~-~~~l~-------~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          361 R-VREVA-------LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             E-EEEEC-------CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             e-eEEee-------cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            3 22211       1234557788888888877766555    889999987654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.36  E-value=9.9e-11  Score=123.70  Aligned_cols=256  Identities=11%  Similarity=0.114  Sum_probs=169.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEccc--ccCEEEEEEcC---CCCEEEEEe------CCCcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSS---KHTYMFSAG------DDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~---~~~~l~s~~------~dg~V~iwd~~~~~~~~~~  255 (485)
                      +..+++++.|+.|..+|..+|+.+..+...  ......+..+|   ++. +++++      .+|.|..||..+|+.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            567888889999999999999998877642  11111111122   444 44443      3789999999999998877


Q ss_pred             cccC-------------------------------CceEEEEEecCCCEEEEEECCCc-------------------EEE
Q 011457          256 HGHL-------------------------------SGVYCLGLHPTIDILLTGGRDSV-------------------CRV  285 (485)
Q Consensus       256 ~~h~-------------------------------~~v~~l~~~~~~~~l~sg~~dg~-------------------i~i  285 (485)
                      ....                               .....+++.|+.++++.+..++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            5210                               01125788898889999988764                   999


Q ss_pred             EECCCCceEEEecc--CC-------ccEEEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCCC---------
Q 011457          286 WDIRTKMQIFALAG--HD-------NTVCSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHKK---------  344 (485)
Q Consensus       286 wd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~---------  344 (485)
                      ||.++++.+..+..  |.       ..........++.   .++.++.+|.++++|.++|+.+........         
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999999988764  21       1122222222454   788999999999999999998743321110         


Q ss_pred             ------------------------------ceEEEEECCCCCEEEEEcC-------------------------------
Q 011457          345 ------------------------------SVRAMALHPTEDCFASASA-------------------------------  363 (485)
Q Consensus       345 ------------------------------~v~~l~~~p~~~~l~~~~~-------------------------------  363 (485)
                                                    .-..++++|+..++++...                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                                          0113678888777765421                               


Q ss_pred             ---------------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeecc
Q 011457          364 ---------------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQP  428 (485)
Q Consensus       364 ---------------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~  428 (485)
                                     +.+..||+.+++.+..+..+.. ..........+++++|+.||.|+.||.++|+.+..+...   
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~---  515 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA---  515 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---
T ss_pred             CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC---
Confidence                           2388999999998887643322 111222334558999999999999999999988776531   


Q ss_pred             CCCCCCccEEEEEEccCCCEEEE
Q 011457          429 GSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       429 ~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                          +.....-+.|..+|+..++
T Consensus       516 ----~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          516 ----SGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             ----SCCCSCCEEEEETTEEEEE
T ss_pred             ----CCcccCceEEEECCEEEEE
Confidence                1111223566788875544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.34  E-value=8.9e-12  Score=119.37  Aligned_cols=259  Identities=12%  Similarity=0.125  Sum_probs=177.9

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccC
Q 011457          180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL  259 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~  259 (485)
                      +..+..++. +..++.++.|..|| .+++....+......+.++...+++. |+.++.+  |..+|. +++.+..+....
T Consensus        24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~   97 (330)
T 3hxj_A           24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK   97 (330)
T ss_dssp             CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred             CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCC
Confidence            344544554 66777888899999 88887766655555667777777765 5555444  888886 566554443232


Q ss_pred             CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe
Q 011457          260 SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL  339 (485)
Q Consensus       260 ~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~  339 (485)
                      .......+.  +..|..++.++.|..+|.. ++...........+.++...+++. +++++.++.|..||.. ++....+
T Consensus        98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~  172 (330)
T 3hxj_A           98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF  172 (330)
T ss_dssp             ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE
T ss_pred             CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE
Confidence            222333333  4578888889999999998 777777765555666777776665 6667888999999998 8877777


Q ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457          340 THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      ......+.++...+++.++++.  +++..+| .+++...... .....+.++...+++.|.+++.++.|..+|. +++.+
T Consensus       173 ~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~  247 (330)
T 3hxj_A          173 KTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEK  247 (330)
T ss_dssp             ECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEE
T ss_pred             ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEe
Confidence            6666677788888888866665  7899999 7877776653 3345677888888888888888899999974 55544


Q ss_pred             ccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       420 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .....        ....+..+.++.+| .|..++.+|.|..++.
T Consensus       248 ~~~~~--------~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          248 WRFKT--------GKRIESSPVIGNTD-TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             EEEEC--------SSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred             EEeeC--------CCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence            33321        11112234556566 5666778888998885

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.26  E-value=1.6e-12  Score=127.17  Aligned_cols=186  Identities=15%  Similarity=0.094  Sum_probs=111.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCcc-EE-
Q 011457          228 KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNT-VC-  305 (485)
Q Consensus       228 ~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-v~-  305 (485)
                      ++..+++++.||.|..||..+|+.+..+..  ..+.+..+..++..+++++.||.|+.||..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999999988875  55555556667778888889999999999999887776543211 10 


Q ss_pred             EEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC
Q 011457          306 SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ  384 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~  384 (485)
                      +..+. .+..+++++.|+.|+.||.++|+.+..+..+.    ...++|++..+++++.++ ++.||..+|+.+..+....
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            11111 34578888899999999999999988776543    234566777777776655 9999999998776643211


Q ss_pred             cccEEEEEeCCC----CeEEEEeCCCcEEEEeCCCCcccccce
Q 011457          385 KTIINSMAVNEE----GVLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       385 ~~~i~~~~~~~~----~~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                         .....+..+    +.+++++.+|.|+.||..+|+......
T Consensus       161 ---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          161 ---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             ---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             ---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence               122333332    578889999999999999998765543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.25  E-value=1.4e-10  Score=112.36  Aligned_cols=245  Identities=10%  Similarity=-0.013  Sum_probs=166.7

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccc-------ccCEEEEEEc
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGH-------IEQVRGLAVS  226 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~s  226 (485)
                      .++.+..+..-..+  .++++||+++++++.          .++.|.+||+.+++.+.++...       ......++|+
T Consensus        55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S  132 (368)
T 1mda_H           55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence            35666676644455  799999999988886          3689999999999999988643       1235678999


Q ss_pred             CCCCEEEEEeC--CCcEEE--EECCCCeeEEEecccCCceEEEEEecCC-CEEEEEECCCcEEEEECCC-----CceEEE
Q 011457          227 SKHTYMFSAGD--DKQVKC--WDLEQNKVIRSYHGHLSGVYCLGLHPTI-DILLTGGRDSVCRVWDIRT-----KMQIFA  296 (485)
Q Consensus       227 ~~~~~l~s~~~--dg~V~i--wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i~iwd~~~-----~~~~~~  296 (485)
                      |||++++++..  +..|.+  +|+.+   +..+.. ...   +.+.|++ ..+++.+.||.+.+.|+.+     ++....
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~  205 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence            99999999875  467888  99877   444431 111   2234444 3556667889988899876     332211


Q ss_pred             ----eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCe--EEeEeccC----------CCceEEEEECCCCCEEEE
Q 011457          297 ----LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK--TMLTLTHH----------KKSVRAMALHPTEDCFAS  360 (485)
Q Consensus       297 ----~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~----------~~~v~~l~~~p~~~~l~~  360 (485)
                          +.-...+.   . .+++..++..+. +.+.+.|+....  .+..+...          ......+.++|++..++.
T Consensus       206 ~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          206 CTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             SCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             eeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                11112233   3 566666666666 999999986532  22222211          011222789999887775


Q ss_pred             EcC----------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEe-CCCcEEEEeCCCCccccccee
Q 011457          361 ASA----------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGG-DNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       361 ~~~----------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~-~dg~I~iwd~~~~~~~~~~~~  424 (485)
                      +..          +++.++|..+++.+..+..+.  ....+.+++++  .+++.. .++.|.++|+.+++.+..+..
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            432          357799999999888774433  58899999998  455666 589999999999988776653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.23  E-value=4.3e-10  Score=108.65  Aligned_cols=223  Identities=12%  Similarity=0.044  Sum_probs=148.8

Q ss_pred             cCCcceEEEEEccCCCEEEEEeC-----CCeEEEEECCCCceEEEEccc------ccCEEEEEEcCCCCEE-EEEe---C
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSA-----DRTIKIWDVAKGTLKLTLTGH------IEQVRGLAVSSKHTYM-FSAG---D  237 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~-----dg~I~iwd~~~~~~~~~~~~h------~~~V~~l~~s~~~~~l-~s~~---~  237 (485)
                      +|...+.+++++++++++++-..     ++.|.+||+.+++.+..+...      ...+..+++++++..+ ++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            56788999999999886665543     578999999999877766532      2356899999865454 4444   5


Q ss_pred             CCcEEEEECCCCeeEEEecccCCceE-EEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEE
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGVY-CLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  316 (485)
                      ++.|.+||+.+++..+.+.+|..... ...+.+++..+.+.+.++.+..|.              ..+..++++|+++.|
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l  209 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL  209 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence            78999999999988777765432111 134555777777777888876653              236789999999999


Q ss_pred             EEEeCCC-CEEEEECC---CCe-----EEe--EeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCC
Q 011457          317 VTGSHDS-TIKFWDLR---YGK-----TML--TLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ  384 (485)
Q Consensus       317 ~s~s~dg-~I~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~  384 (485)
                      +++..++ .|..++..   .+.     ...  ...++......++++++|.++++...++ |.+|+..+++.........
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~  289 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK  289 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence            8887776 44444432   110     000  1112233456799999999888887766 9999985665432222222


Q ss_pred             cccEEEEEeCCCC-eEEEEeCCCcEE
Q 011457          385 KTIINSMAVNEEG-VLATGGDNGSLW  409 (485)
Q Consensus       385 ~~~i~~~~~~~~~-~l~sg~~dg~I~  409 (485)
                      ......+++.+++ ++++.+..+.+.
T Consensus       290 ~~~p~~va~~~~g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          290 LSWTDSFNFGSDGYLYFDCNQLHHSA  315 (343)
T ss_dssp             GSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred             eecCCeeEECCCCcEEEEeCcccccc
Confidence            4557889998888 444544444443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=5e-08  Score=90.38  Aligned_cols=249  Identities=9%  Similarity=0.038  Sum_probs=153.0

Q ss_pred             CEEEEEeCCCeEEEEECCCCceE-----EEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCc
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLK-----LTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSG  261 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~-----~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~  261 (485)
                      .+|+.+.. +.|+.+++......     ..+......+..++|++++..|+.+ ..++.|..+++..+.....+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34555543 47888888655321     1222223457899999976655554 45789999999866544433333356


Q ss_pred             eEEEEEecCCCEEEEE-ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC---CCCEEEEECCCCeEEe
Q 011457          262 VYCLGLHPTIDILLTG-GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH---DSTIKFWDLRYGKTML  337 (485)
Q Consensus       262 v~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~---dg~I~iwd~~~~~~~~  337 (485)
                      ...+++++++..|+.+ ...+.|.++++..................++++|++..|+.+..   .+.|..+++.... ..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            7899999976555544 45678999998754332222222246789999997666665554   3688888876432 22


Q ss_pred             Ee-ccCCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          338 TL-THHKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       338 ~~-~~~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      .+ .........+++++++..|..+... + |.+++...... ..+... ......++...+.++++...++.|..+|..
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence            22 2233467899999987766555544 3 99999875433 222222 223456666533255555567899999999


Q ss_pred             CCcccccceeeeccCCCCCCccEEEEEEccCCC
Q 011457          415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS  447 (485)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  447 (485)
                      +++....+..-       .......+++.|++.
T Consensus       238 ~g~~~~~i~~g-------~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          238 ISKEMDTFHPH-------KQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEECCS-------SCCCCCCEEEECSCC
T ss_pred             CCCceEEEccc-------cccccceeeecCccC
Confidence            88776555321       111245566777653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.20  E-value=1.6e-08  Score=98.64  Aligned_cols=226  Identities=13%  Similarity=0.137  Sum_probs=149.6

Q ss_pred             CCCCEEEEE-eCCCcEEEEECCCC----eeEEEec-------ccCCceEEEEEecCCCEEEEEECC------CcEEEEEC
Q 011457          227 SKHTYMFSA-GDDKQVKCWDLEQN----KVIRSYH-------GHLSGVYCLGLHPTIDILLTGGRD------SVCRVWDI  288 (485)
Q Consensus       227 ~~~~~l~s~-~~dg~V~iwd~~~~----~~~~~~~-------~h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~  288 (485)
                      .++++|++. ..++.|.++|+.+.    +.++.+.       ........+.+.|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            677777654 56789999999766    6777763       112245667888999 77766655      78999999


Q ss_pred             CCCceEEEeccCC---ccEEEEEEcCCCCEEEEEe-------------------CCCCEEEEECCCCeEEeEeccC--CC
Q 011457          289 RTKMQIFALAGHD---NTVCSVFTRPTDPQVVTGS-------------------HDSTIKFWDLRYGKTMLTLTHH--KK  344 (485)
Q Consensus       289 ~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~s-------------------~dg~I~iwd~~~~~~~~~~~~~--~~  344 (485)
                      .+++.+..+....   ..-..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++...  ..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999998886221   2234588899999888874                   3689999999998888877653  13


Q ss_pred             ceEEEEE--CCCCCEEEEEcC-----CC--EEEEECCCCceeeeec---cC----------------CcccEEEEEeCCC
Q 011457          345 SVRAMAL--HPTEDCFASASA-----EN--IKKFNLPKGEFLHNML---SQ----------------QKTIINSMAVNEE  396 (485)
Q Consensus       345 ~v~~l~~--~p~~~~l~~~~~-----~~--i~i~d~~~~~~~~~~~---~~----------------~~~~i~~~~~~~~  396 (485)
                      ..+.+.|  +|+++++.+++.     ..  |.+|....++......   ..                .......+.+++|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            4455655  999998877765     43  6655544442211100   00                0234678899999


Q ss_pred             C-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCC---C------CCccEEEEEEccCCCEEEEEE
Q 011457          397 G-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSL---D------SEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       397 ~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~---~------~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      + +|.++. ..+.|.+||+...........+...+..   .      -...-..+.+++||++|+++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9 554444 4689999998644333333222221110   0      011346789999999999988

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.17  E-value=2.5e-07  Score=99.70  Aligned_cols=277  Identities=10%  Similarity=0.114  Sum_probs=188.0

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT------GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~  248 (485)
                      ...|.++..+++|. |..|+.++-|..|+..+........      -....|.++...++|. |..|+.++-|..||..+
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence            36799999998887 5567777779999876554322111      0245699999988876 56677777799999887


Q ss_pred             CeeEEEecc--------cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec----cCCccEEEEEEcCCCCEE
Q 011457          249 NKVIRSYHG--------HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA----GHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       249 ~~~~~~~~~--------h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~~l  316 (485)
                      ++.......        ....|.++...++++.|..|+.++-|..||..+++......    .....|.++...+++.+.
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lw  466 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLW  466 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEE
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEE
Confidence            665433211        23579999998888867788887889999998876443321    134578999988877654


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEecc------CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec------cCC
Q 011457          317 VTGSHDSTIKFWDLRYGKTMLTLTH------HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML------SQQ  384 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~~~~~~~~------~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~------~~~  384 (485)
                      + |+. +-|.+||..+++.......      ....|.++...++|.+.++.. +++..|+..+++.  .+.      ...
T Consensus       467 i-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~  541 (795)
T 4a2l_A          467 L-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVT  541 (795)
T ss_dssp             E-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGG
T ss_pred             E-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCC
Confidence            4 455 4589999887654332211      235689999999998887776 7899999877765  221      122


Q ss_pred             cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          385 KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       385 ~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      ...|.++...++|.|..|+.. -|..||..+++. ..+..  ..+ + ....|.++..+++|.+.+++ . +-|..|+..
T Consensus       542 ~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~-~~~~~--~~g-l-~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~  613 (795)
T 4a2l_A          542 KLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI-KRYNT--TNG-L-PNNVVYGILEDSFGRLWLST-N-RGISCFNPE  613 (795)
T ss_dssp             GSCEEEEEECTTSCEEEEESS-CEEEEETTTTEE-EEECG--GGT-C-SCSCEEEEEECTTSCEEEEE-T-TEEEEEETT
T ss_pred             CCeeEEEEECCCCCEEEEeCC-CceeECCCCCcE-EEeCC--CCC-C-chhheEEEEECCCCCEEEEc-C-CceEEEcCC
Confidence            356899999999977777766 688899776532 21111  111 1 23458999999999776655 3 446667765


Q ss_pred             CC
Q 011457          465 ET  466 (485)
Q Consensus       465 ~~  466 (485)
                      +.
T Consensus       614 ~~  615 (795)
T 4a2l_A          614 TE  615 (795)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.15  E-value=3.8e-07  Score=98.26  Aligned_cols=281  Identities=14%  Similarity=0.137  Sum_probs=190.0

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-------cccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-------HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-------h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      ...|.++...++|.+ ..|+.+ -|.+||..+++.......       ....|.++...++|. |..|+.++-|..|+..
T Consensus       262 ~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            356999999888874 445555 588999877765433211       236799999998887 5667777779999876


Q ss_pred             CCeeEEEec------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--------CCccEEEEEEcCCC
Q 011457          248 QNKVIRSYH------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--------HDNTVCSVFTRPTD  313 (485)
Q Consensus       248 ~~~~~~~~~------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~~~~~  313 (485)
                      ++.......      .....|.++...++|+ |..|+.++-|..||..++........        ....|.++...+++
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            554322111      1235699999888876 56688887899999887654432211        23578999988888


Q ss_pred             CEEEEEeCCCCEEEEECCCCeEEeEec----cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc-----CC
Q 011457          314 PQVVTGSHDSTIKFWDLRYGKTMLTLT----HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS-----QQ  384 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~-----~~  384 (485)
                      ..|.+|+.++-|.+||..+++......    .....|.++...+++.+.++.. +++.+|+..+++.......     ..
T Consensus       418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~  496 (795)
T 4a2l_A          418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVV  496 (795)
T ss_dssp             TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred             CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccC
Confidence            757778887889999988776433221    1345799999999888777665 7899999887765432211     12


Q ss_pred             cccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          385 KTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       385 ~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      ...|.++...+++.|..|+. +-|..||..++..  .+...... ..-....|.++..+++|.+.++. .. .|..|+..
T Consensus       497 ~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~-~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~  570 (795)
T 4a2l_A          497 SKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPV-SNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEK  570 (795)
T ss_dssp             CCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCS-CGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETT
T ss_pred             CceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCC-CCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCC
Confidence            35688999999997777777 5688899876543  11100000 01123569999999999866544 34 57788765


Q ss_pred             CC
Q 011457          465 ET  466 (485)
Q Consensus       465 ~~  466 (485)
                      +.
T Consensus       571 ~~  572 (795)
T 4a2l_A          571 DK  572 (795)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.15  E-value=1.5e-09  Score=109.63  Aligned_cols=271  Identities=11%  Similarity=0.084  Sum_probs=182.1

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEc----------------------c-----------c------ccCEEEEEEcC---
Q 011457          190 FCTGSADRTIKIWDVAKGTLKLTLT----------------------G-----------H------IEQVRGLAVSS---  227 (485)
Q Consensus       190 l~tgs~dg~I~iwd~~~~~~~~~~~----------------------~-----------h------~~~V~~l~~s~---  227 (485)
                      |.+|+..|.|+|+-+.+++.+..+.                      +           +      .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            6788889999999998888776651                      0           0      11122344444   


Q ss_pred             --CCCEEEEEeC-CCcEEEEECCCCeeEEEecc-cCCceEEEEE-e-cCCCEEEEEEC------------------CCcE
Q 011457          228 --KHTYMFSAGD-DKQVKCWDLEQNKVIRSYHG-HLSGVYCLGL-H-PTIDILLTGGR------------------DSVC  283 (485)
Q Consensus       228 --~~~~l~s~~~-dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~l~sg~~------------------dg~i  283 (485)
                        ||++++++.. ++.|.+.|+.+.++.+.+.- ....+..+++ . |+++++++++.                  ++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence              7888887765 55799999999998885532 2345788888 4 89999988852                  4679


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC--------------------------------------CE
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS--------------------------------------TI  325 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg--------------------------------------~I  325 (485)
                      .+.|..+.+.+.++.--. ....+.++|+++++++.+.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999998888876322 456677899999999888654                                      46


Q ss_pred             EEEECCC--CeE-EeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCc------------eeeeeccCCcccE
Q 011457          326 KFWDLRY--GKT-MLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGE------------FLHNMLSQQKTII  388 (485)
Q Consensus       326 ~iwd~~~--~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~------------~~~~~~~~~~~~i  388 (485)
                      .+.|.++  ++. +..+.. .....++.++|||+++++++...  +.++|+.+.+            ...+.  .-....
T Consensus       257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~gP  333 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGLGP  333 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCSCE
T ss_pred             EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCCCc
Confidence            6677766  433 333332 23457799999999988887654  9999998653            22222  233457


Q ss_pred             EEEEeCCCC-eEEEEeCCCcEEEEeCCC----------CcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC---
Q 011457          389 NSMAVNEEG-VLATGGDNGSLWFWDWKS----------GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA---  454 (485)
Q Consensus       389 ~~~~~~~~~-~l~sg~~dg~I~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~---  454 (485)
                      ..++|+++| ..++..-|++|.+||+..          .+.+..+....++   +|...-.+..+++||++|+++..   
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp---Gh~~~~~g~t~~~DGk~l~~~Nk~sk  410 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP---GHLKTVMGETLDATNDWLVCLSKFSK  410 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE---EEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc---ccceeccceEeCCCCCEEEEcCCCCc
Confidence            889999999 455667799999999876          2222222221111   11111112345899999998763   


Q ss_pred             CCc----------EEEecCCCCC
Q 011457          455 DKT----------IKMWREDETA  467 (485)
Q Consensus       455 Dg~----------I~iW~~~~~~  467 (485)
                      |..          -.++|+..+.
T Consensus       411 dr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          411 DRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cccccCCCCCCCcceEEEcCCCc
Confidence            432          1778886544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.14  E-value=8.9e-09  Score=100.47  Aligned_cols=218  Identities=11%  Similarity=0.123  Sum_probs=150.7

Q ss_pred             cCCCEEEE-EeCCCeEEEEECCCC----ceEEEEc-------ccccCEEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q 011457          185 HSNTWFCT-GSADRTIKIWDVAKG----TLKLTLT-------GHIEQVRGLAVSSKHTYMFSAGDD------KQVKCWDL  246 (485)
Q Consensus       185 p~~~~l~t-gs~dg~I~iwd~~~~----~~~~~~~-------~h~~~V~~l~~s~~~~~l~s~~~d------g~V~iwd~  246 (485)
                      ++.++|+. |..++.|.|+|+.+.    +...++.       .....-..+...|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            67776654 556789999999766    6666663       111245667888999 66666555      78999999


Q ss_pred             CCCeeEEEecccC---CceEEEEEecCCCEEEEEE-------------------CCCcEEEEECCCCceEEEeccC--Cc
Q 011457          247 EQNKVIRSYHGHL---SGVYCLGLHPTIDILLTGG-------------------RDSVCRVWDIRTKMQIFALAGH--DN  302 (485)
Q Consensus       247 ~~~~~~~~~~~h~---~~v~~l~~~~~~~~l~sg~-------------------~dg~i~iwd~~~~~~~~~~~~~--~~  302 (485)
                      ++++.+.++....   .--+.+-|+|+++.+++..                   .+.+|.+||+.+++.+.++..-  ..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999999986322   2245688899999888885                   3689999999998877777642  13


Q ss_pred             cEEEEEE--cCCCCEEEEEe------CCCCEEEEECCCCeE--EeE--eccC----------------CCceEEEEECCC
Q 011457          303 TVCSVFT--RPTDPQVVTGS------HDSTIKFWDLRYGKT--MLT--LTHH----------------KKSVRAMALHPT  354 (485)
Q Consensus       303 ~v~~l~~--~~~~~~l~s~s------~dg~I~iwd~~~~~~--~~~--~~~~----------------~~~v~~l~~~p~  354 (485)
                      ....+.|  +|+++++++++      .+++|.+|....++.  ...  +...                ......|.+++|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            4455655  99999988777      466887766544421  111  1110                234788999999


Q ss_pred             CCEEEEEcCCC--EEEEECCC---CceeeeeccCCc-------------ccEEEEEeCCCC-eEEEEe
Q 011457          355 EDCFASASAEN--IKKFNLPK---GEFLHNMLSQQK-------------TIINSMAVNEEG-VLATGG  403 (485)
Q Consensus       355 ~~~l~~~~~~~--i~i~d~~~---~~~~~~~~~~~~-------------~~i~~~~~~~~~-~l~sg~  403 (485)
                      +++|.++..+.  |.+||+..   .+.+..+..+..             ..-..+.++++| +|+++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99998887764  99999853   344444433211             135788999999 666665

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=1e-08  Score=107.93  Aligned_cols=271  Identities=13%  Similarity=0.095  Sum_probs=177.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccC----------E-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ----------V-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      +..+++++.++.|..+|..+|+.+..+......          + ..+++  .+..+++++.|+.|..+|.++|+.+..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            556777778899999999999999887543211          0 11222  3457888889999999999999999887


Q ss_pred             cccC----CceEE-EEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCC-----------------------
Q 011457          256 HGHL----SGVYC-LGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHD-----------------------  301 (485)
Q Consensus       256 ~~h~----~~v~~-l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~-----------------------  301 (485)
                      ....    ..+.+ ..+. + ..++++..      +|.|..+|.++++.+..+....                       
T Consensus       144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            5421    11111 1111 3 45555543      5899999999999998875210                       


Q ss_pred             --------ccEEEEEEcCCCCEEEEEeCCCC-------------------EEEEECCCCeEEeEeccC--C-------Cc
Q 011457          302 --------NTVCSVFTRPTDPQVVTGSHDST-------------------IKFWDLRYGKTMLTLTHH--K-------KS  345 (485)
Q Consensus       302 --------~~v~~l~~~~~~~~l~s~s~dg~-------------------I~iwd~~~~~~~~~~~~~--~-------~~  345 (485)
                              .....+++.++...++.++.++.                   |..+|.++|+.+..+...  .       .+
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence                    01124678888889998887763                   999999999998877542  1       22


Q ss_pred             eEEEEECCCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCc-----------cc-----------------------
Q 011457          346 VRAMALHPTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQK-----------TI-----------------------  387 (485)
Q Consensus       346 v~~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~-----------~~-----------------------  387 (485)
                      .....+..++.   .++.++.++ ++++|..+|+.+........           ..                       
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~  381 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence            22223333564   567777666 99999999998743311110           00                       


Q ss_pred             -EEEEEeCCCC-eEEEE------------------------------------eCCCcEEEEeCCCCcccccceeeeccC
Q 011457          388 -INSMAVNEEG-VLATG------------------------------------GDNGSLWFWDWKSGHNFQQAQTIVQPG  429 (485)
Q Consensus       388 -i~~~~~~~~~-~l~sg------------------------------------~~dg~I~iwd~~~~~~~~~~~~~~~~~  429 (485)
                       -..++++|+. ++++.                                    ..+|.|..||..+|+........    
T Consensus       382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----  457 (668)
T 1kv9_A          382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----  457 (668)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----
T ss_pred             CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----
Confidence             0124566654 33321                                    12478999999999877665431    


Q ss_pred             CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                           .......+...+.+++.++.||.|+.||..+++...
T Consensus       458 -----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          458 -----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             -----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             -----CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence                 111222344467899999999999999999887543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.12  E-value=3.3e-08  Score=90.70  Aligned_cols=204  Identities=10%  Similarity=0.012  Sum_probs=142.6

Q ss_pred             CcceEEEEecCCc--ceEEEEEccCCCEEEEEeC--CCeEEEEECCCCceEEEEcccc-cCEEEEEEcCCCCEEEE-EeC
Q 011457          164 PWKCYRVISGHLG--WVRSVAFDHSNTWFCTGSA--DRTIKIWDVAKGTLKLTLTGHI-EQVRGLAVSSKHTYMFS-AGD  237 (485)
Q Consensus       164 ~~~~~~~l~~H~~--~V~~l~~sp~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s-~~~  237 (485)
                      .++.++++ .|..  ....++|++++.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  +..|+. .-.
T Consensus         8 ~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            8 IVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             CceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            34566666 3553  3689999998765555443  5799999999999988875322 233355665  444544 446


Q ss_pred             CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-----ccEEEEEEcCC
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-----NTVCSVFTRPT  312 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~  312 (485)
                      ++.|.++|..+.+.+.++......  ...+++|++.++++..++.|.++|..+.+.+..+.--.     .....+.|. +
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            899999999999999988532111  23456688877777788999999999998887775221     135677777 6


Q ss_pred             CCEEEEEeCCCCEEEEECCCCeEEeEeccCC-------------CceEEEEECCCCCEEEEEcCCC--EEEEECCC
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-------------KSVRAMALHPTEDCFASASAEN--IKKFNLPK  373 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-------------~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~  373 (485)
                      +..++....++.|.+.|..+++.+..+....             .....|+|+|++..+++++...  +...++..
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            6444444467899999999999988875421             3568999999987666655443  77777644

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=3.1e-08  Score=104.25  Aligned_cols=235  Identities=12%  Similarity=0.117  Sum_probs=157.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccc----cCEEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHI----EQVRG-LAVSSKHTYMFSAGD------DKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~----~~V~~-l~~s~~~~~l~s~~~------dg~V~iwd~~~~~~~~~~  255 (485)
                      +..++.++.|+.|..+|..+|+.+..+....    ..+.+ ..+. ++ .++++..      +|.|..+|.++|+.+..+
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            5578888899999999999999988776421    11111 0111 33 4555533      589999999999999887


Q ss_pred             cccC-------------------------------CceEEEEEecCCCEEEEEECCCc-------------------EEE
Q 011457          256 HGHL-------------------------------SGVYCLGLHPTIDILLTGGRDSV-------------------CRV  285 (485)
Q Consensus       256 ~~h~-------------------------------~~v~~l~~~~~~~~l~sg~~dg~-------------------i~i  285 (485)
                      ....                               .....+++.++.+.++.++.++.                   |..
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            5210                               01124688888888888887763                   999


Q ss_pred             EECCCCceEEEecc--CC-------ccEEEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCC----------
Q 011457          286 WDIRTKMQIFALAG--HD-------NTVCSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHK----------  343 (485)
Q Consensus       286 wd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------  343 (485)
                      +|.++++.+..+..  |.       .+.....+..+++   .++.++.+|.++++|..+|+.+.......          
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~  354 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA  354 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence            99999999988764  22       2222222233554   68899999999999999999874432111          


Q ss_pred             --Cce------------------------EEEEECCCCCEEEEEc-----------------------------------
Q 011457          344 --KSV------------------------RAMALHPTEDCFASAS-----------------------------------  362 (485)
Q Consensus       344 --~~v------------------------~~l~~~p~~~~l~~~~-----------------------------------  362 (485)
                        .++                        ..++++|+..++....                                   
T Consensus       355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~  434 (668)
T 1kv9_A          355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (668)
T ss_dssp             TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence              000                        1256777766555311                                   


Q ss_pred             -C-CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          363 -A-ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       363 -~-~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                       . +.|..||..+++.+.+........-..+. ..++++++|+.||.++.||.++|+.+..+..
T Consensus       435 ~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~-t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          435 VVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEESSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CccceEEEEeCCCCcEEEEccCCCCCcCceeE-eCCCEEEEECCcccchhhhhhcChhheEecC
Confidence             1 23889999999988776433221111222 2455888899999999999999998877654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.08  E-value=3.6e-07  Score=84.49  Aligned_cols=220  Identities=8%  Similarity=0.024  Sum_probs=139.3

Q ss_pred             cceEEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEE
Q 011457          176 GWVRSVAFDHSNTWFC-TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~  253 (485)
                      ..+.+++|++++..|+ +-..++.|.++++........+.........+++++++..|+.+ ...+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4578999999665554 44457899999987665444443333578899999976555544 456899999987543222


Q ss_pred             EecccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEE
Q 011457          254 SYHGHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWD  329 (485)
Q Consensus       254 ~~~~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd  329 (485)
                      ...........++++|++..|+.+..   .+.|..+++..................+++++++..|+.+. ..+.|.++|
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            22222356789999997666665554   36888888864332222222334678899999877665554 567899999


Q ss_pred             CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeeeccCCcccEEEEEeCCCC
Q 011457          330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  397 (485)
                      .........+.. ......++.. .+.++++...+ .|.++|..+++.+..+..+.......+++.|++
T Consensus       196 ~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          196 PAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             cCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            875443333332 2334566664 34344443333 399999999988877654432234555555554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.06  E-value=6.3e-08  Score=99.94  Aligned_cols=240  Identities=10%  Similarity=0.084  Sum_probs=155.7

Q ss_pred             EEEccCCCE----EEEEeCCCeEEEEECCCCceEEEEcccc----cCEEE-EEEcCCCCEEEEEe------CCCcEEEEE
Q 011457          181 VAFDHSNTW----FCTGSADRTIKIWDVAKGTLKLTLTGHI----EQVRG-LAVSSKHTYMFSAG------DDKQVKCWD  245 (485)
Q Consensus       181 l~~sp~~~~----l~tgs~dg~I~iwd~~~~~~~~~~~~h~----~~V~~-l~~s~~~~~l~s~~------~dg~V~iwd  245 (485)
                      ++++|.+..    ++.++.|+.|..+|..+|+.+.......    ..+.+ -.+. ++ .+++++      .+|.|+.+|
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D  188 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD  188 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence            445443444    8888899999999999999887764321    01111 1111 34 455554      389999999


Q ss_pred             CCCCeeEEEecccCCc-------------------------------------e-EEEEEecCCCEEEEEECCC------
Q 011457          246 LEQNKVIRSYHGHLSG-------------------------------------V-YCLGLHPTIDILLTGGRDS------  281 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~-------------------------------------v-~~l~~~~~~~~l~sg~~dg------  281 (485)
                      .++|+.+..+......                                     + ..+++.+...+++.+..++      
T Consensus       189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~  268 (599)
T 1w6s_A          189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET  268 (599)
T ss_dssp             TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred             CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence            9999998877532111                                     0 1356667777888877653      


Q ss_pred             ----------cEEEEECCCCceEEEeccCCc----------cEEEEEEc-CCC---CEEEEEeCCCCEEEEECCCCeEEe
Q 011457          282 ----------VCRVWDIRTKMQIFALAGHDN----------TVCSVFTR-PTD---PQVVTGSHDSTIKFWDLRYGKTML  337 (485)
Q Consensus       282 ----------~i~iwd~~~~~~~~~~~~~~~----------~v~~l~~~-~~~---~~l~s~s~dg~I~iwd~~~~~~~~  337 (485)
                                .|..+|.++++.+..++....          ++. +... .++   ..++.++.+|.+.++|.++|+.+.
T Consensus       269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence                      899999999999988764221          121 2222 456   467778999999999999999887


Q ss_pred             EeccCC-------------Cce--------------------------EEEEECCCCCEEEEEc----------------
Q 011457          338 TLTHHK-------------KSV--------------------------RAMALHPTEDCFASAS----------------  362 (485)
Q Consensus       338 ~~~~~~-------------~~v--------------------------~~l~~~p~~~~l~~~~----------------  362 (485)
                      ......             .++                          ..++++|+..++++..                
T Consensus       348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~  427 (599)
T 1w6s_A          348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA  427 (599)
T ss_dssp             EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence            654211             111                          1345666655544321                


Q ss_pred             ------------------------CCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcc
Q 011457          363 ------------------------AENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       363 ------------------------~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~  418 (485)
                                              .+.+..||+.+++.+.+....... ........+++++.++.||.++.||.++|+.
T Consensus       428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAV-WGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCC-CSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCc-cCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence                                    123888999999888776332211 1111122455788899999999999999998


Q ss_pred             ccccee
Q 011457          419 FQQAQT  424 (485)
Q Consensus       419 ~~~~~~  424 (485)
                      +..++.
T Consensus       507 lW~~~l  512 (599)
T 1w6s_A          507 LWKFKI  512 (599)
T ss_dssp             EEEEEC
T ss_pred             EEEeeC
Confidence            877653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.06  E-value=3.4e-08  Score=90.57  Aligned_cols=203  Identities=15%  Similarity=0.053  Sum_probs=142.4

Q ss_pred             ceEEEEcccc--cCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEecccC-CceEEEEEecCCCEEEEEE-CCC
Q 011457          208 TLKLTLTGHI--EQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGG-RDS  281 (485)
Q Consensus       208 ~~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~-~dg  281 (485)
                      +.+.++. |.  .....+.|++++.+.++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  ++.|+.+. .++
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            3455554 43  34689999998754444443  5899999999999998875222 122345555  44555544 578


Q ss_pred             cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-----CceEEEEECCCCC
Q 011457          282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-----KSVRAMALHPTED  356 (485)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~  356 (485)
                      .+.++|..+.+.+.++..-...-  ..+++++..++++..++.|.++|..+.+.+..+....     ..++.+.|. ++.
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence            99999999999888885321211  2245577777777778999999999988877765322     136678888 676


Q ss_pred             EEEEEcCC-CEEEEECCCCceeeeeccC------------CcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCC
Q 011457          357 CFASASAE-NIKKFNLPKGEFLHNMLSQ------------QKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       357 ~l~~~~~~-~i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~  416 (485)
                      .++..... .|.+.|..+++.+..+...            .....+.+++++++  +++++...+.|...++...
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            66555444 4999999999988877432            11467999999987  7777778899999987654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.02  E-value=7e-08  Score=87.51  Aligned_cols=194  Identities=10%  Similarity=0.056  Sum_probs=137.4

Q ss_pred             CcceEEEEecCCcc--eEEEEEccCCCEEEEEeCCC--eEEEEECCCCceEEEEcccccC-EEEEEEcCCCCEEEEE-eC
Q 011457          164 PWKCYRVISGHLGW--VRSVAFDHSNTWFCTGSADR--TIKIWDVAKGTLKLTLTGHIEQ-VRGLAVSSKHTYMFSA-GD  237 (485)
Q Consensus       164 ~~~~~~~l~~H~~~--V~~l~~sp~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s~-~~  237 (485)
                      .++.++++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+...... -..+++.  +..|+.. -.
T Consensus        30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~  105 (262)
T 3nol_A           30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred             ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEee
Confidence            35566666 45543  5889998 677777777766  8999999999998887643322 1234443  4445544 46


Q ss_pred             CCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC--C---ccEEEEEEcCC
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH--D---NTVCSVFTRPT  312 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~l~~~~~  312 (485)
                      ++.+.+||..+.+.+.++.-..   ....+.++++.|+.+..++.|.++|..+.+.+..+.-.  .   ..++.+.+. +
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~  181 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D  181 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence            8999999999999999987422   22334467777777777888999999999888776532  1   234557776 6


Q ss_pred             CCEEEEEeCCCCEEEEECCCCeEEeEeccC------------CCceEEEEECCCCCEEEEEcCCC
Q 011457          313 DPQVVTGSHDSTIKFWDLRYGKTMLTLTHH------------KKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       313 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~------------~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      |...+..-.+..|.+.|.++++.+..+...            ....+.|+++|++..|...+..=
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            655555556889999999999998877542            13468999999988777776653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.02  E-value=7.3e-08  Score=99.41  Aligned_cols=271  Identities=14%  Similarity=0.088  Sum_probs=172.7

Q ss_pred             CCEEEEEeC-CCeEEEEEC-CCCceEEEEccccc-C---------E-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          187 NTWFCTGSA-DRTIKIWDV-AKGTLKLTLTGHIE-Q---------V-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       187 ~~~l~tgs~-dg~I~iwd~-~~~~~~~~~~~h~~-~---------V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      +..++.++. ++.|.-+|. .+|+.+..+..... .         + ..+++  .+..+++++.|+.|..+|..+++.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445666666 889999999 89999887753221 0         0 11222  35578888899999999999999988


Q ss_pred             EecccC----CceEE-EEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCCcc-------------------
Q 011457          254 SYHGHL----SGVYC-LGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDNT-------------------  303 (485)
Q Consensus       254 ~~~~h~----~~v~~-l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~-------------------  303 (485)
                      .+....    ..+.+ ..+. + ..+++++.      ++.|..+|.++++.+..+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            764221    01211 1111 3 45666654      799999999999999877532111                   


Q ss_pred             -------------------EEEEEEcCCCCEEEEEeCC----------------CCEEEEECCCCeEEeEeccCC-----
Q 011457          304 -------------------VCSVFTRPTDPQVVTGSHD----------------STIKFWDLRYGKTMLTLTHHK-----  343 (485)
Q Consensus       304 -------------------v~~l~~~~~~~~l~s~s~d----------------g~I~iwd~~~~~~~~~~~~~~-----  343 (485)
                                         ...+++.++...++.++.+                +.|..+|.++++.+..+....     
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                               0235666766777776643                259999999999988775321     


Q ss_pred             -----CceEEEEECCCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCc------------ccE--------------
Q 011457          344 -----KSVRAMALHPTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQK------------TII--------------  388 (485)
Q Consensus       344 -----~~v~~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~------------~~i--------------  388 (485)
                           .++. +....+|+   .++.++.++ ++.+|..+|+.+..+.....            ..+              
T Consensus       298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence                 1221 22224663   566666665 99999999998876532220            111              


Q ss_pred             ------------EEEEeCCCC-eEEEEe-------------------------------------CCCcEEEEeCCCCcc
Q 011457          389 ------------NSMAVNEEG-VLATGG-------------------------------------DNGSLWFWDWKSGHN  418 (485)
Q Consensus       389 ------------~~~~~~~~~-~l~sg~-------------------------------------~dg~I~iwd~~~~~~  418 (485)
                                  ..++++|+. ++++..                                     .+|.|..||..+++.
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~  456 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence                        134566665 444432                                     357899999999987


Q ss_pred             cccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCC
Q 011457          419 FQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPET  471 (485)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~  471 (485)
                      ........         .+....+...+..++.++.||.|+.||..+++..-.
T Consensus       457 ~W~~~~~~---------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          457 KWTKWEKF---------AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             EEEEEESS---------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEecCCC---------CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence            76654311         111122233466788899999999999988875433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=1e-06  Score=94.63  Aligned_cols=282  Identities=11%  Similarity=0.067  Sum_probs=184.1

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc--------------ccccCEEEEEEcCCCCEEEEEeCCCc
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT--------------GHIEQVRGLAVSSKHTYMFSAGDDKQ  240 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--------------~h~~~V~~l~~s~~~~~l~s~~~dg~  240 (485)
                      ...|.++...++|. |..|+..+-|.++|..++.......              .....|.++....+|. |..|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            45799999988776 5556664568899987765432211              1346799999988876 666777777


Q ss_pred             EEEEECCCCeeEEEec---------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe---ccCCccEEEEE
Q 011457          241 VKCWDLEQNKVIRSYH---------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL---AGHDNTVCSVF  308 (485)
Q Consensus       241 V~iwd~~~~~~~~~~~---------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~  308 (485)
                      |..|+..++.......         .....|.++...++++ |..|+.++-|..||..++......   ......|.++.
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~  413 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL  413 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence            9999987654332211         1235689998888776 566776667899998754322111   12346789998


Q ss_pred             EcCCCCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccC---
Q 011457          309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ---  383 (485)
Q Consensus       309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~---  383 (485)
                      ..+++. |.+|+.++-|..+|..+++......  .....|.++...+++.+.++.. +++..|+..+++........   
T Consensus       414 ~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~  491 (781)
T 3v9f_A          414 KDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQ  491 (781)
T ss_dssp             ECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred             ECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence            887775 5557777779999987765433221  2345799999988888666655 78999998877654322111   


Q ss_pred             -CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          384 -QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       384 -~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                       ....|.++...++|.|..|+.++-|..||..+++. ..+.   .... -....|.++..+++|.+.++ +.+|.|..|+
T Consensus       492 ~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~---~~~~-l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d  565 (781)
T 3v9f_A          492 LLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFN---QYEG-FCSNTINQIYRSSKGQMWLA-TGEGLVCFPS  565 (781)
T ss_dssp             CSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEEC---TTTT-CSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred             cccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEcc---CCCC-CCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence             13578999999999888888766688898766532 1111   1111 12456999999999976554 4467558888


Q ss_pred             CCCCC
Q 011457          463 EDETA  467 (485)
Q Consensus       463 ~~~~~  467 (485)
                      ..+..
T Consensus       566 ~~~~~  570 (781)
T 3v9f_A          566 ARNFD  570 (781)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            76553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.01  E-value=8e-08  Score=99.20  Aligned_cols=272  Identities=11%  Similarity=0.088  Sum_probs=173.1

Q ss_pred             CCEEEEEeC-CCeEEEEEC-CCCceEEEEcccccC-----------EEEEEEcCCCCE----EEEEeCCCcEEEEECCCC
Q 011457          187 NTWFCTGSA-DRTIKIWDV-AKGTLKLTLTGHIEQ-----------VRGLAVSSKHTY----MFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       187 ~~~l~tgs~-dg~I~iwd~-~~~~~~~~~~~h~~~-----------V~~l~~s~~~~~----l~s~~~dg~V~iwd~~~~  249 (485)
                      +..+++++. ++.|.-+|. .+|+.+..+......           ...+++.|.+..    |++++.|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            455666666 889999999 899998877543210           123455444444    888889999999999999


Q ss_pred             eeEEEecccC----CceEE-EEEecCCCEEEEEE------CCCcEEEEECCCCceEEEeccCCcc---------------
Q 011457          250 KVIRSYHGHL----SGVYC-LGLHPTIDILLTGG------RDSVCRVWDIRTKMQIFALAGHDNT---------------  303 (485)
Q Consensus       250 ~~~~~~~~h~----~~v~~-l~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------  303 (485)
                      +.+.......    ..+.+ -.+. + ..+++++      .+|.|+.+|.++++.+..+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            9987764321    01111 1111 3 3555555      3899999999999999887632211               


Q ss_pred             ----------------------E-EEEEEcCCCCEEEEEeCCC----------------CEEEEECCCCeEEeEeccCCC
Q 011457          304 ----------------------V-CSVFTRPTDPQVVTGSHDS----------------TIKFWDLRYGKTMLTLTHHKK  344 (485)
Q Consensus       304 ----------------------v-~~l~~~~~~~~l~s~s~dg----------------~I~iwd~~~~~~~~~~~~~~~  344 (485)
                                            + ..+.+.+...+++.++.++                .|..+|.++|+.+..+.....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  0 1345667777888887653                799999999999887754321


Q ss_pred             ----------ceEEEEEC-CCC---CEEEEEcCCC-EEEEECCCCceeeeeccCC------------cccE---------
Q 011457          345 ----------SVRAMALH-PTE---DCFASASAEN-IKKFNLPKGEFLHNMLSQQ------------KTII---------  388 (485)
Q Consensus       345 ----------~v~~l~~~-p~~---~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~------------~~~i---------  388 (485)
                                ++. +... .+|   ..++.++.++ ++++|..+|+.+.......            ...+         
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  378 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM  378 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence                      121 2222 456   4566666666 9999999999887653211            0001         


Q ss_pred             -----------------EEEEeCCCC-eEEEE---------------------------------e------CCCcEEEE
Q 011457          389 -----------------NSMAVNEEG-VLATG---------------------------------G------DNGSLWFW  411 (485)
Q Consensus       389 -----------------~~~~~~~~~-~l~sg---------------------------------~------~dg~I~iw  411 (485)
                                       ..++++|+. ++++.                                 +      .+|.|.-|
T Consensus       379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~  458 (599)
T 1w6s_A          379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY  458 (599)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred             CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence                             123444443 22221                                 1      35789999


Q ss_pred             eCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       412 d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      |+.+|+.........         .+..-.....+.+++.++.||.|+.||..+++..-
T Consensus       459 D~~tG~~~W~~~~~~---------~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW  508 (599)
T 1w6s_A          459 NAITGDYKWEKMERF---------AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW  508 (599)
T ss_dssp             CTTTCCEEEEEEESS---------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCCCCEEeEecCCC---------CccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence            999998766654210         01111122346788889999999999999887543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.01  E-value=1.3e-07  Score=97.46  Aligned_cols=234  Identities=12%  Similarity=0.118  Sum_probs=154.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccc--c--CEEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHI--E--QVRG-LAVSSKHTYMFSAGD------DKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~--~V~~-l~~s~~~~~l~s~~~------dg~V~iwd~~~~~~~~~~  255 (485)
                      +..++.++.|+.|..+|..+|+.+.......  .  .+.+ .... ++ .+++++.      ++.|..+|..+++.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            5678888889999999999999987765321  0  1111 1111 34 4555554      799999999999998877


Q ss_pred             cccCCc-------------------------------------e-EEEEEecCCCEEEEEECC----------------C
Q 011457          256 HGHLSG-------------------------------------V-YCLGLHPTIDILLTGGRD----------------S  281 (485)
Q Consensus       256 ~~h~~~-------------------------------------v-~~l~~~~~~~~l~sg~~d----------------g  281 (485)
                      ......                                     + ..+++.++...++.+..+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            532110                                     0 135677776777776642                3


Q ss_pred             cEEEEECCCCceEEEeccC--C--------ccEEEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCC-----
Q 011457          282 VCRVWDIRTKMQIFALAGH--D--------NTVCSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHK-----  343 (485)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~--~--------~~v~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----  343 (485)
                      .|..+|.++++.+..++..  .        .++. +....+++   .++.++.+|.+.++|..+++.+..+....     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            5999999999998887632  1        1121 22223563   57788999999999999999887654321     


Q ss_pred             --------Cce--------------------------EEEEECCCCCEEEEEcC--------------------------
Q 011457          344 --------KSV--------------------------RAMALHPTEDCFASASA--------------------------  363 (485)
Q Consensus       344 --------~~v--------------------------~~l~~~p~~~~l~~~~~--------------------------  363 (485)
                              .++                          ..++++|+..+++....                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    111                          23567777666655431                          


Q ss_pred             ------------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          364 ------------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       364 ------------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                                  +.+..||..+++.+.++...... ........++.+++++.||.|+.||.++|+.+..+..
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~-~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA-WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC-CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCc-cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence                        23889999999988776433211 1111122356788899999999999999998877653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=2.9e-06  Score=91.16  Aligned_cols=281  Identities=11%  Similarity=0.064  Sum_probs=180.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-------GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ  248 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~  248 (485)
                      ..|.+|...+++.+.+ |+.+ -+.+||..+++......       .....|.++...++|. |..|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            5699999988887544 4455 68999987765432211       1245799999888776 55566645688999877


Q ss_pred             CeeEEEec--------------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec---------cCCccEE
Q 011457          249 NKVIRSYH--------------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA---------GHDNTVC  305 (485)
Q Consensus       249 ~~~~~~~~--------------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~  305 (485)
                      ++......              .....|.++...++|+ |..|+.++-|..|+..+........         .....|.
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            65432111              1345789999888876 6677877779999987654332211         1235689


Q ss_pred             EEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe---ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec-
Q 011457          306 SVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL---THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML-  381 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~-  381 (485)
                      ++...+++. |.+|+.++-|..||..++......   ......|.++...+++.+.+....+++..++..+++...... 
T Consensus       367 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~  445 (781)
T 3v9f_A          367 SVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE  445 (781)
T ss_dssp             EEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST
T ss_pred             EEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC
Confidence            998887765 556776777999998754332211   123457899999988888776655779999987776433221 


Q ss_pred             cCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       382 ~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      ......|.++...+++.|..|+. +-|..||..+++... +...  .........|.++..+++|.+.+ |+.++-|..|
T Consensus       446 ~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~  520 (781)
T 3v9f_A          446 KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIH-HYDT--SNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIY  520 (781)
T ss_dssp             TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCE-EECT--TTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEe-cccC--cccccccceeEEEEEcCCCCEEE-EEcCCCEEEE
Confidence            12346788999998897777777 568899987654322 1110  00001235699999999987655 4444447778


Q ss_pred             cCCCC
Q 011457          462 REDET  466 (485)
Q Consensus       462 ~~~~~  466 (485)
                      +.+..
T Consensus       521 ~~~~~  525 (781)
T 3v9f_A          521 TPDMQ  525 (781)
T ss_dssp             CTTCC
T ss_pred             eCCCC
Confidence            76544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.96  E-value=4.1e-07  Score=93.95  Aligned_cols=256  Identities=11%  Similarity=0.088  Sum_probs=161.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEccccc----CEE-EEEEcC---CCC-EEEEEe------CCCcEEEEECCCCee
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE----QVR-GLAVSS---KHT-YMFSAG------DDKQVKCWDLEQNKV  251 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----~V~-~l~~s~---~~~-~l~s~~------~dg~V~iwd~~~~~~  251 (485)
                      +..++.++.|+.|..+|..+|+.+........    .+. .-.+..   +++ .+++++      .++.|..+|.++++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            55678888999999999999999877653221    111 111111   223 566654      378999999999998


Q ss_pred             EEEecccCCce-----------------------------------------EEEEEecCCCEEEEEEC-----------
Q 011457          252 IRSYHGHLSGV-----------------------------------------YCLGLHPTIDILLTGGR-----------  279 (485)
Q Consensus       252 ~~~~~~h~~~v-----------------------------------------~~l~~~~~~~~l~sg~~-----------  279 (485)
                      +.........+                                         ..+++.|...+++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            87654211000                                         13466677777777763           


Q ss_pred             ---------C----CcEEEEECCCCceEEEecc--CC--------ccEEEEEEc-CCCC---EEEEEeCCCCEEEEECCC
Q 011457          280 ---------D----SVCRVWDIRTKMQIFALAG--HD--------NTVCSVFTR-PTDP---QVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       280 ---------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~l~~~-~~~~---~l~s~s~dg~I~iwd~~~  332 (485)
                               |    +.|..+|..+++.+..++.  |.        .++. +... .+++   .++.++.+|.++++|..+
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                     2    6899999999999988753  22        1121 1221 4563   788899999999999999


Q ss_pred             CeEEeEeccCC-------------Cce--------------------------------EEEEECCCCCEEEEEc-----
Q 011457          333 GKTMLTLTHHK-------------KSV--------------------------------RAMALHPTEDCFASAS-----  362 (485)
Q Consensus       333 ~~~~~~~~~~~-------------~~v--------------------------------~~l~~~p~~~~l~~~~-----  362 (485)
                      |+.+..+....             .++                                ..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            99887654321             000                                1345566554444322     


Q ss_pred             -----------------------------CCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          363 -----------------------------AENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       363 -----------------------------~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                                                   .+.+..||+.+++.+.+....... ........+++++.|+.||.++.||.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC-CSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC-cccceEeCCCEEEEECCCCcEEEEEC
Confidence                                         123888999999988776433211 11111224568888999999999999


Q ss_pred             CCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457          414 KSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                      ++|+.+.+++...       ...-.-+.|..+|+..++
T Consensus       515 ~tG~~lW~~~~~~-------g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          515 KSGKELWKFQTGS-------GIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             TTCCEEEEEECSS-------CCCSCCEEEEETTEEEEE
T ss_pred             CCCCEEEEecCCC-------CcccCceEEEECCEEEEE
Confidence            9999988765411       111112556677865443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.96  E-value=3.6e-07  Score=87.09  Aligned_cols=236  Identities=13%  Similarity=0.072  Sum_probs=149.4

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc--------------------cccCEEEEEEcC-CCCE
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG--------------------HIEQVRGLAVSS-KHTY  231 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------------------h~~~V~~l~~s~-~~~~  231 (485)
                      +.-....+++|++++++++++..++.|..|+..+++... +..                    ....+..+++.+ +++ 
T Consensus        16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-   93 (322)
T 2fp8_A           16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-   93 (322)
T ss_dssp             CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-
T ss_pred             CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-
Confidence            333456788999999978888889999999987654432 210                    113578999997 555 


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEec----c-cCCceEEEEEec-CCCEEEEEEC-----------------CCcEEEEEC
Q 011457          232 MFSAGDDKQVKCWDLEQNKVIRSYH----G-HLSGVYCLGLHP-TIDILLTGGR-----------------DSVCRVWDI  288 (485)
Q Consensus       232 l~s~~~dg~V~iwd~~~~~~~~~~~----~-h~~~v~~l~~~~-~~~~l~sg~~-----------------dg~i~iwd~  288 (485)
                      |+++...+.|..+|..+++. ..+.    + .......+++.+ +|++.++-..                 ++.|..||.
T Consensus        94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            55555555688898775532 2221    1 123468899999 8886665432                 367888998


Q ss_pred             CCCceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCCCe--EEeEeccCCCceEEEEECCCCCEEEEEcC--
Q 011457          289 RTKMQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHPTEDCFASASA--  363 (485)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~--  363 (485)
                      .+++...... .......++++++++.|+++ +.++.|..|++....  ....+..... ...+++.++|.++++...  
T Consensus       173 ~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          173 STKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             TTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred             CCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcc
Confidence            7665433222 12344678999999876655 556889999987421  1111111223 788999999997777654  


Q ss_pred             ---------CCEEEEECCCCceeeeeccCC---cccEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 011457          364 ---------ENIKKFNLPKGEFLHNMLSQQ---KTIINSMAVNEEG-VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       364 ---------~~i~i~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~  415 (485)
                               ..|..++. .++.+..+....   -..+..+.+. ++ ++++...++.|..+++..
T Consensus       251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred             cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence                     23778875 577666553332   2345555553 45 444445678898888753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.94  E-value=1.7e-07  Score=84.97  Aligned_cols=189  Identities=15%  Similarity=0.195  Sum_probs=130.3

Q ss_pred             eEEEEcccc--cCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE-CCCcE
Q 011457          209 LKLTLTGHI--EQVRGLAVSSKHTYMFSAGDDK--QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVC  283 (485)
Q Consensus       209 ~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i  283 (485)
                      .+.++. |.  .....|.|+ ++.++.+.+.+|  .|+++|+++++.++.+... .......+.++++.|+... .++.+
T Consensus        33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence            445553 44  335889998 677667777766  9999999999999988643 3333333333455555554 48899


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC--C---CceEEEEECCCCCEE
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH--K---KSVRAMALHPTEDCF  358 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~---~~v~~l~~~p~~~~l  358 (485)
                      .+||..+.+.+.++.... .=..++  +++..|+.+..++.|.++|..+.+.+..+...  .   ..++.+.|. +|..+
T Consensus       110 ~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly  185 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF  185 (262)
T ss_dssp             EEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence            999999999998887432 212333  46777777666788999999999888776542  1   234567776 67766


Q ss_pred             EEEcCCC-EEEEECCCCceeeeeccC-----------CcccEEEEEeCCCC-eEEEEeC
Q 011457          359 ASASAEN-IKKFNLPKGEFLHNMLSQ-----------QKTIINSMAVNEEG-VLATGGD  404 (485)
Q Consensus       359 ~~~~~~~-i~i~d~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~-~l~sg~~  404 (485)
                      +.....+ |.+.|..+++.+..+...           .....+.++++|++ .|++.+.
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            6664444 999999999988776331           12467999999987 5544443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.93  E-value=2.7e-07  Score=93.16  Aligned_cols=230  Identities=10%  Similarity=0.031  Sum_probs=156.9

Q ss_pred             cCCCEEEEEeC-CCeEEEEECCCCceEEEEccc-ccCEEEEEE-c-CCCCEEEEEe------------------CCCcEE
Q 011457          185 HSNTWFCTGSA-DRTIKIWDVAKGTLKLTLTGH-IEQVRGLAV-S-SKHTYMFSAG------------------DDKQVK  242 (485)
Q Consensus       185 p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~-s-~~~~~l~s~~------------------~dg~V~  242 (485)
                      +||++++.... ++.|.+.|+.+.++...+.-. ...+..+++ + |++.++++++                  .++.|.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37888777665 467999999999988855422 345788888 5 9999999985                  346899


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--------------------------------------cEE
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--------------------------------------VCR  284 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--------------------------------------~i~  284 (485)
                      ++|.++.+.+.++.-.. ....++++|+|+++++.+.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999999998886322 456788999999999888653                                      466


Q ss_pred             EEECCC--Cce-EEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCe------------EEeEeccCCCceEE
Q 011457          285 VWDIRT--KMQ-IFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGK------------TMLTLTHHKKSVRA  348 (485)
Q Consensus       285 iwd~~~--~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~------------~~~~~~~~~~~v~~  348 (485)
                      +.|.++  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+            ....+ .-....+.
T Consensus       258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h  335 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLH  335 (595)
T ss_dssp             EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEE
T ss_pred             EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcce
Confidence            677766  433 333331 23456789999999887665 57899999998653            22222 23456889


Q ss_pred             EEECCCCCEEEEEcCCC-EEEEECCC----------CceeeeeccCCcccEE----EEEeCCCC-eEEEEeCC--CcE--
Q 011457          349 MALHPTEDCFASASAEN-IKKFNLPK----------GEFLHNMLSQQKTIIN----SMAVNEEG-VLATGGDN--GSL--  408 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~~-i~i~d~~~----------~~~~~~~~~~~~~~i~----~~~~~~~~-~l~sg~~d--g~I--  408 (485)
                      ++|+|+|..+++..-++ +.+|++.+          .+.+.++..+....-.    .+..++|| +|++...-  ..+  
T Consensus       336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~  415 (595)
T 1fwx_A          336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN  415 (595)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred             EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence            99999995455555555 99999976          4445554332221111    22457889 66665432  233  


Q ss_pred             ---------EEEeCCCCc
Q 011457          409 ---------WFWDWKSGH  417 (485)
Q Consensus       409 ---------~iwd~~~~~  417 (485)
                               .++|+..++
T Consensus       416 ~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          416 VGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCSSCCEEEEEEECSSSS
T ss_pred             CCCCCCCcceEEEcCCCc
Confidence                     889985444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.92  E-value=1e-06  Score=91.02  Aligned_cols=272  Identities=15%  Similarity=0.090  Sum_probs=169.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccCE---------EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV---------RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V---------~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      +..+++++.++.|.-+|..+|+.+..+.......         ..+++  .+..++.++.|+.|..+|.++|+.+..+..
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            3445555564459999999999988776432210         11222  345688888999999999999999887653


Q ss_pred             cCC----ceE-EEEEec---CCC-EEEEEE------CCCcEEEEECCCCceEEEeccCCccE------------------
Q 011457          258 HLS----GVY-CLGLHP---TID-ILLTGG------RDSVCRVWDIRTKMQIFALAGHDNTV------------------  304 (485)
Q Consensus       258 h~~----~v~-~l~~~~---~~~-~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~v------------------  304 (485)
                      ...    .+. .-.+..   +++ .+++++      .+|.|..+|..+++.+.........+                  
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence            221    111 111111   122 566654      37899999999999888654211000                  


Q ss_pred             -----------------------EEEEEcCCCCEEEEEeC--------------------C----CCEEEEECCCCeEEe
Q 011457          305 -----------------------CSVFTRPTDPQVVTGSH--------------------D----STIKFWDLRYGKTML  337 (485)
Q Consensus       305 -----------------------~~l~~~~~~~~l~s~s~--------------------d----g~I~iwd~~~~~~~~  337 (485)
                                             ..+++.+...+++++..                    |    +.|..+|.++|+.+.
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W  305 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence                                   12456667778877763                    2    579999999999988


Q ss_pred             Eecc--CC--------CceEEEEEC-CCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCc------------cc---
Q 011457          338 TLTH--HK--------KSVRAMALH-PTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQK------------TI---  387 (485)
Q Consensus       338 ~~~~--~~--------~~v~~l~~~-p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~------------~~---  387 (485)
                      .+..  |.        .++. +... .+|+   .++.++.++ ++.+|..+|+.+..+.....            ..   
T Consensus       306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~  384 (582)
T 1flg_A          306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER  384 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred             EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence            8753  21        1221 2221 4564   666777766 99999999998866533210            00   


Q ss_pred             -----------------------------EEEEEeCCCC-eEEEEe---------------------------------C
Q 011457          388 -----------------------------INSMAVNEEG-VLATGG---------------------------------D  404 (485)
Q Consensus       388 -----------------------------i~~~~~~~~~-~l~sg~---------------------------------~  404 (485)
                                                   -..++++|+. ++++..                                 .
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~  464 (582)
T 1flg_A          385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH  464 (582)
T ss_dssp             TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred             cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence                                         0123455554 444322                                 2


Q ss_pred             CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          405 NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       405 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      +|.|.-||+.+|+...+..... +   .....     ....+.+++.++.||.|+.||.++++..-
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~---~~~g~-----~~tagglvf~g~~dg~l~A~D~~tG~~lW  521 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-P---LWAGV-----LATAGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-C---CCSCC-----EEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-C---Ccccc-----eEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence            5889999999998776654311 0   11111     12236688889999999999999887543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.90  E-value=1.2e-06  Score=78.77  Aligned_cols=195  Identities=10%  Similarity=0.049  Sum_probs=135.9

Q ss_pred             CcceEEEEecCCc--ceEEEEEccCCCEEEEEeCC--CeEEEEECCCCceEEEEcccccC-EEEEEEcCCCCEEEEEeCC
Q 011457          164 PWKCYRVISGHLG--WVRSVAFDHSNTWFCTGSAD--RTIKIWDVAKGTLKLTLTGHIEQ-VRGLAVSSKHTYMFSAGDD  238 (485)
Q Consensus       164 ~~~~~~~l~~H~~--~V~~l~~sp~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s~~~d  238 (485)
                      .++.++++ .|..  -...+.|++ +.++.+.+.+  ..|+++|+.+++.+..+...... -..+++.. ++.....-.+
T Consensus         8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~   84 (243)
T 3mbr_X            8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRN   84 (243)
T ss_dssp             CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSS
T ss_pred             ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeC
Confidence            45666666 5654  366999986 5666666665  49999999999998887643221 13344442 3333444578


Q ss_pred             CcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCC-----ccEEEEEEcCCC
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHD-----NTVCSVFTRPTD  313 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~~  313 (485)
                      +.+.+||..+.+.+.++..... -+.+  .+++..|+.+..++.|.++|..+.+.+..+.-..     ..++.+.+. ++
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G  160 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG  160 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             CEEEEEECCcCcEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence            9999999999999999874322 2344  4567777777779999999999998887775321     244566665 56


Q ss_pred             CEEEEEeCCCCEEEEECCCCeEEeEeccC-------------CCceEEEEECCCCCEEEEEcCCC
Q 011457          314 PQVVTGSHDSTIKFWDLRYGKTMLTLTHH-------------KKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      ..++..-.+..|.+.|.++++.+..+...             ..-.+.|+++|++..|...+..=
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w  225 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW  225 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence            55554446789999999999988876421             13568899999888777666543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.89  E-value=3.7e-05  Score=73.28  Aligned_cols=281  Identities=10%  Similarity=0.081  Sum_probs=158.5

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc----ccccCEEEEEEcCCCCEEEEEeCCC
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT----GHIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      .|+.+..  .-...+.+|.|.+.+..+++ +.+|.| +.....++.-..+.    .....+.++.|.+ +. ++.++.++
T Consensus        26 ~W~~~~~--~~~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g   99 (327)
T 2xbg_A           26 PWEAIQL--PTTATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPP   99 (327)
T ss_dssp             CEEEEEC--SCSSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETT
T ss_pred             CceEeec--CCCCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCC
Confidence            4544431  33457999999877777775 466765 33334343322221    1244688999986 44 44455667


Q ss_pred             cEEEEECCCCeeEEEec---ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-ccCCccEEEEEEcCCCCE
Q 011457          240 QVKCWDLEQNKVIRSYH---GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-AGHDNTVCSVFTRPTDPQ  315 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~  315 (485)
                      .|.. ..+.++.-....   .+...+..+.+.+++..++.+ .+|.|.. ..+.++.-... ......+..+.+.+++.+
T Consensus       100 ~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~  176 (327)
T 2xbg_A          100 IMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEY  176 (327)
T ss_dssp             EEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred             eEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence            5544 333343322222   233557888887776655554 5665432 22223332222 244567889999998877


Q ss_pred             EEEEeCCCCEEE-EEC--CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccC---CcccEE
Q 011457          316 VVTGSHDSTIKF-WDL--RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ---QKTIIN  389 (485)
Q Consensus       316 l~s~s~dg~I~i-wd~--~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~i~  389 (485)
                      ++++. +|.+.. .|-  .+.+.+.  ......+..+.+.+++.+++.+..+.+++.+...++.-..+...   ....+.
T Consensus       177 ~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~  253 (327)
T 2xbg_A          177 VAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFL  253 (327)
T ss_dssp             EEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred             EEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence            76664 455444 442  2233332  23455788999999998877665544555533324433322211   223578


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          390 SMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       390 ~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      .+.+.+++.+++++.+|.| ++....|+........     ......+.++.|..++ .+++++.+|.|.-++-
T Consensus       254 ~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~-----~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          254 DLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDV-----KKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGG-----TTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             EEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCcc-----CCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            8888887766666668877 4555666554433211     0112456778887554 5777788998877764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=2.9e-07  Score=83.42  Aligned_cols=191  Identities=10%  Similarity=0.034  Sum_probs=133.6

Q ss_pred             ceEEEEecCCc--ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEccccc-CEEEEEEcCCCCEEEEEeCCCcEE
Q 011457          166 KCYRVISGHLG--WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE-QVRGLAVSSKHTYMFSAGDDKQVK  242 (485)
Q Consensus       166 ~~~~~l~~H~~--~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~V~  242 (485)
                      +.++++ .|..  -...+.|+ ++.++++.+.+|.|+++|+++++.+..+ -... .-..+++..+ ........++.+.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEE
Confidence            455555 4443  35788997 4677777788899999999999988877 2222 1234555433 3333445789999


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc--CC---ccEEEEEEcCCCCEEE
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG--HD---NTVCSVFTRPTDPQVV  317 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~---~~v~~l~~~~~~~~l~  317 (485)
                      +||..+.+.+.++... ..-+.++  ++++.|+.+..++.|.++|..+.+.+..+.-  +.   ..++.+.|. +|...+
T Consensus       120 V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya  195 (268)
T 3nok_A          120 TWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA  195 (268)
T ss_dssp             EEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence            9999999999998743 2223343  5678888887899999999999988877753  22   244667776 665554


Q ss_pred             EEeCCCCEEEEECCCCeEEeEeccC-------------CCceEEEEECCCCCEEEEEcCC
Q 011457          318 TGSHDSTIKFWDLRYGKTMLTLTHH-------------KKSVRAMALHPTEDCFASASAE  364 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~p~~~~l~~~~~~  364 (485)
                      ....+..|.+.|.++++.+..+...             ..-.+.|+++|++..|+..+..
T Consensus       196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            4446889999999999988876532             1356899999987666555543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=2.6e-07  Score=83.76  Aligned_cols=177  Identities=10%  Similarity=0.141  Sum_probs=125.8

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEE--EEEecCCCEEEEEECCCcEEEEECCCCceEE
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYC--LGLHPTIDILLTGGRDSVCRVWDIRTKMQIF  295 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~--l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  295 (485)
                      .....|.|+ ++.+.++.+.+|.|+++|+++++.++.+  -......  +++..+ .+.+..-.++.+.+||..+.+.+.
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEE
Confidence            345788887 4667778888899999999999998887  2233333  444322 344444568899999999999998


Q ss_pred             EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-----CceEEEEECCCCCEEEEEcCC-CEEEE
Q 011457          296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-----KSVRAMALHPTEDCFASASAE-NIKKF  369 (485)
Q Consensus       296 ~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~~l~~~~~~-~i~i~  369 (485)
                      ++... ..-..++  +++..|+.+..++.|.++|..+.+.+..+....     ..++.+.|. +|..++..... .|.+.
T Consensus       131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            88743 2223444  467788887778999999999998887765422     235667777 67666655444 49999


Q ss_pred             ECCCCceeeeeccC------------CcccEEEEEeCCCC--eEEEE
Q 011457          370 NLPKGEFLHNMLSQ------------QKTIINSMAVNEEG--VLATG  402 (485)
Q Consensus       370 d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~--~l~sg  402 (485)
                      |..+++.+..+...            .....+.+++++++  ++++|
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999988776321            23578999999977  44544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.84  E-value=1.1e-06  Score=78.91  Aligned_cols=186  Identities=14%  Similarity=0.127  Sum_probs=127.8

Q ss_pred             eEEEEcccc--cCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEEEecccCCc-eEEEEEecCCCEEE-EEECCCc
Q 011457          209 LKLTLTGHI--EQVRGLAVSSKHTYMFSAGDD--KQVKCWDLEQNKVIRSYHGHLSG-VYCLGLHPTIDILL-TGGRDSV  282 (485)
Q Consensus       209 ~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~d--g~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~-sg~~dg~  282 (485)
                      .+.++. |.  .....+.|+. +.++.+.+.+  ..|+.+|+.+++.++.+...... --.+++.  ++.|+ ..-.++.
T Consensus        11 v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~   86 (243)
T 3mbr_X           11 VVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred             EEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence            444553 43  4577999986 5666666665  48999999999999888633221 1233443  44444 4456889


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCC-----CceEEEEECCCCCE
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-----KSVRAMALHPTEDC  357 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~~  357 (485)
                      +.+||..+.+.+.++..... =..++  +++..|+++..++.|.++|..+.+.+..+....     ..++.+.+. +|..
T Consensus        87 v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l  162 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL  162 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence            99999999999988874332 23444  466777777778899999999998887765422     245566665 6666


Q ss_pred             EEEEc-CCCEEEEECCCCceeeeecc------------CCcccEEEEEeCCCC--eEEEE
Q 011457          358 FASAS-AENIKKFNLPKGEFLHNMLS------------QQKTIINSMAVNEEG--VLATG  402 (485)
Q Consensus       358 l~~~~-~~~i~i~d~~~~~~~~~~~~------------~~~~~i~~~~~~~~~--~l~sg  402 (485)
                      ++... .+.|.+.|..+++.+..+..            ......+.+++++++  ++++|
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            66654 34499999999998877632            123578999999977  44444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.84  E-value=4.6e-06  Score=78.77  Aligned_cols=235  Identities=9%  Similarity=-0.002  Sum_probs=139.8

Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC--cEEE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS--VCRV  285 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg--~i~i  285 (485)
                      +.+..+... .....++|+++++++++-..++.|..||... +....+. ....+..+++.++++++++.....  .|..
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            344445322 5677899999998766766789999999875 3333333 345688999999999666554432  4777


Q ss_pred             EECCCCceEEEecc-CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-EeEec---------cCCCceEEEEECCC
Q 011457          286 WDIRTKMQIFALAG-HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-MLTLT---------HHKKSVRAMALHPT  354 (485)
Q Consensus       286 wd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~---------~~~~~v~~l~~~p~  354 (485)
                      +|..+++....... .......++..+++..+++-..++.|.++|...++. +....         ........+  +++
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d  177 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF  177 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence            78777765432221 122334555555444444444588999999876532 21110         111234455  788


Q ss_pred             CCEEEEEcCC-C-EEEEECCC-Cce--eeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeecc
Q 011457          355 EDCFASASAE-N-IKKFNLPK-GEF--LHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQP  428 (485)
Q Consensus       355 ~~~l~~~~~~-~-i~i~d~~~-~~~--~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~  428 (485)
                      +..+..+... + |..|++.. ++.  ...+..  ......++++++| ++++....+.|.++|.. ++... .....  
T Consensus       178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~--  251 (306)
T 2p4o_A          178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAE--  251 (306)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGG--
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-Eeecc--
Confidence            8766655543 3 99999864 332  111111  1234567888888 54554557899999965 54321 11110  


Q ss_pred             CCCCCCccEEEEEEc---cCCCEEEEEECCC
Q 011457          429 GSLDSEAGIYALSYD---VTGSRLVTCEADK  456 (485)
Q Consensus       429 ~~~~~~~~V~~l~~s---~~g~~L~s~~~Dg  456 (485)
                         ......++++|.   ++++.|+.++..+
T Consensus       252 ---~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          252 ---QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ---GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ---cccCCceEEEEecccCCCCEEEEECCCC
Confidence               112458899998   8888887776544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.79  E-value=3.9e-06  Score=79.80  Aligned_cols=239  Identities=10%  Similarity=0.044  Sum_probs=144.5

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--------------------cCCceEEEEEecCCCEEEEE
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG--------------------HLSGVYCLGLHPTIDILLTG  277 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~--------------------h~~~v~~l~~~~~~~~l~sg  277 (485)
                      ....+++|.+++++++++..++.|..||..+++.. .+..                    ....+..+++.++...|+++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            34567889999988888888999999998765433 2210                    11357899999833446666


Q ss_pred             ECCCcEEEEECCCCceEEEec---c-CCccEEEEEEcC-CCCEEEEEeC-----------------CCCEEEEECCCCeE
Q 011457          278 GRDSVCRVWDIRTKMQIFALA---G-HDNTVCSVFTRP-TDPQVVTGSH-----------------DSTIKFWDLRYGKT  335 (485)
Q Consensus       278 ~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~l~~~~-~~~~l~s~s~-----------------dg~I~iwd~~~~~~  335 (485)
                      ...+.|..+|..++.......   + .......+++.+ ++...++-..                 +|.|..||..+++.
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            555668889877553221111   1 113468899999 8876665432                 36788999877664


Q ss_pred             EeEeccCCCceEEEEECCCCCEEEEE-cC-CCEEEEECCCCc--eeeeeccCCcccEEEEEeCCCC-eEEEEeC------
Q 011457          336 MLTLTHHKKSVRAMALHPTEDCFASA-SA-ENIKKFNLPKGE--FLHNMLSQQKTIINSMAVNEEG-VLATGGD------  404 (485)
Q Consensus       336 ~~~~~~~~~~v~~l~~~p~~~~l~~~-~~-~~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~------  404 (485)
                      ..... .......++++|++..+..+ .. +.|.+|++....  ....+.. ... ...+++.++| ++++...      
T Consensus       178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~~  254 (322)
T 2fp8_A          178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGNM  254 (322)
T ss_dssp             EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred             EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccccc
Confidence            33222 12345679999999865555 33 349999987421  1111111 122 6788999998 3333323      


Q ss_pred             ----CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCC
Q 011457          405 ----NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDET  466 (485)
Q Consensus       405 ----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~  466 (485)
                          .+.|..+|.. ++.+..+..   +... ....++.+++ .++.++++...++.|.++++...
T Consensus       255 ~~~~~~~v~~~d~~-G~~~~~~~~---~~g~-~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          255 HGRVDPKGIKFDEF-GNILEVIPL---PPPF-AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TSCEEEEEEEECTT-SCEEEEEEC---CTTT-TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             cCCCccEEEEECCC-CCEEEEEEC---CCCC-ccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence                4678888864 554443322   1100 0233555666 45666666667889999987643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.77  E-value=2.6e-05  Score=75.03  Aligned_cols=243  Identities=13%  Similarity=0.036  Sum_probs=152.9

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~  253 (485)
                      .+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++.+..|+.+ ...+.|..+++.......
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            3445666666643 444443 35688888876655444443 3557899999766666554 467889999988765444


Q ss_pred             EecccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CC-CCEEEEEC
Q 011457          254 SYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HD-STIKFWDL  330 (485)
Q Consensus       254 ~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~d-g~I~iwd~  330 (485)
                      .+.........+++.+.+. ++++-...+.|.+.++........+...-.....++++|.+..|+... .+ +.|..+++
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            4433334567899997554 445555678899999876544444433445678999998666665544 34 67888887


Q ss_pred             CCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcE
Q 011457          331 RYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSL  408 (485)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I  408 (485)
                      ............-.....|+++|++..|..+....  |..+++.. .....+..........+++..+.++++-...+.|
T Consensus       190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V  268 (349)
T 3v64_C          190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSI  268 (349)
T ss_dssp             TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEETTEEEEEETTTTEE
T ss_pred             CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceEEEEeCCCCCceEEEEECCEEEEecCCCCeE
Confidence            64332222222334578999998777666555443  88898764 3333333333445667777544466666677889


Q ss_pred             EEEeCCCCccccc
Q 011457          409 WFWDWKSGHNFQQ  421 (485)
Q Consensus       409 ~iwd~~~~~~~~~  421 (485)
                      ..++..+|+....
T Consensus       269 ~~~~~~~G~~~~~  281 (349)
T 3v64_C          269 NSANKFTGKNQEI  281 (349)
T ss_dssp             EEEETTTCCSCEE
T ss_pred             EEEEccCCCccEE
Confidence            9888666655433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.77  E-value=4.5e-05  Score=72.31  Aligned_cols=227  Identities=11%  Similarity=0.068  Sum_probs=142.7

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeeEEEecccCCceEE
Q 011457          190 FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQ----NKVIRSYHGHLSGVYC  264 (485)
Q Consensus       190 l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~----~~~~~~~~~h~~~v~~  264 (485)
                      |+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+.+ ..++.|..+++..    ......+.........
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            44443 3568999998877655554 34567899999876555554 4568999999876    2222223323345678


Q ss_pred             EEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC--CCEEEEECCCCeEEeEe-c
Q 011457          265 LGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD--STIKFWDLRYGKTMLTL-T  340 (485)
Q Consensus       265 l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d--g~I~iwd~~~~~~~~~~-~  340 (485)
                      +++.+.+. ++++-...+.|.++|+........+.........++++|.+..|+.+...  +.|..+++.. .....+ .
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~  160 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT  160 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEEC
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEE
Confidence            99987554 44555667899999987554333333334567899999877666655543  6788888763 333332 2


Q ss_pred             cCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457          341 HHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       341 ~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~  416 (485)
                      ..-.....+++++++..|..+....  |..+++.. .....+...  .......+++..+.++++-...+.|..++..+|
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence            2345678999998877666555443  99999863 333333221  223456677755446666667789999998777


Q ss_pred             cccc
Q 011457          417 HNFQ  420 (485)
Q Consensus       417 ~~~~  420 (485)
                      +...
T Consensus       240 ~~~~  243 (316)
T 1ijq_A          240 SDVN  243 (316)
T ss_dssp             CCCE
T ss_pred             cceE
Confidence            6543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.75  E-value=3e-05  Score=73.10  Aligned_cols=235  Identities=10%  Similarity=0.020  Sum_probs=142.3

Q ss_pred             CCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC--Cc
Q 011457          163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--KQ  240 (485)
Q Consensus       163 ~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~  240 (485)
                      .+.+.+..+... .....++|+++++++++-..++.|..||.... ....+. .......+++.++++++++....  ..
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence            445566666433 56789999999997777767899999997653 333333 23568899999999865554332  24


Q ss_pred             EEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCc-eEEEec---------cCCccEEEEEE
Q 011457          241 VKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM-QIFALA---------GHDNTVCSVFT  309 (485)
Q Consensus       241 V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~l~~  309 (485)
                      |..+|..+++...... ........++..+++..+++-..++.|.++|..+++ .+....         ..-.....+  
T Consensus        97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            7777877776543322 112233455555555444444468899999987643 122111         111234455  


Q ss_pred             cCCCCEEEEE-eCCCCEEEEECCC-CeE--EeEeccCCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceee--eecc
Q 011457          310 RPTDPQVVTG-SHDSTIKFWDLRY-GKT--MLTLTHHKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLH--NMLS  382 (485)
Q Consensus       310 ~~~~~~l~s~-s~dg~I~iwd~~~-~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~--~~~~  382 (485)
                      ++++..|+++ +..+.|..||+.. ++.  ...+.. ......+++.++|.++++.... .|.+++.. ++...  .+ .
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~-~  251 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA-E  251 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG-G
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec-c
Confidence            7777766554 4567899999874 321  111111 1345678999999877666544 49999864 65532  22 2


Q ss_pred             CCcccEEEEEeC---CCC-eEEEEeCC
Q 011457          383 QQKTIINSMAVN---EEG-VLATGGDN  405 (485)
Q Consensus       383 ~~~~~i~~~~~~---~~~-~l~sg~~d  405 (485)
                      .......+++|.   +++ .|++.+..
T Consensus       252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          252 QGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cccCCceEEEEecccCCCCEEEEECCC
Confidence            223557888887   665 55555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.71  E-value=2.8e-05  Score=75.96  Aligned_cols=242  Identities=13%  Similarity=0.042  Sum_probs=153.6

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEe
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~  255 (485)
                      .-.|.+..+ ..+|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++........+
T Consensus        78 ~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           78 RRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SSCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred             CCeECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence            344555555 33444443 3578889987766555444 34567899999766555544 46789999998876544444


Q ss_pred             cccCCceEEEEEecCCC-EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-C-CCEEEEECCC
Q 011457          256 HGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-D-STIKFWDLRY  332 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-d-g~I~iwd~~~  332 (485)
                      .........+++.+.+. ++++-...+.|.+.++........+.........+++.|.+..|+.... . +.|..+++..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            33334567789987555 4455555778999998765444444434456789999987766665543 3 6788888764


Q ss_pred             CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE
Q 011457          333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF  410 (485)
Q Consensus       333 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i  410 (485)
                      ................|+++|++..|..+....  |..+++.. .....+..........+++..+.++++-...+.|..
T Consensus       235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~  313 (386)
T 3v65_B          235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINS  313 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEE
T ss_pred             CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEE
Confidence            433333333344578999998776666554443  88888754 333333333344567777754446666677888999


Q ss_pred             EeCCCCcccccc
Q 011457          411 WDWKSGHNFQQA  422 (485)
Q Consensus       411 wd~~~~~~~~~~  422 (485)
                      +|..+|+....+
T Consensus       314 ~~~~~G~~~~~i  325 (386)
T 3v65_B          314 ANKFTGKNQEII  325 (386)
T ss_dssp             EETTTCCSCEEE
T ss_pred             EECCCCcceEEE
Confidence            997677654443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.69  E-value=1.6e-05  Score=72.32  Aligned_cols=200  Identities=12%  Similarity=0.146  Sum_probs=134.5

Q ss_pred             EEecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          170 VISGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      .+.+-.+.+..++|+|+++ ++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3556667899999999766 45557778899999987 887777642 23567889999998877776677889999876


Q ss_pred             CCee---EEEec------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCC---CceEEEec-------cCCccEEEEE
Q 011457          248 QNKV---IRSYH------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---KMQIFALA-------GHDNTVCSVF  308 (485)
Q Consensus       248 ~~~~---~~~~~------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~-------~~~~~v~~l~  308 (485)
                      ....   +....      ..+.....|+|.|.++.|+++.......+|.++.   ...+..+.       .+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5442   22221      2345578999999988777777665555555541   11122221       1234578999


Q ss_pred             EcCCCCE-EEEEeCCCCEEEEECCCCeEEeEeccCC---------CceEEEEECCCCCEEEEEcCCCEEEEEC
Q 011457          309 TRPTDPQ-VVTGSHDSTIKFWDLRYGKTMLTLTHHK---------KSVRAMALHPTEDCFASASAENIKKFNL  371 (485)
Q Consensus       309 ~~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~~~~~~~i~i~d~  371 (485)
                      ++|.... ++....+..|.++|.. ++.+..+....         ..-..|+|.++|++++++-.+-+++|.-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            9996554 4555566778889966 55655543332         2568999999999777754443666653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.69  E-value=1.2e-06  Score=93.55  Aligned_cols=237  Identities=10%  Similarity=0.030  Sum_probs=135.0

Q ss_pred             ceEEEEEc-cCCCEEEEEeC-C----CeEEEEECCCC-ceEE-EEcccccCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 011457          177 WVRSVAFD-HSNTWFCTGSA-D----RTIKIWDVAKG-TLKL-TLTGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKC  243 (485)
Q Consensus       177 ~V~~l~~s-p~~~~l~tgs~-d----g~I~iwd~~~~-~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~i  243 (485)
                      .+...+|| |||++||-+.. +    ..|+++|+.++ +.+. .+.   .....+.|+||++.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 99998885543 2    35999999988 6321 111   113467899999888877665     36888


Q ss_pred             EECCCCee--EEEec-ccCCceEEEEEecCCCEEEEEEC---CCcEEEEECCCCc-eE--EEec-cCCccEEEEEEcCCC
Q 011457          244 WDLEQNKV--IRSYH-GHLSGVYCLGLHPTIDILLTGGR---DSVCRVWDIRTKM-QI--FALA-GHDNTVCSVFTRPTD  313 (485)
Q Consensus       244 wd~~~~~~--~~~~~-~h~~~v~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~-~~--~~~~-~~~~~v~~l~~~~~~  313 (485)
                      +++.++..  ...+. ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+. .......++.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            89877642  22222 22344678899999998877653   3468889998752 22  3333 334455666655444


Q ss_pred             CEEEEEeCC----CCEEEEECCCCeEEeE-eccCCC--ceEEEEECCCCCEEEEEcCCC---EEEEEC-------CCCce
Q 011457          314 PQVVTGSHD----STIKFWDLRYGKTMLT-LTHHKK--SVRAMALHPTEDCFASASAEN---IKKFNL-------PKGEF  376 (485)
Q Consensus       314 ~~l~s~s~d----g~I~iwd~~~~~~~~~-~~~~~~--~v~~l~~~p~~~~l~~~~~~~---i~i~d~-------~~~~~  376 (485)
                      .+++....+    ..|..+|+.++..... +..+..  .+..+.+. .+.++++...++   +.++++       ..++.
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~  410 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG  410 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc
Confidence            344444433    2567777764222222 222222  45556665 233444555554   777786       33331


Q ss_pred             eeeeccCCcccEEEEEe----CCCC--eEEEEeCC---CcEEEEeCCCCc
Q 011457          377 LHNMLSQQKTIINSMAV----NEEG--VLATGGDN---GSLWFWDWKSGH  417 (485)
Q Consensus       377 ~~~~~~~~~~~i~~~~~----~~~~--~l~sg~~d---g~I~iwd~~~~~  417 (485)
                      ...+.......+..+.+    +.++  ++++.++.   +.++.+|+.+++
T Consensus       411 ~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          411 LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            33332122222334432    2344  44444333   568888887765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.68  E-value=5.9e-07  Score=94.49  Aligned_cols=269  Identities=10%  Similarity=0.025  Sum_probs=150.0

Q ss_pred             EEEEcc-CCCEEEEEeCCC-----------eEEEEECCCCceE--EEEc-ccccCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 011457          180 SVAFDH-SNTWFCTGSADR-----------TIKIWDVAKGTLK--LTLT-GHIEQVRGLAVSSKHTYMFSAGD-DKQVKC  243 (485)
Q Consensus       180 ~l~~sp-~~~~l~tgs~dg-----------~I~iwd~~~~~~~--~~~~-~h~~~V~~l~~s~~~~~l~s~~~-dg~V~i  243 (485)
                      ++++.+ ++++++.|+.++           .+.+||..+++..  ..+. .+.....++++..++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888888887643           6889999887532  2222 13333445677889999999884 568999


Q ss_pred             EECCCCeeEEEecccCC-ceEEEEEecCCCEEEEEE-CC-----CcEEEEECCCCceEEEe----ccCCccEEEEEEcCC
Q 011457          244 WDLEQNKVIRSYHGHLS-GVYCLGLHPTIDILLTGG-RD-----SVCRVWDIRTKMQIFAL----AGHDNTVCSVFTRPT  312 (485)
Q Consensus       244 wd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sg~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~  312 (485)
                      ||..+++....-..+.. .-.+++..+++++++.|+ .+     ..+.+||..+.+-...-    ......-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            99988765543221211 123456667899999998 44     56999999876532210    000000000111234


Q ss_pred             CCEEEEEeCCC---------CEEEEECCCCeEEeEeccCC---------CceEEEEEC-CCCCEEEEEcCC---------
Q 011457          313 DPQVVTGSHDS---------TIKFWDLRYGKTMLTLTHHK---------KSVRAMALH-PTEDCFASASAE---------  364 (485)
Q Consensus       313 ~~~l~s~s~dg---------~I~iwd~~~~~~~~~~~~~~---------~~v~~l~~~-p~~~~l~~~~~~---------  364 (485)
                      +..++.|+.+|         .+..||..+...........         ..-.++.+. .++++++.|+.+         
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            44555555444         46788887765433222111         122344443 367777777632         


Q ss_pred             ---CEEEEECCCCceeeee--ccCCcccEEEEEeCCCC-eEEEEeCC-----------CcEEEEeCCCCcccccceeeec
Q 011457          365 ---NIKKFNLPKGEFLHNM--LSQQKTIINSMAVNEEG-VLATGGDN-----------GSLWFWDWKSGHNFQQAQTIVQ  427 (485)
Q Consensus       365 ---~i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~l~sg~~d-----------g~I~iwd~~~~~~~~~~~~~~~  427 (485)
                         .+.+||..+..-....  .......-.++...+++ +++.|+.+           ..+.+||..+.+- ..+.....
T Consensus       430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-~~~~~~~~  508 (656)
T 1k3i_A          430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQNPNSI  508 (656)
T ss_dssp             CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-EECCCCSS
T ss_pred             cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce-eecCCCCC
Confidence               2556776665433221  11111122344555666 77777754           4689999876432 11111111


Q ss_pred             cCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          428 PGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       428 ~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                       ....|    .+..+.++|+.++.||.
T Consensus       509 -~R~~h----s~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          509 -VRVYH----SISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             -CCCTT----EEEEECTTSCEEEEECC
T ss_pred             -ccccc----cHhhcCCCcEEEecCCC
Confidence             11122    23456789999999985

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.66  E-value=0.00011  Score=71.95  Aligned_cols=231  Identities=11%  Similarity=0.063  Sum_probs=149.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----eeEEEecccCCceE
Q 011457          189 WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQN----KVIRSYHGHLSGVY  263 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~----~~~~~~~~h~~~v~  263 (485)
                      +|+... ...|+..++........+. ....+..|+|++.+..|+.+ ...+.|..+++...    .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 4689999988766554444 45678899999866666555 45688999998752    22333333445678


Q ss_pred             EEEEecC-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEec
Q 011457          264 CLGLHPT-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLT  340 (485)
Q Consensus       264 ~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~  340 (485)
                      .+++.+. ++++++-...+.|.+.++........+.........|++.|.+..|+....  .+.|...++..........
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            8999984 445555556789999999866544444434456789999997767666553  3789999887543333333


Q ss_pred             cCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457          341 HHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       341 ~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~  416 (485)
                      ..-.....|++++++..|..+....  |..+++... ....+...  .-.....+++..+.++++-...+.|..+|..+|
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence            3345678999998877776665443  888987543 33333222  223455777755556667777889999997777


Q ss_pred             cccccc
Q 011457          417 HNFQQA  422 (485)
Q Consensus       417 ~~~~~~  422 (485)
                      +....+
T Consensus       322 ~~~~~i  327 (400)
T 3p5b_L          322 SDVNLL  327 (400)
T ss_dssp             CCCEEE
T ss_pred             CceEEE
Confidence            655443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.61  E-value=5e-05  Score=71.99  Aligned_cols=224  Identities=11%  Similarity=0.083  Sum_probs=142.4

Q ss_pred             CCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeE-EEecccCCceEEEEEecCC
Q 011457          196 DRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       196 dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~  271 (485)
                      ...|+..++....  ....+. ....+..++|++.+..|+ +-...+.|..+++..+... ..+.........+++.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4679999987663  222222 234567899998655555 4456788999998766321 1222223456788998754


Q ss_pred             -CEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEeccCCCceEE
Q 011457          272 -DILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLTHHKKSVRA  348 (485)
Q Consensus       272 -~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~v~~  348 (485)
                       +++++-...+.|.++++........+.........+++.|.+..|+....  .+.|..+++............-.....
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  170 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence             45555556789999998765443333344456789999987667666653  578888887643222222233345689


Q ss_pred             EEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 011457          349 MALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQ  421 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~  421 (485)
                      |++++++..|..+....  |..+++.. .....+..........+++..++++++-...+.|..++..+|+....
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEE
Confidence            99999777666555443  88898753 33333333334456677776665667766788999999887765443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=2.6e-05  Score=77.29  Aligned_cols=243  Identities=13%  Similarity=0.102  Sum_probs=139.1

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-C----cEEEEECCCCc
Q 011457          219 QVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD-S----VCRVWDIRTKM  292 (485)
Q Consensus       219 ~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d-g----~i~iwd~~~~~  292 (485)
                      ....|+++| ++..|+++...+.|+.+|+..+....... .......++|+++++.|+++... +    .+.+++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457889998 46667777665889999998766544443 55668899999999966666552 2    34444433221


Q ss_pred             e-EEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCCceEEEEECCCCCEEEEEcCC-C-EE
Q 011457          293 Q-IFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALHPTEDCFASASAE-N-IK  367 (485)
Q Consensus       293 ~-~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~~~~~~-~-i~  367 (485)
                      . ...+. .......++++| ++.++++-..++.|..||...+........ .....+.++|+|++++|..+... + |.
T Consensus       217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1 12222 123456778899 666666666778999999987654222222 22456789999999955555433 3 88


Q ss_pred             EEECCC--Cce--eeeeccC--C------------cccEE-EEEeC--------CCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457          368 KFNLPK--GEF--LHNMLSQ--Q------------KTIIN-SMAVN--------EEG-VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       368 i~d~~~--~~~--~~~~~~~--~------------~~~i~-~~~~~--------~~~-~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      .++...  +..  +..+...  .            -.... .+++.        +++ ++++-..++.|+.++ .+|...
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~  374 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVT  374 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEE
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEE
Confidence            877543  221  1111110  0            01122 45553        345 444444567888888 344322


Q ss_pred             ccceee--eccC-------CCCCCccEEEEEEccC-CCEEEEEECCCcEEEecCC
Q 011457          420 QQAQTI--VQPG-------SLDSEAGIYALSYDVT-GSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       420 ~~~~~~--~~~~-------~~~~~~~V~~l~~s~~-g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .....-  ...+       ....-..-..++++++ |.++++-...+.|+.++++
T Consensus       375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            111100  0000       0001124789999995 5555555556788887754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.58  E-value=0.00019  Score=67.95  Aligned_cols=228  Identities=13%  Similarity=0.046  Sum_probs=137.3

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEE-ECCCcEEEEECCC----CceEEEeccCCccEE
Q 011457          231 YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTG-GRDSVCRVWDIRT----KMQIFALAGHDNTVC  305 (485)
Q Consensus       231 ~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~  305 (485)
                      +|+.+. ...|+..|+.+.+....+. ....+..++|++.++.|+.+ ..++.|..+++..    ......+...-....
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344443 3569999998877665554 34567899999876655554 4568999999876    222222322224557


Q ss_pred             EEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC---CCEEEEECCCCceeeeec
Q 011457          306 SVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA---ENIKKFNLPKGEFLHNML  381 (485)
Q Consensus       306 ~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~---~~i~i~d~~~~~~~~~~~  381 (485)
                      .+++.+.+..| ++-..++.|.++|+........+.........++++|.+..+..+..   ..|..++.. |.....+.
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE
Confidence            88888755545 45566789999998754433333333456789999986664444433   237777764 44333333


Q ss_pred             cCCcccEEEEEeCCCC-eE-EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEE
Q 011457          382 SQQKTIINSMAVNEEG-VL-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK  459 (485)
Q Consensus       382 ~~~~~~i~~~~~~~~~-~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~  459 (485)
                      ...-...+.+++++++ .| ++-...+.|..+|+.... ...+..  ...   .......++++ .+..+++-...+.|.
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~--~~~---~~~~P~giav~-~~~ly~~d~~~~~V~  232 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILE--DEK---RLAHPFSLAVF-EDKVFWTDIINEAIF  232 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEE--CTT---TTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEee--cCC---ccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence            3344567899999765 44 444556799999987432 222211  001   11235667775 355555555678888


Q ss_pred             EecCCCCCC
Q 011457          460 MWREDETAT  468 (485)
Q Consensus       460 iW~~~~~~~  468 (485)
                      .++..++..
T Consensus       233 ~~~~~~g~~  241 (316)
T 1ijq_A          233 SANRLTGSD  241 (316)
T ss_dssp             EEETTTCCC
T ss_pred             EEeCCCCcc
Confidence            888655543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.57  E-value=5e-06  Score=88.77  Aligned_cols=192  Identities=11%  Similarity=0.109  Sum_probs=118.3

Q ss_pred             CEEEEEEc-CCCCEEEEEe-CCC----cEEEEECCCC-eeEEE-ecccCCceEEEEEecCCCEEEEEECC-----CcEEE
Q 011457          219 QVRGLAVS-SKHTYMFSAG-DDK----QVKCWDLEQN-KVIRS-YHGHLSGVYCLGLHPTIDILLTGGRD-----SVCRV  285 (485)
Q Consensus       219 ~V~~l~~s-~~~~~l~s~~-~dg----~V~iwd~~~~-~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~i  285 (485)
                      .+...+|| |||++|+.+. .+|    .|+++|+.++ +.+.. +.   .....+.|+||++.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 9999887543 233    5999999988 63211 11   123468899999887777665     36888


Q ss_pred             EECCCCce--EEEec-cCCccEEEEEEcCCCCEEEEEeC---CCCEEEEECCCCe-EE--eEe-ccCCCceEEEEECCCC
Q 011457          286 WDIRTKMQ--IFALA-GHDNTVCSVFTRPTDPQVVTGSH---DSTIKFWDLRYGK-TM--LTL-THHKKSVRAMALHPTE  355 (485)
Q Consensus       286 wd~~~~~~--~~~~~-~~~~~v~~l~~~~~~~~l~s~s~---dg~I~iwd~~~~~-~~--~~~-~~~~~~v~~l~~~p~~  355 (485)
                      +++.++..  ...+. ........+.|+|++++|+..+.   ...|.++|+.++. ..  ..+ ........++.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            89887642  22322 22345678899999998886653   3458888988752 12  333 2334455666655545


Q ss_pred             CEEEEEcCC-----CEEEEECCCCceeee-eccC-CcccEEEEEeCCCCeEEEEeCCCc--EEEEeC
Q 011457          356 DCFASASAE-----NIKKFNLPKGEFLHN-MLSQ-QKTIINSMAVNEEGVLATGGDNGS--LWFWDW  413 (485)
Q Consensus       356 ~~l~~~~~~-----~i~i~d~~~~~~~~~-~~~~-~~~~i~~~~~~~~~~l~sg~~dg~--I~iwd~  413 (485)
                      .+++....+     .|..+++.++..... +... ....+..+.+..+.++++...+|.  |+++++
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            555555443     277778765322222 2222 233556677765447777777885  555564

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.56  E-value=8.2e-05  Score=67.66  Aligned_cols=200  Identities=10%  Similarity=0.155  Sum_probs=134.6

Q ss_pred             EEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECC
Q 011457          212 TLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR  289 (485)
Q Consensus       212 ~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~  289 (485)
                      .+.+-...+..++|+|++..|+ +...++.|...|.. ++.++.+. +-....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4556667899999999766555 56788999999998 88888874 223567888999888776776677899999887


Q ss_pred             CCceE---EEec------cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECC---CCeEEeEec-------cCCCceEEEE
Q 011457          290 TKMQI---FALA------GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLR---YGKTMLTLT-------HHKKSVRAMA  350 (485)
Q Consensus       290 ~~~~~---~~~~------~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~---~~~~~~~~~-------~~~~~v~~l~  350 (485)
                      ....+   ....      ........++++|.+..|+++.......+|.+.   ....+..+.       .....+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            65432   2221      123456899999999888887776665666553   111112111       1234578999


Q ss_pred             ECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCC--------cccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          351 LHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQ--------KTIINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       351 ~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                      ++|....+...++..  +..+|.. |+.+..+.-..        -.....+++.++|.|+..++-+.++.|.-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            999876555555544  7888854 55544432221        13568899999997777788777777754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=3.8e-05  Score=76.15  Aligned_cols=233  Identities=10%  Similarity=0.087  Sum_probs=137.6

Q ss_pred             ceEEEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC-C----cEEEEECCCCe
Q 011457          177 WVRSVAFDH-SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-K----QVKCWDLEQNK  250 (485)
Q Consensus       177 ~V~~l~~sp-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g----~V~iwd~~~~~  250 (485)
                      ....|+++| ++..|+.+...+.|+.+|+..+....... .......++|++++++|+++... +    .+..++.. +.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            457899998 45556666555889999988766544433 45668899999999977666542 2    34434432 32


Q ss_pred             eE--EEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEE-EeCCCCE
Q 011457          251 VI--RSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVT-GSHDSTI  325 (485)
Q Consensus       251 ~~--~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s-~s~dg~I  325 (485)
                      ..  ..+. .......++++| ++.++++-..++.|..+|...+....... ........++++|++++|+. -...+.|
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            21  2222 123456788999 67666666678899999998765422222 12245678999999995554 4567789


Q ss_pred             EEEECCC--CeE--EeEeccC---------------CCceE-EEEEC--------CCCCEEEEEcCCC-EEEEECCCCce
Q 011457          326 KFWDLRY--GKT--MLTLTHH---------------KKSVR-AMALH--------PTEDCFASASAEN-IKKFNLPKGEF  376 (485)
Q Consensus       326 ~iwd~~~--~~~--~~~~~~~---------------~~~v~-~l~~~--------p~~~~l~~~~~~~-i~i~d~~~~~~  376 (485)
                      ..++...  ++.  +..+.+.               -.... .++..        +++.++++-..++ |+.++ .+|..
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence            9987653  221  1111111               01122 45553        3455555544444 88888 45643


Q ss_pred             eeeecc------C--C--------cccEEEEEeCC-CC-eEEEEeCCCcEEEEeC
Q 011457          377 LHNMLS------Q--Q--------KTIINSMAVNE-EG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       377 ~~~~~~------~--~--------~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~  413 (485)
                      ....-.      +  .        -.....+++++ ++ ++++-..+..|+.++.
T Consensus       374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            322211      0  0        12467888888 46 4444445667777764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.51  E-value=0.00026  Score=68.01  Aligned_cols=205  Identities=11%  Similarity=0.051  Sum_probs=128.3

Q ss_pred             CcceEEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeE
Q 011457          175 LGWVRSVAFDHSNTWFC-TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY-MFSAGDDKQVKCWDLEQNKVI  252 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~~~dg~V~iwd~~~~~~~  252 (485)
                      ...+..++|++.+..|+ +-...+.|..+++........+.........+++.+.+.. .++-...+.|.+.+++.....
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            44578999997655554 4456789999998876544444433345678899875544 455556789999998755433


Q ss_pred             EEecccCCceEEEEEecCCCEEEEEEC-C-CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEE
Q 011457          253 RSYHGHLSGVYCLGLHPTIDILLTGGR-D-SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWD  329 (485)
Q Consensus       253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd  329 (485)
                      ..+.........+++.|.+..|+.... + +.|..+++........+...-.....|++++++..|+.+. ..+.|..+|
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            333334456789999996665555544 4 7888888875433222222334578999998777666554 456799999


Q ss_pred             CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      +........+.........+++. .+.++++-...+ |..++..+|+....+
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            87543333333333455677773 344444433333 777776666655444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.48  E-value=9.5e-05  Score=73.28  Aligned_cols=242  Identities=12%  Similarity=0.052  Sum_probs=139.8

Q ss_pred             CEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 011457          219 QVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-----VCRVWDIRTK  291 (485)
Q Consensus       219 ~V~~l~~s~~--~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~  291 (485)
                      ....++|+|+  +..|+.+...+.|+.+|+.+++...... .......++++++++ |+.+...+     .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4568999984  4456666555899999998777655443 456689999999999 55544422     2333333222


Q ss_pred             ce-EEEeccCCccEEEEEEcC-CCCEEEEEeCCCCEEEEECCCCeEEeEe-cc-CCCceEEEEECCCCCEEEEEcCC-C-
Q 011457          292 MQ-IFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTIKFWDLRYGKTMLTL-TH-HKKSVRAMALHPTEDCFASASAE-N-  365 (485)
Q Consensus       292 ~~-~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~-~~~~v~~l~~~p~~~~l~~~~~~-~-  365 (485)
                      .. ...+. .......+++++ ++.++++-..++.|+.+|..++.....+ .. ....-..++|+|++..|..+... + 
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11 11111 223456678898 6666656556788999999877652222 11 12223469999999955555443 3 


Q ss_pred             EEEEECC--CCcee--eeeccC--------------CcccEEEEEe---------CCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457          366 IKKFNLP--KGEFL--HNMLSQ--------------QKTIINSMAV---------NEEG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       366 i~i~d~~--~~~~~--~~~~~~--------------~~~~i~~~~~---------~~~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                      |..++..  ++...  ..+...              .-.....+++         ..++ ++++-..++.|+.++. +|.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            8887765  23211  111110              1123566888         6777 4555556678999984 443


Q ss_pred             ccccceeee--ccCC-------CCCCccEEEEEEc-cCCCEEEEEECCCcEEEecCC
Q 011457          418 NFQQAQTIV--QPGS-------LDSEAGIYALSYD-VTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       418 ~~~~~~~~~--~~~~-------~~~~~~V~~l~~s-~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      .........  ..+.       ...-..-..++++ ++|.++++=...+.|+.++++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            221111000  0000       0011237789999 667666665567788887764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.48  E-value=0.00019  Score=69.94  Aligned_cols=206  Identities=11%  Similarity=0.069  Sum_probs=130.5

Q ss_pred             CCcceEEEEEccCCCE-EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCee
Q 011457          174 HLGWVRSVAFDHSNTW-FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM-FSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~V~iwd~~~~~~  251 (485)
                      -...+..++|++.+.. +++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.+++....
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            3456789999975554 4455567899999987765544444333455778898755444 4555677899999875543


Q ss_pred             EEEecccCCceEEEEEecCCCEEEEEEC-C-CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEE
Q 011457          252 IRSYHGHLSGVYCLGLHPTIDILLTGGR-D-SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFW  328 (485)
Q Consensus       252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iw  328 (485)
                      ...+.........+++.|.+..|+.... . +.|..+++............-.....|++++++..|+.+. ..+.|..+
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            3334434466789999997666665554 3 6888888875443333333344578999998766665554 45779999


Q ss_pred             ECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      |+........+.........|++. .+.++++....+ |..++..+|+....+
T Consensus       274 d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          274 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             CTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             eCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            987543333333333456677773 344444443333 888886667655554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.47  E-value=0.00061  Score=66.70  Aligned_cols=208  Identities=11%  Similarity=0.025  Sum_probs=131.8

Q ss_pred             cCCcceEEEEEccCCCEEE-EEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 011457          173 GHLGWVRSVAFDHSNTWFC-TGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSSK-HTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~-tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~V~iwd~  246 (485)
                      .....+..|+|++.+..|+ +-..++.|+.+++...    .....+.........+++.+. +++.++-...+.|.+.++
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            4456788999998655554 4445688999998652    233334434566789999984 444455556789999998


Q ss_pred             CCCeeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCC
Q 011457          247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDS  323 (485)
Q Consensus       247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg  323 (485)
                      +.......+.........|++.|.+..|+....  .+.|...++........+...-.....|++++++..|+.+. ..+
T Consensus       189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence            865544444434456889999997666666553  47899999875544333333345778999998777776664 457


Q ss_pred             CEEEEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeeec
Q 011457          324 TIKFWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNML  381 (485)
Q Consensus       324 ~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~~  381 (485)
                      .|..+|+...........  .......+++.. +.++.+.... .|..++..+|+.+..+.
T Consensus       269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            899999865433222222  223455677633 3333343333 38888877777665553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.45  E-value=0.00012  Score=72.48  Aligned_cols=233  Identities=12%  Similarity=0.051  Sum_probs=136.7

Q ss_pred             cceEEEEEccC--CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 011457          176 GWVRSVAFDHS--NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK-----QVKCWDLEQ  248 (485)
Q Consensus       176 ~~V~~l~~sp~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-----~V~iwd~~~  248 (485)
                      .....|+|+|+  +..|+.+...+.|+.+|..+++..... ........++|+++++ |+.+...+     .+...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34578999984  344555544488999999877765443 3456689999999999 55544321     233333222


Q ss_pred             Cee-EEEecccCCceEEEEEec-CCCEEEEEECCCcEEEEECCCCceEEEec--cCCccEEEEEEcCCCCEEEEE-eCCC
Q 011457          249 NKV-IRSYHGHLSGVYCLGLHP-TIDILLTGGRDSVCRVWDIRTKMQIFALA--GHDNTVCSVFTRPTDPQVVTG-SHDS  323 (485)
Q Consensus       249 ~~~-~~~~~~h~~~v~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~-s~dg  323 (485)
                      +.. ...+. .......++++| ++.++++-..++.|+.+|..++.....+.  +....-..++++|++++|+.+ ...+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            211 01121 223456788999 66666666677889999998776533322  112233469999999955554 4567


Q ss_pred             CEEEEECC--CCeE--EeEeccC---------------CCceEEEEE---------CCCCCEEEEEcCCC-EEEEECCCC
Q 011457          324 TIKFWDLR--YGKT--MLTLTHH---------------KKSVRAMAL---------HPTEDCFASASAEN-IKKFNLPKG  374 (485)
Q Consensus       324 ~I~iwd~~--~~~~--~~~~~~~---------------~~~v~~l~~---------~p~~~~l~~~~~~~-i~i~d~~~~  374 (485)
                      .|+.++..  ++..  ...+.+.               -.....+++         .+++.++++-..++ |+.++. +|
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            89998865  2321  1111111               123567888         67777666665554 888874 55


Q ss_pred             ceeeeeccCC-----------------cccEEEEEeC-CCC-eEEEEeCCCcEEEEeC
Q 011457          375 EFLHNMLSQQ-----------------KTIINSMAVN-EEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       375 ~~~~~~~~~~-----------------~~~i~~~~~~-~~~-~l~sg~~dg~I~iwd~  413 (485)
                      ... .+....                 -.....++++ +++ ++++-..++.|+.+++
T Consensus       375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            433 222110                 1235677887 566 3344444567776664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.42  E-value=0.00023  Score=67.27  Aligned_cols=191  Identities=8%  Similarity=0.213  Sum_probs=126.9

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCC----CC---EEEEEe-C--CCcEEEEEC--CCCeeE
Q 011457          185 HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK----HT---YMFSAG-D--DKQVKCWDL--EQNKVI  252 (485)
Q Consensus       185 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~----~~---~l~s~~-~--dg~V~iwd~--~~~~~~  252 (485)
                      |...+++.....+-+.+||+ +|+.+..+..  +.++.+..-|+    ++   ++++.. .  +++|.+|++  .++. +
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence            34455666666788999999 8888888763  56677766652    22   233333 3  589999976  3443 5


Q ss_pred             EEecc------cC-CceEEEEE--ecC-CC-EEEEEECCCcEEEEECC-------CCceEEEeccCCccEEEEEEcCCCC
Q 011457          253 RSYHG------HL-SGVYCLGL--HPT-ID-ILLTGGRDSVCRVWDIR-------TKMQIFALAGHDNTVCSVFTRPTDP  314 (485)
Q Consensus       253 ~~~~~------h~-~~v~~l~~--~~~-~~-~l~sg~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~l~~~~~~~  314 (485)
                      ..+..      .. ..++.+++  ++. +. ++++...+|.+..|++.       +.+.+.++. ..+.+-.+...+...
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYG  192 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCC
Confidence            54421      11 56777887  664 43 68888889999999983       334566665 346788888898888


Q ss_pred             EEEEEeCCCCEEEEECC-----CCeEEeEec--cCCCceEEEEE--CCCCC-EEEEEcCC--CEEEEECC-CCceeeee
Q 011457          315 QVVTGSHDSTIKFWDLR-----YGKTMLTLT--HHKKSVRAMAL--HPTED-CFASASAE--NIKKFNLP-KGEFLHNM  380 (485)
Q Consensus       315 ~l~s~s~dg~I~iwd~~-----~~~~~~~~~--~~~~~v~~l~~--~p~~~-~l~~~~~~--~i~i~d~~-~~~~~~~~  380 (485)
                      .|+++-++.-|..||.+     +++.+..+.  .....+..|++  .+++. +|++++.+  .+.+||.. +.+.+..+
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            99999999777777755     344554442  22246788887  45555 55555533  39999996 66666666

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.38  E-value=0.00072  Score=64.22  Aligned_cols=228  Identities=9%  Similarity=0.009  Sum_probs=133.6

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc---ccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT---GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      ...+.+|.|++ +..++. +.++.|.. ....++.-..+.   .+...+..+.+.+++..++++ .+|.|.. ..+.++.
T Consensus        79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence            44688899986 444444 45665544 223344333322   233557788887777666555 4565432 2222332


Q ss_pred             -EEEecccCCceEEEEEecCCCEEEEEECCCcEE-EEEC--CCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          252 -IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR-VWDI--RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       252 -~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~-iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                       ..........+..+.+.+++.+++.+. +|.+. -+|-  .+.+.+.  ......+..+.+.+++..+ .++.+|.+++
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~  229 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAF  229 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEE
Confidence             222234556789999999887776654 45444 3442  2333332  2345678889998888655 5566788877


Q ss_pred             EECCCCeEEeEecc----CCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEE
Q 011457          328 WDLRYGKTMLTLTH----HKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLAT  401 (485)
Q Consensus       328 wd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~s  401 (485)
                      .+...++.-..+..    ....+.++.+.+++.+++++..+.+ .+....|+.-..+...  ....+..+.+.+++.+++
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~  308 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFI  308 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEE
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEE
Confidence            75333444333321    1235889999998888888776556 4444545443333211  234567777766667778


Q ss_pred             EeCCCcEEEEe
Q 011457          402 GGDNGSLWFWD  412 (485)
Q Consensus       402 g~~dg~I~iwd  412 (485)
                      ++.+|.|.-++
T Consensus       309 ~G~~G~i~~~~  319 (327)
T 2xbg_A          309 LGQKGILLRYV  319 (327)
T ss_dssp             ECSTTEEEEEC
T ss_pred             EcCCceEEEEc
Confidence            88899887765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.36  E-value=0.0008  Score=71.57  Aligned_cols=229  Identities=11%  Similarity=0.064  Sum_probs=144.2

Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCC----eeEEEecccCCceE
Q 011457          189 WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQN----KVIRSYHGHLSGVY  263 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~----~~~~~~~~h~~~v~  263 (485)
                      +|+.. ....|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++...    .....+........
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            34333 34568888887665544444 456678999998655555 4455678999998753    22333333445667


Q ss_pred             EEEEecCCCEEE-EEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEec
Q 011457          264 CLGLHPTIDILL-TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLT  340 (485)
Q Consensus       264 ~l~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~  340 (485)
                      .|++.+.++.|+ +-...+.|.+.++........+.........|++.|.+.+|+....  .+.|...++........+.
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            899998765444 5556789999999865544444334456889999998667666553  2678888887544444444


Q ss_pred             cCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457          341 HHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       341 ~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~  416 (485)
                      ..-.....|++.+.+..|+.+....  |..+++... ....+...  .-.....|++..+.++++-...+.|...|..+|
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence            3445788999998777666665443  888887543 33333222  122345666655545566666788888887777


Q ss_pred             cccc
Q 011457          417 HNFQ  420 (485)
Q Consensus       417 ~~~~  420 (485)
                      +...
T Consensus       634 ~~~~  637 (791)
T 3m0c_C          634 SDVN  637 (791)
T ss_dssp             CCCE
T ss_pred             cceE
Confidence            5443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.31  E-value=0.00048  Score=65.17  Aligned_cols=204  Identities=11%  Similarity=0.049  Sum_probs=126.4

Q ss_pred             cceEEEEEccC-CCEEEEEeCCCeEEEEECCCCce-EEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeE
Q 011457          176 GWVRSVAFDHS-NTWFCTGSADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQNKVI  252 (485)
Q Consensus       176 ~~V~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~~~~  252 (485)
                      ..+.+++|++. +.++++-...+.|..+++..... ...+.........+++.+.+ .+.++-...+.|.+++++.....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            35678999985 44555555678999999876632 12222223456788998754 44455556789999998754333


Q ss_pred             EEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEE
Q 011457          253 RSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWD  329 (485)
Q Consensus       253 ~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd  329 (485)
                      ..+.........+++.|.+..|+....  .+.|...++........+...-.....|++++++..|+.+. ..+.|..+|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            333344566789999997666666653  57888888864433222222334568999999776666554 467899999


Q ss_pred             CCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          330 LRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      +..................+++..+ .++.+-...+ |..++..+|+....+
T Consensus       195 ~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          195 LDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCceEEE
Confidence            8743332222323345567777533 3333433333 888888777655443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.25  E-value=0.0055  Score=63.44  Aligned_cols=201  Identities=11%  Similarity=0.042  Sum_probs=120.7

Q ss_pred             CcceEEEEEccCCCEEEEEe-CCCeEEEEECCCCce-EEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCee
Q 011457          175 LGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTL-KLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~  251 (485)
                      .+....|+|++.+..|+.+. ..+.|..+++..... ...+.........+++.+.+..|+ +-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            44577999998666555444 467899999875532 233443336788999998655454 445678999999875543


Q ss_pred             EEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEE
Q 011457          252 IRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFW  328 (485)
Q Consensus       252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iw  328 (485)
                      ...+.........|++.|.+..|+....  .+.|...++............-.....|++++++..|+.+. ..+.|..+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            3333334456788999998666666554  46777777764433333333345678999998766666554 46789999


Q ss_pred             ECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC--CCEEEEECCCCcee
Q 011457          329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA--ENIKKFNLPKGEFL  377 (485)
Q Consensus       329 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~--~~i~i~d~~~~~~~  377 (485)
                      |+.................+|++..+  .++.+..  +.|...|..+++..
T Consensus       199 ~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          199 NLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             SSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred             cCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCccc
Confidence            98754332222212223346677655  3443332  23888888766543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=0.00077  Score=67.20  Aligned_cols=247  Identities=13%  Similarity=0.064  Sum_probs=142.9

Q ss_pred             CEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCeeEEEecc---cCCceEEEEE-------ecCCCEEEEEECCC-----
Q 011457          219 QVRGLAVSS-KHTYMFSAG-DDKQVKCWDLEQNKVIRSYHG---HLSGVYCLGL-------HPTIDILLTGGRDS-----  281 (485)
Q Consensus       219 ~V~~l~~s~-~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~---h~~~v~~l~~-------~~~~~~l~sg~~dg-----  281 (485)
                      ....|+|+| ++..|+.+. ..+.|++.|++++.+......   .......++|       +++++.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 355555554 346799999988776655432   2235899999       99999777776654     


Q ss_pred             --cEEEEECCC-CceE-----EEeccCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECC-------CCeE----------
Q 011457          282 --VCRVWDIRT-KMQI-----FALAGHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLR-------YGKT----------  335 (485)
Q Consensus       282 --~i~iwd~~~-~~~~-----~~~~~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~-------~~~~----------  335 (485)
                        .|.+++... +...     ..+.. ......++++|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266666433 1211     12221 123456788995 4555566677889999987       4443          


Q ss_pred             -EeE-ec-cCCCceEEEEECCCCCEEEEEcCC-C-EEEEEC--CCCcee--eeeccC--Cc------------ccEE-EE
Q 011457          336 -MLT-LT-HHKKSVRAMALHPTEDCFASASAE-N-IKKFNL--PKGEFL--HNMLSQ--QK------------TIIN-SM  391 (485)
Q Consensus       336 -~~~-~~-~~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~--~~~~~~--~~~~~~--~~------------~~i~-~~  391 (485)
                       ... +. ........|+|+|++..|..+... . |+.++.  ..+...  ..+...  ..            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             111 11 223446799999999965555443 3 887654  333210  111110  00            1233 45


Q ss_pred             EeC-------CCC-eEEEEeCCCcEEEEeCCCCcccccceeeec---------cCC-------CCCCccEEEEEEccC-C
Q 011457          392 AVN-------EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQ---------PGS-------LDSEAGIYALSYDVT-G  446 (485)
Q Consensus       392 ~~~-------~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---------~~~-------~~~~~~V~~l~~s~~-g  446 (485)
                      +..       .++ ++++=..+..|+.++ .+|.. ..+...-.         .+.       ...-..-..++++++ |
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            554       455 555556678899998 45532 22211100         010       001234788999997 7


Q ss_pred             CEEEEEECCCcEEEecCCCCCC
Q 011457          447 SRLVTCEADKTIKMWREDETAT  468 (485)
Q Consensus       447 ~~L~s~~~Dg~I~iW~~~~~~~  468 (485)
                      .++++=.....|+.++++....
T Consensus       457 ~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             EEEEEETTTTEEEEEEECCCC-
T ss_pred             EEEEEeCCCCEEEEEECCCCcc
Confidence            6666666778999999877654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.22  E-value=0.0033  Score=65.16  Aligned_cols=284  Identities=12%  Similarity=0.058  Sum_probs=158.0

Q ss_pred             CcceEEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCee
Q 011457          175 LGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKV  251 (485)
Q Consensus       175 ~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~V~iwd~~~~~~  251 (485)
                      ......|++++.+. ++++-...+.|.+.++........+...-.....|++.|.+.+|+....  .+.|...+++....
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~  162 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  162 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence            35788999998554 5555556789999998754433333344456788999997666665543  46777777764333


Q ss_pred             EEEecccCCceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 011457          252 IRSYHGHLSGVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL  330 (485)
Q Consensus       252 ~~~~~~h~~~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~  330 (485)
                      .............|++.+++..|+.+. ..+.|..+|+..........+.......|++..+ ..+++-..++.|...|.
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence            333333445678999999766665554 4678999998654322222211222345666544 34444445678999988


Q ss_pred             CCCeEEeEeccCC-------------------------CceEEEEE-----------CC-------C--------CCEEE
Q 011457          331 RYGKTMLTLTHHK-------------------------KSVRAMAL-----------HP-------T--------EDCFA  359 (485)
Q Consensus       331 ~~~~~~~~~~~~~-------------------------~~v~~l~~-----------~p-------~--------~~~l~  359 (485)
                      .+++....+....                         +....+++           .|       +        ..+|+
T Consensus       242 ~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll  321 (619)
T 3s94_A          242 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL  321 (619)
T ss_dssp             SSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEE
T ss_pred             CCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEE
Confidence            7765433221100                         00111111           11       1        11344


Q ss_pred             EEcCCCEEEEECCCCceeeeec-cCCcccEEEEEeCCC-CeE-EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCcc
Q 011457          360 SASAENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEE-GVL-ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAG  436 (485)
Q Consensus       360 ~~~~~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  436 (485)
                      .+....|+..++.......... ...-..+..+.+.+. +.| ++-...+.|+.++...........        ..-..
T Consensus       322 ~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--------~~~~~  393 (619)
T 3s94_A          322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--------AQIAH  393 (619)
T ss_dssp             EEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSC
T ss_pred             EEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--------CCCCC
Confidence            4444556666665543211111 112234677888874 444 444457888888876543211111        11234


Q ss_pred             EEEEEEccCCCEE-EEEECCCcEEEecCCCCC
Q 011457          437 IYALSYDVTGSRL-VTCEADKTIKMWREDETA  467 (485)
Q Consensus       437 V~~l~~s~~g~~L-~s~~~Dg~I~iW~~~~~~  467 (485)
                      ...++++..+..| ++-...+.|.+.+++...
T Consensus       394 p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          394 PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence            5678898755544 444456889998887654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.21  E-value=0.0012  Score=70.24  Aligned_cols=207  Identities=12%  Similarity=0.029  Sum_probs=128.4

Q ss_pred             ecCCcceEEEEEccCCC-EEEEEeCCCeEEEEECCCC----ceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 011457          172 SGHLGWVRSVAFDHSNT-WFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWD  245 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~~-~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd  245 (485)
                      ......+..|+|++.+. ++++-...+.|+.+++...    .....+.........|++.+.+..|+ +-...+.|.+.+
T Consensus       420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence            34456778999998544 4555556688999998653    22333443445667899988775555 445678999999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CC
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HD  322 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~d  322 (485)
                      +........+.........|++.|.+..|+....  .+.|...++........+...-.....|++++.+..|+.+. ..
T Consensus       500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            8755443333334556889999998666666553  26899999875544444443345788999998777776664 45


Q ss_pred             CCEEEEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeee
Q 011457          323 STIKFWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       323 g~I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~  380 (485)
                      +.|..+|+........+..  .-....+|++..  ..|+.+... + |...+..+|+.+..+
T Consensus       580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            6799999865433333322  122345666643  344443333 3 777777777655444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.0012  Score=65.71  Aligned_cols=240  Identities=12%  Similarity=0.113  Sum_probs=139.5

Q ss_pred             ceEEEEEccC-C-CEEEEEeCCCeEEEEECCCCceEEEEccc---ccCEEEEEE-------cCCCCEEEEEeCCC-----
Q 011457          177 WVRSVAFDHS-N-TWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRGLAV-------SSKHTYMFSAGDDK-----  239 (485)
Q Consensus       177 ~V~~l~~sp~-~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~V~~l~~-------s~~~~~l~s~~~dg-----  239 (485)
                      ....|+|+|. + +++++-...+.|++.|++++.+...+...   ......++|       ++++.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4568999983 4 44444444578999998887766554432   235899999       99999777766544     


Q ss_pred             --cEEEEECCC-CeeE-----EEecccCCceEEEEEecC-CCEEEEEECCCcEEEEECC-------CCce----------
Q 011457          240 --QVKCWDLEQ-NKVI-----RSYHGHLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIR-------TKMQ----------  293 (485)
Q Consensus       240 --~V~iwd~~~-~~~~-----~~~~~h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~-------~~~~----------  293 (485)
                        .|.+++... +...     +.+... .....++++|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665443 2221     222211 23457788995 5555566678889999997       5543          


Q ss_pred             -EEEe-c-cCCccEEEEEEcCCCCEEEEE-eCCCCEEEEEC--CCCeE--EeEeccC---C------------CceE-EE
Q 011457          294 -IFAL-A-GHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDL--RYGKT--MLTLTHH---K------------KSVR-AM  349 (485)
Q Consensus       294 -~~~~-~-~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~--~~~~~--~~~~~~~---~------------~~v~-~l  349 (485)
                       ...+ . +.......++|+|+++.|+.+ +..+.|+.+|.  ..+..  ...+.+.   .            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             1121 1 223456799999999965544 55678888654  33321  0122111   0            1233 44


Q ss_pred             EEC-------CCCCEEEEEcCCC-EEEEECCCCceeeeeccCC--------------c---------ccEEEEEeCCC-C
Q 011457          350 ALH-------PTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQ--------------K---------TIINSMAVNEE-G  397 (485)
Q Consensus       350 ~~~-------p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~--------------~---------~~i~~~~~~~~-~  397 (485)
                      +..       +++.++++-..+. |+.++ .+|. +..+....              +         .....++++++ +
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            554       4556555555544 88888 5664 33332110              1         23567888886 6


Q ss_pred             -eEEEEeCCCcEEEEeCCCCccc
Q 011457          398 -VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       398 -~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                       ++++=..+..|+.+++......
T Consensus       457 ~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EEEEEETTTTEEEEEEECCCC--
T ss_pred             EEEEEeCCCCEEEEEECCCCccc
Confidence             4444445678888887665443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.20  E-value=7.8e-05  Score=78.27  Aligned_cols=241  Identities=11%  Similarity=0.039  Sum_probs=133.1

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCeeEE--Eec-ccCCceEEEEEecCCCEEEEEEC-CCcEEE
Q 011457          222 GLAVSS-KHTYMFSAGDDK-----------QVKCWDLEQNKVIR--SYH-GHLSGVYCLGLHPTIDILLTGGR-DSVCRV  285 (485)
Q Consensus       222 ~l~~s~-~~~~l~s~~~dg-----------~V~iwd~~~~~~~~--~~~-~h~~~v~~l~~~~~~~~l~sg~~-dg~i~i  285 (485)
                      .+++.+ +++.++.|+.+.           .+.+||+.+++...  .+. .+.....++++..++.++++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 888888887543           58999998876432  221 12333445777889999999985 458999


Q ss_pred             EECCCCceEEEeccCCc-cEEEEEEcCCCCEEEEEe-CC-----CCEEEEECCCCeEEeEe----ccCCCceEEEEECCC
Q 011457          286 WDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGS-HD-----STIKFWDLRYGKTMLTL----THHKKSVRAMALHPT  354 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~s-~d-----g~I~iwd~~~~~~~~~~----~~~~~~v~~l~~~p~  354 (485)
                      ||..+.+-...-..+.. .-.+++..++++.++.|+ .+     ..+.+||..+++-...-    ......-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            99987643222111111 123445567888999988 44     56999999876533220    000000000112233


Q ss_pred             CCEEEEEc----------CCCEEEEECCCCceeeeeccCC--------cccEEEEEeC-CCC-eEEEEeCCC--------
Q 011457          355 EDCFASAS----------AENIKKFNLPKGEFLHNMLSQQ--------KTIINSMAVN-EEG-VLATGGDNG--------  406 (485)
Q Consensus       355 ~~~l~~~~----------~~~i~i~d~~~~~~~~~~~~~~--------~~~i~~~~~~-~~~-~l~sg~~dg--------  406 (485)
                      +..++.++          ...+..||..+...........        ...-.++.+. .++ +++.|+.++        
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            34333332          3347788887765432221110        1122344433 345 777777542        


Q ss_pred             ---cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC-----------CcEEEecCCCCC
Q 011457          407 ---SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD-----------KTIKMWREDETA  467 (485)
Q Consensus       407 ---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D-----------g~I~iW~~~~~~  467 (485)
                         .|.+||..+..-.....     ........-.+++..++|+.++.||.+           ..+.+||..+..
T Consensus       430 ~~~~v~~yd~~~~~W~~~~~-----~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          430 NAHIITLGEPGTSPNTVFAS-----NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CEEEEECCSTTSCCEEEECT-----TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             cceEEEcCCCCCCCeeEEcc-----CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence               57788876654221110     001111112244566899999999865           468889876654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.18  E-value=0.0062  Score=64.90  Aligned_cols=276  Identities=14%  Similarity=0.136  Sum_probs=164.4

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS  254 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~  254 (485)
                      ...|.++....++ .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -+..+|..+++....
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~  136 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF  136 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence            3568888877666 466666655 789998776543211112345777754 344 46666665 588899877654322


Q ss_pred             ec----ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-cc----CCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457          255 YH----GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-AG----HDNTVCSVFTRPTDPQVVTGSHDSTI  325 (485)
Q Consensus       255 ~~----~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~----~~~~v~~l~~~~~~~~l~s~s~dg~I  325 (485)
                      ..    .....|.++....++.+.+ |+.+| |..+|..+++..... ..    ....|.++....++..|.+|+. +-|
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl  213 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL  213 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred             ccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence            11    1234688888877776544 55554 778887766432211 11    1234888888777776666664 458


Q ss_pred             EEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec------cCCcccEEEEEeCCCCeE
Q 011457          326 KFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML------SQQKTIINSMAVNEEGVL  399 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~------~~~~~~i~~~~~~~~~~l  399 (485)
                      ..+|..+++...........|.++....+|.+.+.. .+++.+++..++.......      .-....|.++....+|.|
T Consensus       214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l  292 (758)
T 3ott_A          214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI  292 (758)
T ss_dssp             EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred             eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence            889987765432211223468889888888877765 5679999887765432211      112346889999888877


Q ss_pred             EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      -.|+..| +.++....  .+.......... ......|.++.-+.+|.+.+. +.+| +..++...
T Consensus       293 WiGT~~G-l~~~~~~~--~~~~~~~~~~~~-~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~  352 (758)
T 3ott_A          293 WLGTDYG-ISLSRYNS--ALQFIPISQITG-TGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPA  352 (758)
T ss_dssp             EEEESSS-EEEECCCC---CEEEEHHHHSC-SCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTT
T ss_pred             EEEeCCc-ccccccCC--ceeEEecccCCC-CCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccc
Confidence            7788777 55553321  121111000001 112346899999988876554 4555 55565443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.16  E-value=0.0036  Score=58.62  Aligned_cols=202  Identities=8%  Similarity=0.087  Sum_probs=126.3

Q ss_pred             EcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEE-ecc----cC--CceEEEEE---ecCCCEEEEEE---
Q 011457          213 LTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRS-YHG----HL--SGVYCLGL---HPTIDILLTGG---  278 (485)
Q Consensus       213 ~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~-~~~----h~--~~v~~l~~---~~~~~~l~sg~---  278 (485)
                      +......-.+++|++....|..++ ..++|..||...+..... +.+    ..  ..+..|.|   .|++.++++..   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            333444456789988655555555 789999999986644333 322    11  14689999   58877776544   


Q ss_pred             ----------CCCcEEEEECC---CCceEEEec--c-----------CCccEEEEEEcCCCCEEEEEeCC-CCEEEEECC
Q 011457          279 ----------RDSVCRVWDIR---TKMQIFALA--G-----------HDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLR  331 (485)
Q Consensus       279 ----------~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~  331 (485)
                                .+..|..||+.   +++.+....  .           .......++..++|+..++++.. +.|..++..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      26789999999   777765543  1           11358899999999999999888 888888766


Q ss_pred             CCeEEeEec--c----CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce--eeeec-cC--CcccEEE-EEeCCCC-
Q 011457          332 YGKTMLTLT--H----HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF--LHNML-SQ--QKTIINS-MAVNEEG-  397 (485)
Q Consensus       332 ~~~~~~~~~--~----~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~--~~~~~-~~--~~~~i~~-~~~~~~~-  397 (485)
                      .. .+..+.  .    .....+.|+++|++..|++....+ +..+|+.+...  +..-. ..  .-..... +....+| 
T Consensus       168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence            33 322221  1    122367999999999888776655 99999874322  11100 10  1122333 3333455 


Q ss_pred             e-EEEEeCCCcEEEEeCCC
Q 011457          398 V-LATGGDNGSLWFWDWKS  415 (485)
Q Consensus       398 ~-l~sg~~dg~I~iwd~~~  415 (485)
                      . |++...++.+.+.+...
T Consensus       247 vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEETTEEEEEECSST
T ss_pred             EEEEEcCCCCEEEEECCCC
Confidence            3 55566666666665443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.14  E-value=0.014  Score=62.09  Aligned_cols=281  Identities=13%  Similarity=0.156  Sum_probs=166.1

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~  256 (485)
                      .|.++....++..|..|+. +-+..+|..+++...........|.++....++.+ ..|+.+ -+.+++..+++......
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-WigT~~-Gl~~~~~~~~~~~~~~~  268 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDL-LAGTDN-GLYVYHNDTTPLQHIIH  268 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCE-EEEETT-EEEEECCTTSCCEEECC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCE-EEEeCC-ceeEEecCCCcEEEEEc
Confidence            4888888877765555554 45888998776543322222356888888877765 445554 48888887665432211


Q ss_pred             -------ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-----cCCccEEEEEEcCCCCEEEEEeCCCC
Q 011457          257 -------GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-----GHDNTVCSVFTRPTDPQVVTGSHDST  324 (485)
Q Consensus       257 -------~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~l~s~s~dg~  324 (485)
                             -....|.++....+|+ |..|+..| +.++.....-......     .....|.++....++.+ ..|+.+| 
T Consensus       269 ~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l-WiGt~~G-  344 (758)
T 3ott_A          269 DSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFY-WFGGANG-  344 (758)
T ss_dssp             CTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCE-EEEETTE-
T ss_pred             CCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCE-EEeeCCc-
Confidence                   1224588888877776 55666667 5554432211111111     12346888888777754 4455555 


Q ss_pred             EEEEECCCCe--EEeEec-------cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccC-----CcccEEE
Q 011457          325 IKFWDLRYGK--TMLTLT-------HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQ-----QKTIINS  390 (485)
Q Consensus       325 I~iwd~~~~~--~~~~~~-------~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~~i~~  390 (485)
                      +..++..+++  ....+.       .....|.++.-..++.+.+.. .+++..|+..+++...-....     ....|.+
T Consensus       345 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  423 (758)
T 3ott_A          345 LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYY  423 (758)
T ss_dssp             EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEE
T ss_pred             ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEE
Confidence            6667655432  111221       112458899888888876655 568999999887654322111     2345888


Q ss_pred             EEeCCCCeEEEEeCCCcEEEEeCCCC-----cccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          391 MAVNEEGVLATGGDNGSLWFWDWKSG-----HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       391 ~~~~~~~~l~sg~~dg~I~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      +....++.|..|+..+-|.++|..+.     ..+...........+ ....|.++..+.+|...+.++..+-|..++..+
T Consensus       424 i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~  502 (758)
T 3ott_A          424 IFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL-SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT  502 (758)
T ss_dssp             EEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC-SCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred             EEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc-ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence            88888888888888778888885421     111100010001011 234599999999998776444445577787755


Q ss_pred             C
Q 011457          466 T  466 (485)
Q Consensus       466 ~  466 (485)
                      .
T Consensus       503 ~  503 (758)
T 3ott_A          503 R  503 (758)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.09  E-value=0.0054  Score=63.61  Aligned_cols=227  Identities=7%  Similarity=-0.021  Sum_probs=145.2

Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCceEEEE
Q 011457          189 WFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG  266 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~  266 (485)
                      +|+.+ ..+.|+..++.+......+. .....+..|+|++.+..|+.+ ..++.|..+++........+.........++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            34443 45789999998765443332 123567899999876666654 4678999999876544443433334577899


Q ss_pred             EecCCCEE-EEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEeccCC
Q 011457          267 LHPTIDIL-LTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       267 ~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~  343 (485)
                      +.+.+..| ++-...+.|.+.++........+...-.....|++.|....|+....  .+.|...++..... ..+....
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~  165 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNV  165 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSC
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCC
Confidence            98765545 44455788999998765433333334456789999986666666553  46788888764433 2222344


Q ss_pred             CceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457          344 KSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       344 ~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      .....|++++++..|..+....  |..+++..... ..+ .........+++..+.++++-...+.|...|..+|+..
T Consensus       166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~-~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI-ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-EECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe-eccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCce
Confidence            5678999999877666665543  88888865433 222 22233445777766545555556789999998777543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.07  E-value=0.0012  Score=62.30  Aligned_cols=190  Identities=13%  Similarity=0.241  Sum_probs=123.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecC----CC---EEEEEEC---CCcEEEEECC--CCceEEE
Q 011457          229 HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPT----ID---ILLTGGR---DSVCRVWDIR--TKMQIFA  296 (485)
Q Consensus       229 ~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~---~l~sg~~---dg~i~iwd~~--~~~~~~~  296 (485)
                      ..+++.....+-+.+||+ +|+.++.+..  +.+..+.+-|+    |+   ++++..+   +++|.+|++.  ++ .+..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence            345666667788999999 7898888863  56777777663    22   3344444   4789999773  33 3444


Q ss_pred             ecc------CC-ccEEEEEE--cCC-CC-EEEEEeCCCCEEEEECC-------CCeEEeEeccCCCceEEEEECCCCCEE
Q 011457          297 LAG------HD-NTVCSVFT--RPT-DP-QVVTGSHDSTIKFWDLR-------YGKTMLTLTHHKKSVRAMALHPTEDCF  358 (485)
Q Consensus       297 ~~~------~~-~~v~~l~~--~~~-~~-~l~s~s~dg~I~iwd~~-------~~~~~~~~~~~~~~v~~l~~~p~~~~l  358 (485)
                      +..      .. ..+..+|+  ++. +. ++++...+|.+..|++.       +.+.+.++.. ...+..+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            421      11 45666777  664 43 68888899999999883       3355666654 4578888999888888


Q ss_pred             EEEcCCC-EEEEECC-----CCceeeeec-cCCcccEEEEEe--CCC--CeEEEEe-CCCcEEEEeCC-CCcccccce
Q 011457          359 ASASAEN-IKKFNLP-----KGEFLHNML-SQQKTIINSMAV--NEE--GVLATGG-DNGSLWFWDWK-SGHNFQQAQ  423 (485)
Q Consensus       359 ~~~~~~~-i~i~d~~-----~~~~~~~~~-~~~~~~i~~~~~--~~~--~~l~sg~-~dg~I~iwd~~-~~~~~~~~~  423 (485)
                      +.+..+. |..++..     +++.+..+- ......+..|++  .++  ++|++++ .++++.+||.. +.+.+..+.
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            8887775 7777754     234444331 222235677776  343  3566555 67799999996 555555543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.03  E-value=0.0013  Score=61.60  Aligned_cols=160  Identities=10%  Similarity=0.089  Sum_probs=111.9

Q ss_pred             cCCcceEEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEE-Ecc----c--ccCEEEEEE---cCCCCEEEEEe-----
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTLKLT-LTG----H--IEQVRGLAV---SSKHTYMFSAG-----  236 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~~~~-~~~----h--~~~V~~l~~---s~~~~~l~s~~-----  236 (485)
                      ...-.--+++|++....|..++ ..++|..|+...+..... +.+    .  ...+..|.|   .|+++++++..     
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3334455789988666666665 789999999876644333 221    1  114679999   68877777543     


Q ss_pred             --------CCCcEEEEECC---CCeeEEEec--cc-----------CCceEEEEEecCCCEEEEEECC-CcEEEEECCCC
Q 011457          237 --------DDKQVKCWDLE---QNKVIRSYH--GH-----------LSGVYCLGLHPTIDILLTGGRD-SVCRVWDIRTK  291 (485)
Q Consensus       237 --------~dg~V~iwd~~---~~~~~~~~~--~h-----------~~~v~~l~~~~~~~~l~sg~~d-g~i~iwd~~~~  291 (485)
                              .+..|..||+.   +++.+....  ..           ......++..++|+..++++.. +.|...+....
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                    26789999999   787765543  11           1247899999999999999888 88887777644


Q ss_pred             ceEEEec--c----CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCC
Q 011457          292 MQIFALA--G----HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG  333 (485)
Q Consensus       292 ~~~~~~~--~----~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~  333 (485)
                      . +..+.  .    .....+.|+++|++..|++....|.|..+|+...
T Consensus       170 ~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          170 T-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             C-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             E-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            2 22221  1    1223678999999999998877999999998843

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.03  E-value=0.0044  Score=59.41  Aligned_cols=215  Identities=14%  Similarity=0.149  Sum_probs=115.7

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceE--EEEc---ccccCEEEEEEcCC---CCEEEEEeC-C-----Cc
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK--LTLT---GHIEQVRGLAVSSK---HTYMFSAGD-D-----KQ  240 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~---~h~~~V~~l~~s~~---~~~l~s~~~-d-----g~  240 (485)
                      -..-..++|.|+|+++++ ..+|.|++++  +++..  ..+.   ........|+|+|+   +..|+++.. +     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            445679999999985555 5679999998  44422  1111   12356889999998   555555433 2     67


Q ss_pred             EEEEECCCCe-----e-EEEec---ccCCceEEEEEecCCCEEEEEEC-------------CCcEEEEECCC--------
Q 011457          241 VKCWDLEQNK-----V-IRSYH---GHLSGVYCLGLHPTIDILLTGGR-------------DSVCRVWDIRT--------  290 (485)
Q Consensus       241 V~iwd~~~~~-----~-~~~~~---~h~~~v~~l~~~~~~~~l~sg~~-------------dg~i~iwd~~~--------  290 (485)
                      |..|+...+.     . +..+.   +.......++|.|+|.+.++.+.             .|.|.-+|...        
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            8888876442     1 22232   11122368999999976665432             14566666543        


Q ss_pred             ------CceEEEeccCCccEEEEEEcC-CCCEEEEEeCCCCE------EEEECCCCe------------------EEeEe
Q 011457          291 ------KMQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDSTI------KFWDLRYGK------------------TMLTL  339 (485)
Q Consensus       291 ------~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg~I------~iwd~~~~~------------------~~~~~  339 (485)
                            ...+.. .++ .....++|+| ++.++++-.....+      .+.-+..+.                  ++..+
T Consensus       187 ~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          187 LGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                  111211 123 2356788999 55555443322221      122222221                  12222


Q ss_pred             ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce------eeeeccCCcccEEEEEeCCCC
Q 011457          340 THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF------LHNMLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~------~~~~~~~~~~~i~~~~~~~~~  397 (485)
                      . +......++| .++.++++...++ |..+++.....      ...+. .....+..+++.|+|
T Consensus       265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG  326 (352)
T 2ism_A          265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDG  326 (352)
T ss_dssp             T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTS
T ss_pred             C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCC
Confidence            1 2234566777 4666666555544 77776654321      12222 223467788888887

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.00  E-value=0.02  Score=63.49  Aligned_cols=278  Identities=13%  Similarity=0.150  Sum_probs=156.8

Q ss_pred             CcceEEEEEccC------CCEEEEEeC-CCeEEEEECCCCceEEEEccc-ccCEEEEEEc--CCCCEEEEEeCCCcEEEE
Q 011457          175 LGWVRSVAFDHS------NTWFCTGSA-DRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVS--SKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       175 ~~~V~~l~~sp~------~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s--~~~~~l~s~~~dg~V~iw  244 (485)
                      .+.|.|+++.|.      +++++.|.. |++|+|+++.+.+.+....-. .....++.+.  ....+|+.|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            467999999763      468999996 999999999887766443211 1234444433  244689999999988766


Q ss_pred             ECC--CCeeEEE---ecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEE-EEEcCC--CCEE
Q 011457          245 DLE--QNKVIRS---YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCS-VFTRPT--DPQV  316 (485)
Q Consensus       245 d~~--~~~~~~~---~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~--~~~l  316 (485)
                      .++  +++....   +-| ..++.-..+...+..-+.+..+....+|.-+ ++....-. ....+.. ..|+..  ..-+
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l-~~~~v~~~~~F~se~~~~g~  709 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNV-NLKEVNYMCPLNSDGYPDSL  709 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEB-SSSCCCEEEEECCSSSTTEE
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEecc-ChHHhceEeccCcccCCCcE
Confidence            554  4444321   222 3455544555444433334445555555443 33222211 1122322 233321  1234


Q ss_pred             EEEeCCCCEEEEECCCCe--EEeEeccCCCceEEEEECCCCCEEEEEcCC------------------------------
Q 011457          317 VTGSHDSTIKFWDLRYGK--TMLTLTHHKKSVRAMALHPTEDCFASASAE------------------------------  364 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~------------------------------  364 (485)
                      +. ..++.++|..+....  .+.++. -...++.++++|....++.+..+                              
T Consensus       710 v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1158)
T 3ei3_A          710 AL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK  787 (1158)
T ss_dssp             EE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred             EE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence            43 335669988775432  222332 24567888888877655443211                              


Q ss_pred             --------------------CEEEEECCCCceeeeeccCCcccEEEEE---eCCC--CeEEEEe----------CCCcEE
Q 011457          365 --------------------NIKKFNLPKGEFLHNMLSQQKTIINSMA---VNEE--GVLATGG----------DNGSLW  409 (485)
Q Consensus       365 --------------------~i~i~d~~~~~~~~~~~~~~~~~i~~~~---~~~~--~~l~sg~----------~dg~I~  409 (485)
                                          .++++|-.+.+.+..+.-..+..+.+++   +..+  .++++|+          ..|.|+
T Consensus       788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~  867 (1158)
T 3ei3_A          788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV  867 (1158)
T ss_dssp             CC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred             cccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence                                1566666666666555444455555554   3333  3888887          358999


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      +|++..+ .+..+...      ..++.|++++-- +| +|++|- ...|++|++....
T Consensus       868 vf~v~~~-kL~lv~~~------~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~  915 (1158)
T 3ei3_A          868 VFQYSDG-KLQTVAEK------EVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK  915 (1158)
T ss_dssp             EEEEETT-EEEEEEEE------EESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS
T ss_pred             EEEEECC-EEEEEEEE------EcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc
Confidence            9999743 22222211      235678888743 35 555443 5789999998654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.00  E-value=2e-05  Score=83.11  Aligned_cols=226  Identities=11%  Similarity=0.073  Sum_probs=132.5

Q ss_pred             CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC----CeeEEEecccCCceEEEEEec
Q 011457          195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQ----NKVIRSYHGHLSGVYCLGLHP  269 (485)
Q Consensus       195 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~~  269 (485)
                      ..+.|+..++...+....+.. ...+..|+|++.+..|+.+. ..+.|+.+++..    ......+.........|++.+
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            345788888877665443332 34567899998776666654 567899999875    222222221223345678875


Q ss_pred             C-CCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEeccCCCce
Q 011457          270 T-IDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLTHHKKSV  346 (485)
Q Consensus       270 ~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~v  346 (485)
                      . ++++++-...+.|.++++........+.........|++.|.+.+|+.+..  .+.|..+++........+.......
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P  542 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  542 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence            4 444555456788999998765444333323345677888886665555443  2678888775332222222223446


Q ss_pred             EEEEECCCCCEEEEEcCC-C-EEEEECCCCceeeeeccC--CcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 011457          347 RAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHNMLSQ--QKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQA  422 (485)
Q Consensus       347 ~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~  422 (485)
                      ..|+|+|++..|+.+... . |..+++... ....+...  .......+++..+.++++-...+.|..++..+|+....+
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence            789999876555444433 3 888888543 22333221  112334455555556666667789999998777655444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.99  E-value=0.00049  Score=64.32  Aligned_cols=222  Identities=12%  Similarity=0.162  Sum_probs=113.8

Q ss_pred             CCCEEEEEe-CC-----CeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe--
Q 011457          186 SNTWFCTGS-AD-----RTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQNK--  250 (485)
Q Consensus       186 ~~~~l~tgs-~d-----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~~--  250 (485)
                      ++.+++.|+ .+     ..+.+||..+.+-...  +.........+.  .++.+++.|+.+     ..+.+||+.+++  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            445566666 32     4688999887753321  111111112222  256677777754     469999998766  


Q ss_pred             -eEEE--ecccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCceE--EEeccCCccEEEEEEcCCCCEEEEEe
Q 011457          251 -VIRS--YHGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKMQI--FALAGHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       251 -~~~~--~~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                       ....  +......-.++.+  ++.+++.|+.+     ..+.+||+.+.+-.  ..+.........+.+  ++..++.|+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence             3322  2211111222222  56777777654     35889998765422  222211112222222  566777776


Q ss_pred             CC-----CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC------CCEEEEECCCCceeeeec-cCCcc
Q 011457          321 HD-----STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA------ENIKKFNLPKGEFLHNML-SQQKT  386 (485)
Q Consensus       321 ~d-----g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~~-~~~~~  386 (485)
                      .+     ..+.+||+.+.+-...  +.........+.+  ++.+++.++.      +.+.+||..+.+-...-. .....
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence            54     4588999887653322  2111112222222  5666666654      248999998765432211 11111


Q ss_pred             cEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCC
Q 011457          387 IINSMAVNEEGVLATGGDN-----GSLWFWDWKSG  416 (485)
Q Consensus       387 ~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~  416 (485)
                      ...++.+ .+.+++.|+.+     ..+.+||..+.
T Consensus       246 ~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          246 YVGATVL-RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SCEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             ceeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            2222223 33366666655     35788888764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.90  E-value=0.019  Score=55.38  Aligned_cols=256  Identities=9%  Similarity=0.112  Sum_probs=166.2

Q ss_pred             CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE
Q 011457          196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL  275 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  275 (485)
                      +..|.|.|+.++.....-.-   .--+.-.+|..+.|+.-. ..++.|+|+++...++.+.- ...|.--.|-.+ +.|+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~-~~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEET-TEEE
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCC-CeEE
Confidence            34899999988655432111   112345678887777665 68999999999999988874 455666667655 3455


Q ss_pred             EEECCCcEEEEECCC-CceEEEeccC----CccEEEEEEcCCCCEEEEEeC-------CCCEEEEECCCCeEEeEeccCC
Q 011457          276 TGGRDSVCRVWDIRT-KMQIFALAGH----DNTVCSVFTRPTDPQVVTGSH-------DSTIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       276 sg~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~  343 (485)
                      ..+ +..|+-|++.. ..++..+..|    ...|..-..+++.++++..+-       .|.+.+|..+.+ .-+.+.+|.
T Consensus       121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha  198 (494)
T 1bpo_A          121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA  198 (494)
T ss_dssp             EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSE
T ss_pred             EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeee
Confidence            544 45799999974 3455666544    346777888999998875432       467889988744 445666666


Q ss_pred             CceEEEEECCCC---CEEEEEcC----CCEEEEECCCC---c-----eeeeecc---CCcccEEEEEeCCCC-eEEEEeC
Q 011457          344 KSVRAMALHPTE---DCFASASA----ENIKKFNLPKG---E-----FLHNMLS---QQKTIINSMAVNEEG-VLATGGD  404 (485)
Q Consensus       344 ~~v~~l~~~p~~---~~l~~~~~----~~i~i~d~~~~---~-----~~~~~~~---~~~~~i~~~~~~~~~-~l~sg~~  404 (485)
                      .....+.+..+.   .+|+.+..    ..+.+.++...   .     ....+..   ...+...++.+++.. .+..-+.
T Consensus       199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK  278 (494)
T 1bpo_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  278 (494)
T ss_dssp             EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred             eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence            655544443221   24444433    23888887432   1     1111111   224456667777665 8888999


Q ss_pred             CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          405 NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       405 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      -|.|++||+.++.++..-+-        ....|...+.+....-++.....|.|.--.+++..
T Consensus       279 ~G~i~lyDleTgt~i~~nrI--------s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          279 YGYIHLYDLETGTCIYMNRI--------SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TSEEEEEETTTCCEEEEEEC--------CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             CceEEEEecccceeeeeecc--------cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            99999999999988776542        34456666666666677777788888877776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.90  E-value=0.0013  Score=61.49  Aligned_cols=222  Identities=11%  Similarity=0.152  Sum_probs=111.9

Q ss_pred             CCEEEEEeCC----CeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSAD----RTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGDD-----KQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~d----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~V~iwd~~~~~~~~~~  255 (485)
                      +.+++.|+.+    ..+.+||+.+.+-...  +......-..+.+  ++.+++.|+.+     ..+.+||+.+++....-
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455555543    4688899887753322  1111111112222  56677777654     36889999887644332


Q ss_pred             --cccCCceEEEEEecCCCEEEEEECCC-----cEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCC----
Q 011457          256 --HGHLSGVYCLGLHPTIDILLTGGRDS-----VCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHD----  322 (485)
Q Consensus       256 --~~h~~~v~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~d----  322 (485)
                        ......-..+.  -++.+++.|+.++     .+.+||+.+.+-...  +.........+.+  ++..++.|+.+    
T Consensus        94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred             CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence              11111112222  2567778887654     577888876543221  1111111222222  45566666543    


Q ss_pred             ---CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeec-cCCcccEEE
Q 011457          323 ---STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNML-SQQKTIINS  390 (485)
Q Consensus       323 ---g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~-~~~~~~i~~  390 (485)
                         ..+.+||+.+.+-...  +.........+.+  ++.+++.++.+      .+.+||..+++-...-. ........ 
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-  246 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG-  246 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-
Confidence               3588999887653322  2211112222222  56666666542      48899988765332211 11111122 


Q ss_pred             EEeCCCCeEEEEeCCC-----cEEEEeCCCCc
Q 011457          391 MAVNEEGVLATGGDNG-----SLWFWDWKSGH  417 (485)
Q Consensus       391 ~~~~~~~~l~sg~~dg-----~I~iwd~~~~~  417 (485)
                      +....+.+++.|+.++     .+.+||..+.+
T Consensus       247 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          247 VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            2223333666676553     48999987653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.83  E-value=0.0023  Score=59.88  Aligned_cols=221  Identities=10%  Similarity=0.119  Sum_probs=113.8

Q ss_pred             CEEEEEeC--CCeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeEEEe--cc
Q 011457          188 TWFCTGSA--DRTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGDD----KQVKCWDLEQNKVIRSY--HG  257 (485)
Q Consensus       188 ~~l~tgs~--dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~d----g~V~iwd~~~~~~~~~~--~~  257 (485)
                      .+++.|+.  ...+.+||..+++-...  +......-..+.  -++.+++.|+.+    ..+.+||+.+++....-  ..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555554  35788999887653321  111111112222  256677777754    67899999887654332  11


Q ss_pred             cCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeC--------
Q 011457          258 HLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSH--------  321 (485)
Q Consensus       258 h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~--------  321 (485)
                      ....-..+.+  ++.+++.|+.+      ..+.+||..+.+-...  +.........+.+  ++..++.|+.        
T Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred             cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence            1111122222  56777788765      4688999887643221  1111111222222  5556666653        


Q ss_pred             -CCCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC------CCEEEEECCCCceeeee-ccCCcccEEEE
Q 011457          322 -DSTIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA------ENIKKFNLPKGEFLHNM-LSQQKTIINSM  391 (485)
Q Consensus       322 -dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~-~~~~~~~i~~~  391 (485)
                       -..+.+||+.+.+-...  +......-..+.+  ++.+++.++.      +.+.+||..+++-...- .........++
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  244 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA  244 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence             34588999987643222  1111111222222  5566666553      34889998876533221 11111222333


Q ss_pred             EeCCCCeEEEEeCC-----CcEEEEeCCCCc
Q 011457          392 AVNEEGVLATGGDN-----GSLWFWDWKSGH  417 (485)
Q Consensus       392 ~~~~~~~l~sg~~d-----g~I~iwd~~~~~  417 (485)
                      .+ .+.+++.|+.+     ..+.+||..+.+
T Consensus       245 ~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          245 AV-GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            33 33377777744     468889987753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.82  E-value=0.011  Score=56.70  Aligned_cols=226  Identities=14%  Similarity=0.086  Sum_probs=120.4

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEec---ccCCceEEEEEecC---CCEEEEEEC-C-----Cc
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV--IRSYH---GHLSGVYCLGLHPT---IDILLTGGR-D-----SV  282 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~~---~~~l~sg~~-d-----g~  282 (485)
                      -.....++|.|+|++ +++..+|.|.+++  +++.  +..+.   ........|+|+|+   +..|+++.. +     +.
T Consensus        30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345679999999985 4455679999998  4432  22221   12456889999998   455554433 2     67


Q ss_pred             EEEEECCCCc-----eEEE-ec---cCCccEEEEEEcCCCCEEEEEeC-------------CCCEEEEECCCC-------
Q 011457          283 CRVWDIRTKM-----QIFA-LA---GHDNTVCSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYG-------  333 (485)
Q Consensus       283 i~iwd~~~~~-----~~~~-~~---~~~~~v~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~-------  333 (485)
                      |..|+...+.     .+.. +.   +.......+.|.|+|.+.++.+.             .|.|.-+|....       
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            8888876432     1211 22   11123368999999976665432             145666665420       


Q ss_pred             -----eEEeEeccCCCceEEEEECC-CCCEEEEEcCCC-E------EEEECCCCce------------------eeeecc
Q 011457          334 -----KTMLTLTHHKKSVRAMALHP-TEDCFASASAEN-I------KKFNLPKGEF------------------LHNMLS  382 (485)
Q Consensus       334 -----~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~-i------~i~d~~~~~~------------------~~~~~~  382 (485)
                           .....+.........++|+| ++.++++-.... +      .+.-+..+..                  ...+  
T Consensus       187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~--  264 (352)
T 2ism_A          187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW--  264 (352)
T ss_dssp             TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC--
T ss_pred             cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec--
Confidence                 01111111112356789999 667666543322 1      1332232221                  1111  


Q ss_pred             CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc---ccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457          383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF---QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       383 ~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      ........+++. ++ ++++.-..+.|...++......   .......     .....+..+++.|||.++++..
T Consensus       265 ~~~~ap~G~~~~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 PQGFPPGNLAFF-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTCCCEEEEEEE-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCCcceEEE-CCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECCCCcEEEEEe
Confidence            112234556663 44 4455455567777776543321   1111111     1234689999999998777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.79  E-value=0.024  Score=54.20  Aligned_cols=226  Identities=11%  Similarity=0.085  Sum_probs=124.3

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEec---ccCCceEEEEEecC---CCEEEEEEC----C----C
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK-VIRSYH---GHLSGVYCLGLHPT---IDILLTGGR----D----S  281 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~-~~~~~~---~h~~~v~~l~~~~~---~~~l~sg~~----d----g  281 (485)
                      -.....++|.|+++ |+++..+|.|++++ .+++ .+..+.   ........|+++|+   +..|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            35568999999998 45555679999997 4454 222221   12356889999997   445544433    3    5


Q ss_pred             cEEEEECCCC-------ceEE-Eec-cCCccEEEEEEcCCCCEEEEEeC-------------CCCEEEEECCCC------
Q 011457          282 VCRVWDIRTK-------MQIF-ALA-GHDNTVCSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYG------  333 (485)
Q Consensus       282 ~i~iwd~~~~-------~~~~-~~~-~~~~~v~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~------  333 (485)
                      .|..|+....       +.+. .+. ........+.|.|+|.++++.+.             .|.|.-++....      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777877643       1111 122 11123467899999986666432             245655555421      


Q ss_pred             ---eEEeEeccCCCceEEEEECC-CCCEEEEEcCCC----EEEEECCCCce------------------eeeeccCCccc
Q 011457          334 ---KTMLTLTHHKKSVRAMALHP-TEDCFASASAEN----IKKFNLPKGEF------------------LHNMLSQQKTI  387 (485)
Q Consensus       334 ---~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~~----i~i~d~~~~~~------------------~~~~~~~~~~~  387 (485)
                         ..+.. .++ .....++|+| ++.++++-....    |.+..  .+..                  +..+ ......
T Consensus       186 f~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~~a  260 (354)
T 3a9g_A          186 FPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT-GSETWA  260 (354)
T ss_dssp             STTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCC
T ss_pred             CCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec-CCCCcC
Confidence               01111 122 2356799999 677666544322    33332  2221                  1111 112234


Q ss_pred             EEEEEeC-------CCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457          388 INSMAVN-------EEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       388 i~~~~~~-------~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      ...+.+.       .++ ++++.-..+.|...++...........+..    +....+..+++.|||.++++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~----~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK----NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT----TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc----CCCCCeeEEEECCCCcEEEEEe
Confidence            6677773       355 555555567888888875322211111111    1245689999999998777664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.73  E-value=0.0017  Score=60.61  Aligned_cols=225  Identities=11%  Similarity=0.122  Sum_probs=114.4

Q ss_pred             CCCEEEEEe-CC-----CcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCc--
Q 011457          228 KHTYMFSAG-DD-----KQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKM--  292 (485)
Q Consensus       228 ~~~~l~s~~-~d-----g~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~--  292 (485)
                      ++.+++.|+ .+     ..+.+||+.+++....-  ....... +++ ..++.+++.|+.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            345555665 22     47889999887644321  1111111 222 2356777777765     468999988765  


Q ss_pred             -eEEE--eccCCccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEc
Q 011457          293 -QIFA--LAGHDNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       293 -~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                       -...  +.........+.+  ++..++.|+.++     .+.+||+.+.+-..  .+.........+.+  ++.+++.++
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence             2221  1111112222222  566667776543     58899988765322  22221222222222  566666665


Q ss_pred             C------CCEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCC
Q 011457          363 A------ENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGS  430 (485)
Q Consensus       363 ~------~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~  430 (485)
                      .      +.+.+||..+++-...-. ........++. ..+.+++.|+.+     ..+.+||..+.+-. .+.....+  
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~--  243 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTTP--  243 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSSC--
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCCc--
Confidence            3      238899987765432211 11111122222 233366667654     46899998875422 22111111  


Q ss_pred             CCCCccEEEEEEccCCCEEEEEECC-----CcEEEecCCCCC
Q 011457          431 LDSEAGIYALSYDVTGSRLVTCEAD-----KTIKMWREDETA  467 (485)
Q Consensus       431 ~~~~~~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~~~~  467 (485)
                         ......+.+  +++.++.|+.+     ..|.+||..+..
T Consensus       244 ---r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          244 ---RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             ---CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             ---ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence               111122222  57777778765     357788876654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.71  E-value=0.064  Score=59.54  Aligned_cols=267  Identities=9%  Similarity=0.081  Sum_probs=152.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCC-c-----eEEEE----cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------
Q 011457          186 SNTWFCTGSADRTIKIWDVAKG-T-----LKLTL----TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN------  249 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~-~-----~~~~~----~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~------  249 (485)
                      ++.+++.+..+|.+..-.+... .     .+..+    -+....-.++++-.+| +|+.|+..|.=.+|.+...      
T Consensus       285 ~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~  363 (1158)
T 3ei3_A          285 NGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGS  363 (1158)
T ss_dssp             TSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSC
T ss_pred             CCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccc
Confidence            4566777778888776554321 1     11111    1122233566666554 7899998887777776533      


Q ss_pred             --eeEEEecccCCceEEEEEecCC----CEEEEEEC---CCcEEEEECCCCceE-EEec-cCCccEEEEEEc---CCCCE
Q 011457          250 --KVIRSYHGHLSGVYCLGLHPTI----DILLTGGR---DSVCRVWDIRTKMQI-FALA-GHDNTVCSVFTR---PTDPQ  315 (485)
Q Consensus       250 --~~~~~~~~h~~~v~~l~~~~~~----~~l~sg~~---dg~i~iwd~~~~~~~-~~~~-~~~~~v~~l~~~---~~~~~  315 (485)
                        +.+..+. .-++|.+++.....    ..|++++.   +|.++++.-.-+-.+ ..+. ..-..++.+...   ..+.+
T Consensus       364 ~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~y  442 (1158)
T 3ei3_A          364 YVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDT  442 (1158)
T ss_dssp             CEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCE
T ss_pred             eEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCE
Confidence              3455555 55789888886532    35555543   677887753322111 1111 112344444432   23568


Q ss_pred             EEEEeCCCCEEEEECCCCeEEeEecc--C---CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEE
Q 011457          316 VVTGSHDSTIKFWDLRYGKTMLTLTH--H---KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINS  390 (485)
Q Consensus       316 l~s~s~dg~I~iwd~~~~~~~~~~~~--~---~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~  390 (485)
                      |+.+..+.+ .++.+. ++.+.....  -   ...+.+-.+ . +..++=....+|++++......+..+....+..|..
T Consensus       443 LvlS~~~~T-~Vl~i~-~e~veev~~~gf~~~~~TL~~~~l-~-~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~  518 (1158)
T 3ei3_A          443 LVLSFVGQT-RVLMLN-GEEVEETELMGFVDDQQTFFCGNV-A-HQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISV  518 (1158)
T ss_dssp             EEEEETTEE-EEEEEE-TTEEEEECCTTCCSSSCEEEEEEE-T-TTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCE
T ss_pred             EEEECCCCe-EEEEEe-CCcccccccccccCCCCcEEEEEc-C-CCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEE
Confidence            887777766 555543 223333221  1   111222222 1 335665666778888877666666665555556666


Q ss_pred             EEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccC------CCEEEEEEC-CCcEEEecC
Q 011457          391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT------GSRLVTCEA-DKTIKMWRE  463 (485)
Q Consensus       391 ~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~L~s~~~-Dg~I~iW~~  463 (485)
                      .+.+.. +++.+. ++.+.++++..++. .....      ..-...|.|+++.+.      +++++.|.. |++|+|+++
T Consensus       519 As~n~~-~vvva~-g~~l~~fel~~~~L-~~~~~------~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL  589 (1158)
T 3ei3_A          519 ASCNSS-QVVVAV-GRALYYLQIHPQEL-RQISH------TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL  589 (1158)
T ss_dssp             EEECSS-EEEEEE-TTEEEEEEEETTEE-EEEEE------EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred             EEeCCC-EEEEEE-CCEEEEEEeeCCce-eeecc------cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence            676654 454444 67888888876532 22211      122457999998764      478999996 999999999


Q ss_pred             CCCC
Q 011457          464 DETA  467 (485)
Q Consensus       464 ~~~~  467 (485)
                      ++-.
T Consensus       590 ~~l~  593 (1158)
T 3ei3_A          590 PSFE  593 (1158)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            8644

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.69  E-value=0.008  Score=56.10  Aligned_cols=223  Identities=7%  Similarity=0.082  Sum_probs=114.7

Q ss_pred             CEEEEEeC--CCcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEECC----CcEEEEECCCCceEEE--ecc
Q 011457          230 TYMFSAGD--DKQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGRD----SVCRVWDIRTKMQIFA--LAG  299 (485)
Q Consensus       230 ~~l~s~~~--dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~--~~~  299 (485)
                      .+++.|+.  ...+.+||..+++....-  ......-..+.  -++.+++.|+.+    ..+.+||..+.+-...  +..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555654  357999999887654321  11111112222  256677777765    6788999887643222  111


Q ss_pred             CCccEEEEEEcCCCCEEEEEeCC------CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEc---------
Q 011457          300 HDNTVCSVFTRPTDPQVVTGSHD------STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASAS---------  362 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s~d------g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~---------  362 (485)
                      .......+.+  ++..++.|+.+      ..+.+||..+.+-...  +.........+.+  ++.+++.++         
T Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred             cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence            1112222222  56677777765      4689999987653322  2111112222222  556666654         


Q ss_pred             -CCCEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457          363 -AENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSEA  435 (485)
Q Consensus       363 -~~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  435 (485)
                       .+.+.+||..+.+-...-. ........ +....+.+++.|+.+     ..+.+||..+.+- ..+.....     ...
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~-----~r~  239 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNHG-LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW-KMVSPMPW-----KGV  239 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCEETTEEBCCEEEEETTTTEE-EECCCCSC-----CBS
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcce-EEEECCEEEEEeCCCCCCCCceEEEeeCCCCcE-EECCCCCC-----Ccc
Confidence             3448899988775332211 11111122 222333366666543     4688999887532 22211111     111


Q ss_pred             cEEEEEEccCCCEEEEEECC-----CcEEEecCCCCC
Q 011457          436 GIYALSYDVTGSRLVTCEAD-----KTIKMWREDETA  467 (485)
Q Consensus       436 ~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~~~~  467 (485)
                      ....+.+  ++..++.|+.+     ..|.+||..+..
T Consensus       240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            1222333  57788888854     468888887755

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.66  E-value=0.00011  Score=77.52  Aligned_cols=205  Identities=12%  Similarity=0.035  Sum_probs=118.6

Q ss_pred             cceEEEEEccCCCEEEEE-eCCCeEEEEECCC----CceEEEEcccccCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 011457          176 GWVRSVAFDHSNTWFCTG-SADRTIKIWDVAK----GTLKLTLTGHIEQVRGLAVSSKH-TYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tg-s~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V~iwd~~~~  249 (485)
                      ..+..|+|++.+..|+.. ...+.|+.+++..    ......+.........|++.+.+ .++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            456789999866655555 3457899999875    22222222122334567887544 44444456788999998765


Q ss_pred             eeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE-EEeCCCCEE
Q 011457          250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDSTIK  326 (485)
Q Consensus       250 ~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~I~  326 (485)
                      .....+.........|++.|.+.+|+....  .+.|..+++........+...-.....|++++++..|+ +-+..+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            444333333345678899987665555443  26788888764332222222234567899998765554 444567899


Q ss_pred             EEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcC-CCEEEEECCCCceeeeec
Q 011457          327 FWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASA-ENIKKFNLPKGEFLHNML  381 (485)
Q Consensus       327 iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  381 (485)
                      .+|+........+..  .......|++..+ .++++... +.|..++..+++.+..+.
T Consensus       566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            999864332222221  1123345555544 33333333 349999988887776653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.66  E-value=0.045  Score=52.31  Aligned_cols=226  Identities=12%  Similarity=0.110  Sum_probs=122.9

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc-eEEEEc---ccccCEEEEEEcCC---CCEEEEEeC----C----
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-LKLTLT---GHIEQVRGLAVSSK---HTYMFSAGD----D----  238 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~---~h~~~V~~l~~s~~---~~~l~s~~~----d----  238 (485)
                      --..-..++|.|+|+++++ ..+|.|++++ .+++ .+..+.   ........|+|+|+   +..|+++..    +    
T Consensus        27 ~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            3456789999999985554 5669999997 4554 222211   12356889999997   455554433    3    


Q ss_pred             CcEEEEECCCC-------eeE-EEecc-cCCceEEEEEecCCCEEEEEEC-------------CCcEEEEECCCC-----
Q 011457          239 KQVKCWDLEQN-------KVI-RSYHG-HLSGVYCLGLHPTIDILLTGGR-------------DSVCRVWDIRTK-----  291 (485)
Q Consensus       239 g~V~iwd~~~~-------~~~-~~~~~-h~~~v~~l~~~~~~~~l~sg~~-------------dg~i~iwd~~~~-----  291 (485)
                      +.|..|+....       +.+ ..+.. .......|+|.|+|.++++.+.             .|.|.-++....     
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            56888877654       111 11221 1112467999999986666443             245555555422     


Q ss_pred             ----ceEEEeccCCccEEEEEEcC-CCCEEEEEeCCC---CEEEEECCC--------C--------eEEeEeccCCCceE
Q 011457          292 ----MQIFALAGHDNTVCSVFTRP-TDPQVVTGSHDS---TIKFWDLRY--------G--------KTMLTLTHHKKSVR  347 (485)
Q Consensus       292 ----~~~~~~~~~~~~v~~l~~~~-~~~~l~s~s~dg---~I~iwd~~~--------~--------~~~~~~~~~~~~v~  347 (485)
                          ..+.. .++. ....++|++ ++.++++-....   .|.+...-.        +        .++..+........
T Consensus       185 pf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          185 PFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             SSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence                11222 2333 345788999 555444322221   133332110        0        12222212234577


Q ss_pred             EEEEC-------CCCCEEEEEcCCC-EEEEECCCC-cee--eeeccCCcccEEEEEeCCCCeEEEEe
Q 011457          348 AMALH-------PTEDCFASASAEN-IKKFNLPKG-EFL--HNMLSQQKTIINSMAVNEEGVLATGG  403 (485)
Q Consensus       348 ~l~~~-------p~~~~l~~~~~~~-i~i~d~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~l~sg~  403 (485)
                      .++|.       .+|.++++....+ |..+++... +..  ..+.......+..+++.|+|.|....
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            78883       4666666655554 888887653 322  23333334567888888888443333

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.62  E-value=0.0046  Score=57.65  Aligned_cols=225  Identities=12%  Similarity=0.170  Sum_probs=112.9

Q ss_pred             CCEEEEEeCC----CcEEEEECCCCeeEEE--ecccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCceEEE-
Q 011457          229 HTYMFSAGDD----KQVKCWDLEQNKVIRS--YHGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKMQIFA-  296 (485)
Q Consensus       229 ~~~l~s~~~d----g~V~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~-  296 (485)
                      +.+++.|+.+    ..+.+||+.+++....  +......- +++.. ++.+++.|+.+     ..+.+||..+.+-... 
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3445555543    4688999887764332  11111111 22222 56677777755     3588899877642221 


Q ss_pred             -eccCCccEEEEEEcCCCCEEEEEeCCC-----CEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC-----
Q 011457          297 -LAGHDNTVCSVFTRPTDPQVVTGSHDS-----TIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA-----  363 (485)
Q Consensus       297 -~~~~~~~v~~l~~~~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~-----  363 (485)
                       +.........+.+  ++..++.|+.++     .+.+||+.+.+-...  +.........+.+  ++.+++.++.     
T Consensus        94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred             CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence             1111112222222  566777777654     477889887653322  2111112222222  5566665542     


Q ss_pred             ---CCEEEEECCCCceeeee-ccCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457          364 ---ENIKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSE  434 (485)
Q Consensus       364 ---~~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~  434 (485)
                         +.+.+||..+++-...- ........ ++....+.+++.|+.+     ..+.+||..+.+- ..+.....+ ...+ 
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~-r~~~-  245 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMC-RRNA-  245 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSC-CBSC-
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccc-cEEEECCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCc-cccC-
Confidence               34889998876533221 11111122 2223333366666654     4689999877532 222211111 1111 


Q ss_pred             ccEEEEEEccCCCEEEEEECCC-----cEEEecCCCCCC
Q 011457          435 AGIYALSYDVTGSRLVTCEADK-----TIKMWREDETAT  468 (485)
Q Consensus       435 ~~V~~l~~s~~g~~L~s~~~Dg-----~I~iW~~~~~~~  468 (485)
                         ..+.+  ++..++.|+.++     .|.+||..+..-
T Consensus       246 ---~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          246 ---GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             ---EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             ---eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence               12222  577788887664     488998887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.57  E-value=0.0035  Score=58.72  Aligned_cols=222  Identities=10%  Similarity=0.134  Sum_probs=112.1

Q ss_pred             CCCEEEEEeCC----CeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeC----C-----CcEEEEECCCCe
Q 011457          186 SNTWFCTGSAD----RTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGD----D-----KQVKCWDLEQNK  250 (485)
Q Consensus       186 ~~~~l~tgs~d----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~----d-----g~V~iwd~~~~~  250 (485)
                      ++.+++.|+.+    ..+.+||..+.+-...  +......- +++. -++.+++.|+.    +     ..+.+||+.+++
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45666666632    4688999877654322  11111111 2222 25666666665    2     468899998876


Q ss_pred             eEEEe--cccCCceEEEEEecCCCEEEEEECC-----CcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeC
Q 011457          251 VIRSY--HGHLSGVYCLGLHPTIDILLTGGRD-----SVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       251 ~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      ....-  ......-..+.+  ++.+++.|+.+     ..+.+||+.+.+-...  +......-..+.+  ++.+++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            43322  111111222222  56677777654     3588899876542221  1111112222233  5666777765


Q ss_pred             C-----CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC------CCEEEEECCCCceeeeec-cCCccc
Q 011457          322 D-----STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA------ENIKKFNLPKGEFLHNML-SQQKTI  387 (485)
Q Consensus       322 d-----g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~------~~i~i~d~~~~~~~~~~~-~~~~~~  387 (485)
                      +     ..+.+||+.+.+-...  +.........+.+  ++.+++.++.      +.+.+||+.+.+-...-. ......
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  255 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA  255 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence            4     4588999887643221  1111112222333  5666666654      348999988765432211 111111


Q ss_pred             EEEEEeCCCCeEEEEeCC-----CcEEEEeCCCC
Q 011457          388 INSMAVNEEGVLATGGDN-----GSLWFWDWKSG  416 (485)
Q Consensus       388 i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~  416 (485)
                      .. +....+.+++.|+.+     ..+.+||..+.
T Consensus       256 ~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          256 LG-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CE-EEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eE-EEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            22 222333366666644     35778887764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.53  E-value=0.057  Score=51.41  Aligned_cols=193  Identities=12%  Similarity=0.159  Sum_probs=116.2

Q ss_pred             EEEecCCcceEEEEEccCCCEEEEEe------------CCCeEEEEECCCC--ce-EEEEcc-----cccCEEEEEEcC-
Q 011457          169 RVISGHLGWVRSVAFDHSNTWFCTGS------------ADRTIKIWDVAKG--TL-KLTLTG-----HIEQVRGLAVSS-  227 (485)
Q Consensus       169 ~~l~~H~~~V~~l~~sp~~~~l~tgs------------~dg~I~iwd~~~~--~~-~~~~~~-----h~~~V~~l~~s~-  227 (485)
                      +.+.+-....-.+++.|+|..+++++            .+|.|.++|.++.  +. ...+.+     ..-....+.+.+ 
T Consensus        43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d  122 (355)
T 3sre_A           43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID  122 (355)
T ss_dssp             EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred             EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence            33444333455677788776555542            6899999998742  22 112332     223566777755 


Q ss_pred             -CCC-EEEEEe-C--CCcEEEEECCCC----eeEEEeccc-CCceEEEEEecCCCEEEEEEC-----------------C
Q 011457          228 -KHT-YMFSAG-D--DKQVKCWDLEQN----KVIRSYHGH-LSGVYCLGLHPTIDILLTGGR-----------------D  280 (485)
Q Consensus       228 -~~~-~l~s~~-~--dg~V~iwd~~~~----~~~~~~~~h-~~~v~~l~~~~~~~~l~sg~~-----------------d  280 (485)
                       ++. +|+++. .  +.+|.+|+++.+    ..+..+.+. -...+.+.+.++|.+.++...                 .
T Consensus       123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~  202 (355)
T 3sre_A          123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW  202 (355)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred             CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence             343 455553 2  467888877543    223344332 245789999999987776541                 2


Q ss_pred             CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCC-CeE--EeEeccCCCceEEEEECC-CC
Q 011457          281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRY-GKT--MLTLTHHKKSVRAMALHP-TE  355 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~-~~~--~~~~~~~~~~v~~l~~~p-~~  355 (485)
                      |.|..+|.  ++ +..+...-..-+.++|+|+++.|+++. ..+.|..||+.. +..  ...+ ......-.+++.+ +|
T Consensus       203 g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G  278 (355)
T 3sre_A          203 SFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG  278 (355)
T ss_dssp             EEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred             cEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence            44555554  33 222322334578999999998877665 467899999863 322  2233 2245677899999 59


Q ss_pred             CEEEEEcCCC
Q 011457          356 DCFASASAEN  365 (485)
Q Consensus       356 ~~l~~~~~~~  365 (485)
                      .+.+++..++
T Consensus       279 ~lwva~~~~g  288 (355)
T 3sre_A          279 DLWVGCHPNG  288 (355)
T ss_dssp             CEEEEEESCH
T ss_pred             cEEEEecCCc
Confidence            9888775443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.48  E-value=0.13  Score=53.19  Aligned_cols=202  Identities=9%  Similarity=0.032  Sum_probs=123.7

Q ss_pred             cceEEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEcc------cccCEEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 011457          176 GWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTLKLTLTG------HIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLE  247 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~------h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~  247 (485)
                      ..+.+|+|++.++.|+-.. ..+.|+.+++........+..      ....+..|++...+..|+ +-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            4578899998666555444 467898898764433333332      234688999998766554 55677899999986


Q ss_pred             CCeeEEEe-cccCCceEEEEEecC-CCEEEEEECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-C
Q 011457          248 QNKVIRSY-HGHLSGVYCLGLHPT-IDILLTGGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-D  322 (485)
Q Consensus       248 ~~~~~~~~-~~h~~~v~~l~~~~~-~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-d  322 (485)
                       ++....+ .........|+++|. |.++++-....  .|...++............-.....|++++.+..|+.+.. .
T Consensus       420 -G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~  498 (628)
T 4a0p_A          420 -GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL  498 (628)
T ss_dssp             -SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence             4444443 334567899999995 54444433222  5777777644333333333446789999998777776654 5


Q ss_pred             CCEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          323 STIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       323 g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      +.|..+|+... ....+. .......+|++.. +.++.+-.... |...|..+|+....+
T Consensus       499 ~~I~~~~~dG~-~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          499 RRIESSDLSGA-NRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             TEEEEEETTSC-SCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             CEEEEEeCCCC-ceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            78999998643 333332 2234456777654 33333333333 777777766654443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.48  E-value=0.017  Score=54.20  Aligned_cols=219  Identities=13%  Similarity=0.109  Sum_probs=109.1

Q ss_pred             EEEEEeCCCeEEEEECCCCceEE-EEcccccCEEEEEEcCCCCEEEEEeC----C-------CcEEEEECCCCeeEEEec
Q 011457          189 WFCTGSADRTIKIWDVAKGTLKL-TLTGHIEQVRGLAVSSKHTYMFSAGD----D-------KQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~----d-------g~V~iwd~~~~~~~~~~~  256 (485)
                      +++.|+  ..+.+||..+++-.. .+..............++..++.|+.    +       ..+.+||+.+++....-.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  579999998887543 12111122233333456777777773    1       127889998876533211


Q ss_pred             ccCCce--EEEEEecCCCEEEEEECC--------CcEEEEECCCCceEE--EeccCCccEEEEEEcCCCCEEEEEeC-C-
Q 011457          257 GHLSGV--YCLGLHPTIDILLTGGRD--------SVCRVWDIRTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGSH-D-  322 (485)
Q Consensus       257 ~h~~~v--~~l~~~~~~~~l~sg~~d--------g~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s~-d-  322 (485)
                       ...+-  .+++.. ++.+++.|+.+        ..+.+||..+.+-..  .+.........+.  -++..++.|+. + 
T Consensus        85 -~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  160 (315)
T 4asc_A           85 -LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD  160 (315)
T ss_dssp             -BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred             -CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence             11111  112222 55677777742        458899988764211  1111111122222  25566677765 2 


Q ss_pred             ----CCEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeec-cCCcccEE
Q 011457          323 ----STIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNML-SQQKTIIN  389 (485)
Q Consensus       323 ----g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~-~~~~~~i~  389 (485)
                          ..+.+||+.+.+-..  .+........++.+  ++.+++.++.+      .+.+||..+.+-...-. ........
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  238 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS  238 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence                468999988764322  12111111222222  55666666543      27888887764332211 11111222


Q ss_pred             EEEeCCCCeEEEEeCC--------------CcEEEEeCCCC
Q 011457          390 SMAVNEEGVLATGGDN--------------GSLWFWDWKSG  416 (485)
Q Consensus       390 ~~~~~~~~~l~sg~~d--------------g~I~iwd~~~~  416 (485)
                      .+ ...+.+++.|+.+              ..+.+||..+.
T Consensus       239 ~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          239 LV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            22 2333466666653              24778887765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.45  E-value=0.062  Score=51.29  Aligned_cols=225  Identities=12%  Similarity=0.102  Sum_probs=119.8

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE-------cccccCEEEEEEcCC---CCEEEEEe-C------
Q 011457          175 LGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL-------TGHIEQVRGLAVSSK---HTYMFSAG-D------  237 (485)
Q Consensus       175 ~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~s~~---~~~l~s~~-~------  237 (485)
                      -..-..|+|.|+|++|+++...|.|++++. .+.....+       .........|+|+|+   +.+|+.+. .      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            345689999999993444556799999985 34322111       112345789999996   44455442 2      


Q ss_pred             -CCcEEEEECCCC--e--eEE----Eec---ccCCceEEEEEecCCCEEEEEEC-------------CCcEEEEECCCC-
Q 011457          238 -DKQVKCWDLEQN--K--VIR----SYH---GHLSGVYCLGLHPTIDILLTGGR-------------DSVCRVWDIRTK-  291 (485)
Q Consensus       238 -dg~V~iwd~~~~--~--~~~----~~~---~h~~~v~~l~~~~~~~~l~sg~~-------------dg~i~iwd~~~~-  291 (485)
                       ...|..|++..+  .  ..+    .+.   ........|.|.|+|.++++.+.             .|.|.-+|.... 
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             235666766533  1  111    111   01112357999999965555433             245666666532 


Q ss_pred             -------------ceEEEeccCCccEEEEEEcCCCCEEEEEeCCC--CEEEEECCCCe----------------------
Q 011457          292 -------------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS--TIKFWDLRYGK----------------------  334 (485)
Q Consensus       292 -------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg--~I~iwd~~~~~----------------------  334 (485)
                                   ..+.. .++ .....++|++....|.++....  .=.|.-+..+.                      
T Consensus       176 p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence                         11222 233 3467899999434555443321  11222221111                      


Q ss_pred             ---------EEeEeccCCCceEEEEECC-------CCCEEEEEcCCC-EEEEECCCCceeee--eccCCcccEEEEEeCC
Q 011457          335 ---------TMLTLTHHKKSVRAMALHP-------TEDCFASASAEN-IKKFNLPKGEFLHN--MLSQQKTIINSMAVNE  395 (485)
Q Consensus       335 ---------~~~~~~~~~~~v~~l~~~p-------~~~~l~~~~~~~-i~i~d~~~~~~~~~--~~~~~~~~i~~~~~~~  395 (485)
                               ++..+.. ......+.|..       ++.+|++.-..+ |..+++..++....  ++......+..+++.|
T Consensus       254 ~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             BSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence                     1111211 23466777753       466666665554 77777766543322  2223335688899999


Q ss_pred             CCeEEEEe
Q 011457          396 EGVLATGG  403 (485)
Q Consensus       396 ~~~l~sg~  403 (485)
                      +|.|+..+
T Consensus       333 dG~lyv~t  340 (353)
T 2g8s_A          333 DGYLYVLT  340 (353)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEE
Confidence            99544443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.41  E-value=0.027  Score=52.80  Aligned_cols=219  Identities=12%  Similarity=0.100  Sum_probs=107.0

Q ss_pred             EEEEEeCCCeEEEEECCCCceEEE-EcccccCEEEEEEcCCCCEEEEEeC----CC-------cEEEEECCCCeeEEEe-
Q 011457          189 WFCTGSADRTIKIWDVAKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAGD----DK-------QVKCWDLEQNKVIRSY-  255 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~~----dg-------~V~iwd~~~~~~~~~~-  255 (485)
                      +++.|+.  .+.+||..+++-... +..............++..++.|+.    ++       .+.+||..+++....- 
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444543  488999888765431 2211112222333456777777773    12       1778898877654321 


Q ss_pred             -cccCCceEEEEEecCCCEEEEEECC-------CcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeC----
Q 011457          256 -HGHLSGVYCLGLHPTIDILLTGGRD-------SVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSH----  321 (485)
Q Consensus       256 -~~h~~~v~~l~~~~~~~~l~sg~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~----  321 (485)
                       ......- +++.. ++.+++.|+.+       ..+.+||..+.+-...  +......-..+.  .++..++.|+.    
T Consensus        96 ~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           96 LPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDK  171 (318)
T ss_dssp             BSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSS
T ss_pred             CCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCC
Confidence             1111111 22222 56777778764       3578888876542221  111111111222  35666666654    


Q ss_pred             --CCCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeec-cCCcccEEE
Q 011457          322 --DSTIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNML-SQQKTIINS  390 (485)
Q Consensus       322 --dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~-~~~~~~i~~  390 (485)
                        -..+.+||+.+.+-...  +.........+.+  ++.+++.++.+      .+.+||..+.+-...-. ....... +
T Consensus       172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~  248 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-S  248 (318)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-E
T ss_pred             CccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-E
Confidence              23589999987653222  2111111222222  45666665432      27788987765332211 1111112 2


Q ss_pred             EEeCCCCeEEEEeCC--------------CcEEEEeCCCC
Q 011457          391 MAVNEEGVLATGGDN--------------GSLWFWDWKSG  416 (485)
Q Consensus       391 ~~~~~~~~l~sg~~d--------------g~I~iwd~~~~  416 (485)
                      +....+.+++.|+.+              ..+.+||..+.
T Consensus       249 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            223333366666643              35778887764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.39  E-value=0.057  Score=51.60  Aligned_cols=239  Identities=8%  Similarity=0.059  Sum_probs=123.8

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------cccCCceEEEEEecC---CCEEEEEE-C------
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-------HGHLSGVYCLGLHPT---IDILLTGG-R------  279 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~---~~~l~sg~-~------  279 (485)
                      -.....|+|.|++++|+++...|.|++++.. +.....+       .........|+++|+   +..|+... .      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3456899999999845555678999999853 4322111       112345789999996   44444442 2      


Q ss_pred             -CCcEEEEECCCCc----eEEE-ecc------CCccEEEEEEcCCCCEEEEEeC-------------CCCEEEEECCCCe
Q 011457          280 -DSVCRVWDIRTKM----QIFA-LAG------HDNTVCSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYGK  334 (485)
Q Consensus       280 -dg~i~iwd~~~~~----~~~~-~~~------~~~~v~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~~  334 (485)
                       ...|..|++....    .... +..      ....-..|.|.|++.++++.+.             .|.|.-+|....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             2356666664321    1111 111      1112357999999955555433             2457667764320


Q ss_pred             ------------EEeEeccCCCceEEEEECC-CCCEEEEEcCC--CEEEEECCCCcee----------------------
Q 011457          335 ------------TMLTLTHHKKSVRAMALHP-TEDCFASASAE--NIKKFNLPKGEFL----------------------  377 (485)
Q Consensus       335 ------------~~~~~~~~~~~v~~l~~~p-~~~~l~~~~~~--~i~i~d~~~~~~~----------------------  377 (485)
                                  ....+..-......++|+| ++.++++-...  .=.+.-+..+...                      
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                        1111111123467899999 56665543321  1122222221110                      


Q ss_pred             --eeec-----cCCcccEEEEEeCC-------CC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE
Q 011457          378 --HNML-----SQQKTIINSMAVNE-------EG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY  442 (485)
Q Consensus       378 --~~~~-----~~~~~~i~~~~~~~-------~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  442 (485)
                        ..+.     -.+......+.+..       ++ ++++....+.|...++..+....... ...    .....+..+++
T Consensus       256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~-~~~----~~~~rp~~v~~  330 (353)
T 2g8s_A          256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR-ILT----DRGQRIRDVRT  330 (353)
T ss_dssp             SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE-ESG----GGCCCEEEEEE
T ss_pred             CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE-ccc----CCCCceeEEEE
Confidence              0000     01112355566643       35 55555567788888877543322211 110    12346899999


Q ss_pred             ccCCCEEEEEE-CCCcEEEecC
Q 011457          443 DVTGSRLVTCE-ADKTIKMWRE  463 (485)
Q Consensus       443 s~~g~~L~s~~-~Dg~I~iW~~  463 (485)
                      .|||.++++.. .+|  +||++
T Consensus       331 ~pdG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          331 GPDGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             CTTSCEEEEECSTTE--EEEEE
T ss_pred             CCCCcEEEEEeCCCC--EEEEE
Confidence            99998766543 344  45554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.37  E-value=0.019  Score=55.36  Aligned_cols=143  Identities=14%  Similarity=0.121  Sum_probs=99.2

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceEEEEccc----ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------
Q 011457          184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH----IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK---------  250 (485)
Q Consensus       184 sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~---------  250 (485)
                      ..+|..++.+ .++.||.-++.....-+.+...    -..|..+..+|+|.+|+..+. ..|.|-.+..+.         
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            3456666665 3578999888755444444432    236788999999999999865 589999887331         


Q ss_pred             ---eEEEecc------cCCceEEEEEecC---CCEEEEEECCCcEEEEECCCC--ceEEEec---------cCCccEEEE
Q 011457          251 ---VIRSYHG------HLSGVYCLGLHPT---IDILLTGGRDSVCRVWDIRTK--MQIFALA---------GHDNTVCSV  307 (485)
Q Consensus       251 ---~~~~~~~------h~~~v~~l~~~~~---~~~l~sg~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~~l  307 (485)
                         ..+.+.-      ...+|..+.|||-   +..|++-..|+.|++||+...  ++. .+.         .....|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence               1233332      2467999999995   558999999999999999752  122 222         233578899


Q ss_pred             EEcCCCCEEEEEe--CCCCEEEEE
Q 011457          308 FTRPTDPQVVTGS--HDSTIKFWD  329 (485)
Q Consensus       308 ~~~~~~~~l~s~s--~dg~I~iwd  329 (485)
                      +|..++-.|.+.+  .+|.|+-.-
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEES
T ss_pred             EEcCCCcEEEEEecCCCCCEEEEC
Confidence            9999877777755  778776553

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.30  E-value=0.14  Score=49.46  Aligned_cols=236  Identities=11%  Similarity=0.122  Sum_probs=151.1

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccc
Q 011457          180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGH  258 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h  258 (485)
                      +.-.+|..+.+|.=. ..++.|+|+++...+..+.-. ..|.-=.|-.+. .|+..+ +..|.-|+++.. .+++.+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence            344677777776665 679999999999888887744 456666666444 344443 468999999743 566666544


Q ss_pred             C----CceEEEEEecCCCEEEEEEC-------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCC---CEEEEEeC---
Q 011457          259 L----SGVYCLGLHPTIDILLTGGR-------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD---PQVVTGSH---  321 (485)
Q Consensus       259 ~----~~v~~l~~~~~~~~l~sg~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~s~---  321 (485)
                      .    ..|..-..+++.++++..|-       .|.+.+|..+.+ ..+.+.+|......+.+..+.   ..++.+..   
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence            3    45777777888887664443       477889998754 456677887766655543221   13333333   


Q ss_pred             CCCEEEEECCCC--------eEEeE-ecc---CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE
Q 011457          322 DSTIKFWDLRYG--------KTMLT-LTH---HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       322 dg~I~iwd~~~~--------~~~~~-~~~---~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      .+.++|.++...        +.... +..   ...--.++..++.-..+..-+..+ +++||+.++..+..-....+...
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence            278999988532        11111 111   123355677787777777777766 99999999999887644444443


Q ss_pred             EEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457          389 NSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       389 ~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      ........+-+++....|.|.--.++....+.
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp  336 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEEENIIP  336 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred             EecccCCCCcEEEEccCceEEEEEEccccchh
Confidence            33334444456666688888888777665543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.22  E-value=0.041  Score=51.47  Aligned_cols=221  Identities=10%  Similarity=0.087  Sum_probs=110.1

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEEC----C-------CcEEEEECCCCceEEEec
Q 011457          231 YMFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGR----D-------SVCRVWDIRTKMQIFALA  298 (485)
Q Consensus       231 ~l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~----d-------g~i~iwd~~~~~~~~~~~  298 (485)
                      +++.|+  ..+.+||..+++.... +..............++.+++.|+.    +       ..+.+||..+.+-. .+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECC
Confidence            344555  5799999998875431 1111122233333456778888884    1       12778888776422 221


Q ss_pred             cCC---ccEEEEEEcCCCCEEEEEeCC--------CCEEEEECCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcC--
Q 011457          299 GHD---NTVCSVFTRPTDPQVVTGSHD--------STIKFWDLRYGKTML--TLTHHKKSVRAMALHPTEDCFASASA--  363 (485)
Q Consensus       299 ~~~---~~v~~l~~~~~~~~l~s~s~d--------g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~--  363 (485)
                      ...   .....+.+  ++..++.|+.+        ..+.+||..+.+-..  .+.........+.  -++.+++.++.  
T Consensus        84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~  159 (315)
T 4asc_A           84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGS  159 (315)
T ss_dssp             CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCT
T ss_pred             CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCC
Confidence            111   11122222  45566666632        458999998764322  1211111222222  35566666654  


Q ss_pred             -----CCEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCCC-----cEEEEeCCCCcccccceeeeccCCCC
Q 011457          364 -----ENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDNG-----SLWFWDWKSGHNFQQAQTIVQPGSLD  432 (485)
Q Consensus       364 -----~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~  432 (485)
                           +.+.+||..+.+-...-. ........++ ...+.+++.|+.++     .+.+||..+.+- ..+.....+    
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~----  233 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKW-APFEAFPQE----  233 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEE-EEECCCSSC----
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeE-EECCCCCCc----
Confidence                 238999988764332111 1111112222 23334666666554     588899877532 222111111    


Q ss_pred             CCccEEEEEEccCCCEEEEEECCC--------------cEEEecCCCCC
Q 011457          433 SEAGIYALSYDVTGSRLVTCEADK--------------TIKMWREDETA  467 (485)
Q Consensus       433 ~~~~V~~l~~s~~g~~L~s~~~Dg--------------~I~iW~~~~~~  467 (485)
                       ......+.+  +++.++.||.++              .|.+||..+..
T Consensus       234 -r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          234 -RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             -CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             -ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence             111122223  567777777642              36778877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.20  E-value=0.013  Score=54.68  Aligned_cols=225  Identities=12%  Similarity=0.105  Sum_probs=112.5

Q ss_pred             CCCEEEEEeC----CCcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEEC----C-----CcEEEEECCCCc
Q 011457          228 KHTYMFSAGD----DKQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGR----D-----SVCRVWDIRTKM  292 (485)
Q Consensus       228 ~~~~l~s~~~----dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~----d-----g~i~iwd~~~~~  292 (485)
                      ++.+++.|+.    -..+.+||+.+++....-  ......- +++.. ++.+++.|+.    +     ..+.+||+.+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            4555666653    246889998877654321  1111111 22222 5667777765    2     468889987764


Q ss_pred             eEEE--eccCCccEEEEEEcCCCCEEEEEeCC-----CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC
Q 011457          293 QIFA--LAGHDNTVCSVFTRPTDPQVVTGSHD-----STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       293 ~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~d-----g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                      -...  +.........+.+  ++..++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++.+++.++.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            2211  1111112222333  56666666643     3688999887653221  2211122222333  5666666653


Q ss_pred             C------CEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCC
Q 011457          364 E------NIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSL  431 (485)
Q Consensus       364 ~------~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~  431 (485)
                      +      .+.+||..+.+-...-. ........++.+ .+.+++.|+.+     ..+.+||+.+.+- ..+.....+   
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~---  252 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHR---  252 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSC---
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCC---
Confidence            2      38899987765332211 111112222333 33366667654     5699999887532 222211111   


Q ss_pred             CCCccEEEEEEccCCCEEEEEECC-----CcEEEecCCCCC
Q 011457          432 DSEAGIYALSYDVTGSRLVTCEAD-----KTIKMWREDETA  467 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~~~~  467 (485)
                        ......+.+  +++.++.|+.+     ..|.+||..+..
T Consensus       253 --r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          253 --RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             --CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             --ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence              111122222  56777777754     457788887655

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.0042  Score=58.80  Aligned_cols=190  Identities=9%  Similarity=0.028  Sum_probs=106.6

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEccc-ccCEEEEEEc--CCCCEEEEE--eCCCcEEEEECCCCeeEEEecc----
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGH-IEQVRGLAVS--SKHTYMFSA--GDDKQVKCWDLEQNKVIRSYHG----  257 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s--~~~~~l~s~--~~dg~V~iwd~~~~~~~~~~~~----  257 (485)
                      +..++.++.||.|.-.|..+|+.+.++... ..++....-.  +.+..++.+  +.||.|..++..+|.....+..    
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            347889999999999999999999998754 1222221100  112234443  5899999999988865544421    


Q ss_pred             cCCceEE---EEE-----ecCCCEEEEEECCCcEEEEECCCCceEEEeccCCc--c-----EEEEEEc-----CCCCEEE
Q 011457          258 HLSGVYC---LGL-----HPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN--T-----VCSVFTR-----PTDPQVV  317 (485)
Q Consensus       258 h~~~v~~---l~~-----~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~-----v~~l~~~-----~~~~~l~  317 (485)
                      ..+++..   ..+     ...+..+++|+.+|.+...|+++|+.+..+.....  .     ..|....     ..+..++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence            1122221   000     01456889999999999999999999999863211  0     1111110     1245677


Q ss_pred             EEeCCCCEEEEECCCCeEEeEec-----cCCCc--e-EEEEECCCCCEEEEEcCCCEEEEECCCCceee
Q 011457          318 TGSHDSTIKFWDLRYGKTMLTLT-----HHKKS--V-RAMALHPTEDCFASASAENIKKFNLPKGEFLH  378 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~~~~~~-----~~~~~--v-~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~  378 (485)
                      .+..+..+.+.+ ++|+ +..+.     .....  + ..-..+.++.++++..++.+.-+|..+|..+.
T Consensus       170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred             EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence            777777777766 4453 22211     00000  0 00001123555554444447777777776655

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.17  E-value=0.0084  Score=52.45  Aligned_cols=174  Identities=12%  Similarity=0.014  Sum_probs=99.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCe------eEEEecc-cCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE------
Q 011457          228 KHTYMFSAGDDKQVKCWDLEQNK------VIRSYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI------  294 (485)
Q Consensus       228 ~~~~l~s~~~dg~V~iwd~~~~~------~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~------  294 (485)
                      ...+|+....| +|+.=...++.      ....+-. --..+..++|+|+|.+.++  .+|.+.-.+..+....      
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34556777777 66555544433      1222211 1246779999999886665  7787777666442211      


Q ss_pred             EEec--cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe------Ee-ccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          295 FALA--GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML------TL-THHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       295 ~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~------~~-~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      ..+-  +.. ...++.|.+++.+.++  .||.|+-++--+.....      .+ ...=..+..|.+.|+|.+.++. ++.
T Consensus        80 t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A           80 KKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             EEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred             cEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence            1110  111 1478899999987777  56999888753321110      11 1111467999999999999988 555


Q ss_pred             EEEEECCCCcee-----eeecc-CCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457          366 IKKFNLPKGEFL-----HNMLS-QQKTIINSMAVNEEGVLATGGDNGSLW  409 (485)
Q Consensus       366 i~i~d~~~~~~~-----~~~~~-~~~~~i~~~~~~~~~~l~sg~~dg~I~  409 (485)
                      ++....+.+...     ..... ..-.....+.+.+++.|.... +|.++
T Consensus       156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y  204 (236)
T 1tl2_A          156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFY  204 (236)
T ss_dssp             EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred             EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe-CCeEE
Confidence            655444432210     11111 233345567789998666666 77544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.15  E-value=0.032  Score=53.81  Aligned_cols=150  Identities=11%  Similarity=0.119  Sum_probs=96.7

Q ss_pred             cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccC----CCceEEEEECCCCCEEEEEcCCCEEEEECCCCce---------
Q 011457          310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH----KKSVRAMALHPTEDCFASASAENIKKFNLPKGEF---------  376 (485)
Q Consensus       310 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~---------  376 (485)
                      ..++..++++- ++.||.-++.....-+.+...    ...|..+..+|+|.++|..+..+|.+..++.+..         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            34455555443 467777777644333333332    2367889999999999999999999999984321         


Q ss_pred             ---eeeeccC-----CcccEEEEEeCCCC----eEEEEeCCCcEEEEeCCCCccccc-ceeee-ccCCCCCCccEEEEEE
Q 011457          377 ---LHNMLSQ-----QKTIINSMAVNEEG----VLATGGDNGSLWFWDWKSGHNFQQ-AQTIV-QPGSLDSEAGIYALSY  442 (485)
Q Consensus       377 ---~~~~~~~-----~~~~i~~~~~~~~~----~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~V~~l~~  442 (485)
                         .+.+..+     ....|..+.|+|-+    .|++-..|+.|++||+........ +.... ..+.-.....|.+++|
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence               1111111     24679999999976    799999999999999986322111 11000 0011122367899999


Q ss_pred             ccCCCEEEEEE--CCCcEEE
Q 011457          443 DVTGSRLVTCE--ADKTIKM  460 (485)
Q Consensus       443 s~~g~~L~s~~--~Dg~I~i  460 (485)
                      ..+|-.|....  ..|.|+-
T Consensus       188 g~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEE
Confidence            99887777765  6677653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.14  E-value=0.053  Score=60.13  Aligned_cols=256  Identities=9%  Similarity=0.114  Sum_probs=151.5

Q ss_pred             CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE
Q 011457          196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL  275 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  275 (485)
                      ...|.|.|+.++..+..-   .-.--+.-.+|..+.|+.-. ..++.|+|+++...++.+. ....|.--.|-.+. .|+
T Consensus        47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~-~l~  120 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVA  120 (1630)
T ss_pred             CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC-eeE
Confidence            347889998876544211   11112334577777666654 6899999999988888776 34566666776553 444


Q ss_pred             EEECCCcEEEEECCCC-ceEEEeccC----CccEEEEEEcCCCCEEEEEe-------CCCCEEEEECCCCeEEeEeccCC
Q 011457          276 TGGRDSVCRVWDIRTK-MQIFALAGH----DNTVCSVFTRPTDPQVVTGS-------HDSTIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       276 sg~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~l~~~~~~~~l~s~s-------~dg~I~iwd~~~~~~~~~~~~~~  343 (485)
                      ..+ +..|.-|++... .++..+..|    ...|..-..+++.++++..+       -.|.+.+|....+. -+.+.+|.
T Consensus       121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha  198 (1630)
T 1xi4_A          121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA  198 (1630)
T ss_pred             EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhH
Confidence            443 457999999642 333334333    45677778888888887543       35788999876432 33444444


Q ss_pred             CceEEEEEC---CCCCEEEEEcC----CCEEEEECCCC---cee--e---e-ecc--CCcccEEEEEeCCCC-eEEEEeC
Q 011457          344 KSVRAMALH---PTEDCFASASA----ENIKKFNLPKG---EFL--H---N-MLS--QQKTIINSMAVNEEG-VLATGGD  404 (485)
Q Consensus       344 ~~v~~l~~~---p~~~~l~~~~~----~~i~i~d~~~~---~~~--~---~-~~~--~~~~~i~~~~~~~~~-~l~sg~~  404 (485)
                      .....+...   +....|+.+..    ..+.+.++...   ...  .   . +..  .......++..++.. .+...+.
T Consensus       199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk  278 (1630)
T 1xi4_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  278 (1630)
T ss_pred             hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence            433333321   11223333322    34788777432   111  0   1 111  113345566666655 8888899


Q ss_pred             CCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCC
Q 011457          405 NGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       405 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      -|.|++||+.+|.++..-+.        ....|...+.+....-++.....|.|.--.+++..
T Consensus       279 ~G~~~~~d~~t~~~i~~~ri--------s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          279 YGYIHLYDLETGTCIYMNRI--------SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             CceEEEEecccchhhhhccc--------cCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence            99999999999988765442        23345544544443445555567777666666554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.07  E-value=0.081  Score=50.36  Aligned_cols=172  Identities=13%  Similarity=0.171  Sum_probs=97.7

Q ss_pred             CCCcEEEEECCCC-eeEEEe--cc-----cCCceEEEEEec--CCC-EEEEE-EC--CCcEEEEECCCCce----EEEec
Q 011457          237 DDKQVKCWDLEQN-KVIRSY--HG-----HLSGVYCLGLHP--TID-ILLTG-GR--DSVCRVWDIRTKMQ----IFALA  298 (485)
Q Consensus       237 ~dg~V~iwd~~~~-~~~~~~--~~-----h~~~v~~l~~~~--~~~-~l~sg-~~--dg~i~iwd~~~~~~----~~~~~  298 (485)
                      .+|.|.++|+.+. .....+  .+     ..-....|.+.+  ++. +|+++ ..  +.+|.+|++.....    +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999998732 112222  22     223567788766  344 34444 33  46788888765422    22333


Q ss_pred             cC-CccEEEEEEcCCCCEEEEEeC-----------------CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEE
Q 011457          299 GH-DNTVCSVFTRPTDPQVVTGSH-----------------DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS  360 (485)
Q Consensus       299 ~~-~~~v~~l~~~~~~~~l~s~s~-----------------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~  360 (485)
                      +. -...+.+.+.++|.+.++...                 .|.|..+|.  ++ +..+...-..-+.++|+||++.+..
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence            22 245788999999977766541                 245555554  32 2222222345688999999987776


Q ss_pred             EcCC--CEEEEECCC-Cceee-eeccCCcccEEEEEeCC-CCeE-EEEeCC-CcEEEEe
Q 011457          361 ASAE--NIKKFNLPK-GEFLH-NMLSQQKTIINSMAVNE-EGVL-ATGGDN-GSLWFWD  412 (485)
Q Consensus       361 ~~~~--~i~i~d~~~-~~~~~-~~~~~~~~~i~~~~~~~-~~~l-~sg~~d-g~I~iwd  412 (485)
                      +...  .|..|++.. ++... ... ........+++.. +|.| +++..+ +.|..|+
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence            6543  399999863 33221 112 2246678888998 4744 434433 3444444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.05  E-value=0.22  Score=47.10  Aligned_cols=236  Identities=11%  Similarity=0.111  Sum_probs=129.2

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE--EE----cccccCEEEEEEcCC---CCEEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TL----TGHIEQVRGLAVSSK---HTYMFSA  235 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~--~~----~~h~~~V~~l~~s~~---~~~l~s~  235 (485)
                      -..+.++...-..-+.|+|.|+|.+|++--..|.|++++..+++...  .+    .........|+|+|+   +.+|+..
T Consensus        21 ~~~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           21 VKVLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             EEEEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             CceeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            34455555556778899999999977776558999999876555422  12    123466889999995   3444443


Q ss_pred             ---eCCCcEEEEECCCC----------eeE-EEec-ccCCceEEEEEecCCCEEEEEEC-------------CCcEEEEE
Q 011457          236 ---GDDKQVKCWDLEQN----------KVI-RSYH-GHLSGVYCLGLHPTIDILLTGGR-------------DSVCRVWD  287 (485)
Q Consensus       236 ---~~dg~V~iwd~~~~----------~~~-~~~~-~h~~~v~~l~~~~~~~~l~sg~~-------------dg~i~iwd  287 (485)
                         ..++.|.-|.+..+          +.+ ..+. .....-..|.|.|||.+.++.+.             .|.|.-.+
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence               24556666766541          111 2221 11123457999999987777543             34454445


Q ss_pred             CCCC---------ceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCCCe------------------EEeEe
Q 011457          288 IRTK---------MQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRYGK------------------TMLTL  339 (485)
Q Consensus       288 ~~~~---------~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~~~------------------~~~~~  339 (485)
                      ....         ..+.. .+|. ....++|+|++.+.++= +.|+.=.|.-+..+.                  ++..+
T Consensus       181 ~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~  258 (347)
T 3das_A          181 PDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW  258 (347)
T ss_dssp             TTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred             CCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence            4322         11222 2443 34578899987655432 122222222222221                  12222


Q ss_pred             ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCce---eeeeccCCcccEEEEEeCCCCeEEEEe
Q 011457          340 THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEF---LHNMLSQQKTIINSMAVNEEGVLATGG  403 (485)
Q Consensus       340 ~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~l~sg~  403 (485)
                      ..+......++|. ++.+|...-... |..+.+..+..   ...++......+..+...|+|.|....
T Consensus       259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          259 STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence            2222345667776 355555554443 76666654432   123344445678888888888444333

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.0095  Score=56.33  Aligned_cols=189  Identities=13%  Similarity=0.051  Sum_probs=105.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEeccc-CCceEEEEEe--cCCCEEEEE--ECCCcEEEEECCCCceEEEecc----C
Q 011457          230 TYMFSAGDDKQVKCWDLEQNKVIRSYHGH-LSGVYCLGLH--PTIDILLTG--GRDSVCRVWDIRTKMQIFALAG----H  300 (485)
Q Consensus       230 ~~l~s~~~dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~--~~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~----~  300 (485)
                      ..++.++.||.|.-+|.++|+...+++.. ..++....-.  +.+..++.+  +.||.|..+|..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46889999999999999999999998744 1222221100  112234444  5899999999988865554431    1


Q ss_pred             CccEEE---EEE-----cCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCC--c-----eEEEEEC-----CCCCEEEE
Q 011457          301 DNTVCS---VFT-----RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK--S-----VRAMALH-----PTEDCFAS  360 (485)
Q Consensus       301 ~~~v~~---l~~-----~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--~-----v~~l~~~-----p~~~~l~~  360 (485)
                      ..++..   ..+     ...+..+++|+.+|.+...|+++|+.+..+.....  .     ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            122221   000     01456889999999999999999999998864321  0     0011110     11234444


Q ss_pred             EcCCC-EEEEECCCCceeeeecc----CC--cc-cEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457          361 ASAEN-IKKFNLPKGEFLHNMLS----QQ--KT-IINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       361 ~~~~~-i~i~d~~~~~~~~~~~~----~~--~~-~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      +..+. +.+.+ ++|+ ...+..    ..  .. .......+.++.++.++.||.|.-+|..+|....
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence            44433 44444 4443 222100    00  00 0000001234544668889999999988887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.02  E-value=0.047  Score=54.37  Aligned_cols=223  Identities=12%  Similarity=0.125  Sum_probs=132.1

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEccc-------------------------ccCEE--EEEEc---CCCCEEEEEe-CC
Q 011457          190 FCTGSADRTIKIWDVAKGTLKLTLTGH-------------------------IEQVR--GLAVS---SKHTYMFSAG-DD  238 (485)
Q Consensus       190 l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------------------~~~V~--~l~~s---~~~~~l~s~~-~d  238 (485)
                      |.+|+..|.|+|+-+.+++.+..+.-.                         .+...  .+.+.   .||+||+.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            678888999999999998887766210                         01111  23332   2678888876 56


Q ss_pred             CcEEEEECCCCeeEEEec-ccCCceEEEEEe--cCCCEEEEEEC-------CCcE------------EEEECCCCceEEE
Q 011457          239 KQVKCWDLEQNKVIRSYH-GHLSGVYCLGLH--PTIDILLTGGR-------DSVC------------RVWDIRTKMQIFA  296 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~sg~~-------dg~i------------~iwd~~~~~~~~~  296 (485)
                      ..|-..+++..++-+.+. .....+..+.|-  |+..+++.++.       ||..            ...|..+.+..+.
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            788888998888766654 345678888886  67778888776       3331            1112222322222


Q ss_pred             eccCCccEEEEEEcCCCCEEEEEeCCC---------------CEEEEEC-------------------------CC----
Q 011457          297 LAGHDNTVCSVFTRPTDPQVVTGSHDS---------------TIKFWDL-------------------------RY----  332 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~~~~l~s~s~dg---------------~I~iwd~-------------------------~~----  332 (485)
                      +.- .+........+++.+.++.+.+.               .+.++|+                         +.    
T Consensus       233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence            211 12222344466677766655432               2444443                         22    


Q ss_pred             CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCce-------------eeeeccCCcccEEEEEeCCCC
Q 011457          333 GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEF-------------LHNMLSQQKTIINSMAVNEEG  397 (485)
Q Consensus       333 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~  397 (485)
                      +..+..+-.-......+.++|||+++++++.-.  +.+++..+...             ..+  ..-.-.....+|.++|
T Consensus       312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae--~e~GlGPlHt~Fd~~G  389 (638)
T 3sbq_A          312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE--PELGLGPLHTTFDGRG  389 (638)
T ss_dssp             CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC--CBCCSCEEEEEECSSS
T ss_pred             CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee--ccCCCcccEEEECCCC
Confidence            111111111123445788999999999887664  99999874211             111  1123345678899999


Q ss_pred             -eEEEEeCCCcEEEEeCCC
Q 011457          398 -VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       398 -~l~sg~~dg~I~iwd~~~  415 (485)
                       ...+-.-|..|.-|++..
T Consensus       390 ~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          390 NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEEEEETTTTEEEEEEHHH
T ss_pred             ceEeeeeecceEEEEeccH
Confidence             444555899999999864

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.98  E-value=0.034  Score=53.01  Aligned_cols=231  Identities=11%  Similarity=0.052  Sum_probs=109.2

Q ss_pred             CCCEEEEEeCC-CeEEEEECCC--CceE--EEEc-ccccCEEEEEEcCCCCEEEEEeC-C---------CcEEEEECCCC
Q 011457          186 SNTWFCTGSAD-RTIKIWDVAK--GTLK--LTLT-GHIEQVRGLAVSSKHTYMFSAGD-D---------KQVKCWDLEQN  249 (485)
Q Consensus       186 ~~~~l~tgs~d-g~I~iwd~~~--~~~~--~~~~-~h~~~V~~l~~s~~~~~l~s~~~-d---------g~V~iwd~~~~  249 (485)
                      ++.+++.|+.+ ..+.+||+.+  .+-.  ..+. .....-..+.+  ++.+++.|+. +         ..+.+||+.++
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56777777643 5788999864  2221  1112 11111122222  5666666665 2         46899999887


Q ss_pred             eeEEEeccc-CCce-EEEEEecCCCEEEEEECC---------------------------------------CcEEEEEC
Q 011457          250 KVIRSYHGH-LSGV-YCLGLHPTIDILLTGGRD---------------------------------------SVCRVWDI  288 (485)
Q Consensus       250 ~~~~~~~~h-~~~v-~~l~~~~~~~~l~sg~~d---------------------------------------g~i~iwd~  288 (485)
                      +....-... .... .+++. .++++++.|+.+                                       ..+.+||.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            654332211 1111 12222 466788888865                                       47889998


Q ss_pred             CCCceE--EEeccCCccEEEEEEcCCCCEEEEEeC------CCCEEEEEC--CCCeEE--eEeccCCCceEEEEECCCCC
Q 011457          289 RTKMQI--FALAGHDNTVCSVFTRPTDPQVVTGSH------DSTIKFWDL--RYGKTM--LTLTHHKKSVRAMALHPTED  356 (485)
Q Consensus       289 ~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~s~------dg~I~iwd~--~~~~~~--~~~~~~~~~v~~l~~~p~~~  356 (485)
                      .+.+-.  ..+......-.+++.. ++.+++.|+.      ...+.+||+  .+.+-.  ..+..........+...++.
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  254 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS  254 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred             CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence            775422  2222111110222222 4556666653      345777887  333221  11111111111112222556


Q ss_pred             EEEEEcC-----------------------CCEEEEECCCCcee--eeeccCCcccEEEEEeCCCCeEEEEeCCC-----
Q 011457          357 CFASASA-----------------------ENIKKFNLPKGEFL--HNMLSQQKTIINSMAVNEEGVLATGGDNG-----  406 (485)
Q Consensus       357 ~l~~~~~-----------------------~~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~sg~~dg-----  406 (485)
                      +++.++.                       ..+.+||..+.+-.  ..+. .......++. ..+.+++.|+.++     
T Consensus       255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~i~v~GG~~~~~~~~  332 (357)
T 2uvk_A          255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QGRAYGVSLP-WNNSLLIIGGETAGGKAV  332 (357)
T ss_dssp             EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SCCBSSEEEE-ETTEEEEEEEECGGGCEE
T ss_pred             EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CCcccceeEE-eCCEEEEEeeeCCCCCEe
Confidence            6666652                       13778888765432  2221 1112222222 2333666677542     


Q ss_pred             -cEEEEeCCCCcccccc
Q 011457          407 -SLWFWDWKSGHNFQQA  422 (485)
Q Consensus       407 -~I~iwd~~~~~~~~~~  422 (485)
                       .|.++++++++.....
T Consensus       333 ~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          333 TDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEEEEEEC-CCSCEEEC
T ss_pred             eeEEEEEEcCcEeEeee
Confidence             4666788877665543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.93  E-value=0.024  Score=49.52  Aligned_cols=184  Identities=10%  Similarity=-0.021  Sum_probs=101.4

Q ss_pred             CCEEEEEECCCcEEEEECCCCce------EEEeccC--CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE------
Q 011457          271 IDILLTGGRDSVCRVWDIRTKMQ------IFALAGH--DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM------  336 (485)
Q Consensus       271 ~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~--~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~------  336 (485)
                      ..+|+....| +++.=-+.....      ...+ +.  =..+..++|+|++.+.++  .+|.+.-.+..+....      
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            3456666777 665555444331      1222 22  236779999998886666  6777777665442111      


Q ss_pred             eEec-cCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceee------eeccCCcccEEEEEeCCCCeEEEEeCCCcEE
Q 011457          337 LTLT-HHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLH------NMLSQQKTIINSMAVNEEGVLATGGDNGSLW  409 (485)
Q Consensus       337 ~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~------~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~  409 (485)
                      ..+- .--....++.|.|+|.+.++ +++.|+.++-++...-.      .+-...-..+..+.+.|+|.|.+.. ||.++
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly  157 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY  157 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred             cEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence            1110 00112478999999999998 55668888765432111      1111122467999999999887777 88865


Q ss_pred             EEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          410 FWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       410 iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      -....++.....+......+ ...-....-+.|+++|...+..  +|  ++|....
T Consensus       158 r~~~P~~~~~~wl~~~~~~g-~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          158 KALPPVSNQDNWLARATKIG-QGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             EECCCSSTTCCHHHHCEEEE-SSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             ecCCCCCCCcccccccceec-cCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence            44333221111110000000 0122234557799999777665  77  5555543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.90  E-value=0.3  Score=46.21  Aligned_cols=232  Identities=13%  Similarity=0.104  Sum_probs=125.5

Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEe----cccCCceEEEEEecC---CCEEEEE-E--CCCcE
Q 011457          216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV--IRSY----HGHLSGVYCLGLHPT---IDILLTG-G--RDSVC  283 (485)
Q Consensus       216 h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~--~~~~----~~h~~~v~~l~~~~~---~~~l~sg-~--~dg~i  283 (485)
                      .-.....|+|.|+|.++++--..|.|++++..+++.  +..+    .........|+++|+   +..|+.. +  .++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            345678999999998766665489999998765543  2222    123466899999995   3344432 2  34566


Q ss_pred             EEEECCCC----------ceEE-Eec-cCCccEEEEEEcCCCCEEEEEeC-------------CCCEEEEECCCCe----
Q 011457          284 RVWDIRTK----------MQIF-ALA-GHDNTVCSVFTRPTDPQVVTGSH-------------DSTIKFWDLRYGK----  334 (485)
Q Consensus       284 ~iwd~~~~----------~~~~-~~~-~~~~~v~~l~~~~~~~~l~s~s~-------------dg~I~iwd~~~~~----  334 (485)
                      .-|.+..+          +.+. .+. .....-..|.|.|++.+.++.+.             .|.|.-++....-    
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            66665541          1121 121 11223457999999987776542             3555555554210    


Q ss_pred             ---EEeEe-ccCCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCcee------------------eeeccCCcccEEE
Q 011457          335 ---TMLTL-THHKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFL------------------HNMLSQQKTIINS  390 (485)
Q Consensus       335 ---~~~~~-~~~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~------------------~~~~~~~~~~i~~  390 (485)
                         ....+ .++ .....++|+|++.++++-... . -.+.-+..+...                  ..+ ..+......
T Consensus       190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~-~~~~~ap~G  267 (347)
T 3das_A          190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW-STDEASPSG  267 (347)
T ss_dssp             SSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE-CTTTCCEEE
T ss_pred             CCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec-CCCCCCCcc
Confidence               00111 122 345689999998877765332 1 222222222211                  111 111123455


Q ss_pred             EEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457          391 MAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       391 ~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      ++|....+++..-..+.|....+..+..........    .+....+.++...|||.++++..
T Consensus       268 ~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l----~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          268 IAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFL----EGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEETTEEEEEESTTCSEEEEEEETTEESSCCEEES----TTTSSCEEEEEEEETTEEEEEEC
T ss_pred             eEEEcCceeeccccCCEEEEEEecCCceecceEEee----cCCCCCccEEEECCCCcEEEEEc
Confidence            666543355555556677777765543221111111    12245789999999997766654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.90  E-value=0.11  Score=48.51  Aligned_cols=221  Identities=13%  Similarity=0.121  Sum_probs=106.9

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEE-ecccCCceEEEEEecCCCEEEEEEC----CC-------cEEEEECCCCceEEE--e
Q 011457          232 MFSAGDDKQVKCWDLEQNKVIRS-YHGHLSGVYCLGLHPTIDILLTGGR----DS-------VCRVWDIRTKMQIFA--L  297 (485)
Q Consensus       232 l~s~~~dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~sg~~----dg-------~i~iwd~~~~~~~~~--~  297 (485)
                      ++.|+.  .+.+||..+++.... ...............++.+++.|+.    ++       .+.+||..+.+-...  +
T Consensus        19 ~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   96 (318)
T 2woz_A           19 LLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL   96 (318)
T ss_dssp             EEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB
T ss_pred             hhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC
Confidence            444443  488999998876542 1111112222333456778888873    12       177888876542211  1


Q ss_pred             ccCCccEEEEEEcCCCCEEEEEeCC-------CCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcC-----
Q 011457          298 AGHDNTVCSVFTRPTDPQVVTGSHD-------STIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASA-----  363 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~~~l~s~s~d-------g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~-----  363 (485)
                      .........+.+  ++..++.|+.+       ..+.+||+.+.+-...  +........ ++. .++.+++.|+.     
T Consensus        97 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           97 PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSC
T ss_pred             CccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCC
Confidence            111111222222  56677777754       2478889887653322  111111111 222 35666666643     


Q ss_pred             --CCEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457          364 --ENIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSEA  435 (485)
Q Consensus       364 --~~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  435 (485)
                        +.+.+||..+.+-...-. ........ +....+.+++.|+.+     ..+.+||..+.+- ..+.....+     ..
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~-----r~  245 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFG-VAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQE-----RS  245 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSC-----CB
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccce-EEEECCEEEEEcCcCCCCccceEEEEECCCCeE-EECCCCCCc-----cc
Confidence              238999988765332211 11111122 223333456666543     3577899877542 222211111     11


Q ss_pred             cEEEEEEccCCCEEEEEECC--------------CcEEEecCCCCC
Q 011457          436 GIYALSYDVTGSRLVTCEAD--------------KTIKMWREDETA  467 (485)
Q Consensus       436 ~V~~l~~s~~g~~L~s~~~D--------------g~I~iW~~~~~~  467 (485)
                      ....+.  .+++.++.||.+              ..|.+||..+..
T Consensus       246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            112222  246677777754              347777776654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.56  E-value=0.054  Score=51.57  Aligned_cols=233  Identities=10%  Similarity=0.079  Sum_probs=109.4

Q ss_pred             CCCEEEEEeC-CCcEEEEECCC--CeeEE--Eec-ccCCceEEEEEecCCCEEEEEEC-C---------CcEEEEECCCC
Q 011457          228 KHTYMFSAGD-DKQVKCWDLEQ--NKVIR--SYH-GHLSGVYCLGLHPTIDILLTGGR-D---------SVCRVWDIRTK  291 (485)
Q Consensus       228 ~~~~l~s~~~-dg~V~iwd~~~--~~~~~--~~~-~h~~~v~~l~~~~~~~~l~sg~~-d---------g~i~iwd~~~~  291 (485)
                      ++.+++.|+. ...+.+||+.+  ++...  .+. .....- +++.. ++.+++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            4555555553 34688888864  33222  122 111111 22222 5667777776 2         46889998875


Q ss_pred             ceEEE--ec-cCCccEEEEEEcCCCCEEEEEeCC---------------------------------------CCEEEEE
Q 011457          292 MQIFA--LA-GHDNTVCSVFTRPTDPQVVTGSHD---------------------------------------STIKFWD  329 (485)
Q Consensus       292 ~~~~~--~~-~~~~~v~~l~~~~~~~~l~s~s~d---------------------------------------g~I~iwd  329 (485)
                      +-...  +. .......++.  .++.+++.|+.+                                       ..+.+||
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  174 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD  174 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred             cEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence            42211  11 1111222222  456777888765                                       4789999


Q ss_pred             CCCCeEEe--EeccCCCceEEEEECCCCCEEEEEcC-------CCEEEEEC--CCCceee--eeccCCccc-EEEEEeCC
Q 011457          330 LRYGKTML--TLTHHKKSVRAMALHPTEDCFASASA-------ENIKKFNL--PKGEFLH--NMLSQQKTI-INSMAVNE  395 (485)
Q Consensus       330 ~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~~-------~~i~i~d~--~~~~~~~--~~~~~~~~~-i~~~~~~~  395 (485)
                      +.+.+-..  .+......-.+++.. ++.+++.++.       +.+..||+  .+.+-..  .+ ...... -.++....
T Consensus       175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~  252 (357)
T 2uvk_A          175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISN  252 (357)
T ss_dssp             TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEET
T ss_pred             CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEEC
Confidence            88765322  222111111223332 4556665542       23777876  3332211  11 111111 11233333


Q ss_pred             CCeEEEEeCC----------------------CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE
Q 011457          396 EGVLATGGDN----------------------GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE  453 (485)
Q Consensus       396 ~~~l~sg~~d----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~  453 (485)
                      +.+++.|+.+                      ..+.+||..+.+- ..+.....+ ...|    .++  ..+++.++.||
T Consensus       253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~-r~~~----~~~--~~~~~i~v~GG  324 (357)
T 2uvk_A          253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW-DKSGELSQG-RAYG----VSL--PWNNSLLIIGG  324 (357)
T ss_dssp             TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C-EEEEECSSC-CBSS----EEE--EETTEEEEEEE
T ss_pred             CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce-eeCCCCCCC-cccc----eeE--EeCCEEEEEee
Confidence            4466666532                      2578899876532 222221111 1111    122  24578888888


Q ss_pred             CCC------cEEEecCCCCCCCCCCCC
Q 011457          454 ADK------TIKMWREDETATPETHPL  474 (485)
Q Consensus       454 ~Dg------~I~iW~~~~~~~~~~~~~  474 (485)
                      .++      .|.++++++++..+..|.
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            653      466678888887666554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.47  E-value=0.77  Score=45.28  Aligned_cols=105  Identities=12%  Similarity=0.217  Sum_probs=63.0

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEecc------cCCceEEEEEecC---CCEEEEEEC------
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV--IRSYHG------HLSGVYCLGLHPT---IDILLTGGR------  279 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~--~~~~~~------h~~~v~~l~~~~~---~~~l~sg~~------  279 (485)
                      -.....|+|.|+|+++++-...+.|++++..+++.  +..+..      .......|+|+|+   +..|+....      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34567999999998666654445798888665543  222321      2456789999995   444444432      


Q ss_pred             -------CCcEEEEECCCC-------ceEEE-ec-cCCccEEEEEEcCCCCEEEEEeC
Q 011457          280 -------DSVCRVWDIRTK-------MQIFA-LA-GHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       280 -------dg~i~iwd~~~~-------~~~~~-~~-~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                             ...|.-|++...       +.+.. +. ........|.|.|+|.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   235666655332       11221 22 11234788999999987776553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.31  E-value=0.16  Score=56.32  Aligned_cols=232  Identities=11%  Similarity=0.123  Sum_probs=134.1

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccc---
Q 011457          183 FDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGH---  258 (485)
Q Consensus       183 ~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h---  258 (485)
                      .+|..+.+|.=. ..++.|+|+++...+..+.- ...|.-=.|-.... |+..+ +..|.-|+++.. .+++.+..|   
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence            566666665554 67999999998887777664 45666667765544 44442 467999999743 444444434   


Q ss_pred             -CCceEEEEEecCCCEEEEEE-------CCCcEEEEECCCCceEEEeccCCccEEEEEEcC--CCCEEEE-Ee---CCCC
Q 011457          259 -LSGVYCLGLHPTIDILLTGG-------RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP--TDPQVVT-GS---HDST  324 (485)
Q Consensus       259 -~~~v~~l~~~~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s-~s---~dg~  324 (485)
                       ...|..-..+++.++++..|       -.|.+.+|..+.+ ..+.+.||......+....  ....|++ +.   ..+.
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k  227 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence             35577777788888666444       3578889988654 3445566665554444321  1112222 11   1268


Q ss_pred             EEEEECCCC---eE------EeEeccC---CCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEE
Q 011457          325 IKFWDLRYG---KT------MLTLTHH---KKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       325 I~iwd~~~~---~~------~~~~~~~---~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      ++|.++...   ..      +..+...   ..-..++..++....+...+..| +.+||+.++..+..-...........
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~  307 (1630)
T 1xi4_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA  307 (1630)
T ss_pred             EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEec
Confidence            888887542   11      1111111   22234566676666666666555 99999999988765432222222222


Q ss_pred             EeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457          392 AVNEEGVLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       392 ~~~~~~~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      ...+.+-+++....|.|.-..+.....+
T Consensus       308 ~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          308 PHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             cCCCCCceEEEcCCceEEEEEEccchhh
Confidence            2223334455557777777666654443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.29  E-value=0.43  Score=43.74  Aligned_cols=223  Identities=13%  Similarity=0.063  Sum_probs=115.9

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~  256 (485)
                      .|..|+....- .++. . ||.|..|-....-.+..-......|..++...+...++  . ||.|..|-....-.+..-.
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCCCc
Confidence            46666654322 2333 4 88898887543221111111234677777665544333  4 8999999754322111111


Q ss_pred             ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEE
Q 011457          257 GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM  336 (485)
Q Consensus       257 ~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~  336 (485)
                      .-...|..++...+  ..+.-. ||.|+.|-.....++-........|..++.....  .+.-. ||.|..|-......+
T Consensus        99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gql  172 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQT  172 (282)
T ss_dssp             GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTT
T ss_pred             ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCC
Confidence            12346777776654  333344 9999999876432221111223457777665433  23334 799999965542221


Q ss_pred             eEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457          337 LTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       337 ~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~  416 (485)
                      ..-......|..++....... +. .++.++.|-......+.. .......|..++......++..  ||.|+.|-....
T Consensus       173 g~p~~~~~~v~~i~~G~~hs~-al-~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          173 TVPAEAQSGVDDVAGGIFHSL-AL-KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWYSLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             SCCGGGGSSEEEEEECSSEEE-EE-ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSCEEEEE--TTEEEEESTTCC
T ss_pred             CCceecCCCeEEEEecCCEEE-EE-ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCCEEEEEE--CCEEEEecCCCC
Confidence            111111345777766543333 33 445588887654322211 1111234666666655544444  999999976553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.11  E-value=0.3  Score=44.87  Aligned_cols=226  Identities=13%  Similarity=0.065  Sum_probs=119.8

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL  297 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  297 (485)
                      ..|..++......++ . . ||.|..|-....-.+..-......|..++..... .++. . ||.|..|-....-++-.-
T Consensus        24 ~~i~~ia~G~~h~~~-l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           24 SGVDAIAGGYFHGLA-L-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SSCCEEEECSSEEEE-E-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCCcEEEeCCCeEEE-E-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            357777765443333 3 4 8999999754322111111123456667665442 3333 4 899999987643222111


Q ss_pred             ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCcee
Q 011457          298 AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFL  377 (485)
Q Consensus       298 ~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~  377 (485)
                      ..-...|..++....  ..+.-. ||.|..|-....-.+..-......|..++......+++ . ++.++.|-......+
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gql  172 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFGQT  172 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTSTT
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCCCC
Confidence            112346777777644  334445 99999997554222111111234566666654333332 2 455888876543222


Q ss_pred             eeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCc
Q 011457          378 HNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKT  457 (485)
Q Consensus       378 ~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~  457 (485)
                      .. .......|..++......++.  .||.|+.|-......+....        .....|..++-.... .++. . ||.
T Consensus       173 g~-p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~--------~~~~~v~~i~~G~~h-~~al-~-~g~  238 (282)
T 3qhy_B          173 TV-PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPT--------EALSGVSAIASGEWY-SLAL-K-NGK  238 (282)
T ss_dssp             SC-CGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCG--------GGGSSCCEEEECSSC-EEEE-E-TTE
T ss_pred             CC-ceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCc--------ccCCCceEEEcCCCE-EEEE-E-CCE
Confidence            11 111234577777766655555  59999999765443332111        012246666655443 3333 3 999


Q ss_pred             EEEecCCCCCC
Q 011457          458 IKMWREDETAT  468 (485)
Q Consensus       458 I~iW~~~~~~~  468 (485)
                      |+.|-.+...+
T Consensus       239 v~~wG~n~~gq  249 (282)
T 3qhy_B          239 VIAWGSSRTAP  249 (282)
T ss_dssp             EEEESTTCCCC
T ss_pred             EEEecCCCCcc
Confidence            99998776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.96  E-value=0.33  Score=50.92  Aligned_cols=193  Identities=8%  Similarity=0.089  Sum_probs=104.1

Q ss_pred             cCCCEEEEEeCC----CeEEEEECCCCceEEEE-c------ccccCEEEEEEcC-CCCEEEEEeCC------CcEEEEEC
Q 011457          185 HSNTWFCTGSAD----RTIKIWDVAKGTLKLTL-T------GHIEQVRGLAVSS-KHTYMFSAGDD------KQVKCWDL  246 (485)
Q Consensus       185 p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~-~------~h~~~V~~l~~s~-~~~~l~s~~~d------g~V~iwd~  246 (485)
                      .++..++.|+.+    ..+.+||..+++-...- .      .....-.+++... ++..++.||.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            467777888753    46889998877544322 1      0111112233333 67777777753      35889999


Q ss_pred             CCCeeEEEecccC-CceEEEEEecCCCEEEEEECCC--cEEEEECCCCceEEEe-----ccCCccEEEEEEcCC-CCEEE
Q 011457          247 EQNKVIRSYHGHL-SGVYCLGLHPTIDILLTGGRDS--VCRVWDIRTKMQIFAL-----AGHDNTVCSVFTRPT-DPQVV  317 (485)
Q Consensus       247 ~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~-~~~l~  317 (485)
                      .+++....-.... ..-.+++...++.+++.||.++  .+.+||..+..-...-     ........++.+..+ +..++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            8875443221111 1112233324778888888765  6899999876422111     111122233455544 55667


Q ss_pred             EEeC--C-----CCEEEEECCCCeE-----EeEecc---CCCceEEEEECCCCCEEEEEcC---------CCEEEEECCC
Q 011457          318 TGSH--D-----STIKFWDLRYGKT-----MLTLTH---HKKSVRAMALHPTEDCFASASA---------ENIKKFNLPK  373 (485)
Q Consensus       318 s~s~--d-----g~I~iwd~~~~~~-----~~~~~~---~~~~v~~l~~~p~~~~l~~~~~---------~~i~i~d~~~  373 (485)
                      .|+.  +     ..+.+||+.+..-     -..+..   ....-.++....++.+++.|+.         +.+.+||..+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            7765  2     3588999987761     111111   1111122333333666666652         2389999987


Q ss_pred             Ccee
Q 011457          374 GEFL  377 (485)
Q Consensus       374 ~~~~  377 (485)
                      ++-.
T Consensus       636 ~~W~  639 (695)
T 2zwa_A          636 ETLT  639 (695)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            7644

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.90  E-value=1.3  Score=42.54  Aligned_cols=267  Identities=10%  Similarity=0.009  Sum_probs=126.3

Q ss_pred             CEEEEEeCCCeEEEEECCC-CceEEEE--cccccCEEEEEEcC-CCCEEEEEeCCC----cEEEEECCCCeeEEEecc--
Q 011457          188 TWFCTGSADRTIKIWDVAK-GTLKLTL--TGHIEQVRGLAVSS-KHTYMFSAGDDK----QVKCWDLEQNKVIRSYHG--  257 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~-~~~~~~~--~~h~~~V~~l~~s~-~~~~l~s~~~dg----~V~iwd~~~~~~~~~~~~--  257 (485)
                      ..|..|+..| +.+++... +..-..+  ......|.+|++.| +...|.+++..|    .|...+ +.++.-..+..  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence            3566777766 44554332 2222111  12245699999998 333455555544    344332 33332222210  


Q ss_pred             ------------cCCceEEEEEecC--CCEEEEEECCCcEEEEECCCCceEEEecc-------------------CCccE
Q 011457          258 ------------HLSGVYCLGLHPT--IDILLTGGRDSVCRVWDIRTKMQIFALAG-------------------HDNTV  304 (485)
Q Consensus       258 ------------h~~~v~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v  304 (485)
                                  ....|.++++.|.  .+.|..++..+.|...+- .++.-..+..                   ....+
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence                        1125778999872  456666666665554432 2222222211                   12357


Q ss_pred             EEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccC-------------CCceEEEEECCC-CCEEEEEcCCCEEEE
Q 011457          305 CSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHH-------------KKSVRAMALHPT-EDCFASASAENIKKF  369 (485)
Q Consensus       305 ~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~p~-~~~l~~~~~~~i~i~  369 (485)
                      .+|.+.|. ...|+++..++.|...+ ..++.-..+...             ...+.+|.++|. ...+..+..++|...
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s  258 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM  258 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence            88999873 34555555444444432 223322222110             134889999986 355666666666665


Q ss_pred             ECCCCceeeeecc-CCc---ccEEEEEeCCC--CeEEEEeC-----------CCcEEEEeCCC-CcccccceeeeccCCC
Q 011457          370 NLPKGEFLHNMLS-QQK---TIINSMAVNEE--GVLATGGD-----------NGSLWFWDWKS-GHNFQQAQTIVQPGSL  431 (485)
Q Consensus       370 d~~~~~~~~~~~~-~~~---~~i~~~~~~~~--~~l~sg~~-----------dg~I~iwd~~~-~~~~~~~~~~~~~~~~  431 (485)
                      +- .++.-..+.. ...   ..+.++.++|.  +.|.++..           ++...+|.... |+....+..- .+...
T Consensus       259 ~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~g-lp~~~  336 (394)
T 3b7f_A          259 DR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRG-LPTDQ  336 (394)
T ss_dssp             ET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBT-SCCSS
T ss_pred             CC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCC-CCCcc
Confidence            43 2333222221 111   34567777753  35555532           33345555444 3443332210 01000


Q ss_pred             CCC-ccEEEEEEccC-CCEEEEEECCCcEEE
Q 011457          432 DSE-AGIYALSYDVT-GSRLVTCEADKTIKM  460 (485)
Q Consensus       432 ~~~-~~V~~l~~s~~-g~~L~s~~~Dg~I~i  460 (485)
                      ... .....++++|. ...|+.++.++.|..
T Consensus       337 ~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~  367 (394)
T 3b7f_A          337 AWLTVKRQAMTADAHAPVGVYFGTTGGEIWA  367 (394)
T ss_dssp             CCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred             ccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            000 01135778774 345666666666554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.23  E-value=0.74  Score=48.21  Aligned_cols=190  Identities=12%  Similarity=0.139  Sum_probs=101.9

Q ss_pred             CCCCEEEEEeCC----CcEEEEECCCCeeEEEe-c------ccCCceEEEEEec-CCCEEEEEECCC------cEEEEEC
Q 011457          227 SKHTYMFSAGDD----KQVKCWDLEQNKVIRSY-H------GHLSGVYCLGLHP-TIDILLTGGRDS------VCRVWDI  288 (485)
Q Consensus       227 ~~~~~l~s~~~d----g~V~iwd~~~~~~~~~~-~------~h~~~v~~l~~~~-~~~~l~sg~~dg------~i~iwd~  288 (485)
                      .++..++.||.+    ..+.+||+.+++....- .      .....-.+++..+ ++.+++.||.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456667777653    46889999887654432 1      1111112334443 677888887643      5788998


Q ss_pred             CCCceEE--EeccCCccEEEEEEcCCCCEEEEEeCCC--CEEEEECCCCeEEeEe-----ccCCCceEEEEECCC-CCEE
Q 011457          289 RTKMQIF--ALAGHDNTVCSVFTRPTDPQVVTGSHDS--TIKFWDLRYGKTMLTL-----THHKKSVRAMALHPT-EDCF  358 (485)
Q Consensus       289 ~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~-~~~l  358 (485)
                      .+.+-..  .+...... .+++...++..++.|+.++  .+.+||..+..-...-     ........++.+..+ +.++
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8753221  11111111 1222223777888887655  6999999876532211     111222333555554 6666


Q ss_pred             EEEcC--------CCEEEEECCCCce-----eeeec---cCCcccEEEEEeCCCCeEEEEeC--------CCcEEEEeCC
Q 011457          359 ASASA--------ENIKKFNLPKGEF-----LHNML---SQQKTIINSMAVNEEGVLATGGD--------NGSLWFWDWK  414 (485)
Q Consensus       359 ~~~~~--------~~i~i~d~~~~~~-----~~~~~---~~~~~~i~~~~~~~~~~l~sg~~--------dg~I~iwd~~  414 (485)
                      +.|+.        +.+.+||+.+..-     -..+.   ........++.+..+.+++.|+.        ...|.+||..
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            66654        1288999887761     11111   11122223333332446666764        3469999988


Q ss_pred             CCc
Q 011457          415 SGH  417 (485)
Q Consensus       415 ~~~  417 (485)
                      +..
T Consensus       635 t~~  637 (695)
T 2zwa_A          635 SET  637 (695)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.23  E-value=1.9  Score=39.85  Aligned_cols=172  Identities=6%  Similarity=0.004  Sum_probs=99.0

Q ss_pred             EEccCCCEEEEEeCC--------------CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----CCCcEEE
Q 011457          182 AFDHSNTWFCTGSAD--------------RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----DDKQVKC  243 (485)
Q Consensus       182 ~~sp~~~~l~tgs~d--------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----~dg~V~i  243 (485)
                      -+++++++|+-+...              ..|+..++...+......   ..  +..|++++.+|+-..    .+..|..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            457788888766543              467888877665333222   11  236777888888665    3445666


Q ss_pred             EECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 011457          244 WDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD  322 (485)
Q Consensus       244 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d  322 (485)
                      .++.... ...+..+..    ..++++++.|+-.+. ...|.+.++..+.....+.   +... ..+.|++.+|+-...+
T Consensus       134 ~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          134 IRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGG
T ss_pred             EECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcC
Confidence            6666433 333433322    456778887776655 6788888887665443333   2222 2355888888766544


Q ss_pred             C--CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-C--EEEEECC
Q 011457          323 S--TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-N--IKKFNLP  372 (485)
Q Consensus       323 g--~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~--i~i~d~~  372 (485)
                      +  .|..-++.... ...+..  ..+  ..|+|++..|.-+... .  |...++.
T Consensus       205 ~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          205 RDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             GTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             CCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence            3  46666665433 333332  223  3377788877765332 2  6666654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.82  E-value=3.4  Score=40.65  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=63.8

Q ss_pred             CCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE--EEecc------CCccEEEEEEcCC---CCEEEEEeC------
Q 011457          259 LSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI--FALAG------HDNTVCSVFTRPT---DPQVVTGSH------  321 (485)
Q Consensus       259 ~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~l~~~~~---~~~l~s~s~------  321 (485)
                      ....+.|+|.|+|+++++-...+.|++++..+++..  ..+..      .......|+++|+   +..|++...      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            446689999999986666443357988887655432  22221      2456779999996   556655442      


Q ss_pred             -------CCCEEEEECCCC-------eEEe-Eecc-CCCceEEEEECCCCCEEEEEcC
Q 011457          322 -------DSTIKFWDLRYG-------KTML-TLTH-HKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       322 -------dg~I~iwd~~~~-------~~~~-~~~~-~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                             ...|.-|+....       +.+. .+.. .......|+|.|+|.++++.++
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   234666655322       1111 1221 1234788999999998887553

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=94.26  E-value=3.5  Score=38.49  Aligned_cols=226  Identities=8%  Similarity=0.009  Sum_probs=125.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCc---------eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE---CCC------
Q 011457          187 NTWFCTGSADRTIKIWDVAKGT---------LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD---LEQ------  248 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd---~~~------  248 (485)
                      ...+++.+.+|.|+--.+.+.+         .-..+. ....+..+........|+.-+..|.++-..   +..      
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~   81 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR   81 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence            3467777788888766543211         111122 234555555555566666666777665543   332      


Q ss_pred             CeeEEEec--ccCCceEEEEEec---CCCEEEEEECCCcEEEEECCCCc-------eEEEeccCCccEEEEEEcCCCCEE
Q 011457          249 NKVIRSYH--GHLSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRTKM-------QIFALAGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       249 ~~~~~~~~--~h~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~l  316 (485)
                      |..+..+-  .....|..+...+   +..+++..+.+|.++--.+....       ....+.. .+.+..+........|
T Consensus        82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i  160 (327)
T 3uc1_A           82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL  160 (327)
T ss_dssp             CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred             CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence            22221111  1234555554433   46799999999999998875422       1222332 3455555555556688


Q ss_pred             EEEeCCCCEEEEECC--CC---------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC-------cee
Q 011457          317 VTGSHDSTIKFWDLR--YG---------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG-------EFL  377 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~--~~---------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~-------~~~  377 (485)
                      +..+..|.+..+...  .-         .....+. ....|.++...+.+..++..+..+ ++...+..-       +-+
T Consensus       161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~  239 (327)
T 3uc1_A          161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV  239 (327)
T ss_dssp             EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence            888999998888766  21         1112222 234566666666666666666666 666654321       112


Q ss_pred             eee--ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 011457          378 HNM--LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       378 ~~~--~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~  415 (485)
                      ..+  .......+.......+..++..+.+|.+.-++...
T Consensus       240 ~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          240 LTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             ESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            111  11123344444455555777788889888887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.87  E-value=5.9  Score=39.66  Aligned_cols=186  Identities=11%  Similarity=0.080  Sum_probs=110.3

Q ss_pred             CCCEEEEEe-CCCeEEEEECCCCceEEEEcc-cccCEEEEEEc--CCCCEEEEEeC-------CCcEE------------
Q 011457          186 SNTWFCTGS-ADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVS--SKHTYMFSAGD-------DKQVK------------  242 (485)
Q Consensus       186 ~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s--~~~~~l~s~~~-------dg~V~------------  242 (485)
                      ||+||+.-. .+..|-..++...++...+.- ....+..+.|-  |+..|++++++       ||...            
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            677888776 456788889988887665543 45678888886  68889888874       33311            


Q ss_pred             EEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC---------------cEEEEE--------------------
Q 011457          243 CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS---------------VCRVWD--------------------  287 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg---------------~i~iwd--------------------  287 (485)
                      ..|.++.+...++. -......+...+++.+.++.+.+.               .+.++|                    
T Consensus       221 ~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          221 AIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence            11222222222221 112223344566677777766541               233444                    


Q ss_pred             -----CCC----CceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCC------eE-------EeEeccCCC
Q 011457          288 -----IRT----KMQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYG------KT-------MLTLTHHKK  344 (485)
Q Consensus       288 -----~~~----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~------~~-------~~~~~~~~~  344 (485)
                           .+.    +..+..+-.-......+.++|||+++++++ .+.++.++|++..      +.       ..... ..-
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence                 332    111111111223345678899999987765 4778999998742      11       11122 234


Q ss_pred             ceEEEEECCCCCEEEEEcCCC-EEEEECCC
Q 011457          345 SVRAMALHPTEDCFASASAEN-IKKFNLPK  373 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~  373 (485)
                      .....+|.++|..+.+..-+. +..|++..
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccH
Confidence            567889999997777776676 99999865

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=93.18  E-value=5.5  Score=37.16  Aligned_cols=234  Identities=10%  Similarity=0.011  Sum_probs=122.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe-------eEE--EecccCCceEEEEEecCCCEEEEEECCCcEEEEE---CCCC-----
Q 011457          229 HTYMFSAGDDKQVKCWDLEQNK-------VIR--SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD---IRTK-----  291 (485)
Q Consensus       229 ~~~l~s~~~dg~V~iwd~~~~~-------~~~--~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd---~~~~-----  291 (485)
                      ...+++.+.+|.|+--.+.+.+       -+.  .++ ..+.+..+......+.|+.-+..|.++...   +...     
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~   81 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR   81 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence            4567888889998876643211       111  122 234555555556667777778888776554   3322     


Q ss_pred             -ceEEE---eccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCCC-------eEEeEeccCCCceEEEEECCCCCE
Q 011457          292 -MQIFA---LAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRYG-------KTMLTLTHHKKSVRAMALHPTEDC  357 (485)
Q Consensus       292 -~~~~~---~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~~~~~v~~l~~~p~~~~  357 (485)
                       ..+..   +. ....|.++...+   ++.+++..+.+|.|+.-.+...       .....+.. ...+..+........
T Consensus        82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~  159 (327)
T 3uc1_A           82 GQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDD  159 (327)
T ss_dssp             CEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCE
T ss_pred             CEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCE
Confidence             21111   22 234555554433   4779999999999999876542       22223333 334444444334444


Q ss_pred             EEEEcCC-CEEEEECC--CCce-------eeeeccCCcccEEEEEe-CCCCeEEEEeCCCcEEEEeCCCCcccccc-eee
Q 011457          358 FASASAE-NIKKFNLP--KGEF-------LHNMLSQQKTIINSMAV-NEEGVLATGGDNGSLWFWDWKSGHNFQQA-QTI  425 (485)
Q Consensus       358 l~~~~~~-~i~i~d~~--~~~~-------~~~~~~~~~~~i~~~~~-~~~~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~  425 (485)
                      ++..+.. .+..+...  .-..       ..-+.-..+..|..+.. .++..++..+..|.++.-.+..-.....- ...
T Consensus       160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~  239 (327)
T 3uc1_A          160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV  239 (327)
T ss_dssp             EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence            4444444 46666655  2111       11111122334554444 44448999999999998876433221110 000


Q ss_pred             eccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          426 VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       426 ~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      ...........+..+....+...++..+.+|.+.-++.++
T Consensus       240 ~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          240 LTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             ESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            0000011123354544444455677778888877776543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=93.00  E-value=5.1  Score=36.33  Aligned_cols=153  Identities=11%  Similarity=0.020  Sum_probs=93.2

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEE---ECCCCceEEEEcccccCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe-
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIW---DVAKGTLKLTLTGHIEQVRGLAVSS-KHTYMFSAGDDKQVKCWDLEQNK-  250 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iw---d~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~V~iwd~~~~~-  250 (485)
                      +.+..+......++|+.-+.+|.++--   ++........+. ....|..+.... +..+++..+.+|.|+...+..-. 
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~  102 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY  102 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence            445555555555566666777766543   333221111132 345666664421 46789999999999999875532 


Q ss_pred             -----eEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCC---------CceEEEeccCCccEEEEEEcCCCCEE
Q 011457          251 -----VIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT---------KMQIFALAGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       251 -----~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~l  316 (485)
                           ..-.+. -.+.+..+....+.+.++..+.+|.+..++...         |.....+. ....|..+...+++..+
T Consensus       103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~l  180 (276)
T 3no0_A          103 KAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYL  180 (276)
T ss_dssp             CSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEE
T ss_pred             hcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEE
Confidence                 111223 234555555555666888899999988887642         11112232 23556666555667789


Q ss_pred             EEEeCCCCEEEEECC
Q 011457          317 VTGSHDSTIKFWDLR  331 (485)
Q Consensus       317 ~s~s~dg~I~iwd~~  331 (485)
                      +..+..|.++...+.
T Consensus       181 l~~T~~G~~kr~~~~  195 (276)
T 3no0_A          181 LVITAKGRVKKISHE  195 (276)
T ss_dssp             EEEETTSCEEEEEGG
T ss_pred             EEEeCCCcEEEeEHH
Confidence            999999999988764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.92  E-value=10  Score=37.25  Aligned_cols=245  Identities=13%  Similarity=0.110  Sum_probs=120.7

Q ss_pred             cCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe---eEEEec---------ccCCceEEEEEecC----CCEEEEEEC-
Q 011457          218 EQVRGLAVSSKHT-YMFSAGDDKQVKCWDLEQNK---VIRSYH---------GHLSGVYCLGLHPT----IDILLTGGR-  279 (485)
Q Consensus       218 ~~V~~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~---~~~~~~---------~h~~~v~~l~~~~~----~~~l~sg~~-  279 (485)
                      ..-..|+|.|++. .|+++...|.|++++.....   .+..+.         ........|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567899999996 56666788999999754321   222221         11456889999996    443333222 


Q ss_pred             -C----------CcEEEEECCC----------CceEEEec--cCCccEEEEEEcCCCCEEEEEeCCC-------------
Q 011457          280 -D----------SVCRVWDIRT----------KMQIFALA--GHDNTVCSVFTRPTDPQVVTGSHDS-------------  323 (485)
Q Consensus       280 -d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~s~dg-------------  323 (485)
                       +          ..|.-|.+..          .+.+..+.  .....-..|.|.||+.+.++.+..+             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          1344455532          12333332  1223467899999998777665543             


Q ss_pred             ----CEEEEECCCCe-----E--------------EeEe-ccCCCceEEEEECCC-----CC-EEEEEcCCC-----EEE
Q 011457          324 ----TIKFWDLRYGK-----T--------------MLTL-THHKKSVRAMALHPT-----ED-CFASASAEN-----IKK  368 (485)
Q Consensus       324 ----~I~iwd~~~~~-----~--------------~~~~-~~~~~~v~~l~~~p~-----~~-~l~~~~~~~-----i~i  368 (485)
                          .|.-.|.....     .              ...+ .++ .....++|+|.     |. ++..+...+     -.+
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei  252 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININLTILCSDSNGKNRSSARI  252 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence                23333333210     0              0001 111 13456889986     34 344332211     233


Q ss_pred             EECCCCc------eeeeeccCC-cccEEEEEeCCC-------CeEEEEeCCCcEEEEeCCCCcccccceeeec--cC--C
Q 011457          369 FNLPKGE------FLHNMLSQQ-KTIINSMAVNEE-------GVLATGGDNGSLWFWDWKSGHNFQQAQTIVQ--PG--S  430 (485)
Q Consensus       369 ~d~~~~~------~~~~~~~~~-~~~i~~~~~~~~-------~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~~--~  430 (485)
                      ..+..+.      .+..+ ..+ ...+..+.|-..       +.++++...+.|....++.+........+..  ..  .
T Consensus       253 ~~i~~G~~yG~~~P~~~~-~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~  331 (463)
T 2wg3_C          253 LQIIKGKDYESEPSLLEF-KPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR  331 (463)
T ss_dssp             EEEC----CCSCCCCEEC-CC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred             eeeccCCCCCCCCCeEEe-eCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence            3333332      22222 111 134566666432       2356666668777776654432221111100  00  0


Q ss_pred             CCCCccEEEEEEccCCCEEEEEECC-----CcEEEecCC
Q 011457          431 LDSEAGIYALSYDVTGSRLVTCEAD-----KTIKMWRED  464 (485)
Q Consensus       431 ~~~~~~V~~l~~s~~g~~L~s~~~D-----g~I~iW~~~  464 (485)
                      ......+.++.+.|||.++++....     ..=+||++.
T Consensus       332 ~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          332 GYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             SCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             ccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence            1123569999999999988877521     223566665

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=90.74  E-value=10  Score=34.97  Aligned_cols=236  Identities=13%  Similarity=0.076  Sum_probs=122.2

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEE---------EecccCCceEEEEEecCCCEEEEEECCCcEEEEECC---C----
Q 011457          227 SKHTYMFSAGDDKQVKCWDLEQNKVIR---------SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR---T----  290 (485)
Q Consensus       227 ~~~~~l~s~~~dg~V~iwd~~~~~~~~---------~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~----  290 (485)
                      |+..++++.+.+|.|+--.+...+..+         .++ ..+.+..+......+.|+..+..|.++-+...   .    
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            356678899999999888775433221         122 22344445555556778888888987666542   2    


Q ss_pred             --CceEE---EeccCCccEEEEEEc---CCCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECCCC
Q 011457          291 --KMQIF---ALAGHDNTVCSVFTR---PTDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHPTE  355 (485)
Q Consensus       291 --~~~~~---~~~~~~~~v~~l~~~---~~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~  355 (485)
                        |..+.   .+. ....|.++...   .++.+++..+.+|.++...+..       +.....+... ..+..+......
T Consensus        80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~  157 (307)
T 1zi0_A           80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE  157 (307)
T ss_dssp             SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred             CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence              11111   122 23456555442   3566899999999999987642       2222233333 444444443334


Q ss_pred             CEEE-EEcCCCEEEEECCCCc-------eeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc-eee
Q 011457          356 DCFA-SASAENIKKFNLPKGE-------FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA-QTI  425 (485)
Q Consensus       356 ~~l~-~~~~~~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~-~~~  425 (485)
                      ..++ ..+.+.+..+....-.       -..-+....+..+..+....++ .+++.+..|.++-.++..-.....- ...
T Consensus       158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~  237 (307)
T 1zi0_A          158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV  237 (307)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred             CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence            4444 4444446666653211       1111112233445555544434 7888899999998876432111110 000


Q ss_pred             eccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          426 VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       426 ~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      .........+.+..+....+...|+..+.+|.+.-+..++
T Consensus       238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            0001112234555554434445667777888877666654

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=89.47  E-value=13  Score=34.31  Aligned_cols=225  Identities=11%  Similarity=0.070  Sum_probs=124.0

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceE---------EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---C---
Q 011457          185 HSNTWFCTGSADRTIKIWDVAKGTLK---------LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ---N---  249 (485)
Q Consensus       185 p~~~~l~tgs~dg~I~iwd~~~~~~~---------~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~---~---  249 (485)
                      ++..++++.+.+|.|+--.+...+..         ..+. ..+.+..+........++..+..|.++-.....   .   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            46678889999999998876433211         1122 224455555555566777778888877766532   1   


Q ss_pred             ---eeE---EEecccCCceEEEEEec---CCCEEEEEECCCcEEEEECCCC-------ceEEEeccCCccEEEEEEcCCC
Q 011457          250 ---KVI---RSYHGHLSGVYCLGLHP---TIDILLTGGRDSVCRVWDIRTK-------MQIFALAGHDNTVCSVFTRPTD  313 (485)
Q Consensus       250 ---~~~---~~~~~h~~~v~~l~~~~---~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~~~  313 (485)
                         ..+   -.+. ....|.++...+   +..+|+..+.+|.++...+...       .....+.. .+.+..+.....+
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence               110   0122 223455554333   4568889999999999887532       22222332 4556666555556


Q ss_pred             CEEEEEeCCCCEEEEECCC---------CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC---------
Q 011457          314 PQVVTGSHDSTIKFWDLRY---------GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG---------  374 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~---------  374 (485)
                      ..++..+.+|.+..+....         |.....+.. ...|.++..-.++..++..+..+ ...+.+..-         
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG  241 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG  241 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence            6888899999999987643         222223332 34566665554555555555555 676666321         


Q ss_pred             ceeeeeccCC-cccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          375 EFLHNMLSQQ-KTIINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       375 ~~~~~~~~~~-~~~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                      .....+.... ...+....+.++..++..+..|.+.-...
T Consensus       242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~  281 (312)
T 1suu_A          242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA  281 (312)
T ss_dssp             EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred             EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            1122221112 22334445555556666667775544444

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.27  E-value=23  Score=36.90  Aligned_cols=230  Identities=13%  Similarity=0.136  Sum_probs=119.4

Q ss_pred             EcCCCCEEEEE-e----CCCcEEEEECCCCeeEEE-ec-ccCC------ceEEEEEecCCCEEEEEE-----------CC
Q 011457          225 VSSKHTYMFSA-G----DDKQVKCWDLEQNKVIRS-YH-GHLS------GVYCLGLHPTIDILLTGG-----------RD  280 (485)
Q Consensus       225 ~s~~~~~l~s~-~----~dg~V~iwd~~~~~~~~~-~~-~h~~------~v~~l~~~~~~~~l~sg~-----------~d  280 (485)
                      ++|++++++.+ +    .-..|+++|+++++.+.. +. .-..      ....++|..+ +.++.+.           ..
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~  215 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLYP  215 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSSB
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCCC
Confidence            77888776654 2    234799999999987631 12 0000      1134578744 4444432           23


Q ss_pred             CcEEEEECCCCc--eEEEeccCCcc-EEEEEEcCCCC-----EEEEEeCC---CCEEEEECCC--CeEEeEeccCCCceE
Q 011457          281 SVCRVWDIRTKM--QIFALAGHDNT-VCSVFTRPTDP-----QVVTGSHD---STIKFWDLRY--GKTMLTLTHHKKSVR  347 (485)
Q Consensus       281 g~i~iwd~~~~~--~~~~~~~~~~~-v~~l~~~~~~~-----~l~s~s~d---g~I~iwd~~~--~~~~~~~~~~~~~v~  347 (485)
                      ..|+.|.+-+..  -...+.+.... -.+...++++.     .+++.+.+   ..+.+.|...  ++ ...+......  
T Consensus       216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~--  292 (711)
T 4hvt_A          216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDA--  292 (711)
T ss_dssp             CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTC--
T ss_pred             CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcc--
Confidence            568888876542  22333332222 33455566665     24443322   3456666553  33 2233222221  


Q ss_pred             EEEECCCCCEEEEE-----------cCCCEEEEECCCCc-------eeee-eccCCcccEEEEEeCCCCeEEEEeCCCc-
Q 011457          348 AMALHPTEDCFASA-----------SAENIKKFNLPKGE-------FLHN-MLSQQKTIINSMAVNEEGVLATGGDNGS-  407 (485)
Q Consensus       348 ~l~~~p~~~~l~~~-----------~~~~i~i~d~~~~~-------~~~~-~~~~~~~~i~~~~~~~~~~l~sg~~dg~-  407 (485)
                      .+..+.++.+++..           -.+.|...++.++.       .... +.......+..+.+..+.++++...+|. 
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  372 (711)
T 4hvt_A          293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVA  372 (711)
T ss_dssp             EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEE
T ss_pred             eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEE
Confidence            12233455555533           12238888887642       1222 3344556788899998877788877875 


Q ss_pred             -EEEEeCCCCc-ccccceeeeccCCCCCCccEEEEEEccCCCEE-EEEEC---CCcEEEecCC
Q 011457          408 -LWFWDWKSGH-NFQQAQTIVQPGSLDSEAGIYALSYDVTGSRL-VTCEA---DKTIKMWRED  464 (485)
Q Consensus       408 -I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L-~s~~~---Dg~I~iW~~~  464 (485)
                       |.++|+.++. ....+  +..    ...+.+....+++++..+ ++.+.   -+.+..++..
T Consensus       373 ~l~~~~~~~g~~~~~~~--i~l----p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          373 KVVTFTLENEQWTKPVV--LKL----PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEEECEETTEECCCEE--ECC----CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEEECCCCceEEEec--cCC----CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence             6677766553 11110  111    112346666666766544 44332   3567777765

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=88.79  E-value=15  Score=34.10  Aligned_cols=195  Identities=12%  Similarity=0.130  Sum_probs=107.2

Q ss_pred             cCCCEEEEEECCCcEEEEECCCC----ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEEC---C------CCeE
Q 011457          269 PTIDILLTGGRDSVCRVWDIRTK----MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDL---R------YGKT  335 (485)
Q Consensus       269 ~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~---~------~~~~  335 (485)
                      |+..++++.+.+|.|+--.+...    .....+. ..+.+..+........|+..+..|.+.-+..   .      .|.+
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~   81 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence            56678889999999987765421    1111233 2344555544555667777888888666644   2      2332


Q ss_pred             EeEe-cc-CCCceEEE-EECC--CCCEEEEEcCCC-EEEEECCC--------CceeeeeccCCcccEEEEEeCCCCeEEE
Q 011457          336 MLTL-TH-HKKSVRAM-ALHP--TEDCFASASAEN-IKKFNLPK--------GEFLHNMLSQQKTIINSMAVNEEGVLAT  401 (485)
Q Consensus       336 ~~~~-~~-~~~~v~~l-~~~p--~~~~l~~~~~~~-i~i~d~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~l~s  401 (485)
                      +..+ .. ....|.++ ...+  ++.+++..+..+ ++...+..        |.....+ ...+..+.......+..++.
T Consensus        82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l-~e~d~lv~~~~~~~~~~i~l  160 (323)
T 1wp5_A           82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDVHLTDGMNELFL  160 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEEEEECSCSEEEE
T ss_pred             hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEe-CCCCEEEEEEEeCCCCEEEE
Confidence            2221 11 22345554 3332  255677677776 77776632        2222222 22234444444554558888


Q ss_pred             EeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEEEECCCcEEEecCCC
Q 011457          402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVTCEADKTIKMWREDE  465 (485)
Q Consensus       402 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s~~~Dg~I~iW~~~~  465 (485)
                      .+.+|.+..++...-........-.....+.....|.++..-.++. .|++.+..|..+..+++.
T Consensus       161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            9999999999875422221111111111233445566665444455 788889999988877765

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=88.41  E-value=17  Score=34.43  Aligned_cols=240  Identities=11%  Similarity=0.061  Sum_probs=114.5

Q ss_pred             CcceEEEEEcc--CCCEEEEEeCCC----eEEEEECCCCceEEEEcc--------------cccCEEEEEEcCC--CCEE
Q 011457          175 LGWVRSVAFDH--SNTWFCTGSADR----TIKIWDVAKGTLKLTLTG--------------HIEQVRGLAVSSK--HTYM  232 (485)
Q Consensus       175 ~~~V~~l~~sp--~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~--------------h~~~V~~l~~s~~--~~~l  232 (485)
                      ...|.+|+++|  .+.+ ..++..|    .|...+ ..++.-..+..              ....|.++++.|.  ...|
T Consensus        54 ~~~v~~i~~dp~~~~~l-~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERM-LMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCE-EEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred             CCceEEEEECCCCCCeE-EEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence            35699999998  4444 4444444    343332 23332222211              1125778999862  4556


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEecc-------------------cCCceEEEEEecC-CCEEEEEECCCcEEEEECCCCc
Q 011457          233 FSAGDDKQVKCWDLEQNKVIRSYHG-------------------HLSGVYCLGLHPT-IDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       233 ~s~~~dg~V~iwd~~~~~~~~~~~~-------------------h~~~v~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      +.++..+.|...+ +.++.-..+..                   ....+.+|.+.|. .+.|+.+..++.|...+ ..++
T Consensus       132 ~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~  209 (394)
T 3b7f_A          132 YAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT  209 (394)
T ss_dssp             EEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS
T ss_pred             EEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC
Confidence            6666666555543 22332222211                   1235788999873 44555555555444432 2232


Q ss_pred             eEEEecc-C------------CccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEecc--CC---CceEEEEECC
Q 011457          293 QIFALAG-H------------DNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTH--HK---KSVRAMALHP  353 (485)
Q Consensus       293 ~~~~~~~-~------------~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~---~~v~~l~~~p  353 (485)
                      .-..+.. .            ...+.++.+.+. ...|+++...+ |...+ ..++.-..+..  ..   ..+.++.++|
T Consensus       210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p  287 (394)
T 3b7f_A          210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQ  287 (394)
T ss_dssp             SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred             CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECC
Confidence            2222211 0            134888999886 35777776554 44443 22333333221  11   2356788876


Q ss_pred             C--CCEEEEEc-----------CCCEEEEECCC-Cceeeeecc---CCcc----cEEEEEeCCCC--eEEEEeCCCcEEE
Q 011457          354 T--EDCFASAS-----------AENIKKFNLPK-GEFLHNMLS---QQKT----IINSMAVNEEG--VLATGGDNGSLWF  410 (485)
Q Consensus       354 ~--~~~l~~~~-----------~~~i~i~d~~~-~~~~~~~~~---~~~~----~i~~~~~~~~~--~l~sg~~dg~I~i  410 (485)
                      .  +.+++...           .....+|...+ |+.-..+..   ....    ....++++|..  .|+.++.++.|..
T Consensus       288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~  367 (394)
T 3b7f_A          288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA  367 (394)
T ss_dssp             SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred             CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            3  34444321           11234454443 232222211   1110    12356776643  5777776666654


Q ss_pred             EeCCCCccccc
Q 011457          411 WDWKSGHNFQQ  421 (485)
Q Consensus       411 wd~~~~~~~~~  421 (485)
                      - ...|+....
T Consensus       368 S-~D~G~tW~~  377 (394)
T 3b7f_A          368 S-ADEGEHWQC  377 (394)
T ss_dssp             E-SSTTSBCEE
T ss_pred             E-CCCCCCceE
Confidence            3 234444433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=88.32  E-value=15  Score=33.64  Aligned_cols=242  Identities=8%  Similarity=0.029  Sum_probs=128.2

Q ss_pred             cCCCEEEEEe--CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC--------------CcEEEEECCC
Q 011457          185 HSNTWFCTGS--ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--------------KQVKCWDLEQ  248 (485)
Q Consensus       185 p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--------------g~V~iwd~~~  248 (485)
                      .++.+++...  .++.|...+..... ...+...    .+--+++++.+|+-+...              ..|+..+++.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4566665553  35667777754333 3333322    134557888888766542              4677788876


Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEE--C--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC-CC
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGG--R--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH-DS  323 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~--~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~-dg  323 (485)
                      ++...... .  .  +..|+++++.|+-..  .  +..|...++.... ...+..+..    ..++++++.|+-.+. ..
T Consensus        98 ~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A           98 HGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             CCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred             CcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence            65333222 1  1  236777888888776  3  3456666665433 344443332    345667888776554 67


Q ss_pred             CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-C--EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eE
Q 011457          324 TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-N--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VL  399 (485)
Q Consensus       324 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  399 (485)
                      .|...++..+.....+..   ... ..++|++.+|+-...+ +  |..-++..... ..+. .  ..+..  +++++ +|
T Consensus       168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-~--~~~~~--~~~~g~~I  237 (302)
T 3s25_A          168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT-E--ANIEH--YNVYGSLI  237 (302)
T ss_dssp             CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS-C--SCEEE--EEEETTEE
T ss_pred             eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe-C--CCcce--EEECCCEE
Confidence            888888876654433332   222 3356888877765433 2  66666654442 2222 1  22333  55555 44


Q ss_pred             EEE--eCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE-CCCcEEEecCC
Q 011457          400 ATG--GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE-ADKTIKMWRED  464 (485)
Q Consensus       400 ~sg--~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~-~Dg~I~iW~~~  464 (485)
                      .-+  ...+.|..-++..... ..+..          ..+..  +++.+.+|+-.. ..+.|..-+.+
T Consensus       238 y~~~~~~~~~i~~~~~DG~~r-~~l~~----------~~~~~--i~i~~d~Iy~td~~~~~i~~~~~d  292 (302)
T 3s25_A          238 FYQRGGDNPALCVVKNDGTGF-KELAK----------GEFCN--INVTSQYVYFTDFVSNKEYCTSTQ  292 (302)
T ss_dssp             EEEECSSSCEEEEEETTSCCC-EEEEE----------SCEEE--EEECSSEEEEEETTTCCEEEEESS
T ss_pred             EEEECCCCcEEEEEECCCCcc-EEeeC----------Cccce--EEEeCCEEEEEECCCCeEEEEECC
Confidence            433  2345677777654332 22211          11333  344566766554 34555544443

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=85.96  E-value=21  Score=32.84  Aligned_cols=186  Identities=12%  Similarity=0.082  Sum_probs=105.0

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCee-------EE--EecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCC------
Q 011457          227 SKHTYMFSAGDDKQVKCWDLEQNKV-------IR--SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK------  291 (485)
Q Consensus       227 ~~~~~l~s~~~dg~V~iwd~~~~~~-------~~--~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~------  291 (485)
                      ++..++++.+.+|.|+--.+...+.       +.  .+. -.+.+..+......+.++..+..|.++-+....-      
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            5677889999999999887654321       11  122 2244555555556677888899998877765321      


Q ss_pred             ---ce---EEEeccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECCCC
Q 011457          292 ---MQ---IFALAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHPTE  355 (485)
Q Consensus       292 ---~~---~~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~  355 (485)
                         ..   ...+. ....|.++...+   ++.+|+..+.+|.++...+..       |.....+.. ...+..+.....+
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence               11   11122 223455554332   466888899999999987742       333333433 3445555444444


Q ss_pred             CEEEEEcCCC-EEEEECCCC-------ceeeeeccCCcccEEEEE-eCCCCeEEEEeCCCcEEEEeCCC
Q 011457          356 DCFASASAEN-IKKFNLPKG-------EFLHNMLSQQKTIINSMA-VNEEGVLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       356 ~~l~~~~~~~-i~i~d~~~~-------~~~~~~~~~~~~~i~~~~-~~~~~~l~sg~~dg~I~iwd~~~  415 (485)
                      ..++..+.++ ...+....-       .-+..+....+..+..+. +.++..+++.+.+|.....++..
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            4455555554 667765431       111111112234444444 44444788899999999988754

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=85.08  E-value=26  Score=33.13  Aligned_cols=144  Identities=16%  Similarity=0.102  Sum_probs=83.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCC---------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC---C--
Q 011457          225 VSSKHTYMFSAGDDKQVKCWDLEQ---------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR---T--  290 (485)
Q Consensus       225 ~s~~~~~l~s~~~dg~V~iwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~--  290 (485)
                      +-++..++++.+.+|.|+--.+..         +..-..++ ....+..+......+.|+..+..|.++-+...   .  
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~   81 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG   81 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence            346788999999999999875532         12223333 34566666666666778888889987766542   2  


Q ss_pred             ----CceEE---EeccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCC-------CeEEeEeccCCCceEEEEECC
Q 011457          291 ----KMQIF---ALAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRY-------GKTMLTLTHHKKSVRAMALHP  353 (485)
Q Consensus       291 ----~~~~~---~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p  353 (485)
                          |..+.   .+. ....|.++....   .+.+|+.++..|.++...+..       |.....+.. ...+..+....
T Consensus        82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~  159 (370)
T 3l6v_A           82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD  159 (370)
T ss_dssp             TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred             cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence                11111   122 234555554432   456899999999999987643       222223333 33444444433


Q ss_pred             CCCEEEEEcCCC-EEEEEC
Q 011457          354 TEDCFASASAEN-IKKFNL  371 (485)
Q Consensus       354 ~~~~l~~~~~~~-i~i~d~  371 (485)
                      ....++..+..+ +..|..
T Consensus       160 ~~~~i~l~T~~G~~irf~~  178 (370)
T 3l6v_A          160 GDRDVLLFASNGKTVRFGE  178 (370)
T ss_dssp             SCCEEEEEETTSEEEEEEG
T ss_pred             CCceEEEEeCCCeEEEEEc
Confidence            444444444444 666654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.74  E-value=22  Score=38.56  Aligned_cols=38  Identities=16%  Similarity=0.222  Sum_probs=33.8

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35778888888899999999999999999999998875

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=84.34  E-value=29  Score=32.98  Aligned_cols=187  Identities=10%  Similarity=0.084  Sum_probs=103.3

Q ss_pred             CcEEEEECCCC--eeEEEecc------cCCceEEEEEe---cC----CCEEEEEE-CCCcEEEEECCCCceEEEeccCCc
Q 011457          239 KQVKCWDLEQN--KVIRSYHG------HLSGVYCLGLH---PT----IDILLTGG-RDSVCRVWDIRTKMQIFALAGHDN  302 (485)
Q Consensus       239 g~V~iwd~~~~--~~~~~~~~------h~~~v~~l~~~---~~----~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~  302 (485)
                      -+|.+||+.++  +.++.+.-      ..+.+..+.+.   +.    +.++.... ..+-|.|+|+.+++..+.+  |..
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~  200 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT  200 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC
Confidence            36778888888  88877742      23457788887   22    23444444 4678999999998877655  321


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCC----CCEEEEEcCCCEEEEECC-----C
Q 011457          303 TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT----EDCFASASAENIKKFNLP-----K  373 (485)
Q Consensus       303 ~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~----~~~l~~~~~~~i~i~d~~-----~  373 (485)
                            +.|+....++  -+|.-.-|              ...+..|+++|+    ++.|.-..-.+-.+|.++     +
T Consensus       201 ------~~pd~~~~~~--i~G~~~~~--------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~  258 (381)
T 3q6k_A          201 ------FKAERPTKFD--YGGKEYEF--------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQ  258 (381)
T ss_dssp             ------GSCCSCEEEE--ETTEEEEE--------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSS
T ss_pred             ------CccccCcceE--ECCEEeEe--------------ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhC
Confidence                  2343111111  12221111              345889999998    777776666665555443     2


Q ss_pred             Cce---eeeeccCC--cccEEEEEeC-CCC-eEEEEeCCCcEEEEeCCC-CcccccceeeeccCCCCCCccEEEEEEccC
Q 011457          374 GEF---LHNMLSQQ--KTIINSMAVN-EEG-VLATGGDNGSLWFWDWKS-GHNFQQAQTIVQPGSLDSEAGIYALSYDVT  445 (485)
Q Consensus       374 ~~~---~~~~~~~~--~~~i~~~~~~-~~~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  445 (485)
                      ...   +.. ....  ...-..++.. .+| ++++--..+.|..|+..+ .-.........+..   .-.....+.+..+
T Consensus       259 ~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~---~l~~pd~~~i~~~  334 (381)
T 3q6k_A          259 KGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS---RFVFGTDISVDSK  334 (381)
T ss_dssp             TTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT---TCCSEEEEEECTT
T ss_pred             cchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC---CccccCeEEECCC
Confidence            211   111 1111  1334456665 667 555556678899999875 22112222222211   1224677778777


Q ss_pred             CCEEEEEE
Q 011457          446 GSRLVTCE  453 (485)
Q Consensus       446 g~~L~s~~  453 (485)
                      |.+.+...
T Consensus       335 g~Lwv~sn  342 (381)
T 3q6k_A          335 GGLWFMSN  342 (381)
T ss_dssp             SCEEEEEC
T ss_pred             CeEEEEEC
Confidence            76555553

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=83.69  E-value=25  Score=31.72  Aligned_cols=193  Identities=12%  Similarity=0.131  Sum_probs=106.6

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEE---CCCCeeEEEecccCCceEEEEEec--CCCEEEEEECCCcEEEEECCCCc
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWD---LEQNKVIRSYHGHLSGVYCLGLHP--TIDILLTGGRDSVCRVWDIRTKM  292 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd---~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~  292 (485)
                      +.+..+.......+|+.-+.+|.++--.   +........+. ....|..+.. +  +..+++..+.+|.++-..+....
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~  101 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE  101 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence            3444444444455566666677665433   22221100133 3455655544 4  46789999999999999876532


Q ss_pred             ------eEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCC---------CeEEeEeccCCCceEEEEECCCCCE
Q 011457          293 ------QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY---------GKTMLTLTHHKKSVRAMALHPTEDC  357 (485)
Q Consensus       293 ------~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~  357 (485)
                            ....+. ..+.+..+........++..+.+|.+..++...         |.....+.. ...|.++...+++..
T Consensus       102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~  179 (276)
T 3no0_A          102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY  179 (276)
T ss_dssp             TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred             hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence                  112222 234566665555666888899999988887532         222222322 245555554445555


Q ss_pred             EEEEcCCC-EEEEECCC-------CceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEE--EeCCC
Q 011457          358 FASASAEN-IKKFNLPK-------GEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWF--WDWKS  415 (485)
Q Consensus       358 l~~~~~~~-i~i~d~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~i--wd~~~  415 (485)
                      ++..+..+ ++...+..       ++-+..+ ......+.......+..++..+.+|.+..  ++...
T Consensus       180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence            55555555 77776532       2222332 22233343334444447778888899888  87643

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=83.68  E-value=45  Score=34.70  Aligned_cols=234  Identities=10%  Similarity=0.093  Sum_probs=120.1

Q ss_pred             eEEEE-EccCCCEEEEEeC-C----CeEEEEECCCCceEE-EEc-cccc------CEEEEEEcCCCCEEEEE--------
Q 011457          178 VRSVA-FDHSNTWFCTGSA-D----RTIKIWDVAKGTLKL-TLT-GHIE------QVRGLAVSSKHTYMFSA--------  235 (485)
Q Consensus       178 V~~l~-~sp~~~~l~tgs~-d----g~I~iwd~~~~~~~~-~~~-~h~~------~V~~l~~s~~~~~l~s~--------  235 (485)
                      ...+. ++|++++++.+-. .    ..|+++|+.+++.+. .+. .-..      ....++|..++.++++.        
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            34455 7889887765432 2    479999999988653 111 0000      01334776444444432        


Q ss_pred             --eCCCcEEEEECCCCe--eEEEecccCCce-EEEEEecCCC-----EEEEEEC---CCcEEEEECCCC-ceEEEeccCC
Q 011457          236 --GDDKQVKCWDLEQNK--VIRSYHGHLSGV-YCLGLHPTID-----ILLTGGR---DSVCRVWDIRTK-MQIFALAGHD  301 (485)
Q Consensus       236 --~~dg~V~iwd~~~~~--~~~~~~~h~~~v-~~l~~~~~~~-----~l~sg~~---dg~i~iwd~~~~-~~~~~~~~~~  301 (485)
                        +....|+.|.+-+..  -...+.+....+ .....++++.     .+++.+.   ...+.+.|.... .....+....
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  290 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS  290 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence              123578888876542  222333322332 2344556655     2444332   245666676531 1223332222


Q ss_pred             ccEEEEEEcCCCCEEEEE----------eCCCCEEEEECCCCe-------EEeE-ecc-CCCceEEEEECCCCCEEEEEc
Q 011457          302 NTVCSVFTRPTDPQVVTG----------SHDSTIKFWDLRYGK-------TMLT-LTH-HKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       302 ~~v~~l~~~~~~~~l~s~----------s~dg~I~iwd~~~~~-------~~~~-~~~-~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      ..  .+....++.+++..          ...+.|...|+..+.       .... +.. ....+..+.+..+ .++++..
T Consensus       291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred             cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence            21  12223344444422          246789999987632       1222 322 3446778888876 5555555


Q ss_pred             CCC---EEEEECCCCc-eeee-eccCCcccEEEEEeCCCC--eEEEEeC---CCcEEEEeCC
Q 011457          363 AEN---IKKFNLPKGE-FLHN-MLSQQKTIINSMAVNEEG--VLATGGD---NGSLWFWDWK  414 (485)
Q Consensus       363 ~~~---i~i~d~~~~~-~~~~-~~~~~~~~i~~~~~~~~~--~l~sg~~---dg~I~iwd~~  414 (485)
                      .++   +.++++.++. .... +.......+......+++  ++++.++   -+.++.+|+.
T Consensus       368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            554   7788876664 2222 212223456666666665  4444443   3678888876

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=83.45  E-value=28  Score=32.19  Aligned_cols=236  Identities=11%  Similarity=0.051  Sum_probs=122.5

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCC----eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECC---C------Cce
Q 011457          227 SKHTYMFSAGDDKQVKCWDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIR---T------KMQ  293 (485)
Q Consensus       227 ~~~~~l~s~~~dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~---~------~~~  293 (485)
                      |+..++++.+.+|.|+--.+...    .....++. .+.+..+......+.|+..+..|.++-+...   .      |..
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~   81 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence            56778889999999998765421    11112332 2445555555566778888889987666542   2      221


Q ss_pred             E---EEeccCCccEEEEEEcC---CCCEEEEEeCCCCEEEEECCC--------CeEEeEeccCCCceEEEEECCCCCEEE
Q 011457          294 I---FALAGHDNTVCSVFTRP---TDPQVVTGSHDSTIKFWDLRY--------GKTMLTLTHHKKSVRAMALHPTEDCFA  359 (485)
Q Consensus       294 ~---~~~~~~~~~v~~l~~~~---~~~~l~s~s~dg~I~iwd~~~--------~~~~~~~~~~~~~v~~l~~~p~~~~l~  359 (485)
                      +   ..+. ....|.++...+   ++.+++..+.+|.++...+..        +.....+... ..+..+........++
T Consensus        82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~  159 (323)
T 1wp5_A           82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF  159 (323)
T ss_dssp             GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred             hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence            1   1122 233455543333   256899999999999987742        2222233322 4444444443444444


Q ss_pred             EEcCCC-EEEEECCCCc-------eeeeeccCCcccEEEE-EeCCCC-eEEEEeCCCcEEEEeCCCCccccc-ceeeecc
Q 011457          360 SASAEN-IKKFNLPKGE-------FLHNMLSQQKTIINSM-AVNEEG-VLATGGDNGSLWFWDWKSGHNFQQ-AQTIVQP  428 (485)
Q Consensus       360 ~~~~~~-i~i~d~~~~~-------~~~~~~~~~~~~i~~~-~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~  428 (485)
                      ..+.++ +..+....-.       -+.-+....+..|..+ .+.++. .+++.+..|..+..++..-..... -......
T Consensus       160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~  239 (323)
T 1wp5_A          160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL  239 (323)
T ss_dssp             EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred             EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence            444444 6667653211       1111111223334444 444555 688889999988877654211110 0000001


Q ss_pred             CCC-CCCccEEEEEEccCCCEEEEEECCCcEEEecCCC
Q 011457          429 GSL-DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       429 ~~~-~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~  465 (485)
                      ... .....+..+....++..++..+..|.+.-..+++
T Consensus       240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~  277 (323)
T 1wp5_A          240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             CCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             eecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence            011 1122455433333345677777888877666654

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=83.40  E-value=27  Score=31.99  Aligned_cols=227  Identities=9%  Similarity=0.050  Sum_probs=123.1

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceEE---------EEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC---CC----
Q 011457          185 HSNTWFCTGSADRTIKIWDVAKGTLKL---------TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL---EQ----  248 (485)
Q Consensus       185 p~~~~l~tgs~dg~I~iwd~~~~~~~~---------~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~---~~----  248 (485)
                      |+..++++.+.+|.|+--.+.+.+...         .+. ..+.+..+........|+..+..|.+.-+..   ..    
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            356678889999999887765433221         122 2244445555555666777777887666544   21    


Q ss_pred             --CeeEE---EecccCCceEEEEEe---cCCCEEEEEECCCcEEEEECCCCc-------eEEEeccCCccEEEEEEcCCC
Q 011457          249 --NKVIR---SYHGHLSGVYCLGLH---PTIDILLTGGRDSVCRVWDIRTKM-------QIFALAGHDNTVCSVFTRPTD  313 (485)
Q Consensus       249 --~~~~~---~~~~h~~~v~~l~~~---~~~~~l~sg~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~~~  313 (485)
                        |..+.   .+. ....|..+...   .++.+++..+.+|.++-..+....       ....+... +.+..+......
T Consensus        80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~  157 (307)
T 1zi0_A           80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE  157 (307)
T ss_dssp             SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred             CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence              22211   122 23445555442   345689999999999998775221       11223333 455555555555


Q ss_pred             CEEEEEeCCCCEEEEECCC---------CeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCC---------
Q 011457          314 PQVVTGSHDSTIKFWDLRY---------GKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKG---------  374 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~---------  374 (485)
                      ..++..+.+|.+..++...         |.....+. ....|.++....++..++..+..+ .+..++..-         
T Consensus       158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG  236 (307)
T 1zi0_A          158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG  236 (307)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred             CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence            6788888999988887642         11112222 234566665555555566666655 666655211         


Q ss_pred             ceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~  415 (485)
                      .....+.......+......++..++..+.+|.+.-++...
T Consensus       237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            11112222223334444445555677777888877776643

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=82.12  E-value=35  Score=32.36  Aligned_cols=188  Identities=12%  Similarity=0.144  Sum_probs=110.0

Q ss_pred             CCcceEEEEEccCCCEEE--EEeC-------------CCeEEEEECCCC--ceEEEEccc------ccCEEEEEEc---C
Q 011457          174 HLGWVRSVAFDHSNTWFC--TGSA-------------DRTIKIWDVAKG--TLKLTLTGH------IEQVRGLAVS---S  227 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~--tgs~-------------dg~I~iwd~~~~--~~~~~~~~h------~~~V~~l~~s---~  227 (485)
                      +--.|..+...+.+++-+  +|-.             --.|.+||+.++  ++++++.-.      .+.+..+.+.   +
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~  164 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP  164 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence            344577777776665333  1211             126889999999  888877532      3567888887   2


Q ss_pred             C----CCEEEEEe-CCCcEEEEECCCCeeEEEecc--------------c----CCceEEEEEecC----CCEEEEEECC
Q 011457          228 K----HTYMFSAG-DDKQVKCWDLEQNKVIRSYHG--------------H----LSGVYCLGLHPT----IDILLTGGRD  280 (485)
Q Consensus       228 ~----~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~--------------h----~~~v~~l~~~~~----~~~l~sg~~d  280 (485)
                      +    +.++..+. ..+-|.++|+.+++.-+.++.              .    ...|..|+++|+    ++.|.-....
T Consensus       165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls  244 (381)
T 3q6k_A          165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS  244 (381)
T ss_dssp             TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred             CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence            2    34555443 467899999999876655421              0    236788888887    6666666555


Q ss_pred             CcEEEEECC-----CC---ceEEEeccC--CccEEEEEEc-CCCCEEEEEeCCCCEEEEECCC-C---eEEeEec--cCC
Q 011457          281 SVCRVWDIR-----TK---MQIFALAGH--DNTVCSVFTR-PTDPQVVTGSHDSTIKFWDLRY-G---KTMLTLT--HHK  343 (485)
Q Consensus       281 g~i~iwd~~-----~~---~~~~~~~~~--~~~v~~l~~~-~~~~~l~s~s~dg~I~iwd~~~-~---~~~~~~~--~~~  343 (485)
                      +. ++|.+.     ..   ..+..+-..  ...-..+++. .+|.++++--....|..|+... .   .....+.  ..-
T Consensus       245 s~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l  323 (381)
T 3q6k_A          245 AI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRF  323 (381)
T ss_dssp             CS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTC
T ss_pred             CC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCc
Confidence            42 333332     11   122222111  1234456675 5777777777888999999875 1   1122221  122


Q ss_pred             CceEEEEECCCCCEEEEEc
Q 011457          344 KSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       344 ~~v~~l~~~p~~~~l~~~~  362 (485)
                      .....+.+.++|.+.+..+
T Consensus       324 ~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          324 VFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             CSEEEEEECTTSCEEEEEC
T ss_pred             cccCeEEECCCCeEEEEEC
Confidence            3466777766666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	485
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-39
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-29
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-34
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-29
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-25
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-29
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-28
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-25
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-19
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-18
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-17
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-17
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-15
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	6e-05
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	8e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  142 bits (358), Expect = 3e-39
 Identities = 70/323 (21%), Positives = 129/323 (39%), Gaps = 29/323 (8%)

Query: 160 EWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ 219
           EW         +SGH   V  V F    +   + S D TIK+WD   G  + TL GH + 
Sbjct: 2   EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 61

Query: 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
           V+ ++       + S   D  +K WD +  + IR+ HGH   V  + + P  D +++  R
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 280 DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL 339
           D   ++W+++T   +    GH   V  V        + + S+D T++ W +   +    L
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

Query: 340 THHKKSVRAMALHPTEDCFA--------------------SASAEN-IKKFNLPKGEFLH 378
             H+  V  ++  P     +                    S S +  IK +++  G  L 
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241

Query: 379 NMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIY 438
            ++     +   +  +    + +  D+ +L  WD+K+    +             E  + 
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------AHEHFVT 293

Query: 439 ALSYDVTGSRLVTCEADKTIKMW 461
           +L +  T   +VT   D+T+K+W
Sbjct: 294 SLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (284), Expect = 7e-29
 Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 20/195 (10%)

Query: 155 KWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT 214
           K  +        C +  +GH  WVR V  +   T   + S D+T+++W VA    K  L 
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 215 GHIEQVRGLA--------------------VSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254
            H   V  ++                          ++ S   DK +K WD+     + +
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP 314
             GH + V  +  H     +L+   D   RVWD + K  +  L  H++ V S+    T P
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302

Query: 315 QVVTGSHDSTIKFWD 329
            VVTGS D T+K W+
Sbjct: 303 YVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (282), Expect = 1e-28
 Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 20/237 (8%)

Query: 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
                    +      ++C R + GH   V SV+   +     + S D+TIK+W+V  G 
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
              T TGH E VR +  +   T + S  +D+ V+ W +   +       H   V C+   
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194

Query: 269 --------------------PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF 308
                                    LL+G RD   ++WD+ T M +  L GHDN V  V 
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254

Query: 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN 365
                  +++ + D T++ WD +  + M TL  H+  V ++  H T     + S + 
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (261), Expect = 9e-26
 Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 23/270 (8%)

Query: 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA 224
               R + GH   V+ ++FDHS     + SAD TIK+WD        T+ GH   V  ++
Sbjct: 49  GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 108

Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
           +     ++ SA  DK +K W+++    ++++ GH   V  +  +    ++ +   D   R
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168

Query: 285 VWDIRTKMQIFALAGHDNTVCSV--------------------FTRPTDPQVVTGSHDST 324
           VW + TK     L  H + V  +                     +    P +++GS D T
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

Query: 325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ 383
           IK WD+  G  ++TL  H   VR +  H       S + +  ++ ++      +   L+ 
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-LNA 287

Query: 384 QKTIINSMAVNEEG-VLATGGDNGSLWFWD 412
            +  + S+  ++    + TG  + ++  W+
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.0 bits (219), Expect = 3e-20
 Identities = 60/266 (22%), Positives = 100/266 (37%), Gaps = 30/266 (11%)

Query: 200 KIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL 259
           K W   +   K  L+GH   V  +      + M SA +D  +K WD E     R+  GH 
Sbjct: 1   KEWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 260 SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG 319
             V  +    +  +L +   D   ++WD +    I  + GHD+ V SV   P    +V+ 
Sbjct: 60  DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHN 379
           S D TIK W+++ G  + T T H++ VR +  +      AS S +   +  +   +    
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179

Query: 380 MLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA 439
            L + + ++  ++                W  +                 S+    G   
Sbjct: 180 ELREHRHVVECIS----------------WAPES-------------SYSSISEATGSET 210

Query: 440 LSYDVTGSRLVTCEADKTIKMWREDE 465
                 G  L++   DKTIKMW    
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVST 236

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  129 bits (324), Expect = 3e-34
 Identities = 66/328 (20%), Positives = 118/328 (35%), Gaps = 15/328 (4%)

Query: 140 ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTI 199
            R     A + +I +    P      +  R + GHL  + ++ +   +    + S D  +
Sbjct: 21  ARKACADATLSQITNNID-PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79

Query: 200 KIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL 259
            IWD         +      V   A +    Y+   G D     ++L+  +        L
Sbjct: 80  IIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139

Query: 260 SG---VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV 316
           +G             + ++T   D+ C +WDI T  Q     GH   V S+   P     
Sbjct: 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199

Query: 317 VTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEF 376
           V+G+ D++ K WD+R G    T T H+  + A+   P  + FA+ S +   +    + + 
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 377 LHNMLSQQKTI--INSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDS 433
                S    I  I S++ ++ G +L  G D+ +   WD                     
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--------GH 311

Query: 434 EAGIYALSYDVTGSRLVTCEADKTIKMW 461
           +  +  L     G  + T   D  +K+W
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  114 bits (285), Expect = 8e-29
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 2/176 (1%)

Query: 156 WPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG 215
                     +     +GH G V S++       F +G+ D + K+WDV +G  + T TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 216 HIEQVRGLAVSSKHTYMFSAGDDKQVK--CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273
           H   +  +          +  DD   +      +Q  +  S+   + G+  +    +  +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 274 LLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
           LL G  D  C VWD     +   LAGHDN V  +        V TGS DS +K W+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (258), Expect = 3e-25
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 3/242 (1%)

Query: 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH 185
             +SS +++ + +   N      ++ I S +         +  R ++GH     S     
Sbjct: 94  PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFL 152

Query: 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245
            +    T S D T  +WD+  G    T TGH   V  L+++       S   D   K WD
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212

Query: 246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRV--WDIRTKMQIFALAGHDNT 303
           + +    +++ GH S +  +   P  +   TG  D+ CR+       ++  ++       
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 304 VCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA 363
           + SV    +   ++ G  D     WD         L  H   V  + +       A+ S 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

Query: 364 EN 365
           ++
Sbjct: 333 DS 334

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.3 bits (186), Expect = 7e-16
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 2/120 (1%)

Query: 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH 185
           +G  S I +       N   +   +     +                  +  + SV+F  
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN--IICGITSVSFSK 280

Query: 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245
           S      G  D    +WD  K      L GH  +V  L V+     + +   D  +K W+
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-29
 Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 50/337 (14%)

Query: 163 APWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG 222
              K  +V+ GH   V +           +GS D T+K+W    G    TL GH   V  
Sbjct: 4   GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 223 LAVSS--------------------------------------KHTYMFSAGDDKQVKCW 244
             +                                            + S   D  ++ W
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTV 304
           D+E  + +    GH++ V C  +      +++G  D + +VWD  T+  +  L GH N V
Sbjct: 123 DIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 305 CSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE 364
                +     VV+GS D++I+ WD+  G  + TLT H+     M L    +   S +A+
Sbjct: 181 Y--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNAD 236

Query: 365 N-IKKFNLPKGEFLHNMLSQQK-TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQA 422
           + +K +++  G+ L  +    K     +     +  + T  D+G++  WD K+G   +  
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

Query: 423 QTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIK 459
            T+   G   S   ++ +    T         + T +
Sbjct: 297 VTLESGG---SGGVVWRIRASNTKLVCAVGSRNGTEE 330

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (232), Expect = 9e-22
 Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 12/222 (5%)

Query: 156 WPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG 215
             R       +C  V+ GH+  VR     +      +G+ D  +K+WD    T   TL G
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175

Query: 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL 275
           H  +V  L     H  + S   D  ++ WD+E    I +  GH S    + L    +IL+
Sbjct: 176 HTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILV 231

Query: 276 TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGK 334
           +G  DS  ++WDI+T   +  L G +    +V     +    +T S D T+K WDL+ G+
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291

Query: 335 TMLTLT-----HHKKSVRAMALHPTEDCFASASAENIKKFNL 371
            +  L           V  +    T+   A  S    ++  L
Sbjct: 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 333

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 5e-19
 Identities = 51/260 (19%), Positives = 95/260 (36%), Gaps = 18/260 (6%)

Query: 202 WDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSG 261
           W   +      L GH + V    +      + S  DD  +K W     K +R+  GH  G
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 262 VYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH 321
           V+   +   I I  +  R       +    +       + +T         + +VV+GS 
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL----YGHTSTVRCMHLHEKRVVSGSR 115

Query: 322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML 381
           D+T++ WD+  G+ +  L  H  +VR +          +     +K ++      LH + 
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF-MVKVWDPETETCLHTL- 173

Query: 382 SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALS 441
            Q  T        +   + +G  + S+  WD ++G+            S           
Sbjct: 174 -QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS----------G 222

Query: 442 YDVTGSRLVTCEADKTIKMW 461
            ++  + LV+  AD T+K+W
Sbjct: 223 MELKDNILVSGNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 11/98 (11%)

Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-----G 215
                +  +  + H   V  + F+ +  +  T S D T+K+WD+  G     L      G
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303

Query: 216 HIEQVRGLAVSSKHTYMFSAGDDK----QVKCWDLEQN 249
               V  +  S+          +     ++   D + +
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (280), Expect = 7e-28
 Identities = 69/328 (21%), Positives = 123/328 (37%), Gaps = 41/328 (12%)

Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI--------------- 217
            H   V  V F +   +  TG  ++T +++ V+ G+L   L+                  
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 218 ---EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL 274
                +R +  S    ++ +  +D+ ++ WD+E  K++    GH   +Y L   P+ D L
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 275 LTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK 334
           ++G  D   R+WD+RT      L+  D       +      +  GS D  ++ WD   G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 335 TMLTL-------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLS---- 382
            +  L       T HK SV ++          S S +  +K +NL       +  +    
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 383 -------QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE 434
                    K  + S+A  +    + +G  +  + FWD KSG+     Q      S+ S 
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG--HRNSVISV 356

Query: 435 AGIYALSYDVTGSRLVTCEADKTIKMWR 462
           A     S     +   T   D   ++W+
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.0 bits (224), Expect = 2e-20
 Identities = 64/288 (22%), Positives = 103/288 (35%), Gaps = 28/288 (9%)

Query: 154 SKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
           S                      ++RSV F     +  TG+ DR I+IWD+    + + L
Sbjct: 100 SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDI 273
            GH + +  L        + S   D+ V+ WDL   +   +                   
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 274 LLTGGRDSVCRVWDIRT-------KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK 326
           +  G  D   RVWD  T         +  +  GH ++V SV        VV+GS D ++K
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 327 FWDLRYGKT------------MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPK 373
            W+L+                 +T   HK  V ++A    ++   S S +  +  ++   
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Query: 374 GEFLHNMLSQQKTIINSMAVN-------EEGVLATGGDNGSLWFWDWK 414
           G  L  ML   +  + S+AV        E  V ATG  +     W +K
Sbjct: 340 GNPLL-MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.0 bits (224), Expect = 2e-20
 Identities = 60/279 (21%), Positives = 103/279 (36%), Gaps = 29/279 (10%)

Query: 112 GPSAQPKGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI 171
             +  P+ LN   +      I S   S +     +   +R+   W               
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-- 161

Query: 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY 231
             H   + S+ +  S     +GS DRT++IWD+  G   LTL+                Y
Sbjct: 162 --HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 232 MFSAGDDKQVKCWDLEQNKVIRSYH-------GHLSGVYCLGLHPTIDILLTGGRDSVCR 284
           + +   D+ V+ WD E   ++           GH   VY +        +++G  D   +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 285 VWDIRTKMQIFALAG------------HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332
           +W+++                      H + V SV T   D  +++GS D  + FWD + 
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Query: 333 GKTMLTLTHHKKSVRAMA------LHPTEDCFASASAEN 365
           G  +L L  H+ SV ++A      L P  + FA+ S + 
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.8 bits (213), Expect = 4e-19
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 151 RIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK 210
           R+                   +GH   V SV F        +GS DR++K+W++     K
Sbjct: 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289

Query: 211 ------------LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH 258
                       +T  GH + V  +A +    Y+ S   D+ V  WD +    +    GH
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349

Query: 259 LSGVYCLG------LHPTIDILLTGGRDSVCRVWDIR 289
            + V  +       L P  ++  TG  D   R+W  +
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 4e-14
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 136 SASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSA 195
           S S +R++    +         +        C     GH  +V SVA   ++ +  +GS 
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNS--GTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328

Query: 196 DRTIKIWDVAKGTLKLTLTGHIEQVRGLAV------SSKHTYMFSAGDDKQVKCWDLEQ 248
           DR +  WD   G   L L GH   V  +AV        ++    +   D + + W  ++
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 9e-25
 Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 15/293 (5%)

Query: 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTY 231
           S     V  + +D  +    +G  D TIKIWD      K  LTGH   V    +  ++  
Sbjct: 12  SETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV----LCLQYDE 65

Query: 232 MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK 291
                          + N               L L     +++T  +D    VWD+ + 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 292 MQI-FALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA 350
             I        +          D  +V+ S D TIK W+    + + TL  HK+ +  + 
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 351 LHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLW 409
                    S S++N I+ +++  G  L  +  +    +      +   + +G  +G + 
Sbjct: 186 YRD--RLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRFDNKRIVSGAYDGKIK 241

Query: 410 FWDWKSGHNFQQAQTIVQPGSLDS-EAGIYALSYDVTGSRLVTCEADKTIKMW 461
            WD  +  + +     +   +L      ++ L +D    ++V+   D TI +W
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 1e-17
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 17/179 (9%)

Query: 160 EWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ 219
                    RV+ GH   V  V FD    +  + S DRTIK+W+ +      TL GH   
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180

Query: 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR 279
           +  L    +   + S   D  ++ WD+E    +R   GH   V C+        +++G  
Sbjct: 181 IACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAY 236

Query: 280 DSVCRVWDIRTKMQIFA---------LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
           D   +VWD+   +   A         L  H   V  +  +  + Q+V+ SHD TI  WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 9e-09
 Identities = 31/212 (14%), Positives = 65/212 (30%), Gaps = 14/212 (6%)

Query: 250 KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFT 309
           + I        GVYC  L      +++G RD+  ++WD  T      L GH  +V  +  
Sbjct: 6   QRIHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 310 RPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKF 369
                   +      +   +       L                   C    S   +   
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSI-AVWDM 122

Query: 370 NLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPG 429
             P    L  +L   +  +N +  +++ +++  GD  ++  W+  +    +      +  
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD-RTIKVWNTSTCEFVRTLNGHKRG- 180

Query: 430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
                              +V+  +D TI++W
Sbjct: 181 ---------IACLQYRDRLVVSGSSDNTIRLW 203

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 158 RPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD 203
            P   A   C R +  H G V  + FD       + S D TI IWD
Sbjct: 250 DPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.1 bits (224), Expect = 1e-20
 Identities = 38/312 (12%), Positives = 80/312 (25%), Gaps = 26/312 (8%)

Query: 172 SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKH 229
           S  +  +   A++   T       +  + I++ +         L  H  QV G+  +   
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 230 TYMFSAGDDKQVKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287
             + + G D+    W L+    K             C+   P       G    V  +  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 288 IRT----KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-------- 335
                   +         +TV S+   P    +  GS D   + +     +         
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 336 ----------MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQK 385
                     M   +     V  +         A  S ++         +     L+ + 
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 386 TIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
             + ++    E  L   G +     + + S          +      S+ G+ A      
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 303

Query: 446 GSRLVTCEADKT 457
             +  + E    
Sbjct: 304 LDKKASSEGSAA 315

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.8 bits (187), Expect = 8e-16
 Identities = 49/323 (15%), Positives = 83/323 (25%), Gaps = 33/323 (10%)

Query: 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK--LTLTGHIEQVRG 222
           W     +  H G V  V +   +    T   DR   +W +   T K  L +       R 
Sbjct: 41  WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100

Query: 223 LAVSSKHTYMFSAGDDKQVKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTIDILLTGG 278
           +  +            + +     EQ               S V  L  HP   +L  G 
Sbjct: 101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

Query: 279 RDSVCRVWDIRTK------------------MQIFALAGHDNTVCSVFTRPTDPQVVTGS 320
            D  CR++    K                    +F  +     V  V       +V   S
Sbjct: 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220

Query: 321 HDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNM 380
           HDST+   D      + TL      + A+         A+        F           
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSA------ 274

Query: 381 LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYAL 440
            + + +    + V ++               D K+      A          +     ++
Sbjct: 275 -AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333

Query: 441 SYDVTG--SRLVTCEADKTIKMW 461
                   S+  T   D  + +W
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 33/193 (17%), Positives = 56/193 (29%), Gaps = 6/193 (3%)

Query: 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
           +E  P+  P        +     S   GWV  V F  + +     S D T+ + D  K  
Sbjct: 175 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234

Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
              TL      +  +   ++ +   +AG D     +  +      S+ G L         
Sbjct: 235 AVATLASETLPLLAVTFITESSL-VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 293

Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDP----QVVTGSHDST 324
                      D                 + H N+V  +           Q  T   D  
Sbjct: 294 GLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352

Query: 325 IKFWDLRYGKTML 337
           +  WD+R  ++ L
Sbjct: 353 MSIWDVRSLESAL 365

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.0 bits (146), Expect = 8e-11
 Identities = 33/246 (13%), Positives = 72/246 (29%), Gaps = 20/246 (8%)

Query: 254 SYHG-HLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTK--MQIFALAGHDNTVCSVFTR 310
           +YH   +  + C   +     +     +    +++      +Q+  L  H+  V  V   
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 311 PTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFN 370
           P   ++VT   D     W L+      TL   + +  A  +    +    A     +  +
Sbjct: 61  PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120

Query: 371 L-------PKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG------- 416
           +             H     + T+++        +LA G  +     +            
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180

Query: 417 ---HNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473
                 +     +   S  S   ++ + +   GSR+     D T+ +   D+     T  
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240

Query: 474 LNFKPP 479
               P 
Sbjct: 241 SETLPL 246

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 33/288 (11%), Positives = 72/288 (25%), Gaps = 57/288 (19%)

Query: 147 AIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206
               R+ S     + +  W C  +       V S+ +  ++     GS D   +I+    
Sbjct: 113 GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172

Query: 207 GTLKL------------------TLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ 248
             ++                     +     V G+  S+  + +     D  V   D ++
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 232

Query: 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF 308
              + +       +  +        L+  G D    ++   +     +  G  +      
Sbjct: 233 KMAVATLASETLPLLAVTFITE-SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS 291

Query: 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK 368
            R    +    + D              L  + HK SV  +++                 
Sbjct: 292 QRGLTARERFQNLDKKASSEGSAAAGAGL-DSLHKNSVSQISVLSGGK------------ 338

Query: 369 FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG 416
                                     +     T G +G +  WD +S 
Sbjct: 339 -------------------------AKCSQFCTTGMDGGMSIWDVRSL 361

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 85.4 bits (209), Expect = 4e-19
 Identities = 35/301 (11%), Positives = 85/301 (28%), Gaps = 11/301 (3%)

Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLA 224
              +V  GH   + +++         +  A+  I  WD++ G         H   + G+ 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
            +SK      + DD  +K      + V  S                              
Sbjct: 63  TTSKGDLFTVSWDD-HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344
           +              ++++  ++        V        +          + T+ H  +
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 345 SVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVN---EEGVLAT 401
                  +      A+  +  +  +++     L +  S          V+   +   LAT
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 402 GGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
           G  + S+  W+         +   +      + + + ++ +    + +V+   D  IK W
Sbjct: 242 GSLDNSVIVWNMNKP-----SDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFW 295

Query: 462 R 462
            
Sbjct: 296 N 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (128), Expect = 1e-08
 Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 6/183 (3%)

Query: 156 WPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG 215
                                    VA  +   +   G  D  + ++ ++  ++    T 
Sbjct: 117 ACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176

Query: 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKC----WDLEQNKVIRSYHGHLSGVYCLGLHPTI 271
                      S +     A D  +        +  +     S+  H + V C+   P  
Sbjct: 177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 236

Query: 272 DILLTGGRDSVCRVWDIRT--KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWD 329
             L TG  D+   VW++       I     H  +  +      +  +V+   DS IKFW+
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

Query: 330 LRY 332
           + +
Sbjct: 297 VPF 299

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 3e-04
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT- 340
              V +        +   H   V  V   P + ++ TGS D+++  W++        +  
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 341 --HHKKSVRAMALHPTEDCFASASAEN-IKKFNLP 372
             H   SV ++     E    SA  ++ IK +N+P
Sbjct: 265 GAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP 298

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 84.1 bits (206), Expect = 3e-18
 Identities = 34/333 (10%), Positives = 78/333 (23%), Gaps = 41/333 (12%)

Query: 173 GHLGWVRSVAFDHSNTWFCTGSAD--RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT 230
                +R V                   + I+D   G  +     ++  V  + V     
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGK 98

Query: 231 YMFSAGD----------DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
           +   A D            +    +  +  +I  +    +  +     P       G   
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM---- 336
               V+D+  +    A    ++   +         +   S+ S     D           
Sbjct: 159 QAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 337 ---LTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKT------- 386
                +     S     L P      +   +    +       +     +          
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 387 IINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVT 445
           I +     E         + G L  +D K+           +   + +      LS D  
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----------KVTEVKNNLTDLRLSAD-- 325

Query: 446 GSRLVTCEADKTIKMWREDETATPETHPLNFKP 478
              ++  + D  I  +  ++     T   + +P
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 156 WPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG 215
            P       ++    +   +             ++        +  +DV        +T 
Sbjct: 257 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTE 312

Query: 216 HIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS 254
               +  L +S+    +    DD ++  + LE+ +  R+
Sbjct: 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 32/297 (10%), Positives = 72/297 (24%), Gaps = 22/297 (7%)

Query: 194 SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD--KQVKCWDLEQNKV 251
            +     I DV+     +       ++R +         F  G      +  +D    K 
Sbjct: 21  VSRGQAFIQDVSGT--YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA 78

Query: 252 ---------IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDN 302
                    + +     +G + +  +   +I+          V +   +  I      DN
Sbjct: 79  EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN 138

Query: 303 TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS 362
           +    +  P       G     I  +D+   K +   T       A A           S
Sbjct: 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS 197

Query: 363 AEN-IKKFNLPKGEFLHNMLSQQKTI------INSMAVNEEGVLATGGDNGSLWFWDWKS 415
             +     +     F   ++S+   I       N   +    + +  G+      +   S
Sbjct: 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257

Query: 416 GHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETH 472
             N       +      S        +    +          +  + + +T      
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY-DVKTRKVTEV 313

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 5/45 (11%), Positives = 13/45 (28%)

Query: 169 RVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL 213
           R ++     +  +              D  I  + + K   + T+
Sbjct: 308 RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (202), Expect = 6e-18
 Identities = 36/295 (12%), Positives = 77/295 (26%), Gaps = 16/295 (5%)

Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLK-----LTLTGHIEQVRGLAVSS 227
            H   V +V   +      TG     +K+WD++    K     L        +R   +  
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 228 KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD 287
               +   G+   +  WDL             S   C  L  + D  +     S   +  
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKKSV 346
                Q        +T  +     ++      +             +      H     +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 347 RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNG 406
            ++   PT +  A     +  +         + +   +  +++           + G + 
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW 461
            L  W    G +  Q             + + +    V    +VT   DK   ++
Sbjct: 288 LLNAWRTPYGASIFQ---------SKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 9e-15
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 3/184 (1%)

Query: 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
                               R   GH      +   +  T   TG  D T++ WD+ +G 
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216

Query: 209 LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH 268
                     Q+  L       ++    +   V+   + +    + +  H S V  L   
Sbjct: 217 QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFA 274

Query: 269 PTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
                 ++ G+D++   W       IF      ++V S      D  +VTGS D     +
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 329 DLRY 332
           ++ Y
Sbjct: 334 EVIY 337

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 7e-11
 Identities = 43/250 (17%), Positives = 83/250 (33%), Gaps = 5/250 (2%)

Query: 116 QPKGLNNVGASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHL 175
               ++ +    + + I S     +             S W         K     S   
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP- 142

Query: 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA 235
               ++A    +    +  +D  I +WD+   TL     GH +    + +S+  T +++ 
Sbjct: 143 -ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201

Query: 236 GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295
           G D  V+ WD  +       H   S ++ LG  PT + L  G   S   V  +    +  
Sbjct: 202 GLDNTVRSWD-LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260

Query: 296 ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTE 355
               H++ V S+         V+   D+ +  W   YG ++        SV +  +   +
Sbjct: 261 L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDD 318

Query: 356 DCFASASAEN 365
               + S + 
Sbjct: 319 KYIVTGSGDK 328

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 52/256 (20%), Positives = 94/256 (36%), Gaps = 8/256 (3%)

Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLT--LTGHIE 218
            +              ++RS            G    T+ IWD+A  T ++   LT    
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG 278
               LA+S      FS   D  +  WDL    ++R + GH  G  C+ +      L TGG
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 279 RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT 338
            D+  R WD+R   Q+       + + S+   PT   +  G   S ++   +        
Sbjct: 203 LDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-Q 260

Query: 339 LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG 397
           L  H+  V ++        F S   +N +  +  P G  +    S++ + + S  ++ + 
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISVDD 318

Query: 398 -VLATGGDNGSLWFWD 412
             + TG  +     ++
Sbjct: 319 KYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 36/291 (12%), Positives = 71/291 (24%), Gaps = 15/291 (5%)

Query: 178 VRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD 237
             S                  +    + +   ++    H E V  + +S+   ++++ G 
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK 71

Query: 238 DKQVKCWDLEQNKVIR-----SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292
              VK WD+                  + +    L P    L+ GG  S   +WD+    
Sbjct: 72  GC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130

Query: 293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH 352
                    +         +    V  S  S             L       +  A  + 
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190

Query: 353 PTEDCFASAS-AENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFW 411
            + D     +   +    +    E          + I S+     G              
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL--------AVG 242

Query: 412 DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
              S           +      E+ + +L +   G   V+   D  +  WR
Sbjct: 243 MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.6 bits (202), Expect = 7e-18
 Identities = 35/339 (10%), Positives = 89/339 (26%), Gaps = 41/339 (12%)

Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL---TGHIEQVRG 222
           +  ++      ++  +    S +     S D ++ ++        + L     +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 223 LAVSSKHTYMFSAGDDKQVK--CWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
                        G  +        +         +   +   C       D L+    D
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGS------HDSTIKFWDLRYGK 334
            +  V D R          + N+  +             S      ++S ++++ L   +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 335 TMLT----LTHHKKSVRAMALHPTEDCFASASAE---------------NIKKFNLPKGE 375
                        +      L   ++ +A +S +               N  K    +  
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 376 FLHNMLSQQKTIINSMAVN-EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE 434
            L+   +     +NS+  +     L T G +G +  W+ ++    +              
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN---------FAKF 292

Query: 435 AGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP 473
                +    + + L    +D T K     +  T E + 
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTNAAIDQ-TIELNA 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 8e-09
 Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 158 RPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHI 217
           +       +     +     V S+ F   + +  T  +D  I  W++             
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF- 292

Query: 218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 265
            +   + ++     +  A  D   K        + ++   + S +Y +
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYII 336

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.9 bits (200), Expect = 1e-17
 Identities = 47/356 (13%), Positives = 99/356 (27%), Gaps = 70/356 (19%)

Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKH 229
            + GH+  V +      + +  TG+ D+ I+++D       L L+GH   V  L  +   
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 230 T-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
                S     +V          +   H        +  +  I  ++TG RD+   VW +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 289 RTKMQIFALAGHDNTVCSVFTRPTDPQVV---------------------TGSHDSTIKF 327
             +  +       +      T   +P  V                     +GS+D+T+  
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS--------------------------- 360
           WD+   K +  L+ H   + +           S                           
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 361 ------------ASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSL 408
                       ++A +         ++          +           +   G     
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305

Query: 409 WFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464
             ++ +SG        +V    L     I+++++    + +   E D    +   D
Sbjct: 306 NIYNLRSGK-------LVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 3e-12
 Identities = 40/309 (12%), Positives = 87/309 (28%), Gaps = 27/309 (8%)

Query: 126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDH 185
           SG    + +   +    L + +    +     +             +     +       
Sbjct: 50  SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV---EYK 106

Query: 186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHT--------------- 230
           +  +  TGS D T+ +W + K +         +         ++                
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166

Query: 231 ------YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
                  + S   D  +  WD+ Q K +    GH   +Y           ++   D+  R
Sbjct: 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 226

Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK 344
           +WD+     ++ L GH   V  +                     +    K      HH  
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS---YHHTN 283

Query: 345 SVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGD 404
                  + +++   S S      +NL  G+ +H  + +    I S+    + ++A    
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK 343

Query: 405 NGSLWFWDW 413
           +G  +    
Sbjct: 344 DGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 4e-09
 Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 156 WPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT-LKLTLT 214
                        R  S H   + ++   + +       ++    I+++  G  +   + 
Sbjct: 262 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL 321

Query: 215 GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLE 247
              +Q+  +    K T + +   D Q     L+
Sbjct: 322 KDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 5e-09
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 6/173 (3%)

Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV 220
             A  KC  ++SGH   + S  +DH      + S D TI+IWD+  G L  TL GH   V
Sbjct: 187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246

Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
                  + +  F             + N   R +  H + +  +      D +L  G +
Sbjct: 247 G----LLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE 302

Query: 281 SVCRVWDIRTKMQIFA-LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRY 332
           +   ++++R+   + A +    + + SV  +     V     D       L +
Sbjct: 303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLEILDF 354

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.5 bits (191), Expect = 8e-17
 Identities = 43/299 (14%), Positives = 96/299 (32%), Gaps = 19/299 (6%)

Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAV 225
           +  + ISGH   + ++  +       +GS D  I  W  +          H   +  L  
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDN 54

Query: 226 SSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL--SGVYCLGLHPTIDILLTGGRDSVC 283
           S    Y   + DD        +     +         G   +  +    ++L      + 
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHK 343
           +   + +     +L+ +   V            ++    S      LR   + ++++  +
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 344 KSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGG 403
             + A  +      +   S E        +   ++ +  +      +    EE ++ATG 
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 404 DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
            + +++ +  K      +A           + G+  L ++ T S LV+  AD  IK W 
Sbjct: 235 LDTNIFIYSVKRPMKIIKALN-------AHKDGVNNLLWE-TPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.2 bits (141), Expect = 2e-10
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 155 KWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL-TL 213
           +     W         IS       +   +       TGS D  I I+ V +    +  L
Sbjct: 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 254

Query: 214 TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD 245
             H + V  L   +  T + S+G D  +K W+
Sbjct: 255 NAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (129), Expect = 8e-09
 Identities = 18/154 (11%), Positives = 50/154 (32%), Gaps = 13/154 (8%)

Query: 147 AIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAK 206
           A+     +     +       + + +        ++   S T+   G     I ++D+  
Sbjct: 134 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 193

Query: 207 GTLKLTLTGHIEQV-----------RGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRS 254
             +K +                          +   + +   D  +  + +++  K+I++
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 253

Query: 255 YHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
            + H  GV  L        L++ G D+  + W++
Sbjct: 254 LNAHKDGVNNLLWETP-STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 9e-08
 Identities = 21/250 (8%), Positives = 57/250 (22%), Gaps = 2/250 (0%)

Query: 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA 224
           W    +   H   + S+    +  +      D                           A
Sbjct: 36  WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 95

Query: 225 VSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR 284
           V +    +             +  N    +     + V           +       V  
Sbjct: 96  VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF 155

Query: 285 VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLRYGKTMLTLTHHK 343
                 + +   ++   +             ++                   +  ++   
Sbjct: 156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215

Query: 344 KSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATG 402
               A      ED  A+ S +  I  +++ +   +   L+  K  +N++       L + 
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSS 275

Query: 403 GDNGSLWFWD 412
           G +  +  W+
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 3e-06
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSV 307
            ++V+++  GH  G+  L ++P    L++G  D     W   +  Q      H N + S+
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52

Query: 308 FTRPTDPQVVTGSHDSTIKFW 328
                         D+     
Sbjct: 53  DNSKAQEYSSISWDDTLKVNG 73

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (193), Expect = 2e-16
 Identities = 34/319 (10%), Positives = 89/319 (27%), Gaps = 38/319 (11%)

Query: 170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG----TLKLTLTGHIEQVRGLAV 225
               H   + SV+    N++  + S D  +K+WD            + +  + +     V
Sbjct: 9   AGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 226 SS---------KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLT 276
                      +   + +      +  + + +    +        +    +         
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK------H 120

Query: 277 GGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTM 336
                     + R             T       P   +  + + + +     L    T+
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS---PTLELQGTV 177

Query: 337 LTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVN-- 394
            +     +   ++ +          +   ++   L     L+N  SQ   I NS ++   
Sbjct: 178 ESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 395 ----EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDS--------EAGIYALSY 442
               +  +LA   D+ S            ++  ++  P              + + +LS+
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 443 DVTGSRLVTCEADKTIKMW 461
           + +G  L +   D  ++ W
Sbjct: 298 NDSGETLCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 4e-12
 Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 34/227 (14%)

Query: 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD------VAKGTLKLTLTGHIE 218
                       +  SV          TG  + T++I +      +     + ++  +  
Sbjct: 174 QGTVESPMTPSQFATSVDI-SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232

Query: 219 QVRGLAVSSKHTYMFSAGDDKQV---KCWD-------------LEQNKVIRSYHGHLSGV 262
            +R +  S + + +  A D         ++                ++       H S V
Sbjct: 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 292

Query: 263 YCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD 322
             L  + + + L + G D   R WD++TK +I  L  H + +          +   G   
Sbjct: 293 MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE--HGDSL 350

Query: 323 STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKF 369
           +    +D+++          KK  R+       +       +   ++
Sbjct: 351 AEPGVFDVKF---------LKKGWRSGMGADLNESLCCVCLDRSIRW 388

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 30/351 (8%), Positives = 89/351 (25%), Gaps = 83/351 (23%)

Query: 174 HLGWVRSVAFDHSN-TWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSK---- 228
           H+  ++++  D        T S    +  + + +      +      +    +       
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 229 -----------HTYMFSAGDDKQVKCWDLEQ------------------NKVIRSYHGHL 259
                         + +         W                         + S     
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 260 SGVYCLGLHPTIDILLTGGRDSVCRVWD------IRTKMQIFALAGHDNTVCSVFTRPTD 313
                + +     ++ TG  +   ++ +      +       ++  + N++ SV   P  
Sbjct: 185 QFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243

Query: 314 PQVVTGSHDSTI---KFWDLRY-------------GKTMLTLTHHKKSVRAMALHPTEDC 357
             +      ++      ++  +              +  L    H   V +++ + + + 
Sbjct: 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303

Query: 358 FASASAEN-IKKFNLPKGEFLHNMLSQQKTI---INSMAVNEEGVLATGGDNGSLWFWDW 413
             SA  +  ++ +++   E +  +      I    + +AV+E G          + F   
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 363

Query: 414 KSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED 464
                                 G  +         L     D++I+ +RE 
Sbjct: 364 ----------------------GWRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 7/142 (4%)

Query: 134 STSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTG 193
               S+     T    E               +       H  WV S++F+ S    C+ 
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 194 SADRTIKIWDVAKGTLKLTLTGHIEQVR----GLAVSSKHTYMFSAGDDKQVKCWDLEQN 249
             D  ++ WDV       TL  H + +      LAV      +   G         L++ 
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF---DVKFLKKG 364

Query: 250 KVIRSYHGHLSGVYCLGLHPTI 271
                       + C+ L  +I
Sbjct: 365 WRSGMGADLNESLCCVCLDRSI 386

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.4 bits (178), Expect = 6e-15
 Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 21/302 (6%)

Query: 176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSA 235
           G    +    +       +   ++    V   T     T H  Q      S    Y  S 
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 236 GDDKQVKCWDLEQN-----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRT 290
                V+ WD  Q        I  + G +  +        I  +  G             
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136

Query: 291 KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMA 350
                            F      ++++GS D+T+  ++    K   T   H K V ++ 
Sbjct: 137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 196

Query: 351 LHPTEDCFASAS-AENIKKFNLPKGEFLHNMLSQQKTIINSMAVN-------EEGVLATG 402
            +P    FAS      I  +N   G             +             +   +A+ 
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256

Query: 403 GDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR 462
             + ++  W+  +    +  +TI  P     E     + +      LV+  A+  I    
Sbjct: 257 SADKTIKIWNVATL---KVEKTI--PVGTRIEDQQLGIIWT--KQALVSISANGFINFVN 309

Query: 463 ED 464
            +
Sbjct: 310 PE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.8 bits (153), Expect = 8e-12
 Identities = 37/261 (14%), Positives = 75/261 (28%), Gaps = 14/261 (5%)

Query: 166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL-----TGHIEQV 220
               + + H           S  +  +G     ++IWD  + T  L       +G ++ +
Sbjct: 49  TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

Query: 221 RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD 280
              + S +   +    +                      +             +++G  D
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168

Query: 281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLT-- 338
           +   +++            H   V SV   P      +   D TI  ++   G       
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 228

Query: 339 -----LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMA 392
                   H  SV  +   P     ASASA+  IK +N+   +    +    +     + 
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 288

Query: 393 VNEEG-VLATGGDNGSLWFWD 412
           +      L +   NG + F +
Sbjct: 289 IIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 161 WHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE-Q 219
                        H G V  + +    T   + SAD+TIKIW+VA   ++ T+      +
Sbjct: 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283

Query: 220 VRGLAVSSKHTYMFSAGDDKQVKCWDLE 247
            + L +      + S   +  +   + E
Sbjct: 284 DQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 8/148 (5%)

Query: 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
           +              P+K       H  +V SV ++   + F +   D TI +++   GT
Sbjct: 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222

Query: 209 LKLT-------LTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLS- 260
                         H   V GL  S   T + SA  DK +K W++   KV ++       
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 261 GVYCLGLHPTIDILLTGGRDSVCRVWDI 288
               LG+  T   L++   +      + 
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNP 310

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 73.2 bits (178), Expect = 8e-15
 Identities = 29/326 (8%), Positives = 80/326 (24%), Gaps = 54/326 (16%)

Query: 181 VAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAG-DD 238
            A    + +    +    + + DVA  T+  +             ++  +   +      
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 239 KQVKCWDLEQNKVIR------SYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292
             +   DL+  K                 +Y   + P    +      +         K 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 293 QIFALAGHDNT----VCSVFTRPTDPQVVTGSHDSTI-------KFWDLRYGKTMLTLTH 341
               +    +         F  P    ++  + D ++          D++ GK  + L  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 342 HKKSVRAMALHPTEDCFASASAEN--------------------------IKKFNLPKGE 375
              + +  +       +   S  +                              +L  G+
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 376 FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEA 435
                 +    +  +   + +      G    L  +D K     +         + + + 
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK---------AANLDH 292

Query: 436 GIYALSYDVTGSRLVTCEADKTIKMW 461
             Y +++D  G +L        + ++
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 27/234 (11%), Positives = 57/234 (24%), Gaps = 33/234 (14%)

Query: 137 ASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGW--VRSVAFDHSNTWFCTGS 194
            ++            +          A     + +        V  +      + +  G 
Sbjct: 104 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 163

Query: 195 ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF--------------------- 233
               I   DV  G   + L       R    +    Y +                     
Sbjct: 164 ---DIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 219

Query: 234 -----SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
                +A         DL+  K        L+ +Y  GL    D     G  +    +D+
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279

Query: 289 RTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHH 342
           + +  I A    D+T   V       ++  G   + +  ++    + +  +   
Sbjct: 280 KQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 24/251 (9%), Positives = 51/251 (20%), Gaps = 27/251 (10%)

Query: 222 GLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-HGHLSGVYCLGLHPTIDILL-TGGR 279
           G A+ + H YM        +   D+  + V +S       G     + P           
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 280 DSVCRVWDIRTKMQIFAL------AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG 333
                  D+ T    F             ++ S    P   +V    + +          
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 334 KTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAV 393
              L +      + A  +                              +   ++  +   
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLM----------------RAADDGSLYVAGPD 164

Query: 394 NEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIV---QPGSLDSEAGIYALSYDVTGSRLV 450
             +  + TG    +L   +W                Q    +         +        
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224

Query: 451 TCEADKTIKMW 461
           T +        
Sbjct: 225 TADLLYGYLSV 235

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 33/274 (12%), Positives = 77/274 (28%), Gaps = 9/274 (3%)

Query: 190 FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQ 248
           +   S    I + DV    +  T+        G  +S   T ++ +      V   D   
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVF 308
           N VI +     S            + +T    S   V D  +   +        +   + 
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKTGKSPLGLA 122

Query: 309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKK 368
             P   ++   ++            K ++      +S + +A+ P       A+ +++  
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182

Query: 369 FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQP 428
             +           + +   + +AVN EG               + +  +     T    
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGT-----KAYVTNVDKYFNTVSMIDTGTNKIT 237

Query: 429 GSLDSEAGIYALSYDVTGSRL-VTCEADKTIKMW 461
             +        ++    G ++ V      T+ + 
Sbjct: 238 ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVI 271

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.4 bits (147), Expect = 6e-11
 Identities = 29/314 (9%), Positives = 70/314 (22%), Gaps = 51/314 (16%)

Query: 189 WFCTGSADRTIKIWDVAKGTL--KLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWD 245
           +    +    + + D  K  +   +T+           V+      ++     + +   D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 246 LEQNKVIRSYHGH-----------------LSGVYCLGLHPTIDILLTGGRDSVCRVWDI 288
           L   + +                          +        +++     + +   ++D 
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 289 RT--------------------KMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFW 328
            T                            G D  V               S ++     
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182

Query: 329 DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTI 387
                      +    +          D     +    +   +L  GE     +      
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 388 INSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS 447
             S AVN     A G  N  L  +D +   + +          +      Y+++    GS
Sbjct: 243 YFSTAVNPAKTRAFGAYN-VLESFDLEKNASIK---------RVPLPHSYYSVNVSTDGS 292

Query: 448 RLVTCEADKTIKMW 461
            +    A   +  +
Sbjct: 293 TVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 10/119 (8%), Positives = 32/119 (26%), Gaps = 11/119 (9%)

Query: 158 RPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSA----------DRTIKIWDVAKG 207
             +  A       +    G +        + ++ + +              ++ +D+ K 
Sbjct: 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN 270

Query: 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG 266
                +         + VS+  + ++  G    +  +D E  +         +    L 
Sbjct: 271 ASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 18/204 (8%), Positives = 40/204 (19%), Gaps = 4/204 (1%)

Query: 148 IMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKG 207
                  +       A         G    V               S +           
Sbjct: 128 RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187

Query: 208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI-RSYHGHLSGVYCLG 266
                 +  +                       +   DLE  ++  R         +   
Sbjct: 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA 247

Query: 267 LHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK 326
           ++P        G  +V   +D+             ++  SV        V  G     + 
Sbjct: 248 VNPAKTRA--FGAYNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLA 304

Query: 327 FWDLRYGKTMLTLTHHKKSVRAMA 350
            +D    +    +     +  ++A
Sbjct: 305 AYDAETLEKKGQVDLPGNASMSLA 328

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 32/266 (12%), Positives = 70/266 (26%), Gaps = 9/266 (3%)

Query: 155 KWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT 214
           +W  PE    WK   V        +    D  N +  T      I + D     +   + 
Sbjct: 1   EWGMPEMRESWKVL-VKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID 59

Query: 215 GHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV-----IRSYHGHLSGVYCLGLHP 269
                V    +S+   Y+   G D ++   DL   +      I+      S         
Sbjct: 60  TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118

Query: 270 TIDILLTGGRDSVCRVW-DIRTKMQIFALAGHDNTVCSV-FTRPTDPQVVTGSHDSTIKF 327
                + G          D  T      ++    TV +  +        +  SH+     
Sbjct: 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178

Query: 328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTI 387
            +++    +L + +       +         A    ++  ++ +      + +       
Sbjct: 179 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD 238

Query: 388 INSMAVNEEGVLATGGDNGSLWFWDW 413
               A+ + G     G   +     +
Sbjct: 239 RRLSALVDVGKTPHPGRGANFVHPKY 264

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 31/263 (11%), Positives = 66/263 (25%), Gaps = 21/263 (7%)

Query: 165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-----GHIEQ 219
            K  +VI      V       S  +      D  I + D+                    
Sbjct: 52  KKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110

Query: 220 VRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTG 277
                   +  Y  +      Q    D E  +  +        V     HP      +  
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170

Query: 278 GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML 337
             +    + +++   ++  +   D    +V +    P +  G  DS+ +++      +  
Sbjct: 171 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNK 230

Query: 338 TLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG 397
                 K  R  AL             N              +  +   + ++  + +  
Sbjct: 231 VAVIDSKDRRLSALVDVGKTPHPGRGANF-------------VHPKYGPVWSTSHLGDGS 277

Query: 398 VLATGGDNGSLWFWDWKSGHNFQ 420
           +   G D  +   + WK     Q
Sbjct: 278 ISLIGTDPKNHPQYAWKKVAELQ 300

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 6e-10
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 3/101 (2%)

Query: 149 MERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT 208
                      +     K        +           +  F T  AD TI++WDV    
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284

Query: 209 LKLTLTGHIEQVRGLAVS---SKHTYMFSAGDDKQVKCWDL 246
                T   +Q+    V    + +  + S   D  +  ++L
Sbjct: 285 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 7e-09
 Identities = 28/277 (10%), Positives = 72/277 (25%), Gaps = 25/277 (9%)

Query: 161 WHAPWKCYRVISGHLG-WVRSVAF--DHSNTWFCTGSADRTIKIWDVAKGTLKLTL---- 213
             +        +GH    V +V F     + + C+G     + +W         ++    
Sbjct: 48  GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 107

Query: 214 ----TGHIEQVRGLAVSSK--HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGL 267
                     +  ++   +     +   G D        +    +    GH   +    L
Sbjct: 108 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL 167

Query: 268 HPTIDILLTGGRDSVCR----VWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS 323
             +  +      D            +            + V  V   P   + V      
Sbjct: 168 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 227

Query: 324 TIKFW----DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLH 378
                       + K +       +             FA+  A+  I+ +++   + + 
Sbjct: 228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ 287

Query: 379 NMLSQQKTIIN---SMAVNEEGVLATGGDNGSLWFWD 412
                ++ + N    +     G + +   +G+L F++
Sbjct: 288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 9e-09
 Identities = 34/315 (10%), Positives = 85/315 (26%), Gaps = 30/315 (9%)

Query: 172 SGHLGWVRSVAFDHSNTWFCTGSADRT-IKIWDVAKGTLKL--TLTGHI-EQVRGLAVSS 227
           S    +   +++D +             ++  D     +      TGH    V  +  S 
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 228 KH--TYMFSAGDDKQVKCWDLEQNKVIRS--------YHGHLSGVYCLGLHPT--IDILL 275
                Y+ S  +  +V  W    +K   S        +      +  +          ++
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 276 TGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT 335
             GRD+        +   +  ++GH   + +   + + P       D     +       
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 336 MLTLTH----HKKSVRAMALHPT-----EDCFASASAENIKKFNLPKGEFLHNMLSQQKT 386
                         VR +   P          +          +    +++ +     + 
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253

Query: 387 IINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG 446
            I +++  +    AT G + ++  WD  +    Q+                  +      
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK----WTLDKQQLGNQQVGVVAT-GN 308

Query: 447 SRLVTCEADKTIKMW 461
            R+++   D T+  +
Sbjct: 309 GRIISLSLDGTLNFY 323

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 31/318 (9%), Positives = 69/318 (21%), Gaps = 60/318 (18%)

Query: 192 TGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQV 241
             +A     + D   G +   + G    +    V+   +++  A               V
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80

Query: 242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR---------DSVCRVWDIRTKM 292
           + +D              +  + +G +P +  L   G+              V D+  K 
Sbjct: 81  EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140

Query: 293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYG------KTMLTLTHHKKSV 346
               L   D          T         D ++               T +     +  +
Sbjct: 141 FKRMLDVPDCYHIFPTAPDTF---FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI 197

Query: 347 RAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVN------------ 394
              A           +                 + + +       A              
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257

Query: 395 -----------EEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD 443
                      +         +  +   D K+G    + +   +  S+        +S D
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSI-------NVSQD 310

Query: 444 VTGSRLVTCEADKTIKMW 461
                      DKT+ + 
Sbjct: 311 EKPLLYALSTGDKTLYIH 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 21/231 (9%), Positives = 50/231 (21%), Gaps = 32/231 (13%)

Query: 153 PSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT---- 208
           P+              R++     +     F  +   F     D ++             
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHI---FPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183

Query: 209 --LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV--IRSYHGHLSGVYC 264
              ++        +   A S K   +       ++   DL       + +          
Sbjct: 184 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243

Query: 265 LGLHPTIDILLTGGRDSVC--------------------RVWDIRTKMQIFALAGHDNTV 304
            G  P     +   R                         V D +T  ++          
Sbjct: 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID 303

Query: 305 CSVFTRPTDPQ-VVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354
               ++   P      + D T+   D   G+ + ++       + +     
Sbjct: 304 SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 30/203 (14%), Positives = 51/203 (25%), Gaps = 20/203 (9%)

Query: 184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC 243
           D  N +  T      I + D +   +K  L      V    +S+   Y+F  G D +V  
Sbjct: 29  DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNM 87

Query: 244 WDLEQNKV-----IRSYHGHLSGVYCLGLHPTIDILL-TGGRDSVCRVWDIRTKMQIFAL 297
            DL   +      I+      S              +          + D  T       
Sbjct: 88  IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147

Query: 298 AGHDNTVCSVFTRPTDPQ------------VVTGSHDSTIKFWDLRYGKTM-LTLTHHKK 344
           +    T       P                +V       I   D      +  T    ++
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 207

Query: 345 SVRAMALHPTEDCFASASAENIK 367
            +    L  +   F +A+    K
Sbjct: 208 FLHDGGLDGSHRYFITAANARNK 230

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 31/270 (11%), Positives = 67/270 (24%), Gaps = 41/270 (15%)

Query: 223 LAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV 282
                ++ +  +  D  Q+   D    ++          V+   L  +   L   GRD  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84

Query: 283 CRVWDIRTK-----MQIFALAGHDNTVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTM 336
             + D+  K      +I   +   +   S      D                D    +  
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 337 LTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEE 396
              +    +      HP     A  ++    +F                           
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF--------------------------- 177

Query: 397 GVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLD---SEAGIYALSYDVTGSRLVTCE 453
             +    + G +   D+   +N +  +   +    D     +  Y ++     ++LV  +
Sbjct: 178 --IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVID 235

Query: 454 ADKTIKMWREDETATPETHP--LNFKPPKD 481
             +   +  ED            NF  P  
Sbjct: 236 TKEGKLVAIEDTGGQTPHPGRGANFVHPTF 265

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 17/187 (9%), Positives = 43/187 (22%), Gaps = 7/187 (3%)

Query: 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-----GHIEQVRGLAVSSKHTY 231
            V       S  +      D  + + D+                            +  Y
Sbjct: 63  AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122

Query: 232 MFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL-LTGGRDSVCRVWDIR 289
             +      Q    D E  +  +              HP   +  +         + +++
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182

Query: 290 TKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAM 349
              +I  +   D           +  +  G  D + +++          +    K  + +
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242

Query: 350 ALHPTED 356
           A+  T  
Sbjct: 243 AIEDTGG 249

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 26/300 (8%), Positives = 73/300 (24%), Gaps = 25/300 (8%)

Query: 190 FCTGSADRTIKIWDV-AKGTLKLT-LTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDL 246
           +      + I +W++  +G L LT +     QV+ + VS    Y++     + +V  + +
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 247 EQNKVIRSYHGHL---SGVYCLGLHP---TIDILLTGGRDSVCRVWDIRTKMQIFALAGH 300
             +    ++         +  +        + +      +      +    + +  +   
Sbjct: 67  APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126

Query: 301 DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFAS 360
            +   S    P +  +   +                L      +        P    F  
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 186

Query: 361 ASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ 420
                     L     +  +      I     ++      +     +         H + 
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 246

Query: 421 Q---------------AQTIVQPGSLDSEAGIYALSYDVTGSRL-VTCEADKTIKMWRED 464
                              + + G   +E      + D +G  L    +    I ++   
Sbjct: 247 CDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 1/53 (1%)

Query: 171 ISGHLGWVRSVAFDHSNTW-FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRG 222
                   R    DHS  +    G     I ++++      L   G     +G
Sbjct: 271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQG 323

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 30/255 (11%), Positives = 71/255 (27%), Gaps = 17/255 (6%)

Query: 173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYM 232
           G       VA +  N      + +  I+I+D  +G       G   +     +      +
Sbjct: 20  GQFTEPSGVAVNAQNDIIVADTNNHRIQIFD-KEGRF-KFQFGECGKRDSQLLYPNRVAV 77

Query: 233 FSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKM 292
                D  V          I + +G     +   +      +    +  +  V     ++
Sbjct: 78  VRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRV 137

Query: 293 QIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGK-----------TMLTLTH 341
            IF   G+             P  V  +    I   D R                +    
Sbjct: 138 IIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEG 197

Query: 342 HKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQK-TIINSMAVNEEGV 398
                  + ++   +   + +  N  +  F    G+ +  + S+ K      +A+ ++G 
Sbjct: 198 ITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGS 256

Query: 399 LATGGDNGSLWFWDW 413
           +     +  L+ + +
Sbjct: 257 VVLASKDYRLYIYRY 271

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 37/280 (13%), Positives = 73/280 (26%), Gaps = 20/280 (7%)

Query: 177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG 236
           ++ ++A     T F T        I  +     +        +V GLA +S    + +  
Sbjct: 29  FLENLASAPDGTIFVTNHEVGE--IVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW 86

Query: 237 DDKQVKCWDLEQNKVIRSYHGHLS-GVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIF 295
           +   +    L ++         L   ++  G+ P  D            +W I       
Sbjct: 87  NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146

Query: 296 ALAGHDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLRYGKTMLTLTHHKKSVRAMALHPT 354
           ++      +    +    P         + +   +      +              +   
Sbjct: 147 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE 206

Query: 355 E---DCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA-----TGGDNG 406
           +   D FA     N+          +     +  TII        G  A     T GD  
Sbjct: 207 QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCT 266

Query: 407 SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTG 446
           +++     +G  F    T V P        +  L     G
Sbjct: 267 AIYVVT--NGGMFLPPPTGVVPA------NVVRLEVGKPG 298

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	485
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.57
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.42
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.06
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.03
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.78
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.69
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.5
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.25
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.19
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.04
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.01
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.99
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.96
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.95
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.88
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.88
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.83
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.82
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.73
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.67
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.61
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.6
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.54
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.36
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.29
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.08
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.33
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.29
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.04
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.73
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.8
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.22
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	92.95
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.24
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.6
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	85.47
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.67
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.77

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.9e-44  Score=336.63  Aligned_cols=287  Identities=24%  Similarity=0.450  Sum_probs=269.3

Q ss_pred             eEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          167 CYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       167 ~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      ...+|+||.+.|++|+|+|++++|+||+.||+|+|||+.+++.+.++.+|...|.+++|++++.++++++.++.+.+|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEE
Q 011457          247 EQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIK  326 (485)
Q Consensus       247 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~  326 (485)
                      ...+....+.+|...+.++.|+++++.+++++.|+.+++||+++++.+..+.+|...+.++++++++.+|++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeEEeEeccCCCceEEEEECCCC--------------------CEEEEEcCCC-EEEEECCCCceeeeeccCCc
Q 011457          327 FWDLRYGKTMLTLTHHKKSVRAMALHPTE--------------------DCFASASAEN-IKKFNLPKGEFLHNMLSQQK  385 (485)
Q Consensus       327 iwd~~~~~~~~~~~~~~~~v~~l~~~p~~--------------------~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~  385 (485)
                      +|++.+++....+..+...+.++.++|++                    .++++++.++ +++|++.+++.+..+ ..|.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~~~  247 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHD  247 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-ECCS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE-eCCC
Confidence            99999999999999999999999998753                    4678888777 999999999988876 5677


Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          386 TIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       386 ~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      ..|.++++++++ +|++|+.||.|++||+.+++.+..+.        .|...|++++|+|++++|++|+.||+|+|||
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--------CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            899999999999 99999999999999999998777664        4778899999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-43  Score=337.49  Aligned_cols=285  Identities=17%  Similarity=0.324  Sum_probs=255.6

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce-----EEEEcccccCEEEEEEcCCCCEEEEEeCCC
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL-----KLTLTGHIEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~-----~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      .+.++.+ +|...|+|++|+|+|++|++|+ ||.|+|||+.+...     .....+|.+.|.+++|+|++++|++|+.||
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            4556666 8999999999999999999997 89999999976532     233457899999999999999999999999


Q ss_pred             cEEEEECCCC--eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE
Q 011457          240 QVKCWDLEQN--KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV  317 (485)
Q Consensus       240 ~V~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  317 (485)
                      .|++||+...  +....+..|...+.+++|+|++.++++++.|+.|++||+++++......+|...|.+++|++++..++
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999998744  56677788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCC
Q 011457          318 TGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEE  396 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~  396 (485)
                      +++.||.|++||+++++.+..+. +...|.+++|+|++.++++++.++ +++||+.+++....  ..|...|.++.|+|+
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~i~~v~~s~~  276 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLHESCVLSLKFAYC  276 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCCSSCEEEEEECTT
T ss_pred             cccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccc--cccccccceEEECCC
Confidence            99999999999999999887764 678899999999999999988877 99999998887643  467788999999999


Q ss_pred             C-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          397 G-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       397 ~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      + +|++|+.||.|++||+.+++.+...         .|...|++++|+|++++|++|+.||+|+|||+
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYGASIFQS---------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEE---------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEc---------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9 9999999999999999998876543         36678999999999999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-41  Score=332.35  Aligned_cols=286  Identities=23%  Similarity=0.431  Sum_probs=246.1

Q ss_pred             EEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc------------------ccccCEEEEEEcCCCCE
Q 011457          170 VISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT------------------GHIEQVRGLAVSSKHTY  231 (485)
Q Consensus       170 ~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~------------------~h~~~V~~l~~s~~~~~  231 (485)
                      ...+|.+.|+||+|+|+|++||+|+ |+.|+|||+.+++.+..+.                  .|...|++++|+|++++
T Consensus        57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            3347999999999999999999986 8999999999998877664                  35667999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcC
Q 011457          232 MFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRP  311 (485)
Q Consensus       232 l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  311 (485)
                      |++|+.||.|++||...++.+..+.+|...|.++.+++++..+++++.++.+++||+++.........+...+....+.+
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  215 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  215 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             ceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999888887776666555555556


Q ss_pred             CCCEEEEEeCCCCEEEEECCCCeEEeEe-------ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee----
Q 011457          312 TDPQVVTGSHDSTIKFWDLRYGKTMLTL-------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN----  379 (485)
Q Consensus       312 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~----  379 (485)
                      ++.+|++++.||.|++||..++.....+       ..|...|.+++|+|++.+|++++.++ +++||+.++.....    
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence            8899999999999999999998877655       34678899999999999999999887 99999976644321    


Q ss_pred             -------eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE------ccC
Q 011457          380 -------MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY------DVT  445 (485)
Q Consensus       380 -------~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~------s~~  445 (485)
                             ....+...|.+++|++++ +|++|+.||.|++||+.+++.+..+.        +|...|+++++      +|+
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~--------~H~~~V~~~~~~~~~~~spd  367 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--------GHRNSVISVAVANGSSLGPE  367 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECSSCTTCTT
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe--------CCCCCEEEEEEecCcccCCC
Confidence                   234567789999999999 99999999999999999998877665        47788999875      678


Q ss_pred             CCEEEEEECCCcEEEecCC
Q 011457          446 GSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       446 g~~L~s~~~Dg~I~iW~~~  464 (485)
                      +++|+||+.||+|+||+++
T Consensus       368 ~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         368 YNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEeee
Confidence            9999999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-41  Score=323.17  Aligned_cols=284  Identities=17%  Similarity=0.157  Sum_probs=248.6

Q ss_pred             cCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI  252 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~  252 (485)
                      .+++.+..++++|+|+.|+.++ ++.|.+||+.+.+....+.+|...|++++|+|++++|++|+.||+|++||+.+++..
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            4566777899999999999985 567999999999999999999999999999999999999999999999999887643


Q ss_pred             --EEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCE-EEEEeCCCCEEE
Q 011457          253 --RSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ-VVTGSHDSTIKF  327 (485)
Q Consensus       253 --~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~s~dg~I~i  327 (485)
                        ..+..|...|.+++|+|++++|++++.  +..+++|++++++....+.+|...|.+++|+|++++ |++|+.||.|++
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence              557889999999999999999999986  456999999999999999999999999999999885 788999999999


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeec------cCCcccEEEEEeCCCC-eE
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML------SQQKTIINSMAVNEEG-VL  399 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~------~~~~~~i~~~~~~~~~-~l  399 (485)
                      ||+++++....+..|...|.++.|+|++.++++++.++ +++||..++.....+.      ..|...|.+++|+|++ +|
T Consensus       174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l  253 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  253 (311)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEE
Confidence            99999999999999999999999999999999998776 9999999988776652      2466789999999998 99


Q ss_pred             EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                      ++|+.||.|+|||+++++.+..+...     ......+.++.|+  +++|++++.||.|++||.+
T Consensus       254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~-----~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         254 ASASADKTIKIWNVATLKVEKTIPVG-----TRIEDQQLGIIWT--KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECC-----SSGGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEECC-----CCccceEEEEEec--CCEEEEEECCCEEEEEeCC
Confidence            99999999999999999877665431     1123345556555  6689999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-40  Score=314.40  Aligned_cols=290  Identities=23%  Similarity=0.381  Sum_probs=261.9

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      ..+..++|+||.+.|++|+|+|++++||||+.||+|+|||+.+++.+..+..|...|.+++|+|++.++++|+.|+.+++
T Consensus        44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCC----eeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE
Q 011457          244 WDLEQN----KVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG  319 (485)
Q Consensus       244 wd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  319 (485)
                      |+....    .....+.+|........... +..+.....|.....++............+...+....+.+.+.+++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            998654    35566777877776666554 4678888999999999999888888888888999999999999999999


Q ss_pred             eCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee-ccCCcccEEEEEeCCCC
Q 011457          320 SHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEG  397 (485)
Q Consensus       320 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~  397 (485)
                      +.|+.|++||+++++.+..+..|...|.+++|+|++.+|++++.++ +++|++........+ ...+...+.++.|++++
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred             ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCC
Confidence            9999999999999999999999999999999999999999999887 999999988877655 34455779999999999


Q ss_pred             -eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          398 -VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       398 -~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                       +|++|+.||.|++||+.+++.+..+.        +|...|++++|+|++++|++|+.||+|+|||
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVLA--------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEEc--------CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence             99999999999999999988776654        4788999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-39  Score=310.47  Aligned_cols=283  Identities=19%  Similarity=0.311  Sum_probs=253.5

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCc-ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPW-KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~-~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      -+|...|.++++++++.++++++ |+.+++|+........ .......+|.+.|++++|+|++++|++|+.||.|++||+
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~  126 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccc
Confidence            36889999999999999999987 7889999765433222 233345689999999999999999999999999999998


Q ss_pred             CCC--ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          205 AKG--TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       205 ~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                      ...  +....+..|...|.+++|+|++.++++++.|+.|++|++.++++.....+|...|.+++|+++++.+++++.|+.
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            754  556778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS  362 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~  362 (485)
                      |++||+++++.+..+. |...|.+++|+|++++|++++.||.|++||++.++.. ....|...|.+++|+|++.+|++++
T Consensus       207 v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s  284 (337)
T d1gxra_         207 VRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe
Confidence            9999999998887775 8899999999999999999999999999999988765 4567888999999999999999999


Q ss_pred             CCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          363 AEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       363 ~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      .++ |++||+.+++.+..+  .+...|.+++|+|++ +|++|+.||+|+|||+
T Consensus       285 ~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         285 KDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEc--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            888 999999999988764  466789999999998 9999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.4e-39  Score=314.29  Aligned_cols=291  Identities=13%  Similarity=0.138  Sum_probs=240.0

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCc--eEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGT--LKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV  251 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~  251 (485)
                      +.++|+|++|+|++++||+|+.||.|+|||+.+++  .+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            45889999999999999999999999999998775  5677899999999999999999999999999999999987764


Q ss_pred             E--EEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceE----EEeccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457          252 I--RSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQI----FALAGHDNTVCSVFTRPTDPQVVTGSHDSTI  325 (485)
Q Consensus       252 ~--~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I  325 (485)
                      .  ..+.+|...|.+++|+|+++.|++|+.|+.|++|++......    .....|...|.++.|+|++.+|++|+.||+|
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            4  445678999999999999999999999999999998766543    3345788999999999999999999999999


Q ss_pred             EEEECCCC------------------eEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcc
Q 011457          326 KFWDLRYG------------------KTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT  386 (485)
Q Consensus       326 ~iwd~~~~------------------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~  386 (485)
                      ++||....                  ..+.....|...|.+++|+|++.+|++++.++ |++||+.++..+..+ ..+..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~  244 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-ASETL  244 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-ECSSC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee-ecccc
Confidence            99998643                  34556677888999999999999999999887 999999999988876 56777


Q ss_pred             cEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceee---------------------------------eccCCCCC
Q 011457          387 IINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTI---------------------------------VQPGSLDS  433 (485)
Q Consensus       387 ~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~---------------------------------~~~~~~~~  433 (485)
                      .|.+++|++++.+++++.|+.+++|++........+...                                 .......|
T Consensus       245 ~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H  324 (371)
T d1k8kc_         245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH  324 (371)
T ss_dssp             CEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS
T ss_pred             cceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccc
Confidence            899999999996666677888777765433211110000                                 00001137


Q ss_pred             CccEEEEEEccCC----CEEEEEECCCcEEEecCCC
Q 011457          434 EAGIYALSYDVTG----SRLVTCEADKTIKMWREDE  465 (485)
Q Consensus       434 ~~~V~~l~~s~~g----~~L~s~~~Dg~I~iW~~~~  465 (485)
                      ...|+++++.+.+    ..|+|+|.||.|+||++++
T Consensus       325 ~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            7789999997754    4689999999999999854

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-39  Score=307.24  Aligned_cols=276  Identities=16%  Similarity=0.186  Sum_probs=237.7

Q ss_pred             eecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce--E
Q 011457          133 VSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL--K  210 (485)
Q Consensus       133 ~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~--~  210 (485)
                      ..++++|+++.++.+. ...+.+|....    ....+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.  .
T Consensus        21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~----~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCN-GTSVYTVPVGS----LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             CCCEECTTSSEEEEEE-TTEEEEEETTC----SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             EEEEEcCCCCEEEEEe-CCEEEEEECCC----CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            3456677887776654 44466776532    456677889999999999999999999999999999999988764  3


Q ss_pred             EEEcccccCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEEECCCcEEEEE
Q 011457          211 LTLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTGGRDSVCRVWD  287 (485)
Q Consensus       211 ~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg~~dg~i~iwd  287 (485)
                      ..+.+|...|.+++|+|++++|++++.  +..+++|++++++.+..+.+|...|.+++|+|+++ .|++|+.||.|++||
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d  175 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE  175 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred             cccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc
Confidence            567889999999999999999999986  46699999999999999999999999999999988 488899999999999


Q ss_pred             CCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec-------cCCCceEEEEECCCCCEEEE
Q 011457          288 IRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT-------HHKKSVRAMALHPTEDCFAS  360 (485)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~~~~l~~  360 (485)
                      +++++....+..|...|.++.++|+++++++++.||.|++||+.++.....+.       +|...|.+++|+|++.+|++
T Consensus       176 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t  255 (311)
T d1nr0a1         176 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  255 (311)
T ss_dssp             TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999988776653       46788999999999999999


Q ss_pred             EcCCC-EEEEECCCCceeeeeccCCc--ccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          361 ASAEN-IKKFNLPKGEFLHNMLSQQK--TIINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       361 ~~~~~-i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      ++.|+ |++||+.+++.+..+..+..  ..+.++.++++ .|++++.||.|++||.+
T Consensus       256 gs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ-ALVSISANGFINFVNPE  311 (311)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS-CEEEEETTCCEEEEETT
T ss_pred             EeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC-EEEEEECCCEEEEEeCC
Confidence            99888 99999999998887754443  33455556544 78899999999999964

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6e-38  Score=296.52  Aligned_cols=287  Identities=14%  Similarity=0.202  Sum_probs=233.7

Q ss_pred             ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc-ccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT-GHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      ++.++++||.+.|++|+|+|++++|+||+.||+|++||+.+++....+. +|...|++++|+|++. +++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEe
Confidence            4678999999999999999999999999999999999999999888874 6899999999999987 5566789999999


Q ss_pred             ECCCCee---EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          245 DLEQNKV---IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       245 d~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      +......   ......+...+.+++|+++++++++++ ++.+.+|+...  .....  ....+.+++++|++++|++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEET
T ss_pred             ccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--cccccccccccccccccccccc
Confidence            9865432   122345778899999999998776655 56899999543  22222  3456788999999999999999


Q ss_pred             CCCEEEEECCCCeEEe-EeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee--ccCCcccEEEEEeCCCC
Q 011457          322 DSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM--LSQQKTIINSMAVNEEG  397 (485)
Q Consensus       322 dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~  397 (485)
                      ||.|++||+++++... ....|...|.+++|+|++.+|++++.++ +++||+.++......  ...|...|.+++|+|++
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  236 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN  236 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998877544 3456788999999999999999998877 999999887665433  34577899999999999


Q ss_pred             -eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCC
Q 011457          398 -VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRED  464 (485)
Q Consensus       398 -~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~  464 (485)
                       +|++|+.||.|++||++++........     ...+...|.++.| +++++|++++.||+|++||+.
T Consensus       237 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         237 VRLATGSLDNSVIVWNMNKPSDHPIIIK-----GAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SEEEEEETTSCEEEEETTCTTSCCEEET-----TSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             cceEEEcCCCEEEEEECCCCCcceEEEe-----cCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence             999999999999999988754432221     1134456777765 567899999999999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-38  Score=297.60  Aligned_cols=283  Identities=23%  Similarity=0.413  Sum_probs=266.4

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..||.+.|.++.++|++++++|++.|+.+++|+...    .++++++.+|.+.|.+++|+|++.++++++.++.+.+|+.
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----CCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            457999999999999999999999999999997643    5678889999999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCR  284 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~  284 (485)
                      ...+....+.+|...+.++.|+++++++++++.|+.+++||+++++.+..+.+|...+.+++|++++++|++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceEEEeccCCccEEEEEEcCCC--------------------CEEEEEeCCCCEEEEECCCCeEEeEeccCCC
Q 011457          285 VWDIRTKMQIFALAGHDNTVCSVFTRPTD--------------------PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK  344 (485)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--------------------~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  344 (485)
                      +|++.+++....+.+|...+.++.+++++                    .++++++.|+.|++||+++++++..+..|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99999999999999999999999998754                    4689999999999999999999999999999


Q ss_pred             ceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          345 SVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       345 ~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      .|.+++|+|++.+|++++.++ |++||+.+++.+..+ ..|...|++++|++++ +|++|+.||.|+|||
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999998887 999999999988775 5678899999999998 999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-37  Score=291.43  Aligned_cols=292  Identities=25%  Similarity=0.429  Sum_probs=240.5

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKC  243 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~i  243 (485)
                      ++++.++|+||.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+++  +|++|+.|+.+++
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~   81 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV   81 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccc
Confidence            46778899999999865 36667999999999999999999999999999999999999999874  8999999999999


Q ss_pred             EECCCCeeEEEecccCCceE--------------------------------------EEEEecCCCEEEEEECCCcEEE
Q 011457          244 WDLEQNKVIRSYHGHLSGVY--------------------------------------CLGLHPTIDILLTGGRDSVCRV  285 (485)
Q Consensus       244 wd~~~~~~~~~~~~h~~~v~--------------------------------------~l~~~~~~~~l~sg~~dg~i~i  285 (485)
                      |+............+...+.                                      ...+.+....+++++.|+.|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  161 (342)
T d2ovrb2          82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV  161 (342)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEE
T ss_pred             cccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEE
Confidence            99876654433322221111                                      1123334557888999999999


Q ss_pred             EECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC
Q 011457          286 WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN  365 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~  365 (485)
                      ||.+....+..+.+|...+..+.+  ++.++++++.||.|++||++.++.+..+..|...+.++.+++  .+|++++.++
T Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~  237 (342)
T d2ovrb2         162 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADS  237 (342)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTS
T ss_pred             eecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCC
Confidence            999999999999988887777655  678999999999999999999999999999999999888764  5888888887


Q ss_pred             -EEEEECCCCceeeeecc--CCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE
Q 011457          366 -IKKFNLPKGEFLHNMLS--QQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY  442 (485)
Q Consensus       366 -i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  442 (485)
                       |++||....+....+..  .+...+.++.++++ ++++|+.||.|++||+++++.+..+....   ...|...|++++|
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~---~~~~~~~v~~v~~  313 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEFIRNLVTLE---SGGSGGVVWRIRA  313 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEEECT---TGGGTCEEEEEEE
T ss_pred             EEEEEecccccccccccccceeeeceeecccCCC-eeEEEcCCCEEEEEECCCCCEEEEEeccc---CCCCCCCEEEEEE
Confidence             99999999887776643  34566777777654 89999999999999999998877664422   2246778999999


Q ss_pred             ccCCCEEEEEECCCc----EEEecCCCC
Q 011457          443 DVTGSRLVTCEADKT----IKMWREDET  466 (485)
Q Consensus       443 s~~g~~L~s~~~Dg~----I~iW~~~~~  466 (485)
                      +|++.+|++|+.||+    |++||++..
T Consensus       314 s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            999999999999996    999999753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-37  Score=301.72  Aligned_cols=284  Identities=19%  Similarity=0.228  Sum_probs=239.4

Q ss_pred             cceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 011457          130 SAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL  209 (485)
Q Consensus       130 ~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~  209 (485)
                      ++|.++++++++.++++++.++.+.+|....  ..+..+..|++|.++|++|+|+|++++|++|+.|++|+|||+.++..
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~--~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCC--CCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            5688899999999999999999999997643  34567888999999999999999999999999999999999987764


Q ss_pred             E--EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----EEEecccCCceEEEEEecCCCEEEEEECCCcE
Q 011457          210 K--LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV----IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVC  283 (485)
Q Consensus       210 ~--~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i  283 (485)
                      .  ..+.+|...|.+++|+|++++|++++.|++|++|+++....    ......|...|.+++|+|++++|++|+.|+.|
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            4  44567899999999999999999999999999999876543    33446789999999999999999999999999


Q ss_pred             EEEECCCC------------------ceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCc
Q 011457          284 RVWDIRTK------------------MQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKS  345 (485)
Q Consensus       284 ~iwd~~~~------------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  345 (485)
                      ++||+...                  ..+....+|...|.+++|+|++++|++++.|+.|++||+..++.+..+..|..+
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  245 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP  245 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc
Confidence            99998642                  345666789999999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEC--CCCceeee--------------------------------------eccCCc
Q 011457          346 VRAMALHPTEDCFASASAENIKKFNL--PKGEFLHN--------------------------------------MLSQQK  385 (485)
Q Consensus       346 v~~l~~~p~~~~l~~~~~~~i~i~d~--~~~~~~~~--------------------------------------~~~~~~  385 (485)
                      |.+++|+|++.+|+++.++.+.+|..  ..+.....                                      +...|.
T Consensus       246 v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~  325 (371)
T d1k8kc_         246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK  325 (371)
T ss_dssp             EEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSS
T ss_pred             ceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccccc
Confidence            99999999999999988777655543  22221100                                      011256


Q ss_pred             ccEEEEEeCCCC-----eEEEEeCCCcEEEEeCCC
Q 011457          386 TIINSMAVNEEG-----VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       386 ~~i~~~~~~~~~-----~l~sg~~dg~I~iwd~~~  415 (485)
                      ..|+++++.+.+     .|++++.||.|++||+++
T Consensus       326 ~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         326 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             CCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            678888886543     588999999999999865

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=291.14  Aligned_cols=318  Identities=20%  Similarity=0.370  Sum_probs=256.3

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .||.+.|+++ .++++++++|++.|+.+++|+..    ..++++++.+|.++|++|+|+|+ .+|++|+.|+.|++|++.
T Consensus         9 ~GH~~~vitc-~~~~~~~l~tgs~Dg~i~vWd~~----~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           9 RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSI----NKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             ECCSSSCEEE-EEEETTEEEEEETTTEEEEEETT----TTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             CCcCCCcEEE-EEECCCEEEEEeCCCeEEEEECC----CCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            4688877653 45678899999999999999764    36889999999999999999985 589999999999999999


Q ss_pred             CCceEEEEcccc--cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-----------------------cccCC
Q 011457          206 KGTLKLTLTGHI--EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY-----------------------HGHLS  260 (485)
Q Consensus       206 ~~~~~~~~~~h~--~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~-----------------------~~h~~  260 (485)
                      ..+.......+.  ..+....+.+++.++++++.|+.|++||+.+...+...                       ..|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            988777665443  34456677889999999999999999999876543221                       22333


Q ss_pred             ceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec
Q 011457          261 GVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT  340 (485)
Q Consensus       261 ~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~  340 (485)
                      .+.  .+.+++++++++..|+.|++||+++++.+....++...+.++.+++++.++++++.|+.|++||++++..+..+.
T Consensus       163 ~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         163 SVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             CEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccc--ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence            333  455677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccc
Q 011457          341 HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       341 ~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                      .|...|.++.+++  .+|++++.++ |++||+.++......  ++........+++++.+++++.||.|++||+++++.+
T Consensus       241 ~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         241 GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV  316 (355)
T ss_dssp             CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBC
T ss_pred             ccccccccccccc--ceeeeeecccccccccccccceeccc--ccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEE
Confidence            9999999999974  6888888887 999999988765443  3333334445667775666667999999999999876


Q ss_pred             ccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          420 QQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       420 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      ....       ..|...|++++|+++ .++++++.||.++||.+
T Consensus       317 ~~~~-------~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         317 HANI-------LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CSCT-------TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEe-------cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            4322       257788999999986 47788899999777654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-36  Score=295.77  Aligned_cols=286  Identities=22%  Similarity=0.352  Sum_probs=239.9

Q ss_pred             CCCcceeecccCCCCcccccccccCCCCCCCCCCCCC--------------CcceEEEEecCCcceEEEEEccCCCEEEE
Q 011457          127 GKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHA--------------PWKCYRVISGHLGWVRSVAFDHSNTWFCT  192 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~--------------~~~~~~~l~~H~~~V~~l~~sp~~~~l~t  192 (485)
                      +|++.|.+++|++++.++++++ |..+++|.......              .........+|...|++++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            5899999999999999999976 88999997643211              01112233468888999999999999999


Q ss_pred             EeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCC
Q 011457          193 GSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID  272 (485)
Q Consensus       193 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~  272 (485)
                      |+.||.|++||...++....+.+|...|.++.|++++..+++++.++.|++||..+.........+...+....+.++++
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  218 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999988888775555554444455789


Q ss_pred             EEEEEECCCcEEEEECCCCceEEEec-------cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE----------
Q 011457          273 ILLTGGRDSVCRVWDIRTKMQIFALA-------GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT----------  335 (485)
Q Consensus       273 ~l~sg~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~----------  335 (485)
                      +|++|+.||.|++||++++..+..+.       +|...|.++.|+|++++|++++.||.|++||++++..          
T Consensus       219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  298 (388)
T d1erja_         219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  298 (388)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc
Confidence            99999999999999999988776653       5888999999999999999999999999999976543          


Q ss_pred             --EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEe------CCCC-eEEEEeCC
Q 011457          336 --MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAV------NEEG-VLATGGDN  405 (485)
Q Consensus       336 --~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~------~~~~-~l~sg~~d  405 (485)
                        ......|...|.+++|+|++.+|++++.++ |++||+.+++.+..+ ..|...|.++++      +|++ +|++|+.|
T Consensus       299 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l-~~H~~~V~~~~~~~~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred             ceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-eCCCCCEEEEEEecCcccCCCCCEEEEEeCC
Confidence              334556788999999999999999999888 999999999998876 567788888875      5677 89999999


Q ss_pred             CcEEEEeCC
Q 011457          406 GSLWFWDWK  414 (485)
Q Consensus       406 g~I~iwd~~  414 (485)
                      |+|+||+++
T Consensus       378 g~I~iW~~~  386 (388)
T d1erja_         378 CKARIWKYK  386 (388)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEeee
Confidence            999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-35  Score=279.05  Aligned_cols=284  Identities=21%  Similarity=0.384  Sum_probs=229.9

Q ss_pred             EEEEecCCcce-EEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011457          168 YRVISGHLGWV-RSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDL  246 (485)
Q Consensus       168 ~~~l~~H~~~V-~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~  246 (485)
                      ..+|+||.+.| +|++|  ++++|+||+.||+|+|||+.+++.+.++.+|.+.|.+++|+++ .+|++|+.|+.|++|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            56789999886 66665  5889999999999999999999999999999999999999985 58999999999999999


Q ss_pred             CCCeeEEEecccC--CceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe-----------------------ccCC
Q 011457          247 EQNKVIRSYHGHL--SGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL-----------------------AGHD  301 (485)
Q Consensus       247 ~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----------------------~~~~  301 (485)
                      ...+.........  .......+++++.++++++.|+.|++||+++.......                       ..|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            9998877665433  34556677888999999999999999999875443221                       2233


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee
Q 011457          302 NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       302 ~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      ..+..  +.+++++++++..|+.|++||+++++.+.....+...+.++.++|++.++++++.++ +++|+..++..+..+
T Consensus       162 ~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         162 ASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             SCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccc--cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence            33433  345678999999999999999999999999999999999999999999999998887 999999999988875


Q ss_pred             ccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEE-EEEccCCCEEEEEECCCcEE
Q 011457          381 LSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA-LSYDVTGSRLVTCEADKTIK  459 (485)
Q Consensus       381 ~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s~~g~~L~s~~~Dg~I~  459 (485)
                       ..|...|.++.++++ +|++|+.||.|++||+.++......          |...+.+ ..+++++.+|++| .||.|+
T Consensus       240 -~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~g-~d~~i~  306 (355)
T d1nexb2         240 -QGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFSY----------HHTNLSAITTFYVSDNILVSG-SENQFN  306 (355)
T ss_dssp             -CCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCEEEEE----------ECTTCCCCCEEEECSSEEEEE-ETTEEE
T ss_pred             -ccccccccccccccc-eeeeeecccccccccccccceeccc----------ccCCceEEEEEcCCCCEEEEE-eCCEEE
Confidence             567888999999764 8999999999999999887543222          2223333 3567777766665 599999


Q ss_pred             EecCCCCCCC
Q 011457          460 MWREDETATP  469 (485)
Q Consensus       460 iW~~~~~~~~  469 (485)
                      |||+.+++..
T Consensus       307 vwd~~tg~~~  316 (355)
T d1nexb2         307 IYNLRSGKLV  316 (355)
T ss_dssp             EEETTTCCBC
T ss_pred             EEECCCCCEE
Confidence            9999887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-34  Score=271.84  Aligned_cols=282  Identities=19%  Similarity=0.368  Sum_probs=253.1

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..||.+.|.++++++++.++++++.|+.+++|+..    ..+.+..+.+|.+.|++++|+|++.++++|+.|+.+++|+.
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY----TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----TTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecc----cceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            35799999999999999999999999999999764    35788899999999999999999999999999999999997


Q ss_pred             CCC----ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457          205 AKG----TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       205 ~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      ...    .....+.+|........... +..+.....|.....|+............+...+....+.+.+.++++|+.|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            654    34566777877766665554 4567788899999999999888888888888999999999999999999999


Q ss_pred             CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec--cCCCceEEEEECCCCCEE
Q 011457          281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT--HHKKSVRAMALHPTEDCF  358 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l  358 (485)
                      +.|++||+++++.+..+.+|...|++++|+|++++|++|+.||.|++||++....+..+.  .+...|.+++|+|++.+|
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence            999999999999999999999999999999999999999999999999999988877654  455679999999999999


Q ss_pred             EEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEe
Q 011457          359 ASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWD  412 (485)
Q Consensus       359 ~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd  412 (485)
                      ++++.++ |++||+.+++.+..+ .+|...|.+++|+|++ +|++|+.||.|++||
T Consensus       286 ~~g~~dg~i~iwd~~~~~~~~~~-~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999887 999999999988876 5678899999999999 999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-33  Score=265.92  Aligned_cols=280  Identities=15%  Similarity=0.218  Sum_probs=222.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCC-eEEEEECCCC--ceEEEEcccc-cCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC
Q 011457          176 GWVRSVAFDHSNTWFCTGSADR-TIKIWDVAKG--TLKLTLTGHI-EQVRGLAVSS--KHTYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg-~I~iwd~~~~--~~~~~~~~h~-~~V~~l~~s~--~~~~l~s~~~dg~V~iwd~~~~  249 (485)
                      +.+++++|+|+++.|+.++.+. .|+.|+....  .....+.+|. ..|++++|+|  ++.+|++|+.||+|+|||+..+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            3467899999999999887654 3566765443  4466778874 6799999998  5689999999999999998754


Q ss_pred             ee--------EEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCE-EEE
Q 011457          250 KV--------IRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQ-VVT  318 (485)
Q Consensus       250 ~~--------~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s  318 (485)
                      +.        ...+..|.++|.+++|++++++|++++.  ++.+.+|+.++++.+..+.+|...|.+++|+|++++ +++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            32        2334568899999999999999888765  678999999999999999999999999999998875 678


Q ss_pred             EeCCCCEEEEECCCCeEEeEec---cCCCceEEEEECCC-CCEEEEEcCCC-EEEEECCCCceeeeeccCCcc----cEE
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLT---HHKKSVRAMALHPT-EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKT----IIN  389 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~---~~~~~v~~l~~~p~-~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~----~i~  389 (485)
                      ++.|+.|++||....+....+.   .+...|.+++|+|+ +.+|++++.++ |++||.++++.+..+. .|..    .+.
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~~~~~v~~~~~  256 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIF  256 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEE
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-cccccccccee
Confidence            9999999999999887766553   45678999999997 67888888776 9999999999888764 3333    345


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCcc--EEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          390 SMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAG--IYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       390 ~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~--V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                      ++.+.+..+|++++.||.|+|||+++++.+..+...      .+...  ..++.+.++ .+|++++.||.|+|||+
T Consensus       257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD------KQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC------TTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             eeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec------CCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            555555459999999999999999998877655421      12222  344555544 48999999999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-33  Score=269.01  Aligned_cols=279  Identities=13%  Similarity=0.154  Sum_probs=226.3

Q ss_pred             eecccCCCCcccccccc-cCCCCCCCCCCCCCCcceEEEEecCC-cceEEEEEcc--CCCEEEEEeCCCeEEEEECCCCc
Q 011457          133 VSTSASSERNLSTSAIM-ERIPSKWPRPEWHAPWKCYRVISGHL-GWVRSVAFDH--SNTWFCTGSADRTIKIWDVAKGT  208 (485)
Q Consensus       133 ~~~~~~~~~~~~~t~~~-~~~~~~w~~~~~~~~~~~~~~l~~H~-~~V~~l~~sp--~~~~l~tgs~dg~I~iwd~~~~~  208 (485)
                      ..++++++++.++.+.. ...++.|...  ......+..+.+|. ..|++++|+|  ++.+|++|+.||+|+|||+..++
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~--~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDG--DSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSS--CCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCC--CCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            45567788887765543 3345566543  34456677788885 6799999998  56899999999999999986543


Q ss_pred             e--------EEEEcccccCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEecccCCceEEEEEecCCC-EEEEE
Q 011457          209 L--------KLTLTGHIEQVRGLAVSSKHTYMFSAGD--DKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTID-ILLTG  277 (485)
Q Consensus       209 ~--------~~~~~~h~~~V~~l~~s~~~~~l~s~~~--dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~sg  277 (485)
                      .        ...+..|.++|.+++|++++++|++++.  ++.+++|+.++++.+..+.+|...|.+++|+|+++ +++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence            2        2334568899999999999999988764  67899999999999999999999999999999877 47789


Q ss_pred             ECCCcEEEEECCCCceEEEec---cCCccEEEEEEcCC-CCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEEC-
Q 011457          278 GRDSVCRVWDIRTKMQIFALA---GHDNTVCSVFTRPT-DPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALH-  352 (485)
Q Consensus       278 ~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~~~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~-  352 (485)
                      +.|+.|++||+...+....+.   .|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..|...+.++.|+ 
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~  258 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL  258 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred             ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeee
Confidence            999999999998877666554   56778999999996 6889999999999999999999999999888877665555 


Q ss_pred             --CCCCEEEEEcCCC-EEEEECCCCceeeeeccCCc-c--cEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          353 --PTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQK-T--IINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       353 --p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~-~--~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                        |++.+|++++.|+ |++||+.+++.+..+..+.. .  ...++.+.++++|++|+.||.|++||+
T Consensus       259 ~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence              6889999999888 99999999998887643322 2  234555666679999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-33  Score=263.32  Aligned_cols=270  Identities=17%  Similarity=0.191  Sum_probs=220.4

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      .+++++|+||.++|++++|+|    |+||+.||+|++||+.++     ..+|...|.++++++++ .+++++.|++|++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            368899999999999999987    999999999999998754     36799999999998765 57899999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC-
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS-  323 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg-  323 (485)
                      ++...+       ....+.++.+++++..+++ +.++.+.+|+..+++.+..+..+ ..+.  ++++++..+++++.++ 
T Consensus        73 ~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~~  141 (287)
T d1pgua2          73 GITKHE-------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLN-SPGS--AVSLSQNYVAVGLEEGN  141 (287)
T ss_dssp             TEEEEE-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECS-SCEE--EEEECSSEEEEEETTTS
T ss_pred             cccccc-------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeecccc-ceee--eeeccCcceeeeccccc
Confidence            875321       3456778889988766555 56667899999999888887643 4444  4566778888888775 


Q ss_pred             CEEEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCC-----
Q 011457          324 TIKFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEE-----  396 (485)
Q Consensus       324 ~I~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----  396 (485)
                      .|++|++...+....+. .+...+.+++|+|++.+|++++.++ |++||+.+++........|...|.+++|+|.     
T Consensus       142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  221 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN  221 (287)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred             eeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccc
Confidence            69999998766655554 4667899999999999999998887 9999999998887777888899999999864     


Q ss_pred             -----C-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecC
Q 011457          397 -----G-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWRE  463 (485)
Q Consensus       397 -----~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~  463 (485)
                           + +|++|+.||.|++||++++......       ...|...|++++|++++ .|++++.||+|++|++
T Consensus       222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~-------~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-------LNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             --CCSCCEEEEEETTSCEEEEESSCTTCCEEE-------TTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cccCCCCeeEeecCCCeEEEEECCCCCeEEEE-------eCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                 3 7999999999999999764322211       12578899999999986 6899999999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-32  Score=254.50  Aligned_cols=284  Identities=23%  Similarity=0.399  Sum_probs=227.3

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCW  244 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iw  244 (485)
                      .+.+..+.+|...|+|++|  ++++||||+.||+|+|||+.+++++.++.+|...|.+++|  ++++|++|+.|+.|++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            3455666789999999765  7899999999999999999999999999999999999987  57899999999999999


Q ss_pred             ECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce---EEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          245 DLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ---IFALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       245 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      ++..+........+....  ..+.+....++++..++.+.+||......   ...+..|...+..+.+.  ...+++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~  156 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG  156 (293)
T ss_dssp             ESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred             cccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccC
Confidence            999998887776554443  34555667899999999999999987653   44556788888888775  457889999


Q ss_pred             CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEE
Q 011457          322 DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA  400 (485)
Q Consensus       322 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  400 (485)
                      |+.|++||+++++.+..+..+...+..+.++  +.++++++.++ |++||+.+...+... ..+...+..+... ..+|+
T Consensus       157 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~  232 (293)
T d1p22a2         157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL-EGHEELVRCIRFD-NKRIV  232 (293)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEECC-SSEEE
T ss_pred             CCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee-cccceeeeecccc-ceEEE
Confidence            9999999999999999999988888888775  56788887776 999999999888775 4555666654433 23999


Q ss_pred             EEeCCCcEEEEeCCCCcccccceee-eccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEec
Q 011457          401 TGGDNGSLWFWDWKSGHNFQQAQTI-VQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWR  462 (485)
Q Consensus       401 sg~~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~  462 (485)
                      +|+.||.|++||+.++......... .......|...|++++|+  +++|+||+.||+|+|||
T Consensus       233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            9999999999998654332221110 000113578889999995  67899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-32  Score=259.69  Aligned_cols=280  Identities=19%  Similarity=0.200  Sum_probs=228.4

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEE-ecCCcceEEEEEccCCCEEEEEeCCCeEEEEE
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVI-SGHLGWVRSVAFDHSNTWFCTGSADRTIKIWD  203 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l-~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd  203 (485)
                      ..||...|.+++++|++.++++++.|+.+++|+...    .++.+.+ .+|.+.|++++|+|++. +++++.|+.+++|+
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~----~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST----GISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC----CcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            357999999999999999999999999999997643    4556666 47999999999999987 45666899999999


Q ss_pred             CCCCce---EEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC
Q 011457          204 VAKGTL---KLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD  280 (485)
Q Consensus       204 ~~~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d  280 (485)
                      ......   ......+...+.+++|++++.++++++ ++.+++|+..  +.....  ....+.+++|+|++++|++|+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEETT
T ss_pred             cCCccccccccccccccccccccccccccccccccc-cccccccccc--cccccc--ccccccccccccccccccccccc
Confidence            765432   222345778899999999999777665 5789999854  333333  34567899999999999999999


Q ss_pred             CcEEEEECCCCceEE-EeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe---EeccCCCceEEEEECCCCC
Q 011457          281 SVCRVWDIRTKMQIF-ALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML---TLTHHKKSVRAMALHPTED  356 (485)
Q Consensus       281 g~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~---~~~~~~~~v~~l~~~p~~~  356 (485)
                      |.|++||+++++... ....|...|.+++|+|++.+|++++.|+.|++||+.++....   .+..|...|.+++|+|++.
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  237 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  237 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998876543 344689999999999999999999999999999998876544   4556888999999999999


Q ss_pred             EEEEEcCCC-EEEEECCCCceee--eeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          357 CFASASAEN-IKKFNLPKGEFLH--NMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       357 ~l~~~~~~~-i~i~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      +|++++.|+ |++||+.++....  ....++...+.++.+.++.+|++|+.||.|++||+.
T Consensus       238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            999999887 9999998775433  223445567888888777799999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-32  Score=259.24  Aligned_cols=292  Identities=12%  Similarity=0.100  Sum_probs=221.8

Q ss_pred             ceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEE---EEcccccCEEEEEEcCCC-CEEEEEeCCCcE
Q 011457          166 KCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKL---TLTGHIEQVRGLAVSSKH-TYMFSAGDDKQV  241 (485)
Q Consensus       166 ~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~---~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~V  241 (485)
                      +++.++++|.+.|++|+|+|++++||+|+.||+|+|||+.++....   ...+|...|.+++|+|++ .+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            5677888999999999999999999999999999999997664432   334699999999999864 589999999999


Q ss_pred             EEEECCCCeeEEEecccCC-ceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE----eccC--CccEEEEEEcCCCC
Q 011457          242 KCWDLEQNKVIRSYHGHLS-GVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA----LAGH--DNTVCSVFTRPTDP  314 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~~--~~~v~~l~~~~~~~  314 (485)
                      ++|++..+........+.. ......+.++...+++++.|+.+++||++.+.....    ...+  ......+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999998877766654443 445566677888999999999999999975443222    2222  23445566777888


Q ss_pred             EEEEEeCCCCEEEEECCCCeEEe---EeccCCCceEEEEEC-CCCCEEEEEcCCC-EEEEECCCCceeee----------
Q 011457          315 QVVTGSHDSTIKFWDLRYGKTML---TLTHHKKSVRAMALH-PTEDCFASASAEN-IKKFNLPKGEFLHN----------  379 (485)
Q Consensus       315 ~l~s~s~dg~I~iwd~~~~~~~~---~~~~~~~~v~~l~~~-p~~~~l~~~~~~~-i~i~d~~~~~~~~~----------  379 (485)
                      .+++++.|+.|++||++......   ........+.+..+. .++..+++++.++ +.+|+.........          
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            99999999999999998765432   223334455555554 4677888888777 88888754422111          


Q ss_pred             ----eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          380 ----MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       380 ----~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                          ....+...+++++|+|++ +|++|+.||.|++||+++++.+..+..         ...+..++|+++|++|++++.
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~---------~~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK---------FNEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC---------CSSSEEEEEEECSSEEEEEEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC---------CCCCEEEEEEeCCCEEEEEEc
Confidence                012345678999999999 999999999999999999877655432         223445778888999999999


Q ss_pred             CCcEEEecCCCC
Q 011457          455 DKTIKMWREDET  466 (485)
Q Consensus       455 Dg~I~iW~~~~~  466 (485)
                      |+++++|.....
T Consensus       313 dd~~~~~~~~~~  324 (342)
T d1yfqa_         313 DDTFKTNAAIDQ  324 (342)
T ss_dssp             CTHHHHCSSSCT
T ss_pred             CCcEEEeeeeCC
Confidence            999999976544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-30  Score=248.17  Aligned_cols=277  Identities=28%  Similarity=0.495  Sum_probs=227.0

Q ss_pred             CCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 011457          126 SGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVA  205 (485)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~  205 (485)
                      .||.+.|.+ .+++++++++|++.|+.+++|+..    ..++++++.+|.+.|.+++|+|+  +|++|+.|+.+++|+..
T Consensus        13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~----~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV----TGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT----TCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECC----CCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence            468888876 366788999999999999999764    36788999999999999999864  89999999999999987


Q ss_pred             CCceEEEEcccccCEEE--------------------------------------EEEcCCCCEEEEEeCCCcEEEEECC
Q 011457          206 KGTLKLTLTGHIEQVRG--------------------------------------LAVSSKHTYMFSAGDDKQVKCWDLE  247 (485)
Q Consensus       206 ~~~~~~~~~~h~~~V~~--------------------------------------l~~s~~~~~l~s~~~dg~V~iwd~~  247 (485)
                      ..........+...+..                                      ..+.+...++++++.|+.|++||+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~  165 (342)
T d2ovrb2          86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE  165 (342)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred             cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence            66544433322222211                                      1223345578889999999999999


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                      ..+.+..+.+|...+..+.+  ++.+|++|+.||.|++||++.++.+..+.+|...+.++.++  +++|++++.||.|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         166 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKI  241 (342)
T ss_dssp             GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             cceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEE
Confidence            99999999988877766554  67899999999999999999999999999999999998886  469999999999999


Q ss_pred             EECCCCeEEeEecc---CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeec----cCCcccEEEEEeCCCC-e
Q 011457          328 WDLRYGKTMLTLTH---HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNML----SQQKTIINSMAVNEEG-V  398 (485)
Q Consensus       328 wd~~~~~~~~~~~~---~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~----~~~~~~i~~~~~~~~~-~  398 (485)
                      ||+...+....+..   |...+.++.++  +.++++++.|+ |++||+++++.+..+.    .++...|++++|+|++ +
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~  319 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV  319 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             EecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE
Confidence            99999888777765   34566666665  56889998887 9999999999888764    3456789999999999 8


Q ss_pred             EEEEeCCCc----EEEEeCCC
Q 011457          399 LATGGDNGS----LWFWDWKS  415 (485)
Q Consensus       399 l~sg~~dg~----I~iwd~~~  415 (485)
                      |++|+.||+    |++||+..
T Consensus       320 la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         320 CAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEeCCCCCeeEEEEEeCCC
Confidence            899999985    99999863

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-30  Score=255.49  Aligned_cols=293  Identities=17%  Similarity=0.258  Sum_probs=218.7

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCce------EEEEcccccCEEEEEE------cC-CCCEEEE
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTL------KLTLTGHIEQVRGLAV------SS-KHTYMFS  234 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~------~~~~~~h~~~V~~l~~------s~-~~~~l~s  234 (485)
                      ....++|.+.|.+++++  +++|+|++.|++|+|||..+.+.      ......|...+..+..      +. ++.++++
T Consensus         7 ~~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            45567999999999986  46899999999999999765532      2233334444433322      11 2356789


Q ss_pred             EeCCCcEEEEECCCCeeEE-----Ee-----cccCCceEEEEEecC-----CCEEEEEECCCcEEEEECCCCc-------
Q 011457          235 AGDDKQVKCWDLEQNKVIR-----SY-----HGHLSGVYCLGLHPT-----IDILLTGGRDSVCRVWDIRTKM-------  292 (485)
Q Consensus       235 ~~~dg~V~iwd~~~~~~~~-----~~-----~~h~~~v~~l~~~~~-----~~~l~sg~~dg~i~iwd~~~~~-------  292 (485)
                      ++.||.|++|++.......     ..     ..+...+..++|.++     +.++++++.||.+++||+....       
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            9999999999976443211     11     234566788888775     4689999999999999985321       


Q ss_pred             ----e-------EEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe------ccCCCceEEEEECCCC
Q 011457          293 ----Q-------IFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL------THHKKSVRAMALHPTE  355 (485)
Q Consensus       293 ----~-------~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~------~~~~~~v~~l~~~p~~  355 (485)
                          .       ......+...+.+++|+|++ +|++|+.||+|++||+.+++++..+      .+|..+|++++|+|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence                0       11112345678899999987 8999999999999999999877654      4578899999999999


Q ss_pred             CEEEEEcCCC----EEEEECCCCceeeeec------------cCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcc
Q 011457          356 DCFASASAEN----IKKFNLPKGEFLHNML------------SQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHN  418 (485)
Q Consensus       356 ~~l~~~~~~~----i~i~d~~~~~~~~~~~------------~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~  418 (485)
                      .+|++++.|+    |++||+.+++.+..+.            .+|...|++++|+|++ +|++|+.||+|++||++++++
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence            9999998875    8999999998877653            3678889999999999 999999999999999999988


Q ss_pred             cccceeeecc-------------CCCCCCccEEEEEEccCC----------CEEEEEECCCcEEEecC
Q 011457          419 FQQAQTIVQP-------------GSLDSEAGIYALSYDVTG----------SRLVTCEADKTIKMWRE  463 (485)
Q Consensus       419 ~~~~~~~~~~-------------~~~~~~~~V~~l~~s~~g----------~~L~s~~~Dg~I~iW~~  463 (485)
                      +..+......             +.......+.++.|.+.+          ..|++++.|+.|++|+.
T Consensus       324 ~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             EEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence            7766432111             111123457788876643          45888999999999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=5.5e-32  Score=261.15  Aligned_cols=322  Identities=12%  Similarity=0.062  Sum_probs=248.0

Q ss_pred             ecccCC-CCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCC--eEEEEECCCCceE
Q 011457          134 STSASS-ERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADR--TIKIWDVAKGTLK  210 (485)
Q Consensus       134 ~~~~~~-~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg--~I~iwd~~~~~~~  210 (485)
                      +..||| +++++++++ +..+.+|+...     .....+ +|.+.|.+++|+|||++|++++.+.  .|++||+.+++..
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~-----~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSG-----TYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTS-----SBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCC-----CcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            345888 898888765 45677886643     223333 7999999999999999998877653  7999999887655


Q ss_pred             EEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEE----------CC
Q 011457          211 LTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGG----------RD  280 (485)
Q Consensus       211 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~----------~d  280 (485)
                       .+..|...|.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.++          .+
T Consensus        80 -~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          80 -KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             -ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             -EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence             5677999999999999999999999999999999999999999999999999999999999998654          34


Q ss_pred             CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE-------EeEeccCCCceEEEEECC
Q 011457          281 SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT-------MLTLTHHKKSVRAMALHP  353 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p  353 (485)
                      +.+++||+.+++... +..+...+..+.|+|++++|++++.++.+.+||......       ...+..+...+..+.|++
T Consensus       159 ~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  237 (360)
T d1k32a3         159 QAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP  237 (360)
T ss_dssp             EEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC
T ss_pred             cceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECC
Confidence            569999999876544 445778889999999999999999999999999765432       223333444455556667


Q ss_pred             CCCEEEEEcCC------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC----eEEEEeCCCcEEEEeCCCCcccccce
Q 011457          354 TEDCFASASAE------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG----VLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       354 ~~~~l~~~~~~------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~----~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      ++..+..+..+      .+..++...+....  ...+...+..+.+...+    ++++++.++.|++||+.+++...   
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---  312 (360)
T d1k32a3         238 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRM--IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---  312 (360)
T ss_dssp             GGGSCCCCCCCCTTGGGGCEECSCCCBCEEE--EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---
T ss_pred             CcCcccccceeecccccceeecccCcCceeE--eeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE---
Confidence            66655544322      14444444444322  12233444555555443    67888899999999998865421   


Q ss_pred             eeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCCCCCCC
Q 011457          424 TIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHPLNFKP  478 (485)
Q Consensus       424 ~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~~~~~p  478 (485)
                               +...|.+++|+|||++|++++.||.|++|+++.+..+.+..+++.|
T Consensus       313 ---------~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~  358 (360)
T d1k32a3         313 ---------VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP  358 (360)
T ss_dssp             ---------EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred             ---------ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence                     2345899999999999999999999999999999999888888887

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-28  Score=229.16  Aligned_cols=264  Identities=15%  Similarity=0.205  Sum_probs=218.6

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      ..||...|.++.+++    ++|++.|+.+.+|+...         ...+|.+.|.++++++++ .+++++.|++|++|++
T Consensus         9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~---------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS---------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGI   74 (287)
T ss_dssp             ECCCSSCEEEEETTT----TEEEETTSCEEETTTTE---------EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTE
T ss_pred             ECCCCCceEEEEECc----EEEEeCCCeEEEEECCC---------CCCCCCCCEEEEEecCCC-eEEEEeeccccccccc
Confidence            357999999999986    89999999999997532         346899999999998765 5899999999999986


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC-cE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS-VC  283 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg-~i  283 (485)
                      ...+       ....+.++.+++++..++++ .++.+.+|+..+++.+..+..+ ..+  .+++++++.+++++.|+ .+
T Consensus        75 ~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          75 TKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             EEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCE
T ss_pred             cccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeeeccCcceeeecccccee
Confidence            4321       34567888999888776665 5667899999999988888633 333  45677788888888875 69


Q ss_pred             EEEECCCCceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe-EeccCCCceEEEEECCC-------
Q 011457          284 RVWDIRTKMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML-TLTHHKKSVRAMALHPT-------  354 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~-------  354 (485)
                      ++|++...+....+. .|...+++++|+|++.+|++|+.||.|++||+.+++... .+..|...|.+++|+|.       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccc
Confidence            999998776666554 477889999999999999999999999999999988765 46778899999999875       


Q ss_pred             ---CCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          355 ---EDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       355 ---~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                         +.+|++++.|+ |++|++.++.........|...|+++.|++++.|++++.||.|++|++
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence               46899998887 999999886655566678899999999999999999999999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-27  Score=222.04  Aligned_cols=271  Identities=23%  Similarity=0.452  Sum_probs=224.7

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      .+.++..|.+.++  ++++++|++.|+.+++|+..    ..++++++.+|.+.|++++|  ++++|++|+.|+.|++|++
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~----~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN----TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS----SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECC----CCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            3457778887654  68899999999999999764    36789999999999999987  5789999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEecccCCceEEEEEecCCCEEEEEECCC
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNK---VIRSYHGHLSGVYCLGLHPTIDILLTGGRDS  281 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg  281 (485)
                      ..+........+.....  .+.+....++++..++.+.+|+..+..   ....+..|...|.++.+.+  ..+++++.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~  158 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDR  158 (293)
T ss_dssp             SSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTS
T ss_pred             ccccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCC
Confidence            99988877765554433  445566789999999999999998764   3455567888898888765  5788999999


Q ss_pred             cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457          282 VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA  361 (485)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~  361 (485)
                      .|++||+++++.+..+.++...+..+.++  +.++++++.||.|++||+++.+.+..+..+...+..  +.+++.+|+++
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg  234 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSG  234 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEE
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEE
Confidence            99999999999999999999999888875  568999999999999999999999999888888775  45677889988


Q ss_pred             cCCC-EEEEECCCCc--------eeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEe
Q 011457          362 SAEN-IKKFNLPKGE--------FLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWD  412 (485)
Q Consensus       362 ~~~~-i~i~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd  412 (485)
                      +.++ |++||+..+.        .....+..|...|.+++|++. +|++|+.||+|++||
T Consensus       235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS-CEEECCSSSEEEEEC
T ss_pred             cCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC-EEEEEecCCEEEEeC
Confidence            8887 9999975322        122234677888999999643 899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1e-27  Score=227.69  Aligned_cols=263  Identities=11%  Similarity=0.089  Sum_probs=196.5

Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---EEecccCCceEEEEEecCC-CEEEEEECCCcE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVI---RSYHGHLSGVYCLGLHPTI-DILLTGGRDSVC  283 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~-~~l~sg~~dg~i  283 (485)
                      +++...++|.+.|++|+|+|++++|++|+.||+|+|||++++...   ....+|...|.+++|+|++ .+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            455667889999999999999999999999999999999765432   2334699999999999874 589999999999


Q ss_pred             EEEECCCCceEEEeccCCc-cEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe----EeccC--CCceEEEEECCCCC
Q 011457          284 RVWDIRTKMQIFALAGHDN-TVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML----TLTHH--KKSVRAMALHPTED  356 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~----~~~~~--~~~v~~l~~~p~~~  356 (485)
                      ++|++...........+.. ......+.++...+++++.|+.+++||++.+....    ....+  ......+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999998887777665444 34455666788899999999999999987543222    22222  23445667778888


Q ss_pred             EEEEEcCCC-EEEEECCCCceeeee--ccCCcccEEEEEeCC-CC-eEEEEeCCCcEEEEeCCCCccccccee-------
Q 011457          357 CFASASAEN-IKKFNLPKGEFLHNM--LSQQKTIINSMAVNE-EG-VLATGGDNGSLWFWDWKSGHNFQQAQT-------  424 (485)
Q Consensus       357 ~l~~~~~~~-i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~-~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~-------  424 (485)
                      .+++++.++ +++|++.........  .......+.+..+.+ ++ .+++++.||.+.+|++...........       
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            899888887 999999876543322  223334455555444 44 899999999999999876543322111       


Q ss_pred             eeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          425 IVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       425 ~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                      ........|...|++++|+|++++|++|+.||.|+|||+++.....
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence            0111234567789999999999999999999999999998876443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.1e-27  Score=231.04  Aligned_cols=273  Identities=14%  Similarity=0.191  Sum_probs=207.5

Q ss_pred             CCCCCcceeecccCCCCcccccccccCCCCCCCCCCC--CCCcceEEEEecCCcceEEEEEcc-------CCCEEEEEeC
Q 011457          125 ASGKSSAIVSTSASSERNLSTSAIMERIPSKWPRPEW--HAPWKCYRVISGHLGWVRSVAFDH-------SNTWFCTGSA  195 (485)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~~t~~~~~~~~~w~~~~~--~~~~~~~~~l~~H~~~V~~l~~sp-------~~~~l~tgs~  195 (485)
                      ..+|...|.+++.++  +.++|++.|+.+++|.....  ..|.........|...+..+....       ++.++++++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            357999999887654  57889999999999974332  334444555556776655444321       3357889999


Q ss_pred             CCeEEEEECCCCceEE-----EE-----cccccCEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCe----------
Q 011457          196 DRTIKIWDVAKGTLKL-----TL-----TGHIEQVRGLAVSSK-----HTYMFSAGDDKQVKCWDLEQNK----------  250 (485)
Q Consensus       196 dg~I~iwd~~~~~~~~-----~~-----~~h~~~V~~l~~s~~-----~~~l~s~~~dg~V~iwd~~~~~----------  250 (485)
                      ||.|++|++.......     ..     ..+...+..++|.++     +.++++++.||.|++|++....          
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            9999999975443211     11     224566788888765     4688999999999999974221          


Q ss_pred             -----e---EEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe------ccCCccEEEEEEcCCCCEE
Q 011457          251 -----V---IRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL------AGHDNTVCSVFTRPTDPQV  316 (485)
Q Consensus       251 -----~---~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~l~~~~~~~~l  316 (485)
                           .   ......+...+.+++|+|++ +|++|+.||+|++||+.+++.+..+      .+|...|.+++|+|++++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence                 1   11112455668999999997 8999999999999999998877654      4688999999999999999


Q ss_pred             EEEeCCCC---EEEEECCCCeEEeEec-------------cCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeee
Q 011457          317 VTGSHDST---IKFWDLRYGKTMLTLT-------------HHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHN  379 (485)
Q Consensus       317 ~s~s~dg~---I~iwd~~~~~~~~~~~-------------~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~  379 (485)
                      ++|+.|++   |++||+.+++.+..+.             +|...|.+++|+|++++|++++.|+ |++||+.+++.+..
T Consensus       247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT  326 (393)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEE
Confidence            99999875   9999999998877764             6888999999999999999999988 99999999999888


Q ss_pred             eccCCcccEE----EEEeCCCC-eEEE
Q 011457          380 MLSQQKTIIN----SMAVNEEG-VLAT  401 (485)
Q Consensus       380 ~~~~~~~~i~----~~~~~~~~-~l~s  401 (485)
                      + .+|...|.    .+++++++ .+++
T Consensus       327 l-~gH~~~v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         327 L-NMHCDDIEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             E-ECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             E-CCcCCcccCCccEEEECCCCCEEEE
Confidence            6 45655544    46777777 5443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1.9e-24  Score=202.51  Aligned_cols=274  Identities=14%  Similarity=0.152  Sum_probs=216.2

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecccCCceEEEEEe
Q 011457          190 FCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLH  268 (485)
Q Consensus       190 l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  268 (485)
                      +++++.|++|.|||+++++.+.++... ..+..++|+|+|++|+ +++.++.|++||+.+++.+..+..+. .+..+.|+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccc
Confidence            456778999999999999999988744 5678999999999875 56688999999999999999998665 56889999


Q ss_pred             cCCCEEEE-EECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE-EEeCCCCEEEEECCCCeEEeEeccCCCce
Q 011457          269 PTIDILLT-GGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV-TGSHDSTIKFWDLRYGKTMLTLTHHKKSV  346 (485)
Q Consensus       269 ~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~~v  346 (485)
                      +++..+++ +..++.+.+|+..+++....+.. .....++.++|++..++ ++..++.+.+|+..+.+.+..+..+ ..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  160 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP  160 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred             cccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence            99986554 55677899999999988888774 45678899999998875 4556788999999999988887654 457


Q ss_pred             EEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe---CCCcEEEEeCCCCcccc
Q 011457          347 RAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG---DNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       347 ~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~---~dg~I~iwd~~~~~~~~  420 (485)
                      ..+.++|++..+++++.+.  +.+|+....+.....  ........+.+++++ .+++++   .++.|++||..+++...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~  238 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA  238 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             eEEEeeccccceeeecccccccccccccceeeeecc--cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE
Confidence            8899999999888777654  667777666655543  233456778899988 444433   34689999999987765


Q ss_pred             cceeeeccCCCCCCccEEEEEEccCCCEE-EEEECCCcEEEecCCCCCCCCCCCCCCCC
Q 011457          421 QAQTIVQPGSLDSEAGIYALSYDVTGSRL-VTCEADKTIKMWREDETATPETHPLNFKP  478 (485)
Q Consensus       421 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~L-~s~~~Dg~I~iW~~~~~~~~~~~~~~~~p  478 (485)
                      .+.         ....+.+++|+|||++| ++++.|+.|++||+.++....+.++...|
T Consensus       239 ~~~---------~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~P  288 (301)
T d1l0qa2         239 RIP---------VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP  288 (301)
T ss_dssp             EEE---------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEc---------CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCCCC
Confidence            543         23458999999999987 56778999999999998877666665554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=3e-25  Score=220.12  Aligned_cols=283  Identities=11%  Similarity=0.040  Sum_probs=203.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE--e---cccCC
Q 011457          186 SNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRS--Y---HGHLS  260 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~--~---~~h~~  260 (485)
                      .+-++++.+.||+|+|||+.+++.+.++..| ..+..++|+|||++|++++.|++|++||+.+++....  +   .+|..
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            3445688888999999999999999999977 4699999999999999999999999999998874432  2   35667


Q ss_pred             ceEEEEEecCCCEEEE-EECCCcEEEEECCCCceEEEeccCCccE-----------EEEEEcCCCCEEEEEeC-CCCEEE
Q 011457          261 GVYCLGLHPTIDILLT-GGRDSVCRVWDIRTKMQIFALAGHDNTV-----------CSVFTRPTDPQVVTGSH-DSTIKF  327 (485)
Q Consensus       261 ~v~~l~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~l~~~~~~~~l~s~s~-dg~I~i  327 (485)
                      .+.+++|+|||+++++ +..++.+.+||..++..+..+..|...+           ..+..++++..++.... .+.+.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            7778888999998755 4579999999999999888776654443           44555555555544333 234555


Q ss_pred             EECCCCeEE-eEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeee------------------------
Q 011457          328 WDLRYGKTM-LTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNM------------------------  380 (485)
Q Consensus       328 wd~~~~~~~-~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~------------------------  380 (485)
                      ++....... .....+...+..+.|+|++++++++..+.  +.+++..+++.....                        
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence            554443322 22334566788999999999888776554  777776655443211                        


Q ss_pred             -----------------------------ccCCcccEEEEEeCCCC-eEEE-------EeCCCcEEEEeCCCCcccccce
Q 011457          381 -----------------------------LSQQKTIINSMAVNEEG-VLAT-------GGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       381 -----------------------------~~~~~~~i~~~~~~~~~-~l~s-------g~~dg~I~iwd~~~~~~~~~~~  423 (485)
                                                   +..|...+..++++|++ +|++       +..+++|++||+.+++....+.
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence                                         12234457788999999 6663       4557899999999988765543


Q ss_pred             eeec-cCCCCCCccEEEEEEccCCCEEEEE-----ECCCcEEEecCCCCCCC
Q 011457          424 TIVQ-PGSLDSEAGIYALSYDVTGSRLVTC-----EADKTIKMWREDETATP  469 (485)
Q Consensus       424 ~~~~-~~~~~~~~~V~~l~~s~~g~~L~s~-----~~Dg~I~iW~~~~~~~~  469 (485)
                      .... .....+...|..++|+|||++++.+     +.||.|+|||..+.+..
T Consensus       350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            2211 1223456679999999999987543     35788999999887643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=5.1e-24  Score=202.49  Aligned_cols=273  Identities=11%  Similarity=0.067  Sum_probs=210.8

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEccc--ccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEecccCC----
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLKLTLTGH--IEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQNKVIRSYHGHLS----  260 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~~~~~~~~~~h~~----  260 (485)
                      +||++++.|++|+|||+++++.+.++..+  ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999999999888653  45678999999999875 567899999999999999988865433    


Q ss_pred             -ceEEEEEecCCCEEEEEE------------CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEE
Q 011457          261 -GVYCLGLHPTIDILLTGG------------RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKF  327 (485)
Q Consensus       261 -~v~~l~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~i  327 (485)
                       .+..++|+|+++++++++            .++.+.+||..+++....+. +...+..+.++++++++++++.  .+.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence             345789999999988876            46789999999998888877 4566888999999999998864  5788


Q ss_pred             EECCCCeEEeEeccCCCceEEEEECCCCCE------------------------EEEEc-CCCEEEEECCCCceeeeecc
Q 011457          328 WDLRYGKTMLTLTHHKKSVRAMALHPTEDC------------------------FASAS-AENIKKFNLPKGEFLHNMLS  382 (485)
Q Consensus       328 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~------------------------l~~~~-~~~i~i~d~~~~~~~~~~~~  382 (485)
                      ||..+++....+..+... ....+.+++..                        +.... ...+.+|+..++........
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence            999999888776543221 11111111110                        00111 12388899999887776666


Q ss_pred             CCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEEe
Q 011457          383 QQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKMW  461 (485)
Q Consensus       383 ~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW  461 (485)
                      .+...+..+.+++++ +++++  ++.|++||+.+++.+..+.         +...+.+++|+|||++|++++.||.|+||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~s~dG~~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---------LPHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---------CSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             CCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc---------CCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            777888889999998 44443  5899999999988776653         34567899999999999999999999999


Q ss_pred             cCCCCCCCCCCCCC
Q 011457          462 REDETATPETHPLN  475 (485)
Q Consensus       462 ~~~~~~~~~~~~~~  475 (485)
                      |..+.+.....++.
T Consensus       307 D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         307 DAETLEKKGQVDLP  320 (337)
T ss_dssp             ETTTCCEEEEEECG
T ss_pred             ECCCCcEEEEEECC
Confidence            99987765554443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.3e-24  Score=207.38  Aligned_cols=282  Identities=12%  Similarity=0.088  Sum_probs=210.8

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-cccCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEEeccc
Q 011457          181 VAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVSSKHTYMFS-AGDDKQVKCWDLEQNKVIRSYHGH  258 (485)
Q Consensus       181 l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s-~~~dg~V~iwd~~~~~~~~~~~~h  258 (485)
                      ++|++++++|++++.|++|.+||+.+++++.++.. |...+.+++|+|||+++++ ++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            47899999999999999999999999999998863 5667889999999998754 557899999999999998877532


Q ss_pred             C------CceEEEEEecCCCEEEEEE------------CCCcEEEEECCCCceEEEecc--CCccEEEEEEcCCCCEEEE
Q 011457          259 L------SGVYCLGLHPTIDILLTGG------------RDSVCRVWDIRTKMQIFALAG--HDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       259 ~------~~v~~l~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s  318 (485)
                      .      ..+..++|+|||+++++++            .++.+.+||..+++....+..  ....+..+.+++++..++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2      2356799999999888775            477899999988765544332  2344566667777765554


Q ss_pred             EeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEE--------------------------EEcCC-CEEEEEC
Q 011457          319 GSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFA--------------------------SASAE-NIKKFNL  371 (485)
Q Consensus       319 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~--------------------------~~~~~-~i~i~d~  371 (485)
                         ++.+.+||+.+++.+..+..+.. ...+.++|++..+.                          ++... .+.+|+.
T Consensus       162 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         162 ---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             ---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             ---CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence               35699999999988887754322 33334444433221                          11222 2778888


Q ss_pred             CCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEE
Q 011457          372 PKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLV  450 (485)
Q Consensus       372 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~  450 (485)
                      .++.........+...+..+.+++++ +++.+. ++.|.+||..+++.+....         ....+.+++|+|||++|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~---------~~~~~~~va~s~DG~~l~  307 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN---------LDHTYYCVAFDKKGDKLY  307 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE---------CSSCCCEEEECSSSSCEE
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc---------CCCCEEEEEEcCCCCEEE
Confidence            88887776666677778888888877 665554 4689999999987765543         234588999999999999


Q ss_pred             EEECCCcEEEecCCCCCCCCCCCCCC
Q 011457          451 TCEADKTIKMWREDETATPETHPLNF  476 (485)
Q Consensus       451 s~~~Dg~I~iW~~~~~~~~~~~~~~~  476 (485)
                      +++.||.|+|||..+.+.....++..
T Consensus       308 v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         308 LGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             EESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             EEeCCCcEEEEECccCCEEEEEECCC
Confidence            99999999999999887665555433

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=7e-25  Score=210.75  Aligned_cols=285  Identities=10%  Similarity=0.091  Sum_probs=216.1

Q ss_pred             CCCcceeecccCCCCccccccccc--CCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 011457          127 GKSSAIVSTSASSERNLSTSAIME--RIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDV  204 (485)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~~t~~~~--~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~  204 (485)
                      +|...|.++.|+|+++.+++++.+  ..+.+|+...     ...+.+..|.+.|.+++|+|++++|++++.++.+++|++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-----~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-----GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-----CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-----CcEEEeeCCCceEEeeeecccccccceeccccccccccc
Confidence            578889999999999988876655  3677886533     446678899999999999999999999999999999999


Q ss_pred             CCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEE
Q 011457          205 AKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL  274 (485)
Q Consensus       205 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  274 (485)
                      .+++....+..|...+.+++|+|++++|+.++          .++.+++||+.+++..... .+...+..+.|+|+|+.|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l  193 (360)
T d1k32a3         115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNL  193 (360)
T ss_dssp             TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEE
T ss_pred             cccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEE
Confidence            99999999999999999999999999998654          3457999999988766554 477888999999999999


Q ss_pred             EEEECCCcEEEEECCCCce-------EEEeccCCccEEEEEEcCCCCEEEEEeCCCC-----EEEEECCCCeEEeEeccC
Q 011457          275 LTGGRDSVCRVWDIRTKMQ-------IFALAGHDNTVCSVFTRPTDPQVVTGSHDST-----IKFWDLRYGKTMLTLTHH  342 (485)
Q Consensus       275 ~sg~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~-----I~iwd~~~~~~~~~~~~~  342 (485)
                      ++++.++.+.+||......       ...+..+...+..+.+++++..+.++..+..     +..++...+.. ..+..+
T Consensus       194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  272 (360)
T d1k32a3         194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPL  272 (360)
T ss_dssp             EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEEC
T ss_pred             EEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeec
Confidence            9999999999999865432       3334445555555666776666655444322     33334443332 233334


Q ss_pred             CCceEEEEECCCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCc
Q 011457          343 KKSVRAMALHPTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       343 ~~~v~~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~  417 (485)
                      ...+..+.+...+.   ++++++.++ +++||+.+++...     +...+..++|+||| +|++++.||.|++||+++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-----EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-----ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            44555555554433   555666665 9999998876432     23458999999999 99999999999999999987


Q ss_pred             ccccce
Q 011457          418 NFQQAQ  423 (485)
Q Consensus       418 ~~~~~~  423 (485)
                      ....+.
T Consensus       348 ~~~~~~  353 (360)
T d1k32a3         348 DERTVE  353 (360)
T ss_dssp             SCEECC
T ss_pred             cceEEE
Confidence            655543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=5.2e-23  Score=204.05  Aligned_cols=284  Identities=12%  Similarity=0.049  Sum_probs=205.4

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEe---ccc
Q 011457          184 DHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKV--IRSY---HGH  258 (485)
Q Consensus       184 sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~--~~~~---~~h  258 (485)
                      ++++-++++.+.||+|.|||..+++++..+..+ ..+..++|+|||++|++++.|+.|++||+.+++.  +..+   ..|
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            334445688999999999999999999999877 4699999999999999999999999999988753  3333   356


Q ss_pred             CCceEEEEEecCCCEE-EEEECCCcEEEEECCCCceEEEeccC-----------CccEEEEEEcCCCCEE-EEEeCCCCE
Q 011457          259 LSGVYCLGLHPTIDIL-LTGGRDSVCRVWDIRTKMQIFALAGH-----------DNTVCSVFTRPTDPQV-VTGSHDSTI  325 (485)
Q Consensus       259 ~~~v~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~l~~~~~~~~l-~s~s~dg~I  325 (485)
                      .+.+.+..|+|||++| ++++.++.|++||..+++.+..+..+           ......+.+++++..+ ++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            6667777888999976 67888999999999999988776543           3456778899998876 456677999


Q ss_pred             EEEECCCCeEEeEec-cCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccC-------------------
Q 011457          326 KFWDLRYGKTMLTLT-HHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQ-------------------  383 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~-------------------  383 (485)
                      .+||..+.+...... .+...+..++|+|+|+++++++.+.  +.+++..+++....+..+                   
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~  267 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP  267 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred             EEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCc
Confidence            999998877554333 3456788999999999888776554  888888766554332111                   


Q ss_pred             ------------------------CcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccc----eeee----c---
Q 011457          384 ------------------------QKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQA----QTIV----Q---  427 (485)
Q Consensus       384 ------------------------~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~----~~~~----~---  427 (485)
                                              +...+....+++++ .+++++.+...++|+..+.......    ....    .   
T Consensus       268 ~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s  347 (432)
T d1qksa2         268 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG  347 (432)
T ss_dssp             EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred             eecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccc
Confidence                                    00123444556665 6777777777777765443211000    0000    0   


Q ss_pred             -------------cCCCCCCccEEEEEEccCCCEEEEEE-----CCCcEEEecCCCCCC
Q 011457          428 -------------PGSLDSEAGIYALSYDVTGSRLVTCE-----ADKTIKMWREDETAT  468 (485)
Q Consensus       428 -------------~~~~~~~~~V~~l~~s~~g~~L~s~~-----~Dg~I~iW~~~~~~~  468 (485)
                                   ....++...|.+++|+|||++|+.+.     .||.|.|||..+.+.
T Consensus       348 ~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         348 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence                         00113556789999999999886554     468899999988765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=3.1e-21  Score=180.19  Aligned_cols=267  Identities=14%  Similarity=0.092  Sum_probs=209.5

Q ss_pred             cccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEcccccCEEEEE
Q 011457          146 SAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLA  224 (485)
Q Consensus       146 t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~  224 (485)
                      +...+..+.+|+..    ..+.++.+... +.+..++|+|+|++| ++++.++.|++||+.+++.+..+..+. .+..+.
T Consensus         7 ~~~~~~~v~v~D~~----t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~   80 (301)
T d1l0qa2           7 ANSESDNISVIDVT----SNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (301)
T ss_dssp             EETTTTEEEEEETT----TTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EECCCCEEEEEECC----CCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccc
Confidence            33445566777653    35677777643 557899999999987 466678999999999999999988765 568999


Q ss_pred             EcCCCCEEEE-EeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEE-EEECCCcEEEEECCCCceEEEeccCCc
Q 011457          225 VSSKHTYMFS-AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILL-TGGRDSVCRVWDIRTKMQIFALAGHDN  302 (485)
Q Consensus       225 ~s~~~~~l~s-~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~  302 (485)
                      |++++.++++ +..++.+.+|+..+++....+. +...+.++.|+|+++.++ ++..++.+.+|+..+...+..+.. ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  158 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GR  158 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CS
T ss_pred             cccccccccccccccceeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CC
Confidence            9999986654 5577899999999999988887 446678999999998765 455688899999999988888764 45


Q ss_pred             cEEEEEEcCCCCEEEEEeCC-CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC---C-EEEEECCCCcee
Q 011457          303 TVCSVFTRPTDPQVVTGSHD-STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE---N-IKKFNLPKGEFL  377 (485)
Q Consensus       303 ~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~---~-i~i~d~~~~~~~  377 (485)
                      .+..+.+++++..+++++.+ +.+.+|+....+....+.. ...+..+++++++..++.+..+   + +.+||..+++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            67889999999988887766 5677777777766665544 4557889999999987655433   2 999999999988


Q ss_pred             eeeccCCcccEEEEEeCCCC-eE-EEEeCCCcEEEEeCCCCcccccce
Q 011457          378 HNMLSQQKTIINSMAVNEEG-VL-ATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       378 ~~~~~~~~~~i~~~~~~~~~-~l-~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      ..+..  ...+..++|+|+| +| ++++.++.|++||+++++.+..+.
T Consensus       238 ~~~~~--~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         238 ARIPV--GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEcC--CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            77533  3457899999999 55 677789999999999998776654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.3e-22  Score=200.93  Aligned_cols=276  Identities=11%  Similarity=0.004  Sum_probs=199.0

Q ss_pred             ccccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE-----cccc
Q 011457          143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTL-----TGHI  217 (485)
Q Consensus       143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~-----~~h~  217 (485)
                      ++++...+..+.+|+.    ...+.+.++..|. .+..++|+|||++|++++.|++|++||+.+++.....     .+|.
T Consensus        34 ~~V~~~~dg~v~vwD~----~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~  108 (426)
T d1hzua2          34 FSVTLRDAGQIALVDG----DSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR  108 (426)
T ss_dssp             EEEEETTTTEEEEEET----TTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred             EEEEEcCCCEEEEEEC----CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc
Confidence            4466677888999966    3578889998875 5999999999999999999999999999988754332     3566


Q ss_pred             cCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCce-----------EEEEEecCCCEEEEEEC-CCcEE
Q 011457          218 EQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSGV-----------YCLGLHPTIDILLTGGR-DSVCR  284 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~~~~l~sg~~-dg~i~  284 (485)
                      +.+.+++|+|||++|+++ ..++.+++||..+++++..+..|...+           ..+.+++++..++.... .+.+.
T Consensus       109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~  188 (426)
T d1hzua2         109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  188 (426)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            777788889999987554 588999999999999888876655444           44555555554444333 34455


Q ss_pred             EEECCCCce-EEEeccCCccEEEEEEcCCCCEEEEEeCC-CCEEEEECCCC-----------------------------
Q 011457          285 VWDIRTKMQ-IFALAGHDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLRYG-----------------------------  333 (485)
Q Consensus       285 iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~~~-----------------------------  333 (485)
                      +++...... ......+...+..+.++|++++++++..+ ..+.+++..++                             
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (426)
T d1hzua2         189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW  268 (426)
T ss_dssp             EEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred             EEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceE
Confidence            555544432 22333567788899999999887766543 34556655443                             


Q ss_pred             -------------------------eEEeEeccCCCceEEEEECCCCCEEEEEc-------C-CCEEEEECCCCceeeee
Q 011457          334 -------------------------KTMLTLTHHKKSVRAMALHPTEDCFASAS-------A-ENIKKFNLPKGEFLHNM  380 (485)
Q Consensus       334 -------------------------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-------~-~~i~i~d~~~~~~~~~~  380 (485)
                                               +....+.+|...+..++|+|++.++++..       . +.+++||+.+++...++
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             EeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence                                     23334556677789999999999999632       2 34999999998876654


Q ss_pred             c--------cCCcccEEEEEeCCCC-eE-EEE----eCCCcEEEEeCCCCcccccce
Q 011457          381 L--------SQQKTIINSMAVNEEG-VL-ATG----GDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       381 ~--------~~~~~~i~~~~~~~~~-~l-~sg----~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      .        ..+...+..++|+||| ++ +++    +.+|.|+|||.++++....+.
T Consensus       349 ~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         349 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             ECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             eccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence            2        2345568899999999 45 333    357889999999988665543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=9.6e-20  Score=176.00  Aligned_cols=286  Identities=9%  Similarity=-0.039  Sum_probs=209.3

Q ss_pred             cCCcceEEEEEccCCCEEEEEe-----CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------C
Q 011457          173 GHLGWVRSVAFDHSNTWFCTGS-----ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------D  237 (485)
Q Consensus       173 ~H~~~V~~l~~sp~~~~l~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~  237 (485)
                      .|.+++.+++++|+++.++...     .++.|.+||..+++.+.++..+...  .++|+|||++|++++          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            6889999999999999887652     3467999999999999988766544  799999999999875          3


Q ss_pred             CCcEEEEECCCCeeEEEecccCCce-------EEEEEecCCCEEEEEE--CCCcEEEEECCCCceEEEeccCCccEEEEE
Q 011457          238 DKQVKCWDLEQNKVIRSYHGHLSGV-------YCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGHDNTVCSVF  308 (485)
Q Consensus       238 dg~V~iwd~~~~~~~~~~~~h~~~v-------~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  308 (485)
                      ++.|.+||+.+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....+.....    ....++.
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  171 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYH  171 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEE
Confidence            5789999999999998886655443       4578888888665554  4567889998877654433    3456788


Q ss_pred             EcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccC------CCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeec
Q 011457          309 TRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHH------KKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNML  381 (485)
Q Consensus       309 ~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~  381 (485)
                      ++++++.+ ++.+.|+.+.+||...++.......+      ......+.+.+++.+++....+.+.+|+...+.......
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  251 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEe
Confidence            89988754 67889999999999988776654322      123445667777777766666668899887765432211


Q ss_pred             -cCC----------cccEEEEEeCCCC-----------eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEE
Q 011457          382 -SQQ----------KTIINSMAVNEEG-----------VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYA  439 (485)
Q Consensus       382 -~~~----------~~~i~~~~~~~~~-----------~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~  439 (485)
                       ...          ......+.+++++           .++....++.+.+||..+++.+..+.         +...+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---------~~~~~~~  322 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---------LGHDVDA  322 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec---------CCCCeeE
Confidence             000          1112233344433           44566677889999999988766543         4566889


Q ss_pred             EEEccCCCE--EEEEECCCcEEEecCCCCCCCCCCC
Q 011457          440 LSYDVTGSR--LVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       440 l~~s~~g~~--L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                      ++|+|||+.  +++++.|++|+|||..+++.....+
T Consensus       323 ~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            999999984  4678899999999999988766655

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.1e-20  Score=179.22  Aligned_cols=271  Identities=14%  Similarity=0.065  Sum_probs=207.6

Q ss_pred             ccccccccCCCCCCCCCCCCCCcceEEEEec--CCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEEEccccc-
Q 011457          143 LSTSAIMERIPSKWPRPEWHAPWKCYRVISG--HLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLTLTGHIE-  218 (485)
Q Consensus       143 ~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~--H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~-  218 (485)
                      ++.+++.+..+.+|+...    .+++..+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.. 
T Consensus         3 ~~vt~~~d~~v~v~D~~s----~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEETTTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             EEEEEcCCCEEEEEECCC----CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            466777888889997743    577777764  44668899999999987 5667899999999999999988876543 


Q ss_pred             ----CEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCc
Q 011457          219 ----QVRGLAVSSKHTYMFSAG------------DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSV  282 (485)
Q Consensus       219 ----~V~~l~~s~~~~~l~s~~------------~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~  282 (485)
                          .+..++|+|++++++++.            .++.+.+||..+++.+..+. +...+.+++|+|+|+++++++.+  
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--  155 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--
Confidence                345789999999998876            46789999999999998887 45668899999999999998654  


Q ss_pred             EEEEECCCCceEEEeccCCccEEEEEEcCC------------------------CCEEEEEeCCCCEEEEECCCCeEEe-
Q 011457          283 CRVWDIRTKMQIFALAGHDNTVCSVFTRPT------------------------DPQVVTGSHDSTIKFWDLRYGKTML-  337 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~------------------------~~~l~s~s~dg~I~iwd~~~~~~~~-  337 (485)
                      +.+||..+++....+..+.... ...+.++                        ......+..++.+.+||..++.... 
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             cceeeeecCcEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence            7889999988877765322110 0111111                        1111222334568999998887654 


Q ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCC
Q 011457          338 TLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       338 ~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      .+..+...+..+.++|++.+++++. +.+.+||+.+++.+..+.  ....+.+++|+|+| +|++++.+|.|++||..++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         235 EVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEE-SEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             EecCCCcceEEEEecccceEEEEcc-ccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            3455677888999999999887664 569999999999988764  34567899999999 8999999999999999998


Q ss_pred             ccccccee
Q 011457          417 HNFQQAQT  424 (485)
Q Consensus       417 ~~~~~~~~  424 (485)
                      +.+..++.
T Consensus       312 ~~v~~i~~  319 (337)
T d1pbyb_         312 EKKGQVDL  319 (337)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEEC
Confidence            88776653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=4.4e-21  Score=182.63  Aligned_cols=280  Identities=10%  Similarity=0.032  Sum_probs=212.7

Q ss_pred             cccCCCCcccccccccCCCCCCCCCCCCCCcceEEEEe-cCCcceEEEEEccCCCEE-EEEeCCCeEEEEECCCCceEEE
Q 011457          135 TSASSERNLSTSAIMERIPSKWPRPEWHAPWKCYRVIS-GHLGWVRSVAFDHSNTWF-CTGSADRTIKIWDVAKGTLKLT  212 (485)
Q Consensus       135 ~~~~~~~~~~~t~~~~~~~~~w~~~~~~~~~~~~~~l~-~H~~~V~~l~~sp~~~~l-~tgs~dg~I~iwd~~~~~~~~~  212 (485)
                      +++++++.+++++..+..+.+|+...    .++++++. .|...+.+++|+|||+++ ++++.++.|++||+.+++....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t----~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT----TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC----CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            46788899999999999999997743    58888887 567788999999999987 5556789999999999998887


Q ss_pred             Ecccc------cCEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEeccc--CCceEEEEEecCCC
Q 011457          213 LTGHI------EQVRGLAVSSKHTYMFSAG------------DDKQVKCWDLEQNKVIRSYHGH--LSGVYCLGLHPTID  272 (485)
Q Consensus       213 ~~~h~------~~V~~l~~s~~~~~l~s~~------------~dg~V~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~  272 (485)
                      +....      ..+..++|+|+|+++++++            .++.+.+|+..+++....+..+  ...+..+.+++++.
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence            75432      2456789999999988775            4778999999887765544322  34466677777776


Q ss_pred             EEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCC--------------------------CEEEEEeCCCCEE
Q 011457          273 ILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD--------------------------PQVVTGSHDSTIK  326 (485)
Q Consensus       273 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--------------------------~~l~s~s~dg~I~  326 (485)
                      ++++   ++.+.+||+.+++.+..+..+. ....+.++|++                          ..+.++..++.+.
T Consensus       158 ~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
T d1jmxb_         158 LYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  233 (346)
T ss_dssp             EEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             EEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence            6554   3568999999988887775432 12222223322                          2233445566788


Q ss_pred             EEECCCCeEEeE-eccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC
Q 011457          327 FWDLRYGKTMLT-LTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD  404 (485)
Q Consensus       327 iwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~  404 (485)
                      +||+.++..... +..+...+..+.+++++.+++....+.+.+||..+++.+..+..  ...+.+++|++|| +|++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESB
T ss_pred             EEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC--CCCEEEEEEcCCCCEEEEEeC
Confidence            899988776543 45677788999999999988888888899999999998887643  3458899999999 9999999


Q ss_pred             CCcEEEEeCCCCccccccee
Q 011457          405 NGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       405 dg~I~iwd~~~~~~~~~~~~  424 (485)
                      ||.|++||..+++.+..+..
T Consensus       312 d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         312 FNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             SSEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEEECccCCEEEEEEC
Confidence            99999999999988876654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.9e-19  Score=170.52  Aligned_cols=272  Identities=10%  Similarity=0.161  Sum_probs=189.7

Q ss_pred             EEEEEeCCCeEEEEECCCCceEE--EEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEe---cccCCce
Q 011457          189 WFCTGSADRTIKIWDVAKGTLKL--TLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNKVIRSY---HGHLSGV  262 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~---~~h~~~v  262 (485)
                      .+++++.|++|++|++.+...+.  ....|.+.+..|+|+|||++|++++ .|+.|++|++........+   ..+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            45778899999999997654322  2235788999999999999996655 5899999999766433222   2244567


Q ss_pred             EEEEEecCCCEEEEEEC-CCcEEEEECCCCceEEE--eccCCccEEEEEEcCCCCEEEEEeCC-CCEEEEECCCCeEEeE
Q 011457          263 YCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIFA--LAGHDNTVCSVFTRPTDPQVVTGSHD-STIKFWDLRYGKTMLT  338 (485)
Q Consensus       263 ~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~s~d-g~I~iwd~~~~~~~~~  338 (485)
                      ..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++++++++++++.+ ..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            78999999999999886 67899998876654433  33566778899999999988877754 5699999876533221


Q ss_pred             ------eccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCcee----eeec-----cCCcccEEEEEeCCCC--eE
Q 011457          339 ------LTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFL----HNML-----SQQKTIINSMAVNEEG--VL  399 (485)
Q Consensus       339 ------~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~----~~~~-----~~~~~~i~~~~~~~~~--~l  399 (485)
                            ..........++|++++.+++......  ..+++.......    ....     .........+.+++++  .+
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                  122345678899999999887665443  677765433211    1111     1122446678889998  55


Q ss_pred             EEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC-CCcEEEecCCC
Q 011457          400 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA-DKTIKMWREDE  465 (485)
Q Consensus       400 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~-Dg~I~iW~~~~  465 (485)
                      +++..++.+.+|++.............     .....+.+++|+|||++|++++. ++.|.+|+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQ-----PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEE-----ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEe-----CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            566678899999987665444333221     12344677899999999887764 68999997654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=7.5e-19  Score=173.77  Aligned_cols=191  Identities=13%  Similarity=0.052  Sum_probs=150.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCce--EEEe---ccCCc
Q 011457          228 KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQ--IFAL---AGHDN  302 (485)
Q Consensus       228 ~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~---~~~~~  302 (485)
                      +.-++++.+.||+|.+||..+++++..+..+ ..+..++|+|||+++++++.|+.|++||+.+++.  +..+   .+|.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            3344688899999999999999999999866 4699999999999999999999999999988764  2333   24556


Q ss_pred             cEEEEEEcCCCCEE-EEEeCCCCEEEEECCCCeEEeEeccC-----------CCceEEEEECCCCCEEEEEc-CCC-EEE
Q 011457          303 TVCSVFTRPTDPQV-VTGSHDSTIKFWDLRYGKTMLTLTHH-----------KKSVRAMALHPTEDCFASAS-AEN-IKK  368 (485)
Q Consensus       303 ~v~~l~~~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~-----------~~~v~~l~~~p~~~~l~~~~-~~~-i~i  368 (485)
                      .+.+..|+|||++| ++++.++.|++||..+++.+..+..+           ......+.++|++..++.+. .++ +.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            66777788999986 67888999999999999988776543           33466789999998766544 334 999


Q ss_pred             EECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCCccc
Q 011457          369 FNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNF  419 (485)
Q Consensus       369 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~  419 (485)
                      |+..+++............+..+.++|+| ++++++ .++.+.++|..+++..
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            99988876654444556678899999999 555554 4568889998876554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=6.6e-18  Score=161.49  Aligned_cols=282  Identities=12%  Similarity=0.004  Sum_probs=187.9

Q ss_pred             eEEEEEccCCCEEEEEe-----CCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CCCcEE
Q 011457          178 VRSVAFDHSNTWFCTGS-----ADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DDKQVK  242 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~V~  242 (485)
                      +.-.+.+||++.+++..     .++.|.+||..+++.+.++..+...  .++|+|||++|++.+          .|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            33345689999887653     4568999999999999988766544  799999999887653          478999


Q ss_pred             EEECCCCeeEEEecccC-------CceEEEEEecCCCEEEEEE--CCCcEEEEECCCCceEEEeccCCccEEEEEEcCCC
Q 011457          243 CWDLEQNKVIRSYHGHL-------SGVYCLGLHPTIDILLTGG--RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD  313 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~  313 (485)
                      +||+.+++.+..+..+.       .....++|+++++.++++.  .+..+.+||..+++.+..+..+.....   +....
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  158 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI---FPTAP  158 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE---EEEET
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE---eecCC
Confidence            99999999888775332       2235689999999887775  467899999999988887764432211   11112


Q ss_pred             CEEEEEeCCCCEEEEECCCCeEEeEe------ccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee-ccCC-
Q 011457          314 PQVVTGSHDSTIKFWDLRYGKTMLTL------THHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM-LSQQ-  384 (485)
Q Consensus       314 ~~l~s~s~dg~I~iwd~~~~~~~~~~------~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~-~~~~-  384 (485)
                      ...+..+.||...++..........+      ..+...+....+.+++..++.++.++ +++|++..+...... ...+ 
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  238 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  238 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence            23333344444444433322221111      11233455567777777777777666 999999887643211 1111 


Q ss_pred             ---------cccEEEEEeCCCC-eEEEEeCC----------CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc
Q 011457          385 ---------KTIINSMAVNEEG-VLATGGDN----------GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV  444 (485)
Q Consensus       385 ---------~~~i~~~~~~~~~-~l~sg~~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  444 (485)
                               ......+++++++ .++....+          ..|.+||..+++.+..+..         ...+.+++|+|
T Consensus       239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~---------~~~~~~~a~sp  309 (355)
T d2bbkh_         239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---------GHEIDSINVSQ  309 (355)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---------EEEECEEEECC
T ss_pred             cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC---------CCCEEEEEEcC
Confidence                     1122347788888 44443332          3699999999887665542         34588999999


Q ss_pred             CCC--EEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          445 TGS--RLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       445 ~g~--~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                      ||+  ++++++.|+.|+|||..+++...+.+
T Consensus       310 DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         310 DEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            998  34567789999999999887655444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=9.9e-16  Score=147.31  Aligned_cols=282  Identities=11%  Similarity=0.003  Sum_probs=192.9

Q ss_pred             CcceeecccCCCCcccccc---cccC--CCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEe---------
Q 011457          129 SSAIVSTSASSERNLSTSA---IMER--IPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGS---------  194 (485)
Q Consensus       129 ~~~i~~~~~~~~~~~~~t~---~~~~--~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs---------  194 (485)
                      ...+...+++|++..+...   ..+.  .+.+|+.    ...+.+..+.++...  .++|+|||++|++++         
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~----~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDA----GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEEC----CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            3344455566766654322   1122  2334432    346777777766654  799999999998875         


Q ss_pred             -CCCeEEEEECCCCceEEEEcccccCE-------EEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEecccCCceEE
Q 011457          195 -ADRTIKIWDVAKGTLKLTLTGHIEQV-------RGLAVSSKHTYMFSAG--DDKQVKCWDLEQNKVIRSYHGHLSGVYC  264 (485)
Q Consensus       195 -~dg~I~iwd~~~~~~~~~~~~h~~~V-------~~l~~s~~~~~l~s~~--~dg~V~iwd~~~~~~~~~~~~h~~~v~~  264 (485)
                       .++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....+.....    ....+
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  169 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTC  169 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----cccee
Confidence             35789999999999988887665443       4578888888766554  4578899998887765544    34578


Q ss_pred             EEEecCCCE-EEEEECCCcEEEEECCCCceEEEeccC------CccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe
Q 011457          265 LGLHPTIDI-LLTGGRDSVCRVWDIRTKMQIFALAGH------DNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML  337 (485)
Q Consensus       265 l~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~  337 (485)
                      +.++|+++. +++.+.|+.+.+||...+........+      ......+.+.+++ .++..+.++.+.+|+...+....
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEE
Confidence            899999874 568889999999999988776655422      2223445555555 45566788999999988765432


Q ss_pred             E--eccC----------CCceEEEEECCCCCEEEEE----------cC-CCEEEEECCCCceeeeeccCCcccEEEEEeC
Q 011457          338 T--LTHH----------KKSVRAMALHPTEDCFASA----------SA-ENIKKFNLPKGEFLHNMLSQQKTIINSMAVN  394 (485)
Q Consensus       338 ~--~~~~----------~~~v~~l~~~p~~~~l~~~----------~~-~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~  394 (485)
                      .  ....          ......+++++++..++..          .. +.+.+||..+++.+..+.  ....+..++|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~s  326 (373)
T d2madh_         249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVA  326 (373)
T ss_pred             EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeEEEEC
Confidence            2  1111          1223445666666554432          22 238999999999888763  44568899999


Q ss_pred             CCC---eEEEEeCCCcEEEEeCCCCcccccce
Q 011457          395 EEG---VLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       395 ~~~---~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                      |||   ++++++.|+.|++||+.+++.+..+.
T Consensus       327 pDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         327 QDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            998   34678899999999999999877664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3e-16  Score=148.05  Aligned_cols=272  Identities=12%  Similarity=0.183  Sum_probs=185.3

Q ss_pred             cccccccCCCCCCCCCCCCCCcceEEEEecCCcceEEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEc---ccccC
Q 011457          144 STSAIMERIPSKWPRPEWHAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGTLKLTLT---GHIEQ  219 (485)
Q Consensus       144 ~~t~~~~~~~~~w~~~~~~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~---~h~~~  219 (485)
                      .+++..++.+.+|.... ....+.+..+ .|.+.|.+|+|+|||++|++++ .|+.|++|++........+.   .+...
T Consensus         7 ~v~~~~~~~I~v~~~~~-~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNH-EGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEGGGTEEEEEEECT-TSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEECCCCCcEEEEEEcC-CCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            35556777788886543 1122333333 6889999999999999986555 58999999997665433332   24456


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEe--cccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEE
Q 011457          220 VRGLAVSSKHTYMFSAGD-DKQVKCWDLEQNKVIRSY--HGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIF  295 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~~-dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~  295 (485)
                      +..++|+|+|++|++++. ++.|.+|+..........  ..+...+.++.++|+++++++++. +..|.+|+........
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            778999999999999875 678999998776544333  456677889999999998888775 4569999987654332


Q ss_pred             Ee------ccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCe----EEeEec------cCCCceEEEEECCCCCEE
Q 011457          296 AL------AGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGK----TMLTLT------HHKKSVRAMALHPTEDCF  358 (485)
Q Consensus       296 ~~------~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~----~~~~~~------~~~~~v~~l~~~p~~~~l  358 (485)
                      ..      .........+.|++++..++... ..+...+|+.....    ....+.      ........++++++++++
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence            21      12345668899999998877654 45677888765422    111221      122356778999999977


Q ss_pred             EEEcCC--CEEEEECCCCceeeeec--cCCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeC--CCCc
Q 011457          359 ASASAE--NIKKFNLPKGEFLHNML--SQQKTIINSMAVNEEG-VLATGG-DNGSLWFWDW--KSGH  417 (485)
Q Consensus       359 ~~~~~~--~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~--~~~~  417 (485)
                      +.....  .+.+|++..........  ......+..++|+|+| +|++++ .++.|.+|++  .+|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            766544  38888876554333321  2233456789999999 666554 5689999955  5554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.4e-15  Score=145.04  Aligned_cols=252  Identities=12%  Similarity=0.063  Sum_probs=171.1

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEE----------eCCCeEEEEECCCCceEEEEccccc-------CEEEEEEcC
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTG----------SADRTIKIWDVAKGTLKLTLTGHIE-------QVRGLAVSS  227 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tg----------s~dg~I~iwd~~~~~~~~~~~~h~~-------~V~~l~~s~  227 (485)
                      .+.+..+..+...  .++|+|||++|++.          +.|+.|++||+.+++.+..+..+..       ....++|++
T Consensus        38 g~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~  115 (355)
T d2bbkh_          38 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  115 (355)
T ss_dssp             TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec
Confidence            4666777655444  79999999988764          3478999999999998887754332       234679999


Q ss_pred             CCCEEEEEe--CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe------cc
Q 011457          228 KHTYMFSAG--DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL------AG  299 (485)
Q Consensus       228 ~~~~l~s~~--~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~------~~  299 (485)
                      ++++++++.  .+..+.+|+..+++.+..+..+....   .+.......+..+.|+...++..........+      ..
T Consensus       116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~  192 (355)
T d2bbkh_         116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  192 (355)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce---EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce
Confidence            999888764  56789999999999988876443211   11111223333344444444433322222111      12


Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEe--EeccC----------CCceEEEEECCCCCEEEEEcCC---
Q 011457          300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTML--TLTHH----------KKSVRAMALHPTEDCFASASAE---  364 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~----------~~~v~~l~~~p~~~~l~~~~~~---  364 (485)
                      +...+....+.+++..++.++.++.+++|++..++...  ....+          ......+++++++..++....+   
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  272 (355)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence            33445556778888899999999999999998765422  11111          1223458899999877765322   


Q ss_pred             --------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCCCcccccce
Q 011457          365 --------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       365 --------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                              .+.+||..+++.+..+..  ...+.+++|+|+|   ++++++.|+.|++||.++++.+..+.
T Consensus       273 ~~~~~~~~~v~v~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             eeecCCCCeEEEEeCCCCcEEEEecC--CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence                    389999999998877643  3457899999998   34567779999999999998876654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=4e-16  Score=150.40  Aligned_cols=291  Identities=9%  Similarity=-0.069  Sum_probs=195.6

Q ss_pred             CCcceEEEEEccCCCEE--E-EEeCC--CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe----------CC
Q 011457          174 HLGWVRSVAFDHSNTWF--C-TGSAD--RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG----------DD  238 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l--~-tgs~d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~d  238 (485)
                      +.+....++..++++..  + +...+  ..|.+||..+++.+..+..+...  .++|+|+|++|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            34444455556677643  2 22333  45777899999999988877655  589999999988764          36


Q ss_pred             CcEEEEECCCCeeEEEecccCC-------ceEEEEEecCCCEEEEEE-CCCcEEEEECCCCceEEEeccCCccEEEEEEc
Q 011457          239 KQVKCWDLEQNKVIRSYHGHLS-------GVYCLGLHPTIDILLTGG-RDSVCRVWDIRTKMQIFALAGHDNTVCSVFTR  310 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  310 (485)
                      +.|.+||..+++.+..+..+..       ....++|+|||++|+++. .++.+.+||+.+++.+..+..+.....   +.
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~  172 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HP  172 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EE
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---cc
Confidence            7899999999999888754322       234689999999888776 579999999999998888765544321   11


Q ss_pred             CCCCEEEEEeCCCCEEEEECCCCeEEeEe------ccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeecc-C
Q 011457          311 PTDPQVVTGSHDSTIKFWDLRYGKTMLTL------THHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLS-Q  383 (485)
Q Consensus       311 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~------~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~-~  383 (485)
                      .....++..+.||.+.+|++.........      ..+...+....+.+++..+... .+.+++++...+........ .
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~~~~~~~~~~~~~~  251 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEECCSSCCEEECCCCS
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-CCCEEEEeecCCceEEEeeccc
Confidence            23456777788999988887755433222      2233445567777777655543 34466666655543322110 0


Q ss_pred             C----------cccEEEEEeCCCC-eEEEEeC-C--------CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457          384 Q----------KTIINSMAVNEEG-VLATGGD-N--------GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD  443 (485)
Q Consensus       384 ~----------~~~i~~~~~~~~~-~l~sg~~-d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  443 (485)
                      .          ......+++++++ .++.... +        ..|.+||..+++.+..+.         ....+.+++|+
T Consensus       252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~---------~~~~~~~~a~s  322 (368)
T d1mdah_         252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---------NGHDSDAIIAA  322 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---------EEEEECEEEEC
T ss_pred             ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec---------CCCceeEEEEC
Confidence            0          0112346777777 4333322 2        359999999998776654         23468899999


Q ss_pred             cCCCE--EEEEECCCcEEEecCCCCCCCCCCCCCCCCC
Q 011457          444 VTGSR--LVTCEADKTIKMWREDETATPETHPLNFKPP  479 (485)
Q Consensus       444 ~~g~~--L~s~~~Dg~I~iW~~~~~~~~~~~~~~~~p~  479 (485)
                      |||+.  ++++..|+.|+|||..+++.....++...|.
T Consensus       323 pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~  360 (368)
T d1mdah_         323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE  360 (368)
T ss_dssp             CSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred             CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCC
Confidence            99973  4566678999999999998888888776665

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=4.6e-14  Score=135.64  Aligned_cols=251  Identities=9%  Similarity=-0.017  Sum_probs=173.8

Q ss_pred             CcceEEEEecCCcceEEEEEccCCCEEEEEe----------CCCeEEEEECCCCceEEEEccccc-------CEEEEEEc
Q 011457          164 PWKCYRVISGHLGWVRSVAFDHSNTWFCTGS----------ADRTIKIWDVAKGTLKLTLTGHIE-------QVRGLAVS  226 (485)
Q Consensus       164 ~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~~-------~V~~l~~s  226 (485)
                      ..+.+..+.++...  .++|+|||++|++.+          .|+.|.+||..+++....+..+..       ....++|+
T Consensus        55 ~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S  132 (368)
T d1mdah_          55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC
Confidence            35667777766655  589999999888754          467899999999999888764432       22368999


Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe------cc
Q 011457          227 SKHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL------AG  299 (485)
Q Consensus       227 ~~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~------~~  299 (485)
                      |||++|+++. .++.|.+||+.+++.+..+..+.....   +......++..+.||.+.+|++.........      ..
T Consensus       133 pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~  209 (368)
T d1mdah_         133 ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA  209 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccc
Confidence            9999998876 579999999999999988865543321   1223456777788899888888755433222      22


Q ss_pred             CCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec--cC----------CCceEEEEECCCCCEEEEEcCC---
Q 011457          300 HDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT--HH----------KKSVRAMALHPTEDCFASASAE---  364 (485)
Q Consensus       300 ~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~----------~~~v~~l~~~p~~~~l~~~~~~---  364 (485)
                      +...+....+.+++..+.+  .++.+.+++...+.......  ..          ......+++++++..++....+   
T Consensus       210 ~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~  287 (368)
T d1mdah_         210 QNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR  287 (368)
T ss_dssp             SCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred             cccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc
Confidence            3444556677777655443  35667777766554332211  11          1123457888888866554221   


Q ss_pred             -------CEEEEECCCCceeeeeccCCcccEEEEEeCCCC---eEEEEeCCCcEEEEeCCCCcccccce
Q 011457          365 -------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG---VLATGGDNGSLWFWDWKSGHNFQQAQ  423 (485)
Q Consensus       365 -------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~sg~~dg~I~iwd~~~~~~~~~~~  423 (485)
                             .+.+||..+++.+..+.  ....+..++|++||   +++++..++.|++||..+++.+..+.
T Consensus       288 ~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         288 SCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             CTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             eeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence                   28899999999887753  34568889999998   24566778999999999998877665

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=1.5e-13  Score=136.60  Aligned_cols=289  Identities=9%  Similarity=-0.000  Sum_probs=171.3

Q ss_pred             ecCCcceEEEEEccCCCEEEEEeC---------CCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEE
Q 011457          172 SGHLGWVRSVAFDHSNTWFCTGSA---------DRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVK  242 (485)
Q Consensus       172 ~~H~~~V~~l~~sp~~~~l~tgs~---------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~  242 (485)
                      ..|...|.++.|||||++|+.++.         ++.+.|||+.+++. ..+..+...+..+.|+|||++|+.. .++.+.
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~  135 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIY  135 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEE
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccce
Confidence            356688999999999999998753         56889999998874 4578889999999999999999986 567899


Q ss_pred             EEECCCCeeEEEeccc------------------CCceEEEEEecCCCEEEEEECCCc-EEEEEC---------------
Q 011457          243 CWDLEQNKVIRSYHGH------------------LSGVYCLGLHPTIDILLTGGRDSV-CRVWDI---------------  288 (485)
Q Consensus       243 iwd~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~l~sg~~dg~-i~iwd~---------------  288 (485)
                      +|+..+++..+....+                  .+....+.|+|||+.|+....|.+ +..|++               
T Consensus       136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~  215 (470)
T d2bgra1         136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR  215 (470)
T ss_dssp             EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred             EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeee
Confidence            9999988776654321                  223456889999999998876533 333332               


Q ss_pred             --------------------CCCceEEEe-----------ccCCccEEEEEEcCCCCEEEEEe-CCC-----CEEEEECC
Q 011457          289 --------------------RTKMQIFAL-----------AGHDNTVCSVFTRPTDPQVVTGS-HDS-----TIKFWDLR  331 (485)
Q Consensus       289 --------------------~~~~~~~~~-----------~~~~~~v~~l~~~~~~~~l~s~s-~dg-----~I~iwd~~  331 (485)
                                          ..+......           ......+..+.|.+++..++... ..+     .+..+|..
T Consensus       216 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~  295 (470)
T d2bgra1         216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES  295 (470)
T ss_dssp             EECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred             eccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCC
Confidence                                111110000           01122356677887776555432 222     23344555


Q ss_pred             CCeEEeEec-------------cCCCceEEEEECCCCCEEEEEcCCC---EEEEECCCCceeeeeccCCcccEEEE-EeC
Q 011457          332 YGKTMLTLT-------------HHKKSVRAMALHPTEDCFASASAEN---IKKFNLPKGEFLHNMLSQQKTIINSM-AVN  394 (485)
Q Consensus       332 ~~~~~~~~~-------------~~~~~v~~l~~~p~~~~l~~~~~~~---i~i~d~~~~~~~~~~~~~~~~~i~~~-~~~  394 (485)
                      ++.......             .+........+.+++.++.....++   |++|+...+.. ..+. .....+..+ .++
T Consensus       296 tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt-~g~~~v~~~~~~d  373 (470)
T d2bgra1         296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFIT-KGTWEVIGIEALT  373 (470)
T ss_dssp             TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCC-EESC-CSSSCEEEEEEEC
T ss_pred             CCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCce-eeec-cCCeeEEEEEEEC
Confidence            555433211             0111122222233333445555554   66667654443 3333 334444444 444


Q ss_pred             CCCeEEEEeCCC----c--EEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEE---CCCcEEEecCCC
Q 011457          395 EEGVLATGGDNG----S--LWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCE---ADKTIKMWREDE  465 (485)
Q Consensus       395 ~~~~l~sg~~dg----~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~---~Dg~I~iW~~~~  465 (485)
                      .+.+++++..++    .  |+-.++..+.....+.    .....|...+..++|||||++++..+   ..-.+.+|+..+
T Consensus       374 ~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt----~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~  449 (470)
T d2bgra1         374 SDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS----CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN  449 (470)
T ss_dssp             SSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESS----TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred             CCEEEEEEecCCCCcceEEEEEEECCCCCceeEec----ccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCC
Confidence            444445544332    2  4444555443332221    11235677899999999999987433   334578888777


Q ss_pred             CCC
Q 011457          466 TAT  468 (485)
Q Consensus       466 ~~~  468 (485)
                      +..
T Consensus       450 g~~  452 (470)
T d2bgra1         450 DKG  452 (470)
T ss_dssp             TEE
T ss_pred             CCE
Confidence            654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=1.4e-13  Score=133.01  Aligned_cols=263  Identities=12%  Similarity=0.075  Sum_probs=177.3

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEcc------------------------------cccCEEEEEEcCCCCEEEEEe-CC
Q 011457          190 FCTGSADRTIKIWDVAKGTLKLTLTG------------------------------HIEQVRGLAVSSKHTYMFSAG-DD  238 (485)
Q Consensus       190 l~tgs~dg~I~iwd~~~~~~~~~~~~------------------------------h~~~V~~l~~s~~~~~l~s~~-~d  238 (485)
                      |++|+.+|.|+||++.+++.+.++.-                              |........++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67888999999999999998887621                              222344455678999997764 77


Q ss_pred             CcEEEEECCCCeeEEEec-ccCCceEEEEEecCCC--EEEEEECCC-----------------cEEEEECCCCceEEEec
Q 011457          239 KQVKCWDLEQNKVIRSYH-GHLSGVYCLGLHPTID--ILLTGGRDS-----------------VCRVWDIRTKMQIFALA  298 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~--~l~sg~~dg-----------------~i~iwd~~~~~~~~~~~  298 (485)
                      +.|.++|++++++.+.+. .+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999999888764 3567899999999998  555544432                 23568888888777776


Q ss_pred             cCCccEEEEEEcCCCCEEEEEeCC-----------------------------------------CCEEEEECCCCeEEe
Q 011457          299 GHDNTVCSVFTRPTDPQVVTGSHD-----------------------------------------STIKFWDLRYGKTML  337 (485)
Q Consensus       299 ~~~~~v~~l~~~~~~~~l~s~s~d-----------------------------------------g~I~iwd~~~~~~~~  337 (485)
                      . ......+.++|+|+++++.+.+                                         +.+.+++....+.+.
T Consensus       174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            4 3457889999999998887754                                         234444444444555


Q ss_pred             EeccCCCceEEEEECCCCCEEEEEcCC-C-EEEEECCCCceeee--------e--ccCCcccEEEEEeCCCC-eEEEEeC
Q 011457          338 TLTHHKKSVRAMALHPTEDCFASASAE-N-IKKFNLPKGEFLHN--------M--LSQQKTIINSMAVNEEG-VLATGGD  404 (485)
Q Consensus       338 ~~~~~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d~~~~~~~~~--------~--~~~~~~~i~~~~~~~~~-~l~sg~~  404 (485)
                      .+...+ ....+.++|||+++++++.. . +.+||+.+......        +  .....-......|.++| .+.+..-
T Consensus       253 ~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         253 YIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             EEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence            555433 35789999999988766543 3 99999865322100        0  00111123446799999 6677788


Q ss_pred             CCcEEEEeCCC------Ccccc-cceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          405 NGSLWFWDWKS------GHNFQ-QAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       405 dg~I~iwd~~~------~~~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      |..|..|++..      +.... ........-..+|...+.+.+++|||++|++++.
T Consensus       332 ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         332 DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            99999999742      11111 1111111111356666677789999999999943

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=1.3e-11  Score=122.19  Aligned_cols=141  Identities=9%  Similarity=0.075  Sum_probs=111.1

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc-----cccCEEEEEEcCCCCEEEEEeC---------CCcEEEEE
Q 011457          180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG-----HIEQVRGLAVSSKHTYMFSAGD---------DKQVKCWD  245 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~~---------dg~V~iwd  245 (485)
                      .+.|.++++++..  .|+.|.+||+.+++....+..     |...|.++.|+||+++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4668888887764  478899999999988765544     4578999999999999998753         57889999


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccC------------------CccEEEE
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGH------------------DNTVCSV  307 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~l  307 (485)
                      +++++. ..+..+...+....|+|||+.|+.. .++.+.+|+..+++.......+                  .+....+
T Consensus        99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            998874 5577788999999999999999985 5678999999988766543321                  2234568


Q ss_pred             EEcCCCCEEEEEeCCCC
Q 011457          308 FTRPTDPQVVTGSHDST  324 (485)
Q Consensus       308 ~~~~~~~~l~s~s~dg~  324 (485)
                      .|+|||++|+....|.+
T Consensus       177 ~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             EECTTSSEEEEEEEECT
T ss_pred             EECCCCCccceeEecCC
Confidence            89999999998766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=9.7e-09  Score=93.78  Aligned_cols=236  Identities=11%  Similarity=0.209  Sum_probs=171.4

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcc------cccCEEEEEEcCCC-CEEEEE-eCCCcEEEEECCC
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTG------HIEQVRGLAVSSKH-TYMFSA-GDDKQVKCWDLEQ  248 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~------h~~~V~~l~~s~~~-~~l~s~-~~dg~V~iwd~~~  248 (485)
                      .-..|+++++|+++++-..++.|++||. +++.+..+..      ....-..+++..+. .++++. +.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            4679999999998888777889999995 4777666632      12234556665543 444433 35567888875 4


Q ss_pred             CeeEEEec-ccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEe--ccCCccEEEEEEcCCCCEEEEEeCCCCE
Q 011457          249 NKVIRSYH-GHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFAL--AGHDNTVCSVFTRPTDPQVVTGSHDSTI  325 (485)
Q Consensus       249 ~~~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~s~s~dg~I  325 (485)
                      ++....+. ........+++.++++++++....+.+.+++.. ++.+..+  ..+......+++.++++.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence            66666663 345667899999999988888888889998864 4555554  3455678889999999888888888999


Q ss_pred             EEEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCC-cccEEEEEeCCCCeEE
Q 011457          326 KFWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQ-KTIINSMAVNEEGVLA  400 (485)
Q Consensus       326 ~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~  400 (485)
                      ++||.. ++.+..+..  .......|++.++|+++++-..++  |.+|+ ++|+.+..+.... ......+++.++|.|+
T Consensus       181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~  258 (279)
T d1q7fa_         181 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVV  258 (279)
T ss_dssp             EEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred             eeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence            999965 666666632  344578999999999887765443  77887 5788776654332 3457889999999777


Q ss_pred             EEeCCCcEEEEeCCCCc
Q 011457          401 TGGDNGSLWFWDWKSGH  417 (485)
Q Consensus       401 sg~~dg~I~iwd~~~~~  417 (485)
                      +...++.|++|.+....
T Consensus       259 V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         259 LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEETTTEEEEEECSCCC
T ss_pred             EEeCCCeEEEEEeeeec
Confidence            77889999999987643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=1.2e-09  Score=98.87  Aligned_cols=235  Identities=11%  Similarity=0.040  Sum_probs=154.3

Q ss_pred             ceEEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          177 WVRSVAFDHSNTWFCTG-SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      .-.+|+++++|+.+++. +..+.|..++............-......+++++++.++++....+.+++++-.+...+...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            34799999999966654 45577777765443332222222234578899999988777777777777765555554443


Q ss_pred             cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                      . ......++++.++++++++-..+..+..++............-......+++.++++.+++...++.|..+|......
T Consensus        95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             e-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence            3 335678999999999887776777788888765443332222234557899999999888888888999999876544


Q ss_pred             EeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 011457          336 MLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDW  413 (485)
Q Consensus       336 ~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~  413 (485)
                      .............|++.++|.++++....+ |..++..... ...+....-.....|++++++ ++++-..+++|+.++.
T Consensus       174 ~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         174 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            433333445678999999999888877666 7777654432 222222233456789999888 5555455666665553

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.24  E-value=3.4e-10  Score=108.87  Aligned_cols=228  Identities=10%  Similarity=0.042  Sum_probs=154.1

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEecc------------------------------cCCceEEEEEecCCCEEEEEE-CC
Q 011457          232 MFSAGDDKQVKCWDLEQNKVIRSYHG------------------------------HLSGVYCLGLHPTIDILLTGG-RD  280 (485)
Q Consensus       232 l~s~~~dg~V~iwd~~~~~~~~~~~~------------------------------h~~~v~~l~~~~~~~~l~sg~-~d  280 (485)
                      +++++.+|.|++|++.+++.++.+.-                              |..........|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            55777899999999999998887531                              223345555678999886665 68


Q ss_pred             CcEEEEECCCCceEEEec-cCCccEEEEEEcCCCC--EEEEEeCCC-----------------CEEEEECCCCeEEeEec
Q 011457          281 SVCRVWDIRTKMQIFALA-GHDNTVCSVFTRPTDP--QVVTGSHDS-----------------TIKFWDLRYGKTMLTLT  340 (485)
Q Consensus       281 g~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~--~l~s~s~dg-----------------~I~iwd~~~~~~~~~~~  340 (485)
                      ++|.++|+++++....+. .+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999998877665 3567899999999988  454444432                 23558888877777665


Q ss_pred             cCCCceEEEEECCCCCEEEEEcCCC------------------------------------------EEEEECCCCceee
Q 011457          341 HHKKSVRAMALHPTEDCFASASAEN------------------------------------------IKKFNLPKGEFLH  378 (485)
Q Consensus       341 ~~~~~v~~l~~~p~~~~l~~~~~~~------------------------------------------i~i~d~~~~~~~~  378 (485)
                      .. .....+.++|+|+++++.+.+.                                          +.+++....+.+.
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            43 3578899999999888775431                                          2222222223333


Q ss_pred             eeccCCcccEEEEEeCCCC-e-EEEEeCCCcEEEEeCCCCccccc-----ceeeeccCCCCCCccEEEEEEccCCCEEEE
Q 011457          379 NMLSQQKTIINSMAVNEEG-V-LATGGDNGSLWFWDWKSGHNFQQ-----AQTIVQPGSLDSEAGIYALSYDVTGSRLVT  451 (485)
Q Consensus       379 ~~~~~~~~~i~~~~~~~~~-~-l~sg~~dg~I~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s  451 (485)
                      .+..  ......+.++||| + ++++..+++|.+||+.+......     .....  ...+..-.....+|+++|..+.+
T Consensus       253 ~IPv--gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~--~~~~~glgplh~~fd~~g~~yts  328 (441)
T d1qnia2         253 YIPV--PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV--AEPELGLGPLHTTFDGRGNAYTT  328 (441)
T ss_dssp             EECC--BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE--ECCBCCSCEEEEEECSSSEEEEE
T ss_pred             EEeC--CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE--eecccccCcccceecCCceEEEc
Confidence            3222  1224568999999 4 56678899999999865322100     00000  01112234556789999988888


Q ss_pred             EECCCcEEEecCC
Q 011457          452 CEADKTIKMWRED  464 (485)
Q Consensus       452 ~~~Dg~I~iW~~~  464 (485)
                      ...|..|..|+++
T Consensus       329 ~~~ds~v~kw~~~  341 (441)
T d1qnia2         329 LFIDSQVCKWNIA  341 (441)
T ss_dssp             ETTTTEEEEEEHH
T ss_pred             ccccceEEEeccc
Confidence            8999999999974

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=3.4e-09  Score=95.84  Aligned_cols=236  Identities=11%  Similarity=0.026  Sum_probs=151.3

Q ss_pred             cCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457          218 EQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA  296 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  296 (485)
                      ..-..+++.++|+..++. +..+.|..++............-......+++.++++++++....+.+++++-.+...+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            345899999999866654 4557777776654433322222234457889999999887777777777776655554433


Q ss_pred             eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCc
Q 011457          297 LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGE  375 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~  375 (485)
                      .. .......+++.++++++++-..+..+..++...................+++.+++.++++...+. |..++.....
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            33 235678999999998888776777788887655433222222234567899999999877766665 8888866543


Q ss_pred             eeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          376 FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       376 ~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      .. .+....-.....+++.+++ ++++...++.|..++....... ...       ...-.....++++++|.++++-..
T Consensus       173 ~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~-------~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         173 QV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP-------FTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             EE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC-------CCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             ee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc-------cCCCCCeEEEEEeCCCCEEEEECC
Confidence            32 3333344556889999988 5555556778888876543211 111       012234689999999998887667


Q ss_pred             CCcEEEecC
Q 011457          455 DKTIKMWRE  463 (485)
Q Consensus       455 Dg~I~iW~~  463 (485)
                      +++|+.++.
T Consensus       244 ~~rI~~i~~  252 (260)
T d1rwia_         244 NDRVVKLTS  252 (260)
T ss_dssp             GTEEEEECC
T ss_pred             CCEEEEEeC
Confidence            776665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=1.5e-08  Score=93.68  Aligned_cols=239  Identities=10%  Similarity=-0.008  Sum_probs=158.1

Q ss_pred             CCCcceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcE
Q 011457          162 HAPWKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQV  241 (485)
Q Consensus       162 ~~~~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V  241 (485)
                      ..|.+.+..+.. ..++..++++|||+++++...++.|..|+.. ++. ..+......+.+++|+++|+++++...++.+
T Consensus        15 ~~~~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~   91 (302)
T d2p4oa1          15 LAPAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSI   91 (302)
T ss_dssp             CCCEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcccEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceE
Confidence            345555555543 2368899999999999999999999999854 433 3344466789999999999998888888888


Q ss_pred             EEEECCCC--eeEEEe-cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc----------CCccEEEEE
Q 011457          242 KCWDLEQN--KVIRSY-HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG----------HDNTVCSVF  308 (485)
Q Consensus       242 ~iwd~~~~--~~~~~~-~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~l~  308 (485)
                      ..|+....  ...... .........+++.++++++++-+.++.+..+|...+........          .......+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~  171 (302)
T d2p4oa1          92 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK  171 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred             EEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence            88876543  222111 22445688999999999988888899999999887654332221          112345666


Q ss_pred             EcCCCCEEEEEeCCCCEEEEECCCCeEEeE--eccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeee-ccCC
Q 011457          309 TRPTDPQVVTGSHDSTIKFWDLRYGKTMLT--LTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNM-LSQQ  384 (485)
Q Consensus       309 ~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~-~~~~  384 (485)
                      +.. +..+++.+..+.|..++.........  ..........+++.++|.++++...++ |..++.. ++..... ....
T Consensus       172 ~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~  249 (302)
T d2p4oa1         172 RFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG  249 (302)
T ss_dssp             EET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred             ccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCC
Confidence            653 34556667788899888765432221  111233456799999999877776555 8888654 4332221 2223


Q ss_pred             cccEEEEEe---CCCC-eEEEEeCC
Q 011457          385 KTIINSMAV---NEEG-VLATGGDN  405 (485)
Q Consensus       385 ~~~i~~~~~---~~~~-~l~sg~~d  405 (485)
                      -...++++|   ++|+ .|++++..
T Consensus       250 ~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         250 VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCceEEEEcCCCCCCCEEEEECCC
Confidence            345788899   5565 55555443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.14  E-value=1.5e-07  Score=85.53  Aligned_cols=237  Identities=14%  Similarity=0.226  Sum_probs=162.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc------cCCceEEEEEecCCC-EEEEE-ECCCcEEEEECCC
Q 011457          219 QVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG------HLSGVYCLGLHPTID-ILLTG-GRDSVCRVWDIRT  290 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~-~l~sg-~~dg~i~iwd~~~  290 (485)
                      ....|+++++++.+++-..++.|++||.+ ++.+..+..      .......+++..+.. .+++. +.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            46899999999977777778899999965 777776632      122345666666544 34333 34557777775 4


Q ss_pred             CceEEEec-cCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEe--ccCCCceEEEEECCCCCEEEEEcCCC-E
Q 011457          291 KMQIFALA-GHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTL--THHKKSVRAMALHPTEDCFASASAEN-I  366 (485)
Q Consensus       291 ~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~~p~~~~l~~~~~~~-i  366 (485)
                      +.....+. ........+++.+++.++++....+.+.+++.. ++.+..+  ..+......+++.+++..+++....+ |
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence            55555553 344567889999999988888888889898864 5555554  33445778899999998887777665 8


Q ss_pred             EEEECCCCceeeeecc-CCcccEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEc
Q 011457          367 KKFNLPKGEFLHNMLS-QQKTIINSMAVNEEG-VLATGG-DNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYD  443 (485)
Q Consensus       367 ~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  443 (485)
                      .+|+. +++.+..+-. +.......+++.++| ++++-. .++.|.+|+ .+|+.+..+...      ........++++
T Consensus       181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~------~~~~~p~~vav~  252 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESK------VKHAQCFDVALM  252 (279)
T ss_dssp             EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEES------SCCSCEEEEEEE
T ss_pred             eeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCC------CCCCCEeEEEEe
Confidence            99985 5666666522 234557889999999 444433 345799998 456654443321      122357889999


Q ss_pred             cCCCEEEEEECCCcEEEecCCCCC
Q 011457          444 VTGSRLVTCEADKTIKMWREDETA  467 (485)
Q Consensus       444 ~~g~~L~s~~~Dg~I~iW~~~~~~  467 (485)
                      ++|.+ ++++.++.|++|+....+
T Consensus       253 ~dG~l-~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         253 DDGSV-VLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             TTTEE-EEEETTTEEEEEECSCCC
T ss_pred             CCCcE-EEEeCCCeEEEEEeeeec
Confidence            99965 455689999999987653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=1.4e-08  Score=93.86  Aligned_cols=237  Identities=11%  Similarity=0.039  Sum_probs=153.5

Q ss_pred             ceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 011457          208 TLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWD  287 (485)
Q Consensus       208 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd  287 (485)
                      +.+..+.. ...+..+++.|+|+++++...+++|..|+... +. ..+......+.+++|.++|+++++...++.+..|+
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence            34444432 23578999999999999999999999998653 32 33444667899999999999999998889888888


Q ss_pred             CCCCce-EEEe--ccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc----------CCCceEEEEECCC
Q 011457          288 IRTKMQ-IFAL--AGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH----------HKKSVRAMALHPT  354 (485)
Q Consensus       288 ~~~~~~-~~~~--~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~----------~~~~v~~l~~~p~  354 (485)
                      ...... ...+  .........+.+.++++++++.+.++.+..+|...+........          .......+.+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~  175 (302)
T d2p4oa1          96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN  175 (302)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred             ecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC
Confidence            754322 2222  12445688999999999888888899999999887654332211          1123456666543


Q ss_pred             CCEEEEEcCCC-EEEEECCCCceeeee-ccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCC
Q 011457          355 EDCFASASAEN-IKKFNLPKGEFLHNM-LSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSL  431 (485)
Q Consensus       355 ~~~l~~~~~~~-i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  431 (485)
                      . ++++.+..+ |..++.......... ..........+++.++| ++++...++.|..++.... .......      .
T Consensus       176 ~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~------~  247 (302)
T d2p4oa1         176 F-LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQA------E  247 (302)
T ss_dssp             E-EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECG------G
T ss_pred             c-eeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEec------C
Confidence            2 333333333 888887654332211 11122335578999999 5666667889999976532 2111110      0


Q ss_pred             CCCccEEEEEE---ccCCCEEEEEECC
Q 011457          432 DSEAGIYALSY---DVTGSRLVTCEAD  455 (485)
Q Consensus       432 ~~~~~V~~l~~---s~~g~~L~s~~~D  455 (485)
                      ..-...++++|   ++|++.|+.++..
T Consensus       248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         248 QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            12345889999   6788888776554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.13  E-value=2.2e-08  Score=95.10  Aligned_cols=275  Identities=9%  Similarity=0.047  Sum_probs=159.1

Q ss_pred             EEEEeC--CCeEEEEE--CCCCceE--EEE-cccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEe-cccCC
Q 011457          190 FCTGSA--DRTIKIWD--VAKGTLK--LTL-TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSY-HGHLS  260 (485)
Q Consensus       190 l~tgs~--dg~I~iwd--~~~~~~~--~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~-~~h~~  260 (485)
                      |++|+.  .+.|.++.  .+++++.  ... ......+.-|+|++++++|+++.. +.+..|.+... ...... .....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            556643  45665544  4444432  111 223445677999999999988865 56888877543 222211 11223


Q ss_pred             ceEEEEEecCCCEEEEEE---CCCcEEEEECCCC-------------ce---EEE-eccCCccEEEEEEcCCCCEEEEEe
Q 011457          261 GVYCLGLHPTIDILLTGG---RDSVCRVWDIRTK-------------MQ---IFA-LAGHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       261 ~v~~l~~~~~~~~l~sg~---~dg~i~iwd~~~~-------------~~---~~~-~~~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      ....+.++++++.++...   ..+.|..+.+...             ..   ... .......+.++.|+|+++++++++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            455677788887443322   2355555543221             10   000 111223478999999999988876


Q ss_pred             C-CCCEEEEECCCC-eEE--eEe--ccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeec-----------
Q 011457          321 H-DSTIKFWDLRYG-KTM--LTL--THHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNML-----------  381 (485)
Q Consensus       321 ~-dg~I~iwd~~~~-~~~--~~~--~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~-----------  381 (485)
                      . ...|.+|+.... ...  ...  .......+.+.|+|+++++.+.....  |.+|+...+.......           
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  243 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence            5 346888876542 221  111  22346789999999999887766543  8899887654321110           


Q ss_pred             -------cCCcccEEEEEeCCCC-eEEEEeC-C-----CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEcc-CC
Q 011457          382 -------SQQKTIINSMAVNEEG-VLATGGD-N-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDV-TG  446 (485)
Q Consensus       382 -------~~~~~~i~~~~~~~~~-~l~sg~~-d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g  446 (485)
                             .........+.++|+| +|+++.. +     +.|..|++.....+.........  ........+++++| +|
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT--PTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC--SSCCTTCCCEEECTTCT
T ss_pred             cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE--EcCCCCccEEEecCCCC
Confidence                   0112235678999999 6655532 2     34777777654333322221111  11223356688998 89


Q ss_pred             CEEEEEE-CCCcEEEecCCCCC
Q 011457          447 SRLVTCE-ADKTIKMWREDETA  467 (485)
Q Consensus       447 ~~L~s~~-~Dg~I~iW~~~~~~  467 (485)
                      ++|+++. .++.|.+|+++...
T Consensus       322 ~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         322 EWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETTE
T ss_pred             CEEEEEeCCCCeEEEEEEeCCc
Confidence            9887764 67999999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.13  E-value=6.9e-08  Score=89.52  Aligned_cols=240  Identities=9%  Similarity=0.041  Sum_probs=152.4

Q ss_pred             cCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeeEEEecc----cCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457          218 EQVRGLAVSSKHTYMFSAGD-------DKQVKCWDLEQNKVIRSYHG----HLSGVYCLGLHPTIDILLTGGRDSVCRVW  286 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~-------dg~V~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~sg~~dg~i~iw  286 (485)
                      .....++|.++|++.++...       +|.|..||..++........    .......++|.++++.++++...+.|..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            44567899999997776432       46799999988765443321    12335789999999988888887889999


Q ss_pred             ECCCCceEEEeccCC----ccEEEEEEcCCCCEEEEEeC---------------CCCEEEEECCCCeEEeEeccCCCceE
Q 011457          287 DIRTKMQIFALAGHD----NTVCSVFTRPTDPQVVTGSH---------------DSTIKFWDLRYGKTMLTLTHHKKSVR  347 (485)
Q Consensus       287 d~~~~~~~~~~~~~~----~~v~~l~~~~~~~~l~s~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~v~  347 (485)
                      |..............    .....+.+.++|.+.++-..               +|.|..++.. ++..... .....-+
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pN  175 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPN  175 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceee
Confidence            987654322211111    13577899999987776432               2344444432 3332222 2223346


Q ss_pred             EEEECCCCC----EEEEE-cCCC-EEEEECCCCceee------eeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          348 AMALHPTED----CFASA-SAEN-IKKFNLPKGEFLH------NMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       348 ~l~~~p~~~----~l~~~-~~~~-i~i~d~~~~~~~~------~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      .++|+|++.    .|..+ +..+ |..|++.....+.      .+..........+++..+| ++++....+.|.+||.+
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            789988764    34443 4444 8888875433222      1112223346789999999 55666678899999988


Q ss_pred             CCcccccceeeeccCCCCCCccEEEEEEccCCCE-EEEEECCCcEEEecCCCCC
Q 011457          415 SGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR-LVTCEADKTIKMWREDETA  467 (485)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~-L~s~~~Dg~I~iW~~~~~~  467 (485)
                      .+.....+..        .....++++|.++++. +++.+.+|.|...++....
T Consensus       256 ~g~~~~~i~~--------p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         256 GGQPKMRIRC--------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             CBSCSEEEEC--------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             CCEEEEEEEC--------CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            7765444332        2345889999999975 4566677888888876544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=9.6e-08  Score=88.52  Aligned_cols=242  Identities=10%  Similarity=0.116  Sum_probs=156.5

Q ss_pred             EecCCcceEEEEEccCCCEEEEEeC-------CCeEEEEECCCCceEEEEccc----ccCEEEEEEcCCCCEEEEEeCCC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSA-------DRTIKIWDVAKGTLKLTLTGH----IEQVRGLAVSSKHTYMFSAGDDK  239 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~-------dg~I~iwd~~~~~~~~~~~~h----~~~V~~l~~s~~~~~l~s~~~dg  239 (485)
                      +...-...-.++|+++|+++++...       +|.|..||..++.........    ...-..++|.++++.|+++...+
T Consensus        13 v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~   92 (314)
T d1pjxa_          13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL   92 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred             eecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCC
Confidence            3334445677899999997776432       467999998887655443322    23356899999999888888777


Q ss_pred             cEEEEECCCCeeEEEecccC----CceEEEEEecCCCEEEEEEC---------------CCcEEEEECCCCceEEEeccC
Q 011457          240 QVKCWDLEQNKVIRSYHGHL----SGVYCLGLHPTIDILLTGGR---------------DSVCRVWDIRTKMQIFALAGH  300 (485)
Q Consensus       240 ~V~iwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~~  300 (485)
                      .|..++.+............    .....+++.++|++.++-..               +|.|..++.. ++... +...
T Consensus        93 ~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~~  170 (314)
T d1pjxa_          93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTA  170 (314)
T ss_dssp             EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEE
T ss_pred             eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeCC
Confidence            89999987554322111111    13577999999987776422               2344444432 33222 2222


Q ss_pred             CccEEEEEEcCCCC-----EEEEEeCCCCEEEEECCCCeEEe------Eecc-CCCceEEEEECCCCCEEEEEcCCC-EE
Q 011457          301 DNTVCSVFTRPTDP-----QVVTGSHDSTIKFWDLRYGKTML------TLTH-HKKSVRAMALHPTEDCFASASAEN-IK  367 (485)
Q Consensus       301 ~~~v~~l~~~~~~~-----~l~s~s~dg~I~iwd~~~~~~~~------~~~~-~~~~v~~l~~~p~~~~l~~~~~~~-i~  367 (485)
                      -..-+.++|++++.     ++++-+..+.|..||+.....+.      .+.. .......+++..+|+++++....+ |.
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            33456788988764     44555677889999876432222      1221 122356899999999877765555 99


Q ss_pred             EEECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCC
Q 011457          368 KFNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKS  415 (485)
Q Consensus       368 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~  415 (485)
                      +|+...+.....+. ......++++|.+++  ++++.+.+|.|..+++..
T Consensus       251 ~~dp~~g~~~~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         251 VFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEeCCCCEEEEEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            99988777655543 334567889999988  556677789999988754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=6e-07  Score=80.54  Aligned_cols=232  Identities=9%  Similarity=0.043  Sum_probs=145.0

Q ss_pred             eEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEecccCCceEEEEEecCCCEE
Q 011457          198 TIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDK---QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDIL  274 (485)
Q Consensus       198 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  274 (485)
                      .|.|.|.. |.....+..+...+..-+|||||+.||......   .+.+.+...+.... +..+........|+|+|+.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-EeeeecccccceecCCCCee
Confidence            57788865 444445555678889999999999998765433   47777777665544 44477888899999999988


Q ss_pred             EEEEC-CCcEEE--EECCCCceEEEeccCCccEEEEEEcCCCCEEEE-EeCCCC--EEEEECCCCeEEeEeccCCCceEE
Q 011457          275 LTGGR-DSVCRV--WDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT-GSHDST--IKFWDLRYGKTMLTLTHHKKSVRA  348 (485)
Q Consensus       275 ~sg~~-dg~i~i--wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~--I~iwd~~~~~~~~~~~~~~~~v~~  348 (485)
                      +.... ++...+  +...... ...............+++++..++. ...+|.  |.+.++..+.. ..+.........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~  175 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD  175 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred             eEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence            77654 333333  3323222 3333334445555667777665544 444554  55556655433 333445566778


Q ss_pred             EEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEEEeCCCC-eEEEEeC---CCcEEEEeCCCCcccc
Q 011457          349 MALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEG-VLATGGD---NGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~---dg~I~iwd~~~~~~~~  420 (485)
                      ..|+|++..++..+.++    +.+.+...+.....   ..........|+||| .|+..+.   ...|+++++..+....
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL---SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC---CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccceEe---ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            89999999888776554    55566655543222   233445677899999 5543332   3468899998765432


Q ss_pred             cceeeeccCCCCCCccEEEEEEccC
Q 011457          421 QAQTIVQPGSLDSEAGIYALSYDVT  445 (485)
Q Consensus       421 ~~~~~~~~~~~~~~~~V~~l~~s~~  445 (485)
                      ..         .....+...+|+|-
T Consensus       253 lt---------~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         253 LP---------ATDGQVKFPAWSPY  268 (269)
T ss_dssp             CC---------CSSSEEEEEEECCC
T ss_pred             Ee---------CCCCcEEeEEeCCC
Confidence            21         23456778889883

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.06  E-value=5.1e-07  Score=83.69  Aligned_cols=234  Identities=9%  Similarity=0.060  Sum_probs=151.1

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC----CCcEEEEECCCCce
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR----DSVCRVWDIRTKMQ  293 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~----dg~i~iwd~~~~~~  293 (485)
                      ..+..++|.++|++.++-..++.|..|+.++++....+.........++++++|+++++...    .+.+...+......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            34567899999997777778899999999887766666556677899999999987776543    23455566665554


Q ss_pred             EEEecc--CCccEEEEEEcCCCCEEEEEeC------CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEc-CC
Q 011457          294 IFALAG--HDNTVCSVFTRPTDPQVVTGSH------DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASAS-AE  364 (485)
Q Consensus       294 ~~~~~~--~~~~v~~l~~~~~~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-~~  364 (485)
                      ......  -......+.+.++|++.++...      .+.+..++...+ .+..+...-...+.++|+|+++.|..+. ..
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecccC
Confidence            443332  1235778999999986665432      123555554433 3333322334467899999998665543 33


Q ss_pred             C-EEEEECCCC-ceeee------eccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCc
Q 011457          365 N-IKKFNLPKG-EFLHN------MLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEA  435 (485)
Q Consensus       365 ~-i~i~d~~~~-~~~~~------~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  435 (485)
                      + |..|++... .....      ...........+++..+| +.++...+|.|.+||- .|+.+..+.....  ...+..
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~--~~~~~~  275 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR--DEGHML  275 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG--GGTCSC
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc--CCCcCc
Confidence            3 999987543 21111      111222346679999999 6666677899999994 6776655433111  113344


Q ss_pred             cEEEEEEccCCCEEEEEECC
Q 011457          436 GIYALSYDVTGSRLVTCEAD  455 (485)
Q Consensus       436 ~V~~l~~s~~g~~L~s~~~D  455 (485)
                      .+++++|.+++..|++...|
T Consensus       276 ~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         276 RSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             BCCEEEECTTSCEEEEEEEC
T ss_pred             eeeeEEEeCCCCEEEEEcCC
Confidence            57899999988887776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=4.1e-07  Score=81.63  Aligned_cols=221  Identities=11%  Similarity=0.013  Sum_probs=142.1

Q ss_pred             EEEEecCCcceEEEEEccCCCEEEEEeCC---CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-CCc--E
Q 011457          168 YRVISGHLGWVRSVAFDHSNTWFCTGSAD---RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-DKQ--V  241 (485)
Q Consensus       168 ~~~l~~H~~~V~~l~~sp~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~--V  241 (485)
                      .+.+..+...+..-+|||||+.||-...+   ..+.+.+...+... .+..+........|+|++..++.... ++.  +
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccce
Confidence            34444567788899999999999876544   35777777666554 44457788899999999998876553 332  3


Q ss_pred             EEEECCCCeeEEEecccCCceEEEEEecCCCEEEE-EECCC--cEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE
Q 011457          242 KCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLT-GGRDS--VCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT  318 (485)
Q Consensus       242 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  318 (485)
                      ..+........... ..........++++++.++. ...+|  .|.+.++..+... .+...........|+|++..++.
T Consensus       110 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         110 YVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEE
T ss_pred             eecccccccceeee-eccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEE
Confidence            33333333333333 34444556667777665444 44455  4556666655433 34446677788899999998887


Q ss_pred             EeCCC-C--EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCceeeeeccCCcccEEEE
Q 011457          319 GSHDS-T--IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEFLHNMLSQQKTIINSM  391 (485)
Q Consensus       319 ~s~dg-~--I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~~~~~~~~~~~~i~~~  391 (485)
                      .+.++ .  |.+.|...+..  .+...........|+|||+.|+..+..+    ++++++..+... .+ ......+...
T Consensus       188 ~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~l-t~~~g~~~~p  263 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RL-PATDGQVKFP  263 (269)
T ss_dssp             EEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-EC-CCSSSEEEEE
T ss_pred             EeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EE-eCCCCcEEeE
Confidence            66544 4  44445554433  3434455677889999999887555332    889998766543 33 3445667778


Q ss_pred             EeCC
Q 011457          392 AVNE  395 (485)
Q Consensus       392 ~~~~  395 (485)
                      +|+|
T Consensus       264 ~WSP  267 (269)
T d2hqsa1         264 AWSP  267 (269)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            8887

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.04  E-value=3.7e-08  Score=93.52  Aligned_cols=242  Identities=14%  Similarity=0.091  Sum_probs=146.9

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc--ccccCEEEEEEcCCCCEEEE--Ee-CCCcEEEEECCC
Q 011457          174 HLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT--GHIEQVRGLAVSSKHTYMFS--AG-DDKQVKCWDLEQ  248 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s--~~-~dg~V~iwd~~~  248 (485)
                      ....+.-|+|+|++++|++... +.+..|.+..........  ........+.++++++.++.  +. ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4555677999999999988765 567788765432222221  12233456778888875433  32 245565554322


Q ss_pred             C-ee---------------EEEe-cccCCceEEEEEecCCCEEEEEEC-CCcEEEEECCCCceEE---Ee--ccCCccEE
Q 011457          249 N-KV---------------IRSY-HGHLSGVYCLGLHPTIDILLTGGR-DSVCRVWDIRTKMQIF---AL--AGHDNTVC  305 (485)
Q Consensus       249 ~-~~---------------~~~~-~~h~~~v~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~---~~--~~~~~~v~  305 (485)
                      . ..               .... ......+.++.|+|+|+++++++. ...|.+|+......+.   ..  ........
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            1 11               1110 112234789999999998888865 4578888765432222   11  12356789


Q ss_pred             EEEEcCCCCEEEEEe-CCCCEEEEECCCCeEEe--E---ec--------------cCCCceEEEEECCCCCEEEEEcC--
Q 011457          306 SVFTRPTDPQVVTGS-HDSTIKFWDLRYGKTML--T---LT--------------HHKKSVRAMALHPTEDCFASASA--  363 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~~~--~---~~--------------~~~~~v~~l~~~p~~~~l~~~~~--  363 (485)
                      .+.|+|+++++++.. .+++|.+|++..++...  .   ..              ........+.++|+|++++++..  
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            999999999886555 57889999987654221  1   11              01123567899999999887743  


Q ss_pred             CC-----EEEEECCCCceeeeec-----cCCcccEEEEEeCC-CC-eEE-EEeCCCcEEEEeCCCC
Q 011457          364 EN-----IKKFNLPKGEFLHNML-----SQQKTIINSMAVNE-EG-VLA-TGGDNGSLWFWDWKSG  416 (485)
Q Consensus       364 ~~-----i~i~d~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~-~l~-sg~~dg~I~iwd~~~~  416 (485)
                      +.     |..|++.....+....     .........++++| +| +|+ +...++.|.+|++...
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            22     7777765433222111     12234456788987 66 554 4467799999987543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.3e-08  Score=94.49  Aligned_cols=285  Identities=9%  Similarity=0.019  Sum_probs=166.8

Q ss_pred             ceEEEEEccCCCEEEEEe---------CCCeEEEEECCCCceEEEE--cccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          177 WVRSVAFDHSNTWFCTGS---------ADRTIKIWDVAKGTLKLTL--TGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs---------~dg~I~iwd~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      .+....||||+++++...         ..+.+.++|+.++......  ......+....|||+|+.||-.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            456778999999887764         3578999999988754432  22344566789999999988775 67899999


Q ss_pred             CCCCeeEEEec-ccCCc-----------------eEEEEEecCCCEEEEEECC-C-------------------------
Q 011457          246 LEQNKVIRSYH-GHLSG-----------------VYCLGLHPTIDILLTGGRD-S-------------------------  281 (485)
Q Consensus       246 ~~~~~~~~~~~-~h~~~-----------------v~~l~~~~~~~~l~sg~~d-g-------------------------  281 (485)
                      ..++..++... +....                 -..+-|+|||+.|+....| .                         
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            88776665443 11111                 2467899999999886532 2                         


Q ss_pred             --------cEEEEECCCCceEEEec------cCCccEEEEEEcCCCCEEEEEeC-C---CCEEEEECCCCeEEeEeccCC
Q 011457          282 --------VCRVWDIRTKMQIFALA------GHDNTVCSVFTRPTDPQVVTGSH-D---STIKFWDLRYGKTMLTLTHHK  343 (485)
Q Consensus       282 --------~i~iwd~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~s~s~-d---g~I~iwd~~~~~~~~~~~~~~  343 (485)
                              .+.++|+.++.......      .....+..+.|.++++.++.... +   ..|.++|..++++...+....
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~  300 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence                    24445554433222111      12234678899998876655433 2   258889999988765543221


Q ss_pred             -Cc----eEEEEECCCCCEEE--EEc----CCCEEEEECC------CCceeeeeccCCcccEEEEEeCCCC--eEEEEeC
Q 011457          344 -KS----VRAMALHPTEDCFA--SAS----AENIKKFNLP------KGEFLHNMLSQQKTIINSMAVNEEG--VLATGGD  404 (485)
Q Consensus       344 -~~----v~~l~~~p~~~~l~--~~~----~~~i~i~d~~------~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~  404 (485)
                       ..    -....|+++|..++  ..+    .+.+..+.+.      .+..+..+..+.-....-+.++.++  +.+++..
T Consensus       301 ~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~  380 (465)
T d1xfda1         301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (465)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence             11    23457889987432  222    2235555432      2333333333322223345687776  4445544


Q ss_pred             C--CcEEEE--eCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC---CcEEEecCCCCC
Q 011457          405 N--GSLWFW--DWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD---KTIKMWREDETA  467 (485)
Q Consensus       405 d--g~I~iw--d~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D---g~I~iW~~~~~~  467 (485)
                      +  +.-++|  ++..+.....+..     ..........+.|||+|++++..+..   -.+.+++..++.
T Consensus       381 ~~p~~~hly~v~l~g~~~~~~lt~-----~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~  445 (465)
T d1xfda1         381 DLPRRRQLYSANTVGNFNRQCLSC-----DLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKK  445 (465)
T ss_dssp             SCTTCCEEEEECSSTTCCCBCSST-----TSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred             CCCCceEEEEEECCCCCcceeecc-----ccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCC
Confidence            3  233344  4443322221111     11234567789999999999865443   356677665544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.02  E-value=1.2e-06  Score=81.04  Aligned_cols=230  Identities=8%  Similarity=0.013  Sum_probs=151.5

Q ss_pred             EecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC----CCcEEEEEC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD----DKQVKCWDL  246 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----dg~V~iwd~  246 (485)
                      +......+..++|+++|+++++-..++.|..|+...++....+.........++++++|+++++...    .+.|...+.
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence            3344455678999999998887778899999998887766666556677899999999987776543    234555565


Q ss_pred             CCCeeEEEecc--cCCceEEEEEecCCCEEEEEEC------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEE-
Q 011457          247 EQNKVIRSYHG--HLSGVYCLGLHPTIDILLTGGR------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVV-  317 (485)
Q Consensus       247 ~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-  317 (485)
                      ...........  -......+++.++|++.++...      .+.+..++...+ .+..+...-.....++|+++++.|+ 
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEE
Confidence            55554443321  2345778999999986665432      133555554433 3333332334567899999998765 


Q ss_pred             EEeCCCCEEEEECCCC-eEEe-------EeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccC-----
Q 011457          318 TGSHDSTIKFWDLRYG-KTML-------TLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQ-----  383 (485)
Q Consensus       318 s~s~dg~I~iwd~~~~-~~~~-------~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~-----  383 (485)
                      +-+..+.|..||+... ....       ...........+++..+|+++++...++ |.+|+ ++|+.+..+...     
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~  272 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEG  272 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGT
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCC
Confidence            4456789999998642 1111       1111123356799999999887776655 99999 578888776432     


Q ss_pred             CcccEEEEEeCCCC-eEEEE
Q 011457          384 QKTIINSMAVNEEG-VLATG  402 (485)
Q Consensus       384 ~~~~i~~~~~~~~~-~l~sg  402 (485)
                      +...+.++++.+++ .+++.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         273 HMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             CSCBCCEEEECTTSCEEEEE
T ss_pred             cCceeeeEEEeCCCCEEEEE
Confidence            23357788998877 44443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.1e-06  Score=85.80  Aligned_cols=213  Identities=9%  Similarity=0.090  Sum_probs=135.4

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCceEEEEccc---ccCEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCe
Q 011457          183 FDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGH---IEQVRGLAVSSKHTYMFSAG---------DDKQVKCWDLEQNK  250 (485)
Q Consensus       183 ~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~V~~l~~s~~~~~l~s~~---------~dg~V~iwd~~~~~  250 (485)
                      |.+++.++.. ..+|.|.+||+.+++....+...   .-.+....|+||+++++...         ..+.+.++|+.++.
T Consensus        24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            5566665543 45688999999888765545432   23567888999999988763         35788999999887


Q ss_pred             eEEEe--cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-cCCcc-----------------EEEEEEc
Q 011457          251 VIRSY--HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-GHDNT-----------------VCSVFTR  310 (485)
Q Consensus       251 ~~~~~--~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~-----------------v~~l~~~  310 (485)
                      .....  ......+....|+|||+.|+... ++.|.+.+..++..++... +....                 -..+.|+
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            54432  22334566688999999988865 6678999888776655443 22111                 2577899


Q ss_pred             CCCCEEEEEeCC-CC---------------------------------EEEEECCCCeEEeEec------cCCCceEEEE
Q 011457          311 PTDPQVVTGSHD-ST---------------------------------IKFWDLRYGKTMLTLT------HHKKSVRAMA  350 (485)
Q Consensus       311 ~~~~~l~s~s~d-g~---------------------------------I~iwd~~~~~~~~~~~------~~~~~v~~l~  350 (485)
                      |||++|+....| ..                                 +.++|+..+.......      ....-+..+.
T Consensus       182 PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~  261 (465)
T d1xfda1         182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK  261 (465)
T ss_dssp             TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred             CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeE
Confidence            999999876432 22                                 3344443332211111      0111367789


Q ss_pred             ECCCCCEEEEEcCCC-----EEEEECCCCceeeeeccCCcccE----EEEEeCCCC
Q 011457          351 LHPTEDCFASASAEN-----IKKFNLPKGEFLHNMLSQQKTII----NSMAVNEEG  397 (485)
Q Consensus       351 ~~p~~~~l~~~~~~~-----i~i~d~~~~~~~~~~~~~~~~~i----~~~~~~~~~  397 (485)
                      |+|++.+++......     +.++|..+++....+.......|    ....|+++|
T Consensus       262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg  317 (465)
T d1xfda1         262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG  317 (465)
T ss_dssp             ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS
T ss_pred             EcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCC
Confidence            999998766554321     88899999876654433333322    235678887

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.69  E-value=0.00011  Score=66.55  Aligned_cols=218  Identities=11%  Similarity=0.051  Sum_probs=141.1

Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEecc-
Q 011457          222 GLAVSSKHT-YMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAG-  299 (485)
Q Consensus       222 ~l~~s~~~~-~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-  299 (485)
                      ...|++... +.++=-..+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ .+.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            456776444 4444446788999999887653 333 4467889999999876654 555 588999998875443321 


Q ss_pred             ---CCccEEEEEEcCCCCEEEEEeC----CCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCC-C-EEEEE
Q 011457          300 ---HDNTVCSVFTRPTDPQVVTGSH----DSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAE-N-IKKFN  370 (485)
Q Consensus       300 ---~~~~v~~l~~~~~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~-~-i~i~d  370 (485)
                         ....+..+.+.++|++.++...    .+.-.+|.+..++...... .-..-..++|++++..+..+... + |..|+
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEee
Confidence               1235788999999987666443    2345667666665544443 23346789999999876655443 3 88887


Q ss_pred             CCCCc-------eeeeeccCCcccEEEEEeCCCC-eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE
Q 011457          371 LPKGE-------FLHNMLSQQKTIINSMAVNEEG-VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY  442 (485)
Q Consensus       371 ~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  442 (485)
                      +....       ...............+++..+| +.++.-..|.|..|| ..|+.+..+..        ....+++++|
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~l--------P~~~~T~~~F  247 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEV--------PGKQTTCPAF  247 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEEC--------SCSBEEEEEE
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecC--------CCCceEEEEE
Confidence            64211       1111123345667889999999 445555678899999 46777666543        1235899999


Q ss_pred             c-cCCCEEEEEE
Q 011457          443 D-VTGSRLVTCE  453 (485)
Q Consensus       443 s-~~g~~L~s~~  453 (485)
                      - ++.+.|+..+
T Consensus       248 GG~d~~~LyvTt  259 (295)
T d2ghsa1         248 IGPDASRLLVTS  259 (295)
T ss_dssp             ESTTSCEEEEEE
T ss_pred             eCCCCCEEEEEE
Confidence            5 6666665443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=0.00038  Score=62.85  Aligned_cols=219  Identities=12%  Similarity=0.071  Sum_probs=144.3

Q ss_pred             EEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457          179 RSVAFDHS-NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       179 ~~l~~sp~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      -+..|++. +.++.+=-..+.|.-||..+++.. .+. ....+.++++.+++.++++ +.+ -|.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            35568874 455555446789999999888654 232 3467889999999877665 454 588999998875443321


Q ss_pred             ----cCCceEEEEEecCCCEEEEEEC----CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEE-EeCCCCEEEE
Q 011457          258 ----HLSGVYCLGLHPTIDILLTGGR----DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVT-GSHDSTIKFW  328 (485)
Q Consensus       258 ----h~~~v~~l~~~~~~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~s~dg~I~iw  328 (485)
                          ....++.+.+.|+|++.++...    .+.-.+|.+..++...... .-..-..+.|+++++.++. -+..+.|..|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEe
Confidence                1235788999999987665432    2345667776665444433 2345678999999986654 4557789888


Q ss_pred             ECCCC------e--EEeEeccCCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccEEEEEeC-CCC-
Q 011457          329 DLRYG------K--TMLTLTHHKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTIINSMAVN-EEG-  397 (485)
Q Consensus       329 d~~~~------~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~-  397 (485)
                      ++...      +  ....+.........+++..+|.+.++.-.++ |..|| ++|+.+..+... ...+++++|- ++. 
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP-~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVP-GKQTTCPAFIGPDAS  253 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECS-CSBEEEEEEESTTSC
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCC-CCceEEEEEeCCCCC
Confidence            87421      1  1122333455678899999999887775555 99999 678888776443 3457888885 444 


Q ss_pred             -eEEEEeC
Q 011457          398 -VLATGGD  404 (485)
Q Consensus       398 -~l~sg~~  404 (485)
                       ++++...
T Consensus       254 ~LyvTta~  261 (295)
T d2ghsa1         254 RLLVTSAR  261 (295)
T ss_dssp             EEEEEEBC
T ss_pred             EEEEEECC
Confidence             4454443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.47  E-value=8.3e-06  Score=73.02  Aligned_cols=228  Identities=7%  Similarity=0.032  Sum_probs=127.5

Q ss_pred             EEccC--CCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeC-C-----CcEEEEECCCCeeEE
Q 011457          182 AFDHS--NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGD-D-----KQVKCWDLEQNKVIR  253 (485)
Q Consensus       182 ~~sp~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d-----g~V~iwd~~~~~~~~  253 (485)
                      ..+|+  |+.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.|+.... +     ..|.+++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99887664 467999999888765 46667778899999999999886532 2     247788888776654


Q ss_pred             Eec------ccCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 011457          254 SYH------GHLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       254 ~~~------~h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                      ...      ..........|+|+|+.|+.....      ..+...+...+.....   +........+.+.+..++....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  159 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTF  159 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCS
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeecc
Confidence            322      122345678899999988875432      2345555554433222   1222223333333333332222


Q ss_pred             CC-----------CEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeeeeccCCcccE
Q 011457          322 DS-----------TIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       322 dg-----------~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      +.           .............. ............+.++..++.....+.  |.++|+..++... +.......+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~  237 (281)
T d1k32a2         160 ELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYP  237 (281)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCE
T ss_pred             ccceeeeeccCCcceeeeeccccceee-ccCCccccceeeeeccccceecccccccceEEEeCCCCceEE-eecCCCccc
Confidence            11           11122222222222 222233344455555533333322222  8888887665433 322223233


Q ss_pred             EEEEeCCCC-eEEEEeCCCcEEEEeCCCCccc
Q 011457          389 NSMAVNEEG-VLATGGDNGSLWFWDWKSGHNF  419 (485)
Q Consensus       389 ~~~~~~~~~-~l~sg~~dg~I~iwd~~~~~~~  419 (485)
                        ..++++| .|+. ..+|.|+++|+.+++..
T Consensus       238 --~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         238 --RHLNTDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             --EEEEESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             --ccCcCCCCEEEE-EeCCEEEEEECCCCCEE
Confidence              3578888 5443 45689999999887643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=0.00063  Score=60.17  Aligned_cols=221  Identities=7%  Similarity=0.022  Sum_probs=140.8

Q ss_pred             EecCCcceEEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEE-EEeCCCcEEEEECCC
Q 011457          171 ISGHLGWVRSVAFDHSNTWFCTG-SADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMF-SAGDDKQVKCWDLEQ  248 (485)
Q Consensus       171 l~~H~~~V~~l~~sp~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~V~iwd~~~  248 (485)
                      +..+...+.+|+|++.++.+.-. ..++.|+..++........+......+..+++..-+..|+ +-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            34455668899999877766554 4568899999876665555554456789999987666565 445678999999886


Q ss_pred             CeeEEEecccCCceEEEEEecCCCEEEEEECC---CcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCC
Q 011457          249 NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD---SVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDST  324 (485)
Q Consensus       249 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~  324 (485)
                      ......+......+..++++|...+++.....   +.|.--++............-.....+++.+.++.|+.+ ...+.
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE
Confidence            65433334344678999999987777655433   235445665443333333333566899999887777655 45678


Q ss_pred             EEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC-CCEEEEECCCCceeeeeccCCcccEEEEEe
Q 011457          325 IKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA-ENIKKFNLPKGEFLHNMLSQQKTIINSMAV  393 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~  393 (485)
                      |...|+........+.+.. ...+|++. ++.++.+-.. +.|...|..+++....+..........+.+
T Consensus       191 I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v  258 (263)
T d1npea_         191 AECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI  258 (263)
T ss_dssp             EEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEE
T ss_pred             EEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEE
Confidence            9999987554433444333 34577776 3333344333 339999998888777665444443334433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.25  E-value=4e-05  Score=68.32  Aligned_cols=229  Identities=8%  Similarity=-0.017  Sum_probs=128.2

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEEC-CC-----cEEEEECCCCceEE
Q 011457          224 AVSSK--HTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR-DS-----VCRVWDIRTKMQIF  295 (485)
Q Consensus       224 ~~s~~--~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~-dg-----~i~iwd~~~~~~~~  295 (485)
                      ..+|+  |+.++..+ +|.|.+.|+.+++.. .+..+.+.+...+|+|||+.|+.... ++     .|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  88877664 467888899987764 45557778899999999998886543 22     47777877775543


Q ss_pred             Eec------cCCccEEEEEEcCCCCEEEEEeCC------CCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcC
Q 011457          296 ALA------GHDNTVCSVFTRPTDPQVVTGSHD------STIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASA  363 (485)
Q Consensus       296 ~~~------~~~~~v~~l~~~~~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~  363 (485)
                      ...      ..........|+|+++.|+.....      ..+...+...+......   ........+.+.+..++....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  159 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNTF  159 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESCS
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeecc
Confidence            221      112345678899999988875432      22455555544433221   122223333333333333222


Q ss_pred             CC------------EEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCC--CcEEEEeCCCCcccccceeeeccC
Q 011457          364 EN------------IKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDN--GSLWFWDWKSGHNFQQAQTIVQPG  429 (485)
Q Consensus       364 ~~------------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~~~~  429 (485)
                      ..            ..............  ...........+.++..+.....+  ..|+++|+.+++......      
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~------  231 (281)
T d1k32a2         160 ELPHWKGYRGGTRGKIWIEVNSGAFKKI--VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS------  231 (281)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEE--ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC------
T ss_pred             ccceeeeeccCCcceeeeeccccceeec--cCCccccceeeeeccccceecccccccceEEEeCCCCceEEeec------
Confidence            11            12222222221111  112222334445555544444443  357777887665432211      


Q ss_pred             CCCCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCC
Q 011457          430 SLDSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPE  470 (485)
Q Consensus       430 ~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~  470 (485)
                        .....+  ..|+|||+.|+. ..++.|++++++++....
T Consensus       232 --~~~~~~--~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         232 --FTDYYP--RHLNTDGRRILF-SKGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             --CCSSCE--EEEEESSSCEEE-EETTEEEEECTTTCCEEE
T ss_pred             --CCCccc--ccCcCCCCEEEE-EeCCEEEEEECCCCCEEE
Confidence              111223  458999999876 457889999998877543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.19  E-value=6.6e-05  Score=69.85  Aligned_cols=223  Identities=9%  Similarity=0.076  Sum_probs=142.6

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEccc---------------------------------------ccCE--EEEEEcC-
Q 011457          190 FCTGSADRTIKIWDVAKGTLKLTLTGH---------------------------------------IEQV--RGLAVSS-  227 (485)
Q Consensus       190 l~tgs~dg~I~iwd~~~~~~~~~~~~h---------------------------------------~~~V--~~l~~s~-  227 (485)
                      |.+|+..|.|+|+-+.+++.+..+.-.                                       .+..  ..+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            678888999999999888877665100                                       0011  1344433 


Q ss_pred             --CCCEEEEEe-CCCcEEEEECCCCeeEEEecc-cCCceEEEEEecC--CCEEEEEECCC------------------cE
Q 011457          228 --KHTYMFSAG-DDKQVKCWDLEQNKVIRSYHG-HLSGVYCLGLHPT--IDILLTGGRDS------------------VC  283 (485)
Q Consensus       228 --~~~~l~s~~-~dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~--~~~l~sg~~dg------------------~i  283 (485)
                        ||+||++.. .++.|.+.|+.+.++.+.... ....+..+...++  ..+++.++.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              788888776 678999999999998765532 3455666666554  44777777632                  36


Q ss_pred             EEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCC---------------CEEEEEC------------------
Q 011457          284 RVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDS---------------TIKFWDL------------------  330 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg---------------~I~iwd~------------------  330 (485)
                      .++|..+.+....+.. ......+.++++|+++++.+.+.               .+.+++.                  
T Consensus       176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            7889998888777653 34567789999999999877542               1333332                  


Q ss_pred             -----CCC---eEEeEeccCCCceEEEEECCCCCEEEEEcCCC--EEEEECCCCceeee--------e--ccCCcccEEE
Q 011457          331 -----RYG---KTMLTLTHHKKSVRAMALHPTEDCFASASAEN--IKKFNLPKGEFLHN--------M--LSQQKTIINS  390 (485)
Q Consensus       331 -----~~~---~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~--i~i~d~~~~~~~~~--------~--~~~~~~~i~~  390 (485)
                           +..   ..+..+. -......+.++|||+++++++.-.  +.++|+.+-.....        +  .....-.-..
T Consensus       255 ~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             eeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence                 210   0111111 122345789999999999887654  99999864221100        0  0111223445


Q ss_pred             EEeCCCC-eEEEEeCCCcEEEEeCC
Q 011457          391 MAVNEEG-VLATGGDNGSLWFWDWK  414 (485)
Q Consensus       391 ~~~~~~~-~l~sg~~dg~I~iwd~~  414 (485)
                      .+|...| ...+---|..|.-|++.
T Consensus       334 t~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cccCCCceEEEEeeccceEEEEecc
Confidence            6778888 44555679999999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.04  E-value=0.00085  Score=66.35  Aligned_cols=274  Identities=11%  Similarity=0.081  Sum_probs=161.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccC-EEEEEEcC--CCCEEEEEe------CCCcEEEEECCCCeeEEEecc
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQ-VRGLAVSS--KHTYMFSAG------DDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~--~~~~l~s~~------~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      +..++.+..|+.|.-.|..+++++......... -..+.-.|  .+..++.+.      ..|.|..+|.++|+.+..+..
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            446788888999999999999988776532110 00010011  122334432      236799999999999988742


Q ss_pred             c------------------------------CCce-EEEEEecCCCEEEEEEC-------------------CCcEEEEE
Q 011457          258 H------------------------------LSGV-YCLGLHPTIDILLTGGR-------------------DSVCRVWD  287 (485)
Q Consensus       258 h------------------------------~~~v-~~l~~~~~~~~l~sg~~-------------------dg~i~iwd  287 (485)
                      -                              ...+ ..+++.+..++++.+..                   ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            1                              0111 22566676666655432                   24577889


Q ss_pred             CCCCceEEEeccCCccE---------EEEEEcCCC---CEEEEEeCCCCEEEEECCCCeEEeEeccCCC-----------
Q 011457          288 IRTKMQIFALAGHDNTV---------CSVFTRPTD---PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK-----------  344 (485)
Q Consensus       288 ~~~~~~~~~~~~~~~~v---------~~l~~~~~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-----------  344 (485)
                      +++++....++.....+         .-+.+..++   ..++.+..+|.+.++|..+++.+........           
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            99999887765422211         111122233   3567788999999999999988754321100           


Q ss_pred             -------------------------ceEEEEECCCCCEEEEEcCC-----------------------------------
Q 011457          345 -------------------------SVRAMALHPTEDCFASASAE-----------------------------------  364 (485)
Q Consensus       345 -------------------------~v~~l~~~p~~~~l~~~~~~-----------------------------------  364 (485)
                                               .-...+++|+..+++....+                                   
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                                     01134566666555543211                                   


Q ss_pred             --CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEE
Q 011457          365 --NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSY  442 (485)
Q Consensus       365 --~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  442 (485)
                        .+.-||+.+++.+.+........--.+ ....+++++|+.||.++-+|.++|+.+.+......    ....+   +.|
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l-~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~----~~~~P---~ty  508 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGTL-STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG----IVAAP---MTF  508 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC----CCSCC---EEE
T ss_pred             ccceEEEeCCCCeEeeeccCCCCCCCcee-EECCCEEEEECCCCcEEEEECCCCcEeEEEECCCC----ccccC---EEE
Confidence              266788888888877543322111112 23455888999999999999999999887664211    11122   455


Q ss_pred             ccCCC-EEEEEECC--------------------CcEEEecCCCCCC
Q 011457          443 DVTGS-RLVTCEAD--------------------KTIKMWREDETAT  468 (485)
Q Consensus       443 s~~g~-~L~s~~~D--------------------g~I~iW~~~~~~~  468 (485)
                      ..+|+ ||+.....                    +.|.+|.++..+.
T Consensus       509 ~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~  555 (560)
T d1kv9a2         509 ELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQ  555 (560)
T ss_dssp             EETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCC
T ss_pred             EECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCC
Confidence            56775 44433322                    3688888876554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.01  E-value=0.001  Score=65.93  Aligned_cols=236  Identities=10%  Similarity=0.087  Sum_probs=143.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccc----cCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeeEEEec
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHI----EQVRGLAVSSKHTYMFSAG------DDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~----~~V~~l~~s~~~~~l~s~~------~dg~V~iwd~~~~~~~~~~~  256 (485)
                      +..++.++.|+.+.-.|.++|+.........    ..++.--.-.++ .++.+.      .+|.|+.+|+.+|+.+..+.
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            3457778889999999999999877653211    111111111133 344444      36889999999999998764


Q ss_pred             ccC-------------------------------------Cce-EEEEEecCCCEEEEEEC----------------CCc
Q 011457          257 GHL-------------------------------------SGV-YCLGLHPTIDILLTGGR----------------DSV  282 (485)
Q Consensus       257 ~h~-------------------------------------~~v-~~l~~~~~~~~l~sg~~----------------dg~  282 (485)
                      ...                                     ..+ ...++.+....++.+..                ...
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence            211                                     111 23466677666666554                246


Q ss_pred             EEEEECCCCceEEEeccCCccE---------EEEEEcCCCC---EEEEEeCCCCEEEEECCCCeEEeEeccCC-------
Q 011457          283 CRVWDIRTKMQIFALAGHDNTV---------CSVFTRPTDP---QVVTGSHDSTIKFWDLRYGKTMLTLTHHK-------  343 (485)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~v---------~~l~~~~~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-------  343 (485)
                      +...|+++++.+..++.....+         ....+..++.   .++.++.+|.+.++|..+++.+.......       
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~  353 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence            7888999999988776422111         1111222333   46788899999999999998764321100       


Q ss_pred             ------Cc--------------------------eEEEEECCCCCEEEEEcCC---------------------------
Q 011457          344 ------KS--------------------------VRAMALHPTEDCFASASAE---------------------------  364 (485)
Q Consensus       344 ------~~--------------------------v~~l~~~p~~~~l~~~~~~---------------------------  364 (485)
                            .+                          -...+++|+..+++....+                           
T Consensus       354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (571)
T d2ad6a1         354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence                  00                          0124566665555443221                           


Q ss_pred             -----------CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          365 -----------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       365 -----------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                                 .+.-+|+.+|+.+.+....... ........++++++|+.||.++-+|.++|+.+.+...
T Consensus       434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~-~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA-WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC-CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccCCcccCCcccEEEeccCCCceeeEcCCCCCC-CcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence                       2666777777777665332211 1111122456888899999999999999999887754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.99  E-value=0.0023  Score=63.59  Aligned_cols=237  Identities=11%  Similarity=0.108  Sum_probs=143.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccccCE-EEEEEcC--CCCEEEEEeC------CCcEEEEECCCCeeEEEecc
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQV-RGLAVSS--KHTYMFSAGD------DKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V-~~l~~s~--~~~~l~s~~~------dg~V~iwd~~~~~~~~~~~~  257 (485)
                      ..+++.++.|+.|.-.|.++++++..+....... ..+.-.|  -+..++++..      .|.|+-+|..+|+.+.++..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            3468888899999999999999988774211000 0011011  1234555542      48999999999999987642


Q ss_pred             cC-------------------------------------C-ceEEEEEecCCCEEEEEECC----------------CcE
Q 011457          258 HL-------------------------------------S-GVYCLGLHPTIDILLTGGRD----------------SVC  283 (485)
Q Consensus       258 h~-------------------------------------~-~v~~l~~~~~~~~l~sg~~d----------------g~i  283 (485)
                      ..                                     . .-..+++.+..++++.+..+                ..|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si  280 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence            10                                     0 11234566766666665433                358


Q ss_pred             EEEECCCCceEEEecc--CC-------ccEEEEE-EcCCC---CEEEEEeCCCCEEEEECCCCeEEeEeccCC-------
Q 011457          284 RVWDIRTKMQIFALAG--HD-------NTVCSVF-TRPTD---PQVVTGSHDSTIKFWDLRYGKTMLTLTHHK-------  343 (485)
Q Consensus       284 ~iwd~~~~~~~~~~~~--~~-------~~v~~l~-~~~~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-------  343 (485)
                      ...|+++++.+..++.  |.       .....+. ...++   +.++....+|.+.++|..+++.+.......       
T Consensus       281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~  360 (596)
T d1w6sa_         281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (596)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccc
Confidence            8899999999887763  21       1111122 12344   357788899999999999998775322100       


Q ss_pred             ------Cc--------------------------eEEEEECCCCCEEEEEcC----------------------------
Q 011457          344 ------KS--------------------------VRAMALHPTEDCFASASA----------------------------  363 (485)
Q Consensus       344 ------~~--------------------------v~~l~~~p~~~~l~~~~~----------------------------  363 (485)
                            .+                          -...+++|+..++.....                            
T Consensus       361 ~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (596)
T d1w6sa_         361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (596)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccccc
Confidence                  00                          012345555444433211                            


Q ss_pred             ------------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCccccccee
Q 011457          364 ------------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQT  424 (485)
Q Consensus       364 ------------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  424 (485)
                                  +.+.-||..+++...+....... .........++++.|+.||.++.+|.++|+.+.++..
T Consensus       441 ~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~-~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAV-WGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCC-CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcccCcccCCCcceEEEEeCCCCceecccCCCCCC-ccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence                        12666777777776654322211 1111122345788899999999999999999887764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.96  E-value=0.002  Score=64.01  Aligned_cols=194  Identities=12%  Similarity=0.113  Sum_probs=117.7

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCCceEEEEccccc----------C-EEEEEEcCC----CCEEEEEeCCCcEEEEECCCC
Q 011457          186 SNTWFCTGSADRTIKIWDV-AKGTLKLTLTGHIE----------Q-VRGLAVSSK----HTYMFSAGDDKQVKCWDLEQN  249 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~-~~~~~~~~~~~h~~----------~-V~~l~~s~~----~~~l~s~~~dg~V~iwd~~~~  249 (485)
                      ++.++++++.++.|...|. ++|+.+..+.....          . -+.+++.++    ..+|+.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4555555555677888886 57988887742110          1 133455433    346888999999999999999


Q ss_pred             eeEEEecccCC-ceEEEEEec--CCCEEEEEEC------CCcEEEEECCCCceEEEeccCC-------------------
Q 011457          250 KVIRSYHGHLS-GVYCLGLHP--TIDILLTGGR------DSVCRVWDIRTKMQIFALAGHD-------------------  301 (485)
Q Consensus       250 ~~~~~~~~h~~-~v~~l~~~~--~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~-------------------  301 (485)
                      +.+..+..... .-..+.-.|  -++.+++|..      .|.|+-+|.++++.+..+....                   
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g  221 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence            99988742110 000111111  1345666643      4899999999999998764211                   


Q ss_pred             ------------------c-cEEEEEEcCCCCEEEEEeCC----------------CCEEEEECCCCeEEeEeccCCC--
Q 011457          302 ------------------N-TVCSVFTRPTDPQVVTGSHD----------------STIKFWDLRYGKTMLTLTHHKK--  344 (485)
Q Consensus       302 ------------------~-~v~~l~~~~~~~~l~s~s~d----------------g~I~iwd~~~~~~~~~~~~~~~--  344 (485)
                                        . .-..+.+.+...+++.+..+                ..|.-.|+++++.+..+.....  
T Consensus       222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~  301 (596)
T d1w6sa_         222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (596)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccc
Confidence                              0 11234566777777666443                3477889999998886653221  


Q ss_pred             -------ceEEEE-ECCCCC---EEEEEcCCC-EEEEECCCCceeee
Q 011457          345 -------SVRAMA-LHPTED---CFASASAEN-IKKFNLPKGEFLHN  379 (485)
Q Consensus       345 -------~v~~l~-~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~  379 (485)
                             ...-+. ...++.   .++....++ +.++|..+|+.+..
T Consensus       302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence                   111121 123343   455555555 88999988887753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=0.0052  Score=53.97  Aligned_cols=231  Identities=9%  Similarity=0.007  Sum_probs=143.3

Q ss_pred             EEEEEeCCCeEEEEECCCCc-----eEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEecccCCce
Q 011457          189 WFCTGSADRTIKIWDVAKGT-----LKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLEQNKVIRSYHGHLSGV  262 (485)
Q Consensus       189 ~l~tgs~dg~I~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~~~~~~~~~~~h~~~v  262 (485)
                      +|+-+.. +.|+-.+++...     ....+..+...+..|+|....+.|+.. ..++.|+..++........+......+
T Consensus         3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p   81 (263)
T d1npea_           3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence            4443332 467767765432     122333445568889999887777765 456789998987665555454444678


Q ss_pred             EEEEEecCCCEEEEE-ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCC-CC--EEEEECCCCeEEeE
Q 011457          263 YCLGLHPTIDILLTG-GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHD-ST--IKFWDLRYGKTMLT  338 (485)
Q Consensus       263 ~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~d-g~--I~iwd~~~~~~~~~  338 (485)
                      .++++..-++.|+.+ ...+.|.+.++........+.........++++|...+++..... +.  |.--++........
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            999998766666544 456799999998665544444344678899999987777755433 23  44445554333333


Q ss_pred             eccCCCceEEEEECCCCCEEEEEcCC--CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 011457          339 LTHHKKSVRAMALHPTEDCFASASAE--NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       339 ~~~~~~~v~~l~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~  416 (485)
                      ....-....+|++.+.+..|..+..+  .|...++.... ...+...... ...+++..+.+..+-..++.|...|..++
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~-~~~v~~~~~~-P~~lav~~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-RRKVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-EEEEEECCCS-EEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC-eEEEECCCCC-cEEEEEECCEEEEEECCCCEEEEEECCCC
Confidence            33333566899998887766555433  38888875443 3333333332 35677764334455556788999998887


Q ss_pred             cccccc
Q 011457          417 HNFQQA  422 (485)
Q Consensus       417 ~~~~~~  422 (485)
                      +.....
T Consensus       240 ~~~~~~  245 (263)
T d1npea_         240 KEMDTF  245 (263)
T ss_dssp             EEEEEE
T ss_pred             ccceEE
Confidence            665433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.91  E-value=0.0011  Score=65.75  Aligned_cols=190  Identities=13%  Similarity=0.092  Sum_probs=113.2

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCCceEEEEccccc----CE-------EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011457          186 SNTWFCTGSADRTIKIWDV-AKGTLKLTLTGHIE----QV-------RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR  253 (485)
Q Consensus       186 ~~~~l~tgs~dg~I~iwd~-~~~~~~~~~~~h~~----~V-------~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~  253 (485)
                      +|..+++.+.++.|...|. ++|+.+.++.....    ..       +.+++.  +..|+.++.||.+...|.++++.+.
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            4554444444688888887 47998887742110    00       123333  3457788899999999999999887


Q ss_pred             EecccC----CceEEEEEecCCCEEEEEE------CCCcEEEEECCCCceEEEeccCC----------------------
Q 011457          254 SYHGHL----SGVYCLGLHPTIDILLTGG------RDSVCRVWDIRTKMQIFALAGHD----------------------  301 (485)
Q Consensus       254 ~~~~h~----~~v~~l~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~----------------------  301 (485)
                      ......    ..++.--.-.+ +.++.+.      .+|.|+-+|+++++.+..+....                      
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~  218 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             cccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence            664211    11111111112 3455554      37889999999999998764221                      


Q ss_pred             ---------------ccE-EEEEEcCCCCEEEEEeC----------------CCCEEEEECCCCeEEeEeccCCCce---
Q 011457          302 ---------------NTV-CSVFTRPTDPQVVTGSH----------------DSTIKFWDLRYGKTMLTLTHHKKSV---  346 (485)
Q Consensus       302 ---------------~~v-~~l~~~~~~~~l~s~s~----------------dg~I~iwd~~~~~~~~~~~~~~~~v---  346 (485)
                                     ..+ ....+.+....++.+..                ...+.-.|.++|+.+..+......+   
T Consensus       219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~  298 (571)
T d2ad6a1         219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF  298 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred             ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence                           111 23456666666665554                2457788999999888776432211   


Q ss_pred             ------EEEEECCCCC---EEEEEcCCC-EEEEECCCCceee
Q 011457          347 ------RAMALHPTED---CFASASAEN-IKKFNLPKGEFLH  378 (485)
Q Consensus       347 ------~~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~  378 (485)
                            ....+..++.   .++..+.++ +.++|..+|+.+.
T Consensus       299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence                  1112222333   344455555 8889988888764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.88  E-value=0.0035  Score=58.21  Aligned_cols=271  Identities=11%  Similarity=0.056  Sum_probs=144.8

Q ss_pred             eEEEEEccCCCEEEEEeCCC-----------eEEEEECCCCceEE--EE-cccccCEEEEEEcCCCCEEEEEeCC-CcEE
Q 011457          178 VRSVAFDHSNTWFCTGSADR-----------TIKIWDVAKGTLKL--TL-TGHIEQVRGLAVSSKHTYMFSAGDD-KQVK  242 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~dg-----------~I~iwd~~~~~~~~--~~-~~h~~~V~~l~~s~~~~~l~s~~~d-g~V~  242 (485)
                      +.......+|+.++.|+.+.           .+.+||..+++-..  .. ..+.......++.+++.+++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            34444556888888887531           37899998875422  12 2233334466788999998888755 5899


Q ss_pred             EEECCCCeeEEEecc-cCCceEEEEEecCCCEEEEEECC------CcEEEEECCCCceEEEecc---------CC-----
Q 011457          243 CWDLEQNKVIRSYHG-HLSGVYCLGLHPTIDILLTGGRD------SVCRVWDIRTKMQIFALAG---------HD-----  301 (485)
Q Consensus       243 iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~---------~~-----  301 (485)
                      +||..++.....-.. ....-.+.+..+|+++++.|+.+      ..+.+||..+.+-...-..         +.     
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~  181 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  181 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence            999988765432211 11223456777899999988763      3689999887642211100         00     


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc--C----C--CceEEEEE-CCCCCEEEEEcCC--------
Q 011457          302 NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH--H----K--KSVRAMAL-HPTEDCFASASAE--------  364 (485)
Q Consensus       302 ~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~----~--~~v~~l~~-~p~~~~l~~~~~~--------  364 (485)
                      ..-..+...+++..++.+..++.+.++|..+.........  .    .  ..-.++.+ ..+++.++.++..        
T Consensus       182 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~  261 (387)
T d1k3ia3         182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  261 (387)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             cceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCccc
Confidence            0111233345677777777777778888776654322110  0    0  01122222 3356666666432        


Q ss_pred             -CEEEEECCCC---ceeeeecc--CCcccEEEEEeCCCC-eEEEEeCC-----------CcEEEEeCCCCcccccceeee
Q 011457          365 -NIKKFNLPKG---EFLHNMLS--QQKTIINSMAVNEEG-VLATGGDN-----------GSLWFWDWKSGHNFQQAQTIV  426 (485)
Q Consensus       365 -~i~i~d~~~~---~~~~~~~~--~~~~~i~~~~~~~~~-~l~sg~~d-----------g~I~iwd~~~~~~~~~~~~~~  426 (485)
                       ...+.++...   ........  .....-.+....+++ ++++|+.+           ..+.+||..+.+ ...+....
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~-W~~~~~~~  340 (387)
T d1k3ia3         262 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-FYKQNPNS  340 (387)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-EEECCCCS
T ss_pred             ceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe-EEECCCCC
Confidence             1233333221   11111111  111122244445666 77777743           147789876653 22221111


Q ss_pred             ccCCCCCCccEEEEEEccCCCEEEEEEC
Q 011457          427 QPGSLDSEAGIYALSYDVTGSRLVTCEA  454 (485)
Q Consensus       427 ~~~~~~~~~~V~~l~~s~~g~~L~s~~~  454 (485)
                      .+ ...|.    .....+||+.|+.|+.
T Consensus       341 ~~-R~~Hs----~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         341 IV-RVYHS----ISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SC-CCTTE----EEEECTTSCEEEEECC
T ss_pred             Cc-ccceE----EEEECCCCEEEEEeCC
Confidence            11 11231    2335789999999884

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=0.007  Score=53.11  Aligned_cols=248  Identities=9%  Similarity=0.122  Sum_probs=157.3

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEE
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLT  276 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  276 (485)
                      ..|.|-|+.+.....+-.   -.-.+.-.+|..+.|+.-+ ..++.++|+++.+.++.+. ....|.--.|-.+ +.|+.
T Consensus        45 ~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~-~~L~l  118 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISL-NTVAL  118 (327)
T ss_dssp             EEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSS-SEEEE
T ss_pred             ceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCC-CEEEE
Confidence            578899987665322211   1112344678888777765 5689999999999999887 4456766677655 45555


Q ss_pred             EECCCcEEEEECCCC-ceEEEeccCC----ccEEEEEEcCCCCEEEEEe-------CCCCEEEEECCCCeEEeEeccCCC
Q 011457          277 GGRDSVCRVWDIRTK-MQIFALAGHD----NTVCSVFTRPTDPQVVTGS-------HDSTIKFWDLRYGKTMLTLTHHKK  344 (485)
Q Consensus       277 g~~dg~i~iwd~~~~-~~~~~~~~~~----~~v~~l~~~~~~~~l~s~s-------~dg~I~iwd~~~~~~~~~~~~~~~  344 (485)
                      .+ +..|+-|+++.. .+...+..|.    ..|..-..+++.++++..+       -.|.+.+|..+.+ .-+.+.+|..
T Consensus       119 VT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa  196 (327)
T d1utca2         119 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  196 (327)
T ss_dssp             EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred             Ec-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceee
Confidence            54 457999999543 4555565443    4677778888999876533       2367889987744 4456666665


Q ss_pred             ceEEEEECCCC---CEEEEEcC----CCEEEEECCCCc---e-----eeeecc---CCcccEEEEEeCCCC-eEEEEeCC
Q 011457          345 SVRAMALHPTE---DCFASASA----ENIKKFNLPKGE---F-----LHNMLS---QQKTIINSMAVNEEG-VLATGGDN  405 (485)
Q Consensus       345 ~v~~l~~~p~~---~~l~~~~~----~~i~i~d~~~~~---~-----~~~~~~---~~~~~i~~~~~~~~~-~l~sg~~d  405 (485)
                      ....+.+..+.   .+|+.+..    ..+.+.++....   .     ...+..   ..++..-++.+++.. .+..-+.-
T Consensus       197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~  276 (327)
T d1utca2         197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  276 (327)
T ss_dssp             EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred             eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecC
Confidence            55555443222   24443332    237888775421   1     111111   123455667766655 88889999


Q ss_pred             CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCCcEEE
Q 011457          406 GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADKTIKM  460 (485)
Q Consensus       406 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg~I~i  460 (485)
                      |.|++||+.++.++..-+-        ....|...+-+.+..-+++...+|.|.-
T Consensus       277 G~i~lyDleTgt~i~~nRI--------s~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         277 GYIHLYDLETGTCIYMNRI--------SGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             SEEEEEETTTCCEEEEEEC--------CSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             cEEEEEEcccccEEEEeec--------CCCceEEeccCCCCceEEEECCCCeEEE
Confidence            9999999999988766543        2345665555556556777777887653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.83  E-value=0.0069  Score=59.74  Aligned_cols=272  Identities=10%  Similarity=0.072  Sum_probs=156.5

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEccc--c-cCEEEEEEcC--CCCEEEEEe------CCCcEEEEECCCCeeEEEec
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLKLTLTGH--I-EQVRGLAVSS--KHTYMFSAG------DDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~-~~V~~l~~s~--~~~~l~s~~------~dg~V~iwd~~~~~~~~~~~  256 (485)
                      ..++.++.|+.+.-.|..+|+.+......  . ..+. +.-.|  -+..+++++      ..|.|..+|.++|+.+..+.
T Consensus       129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CcEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            35667778899999999999987665431  1 1111 00011  123344443      24789999999999998763


Q ss_pred             ccC-------------------------------Cce-EEEEEecCCCEEEEEEC-------------------CCcEEE
Q 011457          257 GHL-------------------------------SGV-YCLGLHPTIDILLTGGR-------------------DSVCRV  285 (485)
Q Consensus       257 ~h~-------------------------------~~v-~~l~~~~~~~~l~sg~~-------------------dg~i~i  285 (485)
                      ...                               ..+ ...++.+....++.+..                   ...|..
T Consensus       208 t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvA  287 (573)
T d1kb0a2         208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA  287 (573)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             eccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEE
Confidence            210                               111 13456666555554332                   125777


Q ss_pred             EECCCCceEEEeccCCc---------cEEEEEEcCCC---CEEEEEeCCCCEEEEECCCCeEEeEeccCCC---------
Q 011457          286 WDIRTKMQIFALAGHDN---------TVCSVFTRPTD---PQVVTGSHDSTIKFWDLRYGKTMLTLTHHKK---------  344 (485)
Q Consensus       286 wd~~~~~~~~~~~~~~~---------~v~~l~~~~~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~---------  344 (485)
                      .|+++++.....+....         .........++   ..++.++.+|.+.++|..+++.+........         
T Consensus       288 ld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~  367 (573)
T d1kb0a2         288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKH  367 (573)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTT
T ss_pred             ecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccc
Confidence            88888888776653211         11112222223   3577888999999999999988764321110         


Q ss_pred             --------------------------ceEEEEECCCCCEEEEEcCC----------------------------------
Q 011457          345 --------------------------SVRAMALHPTEDCFASASAE----------------------------------  364 (485)
Q Consensus       345 --------------------------~v~~l~~~p~~~~l~~~~~~----------------------------------  364 (485)
                                                .-..++++|+..+++....+                                  
T Consensus       368 ~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  447 (573)
T d1kb0a2         368 GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN  447 (573)
T ss_dssp             SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred             cceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccc
Confidence                                      01123566665554442211                                  


Q ss_pred             ----------CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCC
Q 011457          365 ----------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSE  434 (485)
Q Consensus       365 ----------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  434 (485)
                                .+.-||..+++.+.+........-..++ ...+++++|+.||.++.||.++|+.+.++.....    ...
T Consensus       448 ~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~ls-tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~----~~~  522 (573)
T d1kb0a2         448 AEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT-TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG----VVA  522 (573)
T ss_dssp             SSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC----CCS
T ss_pred             cCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEE-EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC----ccc
Confidence                      1556777778777765333221111222 2345888899999999999999999887764211    112


Q ss_pred             ccEEEEEEccCCCE-EEEEEC----------------CCcEEEecCCCCCC
Q 011457          435 AGIYALSYDVTGSR-LVTCEA----------------DKTIKMWREDETAT  468 (485)
Q Consensus       435 ~~V~~l~~s~~g~~-L~s~~~----------------Dg~I~iW~~~~~~~  468 (485)
                      .+   +.|..+|+. ++....                .+.|.+|.++..+.
T Consensus       523 ~P---~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~  570 (573)
T d1kb0a2         523 AP---STYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR  570 (573)
T ss_dssp             CC---EEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred             cC---EEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence            22   445567763 333221                23688888876554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.82  E-value=0.0019  Score=63.72  Aligned_cols=276  Identities=15%  Similarity=0.128  Sum_probs=160.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEccccc----------CE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHIE----------QV-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----------~V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      +..|+.++.++.|.-.|.++|+.+.++.....          .+ ..++.  .+..++.+..|+.|...|..+++.+..+
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence            34566677889999999999999988742210          00 11111  1346888889999999999999998877


Q ss_pred             cccCC-ceEEEEEec--CCCEEEEEEC------CCcEEEEECCCCceEEEeccCC-------------------------
Q 011457          256 HGHLS-GVYCLGLHP--TIDILLTGGR------DSVCRVWDIRTKMQIFALAGHD-------------------------  301 (485)
Q Consensus       256 ~~h~~-~v~~l~~~~--~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~-------------------------  301 (485)
                      ..... .-..+.-.|  ....++.+..      .|.|.-+|.++++.+..+..-.                         
T Consensus       144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (560)
T d1kv9a2         144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (560)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence            53211 001111111  1234444432      3679999999999998875210                         


Q ss_pred             -----ccE-EEEEEcCCCCEEEEEeC-------------------CCCEEEEECCCCeEEeEeccCCCce---------E
Q 011457          302 -----NTV-CSVFTRPTDPQVVTGSH-------------------DSTIKFWDLRYGKTMLTLTHHKKSV---------R  347 (485)
Q Consensus       302 -----~~v-~~l~~~~~~~~l~s~s~-------------------dg~I~iwd~~~~~~~~~~~~~~~~v---------~  347 (485)
                           ..+ ..+.+.+...+++.+..                   ...|.-.|+++++....+......+         .
T Consensus       224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~  303 (560)
T d1kv9a2         224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (560)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence                 011 22456666666665432                   2357777999999877664322211         1


Q ss_pred             EEEECCCCC---EEEEEcCCC-EEEEECCCCceeeeeccCCcccE-----------------------------------
Q 011457          348 AMALHPTED---CFASASAEN-IKKFNLPKGEFLHNMLSQQKTII-----------------------------------  388 (485)
Q Consensus       348 ~l~~~p~~~---~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i-----------------------------------  388 (485)
                      -+.+..++.   .++.+..++ +.++|..+|+.+...........                                   
T Consensus       304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w  383 (560)
T d1kv9a2         304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW  383 (560)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred             eeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecccccccc
Confidence            112222332   445555555 89999999988755422211100                                   


Q ss_pred             EEEEeCCCC-eEEEEeC------------------------------------CCcEEEEeCCCCcccccceeeeccCCC
Q 011457          389 NSMAVNEEG-VLATGGD------------------------------------NGSLWFWDWKSGHNFQQAQTIVQPGSL  431 (485)
Q Consensus       389 ~~~~~~~~~-~l~sg~~------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~  431 (485)
                      ...+++|+. ++++-..                                    .|.|.-||+.+|+...+......    
T Consensus       384 ~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~----  459 (560)
T d1kv9a2         384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH----  459 (560)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS----
T ss_pred             ccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCC----
Confidence            123344544 3332221                                    25677788888877665443110    


Q ss_pred             CCCccEEEEEEccCCCEEEEEECCCcEEEecCCCCCCCCCCC
Q 011457          432 DSEAGIYALSYDVTGSRLVTCEADKTIKMWREDETATPETHP  473 (485)
Q Consensus       432 ~~~~~V~~l~~s~~g~~L~s~~~Dg~I~iW~~~~~~~~~~~~  473 (485)
                       ..+.    ...-.|.++++|+.||.++-+|.++++..-.+.
T Consensus       460 -~~gg----~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         460 -WNGG----TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             -CCCC----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -CCCc----eeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence             1111    123346788899999999999999988654433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.73  E-value=0.0018  Score=64.13  Aligned_cols=191  Identities=14%  Similarity=0.126  Sum_probs=112.2

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcccc----------cCE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 011457          188 TWFCTGSADRTIKIWDVAKGTLKLTLTGHI----------EQV-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYH  256 (485)
Q Consensus       188 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~----------~~V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~  256 (485)
                      ..|+.++.++.|.-+|.++|+.+..+....          ..+ ..+.+.  +..++.++.|+.+...|.++|+.+....
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            356667788999999999999998874211          011 112222  2357778889999999999999987664


Q ss_pred             cc--CCceEEEEEec--CCCEEEEEEC------CCcEEEEECCCCceEEEeccCC-------------------------
Q 011457          257 GH--LSGVYCLGLHP--TIDILLTGGR------DSVCRVWDIRTKMQIFALAGHD-------------------------  301 (485)
Q Consensus       257 ~h--~~~v~~l~~~~--~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~-------------------------  301 (485)
                      ..  ...-..+.-.|  -++.+++++.      .|.|+.+|.++++.+..+....                         
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~  235 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW  235 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred             CccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence            22  11100111111  1344555543      4689999999999998764211                         


Q ss_pred             ------ccE-EEEEEcCCCCEEEEEeC-------------------CCCEEEEECCCCeEEeEeccCCC---------ce
Q 011457          302 ------NTV-CSVFTRPTDPQVVTGSH-------------------DSTIKFWDLRYGKTMLTLTHHKK---------SV  346 (485)
Q Consensus       302 ------~~v-~~l~~~~~~~~l~s~s~-------------------dg~I~iwd~~~~~~~~~~~~~~~---------~v  346 (485)
                            ..+ ....+.+....++.+..                   ...|.-.|+++++....+.....         +.
T Consensus       236 ~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~  315 (573)
T d1kb0a2         236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM  315 (573)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred             eecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccccee
Confidence                  011 13455666666654332                   12467778888887766543221         11


Q ss_pred             EEEEECCCC---CEEEEEcCCC-EEEEECCCCceeeee
Q 011457          347 RAMALHPTE---DCFASASAEN-IKKFNLPKGEFLHNM  380 (485)
Q Consensus       347 ~~l~~~p~~---~~l~~~~~~~-i~i~d~~~~~~~~~~  380 (485)
                      .......++   ..++.++.++ +..+|..+|+.+...
T Consensus       316 ~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~  353 (573)
T d1kb0a2         316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK  353 (573)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eecceecCCCceeeeeeccccceeEEeccccccccccc
Confidence            111222222   2445555555 889999999887543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.015  Score=50.92  Aligned_cols=206  Identities=12%  Similarity=0.037  Sum_probs=125.5

Q ss_pred             CCcceEEEEEccCCCEEEEEe-CCCeEEEEECCCCc----eEEEEcccccCEEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q 011457          174 HLGWVRSVAFDHSNTWFCTGS-ADRTIKIWDVAKGT----LKLTLTGHIEQVRGLAVSSKHTYMFSA-GDDKQVKCWDLE  247 (485)
Q Consensus       174 H~~~V~~l~~sp~~~~l~tgs-~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~V~iwd~~  247 (485)
                      ....+.+|+|++.++.|.-.. .++.|.-.++....    ....+......+..+++.+.+..|+.+ ...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            455678999998777666554 45677777664321    222233334567788988766555554 466789999998


Q ss_pred             CCeeEEEecccCCceEEEEEecCCCEEEEEEC--CCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCC
Q 011457          248 QNKVIRSYHGHLSGVYCLGLHPTIDILLTGGR--DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDST  324 (485)
Q Consensus       248 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~  324 (485)
                      .......+.........++++|...+|+....  .+.|.-.++............-.....+++.+.++.|+.+ ...+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            76655555555677899999997666665543  4567777776544333333333567899999877776655 55678


Q ss_pred             EEEEECCCCeEEeEecc--CCCceEEEEECCCCCEEEEEcCC-CEEEEECCCCceeeee
Q 011457          325 IKFWDLRYGKTMLTLTH--HKKSVRAMALHPTEDCFASASAE-NIKKFNLPKGEFLHNM  380 (485)
Q Consensus       325 I~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~~~-~i~i~d~~~~~~~~~~  380 (485)
                      |...|+...........  ......+|++.. +.++.+-... .|...+..++.....+
T Consensus       188 I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEEEECCCCcceEEE
Confidence            99889865433222222  223455677663 3333333233 3777777666544433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.011  Score=54.53  Aligned_cols=191  Identities=12%  Similarity=0.129  Sum_probs=123.9

Q ss_pred             EEEEcc---CCCEEEEEe-CCCeEEEEECCCCceEEEEcc-cccCEEEEEEc--CCCCEEEEEeCCC-------------
Q 011457          180 SVAFDH---SNTWFCTGS-ADRTIKIWDVAKGTLKLTLTG-HIEQVRGLAVS--SKHTYMFSAGDDK-------------  239 (485)
Q Consensus       180 ~l~~sp---~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~s--~~~~~l~s~~~dg-------------  239 (485)
                      .+++..   ||+||++.. .++.|-+-|+.+.+....+.- ....+..+...  |+..|++..+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            445543   788887776 578999999999998665433 33556666664  4567888877632             


Q ss_pred             -----cEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCC---------------cEEEEE------------
Q 011457          240 -----QVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDS---------------VCRVWD------------  287 (485)
Q Consensus       240 -----~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg---------------~i~iwd------------  287 (485)
                           .+.++|.++.+...++. -......++++++|+++++.+.+.               .+.+++            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 36788999998887775 234567899999999998887542               133333            


Q ss_pred             -----------CCC--C-ceEEEeccCCccEEEEEEcCCCCEEEEEe-CCCCEEEEECCCCeE-----------EeEecc
Q 011457          288 -----------IRT--K-MQIFALAGHDNTVCSVFTRPTDPQVVTGS-HDSTIKFWDLRYGKT-----------MLTLTH  341 (485)
Q Consensus       288 -----------~~~--~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~s-~dg~I~iwd~~~~~~-----------~~~~~~  341 (485)
                                 .+.  + ..+..+. -......+.++|||+++++++ .+.++.++|++.-..           +..-..
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                       221  1 1111111 112245678899999987655 578999999864211           111111


Q ss_pred             CCCceEEEEECCCCCEEEEEcCCC-EEEEECC
Q 011457          342 HKKSVRAMALHPTEDCFASASAEN-IKKFNLP  372 (485)
Q Consensus       342 ~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~  372 (485)
                      ..-.-..-+|..+|....+.--+. |..|++.
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            223445678888887777777776 9999984

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.019  Score=50.28  Aligned_cols=223  Identities=10%  Similarity=0.046  Sum_probs=138.4

Q ss_pred             CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe----eEEEecccCCceEEEEEecCC
Q 011457          197 RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAG-DDKQVKCWDLEQNK----VIRSYHGHLSGVYCLGLHPTI  271 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~  271 (485)
                      ..|+-.++.+......+. ....+..++|++..+.|+-.. .++.|.-.++....    ....+......+..|++.+.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            358888987765544444 456678999998887777654 55667777665321    112223334556788998766


Q ss_pred             CEEEEE-ECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeC--CCCEEEEECCCCeEEeEeccCCCceEE
Q 011457          272 DILLTG-GRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSH--DSTIKFWDLRYGKTMLTLTHHKKSVRA  348 (485)
Q Consensus       272 ~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~v~~  348 (485)
                      ..|... ...+.|.+.++........+.........++++|...+|+....  .+.|.-.++............-.....
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~g  168 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  168 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeE
Confidence            655555 45678999999877655555555667899999987666665543  345777776544333333333456789


Q ss_pred             EEECCCCCEEEEEcCC--CEEEEECCCCceeeeec-cCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 011457          349 MALHPTEDCFASASAE--NIKKFNLPKGEFLHNML-SQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQ  420 (485)
Q Consensus       349 l~~~p~~~~l~~~~~~--~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~  420 (485)
                      +++.+.+..|..+...  .|...++.......... .........+++..+.++.+-..++.|+..+..++....
T Consensus       169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~  243 (266)
T d1ijqa1         169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN  243 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceE
Confidence            9999887766665443  38888875443222111 122233556777754455555567888888877776543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.54  E-value=0.048  Score=53.50  Aligned_cols=256  Identities=12%  Similarity=0.078  Sum_probs=146.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcc--cccC--E--EEEEEcC--CCCEEEEE-------eCCCcEEEEECCCCee
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTG--HIEQ--V--RGLAVSS--KHTYMFSA-------GDDKQVKCWDLEQNKV  251 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~--V--~~l~~s~--~~~~l~s~-------~~dg~V~iwd~~~~~~  251 (485)
                      +..++.++.|+.+.-.|..+++.+.....  +...  .  .-+.+.+  .+..++..       +..+.|.-+|.++|+.
T Consensus       117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~  196 (582)
T d1flga_         117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcE
Confidence            44577788999999999999988754321  1100  0  0011111  12333333       2356799999999998


Q ss_pred             EEEecccC----------------------------------------Cce-EEEEEecCCCEEEEEEC-----------
Q 011457          252 IRSYHGHL----------------------------------------SGV-YCLGLHPTIDILLTGGR-----------  279 (485)
Q Consensus       252 ~~~~~~h~----------------------------------------~~v-~~l~~~~~~~~l~sg~~-----------  279 (485)
                      +..+....                                        ..+ ..+++.+..++++.+..           
T Consensus       197 ~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~  276 (582)
T d1flga_         197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccc
Confidence            87663211                                        111 23667777777766542           


Q ss_pred             -------------CCcEEEEECCCCceEEEeccCCcc-----------EEEEEEcCCC---CEEEEEeCCCCEEEEECCC
Q 011457          280 -------------DSVCRVWDIRTKMQIFALAGHDNT-----------VCSVFTRPTD---PQVVTGSHDSTIKFWDLRY  332 (485)
Q Consensus       280 -------------dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~l~~~~~~---~~l~s~s~dg~I~iwd~~~  332 (485)
                                   ...|...|+++++....++.....           +..+... ++   ..++..+.++.+.++|..+
T Consensus       277 ~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~-~g~~~~~v~~~~k~g~~~vldr~t  355 (582)
T d1flga_         277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cCCCCcCcccccccceeEEecccchhhhhcccccccccccccccccccccccccc-cccccceeEeecccccEEeecccC
Confidence                         235778899999988777532111           1222222 23   2566778899999999998


Q ss_pred             CeEEeEeccCCC---------------------------------------------ceEEEEECCCCCEEEEEcC----
Q 011457          333 GKTMLTLTHHKK---------------------------------------------SVRAMALHPTEDCFASASA----  363 (485)
Q Consensus       333 ~~~~~~~~~~~~---------------------------------------------~v~~l~~~p~~~~l~~~~~----  363 (485)
                      ++.+........                                             .-...+++|+..++.....    
T Consensus       356 G~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~  435 (582)
T d1flga_         356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CcccccccccCccccccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccc
Confidence            876543211100                                             0112244444433322111    


Q ss_pred             ------------------------------CCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 011457          364 ------------------------------ENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDW  413 (485)
Q Consensus       364 ------------------------------~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~  413 (485)
                                                    +.+.-+|+.+|+...+....... .........+++++|+.||.++-+|.
T Consensus       436 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p~-~~g~lstagglVF~Gt~dg~l~A~Da  514 (582)
T d1flga_         436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC-CSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccccccccccccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCCC-ccceeEEcCCeEEEeCCCCeEEEEEC
Confidence                                          12666788888887776433221 11111234458888999999999999


Q ss_pred             CCCcccccceeeeccCCCCCCccEEEEEEccCCC-EEEE
Q 011457          414 KSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGS-RLVT  451 (485)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~L~s  451 (485)
                      ++|+.+.++.....    .+..+   +.|..+|+ |++.
T Consensus       515 ~TGe~LW~~~~~~~----~~~~P---~ty~~~G~qYv~i  546 (582)
T d1flga_         515 KSGKELWKFQTGSG----IVSPP---ITWEQDGEQYLGV  546 (582)
T ss_dssp             TTCCEEEEEECSSC----CCSCC---EEEEETTEEEEEE
T ss_pred             CCCcEeEEEECCCC----ccccC---EEEEECCEEEEEE
Confidence            99999987764211    12222   45667885 4443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.47  E-value=0.045  Score=51.45  Aligned_cols=239  Identities=13%  Similarity=0.086  Sum_probs=130.5

Q ss_pred             ceEEEEEccCCCEEEEEe-CC----CeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCC-------------
Q 011457          177 WVRSVAFDHSNTWFCTGS-AD----RTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDD-------------  238 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs-~d----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-------------  238 (485)
                      .+..++++|+++++|.+- .+    ..|+++|+.+++.+...- .......++|.++++.|+-...|             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            345667899999887442 22    379999999998764221 11222568899999988755432             


Q ss_pred             ---CcEEEEECCCCee--EEEecc--cCCceEEEEEecCCCEEEEEEC---CCc--EEEEECCCCc--------eEEEec
Q 011457          239 ---KQVKCWDLEQNKV--IRSYHG--HLSGVYCLGLHPTIDILLTGGR---DSV--CRVWDIRTKM--------QIFALA  298 (485)
Q Consensus       239 ---g~V~iwd~~~~~~--~~~~~~--h~~~v~~l~~~~~~~~l~sg~~---dg~--i~iwd~~~~~--------~~~~~~  298 (485)
                         ..|..|.+.+...  ...+..  ....+..+..+.++++++....   +..  +.+.|+....        ....+.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence               2688888766522  223332  3345667788999998765432   333  4444544321        122222


Q ss_pred             cCCccEEEEEEcCCCCEEEEEe---CCCCEEEEECCCCeE---EeEeccCCCceEEEEECCCCCEEE-EEcCCC---EEE
Q 011457          299 GHDNTVCSVFTRPTDPQVVTGS---HDSTIKFWDLRYGKT---MLTLTHHKKSVRAMALHPTEDCFA-SASAEN---IKK  368 (485)
Q Consensus       299 ~~~~~v~~l~~~~~~~~l~s~s---~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~~~~l~-~~~~~~---i~i  368 (485)
                      .......-+.. .++.+++...   .++.|...++.....   ...+..+...+..-.+...+.+|+ ....++   |.+
T Consensus       285 ~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v  363 (430)
T d1qfma1         285 NFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (430)
T ss_dssp             SSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             ccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence            22333333322 2233333332   235666667665322   122333444454434444444554 444444   889


Q ss_pred             EECCCCceeeeeccCCcccEEEEEeCCCC--eEEEEeC---CCcEEEEeCCCCcc
Q 011457          369 FNLPKGEFLHNMLSQQKTIINSMAVNEEG--VLATGGD---NGSLWFWDWKSGHN  418 (485)
Q Consensus       369 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~---dg~I~iwd~~~~~~  418 (485)
                      +++..+...... ....+.+..+...++.  +.+.-++   =.+++-||+.+++.
T Consensus       364 ~~~~~~~~~~~~-~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         364 HDLATGALLKIF-PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EETTTCCEEEEE-CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EECCCCcEEEec-CCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            999888765443 3334555555555554  3332222   26899999988764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.36  E-value=0.041  Score=54.06  Aligned_cols=110  Identities=19%  Similarity=0.129  Sum_probs=68.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcccc--------cCE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 011457          187 NTWFCTGSADRTIKIWDVAKGTLKLTLTGHI--------EQV-RGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHG  257 (485)
Q Consensus       187 ~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--------~~V-~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~  257 (485)
                      +..|++++.++.|.-.|..+|+.+.++....        ..+ +.+++.  +..++.++.|+.+...|..+++.+.....
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeecc
Confidence            4456777888999999999999998874211        001 112222  34577888999999999999988765421


Q ss_pred             --cCCc--e--EEEEEec--CCCEEEEEE-------CCCcEEEEECCCCceEEEec
Q 011457          258 --HLSG--V--YCLGLHP--TIDILLTGG-------RDSVCRVWDIRTKMQIFALA  298 (485)
Q Consensus       258 --h~~~--v--~~l~~~~--~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~  298 (485)
                        +...  .  .-..+.+  .+..++..+       ..+.|.-+|.++++.+..+.
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~  201 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence              1100  0  0011111  133333332       35679999999999888764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.048  Score=47.67  Aligned_cols=226  Identities=12%  Similarity=0.142  Sum_probs=140.4

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccc
Q 011457          180 SVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQN-KVIRSYHGH  258 (485)
Q Consensus       180 ~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~-~~~~~~~~h  258 (485)
                      +.-.+|..+.||.=+ ..++.|+|+++.+.++.+.- ...|.--.|-.+. .|+..+ +..|+-|+++.. .+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            344678888777665 46899999999998888874 4567667776554 455553 467999999643 456666544


Q ss_pred             C----CceEEEEEecCCCEEEEEEC-------CCcEEEEECCCCceEEEeccCCccEEEEEEcCCC---CEEEE---EeC
Q 011457          259 L----SGVYCLGLHPTIDILLTGGR-------DSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTD---PQVVT---GSH  321 (485)
Q Consensus       259 ~----~~v~~l~~~~~~~~l~sg~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s---~s~  321 (485)
                      .    ..|..-..+++.++++..|-       .|.+.+|..+.+ .-+.+.+|......+.+..+.   ..++.   +..
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            3    45777777888886655432       467889988644 566777777666555443221   12222   223


Q ss_pred             CCCEEEEECCCCe---E-----EeEe-cc---CCCceEEEEECCCCCEEEEEcCCC-EEEEECCCCceeeeeccCCcccE
Q 011457          322 DSTIKFWDLRYGK---T-----MLTL-TH---HKKSVRAMALHPTEDCFASASAEN-IKKFNLPKGEFLHNMLSQQKTII  388 (485)
Q Consensus       322 dg~I~iwd~~~~~---~-----~~~~-~~---~~~~v~~l~~~p~~~~l~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~i  388 (485)
                      .+.+++.++....   .     ...+ -.   ...--.++..++.-..+..-+..+ +++||+.++..+..-....+...
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence            3678888876421   1     1111 11   123456777787777777777776 99999999998877543333333


Q ss_pred             EEEEeCCCCeEEEEeCCCcEEE
Q 011457          389 NSMAVNEEGVLATGGDNGSLWF  410 (485)
Q Consensus       389 ~~~~~~~~~~l~sg~~dg~I~i  410 (485)
                      .+......+-+++...+|.|..
T Consensus       302 ~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         302 VTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEE
T ss_pred             EeccCCCCceEEEECCCCeEEE
Confidence            3333333334555556676653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.08  E-value=0.12  Score=48.33  Aligned_cols=240  Identities=9%  Similarity=0.026  Sum_probs=129.2

Q ss_pred             CEEEEEEcCCCCEEEEE-e----CCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECC-------------
Q 011457          219 QVRGLAVSSKHTYMFSA-G----DDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRD-------------  280 (485)
Q Consensus       219 ~V~~l~~s~~~~~l~s~-~----~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~d-------------  280 (485)
                      .+..++++|++++++.+ +    +-..|+++|+++++.+...- .......++|.++++.|+....+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            34556789999988744 2    23479999999998765321 11122568899999977765433             


Q ss_pred             ---CcEEEEECCCCce--EEEeccC--CccEEEEEEcCCCCEEEEEeC---CCCEEE--EECCCCe--------EEeEec
Q 011457          281 ---SVCRVWDIRTKMQ--IFALAGH--DNTVCSVFTRPTDPQVVTGSH---DSTIKF--WDLRYGK--------TMLTLT  340 (485)
Q Consensus       281 ---g~i~iwd~~~~~~--~~~~~~~--~~~v~~l~~~~~~~~l~s~s~---dg~I~i--wd~~~~~--------~~~~~~  340 (485)
                         ..|..|.+.+...  +..+...  ...+..+..+.++++++....   ++...+  .|+....        ....+.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence               2578888876532  2333332  335677788999998765432   233344  4543221        111222


Q ss_pred             cCCCceEEEEECCCCCEEEEEcCCC----EEEEECCCCce--eeeeccCCcccEE--EEEeCCCCeEEEEeCCC--cEEE
Q 011457          341 HHKKSVRAMALHPTEDCFASASAEN----IKKFNLPKGEF--LHNMLSQQKTIIN--SMAVNEEGVLATGGDNG--SLWF  410 (485)
Q Consensus       341 ~~~~~v~~l~~~p~~~~l~~~~~~~----i~i~d~~~~~~--~~~~~~~~~~~i~--~~~~~~~~~l~sg~~dg--~I~i  410 (485)
                      .....+.-+. +.++.+++....+.    +...++.....  ...+...+...+.  .+.+..+.+++..-.++  .|++
T Consensus       285 ~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v  363 (430)
T d1qfma1         285 NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (430)
T ss_dssp             SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence            2222233222 22333444443332    66666654432  2333344443332  33333443444444554  5888


Q ss_pred             EeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECC----CcEEEecCCCCCC
Q 011457          411 WDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEAD----KTIKMWREDETAT  468 (485)
Q Consensus       411 wd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~D----g~I~iW~~~~~~~  468 (485)
                      +++.++.......        ...+.|..+..+++...+...-.+    .++.-+|+.++..
T Consensus       364 ~~~~~~~~~~~~~--------~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         364 HDLATGALLKIFP--------LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EETTTCCEEEEEC--------CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EECCCCcEEEecC--------CCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            9998776433211        123456666666666554433323    6788888877643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.00  E-value=0.078  Score=48.49  Aligned_cols=116  Identities=12%  Similarity=0.036  Sum_probs=73.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeeEEE--e-cccCCceEEEEEecCCCEEEEEECC-CcEE
Q 011457          220 VRGLAVSSKHTYMFSAGDDK-----------QVKCWDLEQNKVIRS--Y-HGHLSGVYCLGLHPTIDILLTGGRD-SVCR  284 (485)
Q Consensus       220 V~~l~~s~~~~~l~s~~~dg-----------~V~iwd~~~~~~~~~--~-~~h~~~v~~l~~~~~~~~l~sg~~d-g~i~  284 (485)
                      +.......+++.++.|+.+.           .+.+||+.+++....  . ..+.......++.+++.+++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            33444556777777777431           377999998764322  1 2233334466788999999888765 5899


Q ss_pred             EEECCCCceEEEecc-CCccEEEEEEcCCCCEEEEEeCC------CCEEEEECCCCeE
Q 011457          285 VWDIRTKMQIFALAG-HDNTVCSVFTRPTDPQVVTGSHD------STIKFWDLRYGKT  335 (485)
Q Consensus       285 iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~s~d------g~I~iwd~~~~~~  335 (485)
                      +||..+..-...-.. ....-.+.+..+++..++.|+.+      ..+.+||..+.+-
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            999987653321111 11122355667789888888753      3689999987653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.16  Score=46.38  Aligned_cols=176  Identities=14%  Similarity=0.115  Sum_probs=104.5

Q ss_pred             ceEEEEEccCCCEEEEEeCCCeEEEEECCC-----------CceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011457          177 WVRSVAFDHSNTWFCTGSADRTIKIWDVAK-----------GTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWD  245 (485)
Q Consensus       177 ~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~-----------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd  245 (485)
                      ..+-+++++...+|+.|+.++ ++|-.++.           .......  ....|..++|+.+  .|+.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            355788888888888888775 66766321           1111111  2246888999754  45544 456788888


Q ss_pred             CCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEec-----cCCccEEEEEEcCCCCEEEEEe
Q 011457          246 LEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALA-----GHDNTVCSVFTRPTDPQVVTGS  320 (485)
Q Consensus       246 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~l~s~s  320 (485)
                      ...-...........++..+.++|.  .++....+|.+.++++..++......     .-.+.+.+++|++.+.+++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            7765544444444567788887774  67778889999999998876433221     1235567777777777676653


Q ss_pred             CCCCEEEE-ECCCCeEEeEeccCCCceEEEEECCCCCEEEEE
Q 011457          321 HDSTIKFW-DLRYGKTMLTLTHHKKSVRAMALHPTEDCFASA  361 (485)
Q Consensus       321 ~dg~I~iw-d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~  361 (485)
                      .++ ..+- ++.....+.........|.+|.|-.+..++++-
T Consensus       190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            221 1111 111111110111233468899998777766655

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.094  Score=45.66  Aligned_cols=213  Identities=10%  Similarity=0.112  Sum_probs=94.7

Q ss_pred             CeEEEEECCCCceEEE--EcccccCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeeEEEeccc--CCceE
Q 011457          197 RTIKIWDVAKGTLKLT--LTGHIEQVRGLAVSSKHTYMFSAGD---------DKQVKCWDLEQNKVIRSYHGH--LSGVY  263 (485)
Q Consensus       197 g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~s~~~---------dg~V~iwd~~~~~~~~~~~~h--~~~v~  263 (485)
                      ..+.+||+.+++-...  +......-..+.+  ++..++.|+.         -..+.+||..+.+....-...  ...-.
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            3688999988754332  2211111122222  4555555542         246778888776554322111  11111


Q ss_pred             EEEEecCCCEEEEEECCCc-----EEEEECCCCceEEEecc--CCccEEEEEEcCCCCEEEEEeCC-----CCEEEEECC
Q 011457          264 CLGLHPTIDILLTGGRDSV-----CRVWDIRTKMQIFALAG--HDNTVCSVFTRPTDPQVVTGSHD-----STIKFWDLR  331 (485)
Q Consensus       264 ~l~~~~~~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~s~d-----g~I~iwd~~  331 (485)
                      ++.  .++..++.++.++.     +..+|..+..-......  .......+ .. ++..++.|+.+     ..+..||..
T Consensus        97 ~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~-~~~~~~~GG~~~~~~~~~~~~~d~~  172 (288)
T d1zgka1          97 VGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA-VL-NRLLYAVGGFDGTNRLNSAECYYPE  172 (288)
T ss_dssp             EEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-EE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             ccc--cceeeEEecceecccccceeeeeccccCccccccccccccccceee-ee-eecceEecCcccccccceEEEeecc
Confidence            222  24556666554443     44466655432211110  01111122 22 34455555543     357888887


Q ss_pred             CCeEEeEeccC-CCceEEEEECCCCCEEEEEcCC------CEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeC
Q 011457          332 YGKTMLTLTHH-KKSVRAMALHPTEDCFASASAE------NIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGD  404 (485)
Q Consensus       332 ~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~  404 (485)
                      +.+....-... .....+.... ++.+++.++.+      ....+|..+.+....-.......-.+++...+.+++.|+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~  251 (288)
T d1zgka1         173 RNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY  251 (288)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             ccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecC
Confidence            65433221111 1111222222 34445544333      2677787766543321111111111233333346666665


Q ss_pred             CC-----cEEEEeCCCC
Q 011457          405 NG-----SLWFWDWKSG  416 (485)
Q Consensus       405 dg-----~I~iwd~~~~  416 (485)
                      ++     .|.+||+.+.
T Consensus       252 ~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         252 DGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CSSCBCCEEEEEETTTT
T ss_pred             CCCeecceEEEEECCCC
Confidence            54     3788998875

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.04  E-value=0.49  Score=42.52  Aligned_cols=192  Identities=8%  Similarity=0.196  Sum_probs=113.5

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEc------CCCCEEEEEe--CC--CcEEEEECC-CCeeEE
Q 011457          185 HSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVS------SKHTYMFSAG--DD--KQVKCWDLE-QNKVIR  253 (485)
Q Consensus       185 p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s------~~~~~l~s~~--~d--g~V~iwd~~-~~~~~~  253 (485)
                      |+..+++....++-|.+||++ |+.+..+.  .+.++.+..-      ....-|++++  .+  .+|.+|.+. ....+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            455666666677779999985 77776654  3455555543      2222345554  22  367788774 233344


Q ss_pred             Eeccc-------CCceEEEEE--ecC-CC-EEEEEECCCcEEEEECC---CC----ceEEEeccCCccEEEEEEcCCCCE
Q 011457          254 SYHGH-------LSGVYCLGL--HPT-ID-ILLTGGRDSVCRVWDIR---TK----MQIFALAGHDNTVCSVFTRPTDPQ  315 (485)
Q Consensus       254 ~~~~h-------~~~v~~l~~--~~~-~~-~l~sg~~dg~i~iwd~~---~~----~~~~~~~~~~~~v~~l~~~~~~~~  315 (485)
                      .+...       ...++.+|+  ++. +. ++++...+|.+..|.+.   .+    +.+..+. ....+..+.+......
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            44221       124667776  554 44 56777789999888773   22    2334443 4567888999998899


Q ss_pred             EEEEeCCCCEEEEECCC-----CeEEeEecc--CCCceEEEEECC--CCC-EEEEEcCC-C-EEEEECCCC-ceeeee
Q 011457          316 VVTGSHDSTIKFWDLRY-----GKTMLTLTH--HKKSVRAMALHP--TED-CFASASAE-N-IKKFNLPKG-EFLHNM  380 (485)
Q Consensus       316 l~s~s~dg~I~iwd~~~-----~~~~~~~~~--~~~~v~~l~~~p--~~~-~l~~~~~~-~-i~i~d~~~~-~~~~~~  380 (485)
                      |+.+-++.-|..++...     +..+....+  ....+..|++-.  ++. +|++++.+ + ..+||.... +.+..|
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            99998887776666542     222222221  244667776532  323 55544433 3 999998663 555444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.12  Score=44.95  Aligned_cols=216  Identities=11%  Similarity=0.059  Sum_probs=97.5

Q ss_pred             CcEEEEECCCCeeEEE--ecccCCceEEEEEecCCCEEEEEEC---------CCcEEEEECCCCceEEEe--ccCCccEE
Q 011457          239 KQVKCWDLEQNKVIRS--YHGHLSGVYCLGLHPTIDILLTGGR---------DSVCRVWDIRTKMQIFAL--AGHDNTVC  305 (485)
Q Consensus       239 g~V~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~~--~~~~~~v~  305 (485)
                      ..|.+||+++++....  +......-. ++.. ++.+++.|+.         -..+.+||..+.+-...-  ......-.
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLA-GCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeE-EEEE-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            3578999988764432  221111112 2222 4566666653         135678887665432211  10111112


Q ss_pred             EEEEcCCCCEEEEEeCCCC-----EEEEECCCCeEEeEeccCCC-ceEEEEECCCCCEEEEEcCC------CEEEEECCC
Q 011457          306 SVFTRPTDPQVVTGSHDST-----IKFWDLRYGKTMLTLTHHKK-SVRAMALHPTEDCFASASAE------NIKKFNLPK  373 (485)
Q Consensus       306 ~l~~~~~~~~l~s~s~dg~-----I~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~~~------~i~i~d~~~  373 (485)
                      +..+  ++..++.++.++.     ...+|..+..-......... .-.++... ++..++.++.+      .+..||..+
T Consensus        97 ~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          97 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             cccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccc
Confidence            2222  4555555544443     44566665543221111111 11112222 33444444332      278888877


Q ss_pred             CceeeeeccCCcccEEEEEeCCCCeEEEEeCC-----CcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCE
Q 011457          374 GEFLHNMLSQQKTIINSMAVNEEGVLATGGDN-----GSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSR  448 (485)
Q Consensus       374 ~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  448 (485)
                      ++....-.........+.....+.+++.|+.+     .....+|..+.+.... .....+     ......+.  .++++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~-----r~~~~~~~--~~~~l  245 (288)
T d1zgka1         174 NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-APMKHR-----RSALGITV--HQGRI  245 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-CCCSSC-----CBSCEEEE--ETTEE
T ss_pred             cccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecc-cCccCc-----ccceEEEE--ECCEE
Confidence            65433221112222223334444455555544     3567777766443221 111111     11112222  25778


Q ss_pred             EEEEECCCc-----EEEecCCCCC
Q 011457          449 LVTCEADKT-----IKMWREDETA  467 (485)
Q Consensus       449 L~s~~~Dg~-----I~iW~~~~~~  467 (485)
                      ++.||.++.     |.+||+..+.
T Consensus       246 ~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         246 YVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEecCCCCeecceEEEEECCCCE
Confidence            888876543     7788887765

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=1.4  Score=39.88  Aligned_cols=174  Identities=13%  Similarity=0.095  Sum_probs=104.8

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 011457          218 EQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQ-----------NKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVW  286 (485)
Q Consensus       218 ~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iw  286 (485)
                      ....-+++++...+++.|+.++ ++|..+..           .......  .-..|..++|+.+  .|+.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            3456788888888888888775 56665321           1111111  1235888999754  45544 45678888


Q ss_pred             ECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEec-----cCCCceEEEEECCCCCEEEEE
Q 011457          287 DIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLT-----HHKKSVRAMALHPTEDCFASA  361 (485)
Q Consensus       287 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~~p~~~~l~~~  361 (485)
                      +...-............+..+.+.|.  .++....+|.+.++++..++......     .-...+.+++|++.|..++++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            88776555555555667888888765  57777889999999998876433211     113457778888777777766


Q ss_pred             cCCCEEE-EECCCCceeeeeccCCcccEEEEEeCCCCeEE
Q 011457          362 SAENIKK-FNLPKGEFLHNMLSQQKTIINSMAVNEEGVLA  400 (485)
Q Consensus       362 ~~~~i~i-~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  400 (485)
                      ..+...+ -++.....+.. .......+.++.|-.+..++
T Consensus       189 ~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~  227 (381)
T d1xipa_         189 RNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFL  227 (381)
T ss_dssp             ETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEE
T ss_pred             CCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEE
Confidence            4433222 12222211111 01234467888888777333

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.22  E-value=2.6  Score=37.35  Aligned_cols=186  Identities=12%  Similarity=0.113  Sum_probs=101.5

Q ss_pred             eEEEEEecCCCEEEEEEC------------CCcEEEEECCCCceE-EEec--cCC-----ccEEEEEE--cCCCC-EEEE
Q 011457          262 VYCLGLHPTIDILLTGGR------------DSVCRVWDIRTKMQI-FALA--GHD-----NTVCSVFT--RPTDP-QVVT  318 (485)
Q Consensus       262 v~~l~~~~~~~~l~sg~~------------dg~i~iwd~~~~~~~-~~~~--~~~-----~~v~~l~~--~~~~~-~l~s  318 (485)
                      .-.|...|+|..+++++.            .|.|.++|+.+.... ..+.  +..     -....+.+  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            445777787776665532            489999999765432 2221  110     11233333  44555 3445


Q ss_pred             Ee---CCCCEEEEECCCCe-EE---eEecc-CCCceEEEEECCCCCEEEEEcC----------------CCEEEEECCCC
Q 011457          319 GS---HDSTIKFWDLRYGK-TM---LTLTH-HKKSVRAMALHPTEDCFASASA----------------ENIKKFNLPKG  374 (485)
Q Consensus       319 ~s---~dg~I~iwd~~~~~-~~---~~~~~-~~~~v~~l~~~p~~~~l~~~~~----------------~~i~i~d~~~~  374 (485)
                      ..   ...+|.+|++.... .+   ..+.. .....+++.+..++.++++-..                ....+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   34578888875432 21   12222 2245788998888988887321                12334443333


Q ss_pred             ceeeeeccCCcccEEEEEeCCCC--eEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEE
Q 011457          375 EFLHNMLSQQKTIINSMAVNEEG--VLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTC  452 (485)
Q Consensus       375 ~~~~~~~~~~~~~i~~~~~~~~~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~  452 (485)
                      +.. . ....-...+.+++++++  ++++-+..+.|+.|++.............      -....-.+.+++++..+..+
T Consensus       197 ~~~-~-~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~------l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         197 DVR-V-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS------FDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CEE-E-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE------CSSEEEEEEECTTTCCEEEE
T ss_pred             ceE-E-EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec------CCCCCCccEEecCCCEEEEE
Confidence            322 1 12233567899999998  55666678899999987554333322221      12335567777644344444


Q ss_pred             ECC
Q 011457          453 EAD  455 (485)
Q Consensus       453 ~~D  455 (485)
                      +..
T Consensus       269 ~~p  271 (340)
T d1v04a_         269 CHP  271 (340)
T ss_dssp             EES
T ss_pred             ECC
Confidence            443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=92.95  E-value=1.8  Score=36.88  Aligned_cols=222  Identities=13%  Similarity=0.049  Sum_probs=103.6

Q ss_pred             cceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEcccccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 011457          176 GWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLTGHIEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSY  255 (485)
Q Consensus       176 ~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~  255 (485)
                      ..|..|+..  ....+.-. ||.|..|-....-.+..-......|..+..-... .++ - .|+.+..|.....-.....
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~-~~a-l-~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLA-L-KDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSE-EEE-E-ETTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCc-eee-e-eeeeeeccCCCcceeeccc
Confidence            457777663  22333334 7999999765443222222233455555543222 222 2 4899999976432211111


Q ss_pred             cccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEEeccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeE
Q 011457          256 HGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFALAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKT  335 (485)
Q Consensus       256 ~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~  335 (485)
                      ......+..++....  ..+. -.|+.+..|.-...............|..+.-.  ...++ ...++.+..|-......
T Consensus       100 ~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g~  173 (273)
T d1jtdb_         100 AEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFGQ  173 (273)
T ss_dssp             GGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTST
T ss_pred             cccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceeee-eecccceeEeecccCCc
Confidence            112233444444332  2222 248889988754332221111222345444432  22233 33478888886554322


Q ss_pred             EeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCceeeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 011457          336 MLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEFLHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWK  414 (485)
Q Consensus       336 ~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~  414 (485)
                      ..........|..|+....  ..+.-.++.++.|=......+.. .......|..++......++.  .||.|+.|-..
T Consensus       174 ~~~~~~~~~~v~~Is~G~~--h~~~l~dG~v~~WG~n~~Gql~~-~~~~~~~v~~I~~G~~~~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         174 TTVPAEAQSGVDDVAGGIF--HSLALKDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWYSLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             TSCCGGGSSSEEEEEECSS--EEEEEETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSCEEEE--ETTEEEEESTT
T ss_pred             ccccccccCCccceeccce--eeEEEecCcEEEcCCCCCCccCC-CccCCCCcEEEEeCcceEEEE--ECCEEEEECCC
Confidence            2222223445777765433  22223344588885433211111 011112355565544433333  48999999543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.39  E-value=3.5  Score=36.65  Aligned_cols=185  Identities=13%  Similarity=0.232  Sum_probs=107.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEec----C--CCEEEEEE-CC---CcEEEEECCC-CceEEE
Q 011457          228 KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHP----T--IDILLTGG-RD---SVCRVWDIRT-KMQIFA  296 (485)
Q Consensus       228 ~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~----~--~~~l~sg~-~d---g~i~iwd~~~-~~~~~~  296 (485)
                      ...+++.....+-|.+||+. |+.++.+.  .+.+..+..-.    .  ..-|++++ ++   .+|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            44566666666679999985 88877764  34555555432    1  22344444 32   3577887753 333443


Q ss_pred             eccC-------CccEEEEEE--cCC-CC-EEEEEeCCCCEEEEECC---CC----eEEeEeccCCCceEEEEECCCCCEE
Q 011457          297 LAGH-------DNTVCSVFT--RPT-DP-QVVTGSHDSTIKFWDLR---YG----KTMLTLTHHKKSVRAMALHPTEDCF  358 (485)
Q Consensus       297 ~~~~-------~~~v~~l~~--~~~-~~-~l~s~s~dg~I~iwd~~---~~----~~~~~~~~~~~~v~~l~~~p~~~~l  358 (485)
                      +...       ...+..+|+  ++. +. ++++...+|.+..|.+.   .+    +.++.+.. ...+..+.+.+....|
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSL  194 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcE
Confidence            3321       123566666  554 43 56777888999888763   22    23444433 4578899999988888


Q ss_pred             EEEcCCC-EEEEECCCC-----ceeeeecc-CCcccEEEEEe--CC--CC-eEEEEeCCCcEEEEeCCCC
Q 011457          359 ASASAEN-IKKFNLPKG-----EFLHNMLS-QQKTIINSMAV--NE--EG-VLATGGDNGSLWFWDWKSG  416 (485)
Q Consensus       359 ~~~~~~~-i~i~d~~~~-----~~~~~~~~-~~~~~i~~~~~--~~--~~-~l~sg~~dg~I~iwd~~~~  416 (485)
                      ..+-.+. +..++....     ..+..... ....-+..+++  ..  +| +|++.-.+++..+||..+.
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            8887664 766665421     22211111 12234444443  22  34 5555556789999998764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.24  E-value=3.5  Score=36.42  Aligned_cols=184  Identities=11%  Similarity=0.126  Sum_probs=104.6

Q ss_pred             eEEEEEccCCCEEEEEeC------------CCeEEEEECCCCceEE-E--Eccc-----ccCEEEEEE--cCCCC-EEEE
Q 011457          178 VRSVAFDHSNTWFCTGSA------------DRTIKIWDVAKGTLKL-T--LTGH-----IEQVRGLAV--SSKHT-YMFS  234 (485)
Q Consensus       178 V~~l~~sp~~~~l~tgs~------------dg~I~iwd~~~~~~~~-~--~~~h-----~~~V~~l~~--s~~~~-~l~s  234 (485)
                      --.|+..|+|..+++++.            .|.|.++|+.+.+... .  +.+.     .-....+.+  ..++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            446788888887766542            3899999987654322 1  1111     012233433  34554 4555


Q ss_pred             Ee---CCCcEEEEECCCCe--e--EEEec-ccCCceEEEEEecCCCEEEEEE--C-------------CCcEEEEECCCC
Q 011457          235 AG---DDKQVKCWDLEQNK--V--IRSYH-GHLSGVYCLGLHPTIDILLTGG--R-------------DSVCRVWDIRTK  291 (485)
Q Consensus       235 ~~---~dg~V~iwd~~~~~--~--~~~~~-~h~~~v~~l~~~~~~~~l~sg~--~-------------dg~i~iwd~~~~  291 (485)
                      ..   ...+|.+|++....  .  +.++. ........+++..++.+++|-.  .             -+...+|..+.+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            53   45678888875432  1  22222 2234578899998888877731  1             123344444444


Q ss_pred             ceEEEeccCCccEEEEEEcCCCCEEEEE-eCCCCEEEEECCCCeEEeE--eccCCCceEEEEECC-CCCEEEEEc
Q 011457          292 MQIFALAGHDNTVCSVFTRPTDPQVVTG-SHDSTIKFWDLRYGKTMLT--LTHHKKSVRAMALHP-TEDCFASAS  362 (485)
Q Consensus       292 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~~p-~~~~l~~~~  362 (485)
                      +...... .-.....|+++|++++|+++ +..+.|+.|++.....+..  ...-....-.+.+.+ ++.+.+++.
T Consensus       197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             ceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            4332222 34567899999999877655 4567899999875432221  112334456777765 455555543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.60  E-value=5.9  Score=36.41  Aligned_cols=114  Identities=16%  Similarity=0.243  Sum_probs=65.9

Q ss_pred             cceEEEEecCCcceEEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEc--------ccccCEEEEEEcCC---CCEEE
Q 011457          165 WKCYRVISGHLGWVRSVAFDHSNTWFCTGSADRTIKIWDVAKGTLKLTLT--------GHIEQVRGLAVSSK---HTYMF  233 (485)
Q Consensus       165 ~~~~~~l~~H~~~V~~l~~sp~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--------~h~~~V~~l~~s~~---~~~l~  233 (485)
                      ++......+ -..-++|+|.|++++|++--..|.|++++..+++......        .-......|+|+|+   ..+|.
T Consensus        17 f~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iY   95 (450)
T d1crua_          17 FDKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (450)
T ss_dssp             SCEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             cEEEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEE
Confidence            444444444 4566799999999988877557999999987775433221        12356788999985   34444


Q ss_pred             EEeC-------C----C--cEEEEECCCCe--------eEEEec-ccCCceEEEEEecCCCEEEEEEC
Q 011457          234 SAGD-------D----K--QVKCWDLEQNK--------VIRSYH-GHLSGVYCLGLHPTIDILLTGGR  279 (485)
Q Consensus       234 s~~~-------d----g--~V~iwd~~~~~--------~~~~~~-~h~~~v~~l~~~~~~~~l~sg~~  279 (485)
                      ....       +    +  .|..+......        .+..+. ........|.|.||+.+.++.+.
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            3211       1    1  13333332221        111111 11123578999999987776664

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=85.47  E-value=9.3  Score=32.06  Aligned_cols=224  Identities=12%  Similarity=0.055  Sum_probs=105.9

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEEEecCCCEEEEEECCCcEEEEECCCCceEEE
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLGLHPTIDILLTGGRDSVCRVWDIRTKMQIFA  296 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  296 (485)
                      ...|..|+--..  +.+... ||.|..|-....-.+..-......|..++.-.  ...+.- .||.+..|.....-....
T Consensus        25 ~~~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~--~~~~al-~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          25 QSGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-KDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             SSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS--SEEEEE-ETTEEEEEECCTTSTTCC
T ss_pred             CCCcEEEEccCC--EEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCC--Cceeee-eeeeeeccCCCcceeecc
Confidence            456777776433  233334 89999997654332222122234455554322  222222 489999998643222111


Q ss_pred             eccCCccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEeccCCCceEEEEECCCCCEEEEEcCCCEEEEECCCCce
Q 011457          297 LAGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTHHKKSVRAMALHPTEDCFASASAENIKKFNLPKGEF  376 (485)
Q Consensus       297 ~~~~~~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~~~~i~i~d~~~~~~  376 (485)
                      .......+..+.....  ..+. -.|+.+..|.-...............|..++-  ....++...++.++.|-......
T Consensus        99 ~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~g~~~~~G~~~~g~  173 (273)
T d1jtdb_          99 PAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVKNGGVIAWGDNYFGQ  173 (273)
T ss_dssp             CGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEETTEEEEEECCTTST
T ss_pred             ccccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEec--cceeeeeecccceeEeecccCCc
Confidence            1111233444443322  2222 24788888864432221111112234444433  23344444555577786543322


Q ss_pred             eeeeccCCcccEEEEEeCCCCeEEEEeCCCcEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEEEEECCC
Q 011457          377 LHNMLSQQKTIINSMAVNEEGVLATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLVTCEADK  456 (485)
Q Consensus       377 ~~~~~~~~~~~i~~~~~~~~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~s~~~Dg  456 (485)
                      ... .......|..++......++.  .||.|+-|=......+....        .....|..++-... ..++.  .||
T Consensus       174 ~~~-~~~~~~~v~~Is~G~~h~~~l--~dG~v~~WG~n~~Gql~~~~--------~~~~~v~~I~~G~~-~~~~l--~~g  239 (273)
T d1jtdb_         174 TTV-PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPT--------EALSGVSAIASGEW-YSLAL--KNG  239 (273)
T ss_dssp             TSC-CGGGSSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCG--------GGGSSCCEEEECSS-CEEEE--ETT
T ss_pred             ccc-cccccCCccceeccceeeEEE--ecCcEEEcCCCCCCccCCCc--------cCCCCcEEEEeCcc-eEEEE--ECC
Confidence            111 122334566776655443332  37999999653322211110        11223555654432 23333  489


Q ss_pred             cEEEecCCC
Q 011457          457 TIKMWREDE  465 (485)
Q Consensus       457 ~I~iW~~~~  465 (485)
                      .|..|-...
T Consensus       240 ~v~~WG~~~  248 (273)
T d1jtdb_         240 KVIAWGSSR  248 (273)
T ss_dssp             EEEEESTTC
T ss_pred             EEEEECCCC
Confidence            999996544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.67  E-value=16  Score=33.31  Aligned_cols=105  Identities=12%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--Eec------ccCCceEEEEEecC---CCEEEEEEC------
Q 011457          217 IEQVRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIR--SYH------GHLSGVYCLGLHPT---IDILLTGGR------  279 (485)
Q Consensus       217 ~~~V~~l~~s~~~~~l~s~~~dg~V~iwd~~~~~~~~--~~~------~h~~~v~~l~~~~~---~~~l~sg~~------  279 (485)
                      -...++|+|.|++++|++--.+|.|++++..+++...  .+.      .-......|+|+|+   ..+|.....      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            4567899999999987776557999999987775432  221      12356789999995   234433211      


Q ss_pred             -C----C--cEEEEECCCCce-------E-EEec-cCCccEEEEEEcCCCCEEEEEeC
Q 011457          280 -D----S--VCRVWDIRTKMQ-------I-FALA-GHDNTVCSVFTRPTDPQVVTGSH  321 (485)
Q Consensus       280 -d----g--~i~iwd~~~~~~-------~-~~~~-~~~~~v~~l~~~~~~~~l~s~s~  321 (485)
                       +    .  .+..+.......       + ..+. ........|.|.+++.++++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    1  133333322211       1 1111 11234578999999987776654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.77  E-value=12  Score=30.37  Aligned_cols=225  Identities=12%  Similarity=0.068  Sum_probs=114.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEecccCCceEEEE-EecCCCEEEEE------ECCCcEEEEECCCCceEEEeccC
Q 011457          228 KHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLG-LHPTIDILLTG------GRDSVCRVWDIRTKMQIFALAGH  300 (485)
Q Consensus       228 ~~~~l~s~~~dg~V~iwd~~~~~~~~~~~~h~~~v~~l~-~~~~~~~l~sg------~~dg~i~iwd~~~~~~~~~~~~~  300 (485)
                      +.++|+++...|.|.++-+..++.++--+   .+|.... -++.-.++...      -.-..|.+-++...-..+.+...
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            45678888888999999998887765433   2332211 11111222221      11123444444432334444433


Q ss_pred             C-ccEEEEEEcCCCCEEEEEeCCCCEEEEECCCCeEEeEecc-CCCceEEEEECCCCCEEEEEc-----CCCEEEEECCC
Q 011457          301 D-NTVCSVFTRPTDPQVVTGSHDSTIKFWDLRYGKTMLTLTH-HKKSVRAMALHPTEDCFASAS-----AENIKKFNLPK  373 (485)
Q Consensus       301 ~-~~v~~l~~~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~~~~-----~~~i~i~d~~~  373 (485)
                      . -.|.++++. +.+.+++|+......+|-+..|+...-... .-+-|+.+    .+.+++..+     ...+.+-|+.+
T Consensus       102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~S  176 (313)
T d2hu7a1         102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSS  176 (313)
T ss_dssp             CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             ceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEEeccc
Confidence            3 466777765 456788999888899998887765332211 11223332    133332211     00123334433


Q ss_pred             CceeeeeccCCcccEEEEEeCCCCeEEEEeCC-C--cEEEEeCCCCcccccceeeeccCCCCCCccEEEEEEccCCCEEE
Q 011457          374 GEFLHNMLSQQKTIINSMAVNEEGVLATGGDN-G--SLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLV  450 (485)
Q Consensus       374 ~~~~~~~~~~~~~~i~~~~~~~~~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~L~  450 (485)
                      |..  .++....+.++.....+++.++++-.+ |  ...-+|.++++.-...-.. ..-..-....|+-+-++|++++++
T Consensus       177 G~l--ri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~-kd~~sy~p~~I~~~~Y~Pdd~L~i  253 (313)
T d2hu7a1         177 GGL--RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPS-KDFSSYRPTAITWLGYLPDGRLAV  253 (313)
T ss_dssp             EEE--EEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSS-CHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             CCE--EEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCc-ccceeecceEEEeeeeCCCCcEEE
Confidence            332  112344455555666666655444332 1  1223466654321110000 000000123578888999999999


Q ss_pred             EEECCCcEEEecC
Q 011457          451 TCEADKTIKMWRE  463 (485)
Q Consensus       451 s~~~Dg~I~iW~~  463 (485)
                      .+-.||.=++|.-
T Consensus       254 iakrdG~s~lF~n  266 (313)
T d2hu7a1         254 VARREGRSAVFID  266 (313)
T ss_dssp             EEEETTEEEEEET
T ss_pred             EEecCCchheeec
Confidence            9999999998863