Citrus Sinensis ID: 011587
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LJ69 | 472 | Pentatricopeptide repeat- | yes | no | 0.964 | 0.985 | 0.525 | 1e-138 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.923 | 0.692 | 0.337 | 9e-81 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.923 | 0.747 | 0.350 | 1e-79 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.917 | 0.827 | 0.320 | 5e-76 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.937 | 0.729 | 0.334 | 6e-75 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.885 | 0.708 | 0.362 | 1e-74 | |
| Q9SN85 | 591 | Pentatricopeptide repeat- | no | no | 0.908 | 0.741 | 0.356 | 2e-74 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.904 | 0.801 | 0.340 | 9e-74 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.917 | 0.710 | 0.328 | 1e-73 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.896 | 0.668 | 0.339 | 2e-73 |
| >sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/470 (52%), Positives = 332/470 (70%), Gaps = 5/470 (1%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
PG R +LL+ + T KQIHAQL+ N L+ +LI YC+K ++ S+K+ H
Sbjct: 5 FPGPRFLSLLQQNS-KTLIQAKQIHAQLVINGCHDNSLFGKLIGHYCSKPSTESSSKLAH 63
Query: 64 F-VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCS 121
VF F P+ FLFNTL++C+ P+DS+ +FA + SK LL ++ T+VF LG+CAR S
Sbjct: 64 LLVFPRFGHPDKFLFNTLLKCSKPEDSIRIFANYASKSSLLYLNERTFVFVLGACARSAS 123
Query: 122 LSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L +GR +H V K GF++ + L+ TTL+HFYA N D+ +KVFD+MP R+S TWNA
Sbjct: 124 SSALRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNA 183
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GYCS K A A+VLFR SGV+PTDTTMVCVLS SQ GLLE G+ VH
Sbjct: 184 MIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVH 243
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+EK + PE DVFIGTALVDMYSKCGCL+NA +F M+ KNV TWT+MATG+A++G+
Sbjct: 244 GYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGR 303
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
GNE LL+ M + G+KPN +TFTSL +A H GLVEEG+ LF +MK+++GV P I+HY
Sbjct: 304 GNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYG 363
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVDLLG+AG ++EAY FI+ +PIKPDAIL RSL +AC+++G+ +GE++GK LL+++ E
Sbjct: 364 CIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIERE 423
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ ED+VALSN+ A +W +VE +RK+MK +R++T PG S +
Sbjct: 424 DEKLS-GSECEDYVALSNVLAHKGKWVEVEKLRKEMKERRIKTRPGYSFV 472
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 182/539 (33%), Positives = 280/539 (51%), Gaps = 94/539 (17%)
Query: 2 LSLPGHRCFALLK----LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCT---KKA 54
+++ H C +LL L+A+T QIH I + + + + L+C A
Sbjct: 1 MTIAIHHCLSLLNSCKNLRALT------QIHGLFIKYGVDTDSYFTGKLILHCAISISDA 54
Query: 55 SPQSTKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYV 110
P + +++ F P+ F+FNTL+R P +SV VF + KG + D F++
Sbjct: 55 LPYARRLL----LCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFA 110
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-------------- 156
F + + F SL T G Q+H K G ++ V TTLI Y
Sbjct: 111 FVIKAVENFRSLRT---GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM 167
Query: 157 -----------------NKDISSGKKVFDQMPMRSSATWNAMINGYCS----QSKK---- 191
D++ +++FD+M +R+ +WN M+ GY +S K
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 192 -----------------AKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
A + +FN + + FR++ +G+ P + ++ VLS SQ G
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL--QRAGMSPNEVSLTGVLSACSQSGSF 285
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-VLTWTAMA 292
EFG +HG++EK Y V + AL+DMYS+CG + A L+F M+EK +++WT+M
Sbjct: 286 EFGKILHGFVEKAGY--SWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMI 343
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G+A+HG+G EA+RL + M GV P+ ++F SL AC HAGL+EEG F MK + +
Sbjct: 344 AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHI 403
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
EP I+HY C+VDL GR+G L++AY+FI +PI P AI+WR+LL AC+ HG++ L E+V +
Sbjct: 404 EPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L +L P S D V LSN YA+A +W DV S+RK M V+R++ S+++
Sbjct: 464 RLNELDPN--------NSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 266/474 (56%), Gaps = 29/474 (6%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHF 64
+C LL+ +++ + ++QIHA I + ++ L LI Y SP H
Sbjct: 16 EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLI-FYLVSLPSPPPMSYAHK 74
Query: 65 VFTHFDPP-NLFLFNTLIRCTPP-QDSVLVFAYWVS---KGLLTFDDFTYVFALGSCARF 119
VF+ + P N+F++NTLIR +S+ F+ + GL+ D TY F + +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT-- 132
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
+++ + LG IH V + GF + V +L+H YA+ D++S KVFD+MP + WN
Sbjct: 133 -TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ING+ K + AL L+ +M + G+KP T+V +LS +++G L G V
Sbjct: 192 SVINGFAENGKPEE-----ALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H YM K ++ L+D+Y++CG ++ A +F M +KN ++WT++ G+A++G
Sbjct: 245 HVYMIKVGLT--RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 300 KGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EAI L M G+ P +TF + AC H G+V+EG F M+ ++ +EP I+H
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 362
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ C+VDLL RAG +++AY +I +P++P+ ++WR+LL AC VHGD L E +LQL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 422
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
P S D+V LSN+YAS +RW DV+ +RKQM V+ PG S+++
Sbjct: 423 PN--------HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 258/490 (52%), Gaps = 48/490 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + + + K+I+A +I + L + +C K + +F PN+
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDK---IEDMDYATRLFNQVSNPNV 73
Query: 75 FLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+N++IR D + ++ + K D FT+ F SCA SL + +LG+Q
Sbjct: 74 FLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCA---SLGSCYLGKQ 130
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--SQ 188
+H H+ K G F+V+ LI Y D+ KVFD+M R +WN++++GY Q
Sbjct: 131 VHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190
Query: 189 SKKAKD------------------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KKAK C A+ FR+M ++G++P + +++ VL
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREM--QLAGIEPDEISLISVL 248
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+QLG LE G +H Y E+ ++ + V AL++MYSKCG + A+ +F +M K+
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRGFLKQTGVC--NALIEMYSKCGVISQAIQLFGQMEGKD 306
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W+ M +G A HG + AI + M+ VKPN +TF L +AC H G+ +EGL FD
Sbjct: 307 VISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFD 366
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+ + +EP I+HY C++D+L RAG LE A +P+KPD+ +W SLLS+C G++
Sbjct: 367 MMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNL 426
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ L++L+PE D+ ++V L+NIYA +W DV +RK ++ + ++
Sbjct: 427 DVALVAMDHLVELEPE----DMG----NYVLLANIYADLGKWEDVSRLRKMIRNENMKKT 478
Query: 465 PGSSILQTTT 474
PG S+++
Sbjct: 479 PGGSLIEVNN 488
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 167/500 (33%), Positives = 257/500 (51%), Gaps = 48/500 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +KQIHA+++ L +C S VF FD P+
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 75 FLFNTLIR---CT-PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+N +IR C+ P+ S+L++ + + +T+ L +C+ +LS Q
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSA-PHNAYTFPSLLKACS---NLSAFEETTQ 136
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH +TK G+ +V +LI+ YA + +FD++P +WN++I GY K
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 191 K--------------------------AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
D AL LF +M S V+P + ++ L
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEM--QNSDVEPDNVSLANAL 254
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +QLG LE G +H Y+ KT D +G L+DMY+KCG ++ AL +F +++K+
Sbjct: 255 SACAQLGALEQGKWIHSYLNKT--RIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKS 312
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V WTA+ +G A HG G EAI M+ G+KPN +TFT++ AC + GLVEEG +F
Sbjct: 313 VQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M+ + ++P I+HY CIVDLLGRAG L+EA FI +P+KP+A++W +LL AC +H ++
Sbjct: 373 SMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNI 432
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE++G+IL+ + P +V +NI+A ++W R+ MK + V
Sbjct: 433 ELGEEIGEILIAIDP--------YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKV 484
Query: 465 PGSSI--LQTTTHYTLDGFR 482
PG S L+ TTH L G R
Sbjct: 485 PGCSTISLEGTTHEFLAGDR 504
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 249/453 (54%), Gaps = 26/453 (5%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-- 83
QI A I + ++ A+LI +CT+ + S +F P++ +FN++ R
Sbjct: 47 QIQAYAIKSHIEDVSFVAKLIN-FCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYS 105
Query: 84 --TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
T P + +F + G+L D++T+ L +CA +L GRQ+H K G
Sbjct: 106 RFTNPLEVFSLFVEILEDGILP-DNYTFPSLLKACAVAKALEE---GRQLHCLSMKLGLD 161
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
NV V TLI+ Y +D+ S + VFD++ +NAMI GY +++ + AL
Sbjct: 162 DNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNE-----ALS 216
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LFR+M +KP + T++ VLS + LG L+ G +H Y +K + V + TAL+
Sbjct: 217 LFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY--VKVNTALI 272
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DM++KCG LD+A+ IF +MR K+ W+AM A HGK +++ + + MR V+P+ +
Sbjct: 273 DMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEI 332
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF L AC H G VEEG F M SK+G+ P IKHY +VDLL RAG+LE+AY FI
Sbjct: 333 TFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDK 392
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PI P +LWR LL+AC+ H ++ L EKV + + +L D+V LSN+YA
Sbjct: 393 LPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDS--------HGGDYVILSNLYA 444
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
++W V+S+RK MK ++ PG S ++
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/466 (35%), Positives = 257/466 (55%), Gaps = 28/466 (6%)
Query: 19 TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T H++QIHA L+ T+ +++ ++ + P+ VF+ P L
Sbjct: 22 TGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLI-PRDINYSCRVFSQRLNPTLSHC 80
Query: 78 NTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NT+IR P + +F L + + FAL C + L G QIH
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKS---GDLLGGLQIHG 137
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ GF+ + L+ TTL+ Y++ ++ + KVFD++P R + +WN + + Y ++K+ +
Sbjct: 138 KIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYL-RNKRTR 196
Query: 194 DCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
D LVLF M DV G VKP T + L + LG L+FG VH ++++
Sbjct: 197 D----VLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGL--SG 250
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ + LV MYS+CG +D A +F MRE+NV++WTA+ +G+A++G G EAI + M
Sbjct: 251 ALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEML 310
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS-KWGVEPHIKHYSCIVDLLGRAGH 371
G+ P T T L +AC H+GLV EG+ FD M+S ++ ++P++ HY C+VDLLGRA
Sbjct: 311 KFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARL 370
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L++AY+ I + +KPD+ +WR+LL AC VHGDV LGE+V L++L+ E +
Sbjct: 371 LDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAE--------EAG 422
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
D+V L N Y++ +W V +R MK KR+ T+PG S LQ T H
Sbjct: 423 DYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVH 468
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 254/493 (51%), Gaps = 57/493 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L++ +H+ IHA++I +LI++ T S + VF++ PN
Sbjct: 36 LRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCST----LDSVDYAYDVFSYVSNPN 91
Query: 74 LFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++L+ +I D V ++ + +L D++ L +C L + R
Sbjct: 92 VYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLP-DNYVITSVLKAC-------DLKVCR 143
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-- 187
+IH V K GF + V ++ Y + ++ + KK+FD+MP R MIN Y
Sbjct: 144 EIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECG 203
Query: 188 ---------QSKKAKDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCV 223
Q K KD AL LFR+M ++ V + T VCV
Sbjct: 204 FIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQME--NVSANEFTAVCV 261
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS S LG LE G VH ++E N F+G AL++MYS+CG ++ A +F MR+K
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSN--FVGNALINMYSRCGDINEARRVFRVMRDK 319
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V+++ M +G+A+HG EAI M + G +PN VT +L AC H GL++ GL +F
Sbjct: 320 DVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVF 379
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++MK + VEP I+HY CIVDLLGR G LEEAY FI IPI+PD I+ +LLSAC +HG+
Sbjct: 380 NSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGN 439
Query: 404 VALGEKVGKILLQLQ-PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+ LGEK+ K L + + P+ S +V LSN+YAS+ +W + +R+ M+ +E
Sbjct: 440 MELGEKIAKRLFESENPD---------SGTYVLLSNLYASSGKWKESTEIRESMRDSGIE 490
Query: 463 TEPGSSILQTTTH 475
EPG S ++
Sbjct: 491 KEPGCSTIEVDNQ 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/490 (32%), Positives = 267/490 (54%), Gaps = 48/490 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKAS-PQSTKIVHF---VFTHFD 70
L++ ++ S +K IH L+ L S A + C ++ + T ++ + +F+
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78
Query: 71 PPNLFLFNTLIRC-TPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PNLF+FN LIRC + + F ++ K + D+ T+ F + + + + + +
Sbjct: 79 NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE---MECVLV 135
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G Q H + + GF +V V +L+H YA+ I++ ++F QM R +W +M+ GYC
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCK 195
Query: 188 --------------------------QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+C A+ LF M + GV +T MV
Sbjct: 196 CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKRE--GVVANETVMV 253
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
V+S + LG LEFG + Y+ K+ +M N + +GTALVDM+ +CG ++ A+ +F +
Sbjct: 254 SVISSCAHLGALEFGERAYEYVVKS-HMTVN-LILGTALVDMFWRCGDIEKAIHVFEGLP 311
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
E + L+W+++ G+A+HG ++A+ M G P VTFT++ +AC H GLVE+GL
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+++NMK G+EP ++HY CIVD+LGRAG L EA NFI+ + +KP+A + +LL AC ++
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIY 431
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ + E+VG +L++++PE S +V LSNIYA A +W +ES+R MK K V
Sbjct: 432 KNTEVAERVGNMLIKVKPE--------HSGYYVLLSNIYACAGQWDKIESLRDMMKEKLV 483
Query: 462 ETEPGSSILQ 471
+ PG S+++
Sbjct: 484 KKPPGWSLIE 493
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 253/504 (50%), Gaps = 72/504 (14%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYC-TKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T + QIHA I + L A I +C T + H +F N F +N
Sbjct: 35 TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94
Query: 79 TLIRCTPPQD------SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
T+IR D ++ +F +S + + FT+ L +CA+ + G+QIH
Sbjct: 95 TIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE---GKQIH 151
Query: 133 VHVTKRGFMFNVLVATTLIHFYAS----------------NKDI---------------- 160
K GF + V + L+ Y KD+
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211
Query: 161 -------------SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
+ + +FD+M RS +WN MI+GY S + KD A+ +FR+M
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY-SLNGFFKD----AVEVFREM- 265
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
++P T+V VL S+LG LE G +H Y E + D +G+AL+DMYSKC
Sbjct: 266 -KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI--RIDDVLGSALIDMYSKC 322
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++ A+ +F R+ +NV+TW+AM G AIHG+ +AI MR GV+P+ V + +L
Sbjct: 323 GIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 382
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GLVEEG F M S G+EP I+HY C+VDLLGR+G L+EA FI+ +PIKPD
Sbjct: 383 TACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPD 442
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
++W++LL AC + G+V +G++V IL+ + P S +VALSN+YAS W
Sbjct: 443 DVIWKALLGACRMQGNVEMGKRVANILMDMVPH--------DSGAYVALSNMYASQGNWS 494
Query: 448 DVESVRKQMKVKRVETEPGSSILQ 471
+V +R +MK K + +PG S++
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLID 518
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| 225451344 | 471 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.942 | 0.660 | 1e-169 | |
| 356547105 | 477 | PREDICTED: pentatricopeptide repeat-cont | 0.962 | 0.972 | 0.601 | 1e-161 | |
| 356542056 | 595 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 0.781 | 0.585 | 1e-160 | |
| 147796458 | 437 | hypothetical protein VITISV_022137 [Viti | 0.850 | 0.938 | 0.607 | 1e-148 | |
| 42564994 | 472 | mitochondrial editing factor 20 [Arabido | 0.964 | 0.985 | 0.525 | 1e-136 | |
| 297834808 | 471 | pentatricopeptide repeat-containing prot | 0.962 | 0.985 | 0.512 | 1e-132 | |
| 255580953 | 313 | pentatricopeptide repeat-containing prot | 0.643 | 0.990 | 0.680 | 1e-124 | |
| 449435742 | 318 | PREDICTED: pentatricopeptide repeat-cont | 0.641 | 0.971 | 0.613 | 1e-110 | |
| 225439325 | 623 | PREDICTED: pentatricopeptide repeat-cont | 0.906 | 0.701 | 0.351 | 2e-83 | |
| 225425668 | 595 | PREDICTED: pentatricopeptide repeat-cont | 0.910 | 0.737 | 0.390 | 3e-81 |
| >gi|225451344|ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970 [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/451 (66%), Positives = 351/451 (77%), Gaps = 7/451 (1%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
HIKQ+HA LITNA+ SPPL A+LI YC + S + F H PNLFLFNTLI+
Sbjct: 27 HIKQLHAHLITNAVSSPPLLAKLIHHYC----AFSSPHYAYTFFIHLRSPNLFLFNTLIK 82
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
C PP S+LVFA WVS+ L FDDFTY+FALG+CAR SL W GRQIH + K+G
Sbjct: 83 CLPPSSSILVFADWVSREALVFDDFTYIFALGACARSPSL---WEGRQIHARILKQGVWS 139
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NVLV TT IHFYA+N D++ + VFD+M RSS TWNAMI GYCSQ K A +ALVL
Sbjct: 140 NVLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVL 199
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR MLVD GVKPTDTTMVCVLS +SQLG+LE G VHGY+EKT P NDVF+GT LVD
Sbjct: 200 FRAMLVDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVD 259
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MYSKCGCL +AL IF M+E+NVLTWTAM TG+A HG+G EA+ LLD M GVKPNAVT
Sbjct: 260 MYSKCGCLGSALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVT 319
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
FTSLF+ACCHAGLVEEGL LF +M+SK+GV P I+HY CIVDLLGRAGHL+EAY+F+ G+
Sbjct: 320 FTSLFSACCHAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGM 379
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++PDAILWRSLLSAC VH DV +GE+VGK+LLQLQP+ +F D+ SEDF+ALSN+YAS
Sbjct: 380 PVEPDAILWRSLLSACKVHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYAS 439
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT 473
AERW DVE+VR+ MKVK +ET+PG S +QT+
Sbjct: 440 AERWEDVETVREAMKVKGIETKPGCSSVQTS 470
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547105|ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/474 (60%), Positives = 349/474 (73%), Gaps = 10/474 (2%)
Query: 4 LPGHRCFALL-KLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS--TK 60
LP RC + L L ++ +IKQIHAQLITN LKSP +A+LI+ YC SP
Sbjct: 5 LPRFRCISFLYSLPKLSY--NIKQIHAQLITNGLKSPTFWAKLIEHYC---GSPDQHIAS 59
Query: 61 IVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
H VF +FD P+LFLFNTLIRC P D +L+F S+GL+ FD++TY F LG+CAR
Sbjct: 60 NAHLVFQYFDKPDLFLFNTLIRCVQPNDCILIFQNEFSRGLMYFDEYTYNFVLGACARSP 119
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S STLW+GRQ+H + K GF N+LV TT I+FYASNKDI S ++VFD+MP RS+ TWNA
Sbjct: 120 SASTLWVGRQLHARIVKHGFESNILVPTTKIYFYASNKDIISARRVFDEMPRRSTVTWNA 179
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY SQ + K A NAL LF DMLVDVS +KPT TT+V VLS SQ+G+LE GAC+H
Sbjct: 180 MITGYSSQKEGNKKYALNALSLFIDMLVDVSVIKPTGTTIVSVLSAVSQIGMLETGACIH 239
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G+ EKT PE+DVFIGT LVDMYSKCGCLD+AL +F RM +KN+LTWTAM T +AIHGK
Sbjct: 240 GFAEKTVCTPEDDVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNILTWTAMTTSLAIHGK 299
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G +A+ +L M GVKPN TFTS +ACCH GLVEEGL LF MK +G+ P IKHY
Sbjct: 300 GKQALEVLYKMGAYGVKPNEATFTSFLSACCHGGLVEEGLILFHEMKRTFGMMPQIKHYG 359
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVDLLGRAG+LEEAY+FIM +PI PDA++WRSLL AC +HGDV +GEKVGK LLQL+ E
Sbjct: 360 CIVDLLGRAGNLEEAYDFIMRMPINPDAVIWRSLLGACKIHGDVVMGEKVGKFLLQLE-E 418
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
+ + + SED++ALSN+YA AE+W DVE VRK MK K + ++ GSS +QT +
Sbjct: 419 WSSAE-SPKSEDYIALSNVYALAEKWDDVEIVRKTMKSKGILSKAGSSAVQTVS 471
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542056|ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/473 (58%), Positives = 344/473 (72%), Gaps = 8/473 (1%)
Query: 9 CFALLKLK-AITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS--TKIVHFV 65
C L+KL+ +KQIHAQLITN LK P +A+LI+ YC SP V
Sbjct: 128 CDLLIKLQDKFNVSCQMKQIHAQLITNGLKYPTFWAKLIEHYC---GSPDQHIANNARLV 184
Query: 66 FTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
F +FD P+LFLFNTLIRC P DS+L+F S+GL+ FD++TY F LG+CAR S STL
Sbjct: 185 FQYFDKPDLFLFNTLIRCVQPNDSILIFRNEFSRGLMFFDEYTYNFVLGACARSPSASTL 244
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
W+GRQ+H + K G N++V TT ++FYASNKDI S +KVFD+MP RS+ TWNAMI GY
Sbjct: 245 WVGRQLHALIVKHGVESNIVVPTTKVYFYASNKDIISSRKVFDEMPRRSTVTWNAMITGY 304
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
S + K A NAL LF DML+DVSG+KPT TT+V VLS SQ+G+LE GAC+HG+ EK
Sbjct: 305 SSLKEGNKKYALNALYLFIDMLIDVSGIKPTATTIVSVLSAVSQIGMLETGACIHGFAEK 364
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
T PE+DVFIGT LVDMYSKCGCLD+AL +F RM +KN++TWTAM TG+AIHGKG +++
Sbjct: 365 TVCTPEDDVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNIMTWTAMTTGLAIHGKGKQSL 424
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+L M GVKPN TFTS +ACCH GLVEEGL LF MK +GV P I+HY CIVDL
Sbjct: 425 EVLYKMGAYGVKPNEATFTSFLSACCHGGLVEEGLQLFLEMKRTFGVMPQIQHYGCIVDL 484
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG LEEAY+FIM +PI PDA++WRSLL+ACN+HGDV +GEKVGK LLQL+ +
Sbjct: 485 LGRAGKLEEAYDFIMQMPINPDAVIWRSLLAACNIHGDVVMGEKVGKFLLQLEEWSS--A 542
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+ SED++ALSN+YA AE+W DVE+VR +MK K + + GSS +QT + L
Sbjct: 543 ESPKSEDYIALSNVYALAEKWDDVETVRIKMKAKSILNKAGSSAVQTVSMAVL 595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147796458|emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/451 (60%), Positives = 323/451 (71%), Gaps = 41/451 (9%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
HIKQ+HA LITNA+ SPPL A+LI YC + S + F H PNLFLFNTLI+
Sbjct: 27 HIKQLHAHLITNAVSSPPLLAKLIHHYC----AFSSPHYAYTFFIHLRSPNLFLFNTLIK 82
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
C PP S+LVFA WVS+ L FDDFTY+FALG+CAR SL W GRQIH + K+G
Sbjct: 83 CLPPSSSILVFADWVSREALVFDDFTYIFALGACARSPSL---WEGRQIHARILKQGVWS 139
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NVLV TT IHFYA+N D++ + VFD+M RSS TWNAMI GYCSQ K A +ALVL
Sbjct: 140 NVLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVL 199
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR MLVD GVKPTDTTMVCVLS +SQLG+LE G VHGY+EKT P NDVF+GT LVD
Sbjct: 200 FRAMLVDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVD 259
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
IHG+G EA+ LLD M GVKPNAVT
Sbjct: 260 ----------------------------------IHGRGKEALELLDEMVAYGVKPNAVT 285
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
FTSLF+ACCHAGLVEEGL LF +M+SK+GV P I+HY CIVDLLGRAGHL+EAY+F+ G+
Sbjct: 286 FTSLFSACCHAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGM 345
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++PDAILWRSLLSAC VH DV +GE+VGK+LLQLQP+ +F D+ SEDF+ALSN+YAS
Sbjct: 346 PVEPDAILWRSLLSACKVHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYAS 405
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT 473
AERW DVE+VR+ MKVK +ET+PG S +QT+
Sbjct: 406 AERWEDVETVREAMKVKGIETKPGCSSVQTS 436
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42564994|ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana] gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18970 gi|9280314|dbj|BAB01693.1| unnamed protein product [Arabidopsis thaliana] gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis thaliana] gi|332642654|gb|AEE76175.1| mitochondrial editing factor 20 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/470 (52%), Positives = 332/470 (70%), Gaps = 5/470 (1%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
PG R +LL+ + T KQIHAQL+ N L+ +LI YC+K ++ S+K+ H
Sbjct: 5 FPGPRFLSLLQQNS-KTLIQAKQIHAQLVINGCHDNSLFGKLIGHYCSKPSTESSSKLAH 63
Query: 64 F-VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCS 121
VF F P+ FLFNTL++C+ P+DS+ +FA + SK LL ++ T+VF LG+CAR S
Sbjct: 64 LLVFPRFGHPDKFLFNTLLKCSKPEDSIRIFANYASKSSLLYLNERTFVFVLGACARSAS 123
Query: 122 LSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L +GR +H V K GF++ + L+ TTL+HFYA N D+ +KVFD+MP R+S TWNA
Sbjct: 124 SSALRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNA 183
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GYCS K A A+VLFR SGV+PTDTTMVCVLS SQ GLLE G+ VH
Sbjct: 184 MIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVH 243
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+EK + PE DVFIGTALVDMYSKCGCL+NA +F M+ KNV TWT+MATG+A++G+
Sbjct: 244 GYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGR 303
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
GNE LL+ M + G+KPN +TFTSL +A H GLVEEG+ LF +MK+++GV P I+HY
Sbjct: 304 GNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYG 363
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVDLLG+AG ++EAY FI+ +PIKPDAIL RSL +AC+++G+ +GE++GK LL+++ E
Sbjct: 364 CIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIERE 423
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ ED+VALSN+ A +W +VE +RK+MK +R++T PG S +
Sbjct: 424 DEKLS-GSECEDYVALSNVLAHKGKWVEVEKLRKEMKERRIKTRPGYSFV 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834808|ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331126|gb|EFH61545.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 241/470 (51%), Positives = 327/470 (69%), Gaps = 6/470 (1%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
PG R +LL + T KQIHAQL+ N + L+ +LI YC+K S +S+K+ H
Sbjct: 5 FPGPRFLSLLYQNS-KTLIQAKQIHAQLVINGCQDNSLFGKLIGHYCSK-PSTESSKLAH 62
Query: 64 F-VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCS 121
VF F P+ FLFNTL++C+ P+DS+ +F W SK LL ++ T+VF LG+CAR S
Sbjct: 63 LLVFPRFGHPDKFLFNTLLKCSKPEDSIRIFTNWASKSSLLYLNERTFVFVLGACARSAS 122
Query: 122 LSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L +GR +H V K GF++ + L+ TTL+H YA N D+ +KVFD+MP R+S TWNA
Sbjct: 123 SSALRVGRIVHGMVKKLGFLYESELIGTTLLHCYAKNGDLRYARKVFDEMPERTSVTWNA 182
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GYCS K A A++LFR SGV+PTDTTMVCVL SQ GL+E G+ VH
Sbjct: 183 MIGGYCSHKDKGNHNARKAMILFRRFSCCGSGVRPTDTTMVCVLPAISQTGLIEIGSLVH 242
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+EK + PE DVFIGT LVDMYSKCGCL++A +F M+ KNV TWT+MATG+A+HG+
Sbjct: 243 GYIEKLGFTPEIDVFIGTGLVDMYSKCGCLNSAFSVFELMKVKNVFTWTSMATGLALHGR 302
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
GNE LLD M + G+KPN VTFTSL +A H GLV+EG+ LF +M++++GV P I+HY
Sbjct: 303 GNETPNLLDRMAESGIKPNEVTFTSLLSAYRHIGLVQEGIELFKSMRTRFGVTPVIQHYG 362
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVDLLG+AG ++EAY F++ +PIKPD IL RSL +AC+++G+ A+GE++GK LL+++ E
Sbjct: 363 CIVDLLGKAGRIQEAYEFVLAMPIKPDTILLRSLCNACSIYGETAMGEEIGKALLEIERE 422
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ ED+VALSN+ A +W +VE +R +MK +R++T PG S +
Sbjct: 423 EEKLS-GSECEDYVALSNMLAHKGKWIEVEKLRNEMKERRIKTRPGFSFV 471
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580953|ref|XP_002531295.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529128|gb|EEF31108.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 211/310 (68%), Positives = 251/310 (80%)
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
M RS TWNAMI G+ SQ +KAKD A AL+LFRDM+VDV KP D TMV VLS SSQ
Sbjct: 1 MSKRSVVTWNAMITGFSSQREKAKDSAVAALMLFRDMVVDVCAEKPNDITMVSVLSASSQ 60
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG+LE GAC+HGY+EKT +P+ND+FIGT LVDMYSKCGCLD+A+ F M+ KN LTWT
Sbjct: 61 LGVLECGACIHGYIEKTICVPQNDIFIGTGLVDMYSKCGCLDSAVKFFVEMKLKNKLTWT 120
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
AMATG+AIHGKG E + LLD M G+KPNAVTFTSLF+ACCH+GLVEEGLHLF NMK K
Sbjct: 121 AMATGLAIHGKGKETLELLDGMGASGIKPNAVTFTSLFSACCHSGLVEEGLHLFHNMKGK 180
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G+EP I+HY CIVDLLG+ GHL+EAY FI G+P++PDAILWR LLSAC VHGDV +GEK
Sbjct: 181 FGIEPGIQHYGCIVDLLGKGGHLKEAYEFIAGMPMEPDAILWRCLLSACKVHGDVVMGEK 240
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
V KILL LQPE V+ +SED+VALSN+YASAERW DVE +RK+MKVKR+ET+PG+S+
Sbjct: 241 VAKILLHLQPEKNSVESDDSSEDYVALSNVYASAERWEDVEILRKEMKVKRLETKPGASL 300
Query: 470 LQTTTHYTLD 479
+Q + L+
Sbjct: 301 VQAIGNRLLE 310
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435742|ref|XP_004135653.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like [Cucumis sativus] gi|449522917|ref|XP_004168472.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 245/313 (78%), Gaps = 4/313 (1%)
Query: 170 MPMRSSATWNAMINGYCSQSKK-AKDCAFNALVLFRDMLVDVSG--VKPTDTTMVCVLSV 226
M +R+S TWNAMI GYCSQ K ++ A +AL LFR MLV+ + VKPTDTTMVC+LS
Sbjct: 1 MSLRNSVTWNAMIAGYCSQGGKVSQKYARDALELFRGMLVESTNFEVKPTDTTMVCILSA 60
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+SQLG+LE G+CVH Y++KT PE DVFIGT LV+MYSKCG L++A +F +M++KNVL
Sbjct: 61 ASQLGMLETGSCVHAYIKKTVDSPEKDVFIGTGLVNMYSKCGLLNSASSVFKQMKQKNVL 120
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
TWT+MATG+A+HG+G EA+ LLD+M GVKPNAVTFTSL +ACCH GL+EEGLHLF M
Sbjct: 121 TWTSMATGLAVHGRGKEALELLDAMGAHGVKPNAVTFTSLLSACCHGGLIEEGLHLFRVM 180
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ K+GV P ++HY CIVDLLGR+GHL EAY I+ +P++PD +LWRSLLS+C +HGDV +
Sbjct: 181 ERKFGVVPQMQHYGCIVDLLGRSGHLREAYKLILEMPMEPDGVLWRSLLSSCMLHGDVEM 240
Query: 407 GEKVGKILLQLQPEVTFVDVACT-SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
GE+VGK+L++ Q +F D C SEDFVALSN+YAS ERW DVE++R +MK+K +E +
Sbjct: 241 GERVGKLLVERQGGESFDDEWCVGSEDFVALSNVYASVERWDDVEALRDEMKIKGIENKA 300
Query: 466 GSSILQTTTHYTL 478
G S LQTT L
Sbjct: 301 GCSSLQTTGSQGL 313
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/498 (35%), Positives = 276/498 (55%), Gaps = 61/498 (12%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF---VFTH 68
L L+ + +H+K IHA +I + A + +C +S T ++ + +F+
Sbjct: 21 LFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSS--GTSLIDYASRIFSQ 78
Query: 69 FDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
PNLF+FN +IR P + + +GLL D+ T+ F + SC + +S
Sbjct: 79 IQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLP-DNLTFPFLVKSCTKLHCIS- 136
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---------------------------- 156
+G Q H H+ K GF +V V +L+H YA+
Sbjct: 137 --MGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRG 194
Query: 157 -NK--DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
NK D+ S +K+FDQMP ++ TW+ MI+GY + K A+ LF+ ++ GV
Sbjct: 195 FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDK-----AVELFK--VLQSQGV 247
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+ +T MV V+S + LG LE G H Y+ K ++ +GTALVDMY++CG +D A
Sbjct: 248 RANETVMVSVISSCAHLGALELGERAHDYVVKNGMTL--NLILGTALVDMYARCGSIDKA 305
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ +F + E++ L+WTA+ G+A+HG +++ +M + G+ P +TFT++ +AC H
Sbjct: 306 VWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHG 365
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
GLVE G +F++MK VEP ++HY C+VDLLGRAG LEEA F++ +P+KP+A +W +
Sbjct: 366 GLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGA 425
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL AC +H + +GE+VGKIL+QL P+ S +V LSNIYA+A+ W V +R
Sbjct: 426 LLGACRIHKNAEIGERVGKILIQLLPQ--------HSGYYVLLSNIYANAKEWEKVTEMR 477
Query: 454 KQMKVKRVETEPGSSILQ 471
+ MK K ++ PG S+++
Sbjct: 478 QMMKAKGLKKPPGHSLIE 495
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Vitis vinifera] gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 181/464 (39%), Positives = 253/464 (54%), Gaps = 25/464 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L T+ +KQ+ A I L S +C+ + S + H +F P++
Sbjct: 27 LPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDI 86
Query: 75 FLFNTLIRCTPPQDSVL----VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
LFNT+ R D+ L +F + GL DD+T+ L +CA S L GRQ
Sbjct: 87 VLFNTMARGYARTDTPLRAFTLFTQILFSGLFP-DDYTFPSLLKACA---SCKALEEGRQ 142
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H K G NV V TLI+ Y + ++ ++VFD++ T+NAMI GY S+
Sbjct: 143 LHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSR 202
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ AL LFR++ +KPTD TM+ VLS + LG L+ G +H Y++K +
Sbjct: 203 PNE-----ALSLFREL--QARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGF-- 253
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
V + TAL+DMY+KCG LD+A+ +F M ++ W+AM AIHG G +A+ L
Sbjct: 254 NRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKE 313
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
MR G +P+ +TF L AC H GLVEEG F M+ K+GV P IKHY C+VDLLGRAG
Sbjct: 314 MRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAG 373
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
LEEAY FI+G+PI+P ILWR+LLSAC HG+V LG++V + + +L
Sbjct: 374 RLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDS--------HG 425
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
D++ LSN+ A A RW DV VRK M + V PG S ++
Sbjct: 426 GDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNN 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| TAIR|locus:2085874 | 472 | MEF20 "AT3G18970" [Arabidopsis | 0.962 | 0.983 | 0.526 | 1.9e-129 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.653 | 0.506 | 0.390 | 5.2e-79 | |
| TAIR|locus:2195296 | 484 | AT1G09190 "AT1G09190" [Arabido | 0.647 | 0.644 | 0.379 | 1.4e-74 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.933 | 0.756 | 0.354 | 5.1e-74 | |
| TAIR|locus:2079187 | 591 | AT3G47530 "AT3G47530" [Arabido | 0.923 | 0.752 | 0.356 | 4.3e-70 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.908 | 0.726 | 0.355 | 3e-69 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.925 | 0.699 | 0.348 | 5.1e-67 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.923 | 0.677 | 0.324 | 2.8e-66 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.634 | 0.534 | 0.378 | 6.1e-66 | |
| TAIR|locus:2040565 | 501 | AT2G36730 [Arabidopsis thalian | 0.906 | 0.872 | 0.351 | 7.4e-66 |
| TAIR|locus:2085874 MEF20 "AT3G18970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
Identities = 247/469 (52%), Positives = 332/469 (70%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF 64
PG R +LL+ + T KQIHAQL+ N L+ +LI YC+K ++ S+K+ H
Sbjct: 6 PGPRFLSLLQQNSKTL-IQAKQIHAQLVINGCHDNSLFGKLIGHYCSKPSTESSSKLAHL 64
Query: 65 -VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCSL 122
VF F P+ FLFNTL++C+ P+DS+ +FA + SK LL ++ T+VF LG+CAR S
Sbjct: 65 LVFPRFGHPDKFLFNTLLKCSKPEDSIRIFANYASKSSLLYLNERTFVFVLGACARSASS 124
Query: 123 STLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
S L +GR +H V K GF++ + L+ TTL+HFYA N D+ +KVFD+MP R+S TWNAM
Sbjct: 125 SALRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAM 184
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I GYCS K A A+VLFR SGV+PTDTTMVCVLS SQ GLLE G+ VHG
Sbjct: 185 IGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVHG 244
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
Y+EK + PE DVFIGTALVDMYSKCGCL+NA +F M+ KNV TWT+MATG+A++G+G
Sbjct: 245 YIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRG 304
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
NE LL+ M + G+KPN +TFTSL +A H GLVEEG+ LF +MK+++GV P I+HY C
Sbjct: 305 NETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGC 364
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
IVDLLG+AG ++EAY FI+ +PIKPDAIL RSL +AC+++G+ +GE++GK LL+++ E
Sbjct: 365 IVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIERED 424
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ ED+VALSN+ A +W +VE +RK+MK +R++T PG S +
Sbjct: 425 EKLS-GSECEDYVALSNVLAHKGKWVEVEKLRKEMKERRIKTRPGYSFV 472
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 130/333 (39%), Positives = 207/333 (62%)
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF +V+ T+++ Y + + +++FD+MP R+ TW+ MINGY + C
Sbjct: 179 GFR-DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNN-----CFEK 232
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ LF M + GV +T MV V+S + LG LEFG + Y+ K+ +M N + +GT
Sbjct: 233 AIDLFEFMKRE--GVVANETVMVSVISSCAHLGALEFGERAYEYVVKS-HMTVN-LILGT 288
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
ALVDM+ +CG ++ A+ +F + E + L+W+++ G+A+HG ++A+ M G P
Sbjct: 289 ALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIP 348
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
VTFT++ +AC H GLVE+GL +++NMK G+EP ++HY CIVD+LGRAG L EA NF
Sbjct: 349 RDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENF 408
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I+ + +KP+A + +LL AC ++ + + E+VG +L++++PE S +V LSN
Sbjct: 409 ILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPE--------HSGYYVLLSN 460
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
IYA A +W +ES+R MK K V+ PG S+++
Sbjct: 461 IYACAGQWDKIESLRDMMKEKLVKKPPGWSLIE 493
|
|
| TAIR|locus:2195296 AT1G09190 "AT1G09190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 125/329 (37%), Positives = 186/329 (56%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+V +I + + D+ G +F QM RS +WN+MI+ S SK +D AL L
Sbjct: 167 NVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMIS---SLSKCGRDR--EALEL 221
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M +D G P + T+V VL +S+ LG+L+ G +H E + ++ + +G ALVD
Sbjct: 222 FCEM-ID-QGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLF-KDFITVGNALVD 278
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAV 321
Y K G L+ A IF +M+ +NV++W + +G A++GKG I L D+M + G V PN
Sbjct: 279 FYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEA 338
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + A C + G VE G LF M ++ +E +HY +VDL+ R+G + EA+ F+
Sbjct: 339 TFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKN 398
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+P+ +A +W SLLSAC HGDV L E L++++P S ++V LSN+YA
Sbjct: 399 MPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPG--------NSGNYVLLSNLYA 450
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSIL 470
RW DVE VR MK R+ G S +
Sbjct: 451 EEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 170/480 (35%), Positives = 271/480 (56%)
Query: 1 MLSLPG-HRCFALLKLKAITTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQ 57
+L LP +C LL+ +++ + ++QIHA I + ++ L LI Y SP
Sbjct: 9 VLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLI-FYLVSLPSPP 67
Query: 58 STKIVHFVFTHFDPP-NLFLFNTLIR-CTPPQDSVLVFAYWVS---KGLLTFDDFTYVFA 112
H VF+ + P N+F++NTLIR +S+ F+ + GL+ D TY F
Sbjct: 68 PMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFL 127
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
+ + +++ + LG IH V + GF + V +L+H YA+ D++S KVFD+MP
Sbjct: 128 IKAVT---TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE 184
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
+ WN++ING+ K + AL L+ +M + G+KP T+V +LS +++G
Sbjct: 185 KDLVAWNSVINGFAENGKPEE-----ALALYTEM--NSKGIKPDGFTIVSLLSACAKIGA 237
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L G VH YM K + N + L+D+Y++CG ++ A +F M +KN ++WT++
Sbjct: 238 LTLGKRVHVYMIKVG-LTRN-LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295
Query: 293 TGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G+A++G G EAI L M G+ P +TF + AC H G+V+EG F M+ ++
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+EP I+H+ C+VDLL RAG +++AY +I +P++P+ ++WR+LL AC VHGD L E
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+LQL+P S D+V LSN+YAS +RW DV+ +RKQM V+ PG S+++
Sbjct: 416 IQILQLEPN--------HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVE 467
|
|
| TAIR|locus:2079187 AT3G47530 "AT3G47530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 169/474 (35%), Positives = 261/474 (55%)
Query: 12 LLKLKAITTPS-HIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
LL L +T H++QIHA L+ T+ +++ ++ + P+ VF+
Sbjct: 14 LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLI-PRDINYSCRVFSQR 72
Query: 70 DPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
P L NT+IR P + +F L + + FAL C + L
Sbjct: 73 LNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLG- 131
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
G QIH + GF+ + L+ TTL+ Y++ ++ + KVFD++P R + +WN + + Y
Sbjct: 132 --GLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCY 189
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
++K+ +D LVLF M DV G VKP T + L + LG L+FG VH +++
Sbjct: 190 L-RNKRTRD----VLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFID 244
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ + + LV MYS+CG +D A +F MRE+NV++WTA+ +G+A++G G EA
Sbjct: 245 ENGL--SGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEA 302
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS-KWGVEPHIKHYSCIV 363
I + M G+ P T T L +AC H+GLV EG+ FD M+S ++ ++P++ HY C+V
Sbjct: 303 IEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVV 362
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLLGRA L++AY+ I + +KPD+ +WR+LL AC VHGDV LGE+V L++L+ E
Sbjct: 363 DLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAE--- 419
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
+ D+V L N Y++ +W V +R MK KR+ T+PG S LQ T H
Sbjct: 420 -----EAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVH 468
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 165/464 (35%), Positives = 254/464 (54%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
+L + + + QI A I + ++ A+LI +CT+ + S +F
Sbjct: 33 ILLISKCNSLRELMQIQAYAIKSHIEDVSFVAKLIN-FCTESPTESSMSYARHLFEAMSE 91
Query: 72 PNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
P++ +FN++ R T P + +F + G+L D++T+ L +CA +L
Sbjct: 92 PDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILP-DNYTFPSLLKACAVAKALEE--- 147
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GRQ+H K G NV V TLI+ Y +D+ S + VFD++ +NAMI GY
Sbjct: 148 GRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYAR 207
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+++ + AL LFR+M +KP + T++ VLS + LG L+ G +H Y +K
Sbjct: 208 RNRPNE-----ALSLFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 260
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ V + TAL+DM++KCG LD+A+ IF +MR K+ W+AM A HGK +++ +
Sbjct: 261 FCKY--VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLM 318
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ MR V+P+ +TF L AC H G VEEG F M SK+G+ P IKHY +VDLL
Sbjct: 319 FERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLS 378
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG+LE+AY FI +PI P +LWR LL+AC+ H ++ L EKV + + +L
Sbjct: 379 RAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDS------- 431
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V LSN+YA ++W V+S+RK MK ++ PG S ++
Sbjct: 432 -HGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIE 474
|
|
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 166/477 (34%), Positives = 252/477 (52%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVH 63
R F+L + + S +KQ+HA + P LY +++QL +S
Sbjct: 50 RIFSLAE--TCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQL----SSSFSDVNYAF 103
Query: 64 FVFTHFDPPNLFLFNTLIR-C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
VF + + F++NTLIR C + +++ +++ + +G + D T+ F L +CA
Sbjct: 104 RVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAY 163
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
S G+Q+H + K GF +V V LIH Y S + +KVFD+MP RS +W
Sbjct: 164 IFGFSE---GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSW 220
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N+MI+ + D +AL LFR+M +P TM VLS + LG L G
Sbjct: 221 NSMIDALVRFGEY--D---SALQLFREMQ---RSFEPDGYTMQSVLSACAGLGSLSLGTW 272
Query: 239 VHGYM-EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
H ++ K DV + +L++MY KCG L A +F M+++++ +W AM G A
Sbjct: 273 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 332
Query: 298 HGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
HG+ EA+ D M D V+PN+VTF L AC H G V +G FD M + +EP
Sbjct: 333 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 392
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG-DVALGEKVGKIL 414
++HY CIVDL+ RAG++ EA + +M +P+KPDA++WRSLL AC G V L E++ + +
Sbjct: 393 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 452
Query: 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ + + + C+ +V LS +YASA RW DV VRK M + EPG S ++
Sbjct: 453 IGTKEDNESSNGNCSGA-YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIE 508
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 153/471 (32%), Positives = 252/471 (53%)
Query: 3 SLPGHRCFALLKLKA--ITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQST 59
S P + + LL L ++ S ++H ++ N P A +LI +Y + +
Sbjct: 73 SSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYAR 132
Query: 60 KIVHFVFTHFDPPNLFLFNTLIRCTP--PQDSVLVFAYWVSKGL-LTFDDFTYVFALGSC 116
K VF ++++N L R ++ YW + + D FTY + L +C
Sbjct: 133 K----VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188
Query: 117 -ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
A C+++ L G++IH H+T+RG+ +V + TTL+ YA + VF MP+R+
Sbjct: 189 VASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNV 248
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+W+AMI Y K AF AL FR+M+ + P TMV VL + L LE
Sbjct: 249 VSWSAMIACYAKNGK-----AFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ 303
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +HGY+ + ++ + + +ALV MY +CG L+ +F RM +++V++W ++ +
Sbjct: 304 GKLIHGYILRRGL--DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSY 361
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG G +AI++ + M G P VTF S+ AC H GLVEEG LF+ M G++P
Sbjct: 362 GVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQ 421
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+HY+C+VDLLGRA L+EA + + +P +W SLL +C +HG+V L E+ + L
Sbjct: 422 IEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF 481
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
L+P+ + ++V L++IYA A+ W +V+ V+K ++ + ++ PG
Sbjct: 482 ALEPK--------NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 125/330 (37%), Positives = 196/330 (59%)
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDM 206
++++ YA I +K+FD+MP R+ +W+ +INGY C + K+A D LFR+M
Sbjct: 133 SVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALD-------LFREM 185
Query: 207 LV---DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
+ + + V+P + TM VLS +LG LE G VH Y++K Y E D+ +GTAL+DM
Sbjct: 186 QLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDK--YHVEIDIVLGTALIDM 243
Query: 264 YSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPNAV 321
Y+KCG L+ A +F+ + +K+V ++AM +A++G +E +L M + PN+V
Sbjct: 244 YAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSV 303
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + AC H GL+ EG F M ++G+ P I+HY C+VDL GR+G ++EA +FI
Sbjct: 304 TFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIAS 363
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+P++PD ++W SLLS + GD+ E K L++L P S +V LSN+YA
Sbjct: 364 MPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDP--------MNSGAYVLLSNVYA 415
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQ 471
RW +V+ +R +M+VK + PG S ++
Sbjct: 416 KTGRWMEVKCIRHEMEVKGINKVPGCSYVE 445
|
|
| TAIR|locus:2040565 AT2G36730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 167/475 (35%), Positives = 256/475 (53%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFV 65
H+C LKL ++ H+ QIH Q+ ++L++ + ++L+++ A + +
Sbjct: 14 HQCLIFLKL--CSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLA--KDLAFARTL 69
Query: 66 FTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
H +N L R P +S+ V++ +G+ + T+ F L +CA F
Sbjct: 70 LLHSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKP-NKLTFPFLLKACASFLG 128
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L+ GRQI V V K GF F+V V LIH Y + K S +KVFD+M R+ +WN++
Sbjct: 129 LTA---GRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSI 185
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
+ K + F F +M+ P +TTMV +LS G L G VH
Sbjct: 186 MTALVENGKL--NLVFEC---FCEMIG--KRFCPDETTMVVLLSACG--GNLSLGKLVHS 236
Query: 242 Y-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
M + E + +GTALVDMY+K G L+ A L+F RM +KNV TW+AM G+A +G
Sbjct: 237 QVMVREL---ELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGF 293
Query: 301 GNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
EA++L M ++ V+PN VTF + AC H GLV++G F M+ ++P + HY
Sbjct: 294 AEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHY 353
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH---GDVALGEKVGKILLQ 416
+VD+LGRAG L EAY+FI +P +PDA++WR+LLSAC++H D +GEKV K L++
Sbjct: 354 GAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIE 413
Query: 417 LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L+P+ S + V ++N +A A W + VR+ MK +++ G S L+
Sbjct: 414 LEPK--------RSGNLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLE 460
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LJ69 | PP243_ARATH | No assigned EC number | 0.5255 | 0.9647 | 0.9851 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 482 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-82 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-67 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-38 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 1e-82
Identities = 143/449 (31%), Positives = 233/449 (51%), Gaps = 32/449 (7%)
Query: 25 KQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+++H ++ + LIQ+Y S S VF+ + + + +I
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMY----LSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 84 TP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P ++ +A + D+ T L +CA L L +G ++H ++G
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACA---CLGDLDVGVKLHELAERKG 419
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ V+VA LI Y+ K I +VF +P + +W ++I G ++ F A
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR-----CFEA 474
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L+ FR ML+ + KP T++ LS +++G L G +H ++ +T + F+ A
Sbjct: 475 LIFFRQMLLTL---KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG--FLPNA 529
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+D+Y +CG ++ A F+ EK+V++W + TG HGKG+ A+ L + M + GV P+
Sbjct: 530 LLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF SL AC +G+V +GL F +M+ K+ + P++KHY+C+VDLLGRAG L EAYNFI
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+PI PD +W +LL+AC +H V LGE + + +L P V ++ L N+
Sbjct: 649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN----SVGY----YILLCNL 700
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSS 468
YA A +W +V VRK M+ + +PG S
Sbjct: 701 YADAGKWDEVARVRKTMRENGLTVDPGCS 729
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 1e-67
Identities = 119/361 (32%), Positives = 191/361 (52%), Gaps = 20/361 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+V L + A L + G+Q+H V K G + + V+ LI Y+ DI + VF
Sbjct: 226 TFVVMLRASA---GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D MP +++ WN+M+ GY + AL L+ +M SGV T ++ +
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHG-----YSEEALCLYYEMRD--SGVSIDQFTFSIMIRIF 335
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
S+L LLE H + +T + D+ TALVD+YSK G +++A +F RM KN+++
Sbjct: 336 SRLALLEHAKQAHAGLIRTGF--PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS 393
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W A+ G HG+G +A+ + + M GV PN VTF ++ +AC ++GL E+G +F +M
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
++P HY+C+++LLGR G L+EAY I P KP +W +LL+AC +H ++ LG
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
+ L + PE ++V L N+Y S+ R + V + +K K + P
Sbjct: 514 RLAAEKLYGMGPE--------KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
Query: 468 S 468
+
Sbjct: 566 T 566
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 9e-38
Identities = 87/292 (29%), Positives = 142/292 (48%), Gaps = 14/292 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D +T+ L +C + L GR++H HV + GF +V V LI Y D+ S +
Sbjct: 186 DVYTFPCVLRTCG---GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VFD+MP R +WNAMI+GY L LF M V P T+ V+
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFEN-----GECLEGLELFFTMREL--SVDPDLMTITSVI 295
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S LG G +HGY+ KT + DV + +L+ MY G A +FSRM K+
Sbjct: 296 SACELLGDERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++WTAM +G +G ++A+ M V P+ +T S+ +AC G ++ G+ L +
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
+ + G+ ++ + ++++ + +++A IP K D I W S+++
Sbjct: 414 -LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIA 463
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-32
Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 47/346 (13%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY + +C L ++ + ++ HV GF + + ++ + + +++F
Sbjct: 125 TYDALVEACIA---LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D+MP R+ A+W +I G A LFR+M D S +P T V +L S
Sbjct: 182 DEMPERNLASWGTIIGGLVDAGN-----YREAFALFREMWEDGSDAEP--RTFVVMLRAS 234
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LG G +H + KT + D F+ AL+DMYSKCG +++A +F M EK +
Sbjct: 235 AGLGSARAGQQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-----------CHAGLV 336
W +M G A+HG EA+ L MRD GV + TF+ + HAGL+
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
G L I + +VDL + G +E+A N +P K + I W +L++
Sbjct: 353 RTGFPL------------DIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIA 399
Query: 397 ACNVHGDVALGEKVGKILLQLQPE------VTFVDV--ACTSEDFV 434
HG G K ++ ++ E VTF+ V AC
Sbjct: 400 GYGNHG---RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-23
Identities = 75/278 (26%), Positives = 128/278 (46%), Gaps = 17/278 (6%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G ++ V + ++ + ++ VF +MP R +WN ++ GY
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY-- 162
Query: 188 QSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
AK F+ AL L+ ML +GV+P T CVL + L G VH ++ +
Sbjct: 163 ----AKAGYFDEALCLYHRML--WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ E DV + AL+ MY KCG + +A L+F RM ++ ++W AM +G +G+ E +
Sbjct: 217 GF--ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVD 364
L +MR+ V P+ +T TS+ +AC G G +H + K G + + ++
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY---VVKTGFAVDVSVCNSLIQ 331
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G EA + K DA+ W +++S +G
Sbjct: 332 MYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 6e-13
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 19/242 (7%)
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
+NA+I+ C QS A D AF+ L +M + + P T+ ++ + G ++
Sbjct: 545 FNALISA-CGQSG-AVDRAFDVLA---EMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV----LTWTAM-- 291
V+ + + +V+ T V+ S+ G D AL I+ M++K V + ++A+
Sbjct: 600 EVYQMIHEYNIKGTPEVY--TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G A G ++A +L R G+K V+++SL AC +A ++ L L++++KS
Sbjct: 658 VAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-K 714
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP---IKPDAILWRSLLSACNVHGDVALGE 408
+ P + + ++ L L +A + + + P+ I + LL A D +G
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 409 KV 410
+
Sbjct: 775 DL 776
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 74/324 (22%), Positives = 129/324 (39%), Gaps = 59/324 (18%)
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
S+ N+ + CS + + AL L M V + V + + +
Sbjct: 50 STHDSNSQLRALCSHGQLEQ-----ALKLLESM--QELRVPVDEDAYVALFRLCEWKRAV 102
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
E G+ V + P V +G A++ M+ + G L +A +F +M E+++ +W +
Sbjct: 103 EEGSRVCSRALSS--HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-----------CHAGLVEEG--- 339
G A G +EA+ L M GV+P+ TF + C HA +V G
Sbjct: 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220
Query: 340 ----LHLFDNMKSKWGVEPHIKHYSCIVDLLGR----------AGHLE--------EAYN 377
++ M K G + + D + R +G+ E E +
Sbjct: 221 DVDVVNALITMYVKCG---DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF 277
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF-VDVA-CTSEDFVA 435
+ + + PD + S++SAC + GD LG ++ +++ F VDV+ C S
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK----TGFAVDVSVCNS----- 328
Query: 436 LSNIYASAERWPDVESVRKQMKVK 459
L +Y S W + E V +M+ K
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETK 352
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 3e-11
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
+V+T+ + G GK EA++L + M+ G+KPN T++ L C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A+R+L +++ G+K + +T+L + C +G V+ +F M + GVE ++ + ++
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALI 514
Query: 364 DLLGRAGHLEE---AYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
D RAG + + AY + +KPD +++ +L+SAC G V
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-08
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
P+ VT+ +L C G VEE L LF+ MK K G++P++ YS ++D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 16/185 (8%)
Query: 258 TALVDMYSKCGCLDNALLIFSRMR----EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
T L+ +K G +D +F M E NV T+ A+ G A G+ +A MR
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG-VEP-HIKHYSCIVDLLGRAGH 371
VKP+ V F +L +AC +G V+ + MK++ ++P HI ++ AG
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT-VGALMKACANAGQ 594
Query: 372 LE---EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ--LQPEVTF--- 423
++ E Y I IK ++ +++C+ GD + + + ++P+ F
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 424 -VDVA 427
VDVA
Sbjct: 655 LVDVA 659
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
G+KP+ VT+ +L C AG V+E + L D M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 42/194 (21%)
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
+K T ++ SQ G +F ++ M+K P+ +VF +ALVD+ G L
Sbjct: 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFF-SALVDVAGHAGDL 665
Query: 271 DNALLIFSRMREK---------------------------------------NVLTWTAM 291
D A I R++ V T A+
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
T + + +A+ +L M+ G+ PN +T++ L A + GL L K G
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-G 784
Query: 352 VEPHIKHYSCIVDL 365
++P++ CI L
Sbjct: 785 IKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
+T + + A GK + + M + GV+ N TF +L C AG V + + M+
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI--MGI---PIKPDAILWRSLLSACNVHG 402
SK V+P ++ ++ G++G ++ A++ + M PI PD I +L+ AC G
Sbjct: 535 SK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 403 DVALGEKVGKIL 414
V ++V +++
Sbjct: 594 QVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMR----SSATWNAMINGYC 186
+V+ TLI Y + K+F++M R + T++ +I+G C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
VT+ SL + C AG +EE L LF MK K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
VT+ +L C AG VEE L LF MK + G+EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKER-GIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
T+ + G+ G+ EA+ L M++ G++P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
T+N +I+GYC + K + AL LF +M G+KP T
Sbjct: 5 TYNTLIDGYCKKGKVEE-----ALKLFNEMK--KRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.6 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.21 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.21 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.13 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.12 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.09 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.0 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.98 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.95 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.88 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.65 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.64 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.58 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.47 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.44 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.27 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.25 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.05 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.04 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.85 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.83 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.79 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.69 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.65 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.64 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.55 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.54 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.5 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.48 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.47 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.46 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.42 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.37 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.37 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.36 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.3 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.27 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.27 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.25 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.22 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.2 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.17 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.13 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.02 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.0 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.98 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.92 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.91 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.87 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.86 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.63 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.55 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.53 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.45 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.4 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.33 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.12 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.89 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.87 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.84 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.83 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.67 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.66 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.54 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.39 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.33 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.29 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.15 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.15 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.01 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.01 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.94 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.82 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.75 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.72 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.59 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.41 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.38 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.18 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.12 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.09 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.07 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.95 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.9 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.41 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.23 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.11 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.98 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.96 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.82 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.77 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.69 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.54 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.23 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.64 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.64 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.32 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.32 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.9 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.74 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.54 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.44 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.37 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.25 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.23 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.01 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.88 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.78 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.44 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.38 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.28 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.05 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 88.29 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.28 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.12 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.67 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.58 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.4 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.83 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.8 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 86.48 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.47 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.03 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.86 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.99 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.86 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 84.16 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 84.15 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.08 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.01 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.52 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.13 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.82 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.73 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.64 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 82.51 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.23 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.24 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.14 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.46 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.25 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 80.21 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-71 Score=559.54 Aligned_cols=450 Identities=29% Similarity=0.498 Sum_probs=439.3
Q ss_pred CCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHh
Q 011587 4 LPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81 (482)
Q Consensus 4 ~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll 81 (482)
.||..||+.++.+|+ ++++.+.++|..|.+.|+.|+..+++.++..|+++ |+++.|.++|+.|..||..+||.+|
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC---GMLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC---CCHHHHHHHHhcCCCCCeeeHHHHH
Confidence 589999999999997 78889999999999999999999999999999999 9999999999999999999999999
Q ss_pred cC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 011587 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157 (482)
Q Consensus 82 ~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (482)
.+ |++++|+++|++|.+.|+.| +..||+.++.+|++.+ . .+.+.+++..+.+.|+.||..+|++|+++|++.
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~~-~--~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRASAGLG-S--ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHhcCC-c--HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 98 99999999999999999999 9999999999999999 8 999999999999999999999999999999999
Q ss_pred CChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHH
Q 011587 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237 (482)
Q Consensus 158 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 237 (482)
|++++|.++|++|.++|+.+||++|.+|++ .|++++|+++|++|. ..|+.||..||++++.+|++.|++++|.
T Consensus 273 g~~~~A~~vf~~m~~~~~vt~n~li~~y~~-----~g~~~eA~~lf~~M~--~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYAL-----HGYSEEALCLYYEMR--DSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred CCHHHHHHHHHhCCCCChhHHHHHHHHHHh-----CCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999999999999999999 999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 011587 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317 (482)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 317 (482)
+++..|.+.|+ +++..++++|+++|++.|++++|.++|++|.++|..+||.||.+|++.|+.++|.++|++|.+.|+.
T Consensus 346 ~i~~~m~~~g~--~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 346 QAHAGLIRTGF--PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHHhCC--CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999 6699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 397 (482)
||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|++.|+..+|++|+.+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999876799999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeCCeee
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYT 477 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 477 (482)
|...|+++.|..+++++.+.+| .+..+|..|+++|++.|+|++|.+++++|++.|+.+.|+++|+.+++..+
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p--------~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGP--------EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCC--------CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence 9999999999999999999888 67889999999999999999999999999999999999999999987644
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-68 Score=548.40 Aligned_cols=449 Identities=31% Similarity=0.580 Sum_probs=437.0
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHH
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 80 (482)
..||..||+.++.+|+ |+.+.+.++|..+.+.|+.|+..+++.|+..|+++ |++++|.++|+.|..||..+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~---g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL---GSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc---CCHHHHHHHHhhCCCCCeeeHHHH
Confidence 4699999999999998 88999999999999999999999999999999999 999999999999999999999999
Q ss_pred hcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 011587 81 IRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156 (482)
Q Consensus 81 l~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (482)
|.+ |++++|+++|++|.+.|+.| |..||++++.+|++.+ + ++.|.++++.+.+.|+.|+..+|+.|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~P-d~~t~~~ll~a~~~~g-~--~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACACLG-D--LDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCC-CceeHHHHHHHHhccc-h--HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 999 99999999999999999999 9999999999999999 9 99999999999999999999999999999999
Q ss_pred CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.|++++|.++|++|.++|..+||++|.+|++ .|+.++|+.+|++|. . +++||..||+.++.+|++.|.++.+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~-----~g~~~eA~~lf~~m~--~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRL-----NNRCFEALIFFRQML--L-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH-----CCCHHHHHHHHHHHH--h-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 9999999999999999999999999999999 999999999999996 4 6999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.+++..+.+.|+ .++..++++|+++|++.|++++|.++|+.+ .+|..+||+||.+|++.|+.++|.++|++|.+.|+
T Consensus 509 ~~i~~~~~~~g~--~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 509 KEIHAHVLRTGI--GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHHHhCC--CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999 669999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 396 (482)
.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999996579999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeCCee
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 476 (482)
+|...|+.+.++...+++.+..| .+...|..|.+.|.+.|+|++|.++.+.|++.|+.++|+++|+.+++..
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p--------~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~ 737 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDP--------NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCC--------CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEE
Confidence 99999999999999999999999 7899999999999999999999999999999999999999999999875
Q ss_pred e
Q 011587 477 T 477 (482)
Q Consensus 477 ~ 477 (482)
+
T Consensus 738 ~ 738 (857)
T PLN03077 738 H 738 (857)
T ss_pred E
Confidence 4
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=528.99 Aligned_cols=443 Identities=22% Similarity=0.333 Sum_probs=418.7
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHH
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 80 (482)
..||..||+.++++|+ +++..+.++|..+.+.|+.|+..+++.|+.+|+++ |+++.|.++|+.|+.||..+||++
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~d~~s~n~l 259 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMPRRDCISWNAM 259 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCCCCCcchhHHH
Confidence 4689999999999986 67788899999999999999999999999999999 999999999999999999999999
Q ss_pred hcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 011587 81 IRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156 (482)
Q Consensus 81 l~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (482)
|.+ |++++|+++|.+|.+.|+.| |..||+.++.+|++.+ + ++.+.+++..+.+.|+.||..+|+.|+.+|++
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g-~--~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDP-DLMTITSVISACELLG-D--ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcC-C--hHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 998 99999999999999999999 9999999999999999 9 99999999999999999999999999999999
Q ss_pred CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.|++++|.++|++|..||..+||++|.+|++ .|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~-----~g~~~~A~~lf~~M~--~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEK-----NGLPDKALETYALME--QDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh-----CCCHHHHHHHHHHHH--HhCCCCCceeHHHHHHHHhccchHHHH
Confidence 9999999999999999999999999999999 999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.++++.+.+.|+ .++..++++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|..+|++|.. ++
T Consensus 409 ~~l~~~~~~~g~--~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 409 VKLHELAERKGL--ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 999999999999 669999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 396 (482)
.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|+++|.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~ 562 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLT 562 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHH
Confidence 999999999999999999999999999999994 99999999999999999999999999999988 789999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH-hcCCccCCcccEEEe
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK-VKRVETEPGSSILQT 472 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~~~ 472 (482)
+|++.|+.++|.++|++|.+.|. .||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..++..++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~-------~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGV-------NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-------CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999998887 4899999999999999999999999999998 678888776554333
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=508.21 Aligned_cols=450 Identities=16% Similarity=0.177 Sum_probs=421.9
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcC-CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHH
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 79 (482)
++++...|..++.+++ |++++|.++++.|.+.|+ +++..+++.++..|.+. |.+++|..+|+.|..||..+||.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~---g~~~eAl~lf~~M~~pd~~Tyn~ 442 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ---RAVKEAFRFAKLIRNPTLSTFNM 442 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCCHHHHHH
Confidence 3567778888888887 899999999999999995 57788889999999999 99999999999999999999999
Q ss_pred HhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 011587 80 LIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155 (482)
Q Consensus 80 ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (482)
+|.+ |+++.|.++|+.|.+.|+.| |..+|+++|.+|++.| + ++.|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G-~--vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSG-K--VDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCc-C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9998 99999999999999999999 9999999999999999 9 9999999999999999999999999999999
Q ss_pred hCCChhHHHHHhccCC----CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC
Q 011587 156 SNKDISSGKKVFDQMP----MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 156 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~ 231 (482)
+.|++++|.++|++|. .||..+||.+|.+|++ .|++++|.++|++|.....|+.||..+|++++.+|++.|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k-----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ-----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999996 5899999999999999 999999999999997223689999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHHHHHHHHhcCChHHHHHH
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
++++|.++|+.|.+.|+ .++..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++
T Consensus 594 ~ldeA~elf~~M~e~gi--~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNI--KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999 66999999999999999999999999999984 8999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC---CC
Q 011587 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PI 384 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 384 (482)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.||.+|++.|++++|.++|++| |+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999 499999999999999999999999999999998 89
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh----CC----------------
Q 011587 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS----AE---------------- 444 (482)
Q Consensus 385 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g---------------- 444 (482)
.||..||+.++.+|++.|++++|.+++++|.+.+. .||..+|++++..|.+ ++
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi-------~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~ 823 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGI-------KPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQI 823 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence 99999999999999999999999999999999998 4999999999876432 21
Q ss_pred ---CchHHHHHHHHhHhcCCccCCcccEEEeCC
Q 011587 445 ---RWPDVESVRKQMKVKRVETEPGSSILQTTT 474 (482)
Q Consensus 445 ---~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 474 (482)
..++|..+|++|.+.|+.|+..++..++..
T Consensus 824 ~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred ccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 236799999999999999998877666643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=498.96 Aligned_cols=438 Identities=17% Similarity=0.194 Sum_probs=411.4
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC----CCChhh
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD----PPNLFL 76 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~ 76 (482)
+.||..||+.++.+|+ |+++.|.++++.|.+.|+.||..+++.|+.+|+++ |+++.|.++|+.|. .||..+
T Consensus 433 ~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~---G~vd~A~~vf~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS---GKVDAMFEVFHEMVNAGVEANVHT 509 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHcCCCCCHHH
Confidence 5699999999999999 89999999999999999999999999999999999 99999999999998 799999
Q ss_pred HHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHH--hCCCCchhHHHHH
Q 011587 77 FNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK--RGFMFNVLVATTL 150 (482)
Q Consensus 77 ~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l 150 (482)
||.+|.+ |++++|+++|+.|.+.|+.| |..||+.+|.+|++.| + +++|.++|++|.+ .|+.||..+|+.+
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G-~--~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSG-A--VDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 9999998 99999999999999999999 9999999999999999 9 9999999999987 6789999999999
Q ss_pred HHHHHhCCChhHHHHHhccCCC----CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHH
Q 011587 151 IHFYASNKDISSGKKVFDQMPM----RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226 (482)
Q Consensus 151 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~ 226 (482)
+.+|++.|++++|.++|+.|.+ |+..+||.+|.+|++ .|++++|.++|++|. ..|+.||..||+.++.+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-----~G~~deAl~lf~eM~--~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-----KGDWDFALSIYDDMK--KKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHH
Confidence 9999999999999999999974 577999999999999 999999999999999 99999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc----CCCHHHHHHHHHHHHhcCChH
Q 011587 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR----EKNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~ 302 (482)
|++.|++++|.+++++|.+.|+ .++..+|+++|.+|++.|++++|.++|++|. .||..+||.||.+|++.|+++
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999 6699999999999999999999999999995 589999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----c---------
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----A--------- 369 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~--------- 369 (482)
+|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++++|.+. |+.||..+|++++..|.+ +
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999995 999999999999876432 2
Q ss_pred ----------CCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHH
Q 011587 370 ----------GHLEEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436 (482)
Q Consensus 370 ----------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (482)
+..++|..+|++| |+.||..||+.++.++++.++.+.+..+++.+...+. .|+..+|+++
T Consensus 816 f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~-------~~~~~~y~~L 888 (1060)
T PLN03218 816 FDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD-------SQKQSNLSTL 888 (1060)
T ss_pred hhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC-------CcchhhhHHH
Confidence 1246799999999 9999999999999888888999999999988776555 4899999999
Q ss_pred HHHHHhCCCchHHHHHHHHhHhcCCccCCc
Q 011587 437 SNIYASAERWPDVESVRKQMKVKRVETEPG 466 (482)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 466 (482)
++++.+. .++|..++++|...|+.|+..
T Consensus 889 i~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 889 VDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9998443 368999999999999999885
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=449.94 Aligned_cols=382 Identities=23% Similarity=0.350 Sum_probs=365.1
Q ss_pred CCChhhHHHHhcC----CCCccHHHHHHHHHHCC-CCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh
Q 011587 71 PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145 (482)
Q Consensus 71 ~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~-~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (482)
.++..+|+.+|.+ |++++|+++|++|...+ ..| |..||+.++.+|++.+ + ++.+.+++..|.+.|+.||..
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~-~~~t~~~ll~a~~~~~-~--~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTL-PASTYDALVEACIALK-S--IRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHhCCCcchH
Confidence 4566789999887 99999999999999865 567 9999999999999999 9 999999999999999999999
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHH
Q 011587 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225 (482)
Q Consensus 146 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~ 225 (482)
+|+.++.+|++.|+++.|.++|++|++||..+||++|.+|++ .|++++|+++|++|. ..|+.||..||+.++.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~-----~g~~~~A~~lf~~M~--~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD-----AGNYREAFALFREMW--EDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHH-----CcCHHHHHHHHHHHH--HhCCCCChhhHHHHHH
Confidence 999999999999999999999999999999999999999999 999999999999999 8999999999999999
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHH
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 305 (482)
+|++.|..+.+.+++..+.+.|+ .++..++++|+++|++.|++++|.++|++|.++|+.+||.||.+|++.|++++|.
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~--~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGV--VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCC--CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999 6699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCC
Q 011587 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 385 (482)
++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++|+++|+++|++++|.++|++|. .
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~ 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-R 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-C
Confidence 99999999999999999999999999999999999999999995 999999999999999999999999999999996 6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh-cCCccC
Q 011587 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV-KRVETE 464 (482)
Q Consensus 386 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~ 464 (482)
||..+||.||.+|++.|+.++|.++|++|.+.|. .||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-------~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV-------APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 8999999999999999999999999999999988 59999999999999999999999999999975 699998
Q ss_pred CcccEEEeCC
Q 011587 465 PGSSILQTTT 474 (482)
Q Consensus 465 ~~~~~~~~~~ 474 (482)
..++..++..
T Consensus 462 ~~~y~~li~~ 471 (697)
T PLN03081 462 AMHYACMIEL 471 (697)
T ss_pred ccchHhHHHH
Confidence 8776555544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-26 Score=240.94 Aligned_cols=345 Identities=9% Similarity=-0.004 Sum_probs=223.8
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|+.++|...|+++.+.+ |.+...+..+...+...+ + +++|..+++.+.+.. +.+...|..+..+|...|++++|
T Consensus 547 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~--~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKG-Q--LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCC-C--HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44555555555544432 224444444555555544 4 555555555555432 33455556666666666666666
Q ss_pred HHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 164 KKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
...|+.+.+ .+...+..+...+.. .|++++|...|+++. . ..+.+..++..+...+...|++++|.+++
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 621 VSSFKKLLALQPDSALALLLLADAYAV-----MKNYAKAITSLKRAL--E-LKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--h-cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666655432 234455555556665 666666666666654 1 11223555666666666666666666666
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 318 (482)
+.+.+.. +.+...+..+...+...|++++|.+.|+++.+ |+..++..+..++.+.|++++|.+.++++.+.. +.
T Consensus 693 ~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 693 KSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 6666555 44555666666666777777777777766653 444556666677777777777777777776653 33
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+...+..+...|.+.|+.++|..+|+++.+ ..+.+...+..+...+...|+ .+|++.+++. ...| +..++..+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 566677777777777777777777777776 335566777777777777777 6677777766 3334 4556677777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.+...|++++|...++++++.+| .+..++..++.++.+.|++++|.+++++|.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAP--------EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888999999999999999888 688888899999999999999999998876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-25 Score=233.81 Aligned_cols=410 Identities=10% Similarity=0.030 Sum_probs=312.9
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~ 91 (482)
|+.+.+..+++.+... .+.++.++..+...|... |++++|.+.|+... .|+ ...+..+... |++++|.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK---GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5666666666665543 345566677777777777 78888888777654 222 2222222222 78888888
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
.|+.+.+.+ |.+..++..+...+.+.+ + .++|..+++++.+.+ +.+...+..++..|.+.|++++|.++++.+.
T Consensus 521 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~--~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 521 RFEKVLTID--PKNLRAILALAGLYLRTG-N--EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHhC--cCcHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888887754 436677777777777777 7 888888888877664 4456677778888888888888888887775
Q ss_pred C---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC
Q 011587 172 M---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248 (482)
Q Consensus 172 ~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 248 (482)
. .+...|..+...+.. .|++++|...|+.+. .. .+.+...+..+..++...|++++|..+++++.+..
T Consensus 595 ~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLA-----AGDLNKAVSSFKKLL--AL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--Hh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 3 356778888888888 888888888888875 22 23355677778888888888888888888887765
Q ss_pred CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 011587 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325 (482)
Q Consensus 249 ~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 325 (482)
+.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+.+...+ |+..++..
T Consensus 666 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 741 (899)
T TIGR02917 666 --PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIK 741 (899)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHH
Confidence 56677888888888888888888888888764 355677778888888899999999998888764 44466777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGD 403 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 403 (482)
+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|...|++++|.+.|+++ .. +++..+++.+...+...|+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 88888889999999999998887 45667888888889999999999999999887 33 3477888888889999999
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCc
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 462 (482)
.+|...++++.+..| .+..++..+..++.+.|++++|...++++.+.+..
T Consensus 820 -~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 820 -PRALEYAEKALKLAP--------NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred -HHHHHHHHHHHhhCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 889999999999888 67788889999999999999999999999987653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-21 Score=181.50 Aligned_cols=296 Identities=12% Similarity=0.063 Sum_probs=223.1
Q ss_pred HHHHhCCChhHHHHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC---HHHHHHHHH
Q 011587 152 HFYASNKDISSGKKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT---DTTMVCVLS 225 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~~~~~l~~ 225 (482)
..+...|++++|...|+++.+ | +..++..+...+.. .|++++|..+++.+. ..+..++ ..++..+..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l--~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR-----RGEVDRAIRIHQNLL--SRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCcHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHH
Confidence 345566778888888877763 2 44567777777777 788888888888776 4322221 245677777
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC--C------HHHHHHHHHHHHh
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK--N------VLTWTAMATGMAI 297 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~ 297 (482)
.+...|+++.|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+.+. + ...+..+...+.+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 8888888888888888887654 456777888888888888888888888877642 1 1235567777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 011587 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377 (482)
Q Consensus 298 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 377 (482)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +-.....++..++.+|...|++++|.+
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999888754 224567777888888999999999999998873 222224567888889999999999999
Q ss_pred HHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh---CCCchHHHHHH
Q 011587 378 FIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS---AERWPDVESVR 453 (482)
Q Consensus 378 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~ 453 (482)
.++++ ...|+...+..++..+.+.|++++|..+++++++..| +...+..++..+.. .|+.+++..++
T Consensus 271 ~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P---------~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 271 FLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP---------SLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc---------CHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 99887 5567777778888889999999999999999888755 56677777776664 45888999999
Q ss_pred HHhHhcCCccCCccc
Q 011587 454 KQMKVKRVETEPGSS 468 (482)
Q Consensus 454 ~~m~~~~~~~~~~~~ 468 (482)
++|.++++.++|.+.
T Consensus 342 ~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 342 RDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHhCCCCEE
Confidence 999999999988743
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=176.82 Aligned_cols=288 Identities=14% Similarity=0.042 Sum_probs=235.3
Q ss_pred hhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC-C------chhHHHHHHHHhcCC
Q 011587 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR-S------SATWNAMINGYCSQS 189 (482)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~ 189 (482)
...+ + +++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+... + ...+..+...|.+
T Consensus 46 ~~~~-~--~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~-- 119 (389)
T PRK11788 46 LLNE-Q--PDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK-- 119 (389)
T ss_pred HhcC-C--hHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--
Confidence 3444 5 888999999998874 445678888888899999999999998877642 1 2457788889999
Q ss_pred cccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCC--chhHHHHHHHHHHcC
Q 011587 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN--DVFIGTALVDMYSKC 267 (482)
Q Consensus 190 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~~~li~~~~~~ 267 (482)
.|++++|+.+|+++. .. .+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ....+..+...+.+.
T Consensus 120 ---~g~~~~A~~~~~~~l--~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 120 ---AGLLDRAEELFLQLV--DE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred ---CCCHHHHHHHHHHHH--cC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999999996 32 3456778999999999999999999999999887631110 122456778889999
Q ss_pred CChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 268 GCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 268 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
|++++|...|+++.+ | +...+..+...+.+.|++++|.++|+++.+.+......++..+..+|.+.|++++|...++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999874 3 4567888899999999999999999999876443335678889999999999999999999
Q ss_pred HhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHhcCC
Q 011587 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNV---HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 419 (482)
++.+. .|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+.+.
T Consensus 274 ~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 99884 466677788999999999999999999877 667999999988887764 5589999999999998665
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-18 Score=184.03 Aligned_cols=404 Identities=11% Similarity=-0.008 Sum_probs=314.5
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCCh---hhHHHH-------------
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPNL---FLFNTL------------- 80 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~~---~~~~~l------------- 80 (482)
|++++|...++...+.. +.+...+..+..+|.+. |++++|+..|+... .|+. ..|..+
T Consensus 283 g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~---g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ---GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 88999999998888754 34567777888888888 99999999998765 2322 112111
Q ss_pred ---hcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 011587 81 ---IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157 (482)
Q Consensus 81 ---l~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (482)
+..|++++|++.|+++.+.. |.+...+..+...+...+ + +++|.+.|+++++.. +.+...+..+...|. .
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g-~--~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARK-D--YAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 12299999999999999864 546777777888888888 8 999999999999874 345666777777774 4
Q ss_pred CChhHHHHHhccCCCCC------------chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHH
Q 011587 158 KDISSGKKVFDQMPMRS------------SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVL 224 (482)
Q Consensus 158 g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~ 224 (482)
++.++|..+++.+.... ...+..+...+.. .|++++|++.|++.. ...| +...+..+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-----~g~~~eA~~~~~~Al----~~~P~~~~~~~~LA 502 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-----QGKWAQAAELQRQRL----ALDPGSVWLTYRLA 502 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----CCCHHHHHHHHHHHH----HhCCCCHHHHHHHH
Confidence 67899999988776321 2234556667777 999999999999987 3345 566788889
Q ss_pred HHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC----CH---------HHHHHH
Q 011587 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK----NV---------LTWTAM 291 (482)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l 291 (482)
..+.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+... +. ..+..+
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~---P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK---PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 99999999999999999998765 556666666677788899999999999988642 11 122345
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
...+...|++++|..+++. .+++...+..+...+.+.|+.++|...|++..+. -+.+...+..++..|...|+
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 6678899999999999882 2445667778889999999999999999999983 45578899999999999999
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccC---CchhHHHHHHHHHhCCCc
Q 011587 372 LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC---TSEDFVALSNIYASAERW 446 (482)
Q Consensus 372 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 446 (482)
.++|++.++.. ...| +...+..+..++...|++++|.+++++++...++. .| +...+..+...+.+.|++
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~-----~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ-----PPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC-----CcchhhHHHHHHHHHHHHHcCCH
Confidence 99999999987 4455 45667778888999999999999999999876520 01 224566778899999999
Q ss_pred hHHHHHHHHhH
Q 011587 447 PDVESVRKQMK 457 (482)
Q Consensus 447 ~~a~~~~~~m~ 457 (482)
++|...+++..
T Consensus 728 ~~A~~~y~~Al 738 (1157)
T PRK11447 728 QQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=165.27 Aligned_cols=347 Identities=14% Similarity=0.124 Sum_probs=284.7
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhH-HHHHHHHHHhCCChhH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV-ATTLIHFYASNKDISS 162 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~ 162 (482)
|++++|+.+++.+.+.. |.....|..+..++...| + .+.|.+.|.+.++. .|+... .+.+....-..|++++
T Consensus 130 g~~~~al~~y~~aiel~--p~fida~inla~al~~~~-~--~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQG-D--LELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcC-C--CcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccch
Confidence 88888888888888854 557778888888888877 7 88888888888765 455443 3334444455688888
Q ss_pred HHHHhccCCC--CC-chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccCchHHHHH
Q 011587 163 GKKVFDQMPM--RS-SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLGLLEFGAC 238 (482)
Q Consensus 163 A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 238 (482)
|...+.+..+ |. ...|+.|...+.. +|+...|+.-|++.. .+.|+ ...|..|.+.|...+.++.|..
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~-----~Gei~~aiq~y~eAv----kldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNA-----QGEIWLAIQHYEEAV----KLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhh-----cchHHHHHHHHHHhh----cCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 8877766543 32 4578888888888 999999999999876 56675 4588999999999999999999
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 315 (482)
.|.++.... +....++..+...|...|+++.|+..|++..+ | -...|+.|..++-..|++.+|.+.+.+.....
T Consensus 274 ~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 998888776 67788888899999999999999999999875 4 35789999999999999999999999988763
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHH
Q 011587 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRS 393 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 393 (482)
. --....+.|...|...|.++.|..+|....+ -.+--....+.|...|-..|++++|+..+++. .++|+ ...|+.
T Consensus 351 p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 P-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred C-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 2 2456778899999999999999999998887 23334567888999999999999999999988 88886 568899
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+...|-..|+.+.|.+.+.+++..+| .-...++.|...|..+|++.+|+.-+++..+..
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nP--------t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINP--------TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCc--------HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999998 678888999999999999999999998877443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-18 Score=174.37 Aligned_cols=353 Identities=10% Similarity=-0.030 Sum_probs=267.8
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|++.|++.... .| +...|..+..++...+ + +++|.+.++..++.. +.+..+|..+..+|...|++++|
T Consensus 141 ~~~~~Ai~~y~~al~~--~p-~~~~~~n~a~~~~~l~-~--~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC--KP-DPVYYSNRAACHNALG-D--WEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred CCHHHHHHHHHHHHhc--CC-chHHHHHHHHHHHHhC-C--HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888887763 46 6667777777777777 7 888888888877763 33566777778888888888877
Q ss_pred HHHhccCCC---------------------------------CCchhHHHHHHHHh------------------------
Q 011587 164 KKVFDQMPM---------------------------------RSSATWNAMINGYC------------------------ 186 (482)
Q Consensus 164 ~~~~~~~~~---------------------------------~~~~~~~~li~~~~------------------------ 186 (482)
..-|..... .+...+..+...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 654432210 01111111100000
Q ss_pred --cCC-----cccccchHHHHHHHHHhhhccCC-CCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHH
Q 011587 187 --SQS-----KKAKDCAFNALVLFRDMLVDVSG-VKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257 (482)
Q Consensus 187 --~~~-----~~~~~~~~~a~~~~~~m~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 257 (482)
..+ ....+.+++|++.|+... ..+ ..| +...+..+...+...|++++|...+++.++.. +.....|
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al--~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~~~~~ 368 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKAL--DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRVTQSY 368 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHH--hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHH
Confidence 000 000357889999999987 443 334 45578888888899999999999999999876 5667788
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
..+...+...|++++|...|++..+ .+..+|..+...+...|++++|...|++..+... .+...+..+...+.+.|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCC
Confidence 9999999999999999999998864 3678899999999999999999999999988743 35677778888999999
Q ss_pred cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCH-H-------HHHHHHHHHHhcCCHh
Q 011587 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDA-I-------LWRSLLSACNVHGDVA 405 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~ 405 (482)
++++|...|++..+ ..+.+...++.+...+...|++++|.+.|++. .+.|+. . .++..+..+...|+++
T Consensus 448 ~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 448 SIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999988 44556788999999999999999999999886 444421 1 1222223344469999
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
+|..+++++++.+| .+...+..++.++.+.|++++|...+++..+.
T Consensus 526 eA~~~~~kAl~l~p--------~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 526 EAENLCEKALIIDP--------ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999988 67778999999999999999999999987644
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-17 Score=177.61 Aligned_cols=415 Identities=10% Similarity=-0.010 Sum_probs=236.4
Q ss_pred HHHHhccCcchHHHHHHHHHHhcCCCCchHHH-HHHHHHhcCCCCCChHHHHHHhhcCC--CCChhh-HHHHhcC----C
Q 011587 13 LKLKAITTPSHIKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFD--PPNLFL-FNTLIRC----T 84 (482)
Q Consensus 13 ~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~-~~~ll~~----~ 84 (482)
++... |+.++|.+.++.+.+.. +++..... .+....... |++++|++.++.+. .|+... +..+-.. |
T Consensus 121 ll~~~-g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~---g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 121 LLATT-GRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLP---AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHhC-CCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCC---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 34444 88888888888887653 33322211 122222334 78888888888876 343222 2211111 8
Q ss_pred CCccHHHHHHHHHHCCC------------------C--------------CCChhhH-------------------H--H
Q 011587 85 PPQDSVLVFAYWVSKGL------------------L--------------TFDDFTY-------------------V--F 111 (482)
Q Consensus 85 ~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~~-------------------~--~ 111 (482)
+.++|++.|+++.+... . | +...+ . .
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p-~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFS-DGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCC-CchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 88888888887754321 0 1 10000 0 0
Q ss_pred HHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--CCc---hhHHHH-----
Q 011587 112 ALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSS---ATWNAM----- 181 (482)
Q Consensus 112 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----- 181 (482)
.-..+...+ + +++|...|++.++.. +.+..++..+...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 275 ~G~~~~~~g-~--~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 275 QGLAAVDSG-Q--GGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHCC-C--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 112233344 5 999999999999874 44788899999999999999999999988753 321 122222
Q ss_pred -------HHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch
Q 011587 182 -------INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254 (482)
Q Consensus 182 -------i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 254 (482)
...+.+ .|++++|+..|++.. .. .+.+...+..+...+...|++++|++.|+++++.. +.+.
T Consensus 351 ~~~~~~~g~~~~~-----~g~~~eA~~~~~~Al--~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~ 419 (1157)
T PRK11447 351 YWLLIQQGDAALK-----ANNLAQAERLYQQAR--QV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD---PGNT 419 (1157)
T ss_pred HHHHHHHHHHHHH-----CCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCH
Confidence 334566 899999999999987 32 22356677788899999999999999999998876 4445
Q ss_pred hHHHHHHHHH------------------------------------------HcCCChHHHHHHHHhccC--C-CHHHHH
Q 011587 255 FIGTALVDMY------------------------------------------SKCGCLDNALLIFSRMRE--K-NVLTWT 289 (482)
Q Consensus 255 ~~~~~li~~~------------------------------------------~~~g~~~~A~~~~~~~~~--~-~~~~~~ 289 (482)
..+..+...| ...|++++|++.|++..+ | +...+.
T Consensus 420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5555444444 334555555555555442 2 333444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-----------------
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV----------------- 352 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 352 (482)
.+...|.+.|++++|...++++.+.... +...+..+...+...++.++|...++.+... ..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHH
Confidence 5555555556666666666555543211 2223333333344555555665555544221 10
Q ss_pred ----------------------CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 011587 353 ----------------------EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 353 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
+.+...+..+...+.+.|+.++|++.|++. ...| +...+..+...+...|++++|+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 112222333444444455555555555544 2233 3445555555555555555555
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
+.++.+.+..| .+...+..+..++.+.|++++|.++++++..
T Consensus 658 ~~l~~ll~~~p--------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 658 AQLAKLPATAN--------DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHhccCC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 55555555444 3444455555555556666666666655554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=159.36 Aligned_cols=367 Identities=13% Similarity=0.099 Sum_probs=303.7
Q ss_pred chHHHHHHHHHhcCCCCCChHHHHHHhhcCCC--CC-hhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHH
Q 011587 40 PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP--PN-LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFA 112 (482)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~l 112 (482)
...++-+.+++..+ |.++.|..+++.+.+ |+ +..|..+-.+ |+.+.|.+.|.+..+.. | +.....+-
T Consensus 116 ae~ysn~aN~~ker---g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P-~l~ca~s~ 189 (966)
T KOG4626|consen 116 AEAYSNLANILKER---GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--P-DLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHh---chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--c-chhhhhcc
Confidence 45667788889888 999999999999873 32 2334333222 99999999999999854 6 55544444
Q ss_pred HHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhHHHHHhccCCCCC---chhHHHHHHHHhcC
Q 011587 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRS---SATWNAMINGYCSQ 188 (482)
Q Consensus 113 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~ 188 (482)
+..+.+.. |++.+|...+.+.++. .|. ..+|+.|...+-..|++-.|++-|++..+-| ..+|-.|...|..
T Consensus 190 lgnLlka~--Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke- 264 (966)
T KOG4626|consen 190 LGNLLKAE--GRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE- 264 (966)
T ss_pred hhHHHHhh--cccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-
Confidence 44444433 4499999999998876 343 5679999999999999999999999987543 4578888899999
Q ss_pred CcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC
Q 011587 189 SKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267 (482)
Q Consensus 189 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 267 (482)
.+.+++|+..|.+.. ...|+ ...+..+...|...|.++.|...|++.++.. |.-...|+.|.+++-..
T Consensus 265 ----~~~~d~Avs~Y~rAl----~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 265 ----ARIFDRAVSCYLRAL----NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDAYNNLANALKDK 333 (966)
T ss_pred ----HhcchHHHHHHHHHH----hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHHHhHHHHHHHhc
Confidence 999999999999876 55675 4578888888999999999999999999987 66788999999999999
Q ss_pred CChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 011587 268 GCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN-AVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 268 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
|++.+|.+.|.+... ....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|...+
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 999999999999874 35678899999999999999999999998875 443 567889999999999999999999
Q ss_pred HHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 344 DNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 344 ~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
++..+ +.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|...|...|++.+|.+-++.+++..|
T Consensus 412 kealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP- 487 (966)
T KOG4626|consen 412 KEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP- 487 (966)
T ss_pred HHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-
Confidence 99986 4565 568999999999999999999999887 77774 56788999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHH
Q 011587 421 VTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~ 441 (482)
..+..|..++-++-
T Consensus 488 -------DfpdA~cNllh~lq 501 (966)
T KOG4626|consen 488 -------DFPDAYCNLLHCLQ 501 (966)
T ss_pred -------CCchhhhHHHHHHH
Confidence 45566665555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-17 Score=165.59 Aligned_cols=316 Identities=11% Similarity=-0.029 Sum_probs=244.7
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|+.+++........ +...+..+..+....| + ++.|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 56 g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g-~--~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASS-Q--PDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred CCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcC-C--HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999886533 4555555555666666 7 999999999998874 44677788888899999999999
Q ss_pred HHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 164 KKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 164 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
.+.|++... | +...+..+...+.. .|++++|...++.+. ... +.+...+..+ ..+...|++++|...+
T Consensus 130 i~~l~~Al~l~P~~~~a~~~la~~l~~-----~g~~~eA~~~~~~~~--~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 130 ADLAEQAWLAFSGNSQIFALHLRTLVL-----MDKELQAISLARTQA--QEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-----CCChHHHHHHHHHHH--HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999988763 3 56678888888888 999999999998775 222 1223333333 3477889999999999
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHH----HHHHHHHHHh
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNE----AIRLLDSMRD 313 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~ 313 (482)
+.+.+... ..+......+...+...|++++|+..|++..+ .+...+..+...+...|++++ |...|++..+
T Consensus 201 ~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 98877653 23444555667788899999999999998874 356778888889999999885 7899999887
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHH-H
Q 011587 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAIL-W 391 (482)
Q Consensus 314 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~ 391 (482)
... .+...+..+...+.+.|++++|...+++..+. -+.+...+..+..+|.+.|++++|.+.++++ ...|+... +
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 643 36678888889999999999999999998873 3445667778888999999999999999887 45565443 3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 392 RSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 392 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..+..++...|+.++|...|+++.+..|
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3456678889999999999999999887
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-17 Score=164.23 Aligned_cols=329 Identities=11% Similarity=-0.029 Sum_probs=267.1
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 181 (482)
+......++..+.+.| + ++.|..+++..+... +-+...+..++.+....|+++.|...|+++.. | +...+..+
T Consensus 41 ~~~~~~~~~~~~~~~g-~--~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l 116 (656)
T PRK15174 41 NEQNIILFAIACLRKD-E--TDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV 116 (656)
T ss_pred cccCHHHHHHHHHhcC-C--cchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4445556667777777 7 999999999999874 33455666677777889999999999999863 3 56778888
Q ss_pred HHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 011587 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260 (482)
Q Consensus 182 i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 260 (482)
...+.. .|++++|+..|++.. .+.| +...+..+...+...|++++|...++.+.... +.+...+..+
T Consensus 117 a~~l~~-----~g~~~~Ai~~l~~Al----~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~ 184 (656)
T PRK15174 117 ASVLLK-----SKQYATVADLAEQAW----LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC 184 (656)
T ss_pred HHHHHH-----cCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 889999 999999999999987 3445 56688889999999999999999999887776 3344444444
Q ss_pred HHHHHcCCChHHHHHHHHhccCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 011587 261 VDMYSKCGCLDNALLIFSRMREK----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
. .+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+... .+...+..+...+...|++
T Consensus 185 ~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 185 L-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCc
Confidence 3 478899999999999997652 334455567788999999999999999998753 3567788889999999999
Q ss_pred HH----HHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 011587 337 EE----GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKV 410 (482)
Q Consensus 337 ~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 410 (482)
++ |...+++..+ ..+.+...+..+...+...|++++|...+++. ...| +...+..+..++.+.|++++|...
T Consensus 263 ~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 263 REAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 86 8999999988 34556788999999999999999999999988 4456 456777788899999999999999
Q ss_pred HHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
++++.+..| .+...+..+..++...|++++|...+++..+...
T Consensus 341 l~~al~~~P--------~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 341 FVQLAREKG--------VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHhCc--------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 999999888 4555566677889999999999999999875543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-16 Score=159.70 Aligned_cols=395 Identities=9% Similarity=-0.050 Sum_probs=291.4
Q ss_pred hhhHHHHHHHhccCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhc-
Q 011587 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIR- 82 (482)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~- 82 (482)
..-|+.+.... |+.++|.+++....... +.+...+..+..++... |++++|.++++... .|+ ...+..+..
T Consensus 18 ~~d~~~ia~~~-g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 18 IADWLQIALWA-GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL---KQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34466677777 99999999988887622 44455678888888888 99999999999954 343 323322222
Q ss_pred ---CCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 011587 83 ---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159 (482)
Q Consensus 83 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 159 (482)
.|++++|+..++++.+.. |.+.. +..+..++...+ + .++|...++++.+.. +.+...+..+...+...|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g-~--~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAG-R--HWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCC-C--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 299999999999999864 54666 777877888877 8 999999999999874 4466677778888889999
Q ss_pred hhHHHHHhccCCC-CCc------hhHHHHHHHHhcCCcccccch---HHHHHHHHHhhhccC-CCCcCHH-HHH----HH
Q 011587 160 ISSGKKVFDQMPM-RSS------ATWNAMINGYCSQSKKAKDCA---FNALVLFRDMLVDVS-GVKPTDT-TMV----CV 223 (482)
Q Consensus 160 ~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~~~~~~~~~---~~a~~~~~~m~~~~~-~~~p~~~-~~~----~l 223 (482)
.+.|.+.++.... |+. .....++......+....+++ ++|+..++.+. .. ...|+.. .+. ..
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll--~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE--ALWHDNPDATADYQRARIDR 243 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH--hhcccCCccchHHHHHHHHH
Confidence 9999999988775 110 122233333322111113344 77888888886 32 2233221 111 11
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC-------HHHHHHHHHHHH
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-------VLTWTAMATGMA 296 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~ 296 (482)
+.++...|++++|...|+.+.+.+. +........+..+|...|++++|+.+|+++.+.+ ......+..++.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~--~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQ--IIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 3345677999999999999998763 2122222335779999999999999999986422 234666777889
Q ss_pred hcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 297 IHGKGNEAIRLLDSMRDCGV-----------KPN---AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~-----------~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
..|++++|...++.+..... .|+ ...+..+...+...|+.++|+.+++++.. ..+-+...+..+
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~l 399 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDY 399 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999999999999987531 123 22455677788899999999999999988 456678899999
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+...|++++|++.+++. .+.|+ ...+......+...|++++|+.+++++++..|
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999988 66675 56666777788899999999999999999988
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-16 Score=158.43 Aligned_cols=395 Identities=10% Similarity=-0.018 Sum_probs=292.1
Q ss_pred CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCC--C-ChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhH
Q 011587 37 KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP--P-NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTY 109 (482)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~ 109 (482)
+.++....-.+.+.... |+.++|++++..... | +...+..+-.. |++++|.++|+...+.. |.+...+
T Consensus 12 ~~~~~~~~d~~~ia~~~---g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~ 86 (765)
T PRK10049 12 ALSNNQIADWLQIALWA---GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQ 86 (765)
T ss_pred CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 44555566677777778 999999999998763 2 22223433222 99999999999999853 6467777
Q ss_pred HHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHHHHHHHHh
Q 011587 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWNAMINGYC 186 (482)
Q Consensus 110 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 186 (482)
..+...+...+ + +++|...++++++.. +.+.. +..+..++...|+.++|+..+++..+ | +...+..+...+.
T Consensus 87 ~~la~~l~~~g-~--~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 87 RGLILTLADAG-Q--YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHCC-C--HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78888888888 8 999999999999873 44566 88889999999999999999999874 3 5556667777888
Q ss_pred cCCcccccchHHHHHHHHHhhhccCCCCcCH------HHHHHHHHHhh-----ccCch---HHHHHHHHHHHHh-CCCCC
Q 011587 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTD------TTMVCVLSVSS-----QLGLL---EFGACVHGYMEKT-FYMPE 251 (482)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~p~ 251 (482)
. .+..+.|+..++... . .|+. .....++.... ..+++ +.|...++.+.+. ...|.
T Consensus 162 ~-----~~~~e~Al~~l~~~~--~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 162 N-----NRLSAPALGAIDDAN--L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred H-----CCChHHHHHHHHhCC--C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 8 899999999998775 2 3332 11222222222 22234 6778888888765 22221
Q ss_pred CchhHH---HHHHHHHHcCCChHHHHHHHHhccCCC--HH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHH
Q 011587 252 NDVFIG---TALVDMYSKCGCLDNALLIFSRMREKN--VL--TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP---NAV 321 (482)
Q Consensus 252 ~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~ 321 (482)
...... ...+.++...|++++|+..|+++.+.+ .. ....+...|...|++++|+..|+++.+..... ...
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 111111 111334567799999999999998632 11 22335778999999999999999987653221 134
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCcC---HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWG----------VEPH---IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP- 386 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 386 (482)
....+..++...|++++|..+++.+.+... -.|+ ...+..+...+...|+.++|+++++++ ...|
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 456677788999999999999999987310 0123 234566778889999999999999998 4345
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
+...+..+...+...|++++|++.++++++..| .+...+...+..+.+.|++++|..+++++...
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--------d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEP--------RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 677888899999999999999999999999999 78888899999999999999999999998753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-14 Score=148.45 Aligned_cols=214 Identities=14% Similarity=0.066 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLL 308 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 308 (482)
++.++|...+.+..... + +......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~---P-d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ---P-DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhC---C-chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444555454444433 1 222233334444577888888888877653 34445566667777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-
Q 011587 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP- 386 (482)
Q Consensus 309 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 386 (482)
+...+.. +++...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|+..+++. ...|
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 8887764 223333333344445568999999999888873 467888888889999999999999999888 5566
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+...++.+..++...|++++|...++++++..| .+...+..+..++...|++++|...+++..+..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P--------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLP--------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 566777788888999999999999999999998 788899999999999999999999999887544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-15 Score=152.65 Aligned_cols=248 Identities=13% Similarity=0.045 Sum_probs=202.1
Q ss_pred CChhHHHHHhccCCC-----C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhcc
Q 011587 158 KDISSGKKVFDQMPM-----R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQL 230 (482)
Q Consensus 158 g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~ 230 (482)
+++++|.+.|+.... | ....|+.+...+.. .|++++|+..|++.. ...|+ ...|..+...+...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~-----~g~~~eA~~~~~kal----~l~P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL-----KGKHLEALADLSKSI----ELDPRVTQSYIKRASMNLEL 378 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHC
Confidence 578889998887653 2 44567888888888 999999999999986 33454 56888889999999
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
|++++|...++++++.. +.+..++..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..
T Consensus 379 g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998886 66788999999999999999999999999874 3 567788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH------HHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI------KHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
|++..+.. +-+...++.+...+...|++++|...|++..+. .-..+. ..++.....+...|++++|.+++++
T Consensus 456 ~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 456 FRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99998763 335778888999999999999999999998873 211111 1122222334457999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 382 I-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 382 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
. .+.| +...+..+...+...|++++|...|+++.+...
T Consensus 534 Al~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 534 ALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 6 5556 455788899999999999999999999998876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-14 Score=142.68 Aligned_cols=412 Identities=10% Similarity=-0.020 Sum_probs=270.9
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC-------CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-------TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~-------~~~~~a~~ 91 (482)
|+...|...+.+..+..-...+.+. .++.++... |+.++|+..++....|+...+..++.. |++++|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~---G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA---GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc---CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777665533222233 666677777 888888888888776655555444411 88888888
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
+|+++.+.. |.++..+..++..+...+ + .++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 124 ly~kaL~~d--P~n~~~l~gLa~~y~~~~-q--~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 124 LWQSSLKKD--PTNPDLISGMIMTQADAG-R--GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhcC-C--HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 888888754 546666666666667766 6 78888888877765 4555555445455544566656888887776
Q ss_pred C--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH------HHHHHHHh-----hccCchHHH-
Q 011587 172 M--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT------MVCVLSVS-----SQLGLLEFG- 236 (482)
Q Consensus 172 ~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~------~~~l~~~~-----~~~~~~~~a- 236 (482)
+ | +...+..+..++.+ .|-...|+++.+.-. .-+.+...- ....++.- ....++..+
T Consensus 197 ~~~P~n~e~~~~~~~~l~~-----~~~~~~a~~l~~~~p---~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQR-----NRIVEPALRLAKENP---NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HhCCCCHHHHHHHHHHHHH-----cCCcHHHHHHHHhCc---cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 3 3 45566666777777 666666766655432 111111110 11111111 011223333
Q ss_pred --HHHHHHHHHh-CCCCCCch---hHHHHHHHHHHcCCChHHHHHHHHhccCC----CHHHHHHHHHHHHhcCChHHHHH
Q 011587 237 --ACVHGYMEKT-FYMPENDV---FIGTALVDMYSKCGCLDNALLIFSRMREK----NVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 237 --~~~~~~~~~~-~~~p~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
..-++.+... +..|+... ....-.+-++...|++.++++.|+.+..+ ...+-..+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 3333333331 12122111 12223455777888999999999999843 23455677888999999999999
Q ss_pred HHHHHHhCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC----------CcC---HHHHHHHHHHHhc
Q 011587 307 LLDSMRDCG-----VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV----------EPH---IKHYSCIVDLLGR 368 (482)
Q Consensus 307 ~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~li~~~~~ 368 (482)
+++.+.... ..++......|..++...+++++|..+++.+.+.... .|| ...+..++..+.-
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999886543 1223444577888999999999999999999873110 122 2234456777888
Q ss_pred cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 369 AGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 369 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
.|+..+|++.++++ ...| |......+...+...|.+.+|++.++.+....| .+..+....+.++...|+|
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P--------~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP--------RSLILERAQAETAMALQEW 500 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--------ccHHHHHHHHHHHHhhhhH
Confidence 99999999999988 4445 788888888889999999999999988888888 6788888899999999999
Q ss_pred hHHHHHHHHhH
Q 011587 447 PDVESVRKQMK 457 (482)
Q Consensus 447 ~~a~~~~~~m~ 457 (482)
.+|..+.+.+.
T Consensus 501 ~~A~~~~~~l~ 511 (822)
T PRK14574 501 HQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHH
Confidence 99988886654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-13 Score=119.93 Aligned_cols=422 Identities=12% Similarity=0.032 Sum_probs=293.7
Q ss_pred hHHHHHHHhc-cCcchHHHHHHHHHHhcCCCCchHHHHHH---HHHhcCCCCCChHHHHHHhhcCC---CCChhhHHHHh
Q 011587 9 CFALLKLKAI-TTPSHIKQIHAQLITNALKSPPLYAQLIQ---LYCTKKASPQSTKIVHFVFTHFD---PPNLFLFNTLI 81 (482)
Q Consensus 9 ~~~~~l~~~~-~~~~~~~~i~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll 81 (482)
|=+.+++-.. +...++.-+++.|...|.+.+..+...|. .+|... .-+-.-.+.|-.|. +.+..+|-
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~---~~~~~E~~~Fv~~~~~~E~S~~sWK--- 191 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSS---NVPFAEWEEFVGMRNFGEDSTSSWK--- 191 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCC---CCcchhHHHHhhccccccccccccc---
Confidence 3344444332 78899999999999999888877665443 344433 22211122232332 22222332
Q ss_pred cCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
+-+-|.-+|+. .|....||.++|..+|+.. . .+.|.+++++......+.+..++|.+|.+-.-..+
T Consensus 192 ---~G~vAdL~~E~------~PKT~et~s~mI~Gl~K~~-~--~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-- 257 (625)
T KOG4422|consen 192 ---SGAVADLLFET------LPKTDETVSIMIAGLCKFS-S--LERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-- 257 (625)
T ss_pred ---cccHHHHHHhh------cCCCchhHHHHHHHHHHHH-h--HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc--
Confidence 22233333332 3448899999999999998 8 99999999999988778999999999986544433
Q ss_pred HHHHHhccCC----CCCchhHHHHHHHHhcCCcccccchH----HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch
Q 011587 162 SGKKVFDQMP----MRSSATWNAMINGYCSQSKKAKDCAF----NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233 (482)
Q Consensus 162 ~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~----~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~ 233 (482)
.+++.+|. .||..|+|+++++..+ .|+++ .|++++.+|+ +-|+.|...+|..++..+++.++.
T Consensus 258 --K~Lv~EMisqkm~Pnl~TfNalL~c~ak-----fg~F~~ar~aalqil~EmK--eiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 258 --KKLVAEMISQKMTPNLFTFNALLSCAAK-----FGKFEDARKAALQILGEMK--EIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred --HHHHHHHHHhhcCCchHhHHHHHHHHHH-----hcchHHHHHHHHHHHHHHH--HhCCCcchhhHHHHHHHhcccCCc
Confidence 55555554 6899999999999999 66544 5678889998 999999999999999999998887
Q ss_pred HH-HHHHHHHHHH----hCCCC--CCchhHHHHHHHHHHcCCChHHHHHHHHhccC--------C---CHHHHHHHHHHH
Q 011587 234 EF-GACVHGYMEK----TFYMP--ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--------K---NVLTWTAMATGM 295 (482)
Q Consensus 234 ~~-a~~~~~~~~~----~~~~p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~ 295 (482)
.+ +..++..+.. ..+.| +.+...|...+..|.+..+.+.|.++-.-... + ...-|..+....
T Consensus 329 ~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~li 408 (625)
T KOG4422|consen 329 QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLI 408 (625)
T ss_pred hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHH
Confidence 55 3344444433 22222 44667788889999999999988887665542 1 223566777788
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-CH--
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-HL-- 372 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~-- 372 (482)
|+....+..+..|+.|.-.-..|+..+...++++..-.+.++-.-++|..+.. +|..-+...-..++..+++.+ ++
T Consensus 409 cq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~t 487 (625)
T KOG4422|consen 409 CQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLT 487 (625)
T ss_pred HHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCC
Confidence 88888999999999998877788999999999999999999999999999988 576555555555555555544 11
Q ss_pred -HH----------HHHHHH-------cC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 373 -EE----------AYNFIM-------GI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 373 -~~----------A~~~~~-------~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
+. |..+++ ++ ...-.....+...-.+.+.|..++|.+++.-..+.+.++. ..|.....
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip---~~p~lnAm 564 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP---RSPLLNAM 564 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC---CCcchhhH
Confidence 11 111221 11 2233455566667778899999999999999877665421 12444444
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 434 VALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
.-+++.-.+..+.-.|..+++-|...+.+.
T Consensus 565 ~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 565 AELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 466667777888889999998887766643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-13 Score=136.90 Aligned_cols=385 Identities=14% Similarity=0.084 Sum_probs=271.0
Q ss_pred HHhcCCCCCChHHHHHHhhcCCC--CChh-hHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccC
Q 011587 49 YCTKKASPQSTKIVHFVFTHFDP--PNLF-LFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121 (482)
Q Consensus 49 ~~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~ 121 (482)
..++. |+++.|+..|+...+ |+.. ....++.. |+.++|+..+++.... .|........+...+...+
T Consensus 43 i~~r~---Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~g- 116 (822)
T PRK14574 43 IRARA---GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEK- 116 (822)
T ss_pred HHHhC---CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcC-
Confidence 44555 999999999998873 4321 11122222 9999999999999831 1212333333345666667
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
+ +++|.++++++++.. +-++..+..++..+...++.++|++.++.+...++.....+..++...+ .++..+|++
T Consensus 117 d--yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~---~~~~~~AL~ 190 (822)
T PRK14574 117 R--WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA---TDRNYDALQ 190 (822)
T ss_pred C--HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh---cchHHHHHH
Confidence 7 999999999999885 4457778888899999999999999999998644333323444444422 556666999
Q ss_pred HHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchh-H----HHHHHHHH---H--cCCC-
Q 011587 202 LFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF-I----GTALVDMY---S--KCGC- 269 (482)
Q Consensus 202 ~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~----~~~li~~~---~--~~g~- 269 (482)
.++++. ...| +...+..+..++.+.|-...|.++..+-...-. +.+.. . ...++..- . ...+
T Consensus 191 ~~ekll----~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 191 ASSEAV----RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHH----HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 999997 3345 677788889999999999888877765332111 11100 0 01111110 0 1122
Q ss_pred --hHHHHHHHHhccC-----CCH-HH----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 011587 270 --LDNALLIFSRMRE-----KNV-LT----WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337 (482)
Q Consensus 270 --~~~A~~~~~~~~~-----~~~-~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 337 (482)
.+.|+.-++.+.. |.. .. .--.+-++...|++.++++.|+.|...|.+.-..+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 3344555555442 321 11 22345577889999999999999999886655567889999999999999
Q ss_pred HHHHHHHHhHHhcC----CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCC-------------C--CH-HHHHHHHH
Q 011587 338 EGLHLFDNMKSKWG----VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-------------P--DA-ILWRSLLS 396 (482)
Q Consensus 338 ~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-------------p--~~-~~~~~l~~ 396 (482)
+|+.++..+....+ .+++......|.-+|...+++++|..+++++ ... | |- ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999977321 2334444678899999999999999999888 111 2 22 23444566
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+...|+..+|++.++++....| -|......+...+...|...+|...++.....
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP--------~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAP--------ANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 78899999999999999999999 89999999999999999999999999776643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-13 Score=135.21 Aligned_cols=382 Identities=9% Similarity=-0.028 Sum_probs=279.2
Q ss_pred HHHHhcCCCCCChHHHHHHhhcCCCCChhhH----HHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCc
Q 011587 47 QLYCTKKASPQSTKIVHFVFTHFDPPNLFLF----NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122 (482)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~ 122 (482)
+..+.+. +.++.++++.+ . .|..... -..+..+...++.+.+..|.+.. |.+......+--...+.| +
T Consensus 320 ~~~~~~~---~~~~~~~~~~~-~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~-~ 391 (987)
T PRK09782 320 LPVLLKE---GQYDAAQKLLA-T-LPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNG-Q 391 (987)
T ss_pred HHHHHhc---cHHHHHHHHhc-C-CCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcc-c
Confidence 6677777 88998888855 2 2222211 11111167777888888887752 325555555555556666 7
Q ss_pred chhhhHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhCCC---hhHHHHHhccCC-------------------------C
Q 011587 123 STLWLGRQIHVHVTKR-G-FMFNVLVATTLIHFYASNKD---ISSGKKVFDQMP-------------------------M 172 (482)
Q Consensus 123 ~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-------------------------~ 172 (482)
.++|.++++..... + -.++....+.++..|.+.+. ..++..+-..+. .
T Consensus 392 --~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 469 (987)
T PRK09782 392 --SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG 469 (987)
T ss_pred --HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc
Confidence 99999999998873 1 23355566688899988877 344443322111 0
Q ss_pred ---C--CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhC
Q 011587 173 ---R--SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247 (482)
Q Consensus 173 ---~--~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (482)
+ +...|..+..++. .++..+|+..+.+.. ...|+......+...+...|++++|...++++....
T Consensus 470 ~~p~~~~~~a~~~LG~~l~------~~~~~eAi~a~~~Al----~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYR------DTLPGVALYAWLQAE----QRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred cCCCCCCHHHHHHHHHHHH------hCCcHHHHHHHHHHH----HhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 1 3445555555554 457778999887765 334665554455566678999999999999875543
Q ss_pred CCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 011587 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV---LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324 (482)
Q Consensus 248 ~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 324 (482)
++...+..+..++.+.|+.++|..+|++..+.+. ..+..+.......|++++|...+++..+. .|+...+.
T Consensus 540 ----p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 540 ----MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred ----CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 2334466778889999999999999998876332 23333333444569999999999999886 45788899
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcC
Q 011587 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHG 402 (482)
Q Consensus 325 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 402 (482)
.+..++.+.|+.++|...+++... .-+.+...+..+...+...|++++|++.+++. ...| +...+..+..++...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999998 34556778888889999999999999999988 5556 6778899999999999
Q ss_pred CHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccC
Q 011587 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464 (482)
Q Consensus 403 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 464 (482)
++++|+..++++++..| .+..+.........+..+++.|.+-++.-...++...
T Consensus 692 d~~eA~~~l~~Al~l~P--------~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 692 DMAATQHYARLVIDDID--------NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CHHHHHHHHHHHHhcCC--------CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999 6777888888888889999999988877665555433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-12 Score=110.14 Aligned_cols=341 Identities=12% Similarity=0.154 Sum_probs=235.1
Q ss_pred HHHHhhcCCCCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHH
Q 011587 62 VHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137 (482)
Q Consensus 62 a~~~~~~~~~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 137 (482)
|.-+|+..++ ...+|.++|.+ ...++|.+++++-.+..++- +..+||.+|.+-.-.. ..+++.+|..
T Consensus 196 AdL~~E~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv-~~~aFN~lI~~~S~~~-------~K~Lv~EMis 266 (625)
T KOG4422|consen 196 ADLLFETLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKV-YREAFNGLIGASSYSV-------GKKLVAEMIS 266 (625)
T ss_pred HHHHHhhcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee-eHHhhhhhhhHHHhhc-------cHHHHHHHHH
Confidence 3345555543 34577788877 77788888888888777777 8888888887754333 3678888888
Q ss_pred hCCCCchhHHHHHHHHHHhCCChhHHH----HHhccCC----CCCchhHHHHHHHHhcCCcccccchH-HHHHHHHHhhh
Q 011587 138 RGFMFNVLVATTLIHFYASNKDISSGK----KVFDQMP----MRSSATWNAMINGYCSQSKKAKDCAF-NALVLFRDMLV 208 (482)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~-~a~~~~~~m~~ 208 (482)
..+.||..|+|+++.+..+.|+++.|. +++.+|+ +|+..+|..+|..+++ .++.. .+..++.++.-
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r-----e~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR-----ESDPQKVASSWINDIQN 341 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc-----cCCchhhhHHHHHHHHH
Confidence 888888888888888888888776654 4444554 5788888888888887 55543 33444444331
Q ss_pred c--cCC---CCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhC---CCCCC--chhHHHHHHHHHHcCCChHHHHHHH
Q 011587 209 D--VSG---VKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF---YMPEN--DVFIGTALVDMYSKCGCLDNALLIF 277 (482)
Q Consensus 209 ~--~~~---~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~--~~~~~~~li~~~~~~g~~~~A~~~~ 277 (482)
. ... +.| |..-|...+..|.+..+.+.|.++..-+.... .+|+. ...-|..+..+.|.....+.-..+|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222 233 45567788899999999999988877665422 12111 2234566778888888999999999
Q ss_pred HhccC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-c--------HH-----HH
Q 011587 278 SRMRE----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG-L--------VE-----EG 339 (482)
Q Consensus 278 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~--------~~-----~a 339 (482)
+.|.. |+..+...++.+....|.++-.-++|..++..|..-+...-..++..+++.. . +. -|
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 99874 7888888889999999999999999999988886555555555555555433 1 10 11
Q ss_pred HHHH-------HHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHhcCCHh
Q 011587 340 LHLF-------DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 340 ~~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
..++ .++.+ ........+.+.-.+.+.|+.++|.++|... +..|......-++....+.++..
T Consensus 502 ad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 1122 22222 2334556777788899999999999988655 33455555556777778889999
Q ss_pred HHHHHHHHHHhcCC
Q 011587 406 LGEKVGKILLQLQP 419 (482)
Q Consensus 406 ~a~~~~~~~~~~~~ 419 (482)
.|..+++-+...+.
T Consensus 579 qA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 579 QAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHcCc
Confidence 99999999988776
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-11 Score=110.92 Aligned_cols=357 Identities=12% Similarity=0.017 Sum_probs=273.5
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
+.++-|..+|....+ +.|.+...|......--..| . .+....+|++++.. .+-....|-.....+-..||+..|
T Consensus 530 ~~~~carAVya~alq--vfp~k~slWlra~~~ek~hg-t--~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 530 PAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHG-T--RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred chHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcC-c--HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHH
Confidence 334445555555555 33534445544443333333 4 77777777777765 233455566666677777888888
Q ss_pred HHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 164 KKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
..++...-+ .+...|-.-+..... +..+++|..+|.+.. ...|+...|.--++.---.+..++|.+++
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~e-----n~e~eraR~llakar----~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFE-----NDELERARDLLAKAR----SISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-----cccHHHHHHHHHHHh----ccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 888776643 256677777777777 888999999998876 56677777777777777788899999999
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 317 (482)
++.++.- +.-...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.|...=-+.|.+-.|..++++....+..
T Consensus 675 Ee~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 675 EEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 8888876 66677888889999999999999999887765 4 4566777777778888999999999999888655
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 397 (482)
+...|-..|..-.+.|+.+.|..++.+..+ .++.+...|..-|....+.++-..+.+.+++.. -|....-.+...
T Consensus 752 -~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~l 826 (913)
T KOG0495|consen 752 -NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKL 826 (913)
T ss_pred -cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHH
Confidence 788899999999999999999999999998 577788889888888888888777888888763 355666667777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeC
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 473 (482)
+-...+++.|.+.|.++++.++ .+..+|..+...+.+.|.-++-.+++.+.... .|..+-.|.-+.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~--------d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDP--------DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCC--------ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 8888999999999999999999 78899999999999999999999999887744 344555554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-12 Score=114.03 Aligned_cols=376 Identities=9% Similarity=0.038 Sum_probs=272.0
Q ss_pred cCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCCChhh--HHHH
Q 011587 35 ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFT--YVFA 112 (482)
Q Consensus 35 g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~~l 112 (482)
+..-|....-+.-..+... |..+.|+..|-.....-+..|.+.+..++.-.-++........+ |.|..- =-.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~---~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l--~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKEL---GLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL--PSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhh---chHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC--cccchHHHHHHH
Confidence 4455555555555566677 88888988888877666677777777644444444444444332 212111 1224
Q ss_pred HHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC------CchhHHHHHHHHh
Q 011587 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR------SSATWNAMINGYC 186 (482)
Q Consensus 113 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~ 186 (482)
..++.... . .+++.+=.+.....|++-+...-+....+.....|+|.|+.+|+++.+. |..+|+.++-.-.
T Consensus 234 ~~a~~el~-q--~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 234 KKAYQELH-Q--HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHH-H--HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 45555666 6 8888888888888887777766666666777889999999999999853 5677777764332
Q ss_pred cCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc
Q 011587 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266 (482)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~ 266 (482)
.. ..-.--|..+++ -. +--+.|+.++.+-|+-.++.++|..+|+..++.+ +.....|+.+.+-|..
T Consensus 311 ~~----skLs~LA~~v~~-----id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvE 376 (559)
T KOG1155|consen 311 DK----SKLSYLAQNVSN-----ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVE 376 (559)
T ss_pred hh----HHHHHHHHHHHH-----hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHH
Confidence 20 111112233322 11 2345688888899999999999999999999998 7789999999999999
Q ss_pred CCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 267 CGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 267 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
..+...|.+-|+...+ .|-..|-.|.++|...+.+--|+-.|++..+.. +-|...+.+|..+|.+.++.++|++.|
T Consensus 377 mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999875 477889999999999999999999999998864 337889999999999999999999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCC-CC-HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIK-PD-AILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
.+... .-..+...+..|.+.|-+.++.++|...|++. |.. |. ...---|..-+.+.+++++|.......
T Consensus 456 krai~--~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 456 KRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99998 33456789999999999999999998877654 322 21 112222444567788888887766665
Q ss_pred HhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
..-++ ..++|..+++++++..
T Consensus 534 ~~~~~-------------------------e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 534 LKGET-------------------------ECEEAKALLREIRKIQ 554 (559)
T ss_pred hcCCc-------------------------hHHHHHHHHHHHHHhc
Confidence 55433 3467777777776543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=136.19 Aligned_cols=256 Identities=15% Similarity=0.084 Sum_probs=113.8
Q ss_pred HHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD-TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 181 li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
+...+.+ .|++++|+++++... ....+|+. .-|..+...+...++++.|...++++...+ +.+...+..
T Consensus 14 ~A~~~~~-----~~~~~~Al~~L~~~~--~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---~~~~~~~~~ 83 (280)
T PF13429_consen 14 LARLLYQ-----RGDYEKALEVLKKAA--QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---KANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc-----ccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc---ccccccccc
Confidence 3556667 899999999996543 23324544 444556667778899999999999999887 456777788
Q ss_pred HHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~ 336 (482)
++.. ...+++++|.++++..-+ ++...+..++..+.+.++++++..+++.+.... ..++...|..+...+.+.|+.
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 8887 799999999999887743 566677888889999999999999999987643 345777888888999999999
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
++|...+++..+. .+-|......++..+...|+.+++.++++.. ..+.|...+..+..++...|+.++|...+++.
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 9999999999984 3445778889999999999999988887766 22346667888999999999999999999999
Q ss_pred HhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.+..| .|+.....++.++...|+.++|..+.++..
T Consensus 241 ~~~~p--------~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLNP--------DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHST--------T-HHHHHHHHHHHT----------------
T ss_pred ccccc--------cccccccccccccccccccccccccccccc
Confidence 99999 899999999999999999999999887654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-11 Score=110.66 Aligned_cols=272 Identities=13% Similarity=0.055 Sum_probs=210.2
Q ss_pred HHHhCCChhHHHHHhccCCCCCchhHH-----HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 153 FYASNKDISSGKKVFDQMPMRSSATWN-----AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 153 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
-|.+.|+++.|.++++-..+.|..+-. .-+--|.+ | ..++..|.+.-+... .--.-+......-.+..
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq-g---gk~~~~aqqyad~al---n~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ-G---GKDFADAQQYADIAL---NIDRYNAAALTNKGNIA 500 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh-c---ccchhHHHHHHHHHh---cccccCHHHhhcCCcee
Confidence 467899999999999877765443322 22222333 1 334555655555443 11122333333334445
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc---CCCHHHHHHHHHHHHhcCChHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR---EKNVLTWTAMATGMAIHGKGNEA 304 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 304 (482)
...|++++|...|++.+.... . -......+.-.+-..|++++|+++|-++. ..++.+...+.+.|-...++.+|
T Consensus 501 f~ngd~dka~~~ykeal~nda--s-c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA--S-CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch--H-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 568999999999999998774 2 33333345556788999999999998776 46888888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-C
Q 011587 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-P 383 (482)
Q Consensus 305 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 383 (482)
++++-..... ++.|+.....|...|-+.|+-..|.+.+-.--+ -++.+..+...|...|....-+++|+.+|++. -
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999776654 556788899999999999999999999877766 57788999999999999999999999999998 6
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 384 IKPDAILWRSLLSAC-NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 384 ~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
+.|+..-|..|+..| .+.|++.+|.++++...+..| -+..+...|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp--------edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP--------EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc--------cchHHHHHHHHHhccccc
Confidence 789999999998876 467999999999999999999 799999999999988875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-12 Score=124.81 Aligned_cols=398 Identities=13% Similarity=0.022 Sum_probs=278.1
Q ss_pred CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCC----hhhHHH--HhcC----CCCccHHHHHHHHHHCCCCCCC-
Q 011587 37 KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN----LFLFNT--LIRC----TPPQDSVLVFAYWVSKGLLTFD- 105 (482)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~--ll~~----~~~~~a~~~~~~m~~~~~~p~~- 105 (482)
+.++++.+.|.+.|.-. |++..+..+...+...+ ..+-+. +-++ |++++|..+|.+..+.. |.+
T Consensus 267 ~~nP~~l~~LAn~fyfK---~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK---KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCc
Confidence 45677888888888777 88888888777655322 111111 1111 88888888887777644 312
Q ss_pred hhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhHHHHHhccCCCC--------
Q 011587 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK----DISSGKKVFDQMPMR-------- 173 (482)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~-------- 173 (482)
...+.-+...+.+.+ + ++.+...|+.+.+.. +-+..+...|...|+..+ ..+.|..++....++
T Consensus 342 ~l~~~GlgQm~i~~~-d--le~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRG-D--LEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred cccccchhHHHHHhc-h--HHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 334455667777777 7 888888888877763 445566666666666554 344555554443321
Q ss_pred ---------------------------------CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccC-CCCcCH--
Q 011587 174 ---------------------------------SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS-GVKPTD-- 217 (482)
Q Consensus 174 ---------------------------------~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~p~~-- 217 (482)
.+...|.+...+.. .|++..|...|.....+.. ...+|.
T Consensus 418 l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~-----~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR-----LGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH-----hcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 22333444444444 7888888888888762100 122222
Q ss_pred ----HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHH
Q 011587 218 ----TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTA 290 (482)
Q Consensus 218 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 290 (482)
.+--.+..+.-..++.+.|.++|..+.+.. |.-+..|-.++...-..+...+|..+++...+ .+...++.
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 233345566677889999999999999887 55555566666555556788899999998874 57778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHhcCCCcCHH
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCH------------AGLVEEGLHLFDNMKSKWGVEPHIK 357 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~ 357 (482)
+...+.+...+..|.+-|+...+. ...+|+++.-.|...|.. .+..++|.++|.+..+ .-+-|..
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~y 647 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMY 647 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhh
Confidence 888999999999998877766543 223577766666664432 3457889999999988 5567888
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHH
Q 011587 358 HYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (482)
.-+-+.-.++..|++.+|..+|.+. ...-...+|-.+.++|..+|++..|.++|+...+.... ..++.+...
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~------~~~~~vl~~ 721 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK------KNRSEVLHY 721 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCCHHHHHH
Confidence 8888999999999999999999987 22335567888999999999999999999999887662 257888899
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhc
Q 011587 436 LSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
|.+++.+.|.+.+|.+.+......
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999987766543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-11 Score=117.69 Aligned_cols=422 Identities=10% Similarity=-0.022 Sum_probs=212.4
Q ss_pred cCcchHHHHHHHHHHh--cCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC----------CCC
Q 011587 19 TTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC----------TPP 86 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~----------~~~ 86 (482)
++...+..++.....- ...||+.+.. -.-+.+. ++.+.|+..|....+-|+...++++.. ..+
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl---~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGI--GHCFWKL---GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhc---cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHH
Confidence 5556666666654432 3444433221 1223444 566666666665554444333333332 334
Q ss_pred ccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCC--chhHHHHHHHHHHhCCChhHHH
Q 011587 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF--NVLVATTLIHFYASNKDISSGK 164 (482)
Q Consensus 87 ~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 164 (482)
..++.++...-... |.|+...+.|.+.|...+ + +..+..+...+......- -...|--+.++|...|++++|.
T Consensus 253 ~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~-d--y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN--NENPVALNHLANHFYFKK-D--YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcc-c--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 44444444444322 335555666666665555 5 666666666665543111 1233555666666666666666
Q ss_pred HHhccCCCC--C--chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC----chHHH
Q 011587 165 KVFDQMPMR--S--SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG----LLEFG 236 (482)
Q Consensus 165 ~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a 236 (482)
..|-+..+. + +..+--+...+.+ .|+.+.+...|+... ...+-+..|...+...|...+ ..+.|
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~-----~~dle~s~~~fEkv~---k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIK-----RGDLEESKFCFEKVL---KQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHH-----hchHHHHHHHHHHHH---HhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 666554421 1 2233344555555 566666666665553 122223344444444444432 22333
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc--------CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR--------EKNVLTWTAMATGMAIHGKGNEAIRLL 308 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~ 308 (482)
..++....+.. +.|...|-.+...+-...-+.. +.+|.... .......|.+...+...|++.+|...|
T Consensus 400 ~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 400 SNVLGKVLEQT---PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHhcc---cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 33333332222 2233333333333332221111 22222111 123334444444444444555554444
Q ss_pred HH--------------------------------------------HHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 011587 309 DS--------------------------------------------MRDCGVKPN-AVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 309 ~~--------------------------------------------m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
.. ..... |+ ...|-.+.......++..+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 44 43321 11 111222221112234445555555
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH----HcCCCCCCHHHHHHHHHHHHh------------cCCHhHH
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI----MGIPIKPDAILWRSLLSACNV------------HGDVALG 407 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~p~~~~~~~l~~~~~~------------~g~~~~a 407 (482)
..... ....++..++.+...+.+...+..|.+-| .+....+|+.+.-+|...|.. .+..++|
T Consensus 554 k~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 554 KDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 55554 33334444444555566655666555533 333234666666666665442 3457789
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeCCee
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 476 (482)
+++|.++++.+| .|...=+.+.-+++..|++.+|..+|.+.++..... .-.|+-+..+|
T Consensus 632 lq~y~kvL~~dp--------kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~--~dv~lNlah~~ 690 (1018)
T KOG2002|consen 632 LQLYGKVLRNDP--------KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF--EDVWLNLAHCY 690 (1018)
T ss_pred HHHHHHHHhcCc--------chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC--CceeeeHHHHH
Confidence 999999999999 899999999999999999999999999999776632 22355554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-11 Score=117.07 Aligned_cols=291 Identities=11% Similarity=-0.029 Sum_probs=212.4
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHH-HHHHHhCCChhHHHHHhccCCC--CCchhHH--HHHHHH
Q 011587 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTL-IHFYASNKDISSGKKVFDQMPM--RSSATWN--AMINGY 185 (482)
Q Consensus 111 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~ 185 (482)
.+..+..... .|+++.|++.+....+.. +++..+..+ .....+.|+++.|.+.|.++.+ |+...+. .....+
T Consensus 87 ~~~~gl~a~~-eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 87 QTEQALLKLA-EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3444444443 444888887777655442 223333333 4444788889999988888764 3332222 224566
Q ss_pred hcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch-----hHHHHH
Q 011587 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV-----FIGTAL 260 (482)
Q Consensus 186 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-----~~~~~l 260 (482)
.. .|+++.|...++++. +.. +-+...+..+...+.+.|+++.+.+++..+.+.+..++... ..|..+
T Consensus 164 l~-----~g~~~~Al~~l~~~~--~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 164 LA-----RNENHAARHGVDKLL--EVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HH-----CCCHHHHHHHHHHHH--hcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 77 888999999998886 222 33567788888888899999999999999988875321111 133344
Q ss_pred HHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 337 (482)
+.......+.+...++++.+.+ .+......+...+...|+.++|..++++..+. .|+... .++.+....++.+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChH
Confidence 4444555667778888888764 47778888999999999999999999998874 445432 2344555669999
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
++.+..+...+ ..+-|......+...+.+.+++++|.+.|+.. ...|+..++..+...+.+.|+.++|.+++++...
T Consensus 312 ~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 312 QLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998 44556777889999999999999999999988 7789999999999999999999999999998876
Q ss_pred cC
Q 011587 417 LQ 418 (482)
Q Consensus 417 ~~ 418 (482)
.-
T Consensus 390 ~~ 391 (398)
T PRK10747 390 LT 391 (398)
T ss_pred hh
Confidence 43
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-11 Score=109.04 Aligned_cols=252 Identities=11% Similarity=0.020 Sum_probs=177.8
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
+|+++.|+++++-...+......-..+-...+....-.+++..|.++-+..+... ..+......-.+.-...|++++
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---ccCHHHhhcCCceeeecCcHHH
Confidence 6666666666666541111111111111122222223345555666555555443 2333333334444557799999
Q ss_pred HHHHHHhccCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 273 ALLIFSRMREKNVLTWTAMAT---GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 273 A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
|.+.|++....|...-.+|.. .+-..|+.++|+++|-++..- ..-+......+...|-...+...|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s- 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS- 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-
Confidence 999999999877665444433 467789999999999887543 233677778888899999999999999988876
Q ss_pred cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
-++.|+....-|.+.|-+.|+-..|.+..-+- ..-| +..+..-|..-|....-.+++...|+++.-.+|
T Consensus 587 -lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-------- 657 (840)
T KOG2003|consen 587 -LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-------- 657 (840)
T ss_pred -cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc--------
Confidence 67888999999999999999999999887655 4334 788888888888888888999999998876665
Q ss_pred CCchhHHHHHHH-HHhCCCchHHHHHHHHhHhc
Q 011587 428 CTSEDFVALSNI-YASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 428 ~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 459 (482)
+..-|..++.. +.+.|++.+|..++++..++
T Consensus 658 -~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 -NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred -cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77788766655 45789999999999988654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-12 Score=120.86 Aligned_cols=276 Identities=11% Similarity=0.012 Sum_probs=206.2
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHh--hhccCcchhhhHHHHHHHHHHhCCCCchhHHH--HHHHHHHhCCC
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC--ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT--TLIHFYASNKD 159 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 159 (482)
|++++|.+.+....+..- ++. .+.++.+. .+.| + ++.|.+.+.++.+. .|+...+. .....+...|+
T Consensus 98 Gd~~~A~k~l~~~~~~~~---~p~-l~~llaA~aA~~~g-~--~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE---QPV-VNYLLAAEAAQQRG-D--EARANQHLERAAEL--ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCHHHHHHHHHHHHhccc---chH-HHHHHHHHHHHHCC-C--HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCC
Confidence 999999988887666431 223 33333333 4444 5 99999999999875 55554333 34678899999
Q ss_pred hhHHHHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH-------HHHHHHHHHhhc
Q 011587 160 ISSGKKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD-------TTMVCVLSVSSQ 229 (482)
Q Consensus 160 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~l~~~~~~ 229 (482)
++.|.+.++.+.+ | ++.....+...|.+ .|++++|.+++..+. +.+..++. .+|..++.....
T Consensus 169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-----~gdw~~a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-----TGAWSSLLDILPSMA--KAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----HHhHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998864 3 67788889999999 999999999999998 55544322 133333444444
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011587 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 309 (482)
..+.+...++++.+.+.- +.++.....+...+...|+.++|.+.+++..+.....--.++.+....++++++.+..+
T Consensus 242 ~~~~~~l~~~w~~lp~~~---~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKT---RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred hcCHHHHHHHHHhCCHHH---hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 455566666666654433 55788889999999999999999999988875322222334455556799999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
...+... -|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 319 QQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987743 36667888899999999999999999999874 799999999999999999999999998864
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-11 Score=108.81 Aligned_cols=322 Identities=11% Similarity=0.049 Sum_probs=189.9
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC--CCCchhHHHHHHHHhcCCcccccchHHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAMINGYCSQSKKAKDCAFNALVL 202 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~ 202 (482)
+..|.++|+.-.+. .|+..+|++.|+.=.+-+.++.|..+++... .|++.+|--..+--.+ .|+...|..+
T Consensus 157 i~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k-----~g~~~~aR~V 229 (677)
T KOG1915|consen 157 IAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEK-----HGNVALARSV 229 (677)
T ss_pred cHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHh-----cCcHHHHHHH
Confidence 55555555554433 4555555555555555555555555555432 3455555444444444 4555555555
Q ss_pred HHHhhhccCCC-CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH----
Q 011587 203 FRDMLVDVSGV-KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF---- 277 (482)
Q Consensus 203 ~~~m~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~---- 277 (482)
|..... .-|- .-+...+.+....-.+...++.|..+|+..+++-.. ......|..+...--+-|+.....+..
T Consensus 230 yerAie-~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIE-FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 544431 0010 001112222222223334444555555554443210 011333444443333444443333322
Q ss_pred ----HhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---hccCcHHHHH
Q 011587 278 ----SRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA-------VTFTSLFAAC---CHAGLVEEGL 340 (482)
Q Consensus 278 ----~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~~~~~~a~ 340 (482)
+.+.+. |-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|..+=.++ ....+++.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 112111 4456766777777788999999999998876 45522 1222222222 2467888889
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHH----hccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLL----GRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
++++...+ -++....||.-+--.| .++.++..|.+++... |.-|-..+|...|..-.+.++++....++++.+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99988887 5666666666555444 3677888898888877 888888889888888888899999999999999
Q ss_pred hcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCc
Q 011587 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466 (482)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 466 (482)
+-+| -|..+|...+..-...|+++.|..+|+-..+....-.|.
T Consensus 465 e~~P--------e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 465 EFSP--------ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred hcCh--------HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 9888 688888888888888888888888888777665444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-11 Score=116.12 Aligned_cols=297 Identities=11% Similarity=-0.012 Sum_probs=206.2
Q ss_pred hHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCChhHHHHHhccCCC--CCc--hhHHHHH
Q 011587 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV-LVATTLIHFYASNKDISSGKKVFDQMPM--RSS--ATWNAMI 182 (482)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li 182 (482)
....+..+..... .|+++.|++.+....+. .|++ ..+-.....+...|+.+.|.+.|++..+ |+. ...-...
T Consensus 84 ~~~~~~~glla~~-~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 84 AQKQTEEALLKLA-EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 4445555555555 56688888888877665 3443 3334445677788888888888887542 332 2333346
Q ss_pred HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch-----hHH
Q 011587 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV-----FIG 257 (482)
Q Consensus 183 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-----~~~ 257 (482)
..+.. .|+++.|...++.+. ... +-+...+..+...+...|+++.+.+.+..+.+.+..++.+. ..+
T Consensus 161 ~l~l~-----~~~~~~Al~~l~~l~--~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (409)
T TIGR00540 161 RILLA-----QNELHAARHGVDKLL--EMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE 232 (409)
T ss_pred HHHHH-----CCCHHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 66777 888999999998886 332 33566788888888999999999999999988875221111 111
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhcc
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF-TSLFAACCHA 333 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~ 333 (482)
..++..-......+...+.++...+ .+...+..+...+...|+.++|.+++++..+.........+ ..........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence 1112111222334455556666653 47788889999999999999999999999886432221111 1222233446
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHc--C-CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHI--KHYSCIVDLLGRAGHLEEAYNFIMG--I-PIKPDAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
++.+.+.+.++...+. .+-|. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.
T Consensus 313 ~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7888999999988874 33334 6677889999999999999999994 3 66899999999999999999999999
Q ss_pred HHHHHHHhc
Q 011587 409 KVGKILLQL 417 (482)
Q Consensus 409 ~~~~~~~~~ 417 (482)
+++++....
T Consensus 391 ~~~~~~l~~ 399 (409)
T TIGR00540 391 AMRQDSLGL 399 (409)
T ss_pred HHHHHHHHH
Confidence 999987653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.4e-13 Score=123.96 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=225.2
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC------CCchhHHHHHHHHhcCCcccccchHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM------RSSATWNAMINGYCSQSKKAKDCAFN 198 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~ 198 (482)
..+|..+|..+... +.-+..+...+..+|...+++++|+.+|+.+.+ .+...|.+.+-.+-+ . -
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~----v 404 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----E----V 404 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----h----H
Confidence 77888888884443 344557778889999999999999999998874 277889988876544 1 1
Q ss_pred HHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 011587 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278 (482)
Q Consensus 199 a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (482)
++..+.+-. -.--+-.+.+|.++.++|.-.++.+.|.+.|+++.+.+ +....+|+.+..-+.....+|.|...|+
T Consensus 405 ~Ls~Laq~L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 405 ALSYLAQDL--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHHH--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 223332221 11223467899999999999999999999999999988 7789999999999999999999999999
Q ss_pred hccCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC
Q 011587 279 RMREKNVLTWTA---MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355 (482)
Q Consensus 279 ~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 355 (482)
.....|...||+ +...|.++++++.|+-.|++..+-+.. +.+....+...+-+.|+.++|+++++++.. --+-|
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn 556 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKN 556 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCC
Confidence 999877766655 567799999999999999999886543 667777888888999999999999999987 23445
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+..--..+..+...++.++|+..+++. .+.| +...+..+...|.+.|+.+.|..-|..+.+.+|
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 555556677788899999999999999 5566 556778888999999999999999999999999
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=127.24 Aligned_cols=211 Identities=15% Similarity=0.056 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC--CCCchhHHHHHHHHhcCCcccccchHHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAMINGYCSQSKKAKDCAFNALVL 202 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~ 202 (482)
.+.|.+.++++.+.+ +-++..+..++.. ...+++++|.++++..- .++...+..++..+.. .++++++..+
T Consensus 60 ~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~~ 132 (280)
T PF13429_consen 60 YDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR-----LGDYDEAEEL 132 (280)
T ss_dssp ------------------------------------------------------------H-HHH-----TT-HHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHH-----HhHHHHHHHH
Confidence 666666666665543 2244445555555 45566666665555432 1344445555555555 5556666666
Q ss_pred HHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC
Q 011587 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282 (482)
Q Consensus 203 ~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 282 (482)
++.... ....+++...|..+...+.+.|+.++|.+.++++++.. |.+..+...++..+...|+.+++.++++...+
T Consensus 133 l~~~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 133 LEKLEE-LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD---PDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555431 22233445555555555566666666666666666555 44555555556666656655554444444332
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 011587 283 ---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347 (482)
Q Consensus 283 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 347 (482)
.|...+..+..+|...|++++|...|++..... +.|......+..++...|+.++|.++..++.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 344445555555555556666666655555432 2245555555555555565555555555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-11 Score=101.03 Aligned_cols=286 Identities=12% Similarity=0.073 Sum_probs=201.5
Q ss_pred hHHHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhC-CCCc--hhHHHHHHH
Q 011587 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG-FMFN--VLVATTLIH 152 (482)
Q Consensus 76 ~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~ 152 (482)
..|.+++ +++++|.++|-+|.+.. |.+..+..++-+.|.+.| . .+.|..+++.+.++. ...+ ..+...|..
T Consensus 42 GlNfLLs-~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRG-E--vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 42 GLNFLLS-NQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRG-E--VDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHHhh-cCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcc-h--HHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3455555 89999999999999843 424445556666777666 7 999999999998762 1111 234566778
Q ss_pred HHHhCCChhHHHHHhccCCC-C--CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH----HHHHHHHH
Q 011587 153 FYASNKDISSGKKVFDQMPM-R--SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD----TTMVCVLS 225 (482)
Q Consensus 153 ~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~~~~~l~~ 225 (482)
-|...|-+|.|+++|..+.+ + -..+...|+..|-. ..+|++|+++-+++. ..+-++.. ..|.-+..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~-----treW~KAId~A~~L~--k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA-----TREWEKAIDVAERLV--KLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH-----hhHHHHHHHHHHHHH--HcCCccchhHHHHHHHHHHH
Confidence 89999999999999999876 3 34567788999999 999999999998877 44444432 23445555
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCH----HHHHHHHHHHHhcCCh
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV----LTWTAMATGMAIHGKG 301 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~ 301 (482)
.+....+.+.|...+.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|...|+.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 189 QALASSDVDRARELLKKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 6666778888888888888887 56667667788888888888888888888887554 3566777888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc---cCCHHHHHHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR---AGHLEEAYNF 378 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 378 (482)
++....+.++.+....++. -..+-..-....-.+.|..++.+-.++ .|+...+..+|+.-.. -|...+.+.+
T Consensus 266 ~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 266 AEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred HHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHH
Confidence 8888888888776433332 233333333334445555555554443 6888888888876543 3344555555
Q ss_pred HHcC
Q 011587 379 IMGI 382 (482)
Q Consensus 379 ~~~~ 382 (482)
++.|
T Consensus 341 lr~m 344 (389)
T COG2956 341 LRDM 344 (389)
T ss_pred HHHH
Confidence 5555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-11 Score=114.94 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=247.1
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccC---CCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM---PMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
+++|.+++.++++.. +.+...|..|..+|-..|+.+++...+=-. ...|...|-.+.....+ .|++++|.-
T Consensus 155 ~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-----~~~i~qA~~ 228 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-----LGNINQARY 228 (895)
T ss_pred HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-----cccHHHHHH
Confidence 999999999999985 557889999999999999999998876432 34477888888888888 999999999
Q ss_pred HHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH----HHHHHHcCCChHHHHHHH
Q 011587 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA----LVDMYSKCGCLDNALLIF 277 (482)
Q Consensus 202 ~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~----li~~~~~~g~~~~A~~~~ 277 (482)
.|.+.. . --+++...+---...|-+.|+...|..-|.++..... +.+..-+.. .++.+...++-+.|.+.+
T Consensus 229 cy~rAI--~-~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 229 CYSRAI--Q-ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHH--h-cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999986 2 2244555666677889999999999999999988763 444443433 456677788888888888
Q ss_pred HhccC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCCCHHHHHH
Q 011587 278 SRMRE-----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG---------------------------VKPNAVTFTS 325 (482)
Q Consensus 278 ~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------------------~~p~~~~~~~ 325 (482)
+.... -+...++.++..|.+...++.+......+.... ..++... ..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 87764 245678899999999999999999988886621 1122222 13
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCC--cCHHHHHHHHHHHhccCCHHHHHHHHHcCCC-C--CCHHHHHHHHHHHHh
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVE--PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI-K--PDAILWRSLLSACNV 400 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--p~~~~~~~l~~~~~~ 400 (482)
+.-++.+....+....+...+..+ .+. -+...|.-+.++|...|++.+|+.+|..+.. . -+...|-.+..+|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 344455666666666666666664 533 3466889999999999999999999999821 2 256789999999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 401 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.|.+++|.+.++.++...| .+...-.+|...+.+.|+.|+|.+.++.|.
T Consensus 462 l~e~e~A~e~y~kvl~~~p--------~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAP--------DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCC--------CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999 788899999999999999999999999887
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-11 Score=108.40 Aligned_cols=351 Identities=10% Similarity=0.028 Sum_probs=243.4
Q ss_pred CCCccHHHHHHHHHHCCCCCCC-hhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChh
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFD-DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDIS 161 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 161 (482)
|++++|+++|.+.++.. | + +..|.....+|...| + |+++.+--...++. .|+ ..++..-.+++-..|+++
T Consensus 129 kkY~eAIkyY~~AI~l~--p-~epiFYsNraAcY~~lg-d--~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELC--P-DEPIFYSNRAACYESLG-D--WEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred ccHHHHHHHHHHHHhcC--C-CCchhhhhHHHHHHHHh-h--HHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHH
Confidence 99999999999999854 6 6 666777777777888 8 99888877777665 444 345555666666777777
Q ss_pred HHHHHh------c-------------------------cCC--C----CCchhHHHHHHHHhcCCc------c--c----
Q 011587 162 SGKKVF------D-------------------------QMP--M----RSSATWNAMINGYCSQSK------K--A---- 192 (482)
Q Consensus 162 ~A~~~~------~-------------------------~~~--~----~~~~~~~~li~~~~~~~~------~--~---- 192 (482)
+|+.=. + .+. + |+....++....+..... . .
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l 280 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL 280 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence 665311 1 111 0 122112222211111000 0 0
Q ss_pred -----------ccchHHHHHHHHHhhh-ccCCCCcC---------HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCC
Q 011587 193 -----------KDCAFNALVLFRDMLV-DVSGVKPT---------DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251 (482)
Q Consensus 193 -----------~~~~~~a~~~~~~m~~-~~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 251 (482)
...+..|...+.+-.. .......+ ..+.......+.-.|+.-.+..-|+..++.. +
T Consensus 281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~---~ 357 (606)
T KOG0547|consen 281 AEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD---P 357 (606)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC---c
Confidence 0112222222221110 00001111 2222222333455688889999999999887 4
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
.+...|--+..+|....+.++....|+.... .|..+|..-...+.-.+++++|..=|++.+..... +...|-.+..
T Consensus 358 ~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~ 436 (606)
T KOG0547|consen 358 AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCC 436 (606)
T ss_pred ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH
Confidence 4455577888899999999999999998874 46778888888888889999999999999887533 6677878888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-------HHH--HHHHHHHH
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-------AIL--WRSLLSAC 398 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~--~~~l~~~~ 398 (482)
+..+.+.+++++..|++.++ .++-.+..|+.....+...+++++|.+.|+.. .+.|+ +.. -..++. +
T Consensus 437 a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~ 513 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-L 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-h
Confidence 88899999999999999999 57778889999999999999999999999876 33333 221 122221 2
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.=.+++..|..+++++++.+| .....|..|.....+.|+.++|+++|++-.
T Consensus 514 qwk~d~~~a~~Ll~KA~e~Dp--------kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 514 QWKEDINQAENLLRKAIELDP--------KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred chhhhHHHHHHHHHHHHccCc--------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 224899999999999999999 678899999999999999999999998743
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-12 Score=120.24 Aligned_cols=280 Identities=12% Similarity=-0.028 Sum_probs=219.4
Q ss_pred ChhHHHHHhccCCCC--C-chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHH
Q 011587 159 DISSGKKVFDQMPMR--S-SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235 (482)
Q Consensus 159 ~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 235 (482)
+..+|...|..++.. | ......+.++|.. .+++++|.++|+..++.+.-..-+..+|.+.+-.+-+. .
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE-----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFE-----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----V 404 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----H
Confidence 467888899886642 3 3455667789999 99999999999999832222333677888877665332 2
Q ss_pred HHHHH-HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 236 GACVH-GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 236 a~~~~-~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
+..++ +.+.+.. +..+.+|.++.+.|...++.+.|++.|++..+- ...+|+.+..-+.....+|+|...|+..
T Consensus 405 ~Ls~Laq~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 405 ALSYLAQDLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 22222 2333444 678899999999999999999999999999863 5578888888899999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHH
Q 011587 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAI 389 (482)
Q Consensus 312 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 389 (482)
...... +-..|.-+...|.+.++++.|+-.|+++.+ --+.+.+....+...+.+.|+.++|++++++. ...| |+.
T Consensus 482 l~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 482 LGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 654211 223445566789999999999999999987 34556777888888999999999999999998 4444 554
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.--..+..+...+++++|+..++++.+.-| .+...|..+...|.+.|+.+.|+.-|.-+.+...
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP--------~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVP--------QESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCc--------chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 444456667788999999999999999999 7899999999999999999999998888775444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-10 Score=109.01 Aligned_cols=417 Identities=13% Similarity=0.061 Sum_probs=293.2
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCC---CChhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP---PNLFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~----~~~~~a~~ 91 (482)
|+.++|..|+.+..+.. +....-+..|...|-.. |+.+.+...+-.... .|...|-.+-.. |++++|.-
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqr---Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQR---GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHc---ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999998876 33445566788889988 999999887655432 233344433332 99999999
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHH----HHHHHHHhCCChhHHHHHh
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT----TLIHFYASNKDISSGKKVF 167 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~ 167 (482)
+|.+.++.. |.+...+--=...|-+.| + ...|..-+.++.....+.|..-.. ..+..+...++-+.|.+.+
T Consensus 229 cy~rAI~~~--p~n~~~~~ers~L~~~~G-~--~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 229 CYSRAIQAN--PSNWELIYERSSLYQKTG-D--LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHhcC--CcchHHHHHHHHHHHHhC-h--HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999865 546555555566777777 7 999999999999874322323232 3455677777778898888
Q ss_pred ccCCC-----CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCC---------------------------CCc
Q 011587 168 DQMPM-----RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG---------------------------VKP 215 (482)
Q Consensus 168 ~~~~~-----~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~p 215 (482)
+.... -+...+|.++..+.+ ...++.+......+. ... +.+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~-----~~q~d~~~~~i~~~~--~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLK-----NKQSDKALMKIVDDR--NRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHH-----hHHHHHhhHHHHHHh--ccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 87653 256678889999999 888999998888876 311 122
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTAM 291 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 291 (482)
+... ..++-++...+..+....+..........|..+...|.-+..+|...|++.+|+.+|..+.. .+...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 23444556677777788888888888866677888999999999999999999999999875 367799999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH-------hcCCCcCHHHHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS-------KWGVEPHIKHYSCIVD 364 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~ 364 (482)
..+|...|.++.|.+.|++..... +-+...-..|-..+.+.|+.++|.+++..+.. ..+..|..........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999999999998763 22344555677778899999999999988542 1245555555555556
Q ss_pred HHhccCCHHHHHHHHHcC--------------------------------------------------------------
Q 011587 365 LLGRAGHLEEAYNFIMGI-------------------------------------------------------------- 382 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-------------------------------------------------------------- 382 (482)
.+...|+.++=.+...+|
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 666666665532221111
Q ss_pred ----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc----hhHHHHHHHHHhCCCchHHHHH
Q 011587 383 ----PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS----EDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 383 ----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
++.-+ -..+..++.++++.+.+++|+.+...+.+...- .-+. ..-...+.+....+++..|...
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f------~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF------FQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh------hccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 00000 023345566778888888888888888775430 0122 2334556677788888888888
Q ss_pred HHHhHhc
Q 011587 453 RKQMKVK 459 (482)
Q Consensus 453 ~~~m~~~ 459 (482)
++.|...
T Consensus 689 lR~~i~~ 695 (895)
T KOG2076|consen 689 LRSVITQ 695 (895)
T ss_pred HHHHHHH
Confidence 8887654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-10 Score=102.55 Aligned_cols=252 Identities=11% Similarity=0.031 Sum_probs=179.6
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD- 271 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~- 271 (482)
..+.+++..-..... ..|.+-+...-+....+.-...++++|+.+|+.+.+...=--.|..+|..++-+--....+.
T Consensus 240 l~q~~e~~~k~e~l~--~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 240 LHQHEEALQKKERLS--SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHH--hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 445555555555554 44444444444444444555666666666666666654110113334444332221111111
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 272 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
.|..++ .+.+--+.|..++.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++.+.+ -
T Consensus 318 LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i 393 (559)
T KOG1155|consen 318 LAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--I 393 (559)
T ss_pred HHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--c
Confidence 111111 111223345555666777788899999999999887543 556777788889999999999999999998 4
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 429 (482)
.+.|-..|-.|.++|.-.+.+.-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|.++...+. .+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--------te 465 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--------TE 465 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------cc
Confidence 5678889999999999999999999999998 6777 888999999999999999999999999999888 68
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 430 SEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
...+..|.+.|.+.++.++|...+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999998887664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.1e-10 Score=99.02 Aligned_cols=410 Identities=8% Similarity=0.041 Sum_probs=299.4
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC----CCChhhHHHHhcC---CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD----PPNLFLFNTLIRC---TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ll~~---~~~~~a~~ 91 (482)
++...|..|++....-. ..+...+-..+.+=.++ .....|+.+++... +-|..-|-.+.-- |+...|.+
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emkn---k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKN---KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhh---hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 45567777777776544 33444444455555666 78888999988754 3333333332222 99999999
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
+|+...+ ..| +...|.+.++.=.+.. . ++.|..+++..+-- .|+..+|-.....=.++|.+..|..+|+...
T Consensus 163 iferW~~--w~P-~eqaW~sfI~fElRyk-e--ieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 163 IFERWME--WEP-DEQAWLSFIKFELRYK-E--IERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHc--CCC-cHHHHHHHHHHHHHhh-H--HHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999987 568 9999999999999988 8 99999999998854 6899999999999999999999999998765
Q ss_pred CC------CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC--HHHHHHHHHHhhccCchHHHHHH----
Q 011587 172 MR------SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT--DTTMVCVLSVSSQLGLLEFGACV---- 239 (482)
Q Consensus 172 ~~------~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~---- 239 (482)
+. +...++++..--.+ +..+++|--+|+-.. ..++-+ ...|......--+-|+....+..
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~-----qkE~ERar~iykyAl---d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEER-----QKEYERARFIYKYAL---DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 31 23344444444445 777888888888875 233333 34555555444455554444332
Q ss_pred ----HHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH---HHHHHHH--------HHHHhcCChH
Q 011587 240 ----HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV---LTWTAMA--------TGMAIHGKGN 302 (482)
Q Consensus 240 ----~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li--------~~~~~~~~~~ 302 (482)
++.+++.+ +.|-.+|--.+..-...|+.+...++|++... |.. ..|.--| -.=....+.+
T Consensus 307 Rk~qYE~~v~~n---p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 307 RKFQYEKEVSKN---PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhHHHHHHHhC---CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455555 66778888888888899999999999999874 211 1222211 1123567899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAAC----CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 378 (482)
.+.++++..++. ++-...||..+=-.| .++.++..|.+++.... |..|...+|...|..=.+.++++.+..+
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 999999998884 444566766554444 36789999999998876 6789999999999999999999999999
Q ss_pred HHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 379 IMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 379 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
+++. ...| +-.+|......-...|+.+.|..+|+-++.... +......+...|+.-...|.++.|..+++.+
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~------ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA------LDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc------cccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9988 5566 778999888888899999999999998887543 0122445667777778899999999999998
Q ss_pred HhcCC
Q 011587 457 KVKRV 461 (482)
Q Consensus 457 ~~~~~ 461 (482)
.+..-
T Consensus 534 L~rt~ 538 (677)
T KOG1915|consen 534 LDRTQ 538 (677)
T ss_pred HHhcc
Confidence 86543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-09 Score=99.33 Aligned_cols=258 Identities=14% Similarity=0.058 Sum_probs=205.6
Q ss_pred hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch
Q 011587 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254 (482)
Q Consensus 176 ~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 254 (482)
.+|+.-...|.+ .+.++-|..+|.... .+-| +...|......--..|..+....+++++...- +...
T Consensus 517 ~tw~~da~~~~k-----~~~~~carAVya~al----qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~---pkae 584 (913)
T KOG0495|consen 517 STWLDDAQSCEK-----RPAIECARAVYAHAL----QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC---PKAE 584 (913)
T ss_pred hHHhhhHHHHHh-----cchHHHHHHHHHHHH----hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---Ccch
Confidence 455555566666 666777777777764 3344 45566666666667788888888888888776 5667
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 331 (482)
..|......+-..||+..|..++....+ .+...|-.-+..-..+.+++.|..+|.+.... .|+...|..-+...-
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 7777788888888999999999988864 35567888888889999999999999988764 567777766666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
-.++.++|.+++++..+ .++.-...|-.+.+.+-+.++++.|.+.|..- ..-| .+..|-.|...--+.|.+-+|..
T Consensus 663 ~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 67899999999999998 45555678888889999999999998888765 4445 56778878777788899999999
Q ss_pred HHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
++++..-.+| .+...|...+.+-.+.|+.+.|..++.+..
T Consensus 741 ildrarlkNP--------k~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 741 ILDRARLKNP--------KNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHhcCC--------CcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 899999999999999999999998876655
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-11 Score=112.92 Aligned_cols=282 Identities=10% Similarity=-0.003 Sum_probs=201.0
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhh-HHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCch--hHHHHHHHHHHhCCCh
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFT-YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV--LVATTLIHFYASNKDI 160 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 160 (482)
|+++.|.+.+....+.. | ++.. +-....+..+.| + .+.|.+.+.+..+.. |+. .........+...|++
T Consensus 98 g~~~~A~~~l~~~~~~~--~-~~~~~~llaA~aa~~~g-~--~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHA--A-EPVLNLIKAAEAAQQRG-D--EARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred CCHHHHHHHHHHHhhcC--C-CCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 99999999999887754 4 3332 333344555555 6 999999999998763 443 3444468888999999
Q ss_pred hHHHHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh---hccCchH
Q 011587 161 SSGKKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS---SQLGLLE 234 (482)
Q Consensus 161 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~---~~~~~~~ 234 (482)
+.|.+.++.+.+ | +...+..+...+.. .|++++|.+.+..+. +.++.+.......-..+. ...+..+
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-----~~d~~~a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIR-----SGAWQALDDIIDNMA--KAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HhhHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999874 3 66788889999999 999999999999998 665443322211111111 2222222
Q ss_pred HHHHHHHHHHHhCCC-CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHH---HHHHHHHHHhcCChHHHHHHH
Q 011587 235 FGACVHGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLT---WTAMATGMAIHGKGNEAIRLL 308 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~-p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~ 308 (482)
...+.+..+.+.... -+.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 233344444443210 024788899999999999999999999999875 44432 122222334457888999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 309 DSMRDCGVKPNA--VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 309 ~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
++..+.. +-|. ....++...+.+.|++++|.+.|+.... ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887752 2233 5566888899999999999999996444 245789999999999999999999999999864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-10 Score=99.07 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=181.0
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC----CchhHHHHHHHHhcCCcccccchH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR----SSATWNAMINGYCSQSKKAKDCAF 197 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~~~~~ 197 (482)
.|++.+|+++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+.-++ +...+-+....... .|+..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-----~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-----RRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-----CCCch
Confidence 333555555555444443221 223333334444445555555555444322 22233333334444 44455
Q ss_pred HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCC-----CchhHHHHHHHHHHcCCChHH
Q 011587 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE-----NDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|..-+.... .. -+-++........+|.+.|++..+..+...+.+.+...+ ....+|+.+++-....+..+.
T Consensus 171 aA~~~v~~ll--~~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 171 AARENVDQLL--EM-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred hHHHHHHHHH--Hh-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 5554444443 11 112344445555555555555555555555555554211 123456666666666666666
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 273 ALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 273 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
-...++.... .++..-.+++.-+.+.|+.++|.++.++..+++..|+ . ...-.+.+.++...-++..+...+.
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh
Confidence 6667777763 4667777788888999999999999999988877666 2 2333456778888888888888885
Q ss_pred cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++..| ..+.+|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|+..+|.++.++....-.
T Consensus 324 h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 324 HPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred CCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 55555 68888999999999999999999977 7889999999999999999999999999999885444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-09 Score=96.40 Aligned_cols=282 Identities=10% Similarity=0.051 Sum_probs=218.6
Q ss_pred CCChhHHHHHhccCCCC---CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch
Q 011587 157 NKDISSGKKVFDQMPMR---SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~ 233 (482)
.|+|..|++...+-.+. ....|-.-..+--. .|+.+.+-..+.+.- +..-.++...+-+........|+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~q-----rgd~~~an~yL~eaa--e~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQ-----RGDEDRANRYLAEAA--ELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHh-----cccHHHHHHHHHHHh--ccCCCchHHHHHHHHHHHHhCCCc
Confidence 69999999999876543 33344444555666 899999999999986 444456667777888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC-----------HHHHHHHHHHHHhcCChH
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-----------VLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~ 302 (482)
+.|..-.+++.+.+ +..+.+......+|.+.|++.....++.++.+.. ..+|+.++.-....+..+
T Consensus 170 ~aA~~~v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999988 7788999999999999999999999999998631 246777777666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.-...|+..-.. .+-++..-.+++.-+...|+.++|.++..+..++ +..|+.. .+ -.+.+.++...-++..++.
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHH
Confidence 666677766443 3445566677888899999999999999999995 7776622 22 2345666666655555544
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 383 --PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 383 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
..+-++..+.+|...|.+.+.+.+|...|+..++..+ +..+|..+..++.+.|+.++|.++.++-...-
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP---------SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 1122447788899999999999999999998888776 78999999999999999999999998876444
Q ss_pred Ccc
Q 011587 461 VET 463 (482)
Q Consensus 461 ~~~ 463 (482)
..|
T Consensus 392 ~~~ 394 (400)
T COG3071 392 RQP 394 (400)
T ss_pred cCC
Confidence 433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-10 Score=101.37 Aligned_cols=197 Identities=15% Similarity=0.067 Sum_probs=146.3
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
....+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 345666777777778888888887777653 2456677777778888888888888888776543 245566677777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
+...|++++|...+++..+....+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888763122234456667778888888888888888877 3334 456777788888888999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
...++++.+..+ .+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYN--------QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCC--------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998888755 5677777888888888999999888877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-10 Score=94.60 Aligned_cols=295 Identities=12% Similarity=0.073 Sum_probs=219.4
Q ss_pred hhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC-CCch------hHH
Q 011587 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM-RSSA------TWN 179 (482)
Q Consensus 107 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~ 179 (482)
.+|..=++.+... + .++|..+|-+|.+.. +-+..+.-+|.+.|-+.|.+|.|+.+-+.+.+ ||.. +.-
T Consensus 37 r~Yv~GlNfLLs~--Q--~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 37 RDYVKGLNFLLSN--Q--PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred HHHHhHHHHHhhc--C--cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3455555554443 4 889999999999853 44566777899999999999999999998765 4332 233
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc----hh
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND----VF 255 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~ 255 (482)
.|..-|.. .|-+++|+.+|..+. +.+ .--......|+..|....+|++|..+-+++.+.+- .+. ..
T Consensus 112 qL~~Dym~-----aGl~DRAE~~f~~L~--de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAq 181 (389)
T COG2956 112 QLGRDYMA-----AGLLDRAEDIFNQLV--DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQ 181 (389)
T ss_pred HHHHHHHH-----hhhhhHHHHHHHHHh--cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHH
Confidence 45666777 999999999999987 433 23356788999999999999999999999998874 222 23
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
.|.-|...+....+.+.|..++.+..+. .+.+--.+...+...|++.+|.+.++...+.+..--..+...|..+|.+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 4556667777788999999999998753 3445556667889999999999999999998766667788899999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHHh---cCCHhHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI-MGIPIKPDAILWRSLLSACNV---HGDVALGE 408 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~ 408 (482)
.|+.++....+.++.+. . ++...-..+.+.-....-.+.|...+ +...-+|+...+..+|..-.. .|...+..
T Consensus 262 lg~~~~~~~fL~~~~~~-~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 262 LGKPAEGLNFLRRAMET-N--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred hCCHHHHHHHHHHHHHc-c--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhH
Confidence 99999999999999884 3 33333344444444444555665554 555778999999999987543 34456666
Q ss_pred HHHHHHHhcCC
Q 011587 409 KVGKILLQLQP 419 (482)
Q Consensus 409 ~~~~~~~~~~~ 419 (482)
..++.|+....
T Consensus 339 ~~lr~mvge~l 349 (389)
T COG2956 339 DLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHHHHH
Confidence 67777765433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-10 Score=110.99 Aligned_cols=267 Identities=10% Similarity=-0.000 Sum_probs=188.1
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhh---------ccCchHHHHHHHHHH
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSS---------QLGLLEFGACVHGYM 243 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~ 243 (482)
+...|...+.+.....+...+..++|+..|++.. ...|+ ...|..+..++. ..+++++|...++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al----~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV----NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH----hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 5566666666643211112456789999999987 44564 445555544433 234588999999999
Q ss_pred HHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 011587 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320 (482)
Q Consensus 244 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 320 (482)
.+.+ |.+...+..+...+...|++++|...|++..+ | +...+..+..++...|++++|...+++..+.... +.
T Consensus 331 l~ld---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 331 TELD---HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HhcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 9988 77888999999999999999999999999874 4 4667888999999999999999999999887543 22
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH-HHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI-LWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~ 398 (482)
..+..++..+...|++++|...++++.+. .-+-+...+..+..++...|+.++|...+.++ ...|+.. ..+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 23334444566689999999999998873 22224556777888899999999999999987 4455443 445555566
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
...| +.|...++++.+.... .+....+ +...|.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~------~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQR------IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhH------hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7666 4788878877664331 1222222 44555566666666655 7776554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-12 Score=81.44 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-10 Score=96.82 Aligned_cols=199 Identities=17% Similarity=0.095 Sum_probs=164.8
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAM 291 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 291 (482)
.....+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 345677788899999999999999999998876 56778889999999999999999999998874 356678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
...+...|++++|...+++.......| ....+..+..++...|++++|...+.+..+. .+.+...+..+...+...|
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcC
Confidence 899999999999999999998753222 3456667788899999999999999999883 3445678888999999999
Q ss_pred CHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 371 HLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
++++|.+.+++. .. +.+...+..+...+...|+.+.|..+.+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999887 32 3356677777888889999999999988876653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-09 Score=101.82 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-----CCCCCCch-hHHHHHHHHHHcCCChHHHHHHHHhccC-------
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-----FYMPENDV-FIGTALVDMYSKCGCLDNALLIFSRMRE------- 282 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 282 (482)
-..++..+...|...|+++.|+..+++.++. |.. .+.. ...+.+...|...+++.+|..+|+++..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 3457777999999999999999999998775 210 1222 2344577899999999999999998863
Q ss_pred ---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 283 ---K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRD-----CGVK-PNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 283 ---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
| -..+++.|..+|.+.|++++|...+++..+ .|.. |.. ..++.+...|+..+++++|..+++...+...
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1 235788888899999999999888887642 1222 222 3456677788899999999999998776432
Q ss_pred --CCc----CHHHHHHHHHHHhccCCHHHHHHHHHcC---------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 352 --VEP----HIKHYSCIVDLLGRAGHLEEAYNFIMGI---------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 352 --~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
..+ -..+++.|...|...|++++|.+++++. +..+ ....++.|...|.+.+++++|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 222 2468999999999999999999999876 1222 24567888899999999999999999876
Q ss_pred hcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
...+..+ ++-+....+|..|+.+|.+.|+++.|.++.+...
T Consensus 437 ~i~~~~g-~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCG-PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhC-CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5332100 0111335688899999999999999999988775
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-10 Score=107.96 Aligned_cols=263 Identities=14% Similarity=0.054 Sum_probs=177.5
Q ss_pred HHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccC
Q 011587 91 LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170 (482)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 170 (482)
.++..+...|+.| +..||.++|.-|+..| + .+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~P-nRvtyqsLiarYc~~g-d--ieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGILP-NRVTYQSLIARYCTKG-D--IEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCCC-chhhHHHHHHHHcccC-C--Ccccc-chhhhhcccccccchhHHHHHhcccccccccCCC------
Confidence 4667788999999 9999999999999999 8 99888 9999988888888899999999999999988776
Q ss_pred CCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhh--ccCCCCcCHHHHHHHHHHhhccC-c------hHHHHHHHH
Q 011587 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV--DVSGVKPTDTTMVCVLSVSSQLG-L------LEFGACVHG 241 (482)
Q Consensus 171 ~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~p~~~~~~~l~~~~~~~~-~------~~~a~~~~~ 241 (482)
+|...+|..|..+|...|+.. .++.+.+.+..+.. ...|+---..-+-..+.++-..- + ..--+.++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli--~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLI--LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchH--HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 788999999999999943321 13333332222210 01222211111111112221110 0 001112223
Q ss_pred HHHHhCCCCCCchhH--HHHHHHHHHc-CCChHHHHHHHHhccC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 011587 242 YMEKTFYMPENDVFI--GTALVDMYSK-CGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~--~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 317 (482)
+.++.+..-|..... +...++-... ...+++-........+ ++..+|.+++.+-...|+.+.|..++.+|++.|.+
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 333333100111100 0001222222 2234444444445544 89999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
.+..-|..|+-+ .++...++.++.-|... |+.|+..|+...+..+.+.|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 998888888876 78889999999999994 999999999998888887555
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-08 Score=92.80 Aligned_cols=219 Identities=9% Similarity=0.000 Sum_probs=176.0
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|+...|..-|+... .....+ ...|.-+...|....+.++..+.|..+.+.+ +.++.+|..-..++.-.+++++
T Consensus 339 ~g~~~~a~~d~~~~I--~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAI--KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred cCCchhhhhhHHHHH--hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHH
Confidence 678888888888877 333222 2237778888999999999999999999998 7788999999999999999999
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 273 ALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 273 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
|..=|++... .++..|-.+..+..+.+++++++..|++.++. ++-.+..|+.....+...+++++|.+.|+....-
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999875 35677777778888999999999999999887 4546788999999999999999999999998862
Q ss_pred ----cCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 350 ----WGVEPHI--KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 350 ----~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+++-.+. ..-..++..-. .+++..|.+++++. .+.| ....|..|...-.+.|+.++|.++|++...+-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0111122 22223333223 38999999999988 6666 677899999999999999999999999887655
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-08 Score=92.35 Aligned_cols=262 Identities=10% Similarity=-0.039 Sum_probs=178.8
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
++.....-..-+.. ..++.+..++.+... ...++....+..-|.++...|+..+-..+-.++++.. |..
T Consensus 243 ~~dll~~~ad~~y~-----~c~f~~c~kit~~ll---e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~ 311 (611)
T KOG1173|consen 243 NLDLLAEKADRLYY-----GCRFKECLKITEELL---EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---PSK 311 (611)
T ss_pred cHHHHHHHHHHHHH-----cChHHHHHHHhHHHH---hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---CCC
Confidence 33333444444555 677788888887764 2334444455555557777777777666666777666 667
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
..+|-++.--|...|++.+|.+.|.+...- -...|-....+|+-.|..++|+..+...-+.= +-..-.+-.+.--|
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEY 390 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHH
Confidence 777888888888888888888888776542 34677788888888888888888777665431 11112222344456
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--------CCC-CCHHHHHHHHHHHHhc
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--------PIK-PDAILWRSLLSACNVH 401 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~-p~~~~~~~l~~~~~~~ 401 (482)
.+.++.+.|.+.|.+... -.+-|+...+-+.-.....+.+.+|..+|+.. .-+ ....+++.|..+|.+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 677888888888887776 34556666776666666677788887777654 111 1455677788888888
Q ss_pred CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.+++|...+++.+...+ .+..++.++.-.|...|+.+.|...|.+..
T Consensus 469 ~~~~eAI~~~q~aL~l~~--------k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSP--------KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hhHHHHHHHHHHHHHcCC--------CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 888888888888888887 778888888888888888888887776644
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-09 Score=105.20 Aligned_cols=226 Identities=13% Similarity=-0.015 Sum_probs=170.0
Q ss_pred CHHHHHHHHHHhhc-----cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH---------cCCChHHHHHHHHhcc
Q 011587 216 TDTTMVCVLSVSSQ-----LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS---------KCGCLDNALLIFSRMR 281 (482)
Q Consensus 216 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~ 281 (482)
+...|...+.+-.. .+..++|...+++..+.. |.+...|..+..+|. ..+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44555555555321 235678999999999887 566777777766554 2345899999999987
Q ss_pred C--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HH
Q 011587 282 E--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IK 357 (482)
Q Consensus 282 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 357 (482)
+ | +..++..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...+++..+. .|+ ..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~ 407 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAA 407 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChh
Confidence 5 3 677888888899999999999999999998753 25667888888999999999999999999884 333 23
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHcC--CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 358 HYSCIVDLLGRAGHLEEAYNFIMGI--PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
.+..++..+...|++++|...+++. ...| +...+..+..++...|+.++|...++++....+ .+.....
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~--------~~~~~~~ 479 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI--------TGLIAVN 479 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc--------hhHHHHH
Confidence 3334444566789999999999887 2235 445567777888899999999999999877666 4555666
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHh
Q 011587 435 ALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
.+...|...| ++|...++.+.+
T Consensus 480 ~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 480 LLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccH--HHHHHHHHHHHH
Confidence 7777778887 488887777664
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-11 Score=77.30 Aligned_cols=50 Identities=30% Similarity=0.509 Sum_probs=40.1
Q ss_pred CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhc
Q 011587 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229 (482)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~ 229 (482)
||+.+||++|.+|++ .|++++|+++|++|. +.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~-----~~~~~~a~~l~~~M~--~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCK-----AGKFEEALKLFKEMK--KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHH-----CcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHcC
Confidence 577788888888888 888888888888887 77888888888888887764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-07 Score=90.43 Aligned_cols=401 Identities=14% Similarity=0.028 Sum_probs=260.0
Q ss_pred HHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCC---ChhhHHHH---hcC-CCCccHHHHHHHHHHCCCC
Q 011587 30 QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP---NLFLFNTL---IRC-TPPQDSVLVFAYWVSKGLL 102 (482)
Q Consensus 30 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l---l~~-~~~~~a~~~~~~m~~~~~~ 102 (482)
++.-..+..++.++..+.-+..++ |.++.+.+.|+....- ....|+.+ ..+ |....|+.+++.-....-.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~---g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRC---GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 333445778899999999999999 9999999999986521 11223222 222 8888899998887765544
Q ss_pred CCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhC-----------CChhHHHHHh
Q 011587 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR--GF--MFNVLVATTLIHFYASN-----------KDISSGKKVF 167 (482)
Q Consensus 103 p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~ 167 (482)
|++...+-..-+.|.+.-+. .+++..+-.+++.. +. ...+..|..+.-+|... ....++++.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~--~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKL--VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhh--hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 64555555555666654424 77777777766662 11 12234455454444332 1234566666
Q ss_pred ccCCCC-----CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHH
Q 011587 168 DQMPMR-----SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242 (482)
Q Consensus 168 ~~~~~~-----~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (482)
++..+. ++..|-++ -|+. .++.+.|.+..++.. ..+-.-+...|..+.-.+...+++.+|+.+.+.
T Consensus 468 e~av~~d~~dp~~if~lal--q~A~-----~R~l~sAl~~~~eaL--~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLAL--QYAE-----QRQLTSALDYAREAL--ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHhcCCCCchHHHHHHH--HHHH-----HHhHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 666432 22223222 3445 778888998888887 666667888888888888888999999988887
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C--------------------------C-HHHHHH
Q 011587 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K--------------------------N-VLTWTA 290 (482)
Q Consensus 243 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~--------------------------~-~~~~~~ 290 (482)
....- +.+......-++.-..-++.+++......+.. + + ..++..
T Consensus 539 al~E~---~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 539 ALEEF---GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHh---hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 76543 22332222333333345566655554433321 0 0 111211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVK--PN------AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
+.......+. .+..-. .|...-+. |+ ...+......+.+.++.++|...+.+..+ ..+-....|...
T Consensus 616 ls~l~a~~~~--~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 616 LSSLVASQLK--SAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLR 690 (799)
T ss_pred HHHHHHhhhh--hccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHh
Confidence 1111110000 000000 01111112 22 12234555677788999999999998887 456667778877
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHH--HHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEK--VGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
...+...|.+++|.+.|... .+.| ++.+..++...+.+.|+...|.. ++..+.+.+| .+...|..+..
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--------~n~eaW~~LG~ 762 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--------LNHEAWYYLGE 762 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--------CCHHHHHHHHH
Confidence 78888999999999988877 6677 56788899999999999888888 9999999999 89999999999
Q ss_pred HHHhCCCchHHHHHHHHhHhcC
Q 011587 439 IYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+.+.|+.++|.+.|.......
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999998876544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-07 Score=81.33 Aligned_cols=260 Identities=13% Similarity=0.032 Sum_probs=123.6
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCC
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT-TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 252 (482)
|+.....+...+.. .|+.++|+..|+..+ -+.|+.. ....-.-.+.+.|+.+....+...+.... ..
T Consensus 231 NvhLl~~lak~~~~-----~Gdn~~a~~~Fe~~~----~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ 298 (564)
T KOG1174|consen 231 NEHLMMALGKCLYY-----NGDYFQAEDIFSSTL----CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KY 298 (564)
T ss_pred cHHHHHHHhhhhhh-----hcCchHHHHHHHHHh----hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hc
Confidence 44555555555555 555555555555543 2223211 11111222344455555554444444333 22
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
+...|..-........++..|+.+-++..+ .++..|-.-...+...+++++|.-.|+..+... +-+...|.-|+.+
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 333333333344444555555555555543 233333333344555556666665565555432 1244556666666
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH-HHHhc-cCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHh
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV-DLLGR-AGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVA 405 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 405 (482)
|...|.+.+|.-+-+...+ -++.+..+.+.+. ..+.. ..--++|.++++.. .+.|+ ....+.+...+...|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 6666666555555555544 2333444444332 22221 12234555555544 44453 234444445555555666
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.+..++++.+...+ |....+.|...+...+.+++|+..|....
T Consensus 456 D~i~LLe~~L~~~~---------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFP---------DVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hHHHHHHHHHhhcc---------ccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666665555443 45555555555555555555555554433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-10 Score=107.35 Aligned_cols=243 Identities=18% Similarity=0.119 Sum_probs=158.2
Q ss_pred HHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhc
Q 011587 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 201 ~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 280 (482)
.++-.+. ..|+.|+..||..++.-||..|+.+.|- +|..|.-... +.+..+|+.++.+....++.+.+.
T Consensus 11 nfla~~e--~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL--pv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHE--ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL--PVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHH--HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc--cccchhHHHHHhcccccccccCCC------
Confidence 4566676 7899999999999999999999999999 9999988887 779999999999999999988776
Q ss_pred cCCCHHHHHHHHHHHHhcCChHH---HHHHHHHH----HhCCCCCCHHHHHHHHHHH--------------hccCcHHHH
Q 011587 281 REKNVLTWTAMATGMAIHGKGNE---AIRLLDSM----RDCGVKPNAVTFTSLFAAC--------------CHAGLVEEG 339 (482)
Q Consensus 281 ~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m----~~~g~~p~~~~~~~ll~~~--------------~~~~~~~~a 339 (482)
+|...+|..|..+|...|+... +.+.+... ...|+..-..-+-..+.++ ...|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999654 33322222 2233321111111111111 112333333
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-CHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
.+++..+.......|... +++-..... .+++-........-.|+..+|..++.+-.-.|+.+.|..++.+|.+.|
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 333322222100111111 233332222 233333333333225888888888888888888888888888888888
Q ss_pred CCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccE
Q 011587 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 469 (482)
.. .+.+-|..|+-+ .++...+..+++.|...|+.|+..+.-
T Consensus 235 fp-------ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 235 FP-------IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred CC-------cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 72 344445555544 777788888888888888888876653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=93.53 Aligned_cols=230 Identities=15% Similarity=0.097 Sum_probs=197.3
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhH
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 256 (482)
.-+.+.++|.+ .|.+.+|.+.++.-. .-.|-+.||..|-.+|.+..++..|..++.+-++.- |.++..
T Consensus 225 Wk~Q~gkCylr-----Lgm~r~AekqlqssL----~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---P~~VT~ 292 (478)
T KOG1129|consen 225 WKQQMGKCYLR-----LGMPRRAEKQLQSSL----TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---PFDVTY 292 (478)
T ss_pred HHHHHHHHHHH-----hcChhhhHHHHHHHh----hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---Cchhhh
Confidence 34678899999 999999999999876 346778899999999999999999999999988775 667777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 011587 257 GTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333 (482)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 333 (482)
.......+-..++.++|.++|+...+ .++.+..++...|.-.++++-|+.+++++.+.|+. +...|+.+.-+|.-.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 77888899999999999999999875 36667777778889999999999999999999987 888899899999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPH--IKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
+++|-+..-|.+.... --.|+ ...|-.+.......|++..|.+.|+-. .-.-+...+|.|.-.-.+.|+++.|..
T Consensus 372 qQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 9999999999998873 33344 457888888888999999999999877 323367789999888899999999999
Q ss_pred HHHHHHhcCCC
Q 011587 410 VGKILLQLQPE 420 (482)
Q Consensus 410 ~~~~~~~~~~~ 420 (482)
+++.+....|+
T Consensus 451 ll~~A~s~~P~ 461 (478)
T KOG1129|consen 451 LLNAAKSVMPD 461 (478)
T ss_pred HHHHhhhhCcc
Confidence 99999998884
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-08 Score=91.30 Aligned_cols=268 Identities=10% Similarity=-0.029 Sum_probs=209.5
Q ss_pred CCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC---CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC
Q 011587 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR---SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216 (482)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 216 (482)
..-+......-.+-+...+++.+..++++.+.+. ....+-.-|.++.. .|+..+-..+=.++. ...+-.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~e-----l~~~n~Lf~lsh~LV---~~yP~~ 311 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYE-----LGKSNKLFLLSHKLV---DLYPSK 311 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHH-----hcccchHHHHHHHHH---HhCCCC
Confidence 3445666667777788899999999999988753 55566677778888 777777777777774 233446
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMAT 293 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 293 (482)
+.+|-++..-|...|+..+|.+.|.+....+ +.-...|-...+.|+-.|..+.|+..|....+ + .-..+--+.-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD---~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLD---PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcC---ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 7799999999999999999999999988776 55667899999999999999999998877654 1 1122233444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---C--CCcCHHHHHHHHHHHhc
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW---G--VEPHIKHYSCIVDLLGR 368 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~~li~~~~~ 368 (482)
-|.+.++...|.++|....... +-|+...+-+.-...+.+.+.+|..+|+.....- + ..-...+++.|.++|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 5788999999999999887652 3366677777766677899999999999887310 0 11134578999999999
Q ss_pred cCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 369 AGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 369 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+..++|+..+++. .. +.+..++.++.-.|...|+++.|.+.|.+.+...|
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999987 33 34888999999999999999999999999999988
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-07 Score=82.82 Aligned_cols=401 Identities=13% Similarity=0.039 Sum_probs=235.8
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCC---CChhhHHHHhcC---CCCccHHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP---PNLFLFNTLIRC---TPPQDSVLV 92 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~---~~~~~a~~~ 92 (482)
+++++|.+....+...+ +.+......=+-..... +.|++|+.+.+.-.. -+...|.-.--. +..++|+..
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~---~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQL---DKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhh---hHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 66788888888887776 44455555555556666 899999988776542 111112211111 889999988
Q ss_pred HHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 93 FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
+. |..+.+..+...-...+.+.+ + +++|..+|+.+.+++.+- +...-..++..- ---.+ ++.+..+
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~-~--ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~-~~~q~v~ 168 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLE-R--YDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV-QLLQSVP 168 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHh-h--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH-HHHHhcc
Confidence 88 444435557777777888888 8 999999999998876432 122222222211 11111 1344444
Q ss_pred CCCchhHHHHHH---HHhcCCcccccchHHHHHHHHHhhh----c--c-----CCCCcCHHH-HHHHHHHhhccCchHHH
Q 011587 172 MRSSATWNAMIN---GYCSQSKKAKDCAFNALVLFRDMLV----D--V-----SGVKPTDTT-MVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 172 ~~~~~~~~~li~---~~~~~~~~~~~~~~~a~~~~~~m~~----~--~-----~~~~p~~~~-~~~l~~~~~~~~~~~~a 236 (482)
.....+|..+.+ .+.. .|++.+|+++++.... + . .++.-...+ -.-+.-.+...|+.++|
T Consensus 169 ~v~e~syel~yN~Ac~~i~-----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIE-----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred CCCcchHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 433445554443 3445 8999999999988720 0 0 011111111 22344566788999999
Q ss_pred HHHHHHHHHhCCCCCCchhH----HHHHHHHHHcCCChH-HHHHHHHhcc------------------------------
Q 011587 237 ACVHGYMEKTFYMPENDVFI----GTALVDMYSKCGCLD-NALLIFSRMR------------------------------ 281 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~~~------------------------------ 281 (482)
.+++...++... .|... -|.|+.+-....-.+ .++..++...
T Consensus 244 ~~iy~~~i~~~~---~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 244 SSIYVDIIKRNP---ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHhcC---CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998874 33322 222222211111111 1111111111
Q ss_pred --------------CC-CHHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 282 --------------EK-NVLTWTAMATGM--AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 282 --------------~~-~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
.. ....+.+++... ++...+.++.+++...-+....-........+......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 011223333222 2222466666766666554322224455566677788999999999999
Q ss_pred --------HhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--------CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 345 --------NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--------PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 345 --------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
.+.+ .+..|. +...++..+.+.++.+.|..++.+. .-.+ -..++..+...-.+.|+.++|
T Consensus 401 ~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 5555 355555 4455667777777666555555443 1122 223444444555678999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
..+++++.+..+ ++..+...++.+|++. +.+.|..+-+.+
T Consensus 478 ~s~leel~k~n~--------~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFNP--------NDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhCC--------chHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999 8999999999999988 567777765443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-09 Score=91.43 Aligned_cols=231 Identities=13% Similarity=0.047 Sum_probs=193.8
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHH-HHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTW-TAM 291 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l 291 (482)
.|.+=-+.+..+|.+.|.+..|++-++..++... -+.+|..|-.+|.+..+...|+.+|.+..+ |..+|| .-+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~----~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ 296 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP----HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ 296 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC----chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh
Confidence 3444446788999999999999999998887743 567788899999999999999999998875 544444 556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
...+-..++.++|.++++...+.. ..+.....++...|.-.++++.|..+++++.+ .|+. +...|+.+.-+|.-.++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcc
Confidence 677888899999999999998764 34667777778888889999999999999999 5875 78899999999999999
Q ss_pred HHHHHHHHHcC---CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 372 LEEAYNFIMGI---PIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 372 ~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
+|-++.-|++. .-.| -...|-.+.......||+..|.+.|+-++..++ .+.+.++.|.-.-.+.|++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--------~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--------QHGEALNNLAVLAARSGDI 445 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc--------chHHHHHhHHHHHhhcCch
Confidence 99998888776 1123 345677788888899999999999999999999 7999999999999999999
Q ss_pred hHHHHHHHHhHhcC
Q 011587 447 PDVESVRKQMKVKR 460 (482)
Q Consensus 447 ~~a~~~~~~m~~~~ 460 (482)
++|..++....+..
T Consensus 446 ~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 446 LGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHHhhhhC
Confidence 99999999877543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-08 Score=86.64 Aligned_cols=224 Identities=11% Similarity=-0.042 Sum_probs=161.4
Q ss_pred ccchHHHHHHHHHhhhccCCCCcC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPT--DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.+..+.++..+.++.. .....|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++
T Consensus 39 ~~~~e~~i~~~~~~l~-~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 39 TLQQEVILARLNQILA-SRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred chHHHHHHHHHHHHHc-cccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCH
Confidence 4556677777777761 1223332 3567788888999999999999999999987 67889999999999999999
Q ss_pred HHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 011587 271 DNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347 (482)
Q Consensus 271 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 347 (482)
++|...|++..+ | +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+.+..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999975 4 56788888999999999999999999998864 433222222223445678999999997766
Q ss_pred HhcCCCcCHHHHHHHHHHHhccCCHH--HHHHHHHcC-CC----CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 348 SKWGVEPHIKHYSCIVDLLGRAGHLE--EAYNFIMGI-PI----KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
. ...++...+ .+... ..|+.. ++.+.+.+. .. .| ....|..+...+.+.|++++|...|+++++.+|
T Consensus 193 ~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5 334433222 23333 344443 333333322 11 12 345788899999999999999999999999998
Q ss_pred CcccccccCCchhHHH
Q 011587 420 EVTFVDVACTSEDFVA 435 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~ 435 (482)
++..-+..
T Consensus 268 --------~~~~e~~~ 275 (296)
T PRK11189 268 --------YNFVEHRY 275 (296)
T ss_pred --------chHHHHHH
Confidence 66555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-06 Score=82.82 Aligned_cols=423 Identities=9% Similarity=-0.062 Sum_probs=261.9
Q ss_pred hhhHHHHHHHhc-cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCC---hhhHHHHhc
Q 011587 7 HRCFALLKLKAI-TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN---LFLFNTLIR 82 (482)
Q Consensus 7 ~~~~~~~l~~~~-~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~ 82 (482)
...|..+++..- +......+..+.+.+ +++....+....--.+..- |+.++|........+.| .++|..+--
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~l---g~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCL---GKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcc---cchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 344445555443 233333344444444 4444444444443344445 88899998888877544 345655422
Q ss_pred C----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 011587 83 C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK 158 (482)
Q Consensus 83 ~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 158 (482)
. .++++|+..|......+ |.|...+.-+--.=++.| + ++.......++.+.. +-....|..+..++.-.|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmR-d--~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMR-D--YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHH-h--hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 2 88999999999998854 546666665554555566 6 777777777777652 334566788888888889
Q ss_pred ChhHHHHHhccCCC-----CCchhHHHHH------HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 159 DISSGKKVFDQMPM-----RSSATWNAMI------NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 159 ~~~~A~~~~~~~~~-----~~~~~~~~li------~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
+...|..+.++..+ ++...|.-.. ....+ .|.++.|++-+..-. ..+.-....-..-...+
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E-----~g~~q~ale~L~~~e---~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE-----AGSLQKALEHLLDNE---KQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHhhh---hHHHHHHHHhhhHHHHH
Confidence 99999888876542 3443333222 23344 777788887777653 22222233334556777
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH-HHHHhccCC--CHHHHHHHHHHHHh-cCChHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL-LIFSRMREK--NVLTWTAMATGMAI-HGKGNE 303 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~--~~~~~~~li~~~~~-~~~~~~ 303 (482)
.+.+++++|..++..++... |.+...|..+..++.+-.+.-++. .+|....+. ....-..+-..... ..-.+.
T Consensus 230 ~kl~~lEeA~~~y~~Ll~rn---Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLERN---PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHhhHHhHHHHHHHHHhhC---chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence 88999999999999998887 666666666777776333333443 666665531 10000000001111 122344
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCC------------CcCHHHH--HHHHHHHhc
Q 011587 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK-WGV------------EPHIKHY--SCIVDLLGR 368 (482)
Q Consensus 304 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------------~~~~~~~--~~li~~~~~ 368 (482)
.-.++..+.+.|+++- +..+..-|-.....+-.+++.-.+... .|- +|+...| -.++..|-+
T Consensus 307 vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 5566777788887653 333333332222111111111111110 011 4555544 456778889
Q ss_pred cCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 369 AGHLEEAYNFIMGI-PIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 369 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
.|+++.|+.+++.. +-.|+. ..|..-.+.+...|++++|..+++++.+.+. +|...-.--++-..++++.
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~--------aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT--------ADRAINSKCAKYMLRANEI 455 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHcccc
Confidence 99999999999987 556654 3555556778889999999999999999998 8887777888888999999
Q ss_pred hHHHHHHHHhHhcCC
Q 011587 447 PDVESVRKQMKVKRV 461 (482)
Q Consensus 447 ~~a~~~~~~m~~~~~ 461 (482)
++|.++...+.+.|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999999887775
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-07 Score=81.52 Aligned_cols=299 Identities=10% Similarity=-0.025 Sum_probs=222.6
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHH---H
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN---A 180 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 180 (482)
+..+...-+.+++... .++...+.+.+-.+... -++-|......+..++...|+.++|+..|+....-|+.+.. .
T Consensus 193 ~~dwls~wika~Aq~~-~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMF-NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CccHHHHHHHHHHHHH-hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 5666666777777766 54455555555555443 34667888999999999999999999999987644333222 1
Q ss_pred HHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 011587 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260 (482)
Q Consensus 181 li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 260 (482)
..-.+.+ .|+.++...+...+. .-.+-+...|..-.......+++..|..+-++.++.. +.+...+-.-
T Consensus 272 Ya~LL~~-----eg~~e~~~~L~~~Lf---~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilK 340 (564)
T KOG1174|consen 272 YAVLLGQ-----EGGCEQDSALMDYLF---AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILK 340 (564)
T ss_pred HHHHHHh-----ccCHhhHHHHHHHHH---hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhc
Confidence 2223345 777888887777764 1222344555555556667788889998888888877 6677777777
Q ss_pred HHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HH-HhccCc
Q 011587 261 VDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF-AA-CCHAGL 335 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~-~~~~~~ 335 (482)
...+...|+.++|.=.|+.... | +...|.-|+.+|...|++.+|..+-+..... .+.+..+...+. .. +-...-
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchh
Confidence 7888999999999999987763 3 7889999999999999999999887766554 334566665442 22 223344
Q ss_pred HHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKI 413 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 413 (482)
-++|.++++.-.+. .|+ ....+.+.+.+...|+.+.+..++++. ...||...-+.|...+.....+.+|...|..
T Consensus 420 rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57888888887763 444 456677788889999999999999988 6789999999999999999999999999999
Q ss_pred HHhcCC
Q 011587 414 LLQLQP 419 (482)
Q Consensus 414 ~~~~~~ 419 (482)
+++.+|
T Consensus 497 ALr~dP 502 (564)
T KOG1174|consen 497 ALRQDP 502 (564)
T ss_pred HHhcCc
Confidence 999999
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-06 Score=80.40 Aligned_cols=386 Identities=13% Similarity=0.126 Sum_probs=217.7
Q ss_pred CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCC----------hhhHHHHhcC-------CCCccHHHHHHHHHHCC
Q 011587 38 SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN----------LFLFNTLIRC-------TPPQDSVLVFAYWVSKG 100 (482)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~ll~~-------~~~~~a~~~~~~m~~~~ 100 (482)
.++...+-.+.+++.. +++++|.+.+......+ -..|+.+-.. +.--..-++++.+...-
T Consensus 167 ~~P~~~eeyie~L~~~---d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKS---DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred cCHHHHHHHHHHHHhc---cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 4444566677788888 89999888888876322 2233333222 22233344444444322
Q ss_pred CCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC----------------C------
Q 011587 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN----------------K------ 158 (482)
Q Consensus 101 ~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------ 158 (482)
... =...|++|..-|.+.| . ++.|..++++.+.. ..+..-+..+.+.|+.- |
T Consensus 244 tDq-~g~Lw~SLAdYYIr~g-~--~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 244 TDQ-LGFLWCSLADYYIRSG-L--FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred cHH-HHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 111 2346888999999988 8 99999999988875 22333344444444331 1
Q ss_pred ChhHHHHHhccCCC---------------CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC------H
Q 011587 159 DISSGKKVFDQMPM---------------RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT------D 217 (482)
Q Consensus 159 ~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~------~ 217 (482)
+++-...-|+.+.. .++..|..-+..+ .|+..+-..+|.+... .+.|- .
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-------e~~~~~~i~tyteAv~---~vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-------EGNAAEQINTYTEAVK---TVDPKKAVGSPG 387 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh-------cCChHHHHHHHHHHHH---ccCcccCCCChh
Confidence 12222233333221 1333443333332 6677778888887752 33332 2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHhccC------------
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND---VFIGTALVDMYSKCGCLDNALLIFSRMRE------------ 282 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------ 282 (482)
..|..+.+.|-..|+++.|..+|++..+... +.- ..+|......-.+..+++.|+++.+....
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y--~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPY--KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 3577888889999999999999999988765 222 45677777777788899999999887652
Q ss_pred ---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHH-HH----------------------------
Q 011587 283 ---------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PNAV-TF---------------------------- 323 (482)
Q Consensus 283 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~-~~---------------------------- 323 (482)
.+...|...+..--..|-++....+++++.+..+. |... .|
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 13345666666666777888888888888776543 2111 11
Q ss_pred -----HHHHHHHh---ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh----ccCCHHHHHHHHHcC--CCCCC--
Q 011587 324 -----TSLFAACC---HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG----RAGHLEEAYNFIMGI--PIKPD-- 387 (482)
Q Consensus 324 -----~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~--~~~p~-- 387 (482)
+..+.-+. ....++.|..+|++..+ |++|...-+ +.-.|+ +.|-...|..++++. ++++.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKt--iyLlYA~lEEe~GLar~amsiyerat~~v~~a~~ 621 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKT--IYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR 621 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH
Confidence 11111111 11245555555555555 444432211 111121 234455555555555 22321
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH---HHHHHHHhCCCchHHHHHHHHhH
Q 011587 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV---ALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
...||..|+-....=.+..-..+|+++++.-| +...-. -....-++.|..+.|..++.--.
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~Lp---------~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIESLP---------DSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC---------hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 23455555444443344445556666665533 333322 34455567788888888876544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-08 Score=92.18 Aligned_cols=252 Identities=11% Similarity=0.002 Sum_probs=188.5
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC----
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG---- 268 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g---- 268 (482)
.|++++|++.++.- ...+......+......+.+.|+.++|..++..+++.+ |.+..-|..+..+..-..
T Consensus 17 ~g~~~~AL~~L~~~---~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 17 AGDYEEALEHLEKN---EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred CCCHHHHHHHHHhh---hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhccccc
Confidence 89999999999875 33444455566778899999999999999999999998 777777787777773332
Q ss_pred -ChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 269 -CLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKG-NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 269 -~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
+.+...++|+++.+ |...+...+.-.+.....+ ..+..++..+...|+++ +|+.|-..|.......-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 56777888888764 3222222232222222223 34566777788888763 55566666666666666666666
Q ss_pred HhHHhc-------------CCCcCHH--HHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHH
Q 011587 345 NMKSKW-------------GVEPHIK--HYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 345 ~~~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 407 (482)
...... .-+|+.. ++.-+...|-..|+.++|++++++. ...|+ +..|..-.+.+-+.|++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 655421 1134443 4456678888999999999999977 55675 66788888889999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.+.++.+..++. .|...-+-.+..+.+.|++++|.+++..+.+.+.
T Consensus 248 a~~~~~Ar~LD~--------~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 248 AEAMDEARELDL--------ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhCCh--------hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999 8999999999999999999999999999988776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-07 Score=85.71 Aligned_cols=283 Identities=10% Similarity=0.007 Sum_probs=174.1
Q ss_pred HHhcCCCCCChHHHHHHhhcCC--CCChhhHHHHhcC-----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhh----
Q 011587 49 YCTKKASPQSTKIVHFVFTHFD--PPNLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA---- 117 (482)
Q Consensus 49 ~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~---- 117 (482)
.+... |++++|++.++... -.|..++...... |+.++|..+|..+...+ | +...|...+..+.
T Consensus 13 il~e~---g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--P-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 13 ILEEA---GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--P-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHC---CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHhhhc
Confidence 34556 77888887776654 3444444332222 78888888888887765 5 4444444443333
Q ss_pred hccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH-HHHHhccCCCCC-chhHHHHHHHHhcCCcccccc
Q 011587 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS-GKKVFDQMPMRS-SATWNAMINGYCSQSKKAKDC 195 (482)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~~~ 195 (482)
... +...+...++++++.+.- |...+...+.-.+.....+.. +...+..+.... +.+++.+-..|.. ...
T Consensus 87 ~~~-~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d-----~~K 158 (517)
T PF12569_consen 87 QLS-DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD-----PEK 158 (517)
T ss_pred ccc-cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC-----hhH
Confidence 111 112566667777665542 222222222211222122222 222333333333 3455555555554 333
Q ss_pred hHHHHHHHHHhhhc--cC----------CCCcCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHH
Q 011587 196 AFNALVLFRDMLVD--VS----------GVKPTD--TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261 (482)
Q Consensus 196 ~~~a~~~~~~m~~~--~~----------~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 261 (482)
..-..+++...... .. .-.|+. +++..+...|...|++++|.+++++.+++. |..+..|..-.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---Pt~~ely~~Ka 235 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT---PTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCcHHHHHHHH
Confidence 44444444443310 11 123444 355667788889999999999999999987 66788899999
Q ss_pred HHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHH
Q 011587 262 DMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF--------TSLFAAC 330 (482)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--------~~ll~~~ 330 (482)
..|-+.|++.+|.+.++...+ .|-..-+..+..+.+.|++++|.+++......+..|....+ .....+|
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988875 45567777888899999999999999998777654432221 3445678
Q ss_pred hccCcHHHHHHHHHHhHH
Q 011587 331 CHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~ 348 (482)
.+.|++..|.+-|..+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888998888877776665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-08 Score=93.91 Aligned_cols=235 Identities=17% Similarity=0.111 Sum_probs=175.7
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhc---cCC-CCcCHHH-HHHHHHHhhccCchHHHHHHHHHHHHh-----
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD---VSG-VKPTDTT-MVCVLSVSSQLGLLEFGACVHGYMEKT----- 246 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~---~~~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 246 (482)
+...+...|.. .|+++.|+.+++..... ..| ..|...+ .+.+...|...+++++|..+|+.++..
T Consensus 201 ~~~~La~~y~~-----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 201 TLRNLAEMYAV-----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 44447788888 89999999888876511 112 2344443 345778889999999999999998752
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----------CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC-
Q 011587 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----------KNV-LTWTAMATGMAIHGKGNEAIRLLDSMRDC- 314 (482)
Q Consensus 247 ~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 314 (482)
|-.-+.-..+++.|..+|.+.|++++|..++++..+ +.+ ..++.+...++..+++++|..++++..+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 321123345677788899999999999998887653 222 34666777889999999999999876431
Q ss_pred --CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----C--CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 315 --GVKPN----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKW----G--VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 315 --g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
-+.++ ..+++.+...|.+.|++++|+++++++.+.. | ..-....++.+...|.+.++..+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 12222 4578999999999999999999999988752 1 1122457788899999999999998888766
Q ss_pred --------CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 383 --------PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 383 --------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.-.|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22343 46899999999999999999999998874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-08 Score=89.23 Aligned_cols=223 Identities=12% Similarity=0.006 Sum_probs=156.5
Q ss_pred CchHHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHH
Q 011587 231 GLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
+..+.+..-+.+++... ..|+.....|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566677777777543 22233456788889999999999999999998874 367899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CC
Q 011587 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PI 384 (482)
Q Consensus 307 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 384 (482)
.|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.|++. ..
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999886432 4667778888889999999999999999884 343322222222344567899999999765 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCc
Q 011587 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 385 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 462 (482)
.|+...+ . ......|+...+ ..++.+.+........ -......|..+...+.+.|++++|...|++....+..
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l-~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTEL-AERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3333222 2 233345666554 3555554321100000 0034578999999999999999999999998876653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=82.85 Aligned_cols=193 Identities=15% Similarity=0.055 Sum_probs=145.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
...-|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+.|++....... +....|..-.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4556777888888888888888888753 3457777888888888888888888888776433 56667777777788
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKV 410 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 410 (482)
.|.+++|...|++......+.--..+|..+.-+..+.|+++.|.+.|++. ...| ...+.-.+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888888875444444567888887888888888888888876 3334 445666677777788888888888
Q ss_pred HHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
++.....+. ++.......|+.-.+.|+.+.+.+.=.++.
T Consensus 196 ~~~~~~~~~--------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGG--------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhccc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888887777 788888888888888888777776655544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-06 Score=85.44 Aligned_cols=378 Identities=12% Similarity=0.078 Sum_probs=226.0
Q ss_pred CChhhHHHHHHHhccCcchHHHHHHHHHHhcCC--CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-CCChhhHHHHh
Q 011587 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-PPNLFLFNTLI 81 (482)
Q Consensus 5 p~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~ll 81 (482)
-|...|+.+|..- -..-+++.++....+++ .|+.-.+..+.++... +-+.+..++++++. +|++++-|.-+
T Consensus 950 ~D~~LW~~VL~e~---n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta---dLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEE---NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred cChHHHHHHHhcc---ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc---CCcHHHHHHHHHHhcCCcccccchhh
Confidence 3444555554322 13335666777777665 4566667788888888 88999999999876 55555433322
Q ss_pred cC--------CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 011587 82 RC--------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF 153 (482)
Q Consensus 82 ~~--------~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (482)
.. -+..+..++.+++...+. | + +...+...+ - +++|..+|++. ..+..+.+.|+.-
T Consensus 1024 QnLLiLtAikad~trVm~YI~rLdnyDa-~-~------ia~iai~~~-L--yEEAF~ifkkf-----~~n~~A~~VLie~ 1087 (1666)
T KOG0985|consen 1024 QNLLILTAIKADRTRVMEYINRLDNYDA-P-D------IAEIAIENQ-L--YEEAFAIFKKF-----DMNVSAIQVLIEN 1087 (1666)
T ss_pred hhhHHHHHhhcChHHHHHHHHHhccCCc-h-h------HHHHHhhhh-H--HHHHHHHHHHh-----cccHHHHHHHHHH
Confidence 22 666777777777766532 1 1 233344445 5 77888887754 3455566666653
Q ss_pred HHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch
Q 011587 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233 (482)
Q Consensus 154 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~ 233 (482)
-+.++.|.++-++..+ +..|..+..+-.+ .+...+|++-|-+.. |+..|..+++.+.+.|.+
T Consensus 1088 ---i~~ldRA~efAe~~n~--p~vWsqlakAQL~-----~~~v~dAieSyikad--------Dps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1088 ---IGSLDRAYEFAERCNE--PAVWSQLAKAQLQ-----GGLVKDAIESYIKAD--------DPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred ---hhhHHHHHHHHHhhCC--hHHHHHHHHHHHh-----cCchHHHHHHHHhcC--------CcHHHHHHHHHHHhcCcH
Confidence 4677888887777664 4568888888888 888888888887653 677888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH--------------------------H
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL--------------------------T 287 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~ 287 (482)
++..+++..+++... ++... ..|+-+|++.+++.+.++++. -||.. -
T Consensus 1150 edLv~yL~MaRkk~~--E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKKVR--EPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred HHHHHHHHHHHHhhc--Cccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 998888888877766 33433 678888999888887776643 23333 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (482)
|..|...+...|+++.|.+.-++. -+..||..+-.+|...+.+.-| +|.- .++-....-...++..|.
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHH
Confidence 444444444555555544433332 1344555555555544443322 1222 122334445556666666
Q ss_pred ccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 368 RAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
..|.+++...+++.. |+.. .-..|+-|.-.|++- ++++..+-++-... ....--+++++.++.-
T Consensus 1291 ~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFws-------------RvNipKviRA~eqahl 1356 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS-------------RVNIPKVIRAAEQAHL 1356 (1666)
T ss_pred hcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-------------hcchHHHHHHHHHHHH
Confidence 666666666666654 4433 333455555445443 33333333332221 1111246666666666
Q ss_pred chHHHHHHHH
Q 011587 446 WPDVESVRKQ 455 (482)
Q Consensus 446 ~~~a~~~~~~ 455 (482)
|.+..-++.+
T Consensus 1357 W~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1357 WSELVFLYDK 1366 (1666)
T ss_pred HHHHHHHHHh
Confidence 6666555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-05 Score=73.97 Aligned_cols=339 Identities=13% Similarity=0.119 Sum_probs=205.2
Q ss_pred hHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHC-CCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHH
Q 011587 59 TKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSK-GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137 (482)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 137 (482)
++.+.....+|++--..-...++..|+.......|...+.. .++. ....|...+......+ - ++.+..++++.++
T Consensus 91 ~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq-H~rIW~lyl~Fv~~~~-l--Pets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ-HDRIWDLYLKFVESHG-L--PETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh-hccchHHHHHHHHhCC-C--hHHHHHHHHHHHh
Confidence 44445555555432222233344448888888888887653 3333 5667888887777777 6 7788888888875
Q ss_pred hCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC----------CchhHHHHHHHHhcCCcccccchHHHHHHHHHhh
Q 011587 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR----------SSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207 (482)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~ 207 (482)
. ++..-+-.+..+++.+++++|.+.+..+... +-..|.-+-....+... .+.--....+++.+.
T Consensus 167 ~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~--~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 167 V----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD--KVQSLNVDAIIRGGI 240 (835)
T ss_pred c----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc--hhcccCHHHHHHhhc
Confidence 4 4455778888889999999999888877632 34456665555555222 222223344455543
Q ss_pred hccCCCCcCHH--HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----------------CC-
Q 011587 208 VDVSGVKPTDT--TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----------------CG- 268 (482)
Q Consensus 208 ~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----------------~g- 268 (482)
+.-+|.. .|.+|.+-|.+.|.++.|..+|++....-. +..-|..+-++|+. .|
T Consensus 241 ----~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~----tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 241 ----RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM----TVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred ----ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe----ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 4455543 677888888899999999888888776543 33334444444432 11
Q ss_pred -----ChHHHHHHHHhccC---------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------HHH
Q 011587 269 -----CLDNALLIFSRMRE---------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN------AVT 322 (482)
Q Consensus 269 -----~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~ 322 (482)
+++-....|+.+.. .++..|..-+.. ..|+..+....+.+.... +.|. ...
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~L 389 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTL 389 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhH
Confidence 22333334444332 133444443332 346677777777777654 3332 235
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC---HHHHHHHHHHHhccCCHHHHHHHHHcCCCCC-------------
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH---IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP------------- 386 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p------------- 386 (482)
|..+.+-|-..|+++.|..+|++..+- .++-- ..+|....+.=.+..+++.|+++++.....|
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 667777888889999999999988873 43322 3455555555566778888888887762111
Q ss_pred -------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 387 -------DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 387 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...|..++...-..|-++....++++++++..
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 223455555555556666666666666666544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-06 Score=74.75 Aligned_cols=369 Identities=10% Similarity=0.016 Sum_probs=175.7
Q ss_pred CChHHHHHHhhcCC---CCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFD---PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~---~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
|++++|..+++... .++...+-.+--+ |.+.+|..+-....+ ++--...++....+.+ + -++-.
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k------~pL~~RLlfhlahkln-d--Ek~~~ 141 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLN-D--EKRIL 141 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhC-c--HHHHH
Confidence 66777666666544 1222222211111 555555555333321 3333333444444444 4 44444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC--CchhHHHHH-HHHhcCCcccccchHHHHHHHHHh
Q 011587 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR--SSATWNAMI-NGYCSQSKKAKDCAFNALVLFRDM 206 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li-~~~~~~~~~~~~~~~~a~~~~~~m 206 (482)
.+++.+.. +..-.-+|.....-.-.+.+|.+++.++... .-...|.-+ -+|.+ ..-++-+.++++-.
T Consensus 142 ~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-----lDYydvsqevl~vY 211 (557)
T KOG3785|consen 142 TFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-----LDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-----cchhhhHHHHHHHH
Confidence 44443332 1233334555544556678888888877643 333444433 34555 66666666666655
Q ss_pred hhccCCCCcCHHHHHHHHHHhhcc--CchHHHH------------HHHHHHHHhCC------------CCC---CchhHH
Q 011587 207 LVDVSGVKPTDTTMVCVLSVSSQL--GLLEFGA------------CVHGYMEKTFY------------MPE---NDVFIG 257 (482)
Q Consensus 207 ~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~------------~~~~~~~~~~~------------~p~---~~~~~~ 257 (482)
. ..++.+....+.......+. |+..+.+ ...+.+.++++ .|+ .-+..-
T Consensus 212 L---~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEAR 288 (557)
T KOG3785|consen 212 L---RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEAR 288 (557)
T ss_pred H---HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhh
Confidence 3 12333333444333333222 2211111 01112222211 110 011223
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG-------KGNEAIRLLDSMRDCGVKPNA-VTFTSLFAA 329 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 329 (482)
..|+-.|.+.+++++|..+.+++...++.-|-.-.-.++..| ...-|.+.|+-.-+.+..-|. .--.++.++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 445666788899999999888876544333322222222222 244455555554444332221 112233344
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCC-CCHHHHHH-HHHHHHhcCCHhH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-PDAILWRS-LLSACNVHGDVAL 406 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~-l~~~~~~~g~~~~ 406 (482)
+.-..+++++..+++.+.. +-..-|. .--.+..+++..|...+|+++|-.+ +-+ .|..+|.+ |.++|.+.+..+.
T Consensus 369 fFL~~qFddVl~YlnSi~s-YF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIES-YFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 4444566667766666666 2333233 3334566777777777777777666 211 24555544 3445666777766
Q ss_pred HHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 407 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
|..++- +.+.. .........+++-|.+++.+--|-+.|+.+..
T Consensus 447 AW~~~l---k~~t~------~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 447 AWDMML---KTNTP------SERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHH---hcCCc------hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 655543 33320 01122233445566777777777777776663
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-07 Score=75.18 Aligned_cols=196 Identities=13% Similarity=-0.002 Sum_probs=165.4
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGM 295 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 295 (482)
+..-+.-.|...|+...|..-+++.+++. +.+..+|..+...|-+.|+.+.|.+-|++..+ .+..+.|...-.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 45567788999999999999999999998 77889999999999999999999999998874 4667888888889
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
|..|++++|...|++....-.-| -..+|..+.-+..+.|+.+.|...|++..+ -.+........+.....+.|+...
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988752211 245777788888899999999999999998 345556678888899999999999
Q ss_pred HHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 375 AYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 375 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|..+++.. +..++..+.-..|+.....||.+.+.+.=..+.+..|
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99998877 4457888888888888899999988887777777766
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-05 Score=76.54 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=69.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHH
Q 011587 360 SCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437 (482)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 437 (482)
......+.+.+..++|...+.+. ++.| ....|......+...|..++|.+.|..+...+| .+.....++.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP--------~hv~s~~Ala 725 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP--------DHVPSMTALA 725 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC--------CCcHHHHHHH
Confidence 34445556666666666666555 3334 455666666667788999999999999999999 7888999999
Q ss_pred HHHHhCCCchHHHH--HHHHhHhcCC
Q 011587 438 NIYASAERWPDVES--VRKQMKVKRV 461 (482)
Q Consensus 438 ~~~~~~g~~~~a~~--~~~~m~~~~~ 461 (482)
.++.+.|+-.-|.. ++.++.+.+.
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 99999998777777 8888776554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-08 Score=89.06 Aligned_cols=219 Identities=17% Similarity=0.070 Sum_probs=178.3
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChH
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 302 (482)
-+.+.|++.+|.-.|+..++.. |.+...|.-|.......++-..|+..+++..+ .|..+.-.|.-+|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 3457788999999999999988 88999999999999999999999999998875 36778888888999999999
Q ss_pred HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 303 EAIRLLDSMRDCGVK--------PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
.|..+++.-+....+ ++...-.. ..+..........++|-++....+..+|......|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999988664321 00000000 22333344556677777777655656788889999999999999999
Q ss_pred HHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 375 AYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 375 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
|.+.|+.. .++| |..+||-|...++...+.++|...|++++++.| .-.++..-|...|...|.|++|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--------~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP--------GYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC--------CeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999988 7778 778999999999999999999999999999999 6677778899999999999999987
Q ss_pred HHHhH
Q 011587 453 RKQMK 457 (482)
Q Consensus 453 ~~~m~ 457 (482)
|-...
T Consensus 521 lL~AL 525 (579)
T KOG1125|consen 521 LLEAL 525 (579)
T ss_pred HHHHH
Confidence 66544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-06 Score=76.34 Aligned_cols=304 Identities=10% Similarity=-0.072 Sum_probs=175.6
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCC-CCch-hHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-MFNV-LVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWN 179 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 179 (482)
....|..+...+...+ + .+.+.+.+....+... .++. .........+...|++++|.+++++..+ | +...+.
T Consensus 5 ~~~a~~~~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 5 FALGHAAAALLLLLGG-E--RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred cHHHHHHHHHHHHhcC-C--cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3444555555555555 5 6665555555544321 2222 1222223345677888888888877653 3 333333
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
. ...+...+.. .+....+.+.+... ....+........+...+...|+++.|...+++..+.. +.+...+..
T Consensus 82 ~-~~~~~~~~~~-~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~ 153 (355)
T cd05804 82 L-HLGAFGLGDF-SGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHA 153 (355)
T ss_pred H-hHHHHHhccc-ccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHH
Confidence 2 1122221111 44455555555542 22223334455566678888999999999999999887 667778888
Q ss_pred HHHHHHcCCChHHHHHHHHhccC-----CCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE-----KNV--LTWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPNAVTF-T--SLFA 328 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~ 328 (482)
+..+|...|++++|..++++..+ ++. ..|..+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 99999999999999999988764 122 3455778889999999999999999864432 1222211 1 2233
Q ss_pred HHhccCcHHHHHHH--HHHhHHhcCC--CcCHHHHHHHHHHHhccCCHHHHHHHHHcC---CCC-----C---CHHHHHH
Q 011587 329 ACCHAGLVEEGLHL--FDNMKSKWGV--EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PIK-----P---DAILWRS 393 (482)
Q Consensus 329 ~~~~~~~~~~a~~~--~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~-----p---~~~~~~~ 393 (482)
-+...|....+.++ +...... .. ............++...|+.++|..+++.+ ... . .....-.
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 33334433333322 1111110 11 111222234666778889999999998776 111 0 1111122
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
..-++...|+.++|.+.+.+++.....
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223356889999999999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-07 Score=77.10 Aligned_cols=291 Identities=12% Similarity=0.023 Sum_probs=170.7
Q ss_pred CCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--CCch
Q 011587 99 KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSA 176 (482)
Q Consensus 99 ~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 176 (482)
.|+.. ...-+.+++..+.+.. + +..|.+++..-.+.. +.+....+.|..+|....++..|-+.++++.. |...
T Consensus 4 ~g~~i-~EGeftaviy~lI~d~-r--y~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 4 SGAQI-PEGEFTAVVYRLIRDA-R--YADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 78 (459)
T ss_pred ccccC-CCCchHHHHHHHHHHh-h--HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 34444 4445777777777776 6 888888888777663 33677778888888888888888888888764 3333
Q ss_pred hHHHH-HHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHH--hhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 177 TWNAM-INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV--SSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 177 ~~~~l-i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
-|... ...+.+ .+.+..|+.+...|. +. |+...-..-+.+ ....+++..+..+.++.-..+ +
T Consensus 79 qYrlY~AQSLY~-----A~i~ADALrV~~~~~--D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-----~ 143 (459)
T KOG4340|consen 79 QYRLYQAQSLYK-----ACIYADALRVAFLLL--DN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-----E 143 (459)
T ss_pred HHHHHHHHHHHH-----hcccHHHHHHHHHhc--CC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-----c
Confidence 33321 234455 777888888888885 21 222211111111 235567777777776654332 4
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------------
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK------------ 317 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~------------ 317 (482)
..+.+.......+.|+++.|.+-|+...+ .....||.-+.- .+.|+++.|++...+++++|++
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 44555566666788888888888887765 344566655544 4557888888888888888764
Q ss_pred -CCHH--------HHHHHHHH-------HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc--CCHHHHHHHH
Q 011587 318 -PNAV--------TFTSLFAA-------CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA--GHLEEAYNFI 379 (482)
Q Consensus 318 -p~~~--------~~~~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~ 379 (482)
||+. .-+.++.+ +.+.++.+.|.+.+-.|.-+..-..|+.|...+.-.=... +.--+-++++
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFL 302 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHH
Confidence 1211 11222222 3355666666666666655434445555555443322221 1111112222
Q ss_pred HcCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 380 MGIPIKP-DAILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 380 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
-+. .| -..||..++-.|++..-++.|-+++.
T Consensus 303 L~~--nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 303 LQQ--NPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred Hhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 222 33 34566666667777666666666554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-07 Score=84.56 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=73.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cC
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AG 370 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 370 (482)
+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+- . +..+...+..++.. .+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~-eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI---D-EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---S-CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C-CcHHHHHHHHHHHHHHhCch
Confidence 44455666665555431 23444445555566666666666666665541 1 22233334433322 22
Q ss_pred CHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc-h
Q 011587 371 HLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW-P 447 (482)
Q Consensus 371 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 447 (482)
.+.+|..+|+++ ...++..+.+.+..+....|++++|++++.++.+.++ .++.+...++.+....|+. +
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~--------~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP--------NDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C--------CHHHHHHHHHHHHHHTT-TCH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHhCCChh
Confidence 455666666665 3334555556666566666666666666666655555 4555555555555555555 4
Q ss_pred HHHHHHHHhHh
Q 011587 448 DVESVRKQMKV 458 (482)
Q Consensus 448 ~a~~~~~~m~~ 458 (482)
.+.+.+.+++.
T Consensus 254 ~~~~~l~qL~~ 264 (290)
T PF04733_consen 254 AAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-07 Score=92.93 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=116.7
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 322 (482)
|.....|-..|......+++++|.+++++... .-...|.++++.-..-|.-+...++|+++-+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 44555566666666666666666666666542 122355555555555555566666666665531 1 2234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC---CHHHHHHHHHHH
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP---DAILWRSLLSAC 398 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 398 (482)
|..|...|.+.+..++|.++++.|.++++ .....|..++..+.+.++-+.|.+++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 55666666666666666666666666444 44556666666666666666666666555 2222 233334444445
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
.+.||.+++..+|+..+...| .....|+.+++.-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP--------KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP--------KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc--------cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666666666666666 455666666666666666666666666666655544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-06 Score=77.98 Aligned_cols=305 Identities=13% Similarity=-0.001 Sum_probs=182.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC---CCCchh---HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMP---MRSSAT---WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~ 217 (482)
...|..+...+...|+.+.+.+.+.... .++... .......+.. .|++++|.+.+++.. .. .+.|.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~-----~g~~~~A~~~~~~~l--~~-~P~~~ 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWI-----AGDLPKALALLEQLL--DD-YPRDL 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--HH-CCCcH
Confidence 4456666677777787777666665543 112221 1122233455 889999999999986 32 22344
Q ss_pred HHHHH---HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHH
Q 011587 218 TTMVC---VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAM 291 (482)
Q Consensus 218 ~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 291 (482)
..+.. ........+..+.+.+.+... .... +........+...+...|++++|...+++..+ .+...+..+
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLW--APEN-PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhcc--CcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 34442 122222344555555555441 1111 33444555677789999999999999999875 356678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHH-H--HHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGV-KPNA--VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY-S--CIVDL 365 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~ 365 (482)
...+...|++++|...+++...... .|+. ..|..+...+...|+.++|..++++........+..... + .++.-
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 8999999999999999999877532 2332 345567888999999999999999986521111222211 1 22333
Q ss_pred HhccCCHHHHHHH--H-HcC--CCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcc-cccccCCchhHHHHH
Q 011587 366 LGRAGHLEEAYNF--I-MGI--PIK--PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT-FVDVACTSEDFVALS 437 (482)
Q Consensus 366 ~~~~g~~~~A~~~--~-~~~--~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 437 (482)
+...|....+.++ + ... ... ...........++...|+.+.|..+++.+........ ...............
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A 314 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA 314 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH
Confidence 3334433322222 1 111 111 1112222456677889999999999999877443100 000011233444555
Q ss_pred HHHHhCCCchHHHHHHHHhHhc
Q 011587 438 NIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.++...|++++|.+.+......
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6677999999999998877643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.8e-07 Score=79.23 Aligned_cols=221 Identities=12% Similarity=0.024 Sum_probs=129.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHH
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVC 222 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~ 222 (482)
.....-+.+++...|+.+.+..-...-..|.......+...+.. .++-+.++.-+++.. .....+ +......
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~-----~~~~e~~l~~l~~~~--~~~~~~~~~~~~~~ 107 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSS-----PSDKESALEELKELL--ADQAGESNEIVQLL 107 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCT-----STTHHCHHHHHHHCC--CTS---CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhC-----ccchHHHHHHHHHHH--HhccccccHHHHHH
Confidence 33445566777778887776666655555666665555544433 344555666565544 333332 2222233
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-CHHHHHHHHHHHH----h
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMA----I 297 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~ 297 (482)
....+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+- +..+...+..++. -
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 334556677888777766431 24556666777888888888888888887752 2223333333332 2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH-HHHH
Q 011587 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL-EEAY 376 (482)
Q Consensus 298 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~ 376 (482)
.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+... .-+-+..+...++....-.|+. +.+.
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 33578888888887654 456777777777788888888888888887765 2344555666666666666766 5666
Q ss_pred HHHHcC
Q 011587 377 NFIMGI 382 (482)
Q Consensus 377 ~~~~~~ 382 (482)
+++.++
T Consensus 257 ~~l~qL 262 (290)
T PF04733_consen 257 RYLSQL 262 (290)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 777776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.6e-06 Score=71.70 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHH-HHHHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS-CIVDLL 366 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~ 366 (482)
-.++.+++.-..++++++-.++....-=..-|...|| +.++++..|++.+|+++|-.+... .++ |..+|. .|.++|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCy 438 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCY 438 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHH
Confidence 3444444444555666666666655542232333333 556666667777777666665541 222 334443 344566
Q ss_pred hccCCHHHHHHHHHcCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 367 GRAGHLEEAYNFIMGIPIKPDAILWR-SLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.++++++.|++++-++.-..+..+.- .+..-|.+.+.+--|-+.|+.+...+|
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 66677777776666664233333332 233346666666666666666666655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-05 Score=71.69 Aligned_cols=381 Identities=9% Similarity=0.003 Sum_probs=214.2
Q ss_pred HhcCCCCCChHHHHHHhhcCC--CCCh-h-hHHHH---hcCCCCccHHHHHHHHHHCCCCCCChhhHHH--HHHHhhhcc
Q 011587 50 CTKKASPQSTKIVHFVFTHFD--PPNL-F-LFNTL---IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVF--ALGSCARFC 120 (482)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~--~~~~-~-~~~~l---l~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~--ll~~~~~~~ 120 (482)
..+...+|++++|.+....+. .||. . .+.-+ |..+++++|+.+.+.-.. . .+++. +=++||..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~----~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---L----LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---h----hhcchhhHHHHHHHHH
Confidence 333344499999988777665 2222 2 22222 333888888855443221 1 12222 467777766
Q ss_pred CcchhhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHH
Q 011587 121 SLSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199 (482)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a 199 (482)
.++.++|...++ |..+ +..+...-...+.+.|++++|.++|+.+.+.+...+...+.+-+. .- ..+
T Consensus 92 -lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-----a~--~a~ 158 (652)
T KOG2376|consen 92 -LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-----AV--AAA 158 (652)
T ss_pred -cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-----HH--HHh
Confidence 666898888877 3333 334566666778899999999999999987766666665554333 10 011
Q ss_pred HHHHHHhhhccCCCCcCHHHHHHHHH---HhhccCchHHHHHHHHHHHHhCC-------CCCCch-----hHHHHHHHHH
Q 011587 200 LVLFRDMLVDVSGVKPTDTTMVCVLS---VSSQLGLLEFGACVHGYMEKTFY-------MPENDV-----FIGTALVDMY 264 (482)
Q Consensus 200 ~~~~~~m~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~p~~~~-----~~~~~li~~~ 264 (482)
..+ +.+. .....| ..+|..+.+ .+...|++.+|+++++...+.+. ..+.+. ..-.-|.-++
T Consensus 159 l~~-~~~q--~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 159 LQV-QLLQ--SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hhH-HHHH--hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 111 1232 333444 335554443 44678999999999999843221 000111 1123345567
Q ss_pred HcCCChHHHHHHHHhccCC---CHH----HHHHHHHHHHh----------------------------------------
Q 011587 265 SKCGCLDNALLIFSRMREK---NVL----TWTAMATGMAI---------------------------------------- 297 (482)
Q Consensus 265 ~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---------------------------------------- 297 (482)
-..|+.++|.++|..+.+. |.. .-|.|+..-.-
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999887641 211 11111110000
Q ss_pred -----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhcc
Q 011587 298 -----HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH--AGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRA 369 (482)
Q Consensus 298 -----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 369 (482)
.+.-+.+.++-... -+..|. ..+.+++..+.+ ...+..+..++....+ +.+-+ ..+.-.++......
T Consensus 315 lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhc
Confidence 00001111111000 011222 334444443332 2246777888777776 33333 44556667778899
Q ss_pred CCHHHHHHHHH--------cC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 370 GHLEEAYNFIM--------GI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 370 g~~~~A~~~~~--------~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
|+++.|.+++. .. .+.-.+.+...+...+.+.++.+.|..++.+++.--..-. .+-..-..++.-++..-
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~-t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ-TGSIALLSLMREAAEFK 468 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc-ccchHHHhHHHHHhHHH
Confidence 99999999988 33 2233344555577778888888888888887765211000 00002233445555666
Q ss_pred HhCCCchHHHHHHHHhHhcC
Q 011587 441 ASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+.|+.++|..+++++.+.+
T Consensus 469 lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HhcCchHHHHHHHHHHHHhC
Confidence 78899999999999998643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-05 Score=74.61 Aligned_cols=172 Identities=5% Similarity=-0.026 Sum_probs=104.8
Q ss_pred ChhhHHHHHHHhc----cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-----------
Q 011587 6 GHRCFALLKLKAI----TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD----------- 70 (482)
Q Consensus 6 ~~~~~~~~l~~~~----~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~----------- 70 (482)
|..|--.+|.... |+.+.|.+...... +-.++.-|..+|.+. .++|.|.-.+-.|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT---~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKT---RRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhh---ccccHHHHhhhhhhhhhhHHHHHHH
Confidence 5666677776655 78877765544433 345667777788777 77777776666654
Q ss_pred --CCChh-hHHHHhcC--CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh
Q 011587 71 --PPNLF-LFNTLIRC--TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145 (482)
Q Consensus 71 --~~~~~-~~~~ll~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (482)
.++.. .--+.+.. |..++|..+|.+-++.+ .+-+.|-..| . +++|.++-+.-.+..+ ..
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g-~--w~eA~eiAE~~DRiHL---r~ 859 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQG-M--WSEAFEIAETKDRIHL---RN 859 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcc-c--HHHHHHHHhhccceeh---hh
Confidence 22211 11122222 88999999998887632 2333444455 6 8888887654333222 34
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCC-----------------------CchhHHHHHHHHhcCCcccccchHHHHHH
Q 011587 146 VATTLIHFYASNKDISSGKKVFDQMPMR-----------------------SSATWNAMINGYCSQSKKAKDCAFNALVL 202 (482)
Q Consensus 146 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~~~~~~~~~a~~~ 202 (482)
+|......+-..+|++.|++.|+....+ |...|.-....+-. .|+.+.|+.+
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES-----~GemdaAl~~ 934 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES-----VGEMDAALSF 934 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc-----ccchHHHHHH
Confidence 5666666667788888888888765321 33333333333334 7777788888
Q ss_pred HHHhh
Q 011587 203 FRDML 207 (482)
Q Consensus 203 ~~~m~ 207 (482)
|...+
T Consensus 935 Y~~A~ 939 (1416)
T KOG3617|consen 935 YSSAK 939 (1416)
T ss_pred HHHhh
Confidence 77765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-05 Score=72.46 Aligned_cols=387 Identities=13% Similarity=0.111 Sum_probs=240.3
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHhhcCC-CCChhhHHHH-hcC-CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhc
Q 011587 43 AQLIQLYCTKKASPQSTKIVHFVFTHFD-PPNLFLFNTL-IRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARF 119 (482)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l-l~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~ 119 (482)
+..++..|-..+-...+..+.+++...+ .++..+---+ +.. |+-++|.+....-.+.++. +...|..+ ..+.+.
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~-gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVL-GLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc--cchhHHHH-HHHHhh
Confidence 3445555544322233555555665544 3343332222 222 9999999998888775533 45555544 444444
Q ss_pred cCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHHHHHHhcCCcccccch
Q 011587 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCA 196 (482)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~ 196 (482)
.++ +++|.+.+....+.+ +-|...+.-+.-.-+..|+++.....-....+ .....|..+..++.- .|+.
T Consensus 88 dK~--Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-----~g~y 159 (700)
T KOG1156|consen 88 DKK--YDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-----LGEY 159 (700)
T ss_pred hhh--HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----HHHH
Confidence 437 999999999999875 55777777777777777888877776666553 255678888888888 8999
Q ss_pred HHHHHHHHHhhhccCC-CCcCHHHHHHHHH------HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 197 FNALVLFRDMLVDVSG-VKPTDTTMVCVLS------VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 197 ~~a~~~~~~m~~~~~~-~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
..|..+++... ... -.|+...+..... .....|..+.|.+.+..-...- ......-..-...+.+.++
T Consensus 160 ~~A~~il~ef~--~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i---~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 160 KMALEILEEFE--KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI---VDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHH--HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH---HHHHHHhhhHHHHHHHHhh
Confidence 99999999987 333 3566666554433 2345677777776665544332 1233334556778899999
Q ss_pred hHHHHHHHHhccC--CCHHHHHHH-HHHHHhcCChHHHH-HHHHHHHhCC---CCCCHHHHHHHHHHHhccCcHHHHHHH
Q 011587 270 LDNALLIFSRMRE--KNVLTWTAM-ATGMAIHGKGNEAI-RLLDSMRDCG---VKPNAVTFTSLFAACCHAGLVEEGLHL 342 (482)
Q Consensus 270 ~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~ 342 (482)
+++|..+|..+.. ||...|... ..++.+..+..++. .+|....+.= ..|-.... .......-.+....+
T Consensus 235 lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdky 310 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKY 310 (700)
T ss_pred HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHH
Confidence 9999999999986 555555444 44554333333444 6666655431 11211111 111222334455566
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH----HHHHHHcC-C------------CCCCHHHHH--HHHHHHHhcCC
Q 011587 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE----AYNFIMGI-P------------IKPDAILWR--SLLSACNVHGD 403 (482)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~--~l~~~~~~~g~ 403 (482)
+..+.++ |+++-- ..+...|-.....+- +..+...+ + -+|....|. -++..+-+.|+
T Consensus 311 L~~~l~K-g~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 311 LRPLLSK-GVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHhhc-CCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 7777774 776533 333333332222211 12222222 1 246666554 45667889999
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
++.|+..++.++..-| .-.+.|..=++.+...|..++|..++++..+.+.
T Consensus 387 ~~~A~~yId~AIdHTP--------TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTP--------TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHHhccCc--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999888 5567777788999999999999999998775543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.5e-06 Score=70.82 Aligned_cols=316 Identities=9% Similarity=-0.068 Sum_probs=211.5
Q ss_pred HhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHH-HHHHHhCC
Q 011587 80 LIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTL-IHFYASNK 158 (482)
Q Consensus 80 ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g 158 (482)
+|.-.++++|++++..-.++. |.+......+-..|.... + +..|-..++++-.. .|...-|... ...+.+.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q-~--f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQ-E--FALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 344489999999999888865 436677777777788877 8 99999999999876 4555444432 35667889
Q ss_pred ChhHHHHHhccCCCC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHH
Q 011587 159 DISSGKKVFDQMPMR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237 (482)
Q Consensus 159 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 237 (482)
.+..|+.+...|... +...-..-+.+..+- ..+++..+..++++.. . .-+..+.+.......+.|+++.|.
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkY---se~Dl~g~rsLveQlp--~---en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKY---SEGDLPGSRSLVEQLP--S---ENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---ccccCcchHHHHHhcc--C---CCccchhccchheeeccccHHHHH
Confidence 999999999998863 333222223333221 1677778888888764 2 234555556666667999999999
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----------------CCH---------------
Q 011587 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----------------KNV--------------- 285 (482)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------~~~--------------- 285 (482)
+-|+...+.+- -.....|+.. -+..+.|+++.|+++..++.+ +|+
T Consensus 165 qkFqaAlqvsG--yqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 165 QKFQAALQVSG--YQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHhhcC--CCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999888653 2234555544 456677899999999888763 121
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+|.-...+.+.|+++.|.+.+-.|--+ ....|++|...+.-.= -.+++....+-+.-+... -+--..||..++-
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLl 318 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLL 318 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHH
Confidence 13444444567889999999988888422 2344667765544332 234555666666666663 2334679999999
Q ss_pred HHhccCCHHHHHHHHHcCC---CC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 365 LLGRAGHLEEAYNFIMGIP---IK-PDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~---~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.||+..-++.|.+++-+-. .+ .+...|+.|=..-...-..++|++-++.+..
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999998762 11 2555565443333345577788777766544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00012 Score=72.84 Aligned_cols=357 Identities=10% Similarity=0.024 Sum_probs=231.0
Q ss_pred ChhhHHHHHHHhc--cCcchHHHHHHHHHHh--cCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCCh-hhHHHH
Q 011587 6 GHRCFALLKLKAI--TTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL-FLFNTL 80 (482)
Q Consensus 6 ~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l 80 (482)
|+...+..+++.- +-+.+.-++++...-. -+.-+....++|+-...+ -+.....+..+++..-|. ..-+..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik----ad~trVm~YI~rLdnyDa~~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK----ADRTRVMEYINRLDNYDAPDIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh----cChHHHHHHHHHhccCCchhHHHHH
Confidence 5555666666653 3344555555555533 244555566777766665 466677777776653332 235566
Q ss_pred hcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 011587 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160 (482)
Q Consensus 81 l~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 160 (482)
|..+-+++|..+|....- +......++.-.. + ++.|.+.-+++- .+.+|+.+..+-.+.|.+
T Consensus 1059 i~~~LyEEAF~ifkkf~~------n~~A~~VLie~i~----~--ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDM------NVSAIQVLIENIG----S--LDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred hhhhHHHHHHHHHHHhcc------cHHHHHHHHHHhh----h--HHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 666888999999987654 5566666665433 4 667776655442 456899999999999999
Q ss_pred hHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
.+|.+-|-+. .|+..|.-.+....+ .|.|++-++.+...+ +....|...+ .++-+|++.+++.+.++++
T Consensus 1121 ~dAieSyika--dDps~y~eVi~~a~~-----~~~~edLv~yL~MaR--kk~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA--DDPSNYLEVIDVASR-----TGKYEDLVKYLLMAR--KKVREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHhc--CCcHHHHHHHHHHHh-----cCcHHHHHHHHHHHH--HhhcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 9999888554 477888899999999 999999999888877 6666666553 5778888888887766654
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC------------------------CCHHHHHHHHHHHH
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------------------------KNVLTWTAMATGMA 296 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~ 296 (482)
. .|+......+.+-|...|.++.|.-+|..+.. .+..+|-.+-.+|.
T Consensus 1190 ~---------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1190 A---------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred c---------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 2 34666666667777777777777766665542 24556776666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-cCHHHHHHHHHHHhccCCHHHH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE-PHIKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 375 (482)
..+.+.-|. |--.++...+.-..-++..|...|-+++...+++... |++ ...-.|+.|.-.|.+- ++++.
T Consensus 1261 d~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky-kp~km 1331 (1666)
T KOG0985|consen 1261 DKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY-KPEKM 1331 (1666)
T ss_pred chhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc-CHHHH
Confidence 655544332 2222334456667889999999999999998887764 333 3445777777777764 34444
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 376 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.+-++-.--+.+ .-.+++++-+..-+.+..-++....+
T Consensus 1332 ~EHl~LFwsRvN---ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1332 MEHLKLFWSRVN---IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333322200111 12367777776666666655554433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-05 Score=72.94 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=161.1
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCCh
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKG 301 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 301 (482)
.+...++.+.|.....++++.. +.+..+|+....++...| ++++++..++++.+ .+..+|+...-.+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 3445678888999999998887 677778888777777777 67999999998874 3556777665556666653
Q ss_pred --HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc---CCH----
Q 011587 302 --NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA---GHL---- 372 (482)
Q Consensus 302 --~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~---- 372 (482)
+++..+++++.+...+ +..+|+....++.+.|+++++++.++++.+. . +-|...|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccH
Confidence 6788899898887644 7788888888888889999999999999984 3 44566776666555544 222
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhc----CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC--
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVH----GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE-- 444 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 444 (482)
++++++..++ ...| |...|+-+...+... +...+|...+.++.+.++ .+......|++.|+...
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~--------~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS--------NHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC--------CcHHHHHHHHHHHHhhhcc
Confidence 4566666444 4455 677888777777663 345678888998888777 78888999999998642
Q ss_pred ----------------CchHHHHHHHHhH
Q 011587 445 ----------------RWPDVESVRKQMK 457 (482)
Q Consensus 445 ----------------~~~~a~~~~~~m~ 457 (482)
..++|.++++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2367888888884
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-08 Score=57.05 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=28.7
Q ss_pred hCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
.|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00011 Score=78.38 Aligned_cols=326 Identities=9% Similarity=-0.069 Sum_probs=202.4
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCC------CCc--hhHHHHHHHHHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF------MFN--VLVATTLIHFYA 155 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 155 (482)
|++..+...+..+....... ++.........+...+ + ++++..++....+.-- .+. ......+...+.
T Consensus 388 g~~~~l~~~l~~lp~~~~~~-~~~l~~~~a~~~~~~g-~--~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 388 GELSLLEECLNALPWEVLLE-NPRLVLLQAWLAQSQH-R--YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred CChHHHHHHHHhCCHHHHhc-CcchHHHHHHHHHHCC-C--HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 66666666665553211111 2333333333344444 5 9999999888765311 111 122233345567
Q ss_pred hCCChhHHHHHhccCCC----CCc----hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCC-CcCHHHHHHHH
Q 011587 156 SNKDISSGKKVFDQMPM----RSS----ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGV-KPTDTTMVCVL 224 (482)
Q Consensus 156 ~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~-~p~~~~~~~l~ 224 (482)
..|++++|...+++... .+. ...+.+...+.. .|++++|...+++.... ..|. .+...++..+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 88999999998877532 121 234555566677 89999999998887511 1111 11123455666
Q ss_pred HHhhccCchHHHHHHHHHHHHh----CCCC-CCchhHHHHHHHHHHcCCChHHHHHHHHhccC------C--CHHHHHHH
Q 011587 225 SVSSQLGLLEFGACVHGYMEKT----FYMP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------K--NVLTWTAM 291 (482)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l 291 (482)
..+...|+++.|...+++.... +... ......+..+...+...|++++|...+++... + ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7788899999999998887653 2100 11223345566777888999999999887643 1 12344556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC--CCCCHH--H-H-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC---HHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCG--VKPNAV--T-F-TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH---IKHYSCI 362 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~--~-~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 362 (482)
...+...|++++|...++...... ...... . . ...+..+...|+.+.|...+...... ..... ...+..+
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHH
Confidence 667888999999999998875421 111110 1 0 11224445578999999998776542 11111 1123456
Q ss_pred HHHHhccCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..++...|+.++|...+++. +..+ ...+...+..++...|+.++|...+.++.+...
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 77788999999998888766 3222 234566667778899999999999999999776
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-08 Score=55.97 Aligned_cols=32 Identities=28% Similarity=0.648 Sum_probs=15.4
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-05 Score=82.84 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=180.9
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCChHHHHHHHHhccCC--CHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP--ENDVFIGTALVDMYSKCGCLDNALLIFSRMREK--NVLTWTAM 291 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 291 (482)
....|-.-|......++.++|.++.++++..-..- +.-...|.++++.-..-|.-+...++|++..+- ...+|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44578888888999999999999999988643100 224567888888888888889999999999873 35689999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHhcc
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP--HIKHYSCIVDLLGRA 369 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 369 (482)
...|.+.+++++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.++.+ -++- ......-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhc
Confidence 99999999999999999999875 334677899999999999999999999999998 3332 344555566667789
Q ss_pred CCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCch
Q 011587 370 GHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447 (482)
Q Consensus 370 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (482)
|+.+.+..+|+.. ..+.-...|+.++..-.++|+.+.++.+|++++.++..++ .--..|...+..-.+.|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k-----kmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK-----KMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh-----HhHHHHHHHHHHHHhcCchh
Confidence 9999999999988 3334677899999999999999999999999999988421 22446667776666667755
Q ss_pred HHHHH
Q 011587 448 DVESV 452 (482)
Q Consensus 448 ~a~~~ 452 (482)
.++.+
T Consensus 1689 ~vE~V 1693 (1710)
T KOG1070|consen 1689 NVEYV 1693 (1710)
T ss_pred hHHHH
Confidence 44433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-05 Score=70.67 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=43.8
Q ss_pred CCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--CCchhHHH
Q 011587 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSATWNA 180 (482)
Q Consensus 103 p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 180 (482)
|.|..+|+.++.-+.... .+++++.+++++.. ++.+...|...+..-.+..+++..+.+|.+... -+...|..
T Consensus 17 P~di~sw~~lire~qt~~----~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQP----IDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccCC----HHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 446666666666544332 66666666666643 233455666666666666666666666666542 24555555
Q ss_pred HHH
Q 011587 181 MIN 183 (482)
Q Consensus 181 li~ 183 (482)
-+.
T Consensus 92 Yl~ 94 (656)
T KOG1914|consen 92 YLS 94 (656)
T ss_pred HHH
Confidence 554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.9e-05 Score=70.53 Aligned_cols=368 Identities=11% Similarity=0.026 Sum_probs=177.4
Q ss_pred CChHHHHHHhhcCC---CCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFD---PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~---~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
|+++.|...|..-. .+|.+.|+.-..+ |++++|++=-.+-++ +.|.=+..|+-.-.++...| + +++|.
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg-~--~~eA~ 90 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLG-D--YEEAI 90 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcc-c--HHHHH
Confidence 88888888887654 2334444333333 777777776666665 34534566777777766666 6 88888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccC------C-CC------CchhHHHHHHHHhcCCc-----c
Q 011587 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM------P-MR------SSATWNAMINGYCSQSK-----K 191 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~-~~------~~~~~~~li~~~~~~~~-----~ 191 (482)
.-|.+-++.. +.|...++-+..++... . .+.+.|..- . .| ....|..++..+-+... .
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 8888877763 44566677777766111 0 112222110 0 01 12234444433322110 0
Q ss_pred cccchHHHHHHHHHhhhc---cC-------CCCc------------C----------HHHHHHHHHHhhccCchHHHHHH
Q 011587 192 AKDCAFNALVLFRDMLVD---VS-------GVKP------------T----------DTTMVCVLSVSSQLGLLEFGACV 239 (482)
Q Consensus 192 ~~~~~~~a~~~~~~m~~~---~~-------~~~p------------~----------~~~~~~l~~~~~~~~~~~~a~~~ 239 (482)
...+...+..++...... .. +..| | ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 011122222221111000 00 0111 0 11234556666666777777777
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCH---HHHH-------HHHHHHHhcCChHHHHHHHH
Q 011587 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV---LTWT-------AMATGMAIHGKGNEAIRLLD 309 (482)
Q Consensus 240 ~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~-------~li~~~~~~~~~~~a~~~~~ 309 (482)
+....... .+..-++....+|...|.+..+...-+...+..- .-|+ .+..+|.+.++++.++..|.
T Consensus 247 y~~a~el~----~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 247 YAKALELA----TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHhHh----hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 77766654 1555566777778888887777776665544211 1222 23345566677778888777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI-KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP- 386 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 386 (482)
+....-..|+..+ +....+++....+...- +.|.. .-...-...+.+.|++..|...|.++ ...|
T Consensus 323 kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 7655433333221 11112222222211111 11111 01111133344455555555555544 2223
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
|...|..-.-+|.+.|.+..|.+-.+..++++| +....|.-=..++....+|++|.+.|.+-.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p--------~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDP--------NFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555 344444433444444444555555444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00029 Score=65.63 Aligned_cols=401 Identities=11% Similarity=0.072 Sum_probs=207.3
Q ss_pred CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCC--C-ChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhH
Q 011587 37 KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP--P-NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTY 109 (482)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~ 109 (482)
+.|...++.|+.-+.. ..+++++..++.+.. | ....|...|.. .+++....+|.+.+..-. +...|
T Consensus 17 P~di~sw~~lire~qt----~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL---nlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT----QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL---NLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHcc----CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh---hHhHH
Confidence 5677788888887776 478888888888762 3 33456666665 888888888888876532 55666
Q ss_pred HHHHHHhhhccCcchhhhHH----HHHHHHHH-hCCCC-chhHHHHHHHH---------HHhCCChhHHHHHhccCCC-C
Q 011587 110 VFALGSCARFCSLSTLWLGR----QIHVHVTK-RGFMF-NVLVATTLIHF---------YASNKDISSGKKVFDQMPM-R 173 (482)
Q Consensus 110 ~~ll~~~~~~~~~~~~~~a~----~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~ 173 (482)
..-|.-..+..+. ..... +-|+-... .|+.+ +-..|+..+.. |....+++...++++++.. |
T Consensus 90 ~lYl~YVR~~~~~--~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 90 KLYLSYVRETKGK--LFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHccC--cchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 6666554444312 33322 23333332 34333 23345555543 2333456667777777653 2
Q ss_pred ---------CchhHHHHHHHHhc---CCcccccchHHHHHHHHHhhhccCCCCcCHHH---------------HHHHHHH
Q 011587 174 ---------SSATWNAMINGYCS---QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT---------------MVCVLSV 226 (482)
Q Consensus 174 ---------~~~~~~~li~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~---------------~~~l~~~ 226 (482)
|-..|..=|+.... .+.. ...+..|.++++++..-..|...+..+ |-.+|.-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~-s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGER-SPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 11122211111110 0000 334555666666554211232211111 2222221
Q ss_pred hhccC------ch--HHHHHHHHHH-HHhCCCCCCchhHH-----HHHHHHHHcCCCh-------HHHHHHHHhccC---
Q 011587 227 SSQLG------LL--EFGACVHGYM-EKTFYMPENDVFIG-----TALVDMYSKCGCL-------DNALLIFSRMRE--- 282 (482)
Q Consensus 227 ~~~~~------~~--~~a~~~~~~~-~~~~~~p~~~~~~~-----~~li~~~~~~g~~-------~~A~~~~~~~~~--- 282 (482)
--..+ .. ..+.-++++. .-.+. .++.... ...-+.+...|+. +++..++++..+
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~--~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY--HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 11111 00 0111112221 12222 1121110 1111233333433 344445544432
Q ss_pred -CCHHHHHHHHHHHH---hcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc-CH
Q 011587 283 -KNVLTWTAMATGMA---IHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-HI 356 (482)
Q Consensus 283 -~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 356 (482)
.+..+|..+...-- ..++.+....+++++... .+.|+ .+|..++..-.+..-+..|..+|.++.+. +..+ .+
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhV 402 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchh
Confidence 23333333332111 112355666666666543 23333 45666777777777778888888888875 5555 66
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
..+++++..||. ++.+-|.++|+-- ..-+|. .--...+.-+...++-..+..+|++.+....+. ......|.
T Consensus 403 fVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~-----~ks~~Iw~ 476 (656)
T KOG1914|consen 403 FVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA-----DKSKEIWD 476 (656)
T ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh-----hhhHHHHH
Confidence 777777776665 5677778887643 222333 333556666677777777888888877763311 13456788
Q ss_pred HHHHHHHhCCCchHHHHHHHHhH
Q 011587 435 ALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.++..-..-|+...+.++-+++.
T Consensus 477 r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 477 RMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 88887778888877777766554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-05 Score=73.71 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=100.2
Q ss_pred HHHHcCCChHHHHHHHHhccCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 011587 262 DMYSKCGCLDNALLIFSRMREKNV--LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339 (482)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 339 (482)
.+......+.+|+.+++.+...++ .-|..+..-|+..|+++.|.++|-+.- .++-.|..|.+.|+++.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 334445556666666666554332 235556666777777777776665431 233456666777777777
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.++-.+.. |-+.....|-+-..-+-+.|++.+|.+++-.++ .|+. .|..|-+.|..+...++.++- .+
T Consensus 811 ~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k~---h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKH---HG 878 (1636)
T ss_pred HHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHHh---Ch
Confidence 66654443 334445555555555666777777777766665 4443 345566677766666665532 22
Q ss_pred CcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+ --..|...+..-|...|+...|..-|-+..
T Consensus 879 d-------~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 879 D-------HLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred h-------hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 1 224566777888888888888887665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.2e-05 Score=65.48 Aligned_cols=293 Identities=14% Similarity=0.087 Sum_probs=177.0
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHH---HHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHH-HH
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN---GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM-VC 222 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~-~~ 222 (482)
.--+...+...|++..|+.-|....+-|+..|.++.+ .|.. .|+...|+.=+.+.. ..+||-..- ..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA-----mGksk~al~Dl~rVl----elKpDF~~ARiQ 111 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA-----MGKSKAALQDLSRVL----ELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-----hcCCccchhhHHHHH----hcCccHHHHHHH
Confidence 3445555666677777777776666666666655543 3444 555555555555554 345553321 12
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCch------------hHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHH
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDV------------FIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLT 287 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------------~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 287 (482)
-...+.+.|.++.|+.=|+.++++........ ......+..+...||...|+.....+.+ .|...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 23445667777777777777766542100111 1112234455667788888887777764 36777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHH----HHHH-
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH----YSCI- 362 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l- 362 (482)
|..-..+|...|++..|+.=++...+.. .-+..++..+-..+...|+.+.++...++..+ +.|+... |..|
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHH
Confidence 7777788888888888877776665543 23455555566666777777777777776665 3454322 1111
Q ss_pred --------HHHHhccCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccC
Q 011587 363 --------VDLLGRAGHLEEAYNFIMGI-PIKPD-----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428 (482)
Q Consensus 363 --------i~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 428 (482)
+......++|.++++-.+.. ...|. ...+..+-.++...|++.+|++...+++...| .
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~--------~ 339 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP--------D 339 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc--------h
Confidence 12233455666666555544 33443 22344455666777888888888888888887 6
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
|..++.--..+|.-...|++|+.=++...+.+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77788878888888888888887777666443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.5e-06 Score=69.10 Aligned_cols=148 Identities=13% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 340 (482)
+-.|...|+++.+....+.+..+.. .+...++.+++...++...+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4456677776666554433322210 1112455566666666655543 335666666666677777777777
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHH-hccCC--HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLL-GRAGH--LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
..|++..+ -.+-+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|...|++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776666 2233555666666543 45555 36677777666 3344 55566666666667777777777777777
Q ss_pred hcCC
Q 011587 416 QLQP 419 (482)
Q Consensus 416 ~~~~ 419 (482)
+..+
T Consensus 172 ~l~~ 175 (198)
T PRK10370 172 DLNS 175 (198)
T ss_pred hhCC
Confidence 7666
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-05 Score=78.14 Aligned_cols=242 Identities=7% Similarity=-0.040 Sum_probs=160.4
Q ss_pred CCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhHHHHHhccCCCCCchh
Q 011587 99 KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177 (482)
Q Consensus 99 ~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 177 (482)
....|.+...+..|+..+...+ + +++|.++.+...+. .|+ ...|-.+...+...++...+..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~-~--~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------- 87 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSEN-L--TDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------- 87 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcC-C--HHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------
Confidence 3455667788888888887777 7 99999998877765 343 44444444566677775554433
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHH
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 257 (482)
.++..... ..++.-+..++..|. . ..-+...+..+..+|.+.|+.+++..+++++++.. +.+..+.
T Consensus 88 --~~l~~~~~-----~~~~~~ve~~~~~i~--~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aL 153 (906)
T PRK14720 88 --NLIDSFSQ-----NLKWAIVEHICDKIL--L--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIV 153 (906)
T ss_pred --hhhhhccc-----ccchhHHHHHHHHHH--h--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHH
Confidence 34444444 555655555555554 2 33355588888999999999999999999999988 6788889
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 337 (482)
|.+...|... ++++|..++.+.... |...+++.++.++|.++....+. +...|.
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~-----------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~------------- 207 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR-----------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL------------- 207 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH-----------HHhhhcchHHHHHHHHHHhcCcc-cchHHH-------------
Confidence 9999999998 999999887765443 56667888888888888776321 222222
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
++.+.+....|..--..++--+...|...++++++..+++.+ ...| |.....-++.+|.
T Consensus 208 ---~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 208 ---RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ---HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222333332222333445556666777777777777777776 3344 5555666666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0001 Score=78.53 Aligned_cols=305 Identities=11% Similarity=0.031 Sum_probs=191.9
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCC----CCC---c---h--hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCC
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMP----MRS---S---A--TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~---~---~--~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 214 (482)
.......+...|++++|..++.... ..+ . . ....+...+.. .|++++|...++... ..-..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al--~~~~~ 484 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN-----DGDPEEAERLAELAL--AELPL 484 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHH--hcCCC
Confidence 3444555667889999888876542 111 1 1 11122233445 889999999998875 32111
Q ss_pred cCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhCCC---CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----
Q 011587 215 PTD----TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM---PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----- 282 (482)
Q Consensus 215 p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 282 (482)
.+. ...+.+...+...|+++.|...+.+....... +.........+...+...|++++|...+++...
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 121 24455666678899999999998887753210 011223456667788899999999999887653
Q ss_pred --C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 283 --K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 283 --~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
+ ....+..+...+...|++++|...+++.... ...+ ....+..+...+...|+.+.|...+.........
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 1 1223445556677789999999999887542 1112 2334444566777899999999999888652111
Q ss_pred CcCHHHH-----HHHHHHHhccCCHHHHHHHHHcCCC-C-CCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCc
Q 011587 353 EPHIKHY-----SCIVDLLGRAGHLEEAYNFIMGIPI-K-PDA----ILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421 (482)
Q Consensus 353 ~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 421 (482)
......+ ...+..+...|+.+.|.+++..... . ... ..+..+..++...|+.++|...++++.......
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1111111 1122445568899999999877621 1 111 123456667888999999999999988753211
Q ss_pred ccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+. ......+...+..++.+.|+.++|...+.+..+..
T Consensus 725 g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 725 RL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 00 00123466778889999999999999988877543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-06 Score=72.69 Aligned_cols=188 Identities=10% Similarity=-0.043 Sum_probs=129.4
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN-V---LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA--VT 322 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~ 322 (482)
+.....+..+...+...|++++|...|+++.+ |+ . .++..+..++.+.|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44667778888889999999999999988864 32 1 46677888899999999999999999876432111 13
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHH
Q 011587 323 FTSLFAACCHA--------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394 (482)
Q Consensus 323 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 394 (482)
+..+..++.+. |+.++|.+.++.+.+. .+-+...+..+..... ...... .....+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~-----------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLA-----------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence 44445555543 6788888888888874 2222223322221111 111000 011245
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
...+.+.|++++|...++++++..|+. ......+..+..++.+.|++++|...++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDT-----PATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCC-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567889999999999999999987621 1245788899999999999999999999887543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-05 Score=67.39 Aligned_cols=151 Identities=8% Similarity=-0.022 Sum_probs=114.9
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCC
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGK 300 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 300 (482)
+-.|...|+++.+....+.+ .. +.. .+...++.+++...+++..+ .|...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~----~~-~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRL----AD-PLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHH----hC-ccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Confidence 45678899988875443211 10 111 23346778888888887764 478899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCc--HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 011587 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-CHAGL--VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 377 (482)
+++|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+ .-+-+...+..+...+.+.|++++|..
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999987533 677777777764 66677 5999999999998 345577888999999999999999999
Q ss_pred HHHcC--CCCCCHHHH
Q 011587 378 FIMGI--PIKPDAILW 391 (482)
Q Consensus 378 ~~~~~--~~~p~~~~~ 391 (482)
.|+++ ...|+..-+
T Consensus 166 ~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHhhCCCCccHH
Confidence 99998 444555444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-05 Score=66.66 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=93.0
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
|..+ ..+-..+...|+-+....+...... .|.......+....+.|++..|+..|++..... ++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence 4444 4555566666666666665555332 233444556666666677777777776665543 4466666666666
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a 407 (482)
|.+.|+++.|..-|.+..+ -..-+...++.+.-.|.-.|+.+.|..++... .-.-|...-..+..+....|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 7777777777766666666 22334445566666666666777776666655 1112555556666666666776666
Q ss_pred HHHHH
Q 011587 408 EKVGK 412 (482)
Q Consensus 408 ~~~~~ 412 (482)
+++..
T Consensus 222 ~~i~~ 226 (257)
T COG5010 222 EDIAV 226 (257)
T ss_pred Hhhcc
Confidence 66554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.001 Score=65.86 Aligned_cols=384 Identities=13% Similarity=0.136 Sum_probs=205.4
Q ss_pred CChHHHHHHhhcCC--CCChhhHHHHhcC------CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhH
Q 011587 57 QSTKIVHFVFTHFD--PPNLFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128 (482)
Q Consensus 57 ~~~~~a~~~~~~~~--~~~~~~~~~ll~~------~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a 128 (482)
+++..|.+..+... .||.. |...+++ |+.++|..+++.....+.. |..|...+-..|...+ . .++|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~-~--~d~~ 96 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLG-K--LDEA 96 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHh-h--hhHH
Confidence 56667766666654 34432 3333333 8888888777777665433 7777777777777777 7 8888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh----HHHHHhccCCCCCchhHHHHHHHHhcCCc-ccccch----HHH
Q 011587 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS----SGKKVFDQMPMRSSATWNAMINGYCSQSK-KAKDCA----FNA 199 (482)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~----~~a 199 (482)
..+|++.... .|+......+..+|.+.+++. .|.++++..++.--..|+. ++....+-. .+.+.. .-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHH
Confidence 8888888765 456666667777777776654 3667777665544444443 333333211 111111 234
Q ss_pred HHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHh
Q 011587 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 200 ~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
.+.++.+.. +.|---+..-...-...+...|++++|..++.--...... +.+...-+.-+..+...+++.+..++-.+
T Consensus 174 ~~m~~~~l~-~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 174 EKMVQKLLE-KKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-SANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHhc-cCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 445555541 1221112222222233445566777777777332222221 44555556667777777888777777766
Q ss_pred ccCCCHHHHHHHHHHHHh----------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---ccCcHHHHH
Q 011587 280 MREKNVLTWTAMATGMAI----------------HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC---HAGLVEEGL 340 (482)
Q Consensus 280 ~~~~~~~~~~~li~~~~~----------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a~ 340 (482)
+...+..-|...+..+.+ .+..+...+..++..... ....|-+-+.++. .-|+.+++.
T Consensus 252 Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 252 LLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred HHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHH
Confidence 654211113332222111 111222222222222211 1122333333332 346666654
Q ss_pred HHHHHhHHhcCCCc-------------CHHHHHHHHHHHhccCCHH-----------------------------HHHHH
Q 011587 341 HLFDNMKSKWGVEP-------------HIKHYSCIVDLLGRAGHLE-----------------------------EAYNF 378 (482)
Q Consensus 341 ~~~~~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~-----------------------------~A~~~ 378 (482)
..|-+ + +|-.| +..-...++..+....+.. .-..+
T Consensus 329 ~~y~~--k-fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 329 SYYFK--K-FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred HHHHH--H-hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 43322 1 23222 1112233344333222111 11111
Q ss_pred HHcC------C------CCCCH---------HHHHHHHHHHHhcCCHh---HHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 379 IMGI------P------IKPDA---------ILWRSLLSACNVHGDVA---LGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 379 ~~~~------~------~~p~~---------~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
+.+. | .-|+. .+.+.|+..|.+.+|.. +|+-+++......+ -|..+-.
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~--------hnf~~KL 477 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSP--------HNFQTKL 477 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC--------ccHHHHH
Confidence 1111 1 12222 24467778888887755 57778888888877 6777888
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhcCCccCC
Q 011587 435 ALSNIYASAERWPDVESVRKQMKVKRVETEP 465 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 465 (482)
.+++.|.-.|-+..|.++++.+.-++|..+.
T Consensus 478 lLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 478 LLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 9999999999999999999999877776654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-05 Score=69.50 Aligned_cols=184 Identities=13% Similarity=0.024 Sum_probs=127.7
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC-H---HHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN-V---LTW 288 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~ 288 (482)
.....+..+...+...|+++.|...++++.......+.....+..+..++...|++++|...++++.+ |+ . .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35667888889999999999999999999887621011224678889999999999999999999974 32 2 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHH
Q 011587 289 TAMATGMAIH--------GKGNEAIRLLDSMRDCGVKPNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359 (482)
Q Consensus 289 ~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 359 (482)
..+..++... |++++|.+.|+++.... |+. .....+... .. . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---H------HHHH-H--------HHH
Confidence 5556666654 77899999999998763 332 222222111 00 0 0000 1 112
Q ss_pred HHHHHHHhccCCHHHHHHHHHcC-CCC---C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 360 SCIVDLLGRAGHLEEAYNFIMGI-PIK---P-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..+...|.+.|++++|...+++. ... | ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788899999999888877 222 2 356788888999999999999998887776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00039 Score=67.97 Aligned_cols=337 Identities=10% Similarity=0.052 Sum_probs=210.4
Q ss_pred CCChhhHHHHhcC------CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh-C----
Q 011587 71 PPNLFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-G---- 139 (482)
Q Consensus 71 ~~~~~~~~~ll~~------~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~---- 139 (482)
.-|..+-..++.. |+.+.|.+-.+.++ +...|..+.+.|.+.+ + ++-|.-.+..|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~-R--LDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTR-R--LDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhc-c--ccHHHHhhhhhhhhhhHHHH
Confidence 4466666666665 99998888777665 5578889999999888 7 77776655554321 1
Q ss_pred ----CCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc
Q 011587 140 ----FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215 (482)
Q Consensus 140 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p 215 (482)
-.++ ..-....-.....|.+++|+.+|++..+ |..|-+.|.. .|.|++|+++-+.-. .+..
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs-----~g~w~eA~eiAE~~D----RiHL 857 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQS-----QGMWSEAFEIAETKD----RIHL 857 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHh-----cccHHHHHHHHhhcc----ceeh
Confidence 1222 2222333344577999999999988764 3344455666 889999988877532 2322
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHH----------HHhCC-------CCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYM----------EKTFY-------MPENDVFIGTALVDMYSKCGCLDNALLIFS 278 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~-------~p~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (482)
..||..-..-+...++.+.|.++|++. +.... .-..+...|.-....+-..|+.+.|+.+|.
T Consensus 858 -r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 858 -RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 345555556666677788777777652 22110 001244555555666667888888888887
Q ss_pred hccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-----CC
Q 011587 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG-----VE 353 (482)
Q Consensus 279 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~ 353 (482)
... -|-+++...|-.|+.++|-++-++ .| |......+...|-+.|++.+|...|.+...-.+ .+
T Consensus 937 ~A~-----D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE 1005 (1416)
T KOG3617|consen 937 SAK-----DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE 1005 (1416)
T ss_pred Hhh-----hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 466677777888999999887655 22 556666788999999999999999887765100 00
Q ss_pred cCHHHHHHHHHHH--hccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH--------HhcCCCccc
Q 011587 354 PHIKHYSCIVDLL--GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL--------LQLQPEVTF 423 (482)
Q Consensus 354 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~ 423 (482)
.+ .-..|.... ....+.-.|.++|++.|...+ ..+..|-+.|.+.+|+++.-+. +..+.+.
T Consensus 1006 nd--~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~-- 1076 (1416)
T KOG3617|consen 1006 ND--MKDRLANLALMSGGSDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA-- 1076 (1416)
T ss_pred cC--HHHHHHHHHhhcCchhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC--
Confidence 01 111222222 233345566777877753322 2334566777777776654322 1122211
Q ss_pred ccccCCchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
..|+...+--.+.++...++++|..++-..
T Consensus 1077 ---~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1077 ---GSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred ---CCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 257777777788888888888887766543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=77.35 Aligned_cols=212 Identities=10% Similarity=-0.018 Sum_probs=151.0
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcC
Q 011587 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHG 299 (482)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 299 (482)
.+...+.+.|-...|..++++. ..|...+..|+..|+..+|..+..+-.+ |+...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erl-----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL-----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH-----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 4445555666666666666543 3445567777777777777777665543 56666766666665555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (482)
-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- .+.-..+|-.+.-+..+.+++..|.+.|
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 567777776654322 1111222223467888888888877763 2334568888888888999999999998
Q ss_pred HcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 380 MGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 380 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
... ...| +...||.+-.+|.+.|+-.+|...+.++.+.+. .+...|...+-...+.|.+++|.+.+.++.
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--------~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--------QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--------CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 877 6677 567899999999999999999999999999887 677777777778889999999999988887
Q ss_pred hcCC
Q 011587 458 VKRV 461 (482)
Q Consensus 458 ~~~~ 461 (482)
+...
T Consensus 615 ~~~~ 618 (777)
T KOG1128|consen 615 DLRK 618 (777)
T ss_pred Hhhh
Confidence 5433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00019 Score=65.28 Aligned_cols=217 Identities=14% Similarity=0.075 Sum_probs=144.7
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCH-HHHHHHHHHhhccC-chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTD-TTMVCVLSVSSQLG-LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.++.++|+.++.++. .+.|+. .+|+.-..++...+ +++++...++++.+.. +.+..+|+.....+.+.|+.
T Consensus 50 ~e~serAL~lt~~aI----~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 50 DERSPRALDLTADVI----RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred CCCCHHHHHHHHHHH----HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHHHHHcCch
Confidence 677888888888876 344543 35555555555666 5788888888888877 66777777666666666653
Q ss_pred --HHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---Cc----HHH
Q 011587 271 --DNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA---GL----VEE 338 (482)
Q Consensus 271 --~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~----~~~ 338 (482)
+++..+++++.+ .|..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |. .++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 667888877764 46778888888888888899999999999887655 555665555544443 22 245
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc----CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcC----------
Q 011587 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA----GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHG---------- 402 (482)
Q Consensus 339 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---------- 402 (482)
......++.. ..+-|...|+.+...+... ++..+|.+++.+. ...| +......|+..|+...
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 6666666665 3355667777777777663 3345677777665 3333 5667777888777532
Q ss_pred --------CHhHHHHHHHHHHhcCC
Q 011587 403 --------DVALGEKVGKILLQLQP 419 (482)
Q Consensus 403 --------~~~~a~~~~~~~~~~~~ 419 (482)
..++|.++++.+.+.+|
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCc
Confidence 23567777776654444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.4e-05 Score=76.78 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=153.9
Q ss_pred cCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---C--
Q 011587 210 VSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---K-- 283 (482)
Q Consensus 210 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~-- 283 (482)
.....| +...+..|+..+...+++++|.++.+...+.. +.....|..+...+.+.++++++..+ .+.. .
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence 345556 45688899999999999999999999777766 55666666666688888888777666 3321 1
Q ss_pred -----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 284 -----------------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 284 -----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
+..++..+..+|-+.|+.+++..+|+++.+.. +-|+...|.+...|+.. +.++|.+++.+.
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 22466778888999999999999999999987 34788999999999999 999999999998
Q ss_pred HHhcCCCcCHHHHHHHHH---HHhc--cCCHHHHHHHHHcC----CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 011587 347 KSKWGVEPHIKHYSCIVD---LLGR--AGHLEEAYNFIMGI----PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417 (482)
Q Consensus 347 ~~~~~~~~~~~~~~~li~---~~~~--~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 417 (482)
... -+ +..-|+.+.. -++. ..+.+.-.++.+.+ +...-+.++-.+-..|...++++++..+++.+++.
T Consensus 176 V~~-~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 176 IYR-FI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHH-HH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 874 11 1112222222 1111 12233333333332 33334555666667788889999999999999999
Q ss_pred CCCcccccccCCchhHHHHHHHHH
Q 011587 418 QPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
++ .|.....-++..|.
T Consensus 253 ~~--------~n~~a~~~l~~~y~ 268 (906)
T PRK14720 253 DN--------KNNKAREELIRFYK 268 (906)
T ss_pred CC--------cchhhHHHHHHHHH
Confidence 99 78888888888877
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00092 Score=58.82 Aligned_cols=303 Identities=11% Similarity=0.037 Sum_probs=164.9
Q ss_pred HHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhH-HHHHHHHHHh
Q 011587 78 NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV-ATTLIHFYAS 156 (482)
Q Consensus 78 ~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 156 (482)
+.++..|.+.+|+.-|...++.+ |.+-.++.--...|...| . -..|..=+...++. +||-.. -..-...+.+
T Consensus 46 k~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmG-k--sk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMG-K--SKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhc-C--CccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34444477778887777777632 312222222234455555 4 55666666666655 565322 1222345677
Q ss_pred CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.|.++.|..=|+.+.+.++.- +....+..+ . ...+++ ......+..+...|+...|
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-----l-------~~~~e~-----------~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSN-GLVLEAQSK-----L-------ALIQEH-----------WVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCc-chhHHHHHH-----H-------HhHHHH-----------HHHHHHHHHHhcCCchhhH
Confidence 788888877777665432210 000111111 0 000111 1122233344456666666
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR---EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
......+++.. +-+...+..-..+|...|++..|+.=++... ..+..++-.+-..+...|+.+.++...++-.+
T Consensus 175 i~~i~~llEi~---~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ---PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHhcC---cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 66666666655 5566666666777777777777665554443 34555555555666666776666666666655
Q ss_pred CCCCCCHHH----HH---HHHH------HHhccCcHHHHHHHHHHhHHhcCCCcC-----HHHHHHHHHHHhccCCHHHH
Q 011587 314 CGVKPNAVT----FT---SLFA------ACCHAGLVEEGLHLFDNMKSKWGVEPH-----IKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 314 ~g~~p~~~~----~~---~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A 375 (482)
. .||... |. .+.. .....+++.++..-.+...+. .|. ...+..+-.++...+++-+|
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHH
Confidence 3 333321 11 1111 122345566666666665552 222 22334455566667777777
Q ss_pred HHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 376 YNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 376 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++...+. .+.|+ +.++.-=..+|.-...++.|+.-|+.+.+.++
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 7776666 55564 66666666777777777777777777777666
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-05 Score=73.37 Aligned_cols=252 Identities=11% Similarity=-0.001 Sum_probs=185.5
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|+..+|.-.|+... . .-+-+...|..|.......++-..|+..+.+.++.. +.+..+..+|.-.|...|.-..
T Consensus 298 nG~L~~A~LafEAAV--k-qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAV--K-QDPQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred cCCchHHHHHHHHHH--h-hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHHH
Confidence 888999999999876 2 223367789999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHHhccCCC-HHHHHHHH---------HHHHhcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 011587 273 ALLIFSRMREKN-VLTWTAMA---------TGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341 (482)
Q Consensus 273 A~~~~~~~~~~~-~~~~~~li---------~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 341 (482)
|...++...... ...|...- ..+.....+....++|-++ ...+..+|......|--.|--.|++++|.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998764211 00000000 1112222344555555555 455555777788888888888999999999
Q ss_pred HHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|+.+.. --+-|...||.|...++...+.++|+..|.+. .++|+- ...-.|.-+|...|.+++|.+.|=.++....
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999998 34556789999999999999999999999988 788863 3455577789999999999999988887655
Q ss_pred Ccccccc--cCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 420 EVTFVDV--ACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 420 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
......- .++...|..|=.++.-.++.|-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2000000 02345677777777777777655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-05 Score=63.04 Aligned_cols=121 Identities=9% Similarity=-0.021 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC
Q 011587 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI 384 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 384 (482)
.+|++..+. .|+. +......+...|++++|...|+.+.. --+.+...|..+..++...|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445554443 2332 44456667778888888888888776 33456777778888888888888888888877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 385 KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 385 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
.| +...+..+..++...|+.++|...|+.+++..| .+...+.....++
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p--------~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY--------ADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHH
Confidence 44 667777777788888888888888888888887 5666655544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-05 Score=75.79 Aligned_cols=214 Identities=13% Similarity=0.048 Sum_probs=170.9
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
.+...+.. .|-...|+.+|++.. .|.-++.+|+..|+..+|..+..+-.+ . +++...|..
T Consensus 403 ~laell~s-----lGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~le-k---~~d~~lyc~ 462 (777)
T KOG1128|consen 403 LLAELLLS-----LGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELE-K---DPDPRLYCL 462 (777)
T ss_pred HHHHHHHH-----cchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhc-C---CCcchhHHH
Confidence 45566667 888999999999875 677889999999999999999988887 3 668998999
Q ss_pred HHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 339 (482)
+.+.....--+++|.++++..... +-..+.....+.++++++.+.|+.-.+.+ +-...+|...-.+..+.+++..|
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 888887777788999988876544 22222222345789999999999876653 22556787788888899999999
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 011587 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 417 (482)
.+.|..... +-+-+...||.+-.+|.+.|+-.+|...+.+. .. .-+...|...+-...+.|.+++|.+.+.++...
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999987 66667889999999999999999999999988 21 335566777777888999999999999998875
Q ss_pred CC
Q 011587 418 QP 419 (482)
Q Consensus 418 ~~ 419 (482)
..
T Consensus 617 ~~ 618 (777)
T KOG1128|consen 617 RK 618 (777)
T ss_pred hh
Confidence 54
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.9e-05 Score=75.64 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN-AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
++..+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 5778888888889999999999999998886 444 45666778888899999999999999988 445567777888
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
..++...|++++|..+|++. .-.| +..++..+..++...|+.++|...|+++++... +-...|+-++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--------~~~~~~~~~~--- 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--------DGARKLTRRL--- 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--------cchHHHHHHH---
Confidence 88889999999999999988 2234 477888888888999999999999999988777 5555554433
Q ss_pred HhCCCchHHHHHHHHhHhcCCccCCcccEEEe
Q 011587 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQT 472 (482)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 472 (482)
++...-..+++.+.-.+......++.+.+
T Consensus 230 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (694)
T PRK15179 230 ---VDLNADLAALRRLGVEGDGRDVPVSILVL 258 (694)
T ss_pred ---HHHHHHHHHHHHcCcccccCCCceeeeeH
Confidence 23444556677766666655555555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0015 Score=60.95 Aligned_cols=388 Identities=9% Similarity=-0.015 Sum_probs=227.0
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~ 91 (482)
|+++.|...+.......- ++++.++-=...|++. |.+++|.+=-..-. .|+ ...|+..-.+ |++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASL---GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccCC-CccchhcchHHHHHHH---hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 888889888887776553 3677776667788888 89988886544433 232 2345544333 99999999
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCc-chhhhHHHHHHHHHHhC---CCCchhHHHHHHHHHHh----------C
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSL-STLWLGRQIHVHVTKRG---FMFNVLVATTLIHFYAS----------N 157 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~-~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~----------~ 157 (482)
-|.+=++.. |.|...+..+..++.... . ++.-.--.++..+.... .......|..++..+-+ .
T Consensus 92 ay~~GL~~d--~~n~~L~~gl~~a~~~~~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 92 AYSEGLEKD--PSNKQLKTGLAQAYLEDY-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHhhcC--CchHHHHHhHHHhhhHHH-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 999988854 657888888888773221 1 00000011111111100 00011122222222211 1
Q ss_pred CChhHHHHHhcc-----------C-----CCC------------C----------chhHHHHHHHHhcCCcccccchHHH
Q 011587 158 KDISSGKKVFDQ-----------M-----PMR------------S----------SATWNAMINGYCSQSKKAKDCAFNA 199 (482)
Q Consensus 158 g~~~~A~~~~~~-----------~-----~~~------------~----------~~~~~~li~~~~~~~~~~~~~~~~a 199 (482)
.++..|.-.+.. + ..| | ..-...+.++..+ ..++..|
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk-----kk~f~~a 243 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK-----KKDFETA 243 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH-----hhhHHHH
Confidence 111112111111 0 011 0 0124456666777 7888889
Q ss_pred HHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH-------HHHHHHcCCChHH
Q 011587 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA-------LVDMYSKCGCLDN 272 (482)
Q Consensus 200 ~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~-------li~~~~~~g~~~~ 272 (482)
++-+.... . +.-+..-++....++...|.+..+...-+...+.|. ....-|+. +..+|.+.++++.
T Consensus 244 ~q~y~~a~--e--l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr---e~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 244 IQHYAKAL--E--LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR---ELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHH--h--HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH---HHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 99888876 3 333444455666778888888888877777777663 22333333 3446667788999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 273 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
|+..|.+...+... -....+....+++....+...-.+ |.. .-...=...+.+.|++..|...|.+++++
T Consensus 317 ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-- 387 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-- 387 (539)
T ss_pred HHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--
Confidence 99999886542111 111223334455555544443332 222 11222245566788899999999888884
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 429 (482)
.+-|...|....-+|.+.|.+..|+.-.+.. .+.| ....|.-=..++....+++.|.+.|++.++.+| .+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp--------~~ 459 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP--------SN 459 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------hh
Confidence 3667788888888888888888887766655 3344 334444445555666788888888888888887 55
Q ss_pred chhHHHHHHHHHh
Q 011587 430 SEDFVALSNIYAS 442 (482)
Q Consensus 430 ~~~~~~l~~~~~~ 442 (482)
......+.++...
T Consensus 460 ~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 460 AEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-05 Score=63.91 Aligned_cols=107 Identities=8% Similarity=-0.076 Sum_probs=91.3
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
.++++..+. .|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~~---~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV---DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc---CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555542 344 4566788889999999999999988 5555 77888999999999999999999999999999
Q ss_pred CCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
| .+...+..+..++.+.|++++|...++...+..
T Consensus 89 p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 A--------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred C--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9 899999999999999999999999999987544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.8e-05 Score=63.40 Aligned_cols=157 Identities=13% Similarity=0.006 Sum_probs=108.9
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHhccCC-C--CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH
Q 011587 143 NVLVATTLIHFYASNKDISSGKKVFDQMP-M--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219 (482)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~ 219 (482)
|..+ ..+-..+.-.|+-+....+..... . .|....+..+....+ .|++..|+..+++. ...-++|..+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-----~g~~~~A~~~~rkA---~~l~p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-----NGNFGEAVSVLRKA---ARLAPTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHH-----hcchHHHHHHHHHH---hccCCCChhh
Confidence 4444 555566666777777666666543 2 244455557777777 88888888888877 4455667778
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMA 296 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 296 (482)
|+.+.-+|.+.|+.++|...|.+..+.. +.+....+.+.-.|.-.|+.+.|..++..... .|..+-..+.....
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELA---PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhc---cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 8888888888888888888888777776 45666677777777777788888777776652 35666666777777
Q ss_pred hcCChHHHHHHHHHH
Q 011587 297 IHGKGNEAIRLLDSM 311 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m 311 (482)
..|+++.|.++...-
T Consensus 214 ~~g~~~~A~~i~~~e 228 (257)
T COG5010 214 LQGDFREAEDIAVQE 228 (257)
T ss_pred hcCChHHHHhhcccc
Confidence 777777777766543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00028 Score=59.82 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=90.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc---
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR--- 368 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 368 (482)
...|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++|.+ --+..+.+.|..+|.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhc
Confidence 345667777777777766521 122222223334455677777777777766 1345566656655543
Q ss_pred -cCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 369 -AGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 369 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
.+...+|.-+|++| +..|+..+.+....++...|++++|+.++++++...+ .++.+...++..-...|.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--------~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA--------KDPETLANLIVLALHLGK 256 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHhCC
Confidence 34567777777777 3567777777777777777777777777777777777 566666666665555555
Q ss_pred chHH-HHHHHHhH
Q 011587 446 WPDV-ESVRKQMK 457 (482)
Q Consensus 446 ~~~a-~~~~~~m~ 457 (482)
-.++ .+.+.+++
T Consensus 257 d~~~~~r~l~QLk 269 (299)
T KOG3081|consen 257 DAEVTERNLSQLK 269 (299)
T ss_pred ChHHHHHHHHHHH
Confidence 4333 33444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00071 Score=57.47 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=121.0
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.++.+.+..... ..+......-...|++.|++++|++..+....-.....+ +..+.+..+++-|.+.+++|.+-.
T Consensus 93 ~~l~E~~a~~~~--~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 93 ASLYELVADSTD--GSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHHHhhcc--chhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc-
Confidence 344555554443 223333444456788999999999998884433333333 444667788899999999998753
Q ss_pred CCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHH
Q 011587 317 KPNAVTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAIL 390 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~ 390 (482)
+..|.+.|..++.+ .+.+..|.-+|++|.. ..+|+..+.+-...++...|++++|..++++. ....++.+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 56677767776654 4568889999999987 57888889888888889999999999999887 33346666
Q ss_pred HHHHHHHHHhcCCH-hHHHHHHHHHHhcCC
Q 011587 391 WRSLLSACNVHGDV-ALGEKVGKILLQLQP 419 (482)
Q Consensus 391 ~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 419 (482)
...++-+-...|.. +.-.+.+.+.....|
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 66666555555544 445567777766666
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00017 Score=72.34 Aligned_cols=146 Identities=7% Similarity=-0.033 Sum_probs=124.0
Q ss_pred CCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHH
Q 011587 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTW 288 (482)
Q Consensus 212 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 288 (482)
....+...+..|.....+.|++++|+..++...+.. |.+......+...+.+.+++++|...+++... | +....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHH
Confidence 344568889999999999999999999999999988 77888899999999999999999999999985 3 55677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
..+..++.+.|++++|..+|++....+ +-+..++..+..++-..|+.++|...|++..+ ...+....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHHH
Confidence 888889999999999999999999843 23577888899999999999999999999998 4455556665544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00017 Score=71.76 Aligned_cols=343 Identities=10% Similarity=-0.002 Sum_probs=174.6
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
.+...|+..|-+..+.. |.-...|..+-..|...- + ...|.+.|+...+.+ +-+........+.|++..+++.|
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~-D--m~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSD-D--MKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHH-H--HHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 45555555555555533 323446666666666666 6 777777777777654 34566677777777777777777
Q ss_pred HHHhccCCCCC-----chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHH
Q 011587 164 KKVFDQMPMRS-----SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGA 237 (482)
Q Consensus 164 ~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 237 (482)
..+.-...+.+ ...|-...-.|.+ .++...|+.-|+... .+.| |...|..+..+|...|++..|.
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLe-----a~n~h~aV~~fQsAL----R~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLE-----AHNLHGAVCEFQSAL----RTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccC-----ccchhhHHHHHHHHh----cCCchhHHHHHHHHHHHHhcCceehHH
Confidence 77732222111 1122222233444 555666665555543 2333 4445666666666666666666
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC----------CHHHHHHHHHHHHhcCChHHHHHH
Q 011587 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK----------NVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
++|.++.... |.+...-.-..-.-+..|.+.+|...+..+... -..++-.+...+...|-..++.++
T Consensus 617 KvF~kAs~Lr---P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~ 693 (1238)
T KOG1127|consen 617 KVFTKASLLR---PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF 693 (1238)
T ss_pred HhhhhhHhcC---cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 6666555444 333333333333445555555555555544310 011111111111111111111111
Q ss_pred HHH-------------------------------------------------HHhCCCCCC-------------------
Q 011587 308 LDS-------------------------------------------------MRDCGVKPN------------------- 319 (482)
Q Consensus 308 ~~~-------------------------------------------------m~~~g~~p~------------------- 319 (482)
+++ ....+..|+
T Consensus 694 ~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~ 773 (1238)
T KOG1127|consen 694 FEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI 773 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh
Confidence 111 111111111
Q ss_pred -HHHHHHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCH
Q 011587 320 -AVTFTSLFAACCH--------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDA 388 (482)
Q Consensus 320 -~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~ 388 (482)
..+|..+...|.+ ..+...|...+....+ -...+..+|+.|.-. ...|.+.-|...|-+. ..+...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 1111111111111 1112244444444443 112233444444333 3334555554444333 222356
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
.+|..+...+.+..|++.|...|.......| .|...|..........|+.-++..+|..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP--------~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDP--------LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCc--------hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 6777777778888899999999999999999 7888887777777777877777777654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00085 Score=62.01 Aligned_cols=123 Identities=17% Similarity=0.174 Sum_probs=82.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 399 (482)
-|..-+.. ...|+.++|+..++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ....-.+..++.
T Consensus 309 ~YG~A~~~-~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQT-YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHH-HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 34433433 355777777777777776 44555556666667777777777777777777 45565 445556667777
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
+.|++.+|...+++.....| .|+..|..|..+|...|+..++....-+
T Consensus 386 ~~g~~~eai~~L~~~~~~~p--------~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDP--------EDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred hcCChHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 77777777777777777777 6777777777777777766665554433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=5e-05 Score=70.42 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=97.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
....|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666666778899999999998885 244 4445777887888888888888877 3334 6666776777788
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.++++.|..+.+++.+..| .+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP--------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSP--------SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999998 788899999999999999999998888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0044 Score=60.16 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=84.7
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCc--hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhh
Q 011587 151 IHFYASNKDISSGKKVFDQMPMRSS--ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228 (482)
Q Consensus 151 ~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~ 228 (482)
+.+......|.+|+.+++.+....+ --|..+...|.. .|+++.|.++|.+.. .++-.+..|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan-----~~dfe~ae~lf~e~~-----------~~~dai~my~ 802 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN-----KGDFEIAEELFTEAD-----------LFKDAIDMYG 802 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc-----chhHHHHHHHHHhcc-----------hhHHHHHHHh
Confidence 3444455566666666665553322 234445555555 666666666665432 2334455566
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 308 (482)
+.|+|+.|.++-.+.. |. +.....|-+-..-.-+.|++.+|+++|-.+.+|+. -|..|-+.|..+..+++.
T Consensus 803 k~~kw~da~kla~e~~--~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred ccccHHHHHHHHHHhc--Cc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHH
Confidence 6666666655543321 21 33444555555555566666666666666665553 244555666666665555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 309 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
.+-.-.. -..|...+..-+-..|+...|+.-|-
T Consensus 874 ~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 874 EKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHhChhh---hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 4422111 12233344444445555555554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.7e-05 Score=69.60 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
+.....+|+..+...++++.|+.+|+++.+.+......++..+...++-.+|.+++++..+.. +-+......-...+.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 444556677778888999999999999998777777778888888899999999999988763 3356666666777889
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 386 (482)
.++.+.|..+.+++.+ -.+-+..+|..|..+|...|+++.|+..+..++..+
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999998 344556699999999999999999999999885443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=49.16 Aligned_cols=33 Identities=27% Similarity=0.635 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 319 (482)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.5e-06 Score=47.83 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 318 (482)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0014 Score=55.30 Aligned_cols=163 Identities=16% Similarity=0.163 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV-LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
..+|..++-+....|+.+.|...++.+.. |+. .+-..-...+-..|++++|+++++.+.+.+ +.|..++..=+...
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 44455566666677777777777777653 211 111111122345688888888888888776 33666776666666
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcC---CHh
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHG---DVA 405 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~ 405 (482)
-..|+.-+|++-+....+ .+..|...|..+.+.|...|++++|.-.++++ -+.| +...+..+...+.-.| +.+
T Consensus 131 ka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 666777788888888887 56778888988999999999999998888888 4455 4445555555544333 566
Q ss_pred HHHHHHHHHHhcCC
Q 011587 406 LGEKVGKILLQLQP 419 (482)
Q Consensus 406 ~a~~~~~~~~~~~~ 419 (482)
.+.+.|.+.++..+
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 78888888888777
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.11 E-value=6e-05 Score=59.66 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
.....+...+...|++++|...++.+.. ..+.+...+..+...+...|++++|...++.. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444555666667777777777777666 22445666666667777777777777766655 3333 455555566666
Q ss_pred HhcCCHhHHHHHHHHHHhcCC
Q 011587 399 NVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|++++|...++...+..|
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhcc
Confidence 677777777777777777666
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.014 Score=59.00 Aligned_cols=390 Identities=9% Similarity=-0.065 Sum_probs=224.4
Q ss_pred CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCC---hhhHHHHhcC------CCCccHHHHHHHHHHCCCCCCChhh
Q 011587 38 SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN---LFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFT 108 (482)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~------~~~~~a~~~~~~m~~~~~~p~~~~~ 108 (482)
.+..........|+.. .+++.|..+.-...+.+ ...+|-.-.+ ++..+|+.-|+...+.. |.|...
T Consensus 524 tdaeaaaa~adtyae~---~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~ 598 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEE---STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNL 598 (1238)
T ss_pred hhhhhHHHHHHHhhcc---ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHH
Confidence 4455668888899998 99999988743332221 1223333333 88999999999998854 668899
Q ss_pred HHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhHHHHHhccCCCC----------Cchh
Q 011587 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMR----------SSAT 177 (482)
Q Consensus 109 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~ 177 (482)
|..+..+|.++| . ...|.++|.+.... .|+ ...--...-+-+..|.+.+|++.+..+... -..+
T Consensus 599 W~gLGeAY~~sG-r--y~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 599 WLGLGEAYPESG-R--YSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHHHHhcC-c--eehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999 8 99999999988765 343 222222333456779999999888766421 1112
Q ss_pred HHHHHHHHhcCCc--ccccchHHHHHHHHHhhhccCC--------------------C---CcCHHHHHHHHHHhhccCc
Q 011587 178 WNAMINGYCSQSK--KAKDCAFNALVLFRDMLVDVSG--------------------V---KPTDTTMVCVLSVSSQLGL 232 (482)
Q Consensus 178 ~~~li~~~~~~~~--~~~~~~~~a~~~~~~m~~~~~~--------------------~---~p~~~~~~~l~~~~~~~~~ 232 (482)
+-.+...+.-.|- ....-++++++.|.-.. ... + .|+.....++..-.-..+.
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l--~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSL--IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 2222222222000 00111222222222221 111 1 1222222222221212221
Q ss_pred h---H---HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc-------CC-ChHHHHHHHHhccC---CCHHHHHHHHHHH
Q 011587 233 L---E---FGACVHGYMEKTFYMPENDVFIGTALVDMYSK-------CG-CLDNALLIFSRMRE---KNVLTWTAMATGM 295 (482)
Q Consensus 233 ~---~---~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~-------~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~ 295 (482)
. + .+.+.+-.-+ .. ..+...|..|+..|.+ .+ +...|+..+.+..+ .+...||.|.-.
T Consensus 752 l~~~d~l~Lg~~c~~~hl--sl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl- 826 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHL--SL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL- 826 (1238)
T ss_pred CcchhHHHHHHHHhhHHH--HH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-
Confidence 1 1 0001110001 11 1123344444444333 11 23466777766653 566778877665
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 375 (482)
...|++.-+...|-+-.... +.+..+|..+-..+.+..+++.|...|..... -.+.+...|--........|+.-++
T Consensus 827 sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~ 903 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIER 903 (1238)
T ss_pred hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHH
Confidence 66678888888887766653 33667787788888899999999999999887 4455666665555445567888888
Q ss_pred HHHHHcC-------CCCCCHHHHHHHHHHHHhcCCHhHH----------HHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 376 YNFIMGI-------PIKPDAILWRSLLSACNVHGDVALG----------EKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 376 ~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
..+|..- +-.|+..-|-....-....|+.++- .-.+++.....| .....|.+...
T Consensus 904 ~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p--------~~~fAy~~~gs 975 (1238)
T KOG1127|consen 904 LILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP--------QLCFAYAANGS 975 (1238)
T ss_pred HHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc--------chhHHHHHHHh
Confidence 8888762 3345555444444444455555443 334444445555 56778888887
Q ss_pred HHHhCCCchHHHHHHHH
Q 011587 439 IYASAERWPDVESVRKQ 455 (482)
Q Consensus 439 ~~~~~g~~~~a~~~~~~ 455 (482)
...+.+.+.+|..+..+
T Consensus 976 tlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 976 TLEHLEEYRAALELATR 992 (1238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788877777665444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0002 Score=56.63 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
+......+...+...|++++|.+.|+.....+ +.+...+..+...+.+.|++++|..+++...+ ..+.+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHH
Confidence 44556677788899999999999999998865 33777888899999999999999999999887 3466778888889
Q ss_pred HHHhccCCHHHHHHHHHcC-CCCCCHHHHHHH
Q 011587 364 DLLGRAGHLEEAYNFIMGI-PIKPDAILWRSL 394 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 394 (482)
..|...|++++|...|++. ...|+...+..+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 9999999999999999887 555655554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0025 Score=59.02 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=76.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 372 (482)
.+...|++++|+..++.+...- +-|..........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 3445677777777777766652 224444445555677777777777777777763 333 55556667777777777
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 373 EEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 373 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.+|..+++.. ..+-|+..|..|..+|...|+..++.....+...
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 7777777766 3334677777777777777776666655554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0067 Score=51.36 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=140.1
Q ss_pred ccchHHHHHHHHHhhhc-cCC-CCcCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 193 KDCAFNALVLFRDMLVD-VSG-VKPTDT-TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~-~~~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
..+.++.++++.++... ..| ..|+.. .|..++-+....|+.+.|...++++...- |.+..+-..-.-.+-..|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhc
Confidence 66788888888877621 234 566666 45677778888999999999999988765 4454444444445667899
Q ss_pred hHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 270 LDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 270 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
+++|+++|+.+.+. |.+++-.-+...-..|+.-+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999863 4566666666667778888898888887776 5669999999999999999999999999999
Q ss_pred HHhcCCCcCHHHHHHHHHHHhccC---CHHHHHHHHHcC-CCCC
Q 011587 347 KSKWGVEPHIKHYSCIVDLLGRAG---HLEEAYNFIMGI-PIKP 386 (482)
Q Consensus 347 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p 386 (482)
.- --|.+...+..+.+.+--.| +.+.|.++|.+. .+.|
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 86 33455666667777665544 456678888776 4445
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=45.35 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
.+|+.++.+|.+.|+++.|.+++++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999876
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00084 Score=53.73 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH--HHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI--KHYSCI 362 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 362 (482)
.|..++..+ ..++...+...++.+......- .......+...+...|++++|...|+.+... ...++. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 455555555 3677788877788877753221 1223334556677788888888888888874 322221 233445
Q ss_pred HHHHhccCCHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGIPI-KPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
...+...|++++|+..++...- ......+......+...|+.++|...|+.+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777788888888888877521 224455566677788888888888888764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00048 Score=55.13 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=47.8
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH----HHHHHHHHHHHhcCC
Q 011587 230 LGLLEFGACVHGYMEKTFYMPEND---VFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV----LTWTAMATGMAIHGK 300 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~ 300 (482)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.. ++. ...-.+...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 444444444444444443 222 22223334445555555555555554442 111 122233444455555
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
+++|+..++..... ......+......+.+.|+.++|...|+.
T Consensus 101 ~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555442221 11223333444455555555555555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.6e-05 Score=45.74 Aligned_cols=34 Identities=38% Similarity=0.769 Sum_probs=31.8
Q ss_pred hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC
Q 011587 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216 (482)
Q Consensus 176 ~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 216 (482)
.+||++|.+|++ .|++++|.++|++|. ..|++||
T Consensus 1 ~~~n~li~~~~~-----~~~~~~a~~~~~~M~--~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCK-----AGRVEEALELFKEML--ERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHH-----CCCHHHHHHHHHHHH--HcCCCCC
Confidence 379999999999 999999999999999 8899997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0033 Score=60.02 Aligned_cols=220 Identities=16% Similarity=0.068 Sum_probs=117.4
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 184 (482)
+.-.++..=++|.+-+ +-++-+..--++++.++|-.|+... +...++-.|++.+|-++|.+
T Consensus 597 eAL~f~~ARkAY~rVR-dl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~--------------- 657 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVR-DLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR--------------- 657 (1081)
T ss_pred hhhhhHHHHHHHHHHh-ccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---------------
Confidence 3345666667777777 6334444445566777787777654 56778888999999999876
Q ss_pred HhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHh--CCCCCCchhHHHHHHH
Q 011587 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT--FYMPENDVFIGTALVD 262 (482)
Q Consensus 185 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~~~li~ 262 (482)
.|...+|+++|..|+ ..-...-+...|..++-..+.++-.+. +.. +| .+...
T Consensus 658 --------~G~enRAlEmyTDlR------------MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-eP-----kaAAE 711 (1081)
T KOG1538|consen 658 --------SGHENRALEMYTDLR------------MFDYAQEFLGSGDPKEKKMLIRKRADWARNIK-EP-----KAAAE 711 (1081)
T ss_pred --------cCchhhHHHHHHHHH------------HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC-Cc-----HHHHH
Confidence 666666777777765 111223334444444433333322111 100 11 23344
Q ss_pred HHHcCCChHHHHHH-------------HHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 263 MYSKCGCLDNALLI-------------FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 263 ~~~~~g~~~~A~~~-------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
.+...|+.++|..+ -+++...+..+...+..-+.+...+.-|.++|.+|-+. ..+++.
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVql 782 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQL 782 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhh
Confidence 45555555555443 33333333444444444444555566666666665432 135555
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCC
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 383 (482)
+...+++++|..+-++..+ +.|+ .|--..+-++...++++|.+.|.+.|
T Consensus 783 Hve~~~W~eAFalAe~hPe---~~~d--Vy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPE---FKDD--VYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred eeecccchHhHhhhhhCcc---cccc--ccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 6666666666666555543 2333 22333444555566666655555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=2e-05 Score=43.94 Aligned_cols=30 Identities=30% Similarity=0.624 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566677777777777777777777766653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00041 Score=53.33 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGV-EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLL 395 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 395 (482)
++..+...+.+.|++++|...|..+.+.+.- ......+..+...+.+.|++++|.+.|+.. ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4445666666777777777777777763111 111345556777777778888887777766 22232 34566666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 396 SACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.++.+.|+.++|...++++++..|
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777778888888888888888777
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00045 Score=50.47 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCcCHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPNAVTFTSLFAACCHAG--------LVEEGLHLFDNMKSKWGVEPHIK 357 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 357 (482)
+....|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++.....+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344456666677999999999999999999 899999999999887643 355678899999984 8999999
Q ss_pred HHHHHHHHHhc
Q 011587 358 HYSCIVDLLGR 368 (482)
Q Consensus 358 ~~~~li~~~~~ 368 (482)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00029 Score=51.33 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (482)
+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.+.++...+..+ .+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--------DNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------cchhHHHHH
Confidence 344555566667777777776665 3333 334555566666667777777777777777666 455666677
Q ss_pred HHHHHhCCCchHHHHHHHHhHh
Q 011587 437 SNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
...+...|++++|...++...+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 7777777777777777666553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00041 Score=54.69 Aligned_cols=92 Identities=10% Similarity=-0.034 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHH
Q 011587 358 HYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (482)
..-.+...+...|++++|.++|+-. .+.| +..-|-.|..++...|++++|...|..+...+| .++..+..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--------ddp~~~~~ 108 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--------DAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCchHHHH
Confidence 3344445556667777777777766 3344 445556666666667777777777777777777 67777777
Q ss_pred HHHHHHhCCCchHHHHHHHHhH
Q 011587 436 LSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+..++...|+.+.|.+.|+...
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777776554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=59.11 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
.+|..++...-+.+..+.|..+|.+..+.+ +........+++..+ ..++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998653 233444444444433 347777899999999984 5667788999999
Q ss_pred HHhccCCHHHHHHHHHcC-CCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 365 LLGRAGHLEEAYNFIMGI-PIKPDA----ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+.++.+++.+..+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988 333433 5899999999999999999999999998876
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.001 Score=62.20 Aligned_cols=123 Identities=9% Similarity=-0.010 Sum_probs=94.6
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC---CCCCCHH
Q 011587 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW-GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PIKPDAI 389 (482)
Q Consensus 314 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 389 (482)
.+.+.+...+..++..+....+++.+..++.+..... ....-..|..++|+.|.+.|..+++++++..= |+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445577788888888888888888888888887631 11122335568899999999999999998764 8889999
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
++|.||..+.+.|++..|.+++.+|...+. ..+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~-------~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEE-------FDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhc-------cCCchHHHHHHHHHHHh
Confidence 999999999999999999998888877665 35667777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.1e-05 Score=42.23 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00072 Score=51.92 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCch
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 431 (482)
.++..++..+.+.|++++|.+.|..+ ...|+ ...+..+..++.+.|+++.|...++.+....|+. .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~ 77 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-----PKAPD 77 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-----CcccH
Confidence 35677888899999999999999888 33343 3466678889999999999999999999987721 02356
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 432 DFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.+..+..++.+.|++++|...++++.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 788889999999999999999999987643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.085 Score=52.92 Aligned_cols=404 Identities=12% Similarity=0.015 Sum_probs=220.6
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHH--HhcCCCCCChHHHHHHhhcCCC---CChhhHHHHhcC----CCCccH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLY--CTKKASPQSTKIVHFVFTHFDP---PNLFLFNTLIRC----TPPQDS 89 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~----~~~~~a 89 (482)
+.+..|.+-.+.+.+.. |+..+. .++.+ ..+. |..++|..+++.... .|..+...+-.. +..++|
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~~~a-~vLkaLsl~r~---gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNALYA-KVLKALSLFRL---GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCcHHH-HHHHHHHHHHh---cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34455555555555443 333322 23333 3456 899999999988762 244454444444 999999
Q ss_pred HHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-Ch--------
Q 011587 90 VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK-DI-------- 160 (482)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-------- 160 (482)
..+|++..+.. | +..-...+..+|.|.+ + +.+-.+.=-++-+. ++-++..+=++++.+...- ..
T Consensus 97 ~~~Ye~~~~~~--P-~eell~~lFmayvR~~-~--yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 97 VHLYERANQKY--P-SEELLYHLFMAYVREK-S--YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHHhhC--C-cHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999854 7 6777777778888877 6 66555544444443 3445555555666655432 12
Q ss_pred -hHHHHHhccCCCCC--chhHH-HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 161 -SSGKKVFDQMPMRS--SATWN-AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 161 -~~A~~~~~~~~~~~--~~~~~-~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.-|.+.++.+.+.+ ..+-. ..+....-.. .+.+++|++++..-.. +.-...+...-+.-+..+...+++.+.
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~---~~k~~eal~~l~~~la-~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILEL---QGKYQEALEFLAITLA-EKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHh---cccHHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHhcChHHH
Confidence 22444445444333 11211 2222222222 6789999999954430 222333555556778888999999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHH----------------HcCCChHHHHHHHHhccCC-CHHHHHHHHHHHH---
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMY----------------SKCGCLDNALLIFSRMREK-NVLTWTAMATGMA--- 296 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~----------------~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~--- 296 (482)
.++-.++...|. .| |...++.+ ...+..+...+..++.... .-.+|-+-+.++.
T Consensus 246 ~~l~~~Ll~k~~---Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~ 319 (932)
T KOG2053|consen 246 FELSSRLLEKGN---DD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYK 319 (932)
T ss_pred HHHHHHHHHhCC---cc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhc
Confidence 999999999984 34 33333322 1222333443333333321 2234444444443
Q ss_pred hcCChHHHHHHHHHHHhCCCCC----CHHHHH---------HHHHHHhcc------------------------C-----
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKP----NAVTFT---------SLFAACCHA------------------------G----- 334 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p----~~~~~~---------~ll~~~~~~------------------------~----- 334 (482)
.-|+.+++...|-+ +.|-.| |...|. .++..+... |
T Consensus 320 ~~gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l 397 (932)
T KOG2053|consen 320 LIGDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKL 397 (932)
T ss_pred ccCChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccC
Confidence 44777776654433 233333 333331 122222211 1
Q ss_pred cHHHHHHHHHHhHHh--cC------CCcCH---------HHHHHHHHHHhccCCHH---HHHHHHHcC-CCCC-CHHHHH
Q 011587 335 LVEEGLHLFDNMKSK--WG------VEPHI---------KHYSCIVDLLGRAGHLE---EAYNFIMGI-PIKP-DAILWR 392 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~--~~------~~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~~~~~ 392 (482)
.-+....++.+.... .| +-|+. -+.+.|++.|.+.++.. +|+-+++.. ...| |..+--
T Consensus 398 ~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KL 477 (932)
T KOG2053|consen 398 PADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKL 477 (932)
T ss_pred ChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHH
Confidence 011222222222111 12 12232 23467788888888766 455555554 3444 555566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
.+|+.|+-.|-+..|.++|..+--++.. .|..-| .+..-+.-.|++..+...+..
T Consensus 478 lLiriY~~lGa~p~a~~~y~tLdIK~IQ-------~DTlgh-~~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 478 LLIRIYSYLGAFPDAYELYKTLDIKNIQ-------TDTLGH-LIFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHHHHHHhcCChhHHHHHHhcchHHhh-------hccchH-HHHHHHHhcccchhHHHHHHH
Confidence 7889999999999999999987665551 222222 333445556677666665544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.8e-05 Score=53.26 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA-ILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|.+++++....|.. ...-.+..++.+.|++++|.+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4555555555555553111112333333455555555555555555543222222 222233444555555555555554
Q ss_pred H
Q 011587 413 I 413 (482)
Q Consensus 413 ~ 413 (482)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00077 Score=48.96 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=41.8
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGD 403 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 403 (482)
+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.+.++.. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 333444445555555555544441 1222234444444445555555555555443 2122 22344445555555555
Q ss_pred HhHHHHHHHHHHhcC
Q 011587 404 VALGEKVGKILLQLQ 418 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~ 418 (482)
.+.|...+....+..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 555555555554443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.001 Score=55.07 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=76.5
Q ss_pred HHHHHHhc--cCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc------------
Q 011587 273 ALLIFSRM--REKNVLTWTAMATGMAIH-----GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA------------ 333 (482)
Q Consensus 273 A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------ 333 (482)
-...|+.. ...+..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.|+..+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34455555 356777777777777644 67788888889999999999999999999988652
Q ss_pred ----CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 334 ----GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 334 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
.+.+-|.+++++|.. +|+-||..++..+++.+++.+..
T Consensus 113 ~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 245678888888888 58888988888888888877653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.03 Score=50.55 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcC-CChHHHHHHHHhccC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCH
Q 011587 256 IGTALVDMYSKC-GCLDNALLIFSRMRE-----K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-----PNA 320 (482)
Q Consensus 256 ~~~~li~~~~~~-g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~ 320 (482)
.+..+...|-.. |+++.|.+.|++..+ . -..++..+...+.+.|++++|.++|++....-.. .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344555566666 788888888877653 1 1245667778899999999999999988764322 222
Q ss_pred H-HHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCcC--HHHHHHHHHHHhc--cCCHHHHHHHHHcCCCCCCHHHHHHH
Q 011587 321 V-TFTSLFAACCHAGLVEEGLHLFDNMKSK-WGVEPH--IKHYSCIVDLLGR--AGHLEEAYNFIMGIPIKPDAILWRSL 394 (482)
Q Consensus 321 ~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l 394 (482)
. .|...+-++...||...|.+.+++.... .++..+ ......|+.++-. ...+++++.-|+.+. +.|..--..|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 2 2233334555678999999999988753 133333 4566777888765 346778888888874 3444433333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00062 Score=49.74 Aligned_cols=72 Identities=11% Similarity=-0.092 Sum_probs=62.1
Q ss_pred CCCccHHHHHHHHHHCCC-CCCChhhHHHHHHHhhhccCc-----chhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 011587 84 TPPQDSVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSL-----STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~-~p~~~~~~~~ll~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (482)
+++.....+|+.+++.|+ .| +..+|+.++.+.++..-+ +++-..+.+++.|+..+++|+..+|+.++..+.+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lP-sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLP-SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 889999999999999999 77 999999999999887621 1355677899999999999999999999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00034 Score=49.90 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=61.3
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 011587 298 HGKGNEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376 (482)
Q Consensus 298 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (482)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..+++. .+. +. .+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 68999999999999887542 2455555689999999999999999998 321 21 23345556688999999999999
Q ss_pred HHHHc
Q 011587 377 NFIMG 381 (482)
Q Consensus 377 ~~~~~ 381 (482)
+.|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=61.54 Aligned_cols=116 Identities=12% Similarity=0.005 Sum_probs=51.8
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTA 290 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 290 (482)
.+...+..+++.+....+++.+..++.........-..-..+..++|..|.+.|..+.+..+++.=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555555555544433110011223333455555555544444444443332 44444455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
||..+.+.|++..|.++...|...+...+..|+..-+.+|
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 5554444455544444444444444333444443333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00085 Score=55.54 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=71.5
Q ss_pred HHhccC--CCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhcc------------
Q 011587 165 KVFDQM--PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL------------ 230 (482)
Q Consensus 165 ~~~~~~--~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~------------ 230 (482)
..|+.. ...+..+|..++..|.+......|..+-....++.|. +-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~--efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD--EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH--HcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 344444 3456666666776666544333677777777777777 778888888888888777542
Q ss_pred ----CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 231 ----GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 231 ----~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
.+-+-+.+++++|...|+.| |..++..+++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~P--d~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMP--DKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHhccccH
Confidence 23467888899999999855 88888888888887664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0023 Score=59.63 Aligned_cols=86 Identities=13% Similarity=0.026 Sum_probs=40.7
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
..|++++|...|+++.+ .-+-+...|..+..+|...|++++|+..+++. .+.| +...|..+..+|...|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455555555555544 12223444444444555555555555555444 2233 33444444445555555555555
Q ss_pred HHHHHHhcCC
Q 011587 410 VGKILLQLQP 419 (482)
Q Consensus 410 ~~~~~~~~~~ 419 (482)
.|+++++.+|
T Consensus 92 ~~~~al~l~P 101 (356)
T PLN03088 92 ALEKGASLAP 101 (356)
T ss_pred HHHHHHHhCC
Confidence 5555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0012 Score=61.53 Aligned_cols=90 Identities=10% Similarity=0.096 Sum_probs=79.1
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
...+...|++++|++.|++. ...| +...|..+..+|...|++++|...++++++..| .+...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--------~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP--------SLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHH
Confidence 45667889999999999988 4455 677888888999999999999999999999999 7889999999999
Q ss_pred HhCCCchHHHHHHHHhHhcC
Q 011587 441 ASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~~ 460 (482)
...|++++|...+++..+.+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999998876443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0032 Score=56.59 Aligned_cols=142 Identities=13% Similarity=0.015 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHH-HHcCCChHHHHHHHHhccC---CCHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM-YSKCGCLDNALLIFSRMRE---KNVLTWTAMAT 293 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 293 (482)
.+|..+++..-+.+..+.|..+|.++++.+ ..+..+|...... |...++.+.|..+|+...+ .+...|..-+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 467888888888888999999999998654 4456666666665 3335677779999998875 57778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNA---VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.+...|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+. -|+......+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHHHh
Confidence 889999999999999998876 33322 47888888888899999999999998883 33333444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0005 Score=46.88 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC-CchHHHHHHHHhHhc
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE-RWPDVESVRKQMKVK 459 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 459 (482)
+..+|..+...+...|++++|+..|+++++.+| .+...|..+..++.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 466788888999999999999999999999999 78899999999999999 799999999887643
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.015 Score=46.03 Aligned_cols=94 Identities=7% Similarity=-0.054 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 331 (482)
.....+...+...|++++|.++|+.+.. | +..-|-.|..++-..|++.+|+..|.......+ -++..+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3344555556666777777777766653 2 444556666666666777777777776666553 35566666666677
Q ss_pred ccCcHHHHHHHHHHhHHh
Q 011587 332 HAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~ 349 (482)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766664
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00045 Score=46.41 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+...+...|++++|...|+++++..| .+...+..+..++.+.|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP--------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST--------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999 789999999999999999999999999987543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0026 Score=52.59 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=36.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|...++++++..+ .+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~ 109 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------KQPSAL 109 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHH
Confidence 344444444445555554444443 11111 23444445555555555555555555555554 344444
Q ss_pred HHHHHHHHhCCC
Q 011587 434 VALSNIYASAER 445 (482)
Q Consensus 434 ~~l~~~~~~~g~ 445 (482)
..+..++...|+
T Consensus 110 ~~lg~~~~~~g~ 121 (172)
T PRK02603 110 NNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHcCC
Confidence 444555544443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.094 Score=47.57 Aligned_cols=286 Identities=16% Similarity=0.107 Sum_probs=185.1
Q ss_pred HHHHHHHHHHh--CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH----
Q 011587 146 VATTLIHFYAS--NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT---- 219 (482)
Q Consensus 146 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~---- 219 (482)
.|.+|-.++.. .||-..|.++-.+-.+-=..--..||+.+..+.....|+++.|.+-|+.|. -|+.|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-------~dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-------DDPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-------cChHHHHHh
Confidence 46666666544 466667766655543322233445666555443344799999999999996 23333
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHH--HHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLT--WTAMA 292 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~--~~~li 292 (482)
+..|.-...+.|..+.|..+-+..-..- +.-...+.+.+...|..|+++.|+++.+.-.+ +++.- --.|+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLL 233 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLL 233 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Confidence 3344444467888888888887776655 44566778899999999999999999986553 44321 11222
Q ss_pred HHH---HhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc
Q 011587 293 TGM---AIHGKGNEAIRLLDSMRDCGVKPNAVT-FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368 (482)
Q Consensus 293 ~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (482)
.+- .-..+...|...-.+..+ ..|+..- -..-..++.+.|+..++-.+++.+-+. .|.+..+...+ +.+
T Consensus 234 tAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar 306 (531)
T COG3898 234 TAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RAR 306 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--Hhc
Confidence 211 112345555554444433 3555432 233456788999999999999999874 56666554433 446
Q ss_pred cCCHHHH----HHHHHcCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh-
Q 011587 369 AGHLEEA----YNFIMGIPIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS- 442 (482)
Q Consensus 369 ~g~~~~A----~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 442 (482)
.|+.... .+-++.| +| +....-.+..+....|++..|..-.+...+..| ....|..|.+.-..
T Consensus 307 ~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p---------res~~lLlAdIeeAe 375 (531)
T COG3898 307 SGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP---------RESAYLLLADIEEAE 375 (531)
T ss_pred CCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc---------hhhHHHHHHHHHhhc
Confidence 6653322 1223333 44 566677778888889999999988887777665 67888888887665
Q ss_pred CCCchHHHHHHHHhHhc
Q 011587 443 AERWPDVESVRKQMKVK 459 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~~~ 459 (482)
.|+-.++...+-+-.+.
T Consensus 376 tGDqg~vR~wlAqav~A 392 (531)
T COG3898 376 TGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCchHHHHHHHHHHhcC
Confidence 49999999998877643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0024 Score=52.66 Aligned_cols=111 Identities=11% Similarity=-0.033 Sum_probs=78.0
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
.+...+..+.+..+..-....|..+...+...|++++|+..|++. .+.|+ ..++..+...+...|++++|...++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444444322233334556777778888889999999888877 33332 3478888888999999999999999
Q ss_pred HHHhcCCCcccccccCCchhHHHHHHHHH-------hCCCchHHHHHHHHh
Q 011587 413 ILLQLQPEVTFVDVACTSEDFVALSNIYA-------SAERWPDVESVRKQM 456 (482)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~m 456 (482)
++.+..+ ....++..+...+. +.|++++|...+++-
T Consensus 97 ~Al~~~~--------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 97 QALERNP--------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhCc--------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999877 55667777777777 788888666655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.053 Score=43.82 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC------CCCCCHH
Q 011587 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI------PIKPDAI 389 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~p~~~ 389 (482)
+.|+...-..|..+....|+..+|...|++...- -+--|....-.+.++....+++..|...+++. +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 4677777777888888999999999999998882 44567778888888888889999998888876 223443
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.-.+.+.+...|....|+..|+.+...-| +..........+.++|+.+++..-+..+.
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp---------g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP---------GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC---------CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33466778888999999999998888766 45555556677788887777766544443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.04 Score=48.27 Aligned_cols=183 Identities=9% Similarity=-0.007 Sum_probs=106.3
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH-H---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV-L---TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 326 (482)
+...+......+...|++++|.+.|+++.. |+. . ..-.++.+|.+.+++++|...+++..+....-...-|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333344455556667888888888888764 322 1 1234556777888888888888888775332222233333
Q ss_pred HHHHhc--c---------------Cc---HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC
Q 011587 327 FAACCH--A---------------GL---VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386 (482)
Q Consensus 327 l~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 386 (482)
+.+.+. . .+ ...|...|+.+.+ -|=...-..+|..-+..+..+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH
Confidence 333321 1 11 1234444444444 2222233344443333331011
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
-..-+ .+.+.|.+.|.+..|..-++.+++.-|+ ..........++.+|.+.|..++|......+.
T Consensus 175 a~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~-----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPD-----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCC-----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11111 3455688899999999999999998773 12455667788899999999999988776553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.012 Score=57.59 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHhc--C---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHhHHh
Q 011587 283 KNVLTWTAMATGMAIH--G---KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA--------GLVEEGLHLFDNMKSK 349 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~--~---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~ 349 (482)
.+...|...+.+.... + ....|..+|++..+.... ....|..+..++... .+...+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 4667777777764332 2 266888888888876322 234444433333211 1233444444443331
Q ss_pred cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+.+...|..+.-.....|++++|...+++. .+.|+...|..+...+...|+.++|...++++.+++|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 123445577777766667789999999999988 6778888999999999999999999999999999988
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0061 Score=50.38 Aligned_cols=88 Identities=9% Similarity=-0.080 Sum_probs=48.1
Q ss_pred hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT--DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 176 ~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
..+..+...+.. .|++++|+..|++.. .....+. ...+..+...+.+.|++++|...+.+..+.. +.+
T Consensus 36 ~~~~~lg~~~~~-----~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 105 (172)
T PRK02603 36 FVYYRDGMSAQA-----DGEYAEALENYEEAL--KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQ 105 (172)
T ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccc
Confidence 344445555555 666666666666554 2221111 2455566666666666666666666666654 344
Q ss_pred hhHHHHHHHHHHcCCChHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNA 273 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A 273 (482)
...+..+...|...|+...+
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHHHHHHHHcCChHhH
Confidence 55555556666655554433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0087 Score=52.34 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=74.1
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHh---cCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNV---HGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
+-|...|-.|...|...|+.+.|..-|.+. .+.| +...+..+..++.. ..+..++..+|+++++.++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-------- 224 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-------- 224 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC--------
Confidence 556777888888888888888887777766 3333 45555555555432 2345567778888888887
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcc
Q 011587 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467 (482)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 467 (482)
.|..+...|...+...|++.+|...|+.|.+..-..+|..
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 6777777788888888888888888888877666555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0064 Score=50.05 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
..|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++...+. .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 344555555666666666666666665442221 1235555666666666666666666666652 222333444444
Q ss_pred HHHh
Q 011587 364 DLLG 367 (482)
Q Consensus 364 ~~~~ 367 (482)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00058 Score=46.35 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=49.1
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
...|++++|.+.|+++.+..| .+...+..++.+|.+.|++++|..+++++....-
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 468999999999999999999 7899999999999999999999999998875543
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.001 Score=57.60 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=76.8
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
+.+.+++.+|...|.+.++ -.+-|..-|..-..+|.+.|.++.|++-.+.. .+.| -..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 5677899999999999998 45567888888899999999999998888776 6666 456899999999999999999
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
.+.|+++++.+|
T Consensus 169 ~~aykKaLeldP 180 (304)
T KOG0553|consen 169 IEAYKKALELDP 180 (304)
T ss_pred HHHHHhhhccCC
Confidence 999999999988
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.015 Score=49.54 Aligned_cols=188 Identities=10% Similarity=0.026 Sum_probs=92.7
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 326 (482)
+....-.....+...|++.+|.+.|+.+.. | -..+.-.++.++.+.|++++|...++++.+.-..-...-+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 344444555566667777777777777663 2 1234455666777777777777777777654221111122222
Q ss_pred HHHHhccCcHHHHHHHHHHhHHh-cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHh
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSK-WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
+.+.+.-....... ....+ ....--...+..++.-|=......+|...+..+.-..-..-+ .+...|.+.|.+.
T Consensus 84 ~~g~~~~~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~-~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL-YIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHCTT-HH
T ss_pred HHHHHHHHhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcccHH
Confidence 22222111111110 00000 000001224444555555555555665554444101111111 1456688899999
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (482)
.|..-++.+++.-|+- .........++.+|.+.|..+.+.
T Consensus 159 aA~~r~~~v~~~yp~t-----~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDT-----PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTS-----HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCC-----chHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999887731 112345567888888888877544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.17 Score=46.19 Aligned_cols=292 Identities=12% Similarity=0.070 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCCChh-hHHHHHHHhhhccC
Q 011587 43 AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF-TYVFALGSCARFCS 121 (482)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~~ll~~~~~~~~ 121 (482)
+..+......+ |+.+.|..+++.=+.+.. --..++.-|..+.| +.+..+.| |+. +|..++..-....
T Consensus 3 ~a~IA~~A~~~---GR~~LA~~LL~~Ep~~~~-qVplLL~m~e~e~A---L~kAi~Sg----D~DLi~~vLl~L~~~l~- 70 (319)
T PF04840_consen 3 YAEIARKAYEE---GRPKLATKLLELEPRASK-QVPLLLKMGEDELA---LNKAIESG----DTDLIYLVLLHLKRKLS- 70 (319)
T ss_pred HHHHHHHHHHc---ChHHHHHHHHHcCCChHH-HHHHHhcCCchHHH---HHHHHHcC----CccHHHHHHHHHHHhCC-
Confidence 44555566667 999999999886554322 22334443555555 55666666 333 4555554322222
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCC-cccccchHHHH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS-KKAKDCAFNAL 200 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~a~ 200 (482)
.. +++. ++.. .|.. ..+...|++..+.+.-.++|.+-.+........+-.++.... .........|.
T Consensus 71 ---~s---~f~~-il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~ 138 (319)
T PF04840_consen 71 ---LS---QFFK-ILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQ 138 (319)
T ss_pred ---HH---HHHH-HHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 21 2333 2222 2222 334556667667777666665433222122222222221100 00011223334
Q ss_pred HHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHH----hCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 011587 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK----TFYMPENDVFIGTALVDMYSKCGCLDNALLI 276 (482)
Q Consensus 201 ~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~ 276 (482)
+.|.... +......++. +-.++++.-.+ .+. .....+.+.-+.-+...|+...|.++
T Consensus 139 ~~y~~~k--------~~~f~~~~~e---------~q~~Ll~~Q~~Le~~~~~--~f~~~Sl~~Ti~~li~~~~~k~A~kl 199 (319)
T PF04840_consen 139 KLYSKSK--------NDAFEAKLIE---------EQIKLLEYQKELEEKYNT--NFVGLSLNDTIRKLIEMGQEKQAEKL 199 (319)
T ss_pred HHHHhcc--------hhHHHHHHHH---------HHHHHHHHHHHHHHHhcc--chhcCCHHHHHHHHHHCCCHHHHHHH
Confidence 4443332 1111111111 11122221111 111 11122334456667788999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH
Q 011587 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356 (482)
Q Consensus 277 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 356 (482)
-.+..-|+..-|-..+.+++..++|++...+-.. . -++.-|..++.+|.+.|+..+|..+..++..
T Consensus 200 ~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-------- 265 (319)
T PF04840_consen 200 KKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKEASKYIPKIPD-------- 265 (319)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHHHHHHHHhCCh--------
Confidence 9999889999999999999999999988876432 1 1447788999999999999999888777321
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 397 (482)
..-+..|.++|++.+|.+.-.+.+ |...+..+...
T Consensus 266 ---~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~ 300 (319)
T PF04840_consen 266 ---EERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKR 300 (319)
T ss_pred ---HHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 445788899999999987766643 45444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.27 Score=48.08 Aligned_cols=231 Identities=13% Similarity=0.051 Sum_probs=111.9
Q ss_pred CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-CCChh--------h----HHHHhcC--CCCccHHHHHHHHHHCCC
Q 011587 37 KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-PPNLF--------L----FNTLIRC--TPPQDSVLVFAYWVSKGL 101 (482)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~--------~----~~~ll~~--~~~~~a~~~~~~m~~~~~ 101 (482)
.|.+..+..+..+.... -+++.|+..|=+.. -+.+. . -.+-+.+ |.+++|.++|-+|.++++
T Consensus 689 nPHprLWrllAe~Al~K---l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFK---LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHH---HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 46677777777777666 67777777775543 12110 0 0111222 777777777776655431
Q ss_pred CCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHH
Q 011587 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF--MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179 (482)
Q Consensus 102 ~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 179 (482)
.+....+.| + +-.+.++++.--. +. ..-..+++.+...++....|++|.+.+..... . .
T Consensus 766 ----------Aielr~klg-D--wfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--~---e 826 (1189)
T KOG2041|consen 766 ----------AIELRKKLG-D--WFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--T---E 826 (1189)
T ss_pred ----------hHHHHHhhh-h--HHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--h---H
Confidence 233344444 4 5544444332100 00 00123556666666666666666666654321 1 1
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
..+.++.+ ..++++...+-+.+ +-|....-.+...+.+.|.-++|.+.+- +.+. | .+
T Consensus 827 ~~~ecly~-----le~f~~LE~la~~L-------pe~s~llp~~a~mf~svGMC~qAV~a~L---r~s~-p-------ka 883 (1189)
T KOG2041|consen 827 NQIECLYR-----LELFGELEVLARTL-------PEDSELLPVMADMFTSVGMCDQAVEAYL---RRSL-P-------KA 883 (1189)
T ss_pred hHHHHHHH-----HHhhhhHHHHHHhc-------CcccchHHHHHHHHHhhchHHHHHHHHH---hccC-c-------HH
Confidence 23344444 44444444333333 2233344455556666666555554432 2221 1 23
Q ss_pred HHHHHHcCCChHHHHHHHHhccCCCHHHHHH--------------HHHHHHhcCChHHHHHHHHHHH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTA--------------MATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~a~~~~~~m~ 312 (482)
.+..|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|..-.|.+++.+|-
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 4455556666666666665554443322111 1233445555555555555553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.062 Score=43.45 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=56.4
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLTW 288 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 288 (482)
.|+...-..|.++....|+..+|...|++....-+ ..|..+...+.++....++...|...++++.+ .+..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f--A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIF--AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc--CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45555455556666666666666666666655555 44566666666666666666666666665543 122233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
-.+...|...|++.+|..-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 34445555566666666666665554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.017 Score=43.98 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHHhhhccCCCCcC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPT--DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.|+.++|+.+|++.. ..|.... ...+..+.+.+...|++++|..+++........++.+......+..++...|+.
T Consensus 14 ~G~~~~Ai~~Y~~Al--~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 14 LGREEEAIPLYRRAL--AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred cCCHHHHHHHHHHHH--HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH
Confidence 455555555555554 4443332 223444445555555555555555555443210011222222223344444555
Q ss_pred HHHHHHHHhccCCCHHHHHH
Q 011587 271 DNALLIFSRMREKNVLTWTA 290 (482)
Q Consensus 271 ~~A~~~~~~~~~~~~~~~~~ 290 (482)
++|.+.+-....++...|..
T Consensus 92 ~eAl~~~l~~la~~~~~y~r 111 (120)
T PF12688_consen 92 KEALEWLLEALAETLPRYRR 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555444433333333333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.006 Score=53.07 Aligned_cols=101 Identities=20% Similarity=0.128 Sum_probs=83.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 373 (482)
-+.+.+++.+|+..|.+.++... -|++.|..=..+|++.|.++.|.+-.+....- -+-....|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 46678999999999999999753 37888888899999999999999988887762 2334678999999999999999
Q ss_pred HHHHHHHcC-CCCCCHHHHHHHHHH
Q 011587 374 EAYNFIMGI-PIKPDAILWRSLLSA 397 (482)
Q Consensus 374 ~A~~~~~~~-~~~p~~~~~~~l~~~ 397 (482)
+|.+.|++. .+.|+-.+|-.=+..
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999988 888987777544433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.2 Score=45.72 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 400 (482)
.+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+++..++|++-.++... +..+.-|...+.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34455555666677776666664443 33 6777888888888888888877766543 2344667777888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 401 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
.|...+|..+..+ . ++ ..-+..|.++|+|.+|.+.
T Consensus 250 ~~~~~eA~~yI~k-----~--------~~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK-----I--------PD----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh-----C--------Ch----HHHHHHHHHCCCHHHHHHH
Confidence 8888888777765 2 11 3456677788888877664
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0027 Score=43.02 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=30.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWR 392 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 392 (482)
+.|++++|..+|+.+... .+-+...+..+..+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 345556666666665552 2334555555555666666666666666555 3344433333
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.034 Score=54.46 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILW 391 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 391 (482)
+...|..+.-.+...|++++|...++++... .|+...|..+...+...|+.++|.+.+++. .+.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 4455665555555567788888887777763 356777777777777788888887777665 445544444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.015 Score=52.54 Aligned_cols=132 Identities=15% Similarity=0.172 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcCC---C-----CCCH
Q 011587 322 TFTSLFAACCHA-GLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGIP---I-----KPDA 388 (482)
Q Consensus 322 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-----~p~~ 388 (482)
.+..+...|... |+++.|.+.|++..+-+.-... ..++..+...+.+.|++++|.++|++.+ . +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455566666 7888888888887763211111 3456677788889999999999998761 1 1122
Q ss_pred H-HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC--CCchHHHHHHHHh
Q 011587 389 I-LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA--ERWPDVESVRKQM 456 (482)
Q Consensus 389 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m 456 (482)
. .|-..+-++...||...|.+.+++.....|.-. + .........|+.++-.. ..++++..-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~--~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA--S-SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST--T-SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--C-cHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2 222233355667899999999999888766210 0 11233444566665542 3344555444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.27 Score=45.65 Aligned_cols=413 Identities=10% Similarity=0.063 Sum_probs=222.3
Q ss_pred cCcchHHHHHHHHHHhcCCC----C-chHHHHHHHHHhcCCCCCChHHHHHHhhcCCCC-ChhhHHHHhcC------CCC
Q 011587 19 TTPSHIKQIHAQLITNALKS----P-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP-NLFLFNTLIRC------TPP 86 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~----~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ll~~------~~~ 86 (482)
++..++..|+....+.--.. . ....+.++++|.. .+.+.....+....+. ....|-.+..+ +.+
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 88999999998887653222 1 4456888889887 5777777666655421 12334444444 999
Q ss_pred ccHHHHHHHHHHC--CCCCC-----------ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCC----CCchhHHHH
Q 011587 87 QDSVLVFAYWVSK--GLLTF-----------DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF----MFNVLVATT 149 (482)
Q Consensus 87 ~~a~~~~~~m~~~--~~~p~-----------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 149 (482)
++|++.+....+. +-.|+ |-.-=+..+..+...| . +.+++.+++++...=+ ..+..+|+.
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~--f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-R--FSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-C--cchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 9999999888765 33331 1222245566677777 7 9999999998876533 478888988
Q ss_pred HHHHHHhCC--------ChhHHHHHh-------ccCCCCCch----------hHHHHHHHHhcCCcccccchHHHHHHHH
Q 011587 150 LIHFYASNK--------DISSGKKVF-------DQMPMRSSA----------TWNAMINGYCSQSKKAKDCAFNALVLFR 204 (482)
Q Consensus 150 l~~~~~~~g--------~~~~A~~~~-------~~~~~~~~~----------~~~~li~~~~~~~~~~~~~~~~a~~~~~ 204 (482)
++-++.+.= ..+-+.+.+ ++|..-+.. ...+++....--. ..+..--+++++
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p---~e~l~~~mq~l~ 249 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVP---KERLPPLMQILE 249 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCC---HhhccHHHHHHH
Confidence 666665431 111112222 111111111 1112222111100 122222333444
Q ss_pred HhhhccCCCCcCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 205 DMLVDVSGVKPTDT-TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP--ENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 205 ~m~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
... ..-+.|+.. ....+...+.+ +.+++..+-+.+......| ..-..+|..++....+.++...|.+.+.-+.
T Consensus 250 ~We--~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 250 NWE--NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHH--hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 443 344555543 23344444443 4455555554444332200 1123455666666666777766666665443
Q ss_pred --CCCHHHHH-------HHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HhccCc-HHHHHHHHH
Q 011587 282 --EKNVLTWT-------AMATGMAI----HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA---CCHAGL-VEEGLHLFD 344 (482)
Q Consensus 282 --~~~~~~~~-------~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~-~~~a~~~~~ 344 (482)
+|+...-. .+-+..+. .-+..+-+.+|+......+. .......|+.+ +=+.|. -++|.++++
T Consensus 326 ~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 326 ILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred hcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 33222111 11111121 11223334455555444332 11112222222 223344 778888888
Q ss_pred HhHHhcCCCcCHHHHHHHH----HHHhcc---CCHH---HHHHHHHcCCCCC----CHHHHHHHHHH--HHhcCCHhHHH
Q 011587 345 NMKSKWGVEPHIKHYSCIV----DLLGRA---GHLE---EAYNFIMGIPIKP----DAILWRSLLSA--CNVHGDVALGE 408 (482)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~ 408 (482)
.+.+- -+-|..+-|.+. .+|... ..+. +-..+.++.|+.| +...-|.|..| +..+|++.++.
T Consensus 405 ~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 88762 122333333222 222221 1122 2234455557776 34455666665 46789999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
-.-..+.+..| ++.+|..+.-.+....++++|..++.++.
T Consensus 483 ~ys~WL~~iaP---------S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP---------SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC---------cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 88888887665 88999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.021 Score=43.43 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=65.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CcCHHHHHHHHHHHh
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPN--AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV-EPHIKHYSCIVDLLG 367 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~ 367 (482)
+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++....+.- +.+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888887775543 234555667777888888888888887764211 002223333445667
Q ss_pred ccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 011587 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 399 (482)
..|+.++|++.+-.. +.++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~-la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA-LAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 778888887776543 1123334444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.14 Score=44.76 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=105.4
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHH---HHHHHHHHcCCChHHHHHHHHhccC--C--CHHHHHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG---TALVDMYSKCGCLDNALLIFSRMRE--K--NVLTWTAMA 292 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li 292 (482)
+-.....+...|++++|.+.|+.+.... |.+.... -.++.+|.+.+++++|...+++..+ | ....|...+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3334455567899999999999998876 3333333 4567888999999999999998874 2 122333333
Q ss_pred HHHHh--cC---------------Ch---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 293 TGMAI--HG---------------KG---NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 293 ~~~~~--~~---------------~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
.+.+. .+ +. .+|...|+. ++.-|=.+.-.++|...+..+..+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------li~~yP~S~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------LVRGYPNSQYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------HHHHCcCChhHHHHHHHHHHHHHH---
Confidence 33321 11 11 223334444 444444444455666555555442
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-----PIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
-...--.+..-|.+.|.+..|..=++.+ +.+........++.+|...|..++|.++...+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0112224566788888888776666665 222345566777888888898888888776543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0026 Score=42.63 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=40.5
Q ss_pred HHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 362 IVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...|+++++..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 345667777777777777777 4445 556667777777777888888888877777766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.014 Score=44.92 Aligned_cols=81 Identities=10% Similarity=0.144 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH---------------HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSM---------------RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m---------------~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 350 (482)
.++..+|.++++.|+.+....+++.. ......|+..+..+++.+|+..+++..|.++++...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34444555555555555555554433 122345778888888888888888888888888888878
Q ss_pred CCCcCHHHHHHHHHHH
Q 011587 351 GVEPHIKHYSCIVDLL 366 (482)
Q Consensus 351 ~~~~~~~~~~~li~~~ 366 (482)
+++.+..+|..|++-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8777778888777644
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0033 Score=50.42 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH-----hcCCccC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK-----VKRVETE 464 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~ 464 (482)
+...++..+...|+++.|..+++.++..+| -+...|..++.+|.+.|+..+|.+.++++. +.|+.|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP--------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST--------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 455567778889999999999999999999 899999999999999999999999998875 5688887
Q ss_pred Ccc
Q 011587 465 PGS 467 (482)
Q Consensus 465 ~~~ 467 (482)
+.+
T Consensus 136 ~~~ 138 (146)
T PF03704_consen 136 PET 138 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.029 Score=51.06 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=83.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCcCHHHH------------
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA--ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY------------ 359 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------ 359 (482)
++...|++++|...--..++.... + .+..++. ++.-.++.+.+...|++..+ ..|+...-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 455566777666655554443211 1 1222222 22335566666666666654 23332211
Q ss_pred -HHHHHHHhccCCHHHHHHHHHcC-CC-----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchh
Q 011587 360 -SCIVDLLGRAGHLEEAYNFIMGI-PI-----KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432 (482)
Q Consensus 360 -~~li~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
..=..-..+.|++.+|.+.+.+. ++ +|+...|.....+..+.|+.++|..-.+++...++ .-...
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~--------syika 323 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS--------SYIKA 323 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH--------HHHHH
Confidence 11122334567777777777665 33 33445555555566677777777777777777666 34444
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 433 FVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
|..-.+++.-.++|++|.+-+++..+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555556667777776666655433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0038 Score=42.99 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=53.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
..|.+.+++++|.++++++++.+| .+...+.....++.+.|++++|...++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--------DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 567899999999999999999999 7899999999999999999999999999886554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.35 Score=44.92 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHH-HHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWG-VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILW-RSLLSA 397 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 397 (482)
..|...+.+..+...++.|..+|-++.+. + +.+++..+++++..++. |+...|.++|+-- ..-||...| +..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44666777777777888899999998885 6 66788888888887765 6777888888754 334555444 556666
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCC--chhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACT--SEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+...++-+.|..+|+..++.-. .+ ...|..++..-..-|+...+..+-+.|.
T Consensus 476 Li~inde~naraLFetsv~r~~--------~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLE--------KTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHH--------HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 7788888889889886655333 22 5678888888888888877766655554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.049 Score=46.57 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=90.7
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCC---CCc
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP---END 253 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~ 253 (482)
..+.++..+.- .+.+.-.+..+++.. +...+-++.....+++...+.|+.+.|...++...+..-.- ...
T Consensus 179 Vmy~~~~~llG-----~kEy~iS~d~~~~vi--~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 179 VMYSMANCLLG-----MKEYVLSVDAYHSVI--KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHhc-----chhhhhhHHHHHHHH--HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 34556666666 777777788888877 54545567777788888888888888888888766533200 223
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 324 (482)
..+.......|.-.+++..|...|.++.. .|...-|.-.-+..-.|+..+|++.++.|... .|...+-+
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 33333444556667778888888877764 34555555555556677888888888888775 34444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.32 Score=44.34 Aligned_cols=311 Identities=12% Similarity=0.018 Sum_probs=193.8
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHH--HhCCChh
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY--ASNKDIS 161 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~ 161 (482)
..+..+...|..-++. ..|-.+-..+.-.| -|+-..|.++-.+..+. +..|..-.-.|+..- .-.|+++
T Consensus 67 ~sP~t~~Ryfr~rKRd-------rgyqALStGliAag-AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 67 ESPYTARRYFRERKRD-------RGYQALSTGLIAAG-AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred hCcHHHHHHHHHHHhh-------hHHHHHhhhhhhhc-cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchH
Confidence 4555666666666542 34556666666666 55577887776665432 244545455555443 3469999
Q ss_pred HHHHHhccCCC-CCc--hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHH
Q 011587 162 SGKKVFDQMPM-RSS--ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGA 237 (482)
Q Consensus 162 ~A~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 237 (482)
.|.+-|+.|.. |.. .-...|.-.-.+ .|..+.|.+.-++.- +.-| -.......+...+..|+|+.|.
T Consensus 138 ~Ar~kfeAMl~dPEtRllGLRgLyleAqr-----~GareaAr~yAe~Aa----~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 138 DARKKFEAMLDDPETRLLGLRGLYLEAQR-----LGAREAARHYAERAA----EKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred HHHHHHHHHhcChHHHHHhHHHHHHHHHh-----cccHHHHHHHHHHHH----hhccCCchHHHHHHHHHHhcCChHHHH
Confidence 99999999974 211 112233333344 777777777776653 3344 3567888899999999999999
Q ss_pred HHHHHHHHhCCCCCCchh--HHHHHHHHHH---cCCChHHHHHHHHhcc--CCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 011587 238 CVHGYMEKTFYMPENDVF--IGTALVDMYS---KCGCLDNALLIFSRMR--EKNVL-TWTAMATGMAIHGKGNEAIRLLD 309 (482)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~a~~~~~ 309 (482)
++.+.-....+. +++.. .-..|+.+-. -.-+...|...-.+.. .||.. .--.-..++.+.|+..++-.+++
T Consensus 209 kLvd~~~~~~vi-e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 209 KLVDAQRAAKVI-EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 999987765542 22222 1122222211 1224455555544443 24433 23334567899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD 387 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 387 (482)
.+-+....|+.. .+..+.+.|+ .+..-+++..+--.++| +..+--.+.++-...|++..|..--+.. ...|.
T Consensus 288 ~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 288 TAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 998886666532 2223445554 34444444433223333 4566677778888889998887666655 55788
Q ss_pred HHHHHHHHHHH-HhcCCHhHHHHHHHHHHhcCC
Q 011587 388 AILWRSLLSAC-NVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 388 ~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|-.|...- ...||-.++..++.+.++.-.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 88888887764 456999999999999887543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.15 Score=47.11 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccCC-------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMREK-------NVLTWTAMATGMAI---HGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
..++-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 45555677777788888887777653 12222233445556 788888888888866555667777877776
Q ss_pred HHHhc---------cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC-HH---HHHHHH---Hc----CC---C
Q 011587 328 AACCH---------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH-LE---EAYNFI---MG----IP---I 384 (482)
Q Consensus 328 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~A~~~~---~~----~~---~ 384 (482)
..|-. ....++|...|.+.-+ +.|+..+--.++..+...|. .+ +..++- .. -+ -
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 2236677777665543 34554332222222333332 11 222222 11 11 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 385 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..+-..+.+++.++.-.|+.++|.+..+++.+..+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 24566678888899999999999999999999877
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0038 Score=42.39 Aligned_cols=61 Identities=16% Similarity=-0.031 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHhc
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNALLIFSRM 280 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~ 280 (482)
..+|..+...+...|++++|...|++.++.. +.+...+..+..+|.+.| ++++|++.+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4455666666666666666666666666665 556666666666666666 566666666554
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.18 Score=43.33 Aligned_cols=133 Identities=12% Similarity=0.005 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH---
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI--- 362 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 362 (482)
.+.+.++..+.-.|.+.-.+..+++.++...+.++.....|.+.-.+.||.+.|...|++..+. .-..+....+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 4566777777778889999999999999876778888889999999999999999999987764 323333333333
Q ss_pred --HHHHhccCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 363 --VDLLGRAGHLEEAYNFIMGIP--IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 363 --i~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|.-.+++..|...+.++. -..|+...|.-.-+..-.|+...|.+..+.+.+..|
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344566778889999998872 123555555544455567999999999999999887
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.019 Score=50.67 Aligned_cols=86 Identities=10% Similarity=0.007 Sum_probs=37.9
Q ss_pred hccCCHHHHHHHHHcC-CCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 367 GRAGHLEEAYNFIMGI-PIKPDA----ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
.+.|++++|...|+.. ...|+. ..+-.+..+|...|++++|...|+.+++..|+- ......+..++..+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s-----~~~~dAl~klg~~~~ 228 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS-----PKAADAMFKVGVIMQ 228 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----cchhHHHHHHHHHHH
Confidence 3344555555554444 222221 233334444555555555555555555444410 012223333344444
Q ss_pred hCCCchHHHHHHHHhH
Q 011587 442 SAERWPDVESVRKQMK 457 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~ 457 (482)
..|++++|...++++.
T Consensus 229 ~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 229 DKGDTAKAKAVYQQVI 244 (263)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.17 Score=49.06 Aligned_cols=49 Identities=6% Similarity=-0.033 Sum_probs=29.5
Q ss_pred HHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHH
Q 011587 30 QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVS 98 (482)
Q Consensus 30 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~ 98 (482)
.+.+.|-.|+.. ++...|+-. |.+.+|-++|.+. |.-.+|+++|..|+-
T Consensus 625 ~~k~rge~P~~i---LlA~~~Ay~---gKF~EAAklFk~~--------------G~enRAlEmyTDlRM 673 (1081)
T KOG1538|consen 625 ERKKRGETPNDL---LLADVFAYQ---GKFHEAAKLFKRS--------------GHENRALEMYTDLRM 673 (1081)
T ss_pred HHHhcCCCchHH---HHHHHHHhh---hhHHHHHHHHHHc--------------CchhhHHHHHHHHHH
Confidence 344456555543 334444545 7788888887765 555667777766653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.25 Score=45.34 Aligned_cols=162 Identities=12% Similarity=-0.068 Sum_probs=97.8
Q ss_pred cCHHHHHHHH-HHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH-------
Q 011587 215 PTDTTMVCVL-SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL------- 286 (482)
Q Consensus 215 p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------- 286 (482)
|.-.++..+- .++.-.++.+.|.++-...++.. +.+......-..++--.++.+.|...|++...-+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 3334444333 44567788888888877777766 334433333333444567888899988888752221
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC
Q 011587 287 --------TWTAMATGMAIHGKGNEAIRLLDSMRDC---GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355 (482)
Q Consensus 287 --------~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 355 (482)
.+..=..-..+.|++..|.+.+.+.+.. ++.|+...|........+.|+..+|+.--++..+- .+.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---D~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---DSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---CHH
Confidence 1222223345678888888888887653 34556666666667777788888888777776651 111
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 356 -IKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 356 -~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
...|..-..++.-.++|++|.+-++..
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222234445567777777777765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.037 Score=44.28 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCcCHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS----KWGVEPHIKHY 359 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 359 (482)
.+...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+...|.++|+++.+ ..|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345556666777788888888888777764 33677777888888888888888777777653 24777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.11 Score=45.69 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=50.6
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHG---KGNEAIRLLDSMRDCGVKPNAVTFT 324 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~ 324 (482)
|.|...|-.|..+|...|+.+.|..-|.+..+ ++...+..+..++..+. ...++..+|+++...... |..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 44555566666666666666666666655543 34444444444332221 234555566665554322 444444
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHH
Q 011587 325 SLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 325 ~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 455555556666666666666655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.35 Score=41.12 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=93.2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC--HHHHHHHHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN--VLTWTAMATGM 295 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~ 295 (482)
+-.....+...|++.+|.+.|+.+.......+........++.++.+.|+++.|...+++..+ |+ ...+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 334445566788999999999999887532234455566788889999999999999988764 22 12222222222
Q ss_pred HhcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVK---PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
+......... ....... --...|..++.-|=.+.-..+|...+..+... =...--.+..-|.+.|.+
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-----la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-----LAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTT-H
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcccH
Confidence 2111111110 0000000 01123444555555555566666655555542 011222355667788888
Q ss_pred HHHHHHHHcC-CCCC----CHHHHHHHHHHHHhcCCHhHHH
Q 011587 373 EEAYNFIMGI-PIKP----DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
..|..-++.+ .--| .....-.++.+|.+.|..+.+.
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8776666655 1112 2234566677777777766443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0054 Score=42.90 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC-chhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT-SEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
..+++.+...|...|++++|+..|+++++.....+ +-.|+ ..++..+..++...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG--DDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35788889999999999999999999987621110 00122 6678899999999999999999998765
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.27 Score=37.41 Aligned_cols=141 Identities=11% Similarity=0.136 Sum_probs=86.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
+.-.|..++..+++.+..... +..-||.+|.-....-+-+-..++++..-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 345677777778777776542 4556666666555555555555565555542211 24556666
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHH
Q 011587 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 375 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
....+-.++ .+...+...+..+..+|+-+.-.+++.++.+.+. +++.....+..+|.+.|+..++.+++.
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~--------~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEE--------INPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccC--------CCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 666665554 2445556677788889999999999998887665 788899999999999999999999999
Q ss_pred HhHhcCCc
Q 011587 455 QMKVKRVE 462 (482)
Q Consensus 455 ~m~~~~~~ 462 (482)
+.-++|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 98888874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.28 Score=45.32 Aligned_cols=166 Identities=12% Similarity=0.063 Sum_probs=106.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDCG---VKPNAVTFTSLFAACCH---AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
.++-+|....+++..+++.+.|...- +.-....-....-++.+ .|+.++|.+++..+... .-.++..+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45556889999999999999998751 11122222234445566 89999999999996653 6678888888887
Q ss_pred HHHh----c-----cCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCC-Hh---HHHHHH----HHHHhcCCCccccc
Q 011587 364 DLLG----R-----AGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGD-VA---LGEKVG----KILLQLQPEVTFVD 425 (482)
Q Consensus 364 ~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~~~~~~~~~~~~~ 425 (482)
..|- . ....++|...|.+. .+.|+..+=-.+...+...|. ++ +..++- ....+.+. .+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~----~~ 300 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS----LE 300 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc----cc
Confidence 7663 2 22477888888877 555654432222222222332 22 223333 22223332 11
Q ss_pred ccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
-..+..-+.+++.++.-.|++++|.+..++|.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 12566777799999999999999999999998664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.055 Score=47.82 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC----CHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP----DAILWRSL 394 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l 394 (482)
..|...+..+.+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ ...| ....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455444444556778888888887777421110 0245566777777788888887777776 2222 23344445
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+...|+.+.|...++.+++..|
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5566678888888888888888776
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.038 Score=42.52 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHH--------------hcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKS--------------KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-- 382 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 382 (482)
|..++..++.++++.|+++....+++..-. .....|+..+..+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 467889999999999999999888865321 1234578899999999999999999998888766
Q ss_pred --CCCCCHHHHHHHHHHHHhc
Q 011587 383 --PIKPDAILWRSLLSACNVH 401 (482)
Q Consensus 383 --~~~p~~~~~~~l~~~~~~~ 401 (482)
+++-+..+|..|+.-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 7666788898888765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.026 Score=51.29 Aligned_cols=261 Identities=13% Similarity=0.019 Sum_probs=144.2
Q ss_pred ccchHHHHHHHHHhhhccCCCCc---CHHHHHHHHHHhhccCchHHHHHHHHHHH--H--hCCCCCCchhHHHHHHHHHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKP---TDTTMVCVLSVSSQLGLLEFGACVHGYME--K--TFYMPENDVFIGTALVDMYS 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~p~~~~~~~~~li~~~~ 265 (482)
.|+....+.+|+... +.|-.. =..+|..|.++|.-.+++++|.++...=+ . .|-. .........|.+.+-
T Consensus 30 ~gdcraGv~ff~aA~--qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk-lGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAAL--QVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK-LGEAKSSGNLGNTLK 106 (639)
T ss_pred ccchhhhHHHHHHHH--HhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch-hccccccccccchhh
Confidence 566666666666655 433211 12345556666666667777666543211 1 1100 112223334555555
Q ss_pred cCCChHHHHHHHHhccC---------CCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHH----H
Q 011587 266 KCGCLDNALLIFSRMRE---------KNVLTWTAMATGMAIHGK--------------------GNEAIRLLDSM----R 312 (482)
Q Consensus 266 ~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m----~ 312 (482)
-.|.+++|.-.-.+-.. ....++..+...|...|+ ++.|.++|.+= .
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666544332221 112233334444443332 23344444321 1
Q ss_pred hCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhH---HhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHcC-----
Q 011587 313 DCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMK---SKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMGI----- 382 (482)
Q Consensus 313 ~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~----- 382 (482)
+.|-. .-...|..|-..|.-.|+++.|+...+.-. +.+|-... ...+..+..++.-.|+++.|.+.|+..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 12210 122345566666666788998877655422 22343322 346777888888999999998887654
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 383 --PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 383 --~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
|-+ ......-+|...|.-..++++|+.++.+-+..-.+. .+..-....+.+|..+|...|..++|+...+.-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 311 234455567788888889999998887755422210 01124577889999999999999999987766543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0075 Score=42.14 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-------C-CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-------P-IKPD-AILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.+++.+...|...|++++|++.|++. | -.|+ ..++..+...+...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666666777777666666554 1 1122 44566666677777777777777776654
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.99 Score=42.09 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
.+|...+....+..-.+.|..+|-+..+.| +.++...+++++..++. |+...|.++|+--... ++-+..--+-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 367777888888888999999999999998 67888999999998765 8889999999987773 3334444455667
Q ss_pred HHhccCCHHHHHHHHHcC--CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 365 LLGRAGHLEEAYNFIMGI--PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
-+...++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.+.-|
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 778899999999999966 33333 56899999988999999999888888887766
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.6 Score=43.54 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHH
Q 011587 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394 (482)
Q Consensus 315 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 394 (482)
|......+.+--+.-+...|+..+|.++-.+.+- |+-..|-.-+.+++..+++++-+++-+.+. .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 3334445555566666777888888888666643 788888888999999999999888888763 24446667
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHH
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (482)
+.+|.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.++-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l------------~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL------------Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh------------H----HHHHHHHHhccHHHHHHHH
Confidence 88899999999998887643211 1 5677888999988887653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.058 Score=43.01 Aligned_cols=85 Identities=8% Similarity=-0.048 Sum_probs=44.7
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 407 (482)
+...|++++|..+|.-+..- + .-+..-+..|..++-..+++++|...|... -+ .-|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 33556666666666666551 2 223444555555555666666666666544 00 11222233344555666666666
Q ss_pred HHHHHHHHh
Q 011587 408 EKVGKILLQ 416 (482)
Q Consensus 408 ~~~~~~~~~ 416 (482)
...|+.++.
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666555
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.028 Score=38.58 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 364 DLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..|.+.+++++|.++++.+ ...| +...+......+.+.|++++|...++.+.+..|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567778888888888777 4444 555666677777788888888888888887776
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.069 Score=46.15 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=85.8
Q ss_pred HHHHhccCC--CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC---------
Q 011587 163 GKKVFDQMP--MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG--------- 231 (482)
Q Consensus 163 A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~--------- 231 (482)
.++.|.... ++|-.+|-+.+..+....-...+.++-....++.|. +-|+.-|..+|+.|++.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~--eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK--EYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH--HhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 455666665 567788888887776632222567777788888998 8999999999999999886543
Q ss_pred -------chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHHhcc
Q 011587 232 -------LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL-DNALLIFSRMR 281 (482)
Q Consensus 232 -------~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 281 (482)
+-+-+.+++++|..+|++| |..+-..|++++.+.+-. .+..++.-.|.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmP--dkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMP--DKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCC--chHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3356789999999999965 999999999999988853 34444444444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=2.4 Score=43.03 Aligned_cols=78 Identities=12% Similarity=0.042 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHH
Q 011587 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224 (482)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~ 224 (482)
..-...+..+.+.+++.....++..- ..+...-.....+... .|+.++|....+.+- ..| ...+..+..++
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~-----~G~~~~A~~~a~~lW--~~g-~~~p~~cd~l~ 170 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWA-----TGQQQEAWQGAKELW--LTG-KSLPNACDKLF 170 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHh--ccC-CCCChHHHHHH
Confidence 33444555666777777777744232 2344444455566666 666666655555553 222 22234444444
Q ss_pred HHhhccC
Q 011587 225 SVSSQLG 231 (482)
Q Consensus 225 ~~~~~~~ 231 (482)
+.+.+.|
T Consensus 171 ~~~~~~g 177 (644)
T PRK11619 171 SVWQQSG 177 (644)
T ss_pred HHHHHcC
Confidence 4444333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.053 Score=50.70 Aligned_cols=101 Identities=9% Similarity=0.041 Sum_probs=74.9
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI----LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
+.+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|...++++++...
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn-------- 143 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN-------- 143 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--------
Confidence 345778899999999999999999999986 7788743 588899999999999999999999999744
Q ss_pred CCchhHHHHHH--HHHhCCCchHHHHHHHHhHhcCCccC
Q 011587 428 CTSEDFVALSN--IYASAERWPDVESVRKQMKVKRVETE 464 (482)
Q Consensus 428 ~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~ 464 (482)
+. |..+.. .+....+.++..++++...+-|..-.
T Consensus 144 ~~---f~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 144 LK---FSTILNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred hh---HHHHHhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 32 221111 12233345577788888887776433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.73 Score=44.83 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCcCHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPN-----AVTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVEPHIK 357 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 357 (482)
+..+++...-.|+-+.+++.+.+..+. ++.-. .-.|..++..++. ..+.+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 334445555556666666666655442 22211 1223334433332 45788899999999985 35554
Q ss_pred HHHH-HHHHHhccCCHHHHHHHHHcCC-CC-----CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc
Q 011587 358 HYSC-IVDLLGRAGHLEEAYNFIMGIP-IK-----PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430 (482)
Q Consensus 358 ~~~~-li~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
.|.. -.+.+...|++++|.+.|++.. .+ .....+--+...+...+++++|...|.++.+... .+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--------WSk 339 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--------WSK 339 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--------cHH
Confidence 4433 3456677899999999999751 11 1233444566677888999999999999999877 677
Q ss_pred hhHHHHHHH-HHhCCCc-------hHHHHHHHHhHh
Q 011587 431 EDFVALSNI-YASAERW-------PDVESVRKQMKV 458 (482)
Q Consensus 431 ~~~~~l~~~-~~~~g~~-------~~a~~~~~~m~~ 458 (482)
.+|..+.-+ +...|+. ++|..++.+...
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777655544 4467877 888888888763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.033 Score=33.70 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHH
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 437 (482)
.++..+..+|...|++++|+++++++++..| .|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P--------~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP--------DDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------CCHHHHHHhh
Confidence 3577788999999999999999999999999 6777776664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.15 Score=44.22 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=80.6
Q ss_pred HHHHHHHhcc--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----------
Q 011587 272 NALLIFSRMR--EKNVLTWTAMATGMAIH-----GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG---------- 334 (482)
Q Consensus 272 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---------- 334 (482)
..++.|.... +.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445555555 56777888887777543 567777888889999999999999999998876532
Q ss_pred ------cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHH-HHHHHH
Q 011587 335 ------LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE-EAYNFI 379 (482)
Q Consensus 335 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~ 379 (482)
+-+-+.+++++|.. +|+-||..+-..|+.++.+.+..- +..+++
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 34557899999998 799999999999999999887643 334433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.33 Score=45.62 Aligned_cols=100 Identities=11% Similarity=-0.102 Sum_probs=70.0
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch---hHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV---FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 290 (482)
+.+...++.+..++...|++++|...|++.++.. +.+. ..|..+..+|...|++++|++.+++..+-+...|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~ 148 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFST 148 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHH
Confidence 3467789999999999999999999999999887 4444 458999999999999999999999987642222321
Q ss_pred HHH--HHHhcCChHHHHHHHHHHHhCCC
Q 011587 291 MAT--GMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 291 li~--~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
+.. .+....+..+..++++.+.+.|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 01111223355556665555543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.9 Score=40.66 Aligned_cols=391 Identities=13% Similarity=0.064 Sum_probs=221.1
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHhcC-------CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFDPPNLFLFNTLIRC-------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~~~~~~~~~~ll~~-------~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
...+.++.+++.+...=+..|.-..+. |..+.+.++|++-++. +.- +...|...+..+.... |+.+...
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~-SvdlW~~Y~~f~~n~~--~d~~~lr 134 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPL-SVDLWLSYLAFLKNNN--GDPETLR 134 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhh-HHHHHHHHHHHHhccC--CCHHHHH
Confidence 455667777777664333444433333 8889999999998873 333 6666766666655533 4477788
Q ss_pred HHHHHHHHh-CCC-CchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCC---c-ccccchHHHHHHH
Q 011587 130 QIHVHVTKR-GFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS---K-KAKDCAFNALVLF 203 (482)
Q Consensus 130 ~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~-~~~~~~~~a~~~~ 203 (482)
..|+..... |.. .+...|...|..-...+++.....+++++.+-....|+.....|.+.- . ......+++.++-
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 888887764 432 245678888888888889999999998887644444444433332200 0 0011222222222
Q ss_pred HHhhhc--cCCCCcCHHHHHHHHHHhhc-cCchHHHH------------------------HHHHHHHHhC---CCC--C
Q 011587 204 RDMLVD--VSGVKPTDTTMVCVLSVSSQ-LGLLEFGA------------------------CVHGYMEKTF---YMP--E 251 (482)
Q Consensus 204 ~~m~~~--~~~~~p~~~~~~~l~~~~~~-~~~~~~a~------------------------~~~~~~~~~~---~~p--~ 251 (482)
.....+ ..-..+.......-++-... .+..+.+. ..++.-.+.. +.| +
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 111100 00000111111111111110 11111111 1111111111 011 2
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV--KPNAVTFTSL 326 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l 326 (482)
.+..+|..-+.--.+.|+.+.+.-+|++...| -...|-..+.-....|+.+-|..++....+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35667888888889999999999999998765 334555555555566898888888877655433 2333333333
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCcCHH-HHHHHHHHHhccCCHHHHH---HHHHcC-CCCCCHHHHHHHHHH----
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIK-HYSCIVDLLGRAGHLEEAY---NFIMGI-PIKPDAILWRSLLSA---- 397 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~~---- 397 (482)
+. -..|+.+.|..+++.+.++ + |+.. .-..-+....+.|..+.+. +++... ..+-+..+...+.--
T Consensus 375 f~--e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FE--ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HH--HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 32 3468999999999999984 3 5432 2233344556778888877 454444 112222222222222
Q ss_pred -HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc---hHHHHHHHHhHhcCCccC
Q 011587 398 -CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW---PDVESVRKQMKVKRVETE 464 (482)
Q Consensus 398 -~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~ 464 (482)
+.-.++.+.|..++.++.+..+ ++...|..+++.....+.. +--.-++..+.+..+.++
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~--------~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~ 512 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILP--------DCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFD 512 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCC--------ccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhcccc
Confidence 3446899999999999999999 8999999999988776633 222334444444444333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.017 Score=32.66 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=30.2
Q ss_pred HHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHH
Q 011587 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 451 (482)
|+++++.+| .+...|..+..+|...|++++|++
T Consensus 2 y~kAie~~P--------~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNP--------NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCC--------CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999 899999999999999999999863
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.33 E-value=3.5 Score=43.50 Aligned_cols=144 Identities=16% Similarity=0.127 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
.|.-.++.--+.|.+++|+.++.--.+.-...|.+...-+.....+++|.-.|+..-+ ....+.+|..+|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 3444555555666666666665543333344555555566667778888777766422 2245677788888
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
+.+|..+..++.. +-.--..+-..|+.-+...+++-+|-+++.+..-.|.. .+..+++...+++|.++.....
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 8888888777765 22222333366777778888888888887777433322 2233445555666665554433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.38 Score=44.15 Aligned_cols=93 Identities=11% Similarity=0.038 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
.++..+.-+|.+.+++.+|++...+. .. ++|....--=..++...|+++.|+..|+++++..| .|...-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P--------~Nka~~~ 329 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP--------SNKAARA 329 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC--------CcHHHHH
Confidence 46677888889999999998887766 33 34666665567788889999999999999999999 6777777
Q ss_pred HHHHHHHhCCCchHH-HHHHHHhH
Q 011587 435 ALSNIYASAERWPDV-ESVRKQMK 457 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a-~~~~~~m~ 457 (482)
-|+..-.+...+.+. .++|..|-
T Consensus 330 el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 330 ELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777666655544 56777775
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.7 Score=41.76 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=133.8
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc-------CC--CHHHHHHHHHHHHhcCC
Q 011587 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-------EK--NVLTWTAMATGMAIHGK 300 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~~~ 300 (482)
..+.+.+...+.+.+..-........++..+..+.++.|.+++++..--... +. -..+|..+..++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444433211001233455666777888888887765432221 11 12456666677766667
Q ss_pred hHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc-----CHHHHHHHHHHHhccCC
Q 011587 301 GNEAIRLLDSMRD-CGVKP---NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-----HIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 301 ~~~a~~~~~~m~~-~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~ 371 (482)
+.+++.+-..-.. .|..| ......++-.++...+.++++.+.|+...+- --.. ....+..|...|.+..+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeeehhhhHHHHHHHHHh
Confidence 7777766554333 23322 1233445667788888999999999887762 2111 23578889999999999
Q ss_pred HHHHHHHHHcC-------CCCCCHHHHHH-----HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 372 LEEAYNFIMGI-------PIKPDAILWRS-----LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 372 ~~~A~~~~~~~-------~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
.++|.-+..+. ++.--...|.. |.-++...|....|.+..++..+.....+ +-.........+.+.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDI 255 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADI 255 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHH
Confidence 99886554433 44332333333 34467788999999999998877544211 001223344588899
Q ss_pred HHhCCCchHHHHHHHH
Q 011587 440 YASAERWPDVESVRKQ 455 (482)
Q Consensus 440 ~~~~g~~~~a~~~~~~ 455 (482)
|...|+.|.|..-+++
T Consensus 256 yR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcccHhHHHHHHHH
Confidence 9999998888776665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.2 Score=43.52 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC---HHHHHHHHHHHhccCCHHHHHHHHHcC----CCCC-CHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH---IKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKP-DAILWRS 393 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 393 (482)
.|+.-+..+ +.|++..|..-|....+ +++-+ ...+-.|.+++...|+.++|...|..+ +-.| -+..+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455444433 44556666666666666 23222 223444566666666666666665554 2222 2244444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|.....+.|+.++|...|+++.+.-|
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 55555666666666666666666655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.98 Score=43.38 Aligned_cols=160 Identities=15% Similarity=0.158 Sum_probs=106.5
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.++++.+.+..+.-.- ...++ ..-.+.++..+.+.|..+.|.++. .|.. .-.+...+.|+++.
T Consensus 274 ~~d~~~v~~~i~~~~l-l~~i~--~~~~~~i~~fL~~~G~~e~AL~~~-----------~D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNL-LPNIP--KDQGQSIARFLEKKGYPELALQFV-----------TDPD---HRFELALQLGNLDI 336 (443)
T ss_dssp TT-HHH-----HHHHT-GGG----HHHHHHHHHHHHHTT-HHHHHHHS-----------S-HH---HHHHHHHHCT-HHH
T ss_pred cCChhhhhhhhhhhhh-cccCC--hhHHHHHHHHHHHCCCHHHHHhhc-----------CChH---HHhHHHHhcCCHHH
Confidence 7778887776652110 11222 445778888889999999888773 3432 34556778999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 273 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
|.++.++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+....+ |
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c-
Confidence 998877665 566999999999999999999999998653 445666677788988888888777763 3
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCC
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 387 (482)
-++....++.-.|+.++..+++.+.+..|-
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~~~~~~ 433 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIETGRLPE 433 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT-HHH
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHcCCchH
Confidence 245556666777999999999988764443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.13 Score=41.03 Aligned_cols=85 Identities=7% Similarity=-0.052 Sum_probs=53.4
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc---CCCHHHHHHHHHHHHhcCChH
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR---EKNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 302 (482)
-+...|++++|+.+|..+...+ +.+..-+..|..++-..+++++|...|.... ..|..++-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3445677777777777766655 4455556666666666677777776665432 234445555666666667777
Q ss_pred HHHHHHHHHHh
Q 011587 303 EAIRLLDSMRD 313 (482)
Q Consensus 303 ~a~~~~~~m~~ 313 (482)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77776666655
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.29 Score=44.83 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCC-CCCH
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE---------KNVLTWTAMATGMAIHGKGNEAIRLLDSMR----DCGV-KPNA 320 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~-~p~~ 320 (482)
..|..|.+.|.-.|+++.|+..-+.-.+ ..-.++..+..++.-.|+++.|.+.|+.-. +.|- ...+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566777777788888888776543321 133567778888888899999988887653 2222 2344
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHh---c-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSK---W-GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
.+..+|...|.-..++++|+.++.+-..- . ...-....+-+|..+|...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55666777777778888888877764431 0 1112355777888888888888888766543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.01 E-value=4.3 Score=40.59 Aligned_cols=300 Identities=11% Similarity=0.034 Sum_probs=178.7
Q ss_pred hCCCCchhHHH-----HHHHHHHhCCChhHHHHHhccCCCCC---chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc
Q 011587 138 RGFMFNVLVAT-----TLIHFYASNKDISSGKKVFDQMPMRS---SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209 (482)
Q Consensus 138 ~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~ 209 (482)
-|++.+..-|. .+++-+...+.+..|.++-..+..|. ...|.....-+.+... ..+.+-+..+-+++.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d--~~d~~vld~I~~kls-- 501 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSD--KMDEEVLDKIDEKLS-- 501 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccC--ccchHHHHHHHHHhc--
Confidence 46777766664 45667778899999999988887664 4556666666666331 223333333333332
Q ss_pred cCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC-CC-CCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-C--
Q 011587 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY-MP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-N-- 284 (482)
Q Consensus 210 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-- 284 (482)
... -...+|..+.+-....|+.+.|..+++.=...+. .| -.+..-+...+.-..+.||.+....++-.+.+. +
T Consensus 502 -~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s 579 (829)
T KOG2280|consen 502 -AKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS 579 (829)
T ss_pred -ccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 222 3445677777777788999998888764222111 00 002223345566667778877777776666531 1
Q ss_pred ------------HHHHHHHHH--------HHHhcCChHHHHHHHH--HHHhC-CCCCCHHHHHHHHHHHhccCc------
Q 011587 285 ------------VLTWTAMAT--------GMAIHGKGNEAIRLLD--SMRDC-GVKPNAVTFTSLFAACCHAGL------ 335 (482)
Q Consensus 285 ------------~~~~~~li~--------~~~~~~~~~~a~~~~~--~m~~~-g~~p~~~~~~~ll~~~~~~~~------ 335 (482)
...|.-++. .+.+.++-.++..-|. ..... -+.+-.........+|++...
T Consensus 580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHH
Confidence 112222221 1111222222222221 10000 011111222333344444332
Q ss_pred ----HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 011587 336 ----VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411 (482)
Q Consensus 336 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 411 (482)
..+-.++.+.+..++|......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 233445555566656665666677777788889999999999999987 478889988899999999998877766
Q ss_pred HHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.. .++.-|.-...+|.+.|+.++|.+++-+..
T Consensus 739 ksk-------------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 739 KSK-------------KSPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hcc-------------CCCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 532 225667789999999999999999887654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.94 E-value=2.7 Score=41.03 Aligned_cols=161 Identities=16% Similarity=0.019 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH-----HHHHHHHHHhhc----cCchHHHHHHHHHHHHhCC
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD-----TTMVCVLSVSSQ----LGLLEFGACVHGYMEKTFY 248 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 248 (482)
...++....- .|+-+.+++.+.+.. +..++.-.. -.|+.++..++. ..+.+.+.+++..+.+.-
T Consensus 191 ~~kll~~vGF-----~gdR~~GL~~L~~~~-~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y- 263 (468)
T PF10300_consen 191 VLKLLSFVGF-----SGDRELGLRLLWEAS-KSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY- 263 (468)
T ss_pred HHHHHhhcCc-----CCcHHHHHHHHHHHh-ccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-
Confidence 3445555555 778888888887765 133333322 234444444433 346677888888888775
Q ss_pred CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 011587 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321 (482)
Q Consensus 249 ~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 321 (482)
|......---...+...|++++|++.|++.... ....+--+.-++....+|++|.+.|..+.+.. .-+..
T Consensus 264 --P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka 340 (468)
T PF10300_consen 264 --PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKA 340 (468)
T ss_pred --CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHH
Confidence 444444444556677788888888888875531 22334445556677788888888888887753 22344
Q ss_pred HHHHHHH-HHhccCcH-------HHHHHHHHHhHH
Q 011587 322 TFTSLFA-ACCHAGLV-------EEGLHLFDNMKS 348 (482)
Q Consensus 322 ~~~~ll~-~~~~~~~~-------~~a~~~~~~~~~ 348 (482)
+|..+.. ++...++. ++|.++|.+...
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4443433 23345655 677777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.42 Score=43.11 Aligned_cols=143 Identities=11% Similarity=0.078 Sum_probs=77.3
Q ss_pred hhhHHHHHHHhccC-c----chHHHHHHHHHHhcCCCCchHHHHHHHHHhc---CCCCCChHHHHHHhhcCC-------C
Q 011587 7 HRCFALLKLKAITT-P----SHIKQIHAQLITNALKSPPLYAQLIQLYCTK---KASPQSTKIVHFVFTHFD-------P 71 (482)
Q Consensus 7 ~~~~~~~l~~~~~~-~----~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~~~~~-------~ 71 (482)
..+++.+|... +. + .....+++.|.+.|+..+..++-+....... ...+.....|.++++.|. .
T Consensus 60 ~~~la~~l~~~-~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 60 RFILAALLDIS-FEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 44556666655 44 4 4457889999999999887666443333333 111123445666666665 3
Q ss_pred CChhhHHHHhcC------CCCccHHHHHHHHHHCCCCCCChhh-HHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCch
Q 011587 72 PNLFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFT-YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV 144 (482)
Q Consensus 72 ~~~~~~~~ll~~------~~~~~a~~~~~~m~~~~~~p~~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (482)
++-..+..++.. .-.+.+..+|+.+.+.|....|.-- ...++..+.... ......+.++++.+.+.|+++..
T Consensus 139 ~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~-~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 139 PEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD-QEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred ccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHcCCcccc
Confidence 344455555554 2234555666666666655534422 233333322222 32234566677777777766655
Q ss_pred hHHHHHH
Q 011587 145 LVATTLI 151 (482)
Q Consensus 145 ~~~~~l~ 151 (482)
..|..+.
T Consensus 218 ~~yp~lG 224 (297)
T PF13170_consen 218 MHYPTLG 224 (297)
T ss_pred ccccHHH
Confidence 5555433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.9 Score=37.60 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhccCchH---HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLE---FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAM 291 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 291 (482)
.++..++.++...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+.+.+.+.+|... ....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 45566667776666544 3444555554433 334555556666666677778887777777642 23444444
Q ss_pred HHHHH--hcCChHHHHHHHHHHHhCCCCCCH
Q 011587 292 ATGMA--IHGKGNEAIRLLDSMRDCGVKPNA 320 (482)
Q Consensus 292 i~~~~--~~~~~~~a~~~~~~m~~~g~~p~~ 320 (482)
+..+- .......+...++.+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44431 123345566666666554444444
|
It is also involved in sporulation []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.46 Score=43.62 Aligned_cols=87 Identities=14% Similarity=0.004 Sum_probs=49.3
Q ss_pred HHHHHcCCChHHHHHHHHhccC------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMRE------------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 322 (482)
.+.|.+.|++..|..-|++... .-..+++.+..+|.+.+++..|+..-++.+..+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4567888888888888777542 012344555555555555555555555555543 224444
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
...=..+|...|+++.|+..|+++.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44444555555555555555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.4 Score=36.27 Aligned_cols=203 Identities=9% Similarity=0.043 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC---CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHH
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMP---MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~ 220 (482)
...|..-..+|-...++++|...+.+.. +.+...|.+ ...++.|.-+.++|. ...--..-|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA------------AKayEqaamLake~~----klsEvvdl~ 94 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA------------AKAYEQAAMLAKELS----KLSEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH------------HHHHHHHHHHHHHHH----HhHHHHHHH
Confidence 3456666677777888888887766543 122222221 222334444555543 111112234
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC------C---CHHHHHHH
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------K---NVLTWTAM 291 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~---~~~~~~~l 291 (482)
.-....|...|.++.|-..+++.-+.- +.-+.++|+++|.+... . -...+...
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~l------------------env~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKAL------------------ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHh------------------hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 445566667777666666655543321 12234444444443321 1 11234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh--cCCCcCHHHHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDC----GVKPNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSK--WGVEPHIKHYSCIVD 364 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~ 364 (482)
-..+.+..++++|-..|.+-... .--|+. ..|...|-.+....++..|..+++.-.+- +.-+-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 55666777777766655543211 111222 23555555666777888888888884432 233445677788888
Q ss_pred HHhccCCHHHHHHHHHc
Q 011587 365 LLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~ 381 (482)
+|- .|+.+++.+++..
T Consensus 237 ayd-~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 237 AYD-EGDIEEIKKVLSS 252 (308)
T ss_pred Hhc-cCCHHHHHHHHcC
Confidence 775 4788887776543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.87 Score=35.58 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=26.7
Q ss_pred HHHHHcCCChHHHHHHHHhccCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 261 VDMYSKCGCLDNALLIFSRMREK------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
.....+.|++++|.+.|+.+... ...+.-.++.+|.+.+++++|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33344455555555555555431 2233444555555555555555555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.6 Score=36.12 Aligned_cols=204 Identities=12% Similarity=0.044 Sum_probs=105.1
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC--HHHHHHHHHHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN--VLTWTAMATGMA 296 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~ 296 (482)
.|.....+|...++++++..-+.+..+.. +.+...|.+ ...++.|..+.+++.+-+ +..|+.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y---EnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY---ENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH---HhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555667777788888877766665433 223332222 223455555666555432 234556666777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----CCcCHHHHHHHHHHHhccCCH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG----VEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~ 372 (482)
..|.++-|-..+++.-+. ....++++|.++|++...-.. ...-...+...-..+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777666666654321 112334444444444333100 011122344445566666777
Q ss_pred HHHHHHHHcC-C------CCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 373 EEAYNFIMGI-P------IKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 373 ~~A~~~~~~~-~------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
++|-..+.+- + --|+. ..|-..|-.+....|+..|++.++.-.+.+.--+ .-+..+...|+.+|- .|
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~----sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK----SEDSRSLENLLTAYD-EG 241 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC----hHHHHHHHHHHHHhc-cC
Confidence 7665544433 1 11221 2234444455566788888888877554322100 134556666666653 45
Q ss_pred CchHHHHHH
Q 011587 445 RWPDVESVR 453 (482)
Q Consensus 445 ~~~~a~~~~ 453 (482)
+.+++.+++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 666666543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.8 Score=34.15 Aligned_cols=87 Identities=14% Similarity=-0.032 Sum_probs=52.3
Q ss_pred hHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhc
Q 011587 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187 (482)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 187 (482)
....++..+...+ . ......+++.+...+ ..+...++.++..|++.+ ..+..+.++. ..+.......++.|.+
T Consensus 9 ~~~~vv~~~~~~~-~--~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRN-L--LEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCC-c--HHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHH
Confidence 3445666666555 6 777777888777765 356667778888877653 2344444442 1233334445566655
Q ss_pred CCcccccchHHHHHHHHHh
Q 011587 188 QSKKAKDCAFNALVLFRDM 206 (482)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~m 206 (482)
.+.++++.-++.++
T Consensus 82 -----~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 -----AKLYEEAVELYKKD 95 (140)
T ss_pred -----cCcHHHHHHHHHhh
Confidence 66666666666655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.2 Score=41.09 Aligned_cols=153 Identities=7% Similarity=-0.065 Sum_probs=93.2
Q ss_pred CCCccHHHHHH--HHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 84 TPPQDSVLVFA--YWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 84 ~~~~~a~~~~~--~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
++++.+.+..+ .+.. .+ ...-.+.+++.+-+.| . .+.|+++. .|+. .-.+...+.|+++
T Consensus 275 ~d~~~v~~~i~~~~ll~-~i---~~~~~~~i~~fL~~~G-~--~e~AL~~~---------~D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLP-NI---PKDQGQSIARFLEKKG-Y--PELALQFV---------TDPD---HRFELALQLGNLD 335 (443)
T ss_dssp T-HHH-----HHHHTGG-G-----HHHHHHHHHHHHHTT----HHHHHHHS---------S-HH---HHHHHHHHCT-HH
T ss_pred CChhhhhhhhhhhhhcc-cC---ChhHHHHHHHHHHHCC-C--HHHHHhhc---------CChH---HHhHHHHhcCCHH
Confidence 66666555543 1111 01 2334666666666666 6 77777652 2332 3455666788888
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHH
Q 011587 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241 (482)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 241 (482)
.|.++.++.. +...|..|...... +|+++-|.+.|++.. -+..|+-.|...|+.+...++.+
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~-----~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALR-----QGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHH-----TTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHH-----cCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHH
Confidence 8888887776 66788888888888 888888988888875 35666667777888887777777
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
.....|. ++....++.-.|++++..+++.+..
T Consensus 398 ~a~~~~~--------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 398 IAEERGD--------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHTT---------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHccC--------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 7766662 2344445555677777777665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=1 Score=40.24 Aligned_cols=149 Identities=7% Similarity=-0.032 Sum_probs=86.2
Q ss_pred HcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHH--HHHHHHhccCcHH
Q 011587 265 SKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV--TFT--SLFAACCHAGLVE 337 (482)
Q Consensus 265 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~--~ll~~~~~~~~~~ 337 (482)
...|+..+|-..++++.+ .|..+++..=.+|...|+...-...+++.... ..|+.. +|. .+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666666776664 35666666667777777777777777776654 223332 222 2223344677777
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhcCCHhHHHHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP------DAILWRSLLSACNVHGDVALGEKVG 411 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~ 411 (482)
+|++.-++..+ -.+.|.-.-.++.+.+--.|++.++.+++.+-.-.- -...|-...-.+...+.++.|+.+|
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777776665 223444555666666667777777777776651110 1111222222344557777777777
Q ss_pred HHHHh
Q 011587 412 KILLQ 416 (482)
Q Consensus 412 ~~~~~ 416 (482)
+.-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 76443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.41 Score=41.63 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH-HHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVK--PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI-KHYSCIV 363 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li 363 (482)
.|+.-+..+ +.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.++-.|.. ..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444433 445566676666666655321 122334456666666677777777776666644333332 4555556
Q ss_pred HHHhccCCHHHHHHHHHcC
Q 011587 364 DLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~ 382 (482)
....+.|+.++|...|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6666666777776666665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.7 Score=33.30 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 353 (482)
...-+..+...|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-++ |++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 344556666777777777777776553 3556666667777777777777777777777764 553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=5.9 Score=39.40 Aligned_cols=299 Identities=12% Similarity=0.083 Sum_probs=148.6
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCC---ChhhHHHHHHHhhhccCcchhhhHHHHHH
Q 011587 57 QSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF---DDFTYVFALGSCARFCSLSTLWLGRQIHV 133 (482)
Q Consensus 57 ~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 133 (482)
|++++|++++-.+.++|... ..-+..|++-+..++++. -|.... -...++.+-..++... . +++|.+.+.
T Consensus 748 g~feeaek~yld~drrDLAi-elr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~-~--We~A~~yY~ 820 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLAI-ELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMM-E--WEEAAKYYS 820 (1189)
T ss_pred cchhHhhhhhhccchhhhhH-HHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHH-H--HHHHHHHHH
Confidence 88999999999998777532 112222555554444332 111110 1235666666777666 6 777777776
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCC
Q 011587 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213 (482)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 213 (482)
.... ...++.++.+..++++-+.+-+.+++ +....-.+...+.+ .|.-++|++.|-+..
T Consensus 821 ~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~s-----vGMC~qAV~a~Lr~s------ 879 (1189)
T KOG2041|consen 821 YCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTS-----VGMCDQAVEAYLRRS------ 879 (1189)
T ss_pred hccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHh-----hchHHHHHHHHHhcc------
Confidence 5432 12356666666777776666666654 33344556666777 777777777665543
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhH--------------HHHHHHHHHcCCChHHHHHHHHh
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI--------------GTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
.|. ..+..|...++|.+|.++-+... .| ...+ ..--|..+.+.|+.-+|-+++.+
T Consensus 880 ~pk-----aAv~tCv~LnQW~~avelaq~~~----l~--qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 880 LPK-----AAVHTCVELNQWGEAVELAQRFQ----LP--QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred CcH-----HHHHHHHHHHHHHHHHHHHHhcc----ch--hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 121 23455566666666655433211 00 1110 01234556666776667677766
Q ss_pred ccCCCH---HHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 280 MREKNV---LTWTAMATGM----AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 280 ~~~~~~---~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
|.+... ..|-.+=..| .-..+..++++-.++....|...++.. +...+-..++.++.+..-. |
T Consensus 949 mae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g- 1018 (1189)
T KOG2041|consen 949 MAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G- 1018 (1189)
T ss_pred HhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h-
Confidence 653211 1111111111 111233444444454445554322221 1222333344444443332 1
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCCHHHHHHHHHHHHhcCCHh
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
....+|-.|.+-....|..+.|++.--.+ .+-|-...|+.+.-+.+....+.
T Consensus 1019 -AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1019 -AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred -HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 12233334444445567777776543322 44566666665554444333333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.38 E-value=6.7 Score=41.57 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCCHHHHHHHH----HHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHH--
Q 011587 317 KPNAVTFTSLF----AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL-- 390 (482)
Q Consensus 317 ~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~-- 390 (482)
.|+...+..+. ..+...+.+++|.-.|+..-+- .--+.+|..+|+|.+|+.+..++....+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEGKDELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHH
Confidence 45555554444 4444566777777776665441 2246788889999999999988854444433
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
-..|+.-+...++.-+|-++..+....-. -.+..|++...|++|.++-..
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd~~---------------~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSDPE---------------EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcCHH---------------HHHHHHhhHhHHHHHHHHHHh
Confidence 25677778888888888888776654221 223344555566666655433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.34 Score=36.77 Aligned_cols=88 Identities=17% Similarity=0.072 Sum_probs=63.7
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCCHH---HHHHHHHHHHhc
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPDAI---LWRSLLSACNVH 401 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~~~l~~~~~~~ 401 (482)
+.+..|+.+.|++.|.+... -.+.....||.-..++.-.|+.++|++-+++. |-+ +.. .|..=...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 45677888888888888877 45567778888888888888888888777766 322 222 232233346677
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 011587 402 GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~ 419 (482)
|+-+.|..-|+.+-++|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888888888887
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.53 Score=35.79 Aligned_cols=89 Identities=17% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHH---HHHHHHHHHhc
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK---HYSCIVDLLGR 368 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 368 (482)
.-+.+..|+.+.|++.|.+.... .+-....||.-.+++.-.|+.++|.+-+++..+-.|-. +.. .|..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 34678899999999999998886 34478899999999999999999999999998853433 322 33334456778
Q ss_pred cCCHHHHHHHHHcC
Q 011587 369 AGHLEEAYNFIMGI 382 (482)
Q Consensus 369 ~g~~~~A~~~~~~~ 382 (482)
.|+.+.|..-|+..
T Consensus 128 ~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 128 LGNDDAARADFEAA 141 (175)
T ss_pred hCchHHHHHhHHHH
Confidence 89999998888766
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.3 Score=35.37 Aligned_cols=219 Identities=18% Similarity=0.085 Sum_probs=156.4
Q ss_pred chHHHHHHHHHhhhccCCCC-cCHHHHHHHHHHhhccCchHHHHHHHHHHHHh-CCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 195 CAFNALVLFRDMLVDVSGVK-PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-FYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 195 ~~~~a~~~~~~m~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
....+...+.... ..... .....+......+...+....+...+...... .. ......+......+...+++..
T Consensus 38 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 38 ELAEALELLEEAL--ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL--PNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred hHHHHHHHHHHHH--hcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc--cchHHHHHHHHHHHHHHhhHHH
Confidence 3444555555543 21111 13567777788888889999888888887763 22 5567777888888888999999
Q ss_pred HHHHHHhccC--CCH-HHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 273 ALLIFSRMRE--KNV-LTWTAMAT-GMAIHGKGNEAIRLLDSMRDCGV--KPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 273 A~~~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
+...+..... ++. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999998875 222 23333333 78899999999999999865321 123344444455567789999999999999
Q ss_pred HHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 347 KSKWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 347 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.. ..+. ....+..+...+...++.+.|...+... ...|+ ...+..+...+...+..+.+...+.+.....+
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 98 3344 4678888889999999999999998887 44554 44555555555577789999999999999887
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.3 Score=33.49 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (482)
..++..+...+.+.....+++.+...+. .+...++.++..|++.+. .+....+.. . .+.......+..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~-----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--K-----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence 4456666666777777777777776653 466677777777776533 333333331 1 122233445666677
Q ss_pred cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH-GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 369 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
.+.++++.-++.++|.. ...+..+... ++++.|.+.+.+ . .++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~--------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----Q--------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----C--------CCHHHHHHHHHHHHc
Confidence 77777777777777532 1122223333 677777776663 1 244566666655543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.31 Score=43.06 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh-----cCCc
Q 011587 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV-----KRVE 462 (482)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~ 462 (482)
..++..++..+...|+++.+...+++.....| -+...|..++.+|.+.|+...|+..++++.+ .|+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 34556677778888888888888888888888 7888888888888888888888888887763 5666
Q ss_pred cCCc
Q 011587 463 TEPG 466 (482)
Q Consensus 463 ~~~~ 466 (482)
|.+.
T Consensus 225 P~~~ 228 (280)
T COG3629 225 PAPE 228 (280)
T ss_pred ccHH
Confidence 5553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.95 E-value=4.3 Score=38.73 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCC-C-CCC--HHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP-I-KPD--AILWRSLLS 396 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~ 396 (482)
..=..+..++-+.|+.++|.+.+.++.+.+...-+......|+.++...+...++..++.+.. + -|. ...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 333446666667888888888888887742222244566778888888888888888887762 2 132 344555443
Q ss_pred HHHhcCC---------------HhHHHHHHHHHHhcCCC
Q 011587 397 ACNVHGD---------------VALGEKVGKILLQLQPE 420 (482)
Q Consensus 397 ~~~~~g~---------------~~~a~~~~~~~~~~~~~ 420 (482)
.+...++ -..|.+.++++.+.+|.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3222222 12356778888888775
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.5 Score=34.23 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=28.8
Q ss_pred hccCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 367 GRAGHLEEAYNFIMGI----PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.|++++|.+.|+.+ +..| ....--.++.+|.+.+++++|...+++.++++|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3445666666666555 1111 223334455566666666666666666666666
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.90 E-value=3.3 Score=41.98 Aligned_cols=183 Identities=11% Similarity=0.025 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 296 (482)
..+...-++...+...++.|..+-+ ..+..+..-........+.+.+.|++++|...|-+...--..+ .+|.-|.
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi~kfL 408 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVIKKFL 408 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHHHHhc
Confidence 3445566677777777777666543 3333112223344555666778899999988887765422112 2455566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (482)
...+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+...+ |.. ..-....+..+.+.+-.++|.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHH
Confidence 667778888888999988876 555566799999999999888777666653 322 112345567777888888888
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 377 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
.+-.+.+. +......+ +-..+++++|.+.++.+
T Consensus 484 ~LA~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 87777653 33333333 34578899999888743
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=4.2 Score=35.24 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.+-|.+.|.+..|..-++++++.-++ ..-....+-.+.++|.+.|-.++|.+.-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345677888888888888888887551 11223445566778888888888877654443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.41 E-value=6.4 Score=36.75 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 386 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
....+|..+.+.+.+.|.++.|...+.++...++... ...+.....-++.+...|+.++|...+++.....+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~----~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE----SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc----CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3556788888999999999999999999888664210 02456666778888899999999999888876333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.4 Score=38.54 Aligned_cols=125 Identities=12% Similarity=0.036 Sum_probs=56.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCcCHHHHHH-
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCG-----VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEPHIKHYSC- 361 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~- 361 (482)
+..++.-.+.++++++.|+....-- .......|..|-..|.+..|.++|.-+..+..+- .++.--...|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4445555555666666666543210 1112234555666666666666655444433321 121111112221
Q ss_pred ----HHHHHhccCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 362 ----IVDLLGRAGHLEEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 362 ----li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
+.-++...|++-.|.+..++. |-++ .......+...|...|+.+.|..-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222344444444444443332 3222 22233444555666666666666555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.031 Score=44.49 Aligned_cols=86 Identities=8% Similarity=-0.087 Sum_probs=64.3
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCc
Q 011587 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190 (482)
Q Consensus 111 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 190 (482)
.++..+.+.+ . +.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+
T Consensus 12 ~vi~~~~~~~-~--~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~--- 82 (143)
T PF00637_consen 12 EVISAFEERN-Q--PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEK--- 82 (143)
T ss_dssp CCHHHCTTTT----GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHT---
T ss_pred HHHHHHHhCC-C--HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHh---
Confidence 3566677666 6 888889999999876566788899999999999998999999985433 333456666777
Q ss_pred ccccchHHHHHHHHHhh
Q 011587 191 KAKDCAFNALVLFRDML 207 (482)
Q Consensus 191 ~~~~~~~~a~~~~~~m~ 207 (482)
.+.++++.-+|.++.
T Consensus 83 --~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 83 --HGLYEEAVYLYSKLG 97 (143)
T ss_dssp --TTSHHHHHHHHHCCT
T ss_pred --cchHHHHHHHHHHcc
Confidence 777888888877764
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.98 E-value=2.1 Score=43.26 Aligned_cols=181 Identities=12% Similarity=0.019 Sum_probs=111.8
Q ss_pred cCHHHHHHHHH----HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHH
Q 011587 215 PTDTTMVCVLS----VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLT 287 (482)
Q Consensus 215 p~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 287 (482)
.|..+...++. -+.+.|++++|..-|-+-...- + . .-++.-|....++..-..+++.+.+ .+...
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l---e-~----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh 433 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL---E-P----SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDH 433 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC---C-h----HHHHHHhcCHHHHHHHHHHHHHHHHcccccchh
Confidence 34444444444 4457899998887665543322 1 2 2355566666666666777777765 35556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (482)
-..|+.+|.+.++.++..++.+.-. .|.. ..-....+..+.+.+-.++|..+-..... +..... -.+-
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~---ille 501 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK------HEWVLD---ILLE 501 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc------CHHHHH---HHHH
Confidence 6789999999999999988887765 3322 11244566777777777887776444333 232333 3345
Q ss_pred ccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
..+++++|++.++.+++.--..+.+...+-+.. ...++-..++-+...
T Consensus 502 ~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 502 DLHNYEEALRYISSLPISELLRTLNKYGKILLE-HDPEETMKILIELIT 549 (933)
T ss_pred HhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHh
Confidence 678999999999999644344444444444444 345555555544443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.3 Score=39.68 Aligned_cols=163 Identities=13% Similarity=0.042 Sum_probs=121.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHH----HHHHHHhccCCH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS----CIVDLLGRAGHL 372 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~ 372 (482)
-.|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...++...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468899999999999887 455778888888899999999999999998887 3445543333 334455689999
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (482)
++|++.-++. .+.| |...-.++...+-..|+.+++.++..+-...-... --.-...|....-.+...+.++.|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999887 5555 67777888888889999999998887654432210 0022455667777788889999999
Q ss_pred HHHHHhHhcCCccCCc
Q 011587 451 SVRKQMKVKRVETEPG 466 (482)
Q Consensus 451 ~~~~~m~~~~~~~~~~ 466 (482)
++|+.=.-+.+..+.+
T Consensus 268 eIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHhhccch
Confidence 9998766555555555
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.96 E-value=6.3 Score=34.97 Aligned_cols=170 Identities=14% Similarity=0.060 Sum_probs=106.2
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 272 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
...+++++...+....--.-.......|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+..+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 4455555555442222222233456788899999988888776433 3455566888888999999999999887763 1
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
-.........-|..+.+.....+...+-++..-.| |...--.+...+...|+.+.|.+.+=.+++.+.. ..|.
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~------~~d~ 272 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG------FEDG 272 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------ccCc
Confidence 11112222233444445444444444444443345 6666677778888899999998877777765441 1566
Q ss_pred hhHHHHHHHHHhCCCchHH
Q 011587 431 EDFVALSNIYASAERWPDV 449 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a 449 (482)
..-..++..+.-.|.-+.+
T Consensus 273 ~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 273 EARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHHHHhcCCCCHH
Confidence 7777888888877755443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.82 E-value=2.4 Score=38.32 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=83.1
Q ss_pred hhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh--C----CChhHHHHHhccCCC-------
Q 011587 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS--N----KDISSGKKVFDQMPM------- 172 (482)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~------- 172 (482)
..++.+++..-.... ...+++...+++.+.+.|+.-+..+|-+..-.... . ....+|..+|+.|.+
T Consensus 60 ~~~la~~l~~~~~~p-~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 60 RFILAALLDISFEDP-EEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 334444444433312 23366677888888888887777666553333322 1 234567788888874
Q ss_pred CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHH--HHHHHHHHhhccCc--hHHHHHHHHHHHHhCC
Q 011587 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT--TMVCVLSVSSQLGL--LEFGACVHGYMEKTFY 248 (482)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 248 (482)
++-.++..++..-.. ......+.+..+|+.+. ..|+..+.. ..+.++..+..... ...+..+++.+.+.|+
T Consensus 139 ~~D~~~a~lLA~~~~---~~e~l~~~~E~~Y~~L~--~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 139 PEDYPFAALLAMTSE---DVEELAERMEQCYQKLA--DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred ccchhHHHHHhcccc---cHHHHHHHHHHHHHHHH--HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 234455555433111 11334567778888887 667766433 44444444433333 3467788888888887
Q ss_pred CCCCchhHHHHHHH
Q 011587 249 MPENDVFIGTALVD 262 (482)
Q Consensus 249 ~p~~~~~~~~~li~ 262 (482)
......|..+.-
T Consensus 214 --kik~~~yp~lGl 225 (297)
T PF13170_consen 214 --KIKYMHYPTLGL 225 (297)
T ss_pred --ccccccccHHHH
Confidence 445555554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.38 Score=28.93 Aligned_cols=39 Identities=13% Similarity=-0.039 Sum_probs=23.3
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 260 (482)
++..+...+...|++++|+++++++++.. |.+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~---P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD---PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCCHHHHHHh
Confidence 44555666666666666666666666665 4455544443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.77 E-value=4.5 Score=32.82 Aligned_cols=133 Identities=9% Similarity=0.026 Sum_probs=65.9
Q ss_pred HHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC--CChhHHHHHh
Q 011587 90 VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN--KDISSGKKVF 167 (482)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~ 167 (482)
.++.+.+.+.++.| +...+..++..+.+.+ . +. .+.+++..++-+|.......+-.+... .-..-|.+++
T Consensus 14 lEYirSl~~~~i~~-~~~L~~lli~lLi~~~-~--~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNIPV-QHELYELLIDLLIRNG-Q--FS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC-C--HH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHH
Confidence 34555566667766 7777777777777776 5 33 344444555444443333222222111 0123344444
Q ss_pred ccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 011587 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245 (482)
Q Consensus 168 ~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 245 (482)
.++. ..+..++..+.. .|++-+|+++.+... . .+......++.+..+.++...-..+++....
T Consensus 86 kRL~----~~~~~iievLL~-----~g~vl~ALr~ar~~~--~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 86 KRLG----TAYEEIIEVLLS-----KGQVLEALRYARQYH--K----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHhh----hhHHHHHHHHHh-----CCCHHHHHHHHHHcC--C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4433 234445556666 777777777776642 1 1111123345555555555444444444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.3 Score=40.11 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=45.2
Q ss_pred HhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 366 LGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
+...|+++.+...+... -+.....+...+++...+.|++++|....+.|+.... -+++....-.-.-...
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei--------e~~ei~~iaa~sa~~l 404 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI--------EDEEVLTVAAGSADAL 404 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc--------CChhheeeecccHHHH
Confidence 34455555555555444 1222344455555555555555555555555554444 2233322222223334
Q ss_pred CCchHHHHHHHHhHhcCCccCCcccEEE
Q 011587 444 ERWPDVESVRKQMKVKRVETEPGSSILQ 471 (482)
Q Consensus 444 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 471 (482)
|-++++...|+++...+.+.+.++-..+
T Consensus 405 ~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred hHHHHHHHHHHHHhccCChhcccceeee
Confidence 4555555555555544444444433333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.1 Score=36.03 Aligned_cols=51 Identities=14% Similarity=-0.091 Sum_probs=22.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
..|.++.+..-.+.+...+. +.....-.+|.-+-.+.|++.+|.++|..+.
T Consensus 144 D~gsy~dV~srvepLa~d~n--~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGN--PMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccccHHHHHHHhhhccCCCC--hhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 34444444444444433333 3333334444444445555555555554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.96 Score=40.03 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
.++..++..+...|+.+.+.+.+++. ...| +...|..++.+|.+.|+...|+..|+.+.+... +..|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~--edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA--EELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh--hhcCCCccHHHHH
Confidence 47788889999999999999988888 5556 888999999999999999999999999887522 3455568777777
Q ss_pred HHHHH
Q 011587 435 ALSNI 439 (482)
Q Consensus 435 ~l~~~ 439 (482)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66666
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=2 Score=40.72 Aligned_cols=178 Identities=13% Similarity=0.066 Sum_probs=109.7
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHhc---------cCcHHHHHHHHHHhH
Q 011587 286 LTW--TAMATGMAIHG-----KGNEAIRLLDSMRD-CGVKPN-AVTFTSLFAACCH---------AGLVEEGLHLFDNMK 347 (482)
Q Consensus 286 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 347 (482)
..| ...+.+..... ..+.|..+|.+... ....|+ ...|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555544322 35678888988872 223444 3445444443322 334556677777776
Q ss_pred HhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccc
Q 011587 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 425 (482)
+ --+-|......+..+..-.++++.|..+|++. .+.|| ..+|-.....+.-.|+.++|.+.+++.+++.|.
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~----- 404 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR----- 404 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch-----
Confidence 6 33456777777777778888899999999988 56674 344544455566779999999999999999882
Q ss_pred ccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeCCeeec
Q 011587 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478 (482)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 478 (482)
+.-.......++.|+.. ..++|.+++-+- .+.....+.|.+.+++
T Consensus 405 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 449 (458)
T PRK11906 405 -RRKAVVIKECVDMYVPN-PLKNNIKLYYKE------TESESHRVIIDNILKL 449 (458)
T ss_pred -hhHHHHHHHHHHHHcCC-chhhhHHHHhhc------cccccchhhHHHHHHH
Confidence 22333444455566665 457777776432 2233444555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=6.4 Score=33.50 Aligned_cols=218 Identities=19% Similarity=0.136 Sum_probs=157.0
Q ss_pred cCchHHHHHHHHHHHHhCCCCC-CchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHHHHHHHHHHHhcCChHH
Q 011587 230 LGLLEFGACVHGYMEKTFYMPE-NDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLTWTAMATGMAIHGKGNE 303 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~ 303 (482)
.+....+...+........ . ............+...+++..+...+..... .....+......+...+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLP--NSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCc--cccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 3445555555555555442 1 1356778888899999999999988887652 355667777778888888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCC--CcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 304 AIRLLDSMRDCGVKPNAVTFTSLFA-ACCHAGLVEEGLHLFDNMKSKWGV--EPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 304 a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
+...+.........+. ........ .+...|+++.+...+.+.... .- ......+......+...++.+.+...+.
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 114 ALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 9999999887654432 22222333 788999999999999998552 21 1234445555555778899999999998
Q ss_pred cC-CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 381 GI-PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 381 ~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+. ...++ ...+..+...+...++++.+...+.......+ .....+..+...+...+.++++...+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP--------DNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--------ccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 87 43444 67788888888999999999999999999887 445556666666667778899988887766
Q ss_pred hc
Q 011587 458 VK 459 (482)
Q Consensus 458 ~~ 459 (482)
..
T Consensus 264 ~~ 265 (291)
T COG0457 264 EL 265 (291)
T ss_pred Hh
Confidence 44
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.23 E-value=7.9 Score=34.37 Aligned_cols=142 Identities=10% Similarity=-0.044 Sum_probs=89.4
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-CH---HHHHHHHHHHHhcC
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NV---LTWTAMATGMAIHG 299 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~~ 299 (482)
.......|+..++..+++...... +.+...-..+...|...|+.+.|..++..+... .. .....-|..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 344567889999999999988877 556677788899999999999999999998742 11 12222334444444
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
...+...+-++.-.. +-|...-..+...+...|+.+.|.+.+-.+.++..---|...-..+++.+.-.|
T Consensus 218 ~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444444332 125555556677777788888887766665554222234445555555555444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.70 E-value=13 Score=35.73 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=108.2
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTA 290 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 290 (482)
..|.....+++..+.....+.-++.+..+|+..|- +-..+..++..|... .-+.-..+|+++.+ .|++.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e----~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE----SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHH
Confidence 45777777888888888888888888888887764 566677777777777 45566667776654 23333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC--CC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVK--PN---AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
|..-|- .++.+++..+|.+....=++ .+ ...|..+.... ..+.+....+...+.+..|...-...+.-+-.-
T Consensus 138 La~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 444443 37777777777776554221 01 12344444322 346666677777766665555555666666667
Q ss_pred HhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHH
Q 011587 366 LGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSAC 398 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 398 (482)
|....++++|++++..+ .-..|...-..++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 77777777777777755 2233444444454443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=12 Score=35.63 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=104.3
Q ss_pred hHH--HHHHHHHHcCC-----ChHHHHHHHHhcc---CCC---HHHHHHHHHHHHhc---------CChHHHHHHHHHHH
Q 011587 255 FIG--TALVDMYSKCG-----CLDNALLIFSRMR---EKN---VLTWTAMATGMAIH---------GKGNEAIRLLDSMR 312 (482)
Q Consensus 255 ~~~--~~li~~~~~~g-----~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~ 312 (482)
..| ..++.+..... +.+.|..+|.+.. +-| ...|..+..++... ....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 45555544422 4578899999988 433 45565555544322 23557777888888
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHc-CCCCCCHH-
Q 011587 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMG-IPIKPDAI- 389 (482)
Q Consensus 313 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~- 389 (482)
+.+. -|......+..+....++++.|...|++...- .|| ...|........-.|+.++|.+.+++ +...|...
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 8763 37788777777778888899999999999872 444 44555555556678999999999998 46677543
Q ss_pred --HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 390 --LWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 390 --~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.....+..|+. ...+.|.+++-+-.+
T Consensus 408 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 408 AVVIKECVDMYVP-NPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHHcC-CchhhhHHHHhhccc
Confidence 33333445554 467888888765433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.6 Score=26.00 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+|..+...+...|++++|...|+++++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4677888899999999999999999999887
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.33 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=22.4
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 011587 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274 (482)
Q Consensus 240 ~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~ 274 (482)
|++.++.. |.+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~---P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN---PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC---CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 667777888888888888877775
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.51 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
+|..|...|.+.|++++|..++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999998554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.099 Score=41.60 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=64.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... + .-...+++.+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhcc
Confidence 345555556666666666666655544456666666666666655555555544111 1 12233455555666
Q ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 371 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
.+++|.-++.++|...... ..+...++++.|.+.+. -.+++..|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al------~i~~~~~~~~~a~e~~~-------------~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEAL------EILHKLKDYEEAIEYAK-------------KVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCS------STSSSTHCSCCCTTTGG-------------GCSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHH------HHHHHHccHHHHHHHHH-------------hcCcHHHHHHHHHHHHhcCc
Confidence 6666666666553211110 01223334444432211 12457777777777776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.2 Score=36.82 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH--IKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.+..+...|++.|+.+.|.+.|.++.+. ...+. ...+-.+|+.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555555555555555555555542 22222 223344445555555555554444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.99 E-value=15 Score=35.23 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIV 363 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li 363 (482)
-..+..+.-+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+..+. ..+.+ ..+|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHH
Confidence 345667777889999999999988764322 23446677888898999999999988887552 33222 34565544
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.62 Score=26.54 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.74 E-value=22 Score=36.70 Aligned_cols=222 Identities=11% Similarity=-0.004 Sum_probs=122.4
Q ss_pred hccCchHHHHHHHHHHHHhCCCC----CCc-hhHHHHHHH-HHHcCCChHHHHHHHHhccC--------CCHHHHHHHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMP----END-VFIGTALVD-MYSKCGCLDNALLIFSRMRE--------KNVLTWTAMAT 293 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p----~~~-~~~~~~li~-~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 293 (482)
....++++|..+..++...-..| ..+ ...++++-. .....|++++|.++-+...+ ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999988877654311 001 112333322 23456888999888877653 35677888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHhccCc--HHHHHHHHHHhHHhcCCCc-----CHHHHHH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF-----AACCHAGL--VEEGLHLFDNMKSKWGVEP-----HIKHYSC 361 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 361 (482)
+..-.|++++|..+.....+.--+-+...|..+. ..+..+|+ ..+.+..|......+.... -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999988765542222333332222 12344563 2333333443333211111 1234444
Q ss_pred HHHHHhccCCHHHHHHHHHc-------CCCCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchh
Q 011587 362 IVDLLGRAGHLEEAYNFIMG-------IPIKPDAILW--RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~-------~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
+..++.+ .+.+..-... -...|-.... ..|+......|+.+.|...+.++.....+.+ ++ ++..+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~--~~~~a 659 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YH--VDYLA 659 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CC--chHHH
Confidence 4555544 3333222211 1222322222 3677788889999999999999988665311 11 22222
Q ss_pred HHHHHH--HHHhCCCchHHHHHHHH
Q 011587 433 FVALSN--IYASAERWPDVESVRKQ 455 (482)
Q Consensus 433 ~~~l~~--~~~~~g~~~~a~~~~~~ 455 (482)
-...+. .....|+.+++.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 223333 33467888888777665
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.54 E-value=17 Score=35.00 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 011587 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275 (482)
Q Consensus 196 ~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~ 275 (482)
+.-...+..+|. . +--+...|..++.+|... ..+.-..+++++.+..+ .+...-.-|...|- .++.+.+..
T Consensus 82 ~~~veh~c~~~l--~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df---nDvv~~ReLa~~yE-kik~sk~a~ 152 (711)
T COG1747 82 NQIVEHLCTRVL--E--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF---NDVVIGRELADKYE-KIKKSKAAE 152 (711)
T ss_pred HHHHHHHHHHHH--H--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc---hhHHHHHHHHHHHH-HhchhhHHH
Confidence 344445555555 2 234566778888888877 56677888888888875 23333344444444 488899998
Q ss_pred HHHhccCC------CH---HHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 276 IFSRMREK------NV---LTWTAMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 276 ~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
+|.++... +. ..|..++..- ..+.+..+.+..+... .|..--...+.-+-.-|....++++|.+++..
T Consensus 153 ~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~ 230 (711)
T COG1747 153 FFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKH 230 (711)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 88887631 21 3677766532 4567888888877765 45555566777777889999999999999998
Q ss_pred hHHhcCCCcCHHHHHHHHHHHhc-cCCHHHHHHHHHcC
Q 011587 346 MKSKWGVEPHIKHYSCIVDLLGR-AGHLEEAYNFIMGI 382 (482)
Q Consensus 346 ~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 382 (482)
+.+ .-.-|...-..++.-+.. -......++.+..-
T Consensus 231 il~--~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s 266 (711)
T COG1747 231 ILE--HDEKDVWARKEIIENLRDKYRGHSQLEEYLKIS 266 (711)
T ss_pred Hhh--hcchhhhHHHHHHHHHHHHhccchhHHHHHHhc
Confidence 888 334455555666655432 23344444444444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.44 E-value=15 Score=34.22 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP---NAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
....+|..++..+.+.|.++.|...+..+...+... .......-.+.+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777788888888888888888776643211 223333344455566777888887777776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.37 E-value=1 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..|..+...+...|++++|.+.++++++..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3566788889999999999999999999887
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.25 E-value=8.7 Score=31.20 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
.+.++.+.+.+++|+...+..+++.+.+.|++.....++..-.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 3455556667788888888888888888887777666665433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.23 E-value=23 Score=36.01 Aligned_cols=143 Identities=11% Similarity=0.030 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHhCCCC---chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMF---NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
+++|....+... |..| .......+++.+.-.|++++|-...-.|...+..-|.-.+..+.. .++......
T Consensus 372 yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e-----~~~l~~Ia~ 444 (846)
T KOG2066|consen 372 YEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE-----LDQLTDIAP 444 (846)
T ss_pred HHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc-----ccccchhhc
Confidence 555555544332 2233 345667777878888888888877777777777777766666666 443332222
Q ss_pred HHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHH------------------HHHHhCCCCCCchhHHHHHHHH
Q 011587 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG------------------YMEKTFYMPENDVFIGTALVDM 263 (482)
Q Consensus 202 ~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~------------------~~~~~~~~p~~~~~~~~~li~~ 263 (482)
-+. ...-+.+...|..++..+.. .+...-.++.. +..+. ..+...-..|+..
T Consensus 445 ---~lP--t~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~----Se~~~L~e~La~L 514 (846)
T KOG2066|consen 445 ---YLP--TGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN----SESTALLEVLAHL 514 (846)
T ss_pred ---cCC--CCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh----ccchhHHHHHHHH
Confidence 221 11112344455555555544 21111111111 11111 2233444568899
Q ss_pred HHcCCChHHHHHHHHhccCCC
Q 011587 264 YSKCGCLDNALLIFSRMREKN 284 (482)
Q Consensus 264 ~~~~g~~~~A~~~~~~~~~~~ 284 (482)
|...+++..|...+-...+++
T Consensus 515 Yl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHHccChHHHHHHHHhccChH
Confidence 999999999999988877643
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.72 Score=41.30 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=61.2
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCH
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDV 404 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 404 (482)
..-|.++|.+++|++.|..... -.+-|.+++..-..+|.+..++..|+.-.... .+. .-+..|.--+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 3567788999999999888776 23337888888888899888888776655544 111 1223343334444445677
Q ss_pred hHHHHHHHHHHhcCC
Q 011587 405 ALGEKVGKILLQLQP 419 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~ 419 (482)
.+|.+-++.++++.|
T Consensus 182 ~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 182 MEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHhHHHHHhhCc
Confidence 777777787777776
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.01 E-value=5.5 Score=32.89 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=32.2
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc--CHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP--TDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 245 (482)
.+..+...|++ .|+.+.|++.|.++. +....+ -...+..+++...-.+++..+.....++..
T Consensus 38 ~~~~l~~~~~~-----~Gd~~~A~k~y~~~~--~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCK-----IGDLEEALKAYSRAR--DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHH-----hhhHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555 555555555555554 222222 233445555556666666666666555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.88 E-value=5.9 Score=28.68 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
..++|..|-+.+...+ .....+-.+-+..+...|+|++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3567777777776665 2234444444556778899999999998888888888877655 4667777777777777
Q ss_pred HhCCCCCCHHHH
Q 011587 312 RDCGVKPNAVTF 323 (482)
Q Consensus 312 ~~~g~~p~~~~~ 323 (482)
...| .|....|
T Consensus 95 a~sg-~p~lq~F 105 (115)
T TIGR02508 95 AASG-DPRLQTF 105 (115)
T ss_pred HhCC-CHHHHHH
Confidence 7776 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.78 E-value=45 Score=38.75 Aligned_cols=316 Identities=9% Similarity=0.020 Sum_probs=167.0
Q ss_pred HhhhccCcchhhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChhHHHHHhcc-CCCCCchhHHHHHHHHhcCCcc
Q 011587 115 SCARFCSLSTLWLGRQIHVHVTKRGF--MFNVLVATTLIHFYASNKDISSGKKVFDQ-MPMRSSATWNAMINGYCSQSKK 191 (482)
Q Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 191 (482)
+--+.+ . +.+|...++.-..... .-....|-.+...|+.-+++|....+... .. +...++.++ ....
T Consensus 1392 aSfrc~-~--y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a--~~sl~~qil-~~e~---- 1461 (2382)
T KOG0890|consen 1392 ASFRCK-A--YARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA--DPSLYQQIL-EHEA---- 1461 (2382)
T ss_pred HHHhhH-H--HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc--CccHHHHHH-HHHh----
Confidence 333444 5 8888888877411111 11234455566689999999888777763 32 333333333 4455
Q ss_pred cccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 192 AKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 192 ~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.|++..|...|+.+. +..|+ ..+++-++......+.++.+....+-...... +.....++.=+.+--+.+++
T Consensus 1462 -~g~~~da~~Cye~~~----q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 -SGNWADAAACYERLI----QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS--EEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred -hccHHHHHHHHHHhh----cCCCccccchhhHHHhhhcccchhHHHhhhcchhhccC--HHHHHHHHHHHHHHhhhcch
Confidence 899999999999987 55565 66788888877778887776664444333321 11222233334444677777
Q ss_pred HHHHHHHHhccCCCHHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHhccCcHH
Q 011587 271 DNALLIFSRMREKNVLTWTAM--ATGMAIHG--KGNEAIRLLDSMRDCGVKP---------NAVTFTSLFAACCHAGLVE 337 (482)
Q Consensus 271 ~~A~~~~~~~~~~~~~~~~~l--i~~~~~~~--~~~~a~~~~~~m~~~g~~p---------~~~~~~~ll~~~~~~~~~~ 337 (482)
+....... ..+..+|... .....+.. +.-.-.+.++.+++.-+.| =...|..++..+.-. +.+
T Consensus 1535 D~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~ 1610 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELE 1610 (2382)
T ss_pred hhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHH
Confidence 77776665 3344444443 22222222 2222223333333321111 012344444333211 111
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHH---HHhccCCHHHHH-H-HHHc-C--CCC-CCHHHHHHHHHHHHhcCCHhHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVD---LLGRAGHLEEAY-N-FIMG-I--PIK-PDAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~-~-~~~~-~--~~~-p~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
.-.+.+..........-+...|..-+. .+.+..++--|. + ++.. | +.+ --..+|-...+...+.|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111110000111112222221 122211111111 1 1111 1 111 23467888888888899999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
..+=.+.+.+. +..+.-.+..+...|+...|+.++++....+.
T Consensus 1691 nall~A~e~r~----------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL----------PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc----------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88887777766 45777888889999999999999998886555
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.44 E-value=14 Score=32.33 Aligned_cols=204 Identities=7% Similarity=0.011 Sum_probs=107.1
Q ss_pred cCCCCcCHHHHHHHHHHh-hccCchHHHHHHHHHHHHhCCCCCCchh---HHHHHHHHHHcCCChHHHHHHHHhccC---
Q 011587 210 VSGVKPTDTTMVCVLSVS-SQLGLLEFGACVHGYMEKTFYMPENDVF---IGTALVDMYSKCGCLDNALLIFSRMRE--- 282 (482)
Q Consensus 210 ~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~--- 282 (482)
+.+-.||...=+.--++- .+...+++|..-|++.++..- +.... ....++..+.+.|++++....|.++..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEg--EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk 96 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEG--EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK 96 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhccc--ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 344555554433322221 233456677777777665432 32332 334456777788888888777777652
Q ss_pred ------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 283 ------KNVLTWTAMATGMAIHGKGNEAIRLLDSMR----DC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 283 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
-+..+.|.++..-+...+.+-...+++.-. +. +-..--.|-..|...|...+.+.+..++++++.....
T Consensus 97 SAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq 176 (440)
T KOG1464|consen 97 SAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQ 176 (440)
T ss_pred HHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhc
Confidence 234456666665555555444444443221 11 1111122334566666777777777777777765211
Q ss_pred CC----------cCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCCHHHHHHHHHHH-----HhcCCHhHHHHHHH
Q 011587 352 VE----------PHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPDAILWRSLLSAC-----NVHGDVALGEKVGK 412 (482)
Q Consensus 352 ~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~ 412 (482)
-. .-...|..=|..|....+-.+...++++. .--|.+.... +|+-| .+.|.+++|..-|-
T Consensus 177 ~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 177 TEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred cccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHH
Confidence 10 11346666677777777766666666655 2224444333 23332 35667777765544
Q ss_pred HHHh
Q 011587 413 ILLQ 416 (482)
Q Consensus 413 ~~~~ 416 (482)
++.+
T Consensus 256 EAFK 259 (440)
T KOG1464|consen 256 EAFK 259 (440)
T ss_pred HHHh
Confidence 4443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.38 E-value=9.8 Score=30.52 Aligned_cols=51 Identities=12% Similarity=-0.052 Sum_probs=22.5
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
.+.++.+.++.++..+.-.. |.....-..-...+...|++.+|..+|+++.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34445555555555544443 2222222223333444455555555555544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.28 E-value=26 Score=35.64 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=15.7
Q ss_pred HhccCCHHHHHHHHHcCCCCC
Q 011587 366 LGRAGHLEEAYNFIMGIPIKP 386 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~p 386 (482)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999998888
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.05 E-value=2 Score=38.22 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=71.3
Q ss_pred HHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-CC--------ChhhHHHHhcCCCCccHHHHHHHHHHCC
Q 011587 30 QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-PP--------NLFLFNTLIRCTPPQDSVLVFAYWVSKG 100 (482)
Q Consensus 30 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~--------~~~~~~~ll~~~~~~~a~~~~~~m~~~~ 100 (482)
.-...|.+.+..+...++..-... ..++.+...+-.+. +| ...+|-.++..-++++++.++..=++.|
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~---~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYG 130 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSR---EEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYG 130 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccc---cchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhc
Confidence 334557777777777777777766 78888887766554 22 2233433443367778888888878888
Q ss_pred CCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhC
Q 011587 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139 (482)
Q Consensus 101 ~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (482)
+.| |.++++.+|..+.+.+ + ...|.++.-.|+...
T Consensus 131 iF~-dqf~~c~l~D~flk~~-n--~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 131 IFP-DQFTFCLLMDSFLKKE-N--YKDAASVVTEVMMQE 165 (418)
T ss_pred ccc-chhhHHHHHHHHHhcc-c--HHHHHHHHHHHHHHH
Confidence 888 8888888888888877 7 777777777776654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.91 E-value=6.5 Score=38.43 Aligned_cols=150 Identities=10% Similarity=-0.079 Sum_probs=98.6
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|+++.|..++..+. ...-+.+...+.+.+ - .++|+++ .+|+.. -.....+.|+++.|
T Consensus 600 rd~~~a~~vLp~I~--------k~~rt~va~Fle~~g-~--~e~AL~~---------s~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 600 RDLEVADGVLPTIP--------KEIRTKVAHFLESQG-M--KEQALEL---------STDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred ccccccccccccCc--------hhhhhhHHhHhhhcc-c--hHhhhhc---------CCChhh---hhhhhhhcCcHHHH
Confidence 66666655443332 123334444455555 4 5555543 333322 23445677899999
Q ss_pred HHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 011587 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243 (482)
Q Consensus 164 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 243 (482)
.++..+.. +..-|..|..+... .+++..|.+.|.+.+ -|..|+-.+...|+-+....+-...
T Consensus 657 ~~la~e~~--s~~Kw~~Lg~~al~-----~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 657 FDLAVEAN--SEVKWRQLGDAALS-----AGELPLASECFLRAR-----------DLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHhhc--chHHHHHHHHHHhh-----cccchhHHHHHHhhc-----------chhhhhhhhhhcCChhHHHHHHHHH
Confidence 88876543 67789999999999 899999999998875 3567777888888888777777777
Q ss_pred HHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC
Q 011587 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282 (482)
Q Consensus 244 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 282 (482)
.+.|. . |....+|...|+++++.+++.+-..
T Consensus 719 ~~~g~---~-----N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 719 KKQGK---N-----NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred Hhhcc---c-----chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 77763 2 2334466778888888888776543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=88.29 E-value=24 Score=33.55 Aligned_cols=203 Identities=11% Similarity=0.045 Sum_probs=109.9
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHH-------HHHHhh-cc---CchHHHHHHHHH
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC-------VLSVSS-QL---GLLEFGACVHGY 242 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~-------l~~~~~-~~---~~~~~a~~~~~~ 242 (482)
=+.++..++....+ .++..+|-+.+.-+. -..|+...-.- +-+..+ .- .+...-..+++.
T Consensus 297 li~~F~~~Ls~~Vk-----~~~T~~a~q~l~lL~----~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 297 LIDRFGNLLSFKVK-----QVQTEEAKQYLALLK----ILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHH-----HHhHHHHHHHHHHHH----hcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34567777777777 677777766666554 33343331111 111111 11 112222344455
Q ss_pred HHHhCCCCCCchhHHHHHHH---HHHcCCC-hHHHHHHHHhccC---CCHHHHHHHH----HHHHh---cCChHHHHHHH
Q 011587 243 MEKTFYMPENDVFIGTALVD---MYSKCGC-LDNALLIFSRMRE---KNVLTWTAMA----TGMAI---HGKGNEAIRLL 308 (482)
Q Consensus 243 ~~~~~~~p~~~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~a~~~~ 308 (482)
....++ . ....-..|+. -+-+.|. -++|+++++.+.+ .|..+-|.+. ..|.. ...+..-..+-
T Consensus 368 ~qs~Di--D-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 368 IQSYDI--D-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHhhcc--c-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 544443 1 1111222222 2334444 7778888887764 3443333322 22322 23345555555
Q ss_pred HHHHhCCCCCCHH----HHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 309 DSMRDCGVKPNAV----TFTSLFA--ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 309 ~~m~~~g~~p~~~----~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
+-..+.|++|-.. .-|.|.. .+...|++.++.-.-..+. .+.|++.+|..+.-+.....++++|++++...
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5666777776432 2333333 2345688888876655554 36788888888888888888889999988886
Q ss_pred CCCCCHHHHHH
Q 011587 383 PIKPDAILWRS 393 (482)
Q Consensus 383 ~~~p~~~~~~~ 393 (482)
+ |+..++++
T Consensus 522 P--~n~~~~ds 530 (549)
T PF07079_consen 522 P--PNERMRDS 530 (549)
T ss_pred C--CchhhHHH
Confidence 4 56666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.28 E-value=4.7 Score=29.30 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
-+..+-++.+......|++....+.+.+|.+.+++..|.++|+-++.+.|.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3556666666777778888888888888888888888888888888754433 226665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.12 E-value=4.4 Score=29.13 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++|+..+.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666677777777888888888888888888888888888877764332 3445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.67 E-value=30 Score=34.04 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=81.2
Q ss_pred ChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChh-hHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHH
Q 011587 73 NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDF-TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147 (482)
Q Consensus 73 ~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (482)
+...|..+|.. .+.+.+..++..++.. .| .-. -|-.....=.+.| . .+.+.++|++.+. |++.+...|
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yP-l~~gyW~kfA~~E~klg-~--~~~s~~Vfergv~-aip~SvdlW 116 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YP-LCYGYWKKFADYEYKLG-N--AENSVKVFERGVQ-AIPLSVDLW 116 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--Cc-cHHHHHHHHHHHHHHhh-h--HHHHHHHHHHHHH-hhhhHHHHH
Confidence 44557777776 3334555555556543 24 211 2222222223444 5 8899999999986 467777778
Q ss_pred HHHHHHHH-hCCChhHHHHHhccCCC------CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhh
Q 011587 148 TTLIHFYA-SNKDISSGKKVFDQMPM------RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207 (482)
Q Consensus 148 ~~l~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~ 207 (482)
..++..+. ..|+.+...+.|+.... .+...|...|.--.. ++++.....+|++..
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~-----qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG-----QKSWKRVANIYERIL 178 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc-----cccHHHHHHHHHHHH
Confidence 77776554 45777778888876652 266778888887777 899999999999987
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.58 E-value=9.9 Score=34.03 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (482)
+++++.++..=.. +|+-||..+++.+|+.+.+.++..+|.++.
T Consensus 116 pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vv 158 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVV 158 (418)
T ss_pred hHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHH
Confidence 3344444444444 344455555555555555544444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.6 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
..+++.|...|...|++++|+.+++++.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578888899999999999999999887643
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.98 E-value=4.4 Score=33.78 Aligned_cols=75 Identities=12% Similarity=-0.043 Sum_probs=53.9
Q ss_pred CCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh---CCCCchhHHHHHHHHHHhCCChh
Q 011587 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR---GFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
+-+.|++.|-.+...+..- ++.....+...|.+. + .+++.+++...++. +-.+|+..+.+|++.|.+.|+++
T Consensus 121 ~d~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~kr--D--~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELE-TAELQYALATYYTKR--D--PEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred CcHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHcc--C--HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 4567888888887776654 666666666666543 5 78888888887774 23567888888888888888887
Q ss_pred HHH
Q 011587 162 SGK 164 (482)
Q Consensus 162 ~A~ 164 (482)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.86 E-value=18 Score=30.64 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+||-+.--+...|+++.|.+.|+...+....-+-...|.-|.- .--|++.-|.+-+...-+...-.|-...|--+++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 467888888889999999999999999887654333333333332 3458888888776666653222333333333322
Q ss_pred HHhccCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 365 LLGRAGHLEEAYNF-IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 365 ~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
..-++.+|..- .++.. ..|..-|...|-.+. .|++.+ +.+++++..-..+-... ...-.+||..|.+-+...
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a~~n~~~-Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKISE-ETLMERLKADATDNTSL-AEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-HhhccH-HHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHhcc
Confidence 23356666544 44431 234444443333332 233221 23333333322100000 001256888999999999
Q ss_pred CCchHHHHHHHHhHhcC
Q 011587 444 ERWPDVESVRKQMKVKR 460 (482)
Q Consensus 444 g~~~~a~~~~~~m~~~~ 460 (482)
|+.++|..+|+-....+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999998665433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.83 E-value=18 Score=30.63 Aligned_cols=182 Identities=10% Similarity=-0.037 Sum_probs=105.6
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH-HHHHHHH--HHHhcCChHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL-TWTAMAT--GMAIHGKGNEA 304 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~~~~~~a 304 (482)
-..|-+..|.-=|.+.+... |.-+.+||-|.--+...|+++.|.+.|+...+-|.. -|..+=+ ++.-.|++.-|
T Consensus 76 DSlGL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 34455555555566666555 567788999999999999999999999999874432 2322222 23346888888
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc-cCCHHHHHHHHHcC
Q 011587 305 IRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR-AGHLEEAYNFIMGI 382 (482)
Q Consensus 305 ~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 382 (482)
.+=|-..-+.... |-...|-.+.. ..-++.+|..-+.+--+ | .+..-|...|-.|.- .=..+.+.+-...-
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~ 225 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKAD 225 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhh
Confidence 8877777655422 22223333332 23455555543333222 1 233444443333322 11222222222211
Q ss_pred CCC------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 PIK------PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 ~~~------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.-. .-..||--+.+-+...|+.++|..+|+-++..+.
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 100 1234677788888999999999999999988766
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.80 E-value=14 Score=29.23 Aligned_cols=52 Identities=10% Similarity=-0.139 Sum_probs=29.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 283 (482)
..++.++++.+++.|.-.. |.....-..-.-.+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr---P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR---PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC---CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665544 223333233334455666777777777766653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=32 Score=33.14 Aligned_cols=237 Identities=8% Similarity=0.153 Sum_probs=128.8
Q ss_pred HHHhccCCC--CCchhHHHHHHHHhcCCccc-ccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHH-HHH
Q 011587 164 KKVFDQMPM--RSSATWNAMINGYCSQSKKA-KDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEF-GAC 238 (482)
Q Consensus 164 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-a~~ 238 (482)
..+|++..+ ++...|+..|..|...-... .......+.+|+.... ..+..+ ....|..+.-.++..+...+ |..
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~-~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHE-LKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 356665554 24555655555554311110 2245556666666541 334444 34466666666655554332 333
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHH-HHHHHhcc----CCCHHHHHHHHHHHHhcCC-hHH-HH-HHHH
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNA-LLIFSRMR----EKNVLTWTAMATGMAIHGK-GNE-AI-RLLD 309 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~~~----~~~~~~~~~li~~~~~~~~-~~~-a~-~~~~ 309 (482)
+. ..++ ..+...|..-+....+.. |.+-- ..+|.... .+....|+... .++ ++. .. .++.
T Consensus 381 l~----~e~f--~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 381 LT----TELF--RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred hh----HHHh--cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 33 2333 445566655555555332 22211 12222222 23444555444 122 111 11 2222
Q ss_pred HHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH---hccCCHHHHHHHHHcC--C
Q 011587 310 SMRDCGVKPNAVTF-TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL---GRAGHLEEAYNFIMGI--P 383 (482)
Q Consensus 310 ~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~ 383 (482)
..... ..|+..|+ +.++.-+-..+-..+|..++..+.. --+|+...|..+|..= ..+| +.-+..+++.+ .
T Consensus 450 a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 450 ALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE 525 (568)
T ss_pred HHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH
Confidence 33333 34555554 4667777788888999999998887 5567788888777542 2333 66777788777 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 384 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
+-.|+..|...+..-...|..+.+-.++.++.+
T Consensus 526 fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 526 FGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 226788888888777788888888777776655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.47 E-value=15 Score=29.45 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=7.9
Q ss_pred hccCCHHHHHHHHHcC
Q 011587 367 GRAGHLEEAYNFIMGI 382 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~ 382 (482)
...|++.+|+.+|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3444555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.28 E-value=3.2 Score=34.41 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=65.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCH-----HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhc
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHI-----KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVH 401 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 401 (482)
-+.+.|++++|..-|.+... -+++.. ..|..-..++.+.+.++.|++-..+. .+.|+ .....--..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 46778999999999999988 444432 34555556778889999988777665 55553 22333334568888
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 011587 402 GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~ 419 (482)
..+++|+.-|..+++..|
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 899999999999999998
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.03 E-value=23 Score=30.94 Aligned_cols=58 Identities=19% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHHHhccCCHHHHHHHHHcC-CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 361 CIVDLLGRAGHLEEAYNFIMGI-PIKP----DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.+-|.+.|.+..|..-+++| .--| ....+-.+..+|...|-.++|.+.-+-+ ..+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~ 234 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL-GANY 234 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcC
Confidence 3456678888888887777776 1112 2334555677888888888887776644 4444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.00 E-value=19 Score=35.45 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.-|..|.++..+.+++..|.+.|.+.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34555555555555555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.86 E-value=6.1 Score=31.15 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=38.3
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
...++.++++.++..+.-..| .....-..-...+...|+|++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP--------~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRP--------NLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCC--------CccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347788888888888877777 344444455556677888888888888877655
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.99 E-value=16 Score=32.46 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhc-c-CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 011587 301 GNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCH-A-GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377 (482)
Q Consensus 301 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 377 (482)
+.+|+.+|+.... ..+--|..+...+++.... . .....-.++.+.+...++..++..+...+++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555553211 1233355555555555443 1 12233334444444434455666666677777777777777777
Q ss_pred HHHcC--C--CCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 378 FIMGI--P--IKPDAILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 378 ~~~~~--~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
+++.. . ..-|...|..+|+.....||..-..++..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 76655 1 22366667777777777777555544444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.86 E-value=21 Score=29.88 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=63.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNA-----VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (482)
.-+.+.|++.+|..-|...++. +++.. ..|..-..++.+.+.++.|+.--.+..+- + +........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-N-PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-C-chhHHHHHHHHHHHH
Confidence 4467889999999999999886 33332 23333445677888888888777777662 2 222333334456788
Q ss_pred ccCCHHHHHHHHHcC-CCCCCH
Q 011587 368 RAGHLEEAYNFIMGI-PIKPDA 388 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~-~~~p~~ 388 (482)
+..++++|++-|..+ ...|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 889999999888887 444544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.58 E-value=2.3 Score=23.51 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+|..+...|...|++++|...|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566777788889999999999998887665
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=84.16 E-value=31 Score=30.99 Aligned_cols=219 Identities=10% Similarity=-0.039 Sum_probs=121.8
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHH------HHHHHHHHhhccC-chHHHHHHHHHHHHh----C----CCCC---Cch
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDT------TMVCVLSVSSQLG-LLEFGACVHGYMEKT----F----YMPE---NDV 254 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~p~---~~~ 254 (482)
.|+.+.|..++.+...-.....|+.. .|+.-... ...+ +++.|...+++..+. + ..|. ...
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 78888888888887621112333321 22222333 3444 788887777766544 1 1110 123
Q ss_pred hHHHHHHHHHHcCCChH---HHHHHHHhccC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 255 FIGTALVDMYSKCGCLD---NALLIFSRMRE--KN-VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
.+...++.+|...+..+ +|..+++.+.. ++ ..++-.-+..+.+.++.+.+.+.+.+|...- .-....+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 46778888998888765 45555555542 33 4556566777777899999999999998862 223345555555
Q ss_pred HH---hccCcHHHHHHHHHHhHHhcCCCcCHH-HHHHH-HHH---HhccC------CHHHHHHHHHcC----CCCCCHHH
Q 011587 329 AC---CHAGLVEEGLHLFDNMKSKWGVEPHIK-HYSCI-VDL---LGRAG------HLEEAYNFIMGI----PIKPDAIL 390 (482)
Q Consensus 329 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l-i~~---~~~~g------~~~~A~~~~~~~----~~~p~~~~ 390 (482)
.+ ... ....|...+..+... .+.|... ....+ +.- ..+.+ +.+...++++.. +.+.+..+
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44 333 345566666666653 5555543 11111 111 11211 144444555532 22223333
Q ss_pred H---HHH----HHHHHhcCCHhHHHHHHHHHH
Q 011587 391 W---RSL----LSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 391 ~---~~l----~~~~~~~g~~~~a~~~~~~~~ 415 (482)
- .++ ...+.+.++++.|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 222 234567899999999998655
|
It is also involved in sporulation []. |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=84.15 E-value=14 Score=27.13 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
...++|..|.+.+...+ .....+-.+-+..+...|+|++|+..=.....||...|-+|-. .+.|--+++...+.+
T Consensus 20 HcH~EA~tIa~wL~~~~---~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG---EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHHHHHTT---TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 35677888888887776 3344444555566778888888854444445678777766554 477888888888887
Q ss_pred HHhCC
Q 011587 311 MRDCG 315 (482)
Q Consensus 311 m~~~g 315 (482)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76665
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.08 E-value=1.6 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHH
Q 011587 431 EDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
.....+..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355678899999999999999876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.01 E-value=9.3 Score=27.54 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=26.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 381 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
.+.+.|++....+.+++|.+.+|+..|.++++-+..+.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 33566777777777777777777777777777666443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.52 E-value=12 Score=32.10 Aligned_cols=145 Identities=11% Similarity=0.061 Sum_probs=72.8
Q ss_pred HHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HhCCCCCCH-HHHHHHHHHHhccCcHH
Q 011587 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM----RDCGVKPNA-VTFTSLFAACCHAGLVE 337 (482)
Q Consensus 263 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~-~~~~~ll~~~~~~~~~~ 337 (482)
.+.-.+.+++|.++|.+... .|--..+++.|=..|-+. .+.|-+-|. .+|.-...+| +..+++
T Consensus 23 lfgg~~k~eeAadl~~~Aan-----------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~ 90 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAAN-----------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPE 90 (288)
T ss_pred ccCCCcchHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChH
Confidence 45566789999999876543 122222222222222222 112222222 3444333433 344666
Q ss_pred HHHHHHHHhHHhc----CCCcCHHHHHHHHHHHhcc-CCHHHHHHHHHcC-----CCCCCHHHHHHHHHH---HHhcCCH
Q 011587 338 EGLHLFDNMKSKW----GVEPHIKHYSCIVDLLGRA-GHLEEAYNFIMGI-----PIKPDAILWRSLLSA---CNVHGDV 404 (482)
Q Consensus 338 ~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~---~~~~g~~ 404 (482)
+|.+.++...+-+ .+..-....-.+...|-.- .++++|+..|+.. +-..+...-..++++ -+..+++
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6665555444310 0111122333444555443 5666777666655 222333333334443 3567889
Q ss_pred hHHHHHHHHHHhcCC
Q 011587 405 ALGEKVGKILLQLQP 419 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~ 419 (482)
.+|.++|+++.+...
T Consensus 171 ~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887666
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.13 E-value=58 Score=33.28 Aligned_cols=189 Identities=15% Similarity=0.086 Sum_probs=89.2
Q ss_pred HcCCChHHHHHHHHhccC-----CC-----HHHHHHHHH--HHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHH
Q 011587 265 SKCGCLDNALLIFSRMRE-----KN-----VLTWTAMAT--GMAIHGKGNEAIRLLD--------SMRDCGVKPNAVTFT 324 (482)
Q Consensus 265 ~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~--~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~~~~ 324 (482)
+-.+++..|...+..+.+ |+ ...+...+. .+-..|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 445667677777666653 11 122333332 2345578888888886 334444444443332
Q ss_pred HH----HHHHhccCcHHH--HHHHHHHhHHhcCCCcC--HHHH-HHHHHHHhccC---------CHHHHHHHH-HcCCCC
Q 011587 325 SL----FAACCHAGLVEE--GLHLFDNMKSKWGVEPH--IKHY-SCIVDLLGRAG---------HLEEAYNFI-MGIPIK 385 (482)
Q Consensus 325 ~l----l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~--~~~~-~~li~~~~~~g---------~~~~A~~~~-~~~~~~ 385 (482)
.+ |.-+....+..+ +.++++.+.....-.|+ ..++ ..++.++.... .+.++++.. ...+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 111112222233 66666666552222222 2222 33333332211 223344444 333322
Q ss_pred C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH-----HHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 386 P-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF-----VALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 386 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
- ...+++.|..-+. .|+..+..+........-... + .-....| ..+...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~--d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--S--DYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--h--hhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 1223333333333 688887666665554432210 0 0123344 3455568889999999998877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=36 Score=30.65 Aligned_cols=235 Identities=8% Similarity=-0.003 Sum_probs=105.0
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccc----hHHHHHHHHHhhhccCCCCcCH
Q 011587 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC----AFNALVLFRDMLVDVSGVKPTD 217 (482)
Q Consensus 142 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~----~~~a~~~~~~m~~~~~~~~p~~ 217 (482)
+|..+....+..+...|..+-...+.+-+..+|...-...+.++.. .|. ..++...+..+. . -.|+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~-----lg~~~~~~~~a~~~L~~l~--~--~D~d~ 105 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQ-----LGMAKRCQDNVFNILNNLA--L--EDKSA 105 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCccchHHHHHHHHHHH--h--cCCCH
Confidence 4444555555555555543333333332233444444444555555 332 234555555542 1 13444
Q ss_pred HHHHHHHHHhhccCchH--HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLE--FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 295 (482)
..-...+.++...+... ....+...+...-. ..+..+-...+.++++.++.+....+..-+..++..+-...+.++
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF--DKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44444444444432211 01112222222111 234555556666666666544333333333445555555555555
Q ss_pred HhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 296 AIHG-KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 296 ~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
.+.+ ....+...+..+... ++..+-...+.++.+.++. .|...+-...+. + + .....+.++...|.. +
T Consensus 184 g~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred hcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-h
Confidence 5442 133455555554432 3445555566666666663 344433333331 2 1 123455566666664 4
Q ss_pred HHHHHHcC-CCCCCHHHHHHHHHHH
Q 011587 375 AYNFIMGI-PIKPDAILWRSLLSAC 398 (482)
Q Consensus 375 A~~~~~~~-~~~p~~~~~~~l~~~~ 398 (482)
|...+..+ .-.||..+-...+.++
T Consensus 253 a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 253 LLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHH
Confidence 55555554 2244555444444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.73 E-value=44 Score=32.06 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=81.3
Q ss_pred hhccCchHHHHH-HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChH
Q 011587 227 SSQLGLLEFGAC-VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 227 ~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 302 (482)
-...|++-.|-+ ++..+.... .++.........+...|+++.+.+.+..... ....+..+++....+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~----~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQ----QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCC----CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 344566665554 444444433 3334334444556788999999999876654 56778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|..+-+.|....+. +.........+.-..|-++++...|+++..
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 999999999887665 444443333344456788999999998876
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.64 E-value=3.6 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 312 (482)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666666553
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=82.51 E-value=35 Score=30.31 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=64.9
Q ss_pred cCCCCcCHHHHHHHHHHhhccC-----chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC
Q 011587 210 VSGVKPTDTTMVCVLSVSSQLG-----LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284 (482)
Q Consensus 210 ~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 284 (482)
..+.++|......++..+...+ +..-..+...+- +.+-.|..++.....+...|.+.|++.+|+..|-.-..++
T Consensus 42 ~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 42 KSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp HTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 3455555555555554444332 122223333333 4444446688889999999999999999998876665555
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
...+..++......|...++ +...-..++. |.-.++...|...++...++
T Consensus 121 ~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 121 AFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 55543344333333333332 2333333444 34457888888877777764
|
; PDB: 3LKU_E 2WPV_G. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.23 E-value=4.4 Score=22.34 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555566666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.26 E-value=3.1 Score=22.84 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
..+..+...+.+.|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.24 E-value=28 Score=28.39 Aligned_cols=136 Identities=8% Similarity=-0.016 Sum_probs=84.3
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh-HHHHHHHHHHhCCChhHHHHHhccCCCC--CchhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL-VATTLIHFYASNKDISSGKKVFDQMPMR--SSATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 181 (482)
+...|...++..... . .++|..-|..+.+.|...-+. ..-.........|+...|...|.++-.. .+.....+
T Consensus 58 sgd~flaAL~lA~~~--k--~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 58 SGDAFLAALKLAQEN--K--TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred chHHHHHHHHHHHcC--C--chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH
Confidence 445566665553333 3 778888888888876543222 2233445567788888888888887532 22222111
Q ss_pred H---HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCC
Q 011587 182 I---NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249 (482)
Q Consensus 182 i---~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (482)
. .+|.- ++.|.++......+-+- ..+-+.-...-..|.-+-.+.|++.+|.+.|.++......
T Consensus 134 ARlraa~lL---vD~gsy~dV~srvepLa--~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 134 ARLRAAYLL---VDNGSYDDVSSRVEPLA--GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHHHH---hccccHHHHHHHhhhcc--CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 1 12211 12788888887777775 4454445555567777778889999999999888775543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.14 E-value=2.7 Score=25.26 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 435 ALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57899999999999999999998654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.85 E-value=19 Score=26.27 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 376 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
+.-+-.+.+.|++....+.+++|.+..|+..|.++|+-+..+-. +....|..++.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--------~~~~~Y~~~lq 87 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--------NKKEIYPYILQ 87 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--------T-TTHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--------ChHHHHHHHHH
Confidence 33334446778888888899999999999999999988877655 33336665553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.46 E-value=21 Score=29.89 Aligned_cols=73 Identities=14% Similarity=-0.066 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHcCCChHHH
Q 011587 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP-ENDVFIGTALVDMYSKCGCLDNA 273 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g~~~~A 273 (482)
.|.+.|-.+. ..+.--++.....+...|. ..+.+++..++..+++..-.- ..++..+.+|+..|-+.|+++.|
T Consensus 124 ~A~~~fL~~E--~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLE--GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHc--CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444454443 3333333333333333333 444555555555444432110 22444455555555555554444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.25 E-value=43 Score=29.90 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCCHHHH
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMR-----DCGVKPNAVTF 323 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~~~ 323 (482)
.+++.....|..+|.+.+|.++-++... -+...|-.++..+...|+--.+..-++++. +.|+..+...+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3445566677788888888888877764 255667777788888888777776666663 34555554443
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=80.21 E-value=26 Score=27.65 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc
Q 011587 319 NAVTFTSLFAACCHAGL-VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (482)
+..+|.+++.+.++... --.+..+|+.+++ .+.+++...|..+|.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC
Confidence 33455566666555444 3344555555555 35566666666666655543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 482 | |||
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 4e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 4e-10
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 259 ALVDMYSKCGCLDNALLIFSRMREK-------NVLTWTAMATGMAIHGKGNEAIRLLDSM 311
A L A + + + + A+ G A G E + +L +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGL-HLFDNMKSKWGVEPHIKHYSCI 362
+D G+ P+ +++ + + + M + + +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 6e-04
Identities = 67/479 (13%), Positives = 141/479 (29%), Gaps = 132/479 (27%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
K+I + I I + S + ++L+ T + + + FV
Sbjct: 42 PKSILSKEEIDHI--------IMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYK 92
Query: 75 FLFNTL-IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL--WL---- 127
FL + + P ++ + ++D VFA + +R L L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDR---LYND-NQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 128 -GRQIHVHVTKRGFMF----NVLVATTL----IH-------FYASNKDISSGKKVFDQMP 171
+ + + G + + + F+ + K+ +S + V + +
Sbjct: 149 PAKNVLID----G-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 172 ---MRSSATWNAMINGYCSQSKKAKDCAFNALVLF------RDMLV--DVSGVKPTDTTM 220
+ W + + + + L +LV +V +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-----NAKA 258
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
++S ++ LL T + L + LD+ + +
Sbjct: 259 WNAFNLSCKI-LL-----------TT-----RFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
K++L E P + S+ A + +GL
Sbjct: 302 EVKSLL---LKYLDCRPQDLPREV---------LTTNPRRL---SIIAE-----SIRDGL 341
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRA-----GHLEEA-----YN--FIM----GIPI 384
+DN W KH +C D L LE A ++ + IP
Sbjct: 342 ATWDN----W------KHVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP-EVTF------VDVACTSEDFVAL 436
+++W ++ + V + + L++ QP E T +++ E+ AL
Sbjct: 390 ILLSLIWFDVIKSDV---MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.96 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.42 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.41 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.4 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.34 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.27 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.19 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.99 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.98 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.98 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.81 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.77 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.57 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.57 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.51 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.46 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.41 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.41 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.41 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.26 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.22 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.18 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.06 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.04 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.88 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.83 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.62 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.48 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.4 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.29 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.19 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.87 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.39 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.35 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.86 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.84 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.51 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.16 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.71 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.71 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.68 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.19 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.53 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.93 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.89 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.82 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.97 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.75 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.52 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.1 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.95 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.74 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.66 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.07 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.62 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.48 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 81.72 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.83 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=311.91 Aligned_cols=426 Identities=10% Similarity=-0.014 Sum_probs=373.1
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCChhhHH
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPNLFLFN 78 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~ 78 (482)
|.|+...|+.++..+. |++++|..+++.+... .|+..++..+...|... |++++|.++|+.+. .++..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 154 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCT---GDYARAKCLLTKEDLYNRSSACRY 154 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHT---TCHHHHHHHHHHTCGGGTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHc---CcHHHHHHHHHHHhccccchhHHH
Confidence 4567888888888877 8999999999999854 46778888999999999 99999999999984 77888888
Q ss_pred HHhcC----CCCccHHHHHHHHHHC---------------CCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhC
Q 011587 79 TLIRC----TPPQDSVLVFAYWVSK---------------GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139 (482)
Q Consensus 79 ~ll~~----~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (482)
.++.. |++++|+++|+++... +..+ +..+|+.++.+|.+.| + +++|.++|+++.+.+
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~--~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL-EASMCYLRGQVYTNLS-N--FDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH-HHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch-hHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHhC
Confidence 88777 9999999999953322 1122 5789999999999999 9 999999999999875
Q ss_pred CCCchhHHHH--------------------------------------HHHHHHhCCChhHHHHHhccCCC--CCchhHH
Q 011587 140 FMFNVLVATT--------------------------------------LIHFYASNKDISSGKKVFDQMPM--RSSATWN 179 (482)
Q Consensus 140 ~~~~~~~~~~--------------------------------------l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 179 (482)
+.+...+.. ++..|.+.|++++|.++|+++.+ ++..+|+
T Consensus 231 -p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 231 -AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp -TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred -chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 223333333 35566788999999999999987 7999999
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
.++.+|.+ .|++++|+.+|+++. ..+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.
T Consensus 310 ~l~~~~~~-----~g~~~~A~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 378 (597)
T 2xpi_A 310 CKADTLFV-----RSRFIDVLAITTKIL--EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLA 378 (597)
T ss_dssp HHHHHHHH-----TTCHHHHHHHHHHHH--HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHH
T ss_pred HHHHHHHH-----hcCHHHHHHHHHHHH--HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHH
Confidence 99999999 999999999999997 333 3367789999999999999999999999999776 678899999
Q ss_pred HHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999863 467899999999999999999999999999875 34788999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCCC--HHHHHHHHHHHHhcCCHhHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKPD--AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a 407 (482)
++|.++|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|
T Consensus 458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999983 3557899999999999999999999999988 45787 78999999999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+.++++.+.+| .+..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 536 ~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 536 IDALNQGLLLST--------NDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHSS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC--------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999998 789999999999999999999999999998653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=286.96 Aligned_cols=405 Identities=7% Similarity=-0.095 Sum_probs=350.6
Q ss_pred CChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCC----------
Q 011587 5 PGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP---------- 72 (482)
Q Consensus 5 p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~---------- 72 (482)
||..++..+...+. |+++.|..+++.+.. .++++.+++.++..|.+. |++++|.++|+.....
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKL---YDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHT---TCHHHHHHHHCSSCTTC---------
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHH---hhHHHHHHHHhccCCccccccccccc
Confidence 67777777766665 899999999887753 478889999999999999 9999999999964432
Q ss_pred ---------ChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHH---------------------------
Q 011587 73 ---------NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFA--------------------------- 112 (482)
Q Consensus 73 ---------~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~l--------------------------- 112 (482)
+..+|+.+... |++++|+++|++|.+.+ |.+...+..+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 36788888777 99999999999999865 4244444433
Q ss_pred -----------HHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC---CCCchhH
Q 011587 113 -----------LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP---MRSSATW 178 (482)
Q Consensus 113 -----------l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 178 (482)
+..|.+.| + +++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~g-~--~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 342 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHED-E--LRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHH-H--HHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH
T ss_pred HHHHHHHHHHHHHHHcCcc-h--HHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH
Confidence 33444555 6 99999999998876 6889999999999999999999999999986 2478899
Q ss_pred HHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHH
Q 011587 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258 (482)
Q Consensus 179 ~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 258 (482)
+.++.++.+ .|++++|..+++++. . ..+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+
T Consensus 343 ~~l~~~~~~-----~g~~~~A~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 411 (597)
T 2xpi_A 343 PLHLASLHE-----SGEKNKLYLISNDLV--D-RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQFGPAWI 411 (597)
T ss_dssp HHHHHHHHH-----HTCHHHHHHHHHHHH--H-HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHH-----hCCHHHHHHHHHHHH--h-hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 999999999 999999999999996 2 234578899999999999999999999999999876 66888999
Q ss_pred HHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 259 ALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 999999999999999999999864 478899999999999999999999999998864 3478899999999999999
Q ss_pred HHHHHHHHHHhHHhc---CCCcC--HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 011587 336 VEEGLHLFDNMKSKW---GVEPH--IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
+++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++ ...| +..+|..+..+|.+.|++++|.
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999998732 55777 789999999999999999999999988 3334 8899999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
+.++++++..| .+...+..+..+|.
T Consensus 571 ~~~~~~l~~~p--------~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 571 THLHESLAISP--------NEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHCT--------TCHHHHHHHHHTTC
T ss_pred HHHHHHHhcCC--------CChHHHHHHHHHHh
Confidence 99999999999 78888888877664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=249.63 Aligned_cols=212 Identities=11% Similarity=0.031 Sum_probs=163.6
Q ss_pred ccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 011587 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166 (482)
Q Consensus 87 ~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 166 (482)
..+..+.+.+.+.+..+.....++.+|.+|++.| + +++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G-~--~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--- 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG-D--VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--- 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSC-C--HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---
Confidence 3455666777777766523346888899999888 8 999999999999999999999999999988887765432
Q ss_pred hccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 011587 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246 (482)
Q Consensus 167 ~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 246 (482)
.+ .+..++|.++|++|. ..|+.||..||+++|.+|++.|++++|.+++++|.+.
T Consensus 81 -------------------~~-----~~~l~~A~~lf~~M~--~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 134 (501)
T 4g26_A 81 -------------------SP-----NPGLSRGFDIFKQMI--VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF 134 (501)
T ss_dssp -------------------SC-----CHHHHHHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred -------------------hh-----cchHHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 23 677899999999999 9999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 011587 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR----EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322 (482)
Q Consensus 247 ~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 322 (482)
|+ .|+..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|..|+..|
T Consensus 135 g~--~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 135 GI--QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp TC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CC--CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 99 5588888888888888888888888887776 36777788888888888888888888888877777778888
Q ss_pred HHHHHHHHhc
Q 011587 323 FTSLFAACCH 332 (482)
Q Consensus 323 ~~~ll~~~~~ 332 (482)
|+.++..|+.
T Consensus 213 ~~~l~~~F~s 222 (501)
T 4g26_A 213 FDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 8777777765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=241.96 Aligned_cols=212 Identities=15% Similarity=0.127 Sum_probs=161.0
Q ss_pred HHHHHHHHhhhccCCCCcCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 011587 198 NALVLFRDMLVDVSGVKPTD-TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~ 276 (482)
.+..+.+.++ ..+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+ .||..+|++||.+|++.+...++
T Consensus 8 ~~e~L~~~~~--~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv--~pd~~tyn~Li~~c~~~~~~~~~--- 80 (501)
T 4g26_A 8 PSENLSRKAK--KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGV--QLSQYHYNVLLYVCSLAEAATES--- 80 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTTCCCCSSS---
T ss_pred hHHHHHHHHH--HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhCCchhhh---
Confidence 3556666776 66666544 4688889999999999999999999999999 55999999999999887754322
Q ss_pred HHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH
Q 011587 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356 (482)
Q Consensus 277 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 356 (482)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+. |+.||.
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~ 140 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRL 140 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcc
Confidence 223456778888888888888888888888888888888888888888888884 888888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
.+|+++|.+|++.|++++|.++|++| |+.||..||++||.+|++.|+.++|.+++++|.+.+. .|+..||
T Consensus 141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~-------~ps~~T~ 213 (501)
T 4g26_A 141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR-------QVSKSTF 213 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------SBCHHHH
T ss_pred ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC-------CcCHHHH
Confidence 88888888888888888888888888 7888888888888888888888888888888888777 4888888
Q ss_pred HHHHHHHHhC
Q 011587 434 VALSNIYASA 443 (482)
Q Consensus 434 ~~l~~~~~~~ 443 (482)
+.++..|...
T Consensus 214 ~~l~~~F~s~ 223 (501)
T 4g26_A 214 DMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHSH
T ss_pred HHHHHHHhcC
Confidence 8888877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=219.55 Aligned_cols=360 Identities=11% Similarity=0.004 Sum_probs=307.1
Q ss_pred CChHHHHHHhhcCC--CCChhhHHHHhcC-----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFD--PPNLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~--~~~~~~~~~ll~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
|++++|.+.++... .|+.......+.. |++++|...++...+.. |.+..+|..+...+.+.| + +++|.
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g-~--~~~A~ 87 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERG-Q--LQEAI 87 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-C--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCC-C--HHHHH
Confidence 77777777776654 4443333333222 88888888888887753 558889999999999999 9 99999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHh
Q 011587 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m 206 (482)
..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+.. .|++++|.+.|+++
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-----LGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----ccCHHHHHHHHHHH
Confidence 9999999874 44567899999999999999999999998763 4 45667788888888 99999999999998
Q ss_pred hhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C
Q 011587 207 LVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K 283 (482)
Q Consensus 207 ~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 283 (482)
. . ..| +..+|..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+ |
T Consensus 162 l--~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 162 I--E--TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp H--H--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred H--H--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 7 3 234 57789999999999999999999999999987 67888999999999999999999999998863 3
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 284 -NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 284 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
+..++..+..+|.+.|++++|...|+++.+.+. .+..++..+...+.+.|++++|...|+++.+ ..+.+..++..+
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 311 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNL 311 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHH
Confidence 678899999999999999999999999998743 3577899999999999999999999999998 356788899999
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
...+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...++++++..| .+...|..+...+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--------~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--------TFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT--------TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHhHHHHH
Confidence 99999999999999999988 5555 678899999999999999999999999999988 6788888888888
Q ss_pred HhCCC
Q 011587 441 ASAER 445 (482)
Q Consensus 441 ~~~g~ 445 (482)
...|+
T Consensus 384 ~~~~~ 388 (388)
T 1w3b_A 384 KEMQD 388 (388)
T ss_dssp HHTCC
T ss_pred HHccC
Confidence 77663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=218.23 Aligned_cols=347 Identities=10% Similarity=0.012 Sum_probs=305.9
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|.+.+..+.+.. |.+...+..+...+...+ + +++|...++..++.. +.+..+|..+...|.+.|++++|
T Consensus 13 g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~-~--~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCR-R--LDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 89999999999998854 646666777777777777 8 999999999999874 66788999999999999999999
Q ss_pred HHHhccCC--CC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccCchHHHHHH
Q 011587 164 KKVFDQMP--MR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLGLLEFGACV 239 (482)
Q Consensus 164 ~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 239 (482)
.+.|+++. .| +..+|..+..++.. .|++++|++.|+++. . ..|+ ...+..+...+...|++++|.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al--~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVA-----AGDMEGAVQAYVSAL--Q--YNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-----HSCSSHHHHHHHHHH--H--HCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--H--hCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999876 34 56689999999999 999999999999987 3 3454 45677788889999999999999
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 240 ~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
++++.+.. +.+..++..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++......
T Consensus 158 ~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 158 YLKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99999987 67888999999999999999999999999874 3567899999999999999999999999987642
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSL 394 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 394 (482)
.+..++..+...+.+.|++++|...|+++.+. .+.+..+|..+...+.+.|++++|.+.|+++ ..+.+..++..+
T Consensus 235 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 235 -NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 35788899999999999999999999999983 3456788999999999999999999999988 334578899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
...+...|++++|...++++.+..| .+..++..++.+|.+.|++++|...++++.+.
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFP--------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCT--------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999988 78899999999999999999999999999863
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-22 Score=195.72 Aligned_cols=390 Identities=8% Similarity=-0.065 Sum_probs=301.0
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHhhcCC--CCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHh
Q 011587 43 AQLIQLYCTKKASPQSTKIVHFVFTHFD--PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116 (482)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~ 116 (482)
+......+... |++++|...|+... .|+...|..+..+ |++++|++.|+.+.+.+ |.+..++..+..++
T Consensus 9 ~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRN---KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHT---SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 34455666777 89999999888876 5777777666555 89999999999888854 54777888888888
Q ss_pred hhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHh-----------------------------
Q 011587 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF----------------------------- 167 (482)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----------------------------- 167 (482)
...| + +++|...|+++.+.+ +++......++..+........+.+.+
T Consensus 84 ~~~g-~--~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 84 EGLG-K--FADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHTT-C--HHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHh-h--HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 8888 8 999999999888775 334444444444333322222221111
Q ss_pred ---------ccCC---------CC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhcc-----CCC--------Cc
Q 011587 168 ---------DQMP---------MR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV-----SGV--------KP 215 (482)
Q Consensus 168 ---------~~~~---------~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~-----~~~--------~p 215 (482)
.... .| +...+......+..... .|++++|+..|+++. . ... +.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS--PESYDKADESFTKAA--RLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC--TTHHHHHHHHHHHHH--HHHHHHTTTSTTCHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHH--HHhhhhhccCccccccChH
Confidence 1110 01 12223222222221001 789999999999987 3 111 22
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
+..++..+...+...|++++|...++++.+.. +. ...+..+...|...|++++|...++++.+ .+..+|..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 311 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence 45678888999999999999999999999987 33 88899999999999999999999999875 3677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
..|...|++++|...+++..+.... +...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999887533 6678888999999999999999999999984 345678899999999999999
Q ss_pred HHHHHHHHcC-CC---CCC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 373 EEAYNFIMGI-PI---KPD----AILWRSLLSACNV---HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 373 ~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
++|.+.++++ .. .++ ...+..+...+.. .|++++|...++++.+..| .+..++..+..+|.
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--------RSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHH
Confidence 9999999887 21 222 4488889999999 9999999999999999998 78899999999999
Q ss_pred hCCCchHHHHHHHHhHhcC
Q 011587 442 SAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~~ 460 (482)
+.|++++|...+++..+..
T Consensus 461 ~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 461 QQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhc
Confidence 9999999999999988654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-21 Score=189.51 Aligned_cols=337 Identities=8% Similarity=-0.036 Sum_probs=272.0
Q ss_pred HHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhcc
Q 011587 90 VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169 (482)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 169 (482)
...+...... .|.+...+..+...+.+.| + +++|..+|+++++.. +.+..++..+..+|...|++++|...|++
T Consensus 12 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g-~--~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 12 DLGTENLYFQ--SMADVEKHLELGKKLLAAG-Q--LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccc--cHHHHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444433 2447778888888888888 8 999999999999874 55788899999999999999999999998
Q ss_pred CCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH----HHHHHH------------HHHhhcc
Q 011587 170 MPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD----TTMVCV------------LSVSSQL 230 (482)
Q Consensus 170 ~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~~~~~l------------~~~~~~~ 230 (482)
+.+ .+..+|..+...|.. .|++++|...|+++. . ..|+. ..+..+ ...+...
T Consensus 86 al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLK-----QGKLDEAEDDFKKVL--K--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--T--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--h--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 763 367788899999999 999999999999987 3 34543 454444 4458899
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
|++++|...++++.+.. +.+..++..++.+|.+.|++++|..+|+++.+ .+..+|..+..+|...|++++|...
T Consensus 157 ~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887 67889999999999999999999999999874 5788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCcC-----HHHHHHHHHHHhccC
Q 011587 308 LDSMRDCGVKPNAVTFTSL------------FAACCHAGLVEEGLHLFDNMKSKWGVEPH-----IKHYSCIVDLLGRAG 370 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g 370 (482)
|+++..... .+...+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|
T Consensus 234 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 234 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCC
Confidence 999987532 234444444 78899999999999999999984 333 457888999999999
Q ss_pred CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH----------
Q 011587 371 HLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN---------- 438 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------- 438 (482)
++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++..| .+...+..+..
T Consensus 310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE--------NDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--------SCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------chHHHHHHHHHHHHHhhcccc
Confidence 999999999987 4445 789999999999999999999999999999998 67778877773
Q ss_pred --HHHhCC-----CchHHHHHHHHh
Q 011587 439 --IYASAE-----RWPDVESVRKQM 456 (482)
Q Consensus 439 --~~~~~g-----~~~~a~~~~~~m 456 (482)
.|...| +.+++.+.++++
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHH
Confidence 344455 556777777763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-21 Score=188.18 Aligned_cols=340 Identities=10% Similarity=-0.011 Sum_probs=273.4
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|+++|+.+.+.. |.+..++..+..++...| + +++|...++++++.+ +.+..++..+..+|.+.|++++|
T Consensus 40 g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g-~--~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 40 GQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMG-K--SKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 88889999999888753 547888999999999988 8 999999999999875 45678899999999999999999
Q ss_pred HHHhccCCCC---Cc---hhHHHHH------------HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHH
Q 011587 164 KKVFDQMPMR---SS---ATWNAMI------------NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225 (482)
Q Consensus 164 ~~~~~~~~~~---~~---~~~~~li------------~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~ 225 (482)
.+.|+++.+. +. ..+..+. ..+.. .|++++|+..|+++. .. .+.+...+..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG-----SGDYTAAIAFLDKIL--EV-CVWDAELRELRAE 185 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--Hh-CCCChHHHHHHHH
Confidence 9999988643 23 5555553 34788 999999999999987 32 2347788999999
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHH-----------
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAM----------- 291 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l----------- 291 (482)
++...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+ | +...+..+
T Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 67889999999999999999999999999874 3 44445444
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 292 -ATGMAIHGKGNEAIRLLDSMRDCGVKPN-----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 292 -i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++.+. .+.+...|..+..+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 78899999999999999999885 344 447888899999999999999999999873 34578899999999
Q ss_pred HhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH------------HHhcC-----CHhHHHHHHHH-HHhcCCCccccc
Q 011587 366 LGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSA------------CNVHG-----DVALGEKVGKI-LLQLQPEVTFVD 425 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~~~~~ 425 (482)
|...|++++|.+.+++. .+.| +...+..+..+ |...| +.+++.+.+++ ..+..|+..
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~--- 415 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF--- 415 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC---
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC---
Confidence 99999999999999988 6667 45566655532 33344 66778888886 666666311
Q ss_pred ccCC-------chhHHHHHHHHHhCCCchHH
Q 011587 426 VACT-------SEDFVALSNIYASAERWPDV 449 (482)
Q Consensus 426 ~~~~-------~~~~~~l~~~~~~~g~~~~a 449 (482)
++ ...|..+..+|...++.++.
T Consensus 416 --~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 416 --QNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp --CSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred --CCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 22 23666777777777765543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=191.71 Aligned_cols=378 Identities=10% Similarity=-0.053 Sum_probs=298.6
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~ 91 (482)
|+++.|...++.+.+.. |+...+..+...|... |++++|.+.++... .|+ ...|..+... |++++|..
T Consensus 20 g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV---GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH---hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999987 6888999999999999 99999999999876 343 3455544444 99999999
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh---------------------------------
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR--------------------------------- 138 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--------------------------------- 138 (482)
.|+.+...+ |.+......++..+.... . ...+.+.+..+...
T Consensus 95 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 95 DLSVLSLNG--DFNDASIEPMLERNLNKQ-A--MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHSS--SCCGGGTHHHHHHHHHHH-H--HHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHhcC--CCccchHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 999999876 325555555555544433 2 33333322111100
Q ss_pred --CC---------CCchhHHHHHHHHHHh---CCChhHHHHHhccCCC----------------C-CchhHHHHHHHHhc
Q 011587 139 --GF---------MFNVLVATTLIHFYAS---NKDISSGKKVFDQMPM----------------R-SSATWNAMINGYCS 187 (482)
Q Consensus 139 --~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~ 187 (482)
.. +.+...+..+...+.. .|++++|...|+++.+ | +..+|..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 00 1124444445554554 8999999999987654 1 35678888889999
Q ss_pred CCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC
Q 011587 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267 (482)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 267 (482)
.|++++|+..|+++. .. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...
T Consensus 250 -----~~~~~~A~~~~~~~l--~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 250 -----KNDPLGAHEDIKKAI--EL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp -----SSCHHHHHHHHHHHH--HH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHH--hh--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHh
Confidence 999999999999987 33 3447788999999999999999999999999877 66788899999999999
Q ss_pred CChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 268 GCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 268 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999863 366789999999999999999999999998763 2356788889999999999999999999
Q ss_pred HhHHhcCCCcC----HHHHHHHHHHHhc---cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 345 NMKSKWGVEPH----IKHYSCIVDLLGR---AGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 345 ~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
++.+...-.++ ...+..+...+.. .|++++|.+.+++. ...| +..++..+...+...|++++|...++++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99874222222 4488999999999 99999999999987 3334 67888999999999999999999999999
Q ss_pred hcCC
Q 011587 416 QLQP 419 (482)
Q Consensus 416 ~~~~ 419 (482)
+..|
T Consensus 477 ~~~~ 480 (514)
T 2gw1_A 477 DLAR 480 (514)
T ss_dssp HHCS
T ss_pred Hhcc
Confidence 9998
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-20 Score=184.74 Aligned_cols=248 Identities=10% Similarity=0.007 Sum_probs=209.7
Q ss_pred cchHHHHHHHHHhhhccCCCCcC--------HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 011587 194 DCAFNALVLFRDMLVDVSGVKPT--------DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265 (482)
Q Consensus 194 ~~~~~a~~~~~~m~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~ 265 (482)
+++++|+.+|+++. ...|+ ..++..+...+...|++++|...++.+.+.. + +...+..+...|.
T Consensus 216 ~~~~~A~~~~~~~l----~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---~-~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLL----SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---P-TPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHH----C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---C-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH----HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---C-CchHHHHHHHHHH
Confidence 47899999999987 23343 3357777788899999999999999999986 3 3788999999999
Q ss_pred cCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 011587 266 KCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342 (482)
Q Consensus 266 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 342 (482)
..|++++|...|+++.+ .+..+|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998874 46788999999999999999999999999886432 567888899999999999999999
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--------CCCCCHHHHHHHHHHHHhc----------CCH
Q 011587 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--------PIKPDAILWRSLLSACNVH----------GDV 404 (482)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~----------g~~ 404 (482)
++++.+. .+.+...+..+...+...|++++|.+.|++. ........+......+... |++
T Consensus 367 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 367 FNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 9999984 3556778999999999999999999999886 1112333345556677777 999
Q ss_pred hHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
++|...++++.+..| .+...+..+..+|.+.|++++|...+++..+..
T Consensus 445 ~~A~~~~~~a~~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 445 NAAIKLLTKACELDP--------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999 788999999999999999999999999987654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-18 Score=162.62 Aligned_cols=311 Identities=7% Similarity=-0.074 Sum_probs=253.7
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 181 (482)
+...+..+...+...| + +++|...++++++.. +.+..++..+..++...|++++|...|+...+ | +...|..+
T Consensus 2 ~~~~~~~~~~~~~~~g-~--~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAG-Q--LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4556677777778877 7 999999999998874 44678888888999999999999999988752 3 66788888
Q ss_pred HHHHhcCCcccccchHHHHHHHHHhhhccCCCCc----CHHHHHHH------------HHHhhccCchHHHHHHHHHHHH
Q 011587 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP----TDTTMVCV------------LSVSSQLGLLEFGACVHGYMEK 245 (482)
Q Consensus 182 i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~ 245 (482)
...+.. .|++++|+..|++.. ...| +...+..+ ...+...|++++|...++.+.+
T Consensus 78 ~~~~~~-----~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 78 GHLLLK-----QGKLDEAEDDFKKVL----KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHH-----HTCHHHHHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCChHHHHHHHHHHH----hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888988 999999999999886 3344 33344444 5788899999999999999999
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 011587 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322 (482)
Q Consensus 246 ~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 322 (482)
.. +.+...+..+...+...|++++|...++++.+ .+..++..+...+...|++++|...|++..+.... +...
T Consensus 149 ~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 224 (359)
T 3ieg_A 149 VC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 224 (359)
T ss_dssp HC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hC---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHH
Confidence 87 67888999999999999999999999999875 46788999999999999999999999999876322 3333
Q ss_pred HH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHcC-CCC
Q 011587 323 FT------------SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI----KHYSCIVDLLGRAGHLEEAYNFIMGI-PIK 385 (482)
Q Consensus 323 ~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 385 (482)
+. .+...+.+.|++++|...++++.+. . +.+. ..+..+...+...|++++|.+.+++. ...
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 32 2356688999999999999999984 2 2233 33556788999999999999999988 334
Q ss_pred C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 386 P-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 386 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
| +..++..+...+...|++++|...++++++..| .+...+..+..+...
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--------~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--------NDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHH
Confidence 5 788999999999999999999999999999998 677777777766554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-19 Score=163.56 Aligned_cols=296 Identities=11% Similarity=0.028 Sum_probs=250.1
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH
Q 011587 143 NVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219 (482)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~ 219 (482)
++..+..+...+...|++++|...|+.+.+ .+..+|..+...+.. .|++++|+..|+++. .. .+.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-----MGKSKAALPDLTKVI--AL-KMDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH--HH-CTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-----ccCHHHHHHHHHHHH--Hh-CCCcchH
Confidence 456788899999999999999999998753 367789999999999 999999999999987 32 2236688
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCC---CchhHHHHH------------HHHHHcCCChHHHHHHHHhccC--
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE---NDVFIGTAL------------VDMYSKCGCLDNALLIFSRMRE-- 282 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~-- 282 (482)
+..+...+...|++++|...++++.+.. + .+...+..+ ...+...|++++|..+++++.+
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998876 5 566666655 6889999999999999999864
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHH-
Q 011587 283 -KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS- 360 (482)
Q Consensus 283 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 360 (482)
.+..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+. .+.+...+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 227 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 227 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHH
Confidence 467889999999999999999999999998874 347788999999999999999999999999984 233333333
Q ss_pred -----------HHHHHHhccCCHHHHHHHHHcC-CCCCC-H----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccc
Q 011587 361 -----------CIVDLLGRAGHLEEAYNFIMGI-PIKPD-A----ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423 (482)
Q Consensus 361 -----------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 423 (482)
.+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|...++++.+..|
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---- 303 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP---- 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc----
Confidence 2366788999999999999987 33343 3 2355577889999999999999999999988
Q ss_pred ccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+..++..+..++.+.|++++|...+++..+..
T Consensus 304 ----~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 304 ----DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999988654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=172.62 Aligned_cols=375 Identities=11% Similarity=-0.013 Sum_probs=271.5
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~ 91 (482)
|+++.|...++.+.+.. +.++..+..+...|... |++++|.+.|+... .|+ ...+..+... |++++|++
T Consensus 39 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD-PNEPVFYSNISACYIST---GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77888888888877765 44566677777777777 88888888887765 332 3333333333 88888888
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh------CCCCchh--------------------
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR------GFMFNVL-------------------- 145 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~-------------------- 145 (482)
.|+ .... .| + .....+..+...+ . ...|...++.+... ...|+..
T Consensus 115 ~~~-~~~~--~~-~--~~~~~~~~~~~~~-~--~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 115 DLS-VLSL--NG-D--FDGASIEPMLERN-L--NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHH-HHC----------------CHHHHH-H--HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHH-HHhc--CC-C--CChHHHHHHHHHH-H--HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 885 3322 12 1 1122233334444 4 55666666666432 0111111
Q ss_pred ----------HHHHHHHHHHhC--------CChhHHHHHhccCCC--CC--------chhHHHHHHHHhcCCcccccchH
Q 011587 146 ----------VATTLIHFYASN--------KDISSGKKVFDQMPM--RS--------SATWNAMINGYCSQSKKAKDCAF 197 (482)
Q Consensus 146 ----------~~~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~~~~~ 197 (482)
....+...+... |++++|..+|+++.+ |+ ..+|..+...+.. .|+++
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~-----~~~~~ 260 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL-----KNNLL 260 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH-----TTCHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh-----cccHH
Confidence 222222222222 478899999988764 32 2246666677788 89999
Q ss_pred HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 011587 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~ 277 (482)
+|+..|++.. . ..|+...+..+...+...|+++.|...++++.+.. +.+..++..+...|...|++++|...|
T Consensus 261 ~A~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 261 DAQVLLQESI--N--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHH--H--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH--h--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999987 3 45668889999999999999999999999999987 668889999999999999999999999
Q ss_pred HhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--
Q 011587 278 SRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV-- 352 (482)
Q Consensus 278 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 352 (482)
+++.+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 99874 356789999999999999999999999998864 335678888999999999999999999998874211
Q ss_pred --CcCHHHHHHHHHHHhcc----------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 353 --EPHIKHYSCIVDLLGRA----------GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 353 --~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
......+..+...+... |++++|...|++. ...| +...+..+...+...|++++|...|+++.+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11223345556677777 9999999999988 3344 67889999999999999999999999999998
Q ss_pred C
Q 011587 419 P 419 (482)
Q Consensus 419 ~ 419 (482)
|
T Consensus 493 ~ 493 (537)
T 3fp2_A 493 R 493 (537)
T ss_dssp -
T ss_pred C
Confidence 8
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-18 Score=159.90 Aligned_cols=286 Identities=10% Similarity=-0.008 Sum_probs=203.6
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH
Q 011587 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217 (482)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~ 217 (482)
+.+...+..+...+...|++++|.++|+++.+ .+...+..++..+.. .|++++|...++++. .. .+.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE-----LNKANELFYLSHKLV--DL-YPSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH-----HTCHHHHHHHHHHHH--HH-CTTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-----hhhHHHHHHHHHHHH--Hh-CcCCH
Confidence 44555666677777777777777777777642 245556666677777 777788888777775 21 12345
Q ss_pred HHHHHHHHHhhccC-chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLG-LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMAT 293 (482)
Q Consensus 218 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 293 (482)
..+..+...+...| ++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+ .+..++..+..
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 66777777777777 7777888887777765 55667777788888888888888888877763 24556666777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCcCHHHHHHHHHHH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG-------VEPHIKHYSCIVDLL 366 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~ 366 (482)
.|...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 7888888888888888877764 33567777777788888888888888887776311 133456777888888
Q ss_pred hccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH-HhC
Q 011587 367 GRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY-ASA 443 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 443 (482)
...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..| .+...+..+..++ ...
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~ 318 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR--------DDTFSVTMLGHCIEMYI 318 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS--------CCHHHHHHHHHHHHTTT
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC--------CchHHHHHHHHHHHHHh
Confidence 8888888888888776 2233 567777788888888888888888888888877 6777777777777 445
Q ss_pred CCc
Q 011587 444 ERW 446 (482)
Q Consensus 444 g~~ 446 (482)
|+.
T Consensus 319 g~~ 321 (330)
T 3hym_B 319 GDS 321 (330)
T ss_dssp TC-
T ss_pred Cch
Confidence 554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=153.36 Aligned_cols=284 Identities=11% Similarity=-0.010 Sum_probs=233.9
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 181 (482)
+...+......+...| + +++|.++++++.+.. +.+...+..++..+...|++++|..+++++.+ .+...|..+
T Consensus 21 ~~~~~~~~a~~~~~~g-~--~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNC-D--FKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 6677788888888887 8 999999999998874 44566777788888899999999999988753 367788888
Q ss_pred HHHHhcCCccccc-chHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 011587 182 INGYCSQSKKAKD-CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260 (482)
Q Consensus 182 i~~~~~~~~~~~~-~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 260 (482)
...+.. .| ++++|...|++.. ... +.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 97 ~~~~~~-----~~~~~~~A~~~~~~a~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l 165 (330)
T 3hym_B 97 GCYYLM-----VGHKNEHARRYLSKAT--TLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYI 165 (330)
T ss_dssp HHHHHH-----SCSCHHHHHHHHHHHH--TTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHH
T ss_pred HHHHHH-----hhhhHHHHHHHHHHHH--HhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHH
Confidence 888888 88 8999999999986 322 2356788899999999999999999999999887 5567778889
Q ss_pred HHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG--------VKPNAVTFTSLFAA 329 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~ 329 (482)
...|...|++++|...|++..+ .+..++..+...+...|++++|...+++..+.. ......++..+..+
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 9999999999999999998875 367888999999999999999999999887631 13345688889999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH-HhcCCHh
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC-NVHGDVA 405 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~~~ 405 (482)
+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.+++. .+.| +...+..+..++ ...|+.+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999983 3456788999999999999999999999998 6666 677777777777 4556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-18 Score=158.84 Aligned_cols=289 Identities=10% Similarity=-0.071 Sum_probs=225.9
Q ss_pred HHhCCChhHHHH-HhccCCC-----C--CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHH
Q 011587 154 YASNKDISSGKK-VFDQMPM-----R--SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225 (482)
Q Consensus 154 ~~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~ 225 (482)
+...|++++|.+ .|++... | +...+..+...+.. .|++++|+..|+++. .. .+.+..++..+..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~al--~~-~p~~~~~~~~l~~ 106 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-----EGDLPNAVLLFEAAV--QQ-DPKHMEAWQYLGT 106 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-----TTCHHHHHHHHHHHH--HS-CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-----CCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHH
Confidence 334578888888 7775542 1 35678888999999 999999999999997 32 2346778999999
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHH------------
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTA------------ 290 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~------------ 290 (482)
++...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.+ | +...+..
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred HHHHCcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccH
Confidence 9999999999999999999987 66888999999999999999999999998874 2 2222211
Q ss_pred ---HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 291 ---MATGMAIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 291 ---li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.+..+...|++++|...|+++.+..... +..++..+...+.+.|++++|...++++.+. .+.+...+..+...+
T Consensus 184 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATL 261 (368)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHH
Confidence 2333448899999999999998864321 5788999999999999999999999999983 345678999999999
Q ss_pred hccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccc---cccCCchhHHHHHHHHH
Q 011587 367 GRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV---DVACTSEDFVALSNIYA 441 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 441 (482)
...|++++|.+.|++. ...| +..++..+...|...|++++|...++++++..|+...+ .......+|..+..+|.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999987 3344 67889999999999999999999999999987721000 00012688999999999
Q ss_pred hCCCchHHHHHHHH
Q 011587 442 SAERWPDVESVRKQ 455 (482)
Q Consensus 442 ~~g~~~~a~~~~~~ 455 (482)
+.|++++|..++++
T Consensus 342 ~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 342 MLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCGGGHHHHHTT
T ss_pred HhCChHhHHHhHHH
Confidence 99999999988763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-18 Score=158.00 Aligned_cols=285 Identities=10% Similarity=-0.064 Sum_probs=222.1
Q ss_pred CChhHHHHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchH
Q 011587 158 KDISSGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234 (482)
Q Consensus 158 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 234 (482)
+....+...+..... .+...|..+...+.+ .|++++|+..|+++. .. .+.+..++..+...+...|+++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~al--~~-~p~~~~~~~~lg~~~~~~g~~~ 116 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLK-----EGDLPVTILFMEAAI--LQ-DPGDAEAWQFLGITQAENENEQ 116 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHH-----HTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHH-----CCCHHHHHHHHHHHH--Hh-CcCCHHHHHHHHHHHHHCCCHH
Confidence 333444444444332 256678889999999 999999999999997 32 2346789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC-----------HHHHHHHHHHHHhcCCh
Q 011587 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN-----------VLTWTAMATGMAIHGKG 301 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~~~~ 301 (482)
+|...++++.+.. +.+..++..+...|...|++++|...|+++.+ |+ ...+..+...+...|++
T Consensus 117 ~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 117 AAIVALQRCLELQ---PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHH
T ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhH
Confidence 9999999999987 67888999999999999999999999999875 21 22344567889999999
Q ss_pred HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 302 NEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
++|..+++++.+.... ++..++..+...+...|++++|...++++.+. .+.+..+|..+...|...|++++|.+.|+
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999886432 26788999999999999999999999999983 45578899999999999999999999999
Q ss_pred cC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccc----ccCCchhHHHHHHHHHhCCCchHHHHHHH
Q 011587 381 GI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD----VACTSEDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 381 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
+. ...| +..++..+..+|...|++++|...++++++..|+..... ...+...|..+..++...|+.+.+..+.+
T Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 272 RALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88 4445 588899999999999999999999999999876321100 01147889999999999999999888765
Q ss_pred H
Q 011587 455 Q 455 (482)
Q Consensus 455 ~ 455 (482)
+
T Consensus 352 ~ 352 (365)
T 4eqf_A 352 G 352 (365)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-15 Score=144.63 Aligned_cols=215 Identities=9% Similarity=-0.016 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc-------CCChH-------HHHHHHHhccC---C-CHHHHHHHHHHH
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSK-------CGCLD-------NALLIFSRMRE---K-NVLTWTAMATGM 295 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~ 295 (482)
..+..+|++++... +.+...|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+
T Consensus 255 ~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 36778899998876 6788899999988876 79987 89999999874 4 578899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH-HhccCCH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPN--AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL-LGRAGHL 372 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 372 (482)
.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+.++|..+|++..+. .+.+...|...... +...|+.
T Consensus 332 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCH
T ss_pred HhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCCh
Confidence 9999999999999999985 444 247888888888999999999999999873 22233333332222 3468999
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (482)
++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...+.- .......|...+....+.|+.+.+.
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~----~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP----PEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC----GGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999977 3334 67889999999999999999999999999987610 0012337878888888999999999
Q ss_pred HHHHHhHhc
Q 011587 451 SVRKQMKVK 459 (482)
Q Consensus 451 ~~~~~m~~~ 459 (482)
.+.+++.+.
T Consensus 484 ~~~~r~~~~ 492 (530)
T 2ooe_A 484 KVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-17 Score=150.05 Aligned_cols=282 Identities=10% Similarity=0.007 Sum_probs=132.2
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHH
Q 011587 57 QSTKIVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132 (482)
Q Consensus 57 ~~~~~a~~~~~~~~~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 132 (482)
|++++|.+.++.+..|+ .|..+..+ |++++|++.|.+. + |..+|..++.++...| . +++|...+
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~-D~~~y~~V~~~ae~~g-~--~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------D-DPSSYMEVVQAANTSG-N--WEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------C-CHHHHHHHHHHHHhCC-C--HHHHHHHH
Confidence 77888888888886664 67777776 8888888888542 3 7778888999888888 8 99999988
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCC
Q 011587 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212 (482)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 212 (482)
+..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|.. .|++++|...|..+.
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~-----~g~yeeA~~~Y~~a~----- 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYD-----EKMYDAAKLLYNNVS----- 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C---------------------CTTTHHHHHHHTT-----
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHH-----cCCHHHHHHHHHHhh-----
Confidence 777764 45577888899999999999998888864 677799999999999 999999999999763
Q ss_pred CCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHH
Q 011587 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292 (482)
Q Consensus 213 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 292 (482)
.|..+..++.+.|++++|.+.+.++ + ++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 150 ------n~~~LA~~L~~Lg~yq~AVea~~KA---~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv 214 (449)
T 1b89_A 150 ------NFGRLASTLVHLGEYQAAVDGARKA---N-----STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELI 214 (449)
T ss_dssp ------CHHHHHHHHHTTTCHHHHHHHHHHH---T-----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHH
T ss_pred ------hHHHHHHHHHHhccHHHHHHHHHHc---C-----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHH
Confidence 7888999999999999999988877 1 67888999999999999999987777655 3333344688
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc------CHHHHHHHHHHH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP------HIKHYSCIVDLL 366 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~ 366 (482)
..|.+.|++++|..+++...... +-....|+-+.-+|++- ++++..+-++...++.+++| +...|..++-.|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999887654 33556666666666553 33444444443334345555 466788888899
Q ss_pred hccCCHHHHHHHHHcC
Q 011587 367 GRAGHLEEAYNFIMGI 382 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~ 382 (482)
..-++++.|...+-+-
T Consensus 293 ~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 293 DKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HhhchHHHHHHHHHhC
Confidence 9999999887655443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-17 Score=150.46 Aligned_cols=253 Identities=13% Similarity=-0.015 Sum_probs=205.1
Q ss_pred ccchHHHHH-HHHHhhhccC-CCCc--CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC
Q 011587 193 KDCAFNALV-LFRDMLVDVS-GVKP--TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268 (482)
Q Consensus 193 ~~~~~~a~~-~~~~m~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g 268 (482)
.+++++|+. .|++.. .. .-.| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus 38 ~~~~~~a~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 38 LSDYDDLTSATYDKGY--QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp --------CHHHHCCC--CCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHH--hcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCc
Confidence 678888988 888654 21 1112 35668889999999999999999999999887 678889999999999999
Q ss_pred ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHH
Q 011587 269 CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS---------------LFAAC 330 (482)
Q Consensus 269 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------ll~~~ 330 (482)
++++|...|+++.+ .+..++..+..+|...|++++|...++++...... +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998864 47789999999999999999999999999886533 2222211 23334
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
...|++++|...++++.+...-.++..++..+...|...|++++|...+++. ...| +..++..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4889999999999999985222225889999999999999999999999987 3344 6789999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
..++++++..| .+..++..+..+|.+.|++++|...+++..+.
T Consensus 272 ~~~~~al~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQP--------GYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999998 78899999999999999999999999998753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-16 Score=140.75 Aligned_cols=271 Identities=9% Similarity=-0.042 Sum_probs=209.3
Q ss_pred HHHHhCCChhHHHHHhccCCCCC----chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 152 HFYASNKDISSGKKVFDQMPMRS----SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
+.....|++..|+..++.....+ ....-.+.++|.. .|+++.|+..++. .-.|+..++..+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~-----~g~~~~al~~~~~------~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA-----QRKYGVVLDEIKP------SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-----TTCHHHHHHHSCT------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH-----CCCHHHHHHHhcc------cCChhHHHHHHHHHHH
Confidence 44556788888888887765433 2344556788888 8888888865532 2356677888888888
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
...++.++|.+.++++...+.. |.+...+..+..++...|++++|++.+++ ..+..++..++..|.+.|++++|...
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~-P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVD-VTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCC-CSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccC-CCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8889999999999998877632 44667778888999999999999999998 56778899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-C
Q 011587 308 LDSMRDCGVKPNAVTF---TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-P 383 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 383 (482)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. .
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998864 443211 22334445569999999999999984 5678889999999999999999999999987 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 384 IKP-DAILWRSLLSACNVHGDVAL-GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 384 ~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
..| +..++..++..+...|+.++ +.++++++.+..| .++.+ .+...+.+.++++..-
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P--------~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR--------SHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--------TCHHH----HHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------CChHH----HHHHHHHHHHHHHHHH
Confidence 445 77889999999999999876 6789999999998 45443 3344555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-15 Score=142.70 Aligned_cols=308 Identities=10% Similarity=-0.060 Sum_probs=136.3
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhh----ccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh---
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR----FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS--- 156 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 156 (482)
+++++|++.|++..+.| +...+..+-..+.. .+ + +++|...|++..+.| +...+..|..+|..
T Consensus 93 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~-~--~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKV-D--KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC-C--HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCC-C--HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 44555555555555443 33444444444443 22 3 555555555554443 23344444444444
Q ss_pred -CCChhHHHHHhccCCC-CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhc----c
Q 011587 157 -NKDISSGKKVFDQMPM-RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ----L 230 (482)
Q Consensus 157 -~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~----~ 230 (482)
.+++++|.+.|+...+ .+...+..+...|.. |....++.++|+..|++.. ..+ +...+..+...+.. .
T Consensus 163 ~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~-g~g~~~~~~~A~~~~~~a~--~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSR-GLGVERNDAISAQWYRKSA--TSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCCcCHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHcCCCCC
Confidence 4455555555544332 233444444443332 1111344555555555443 222 23344444444433 4
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHHHHHHHHhc-----CC
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTAMATGMAIH-----GK 300 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~ 300 (482)
+++++|...+++..+.+ +...+..+...|.. .+++++|..+|++..+ .+...+..+...|... ++
T Consensus 237 ~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCC
Confidence 45555555555544433 22233344444444 4455555555554443 2334444444444444 45
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHH
Q 011587 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG---LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLE 373 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 373 (482)
+++|...|++..+.| +...+..+...|...| +.++|..+|++..+. .+...+..+...|.. .++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 555555555554443 2233333444443323 445555555555442 133444444444444 44555
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCC
Q 011587 374 EAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 374 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 419 (482)
+|.++|++.--..+...+..|...|.. .++.++|...|+++.+.++
T Consensus 385 ~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 385 QAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 555555444111234444444444444 4555555555555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-17 Score=149.55 Aligned_cols=269 Identities=10% Similarity=-0.068 Sum_probs=218.2
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
+...+..+...+.. .|++++|+.+|+++. .. .+.+...+..+..++...|++++|...++++.+.. +.+
T Consensus 20 ~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLK-----LANLAEAALAFEAVC--QA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKD 88 (327)
T ss_dssp GSSCHHHHHHHHHH-----TTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred hhHHHHHHHHHHHH-----hccHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCC
Confidence 44566777788888 999999999999986 32 23367788889999999999999999999999987 668
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhCC
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAM--------------AT-GMAIHGKGNEAIRLLDSMRDCG 315 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g 315 (482)
..++..+...|...|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 88899999999999999999999998864 2 22223222 22 3778899999999999998864
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHH
Q 011587 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRS 393 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 393 (482)
. .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..
T Consensus 169 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (327)
T 3cv0_A 169 P-NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245 (327)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3 37788999999999999999999999999983 3456788999999999999999999999987 3334 6788999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccc----cCCchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDV----ACTSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
+...+...|++++|...++++.+..|+....+- ..+..++..+..++.+.|++++|..++++.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999998882100000 005788999999999999999999988654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-17 Score=152.44 Aligned_cols=231 Identities=13% Similarity=0.003 Sum_probs=196.0
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
+...+..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|+..|+++.+ .+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45568889999999999999999999999987 67899999999999999999999999999874 4678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPN-----------AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 361 (482)
.+|...|++++|...|+++.+.. |+ ...+..+...+...|++++|..+++++.+...-.++...+..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999998753 22 223344578889999999999999999985222226889999
Q ss_pred HHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 362 IVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
+...|...|++++|.+.|++. ...| +..+|..+..+|...|++++|...++++++..| .+..++..+..+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~ 290 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP--------GFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CchHHHHHHHHH
Confidence 999999999999999999988 3334 688999999999999999999999999999998 789999999999
Q ss_pred HHhCCCchHHHHHHHHhHhc
Q 011587 440 YASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~ 459 (482)
|.+.|++++|...+++..+.
T Consensus 291 ~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999998753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-15 Score=144.46 Aligned_cols=335 Identities=11% Similarity=-0.032 Sum_probs=238.3
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhh----ccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh---
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR----FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS--- 156 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 156 (482)
+++++|++.|+...+.| +...+..+-..|.. .+ + .++|.+.|++..+.| ++..+..|...|..
T Consensus 57 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~-~--~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 126 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQ-D--YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNG 126 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC-C--HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred cCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCC-C--HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 67777888888877765 66677777777766 55 6 888888888888765 55667777778877
Q ss_pred -CCChhHHHHHhccCCCC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhc----c
Q 011587 157 -NKDISSGKKVFDQMPMR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ----L 230 (482)
Q Consensus 157 -~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~----~ 230 (482)
.+++++|...|+...+. +...+..+...|.. |....+++++|++.|++.. ..+ +...+..+...+.. .
T Consensus 127 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~-g~g~~~d~~~A~~~~~~a~--~~~---~~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 127 VKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFE-GDGVTRDYVMAREWYSKAA--EQG---NVWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH--HCC---CHHHHHHHHHHHhcCCCCC
Confidence 78888888888876543 56666666666654 1111567888888888876 443 56777777777776 7
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHHHHHHHHh----cCCh
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTAMATGMAI----HGKG 301 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~ 301 (482)
++.++|.+.+++..+.+ +...+..+...|.. .+++++|..+|++..+ .+...+..+...|.. .+++
T Consensus 201 ~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG-----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCH
T ss_pred cCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH
Confidence 88888888888888765 44566777777775 7788888888888765 456677777777777 7888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC---CHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA-----GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG---HLE 373 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 373 (482)
++|...|++..+.| +...+..+...|... ++.++|...|++..+. + +...+..+...|...| +.+
T Consensus 276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHH
Confidence 88888888887765 445566666777665 7888888888888873 3 4456677777777655 678
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH--hCCCch
Q 011587 374 EAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA--SAERWP 447 (482)
Q Consensus 374 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~ 447 (482)
+|.++|++.--..+...+..+...|.. .+++++|...|+++.+.+. +........+-... -.++++
T Consensus 349 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 349 KAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--------SAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHcCCCCCCCHH
Confidence 888888877212467777778878877 7888888888888888766 44433333333222 255666
Q ss_pred HHHHHHH
Q 011587 448 DVESVRK 454 (482)
Q Consensus 448 ~a~~~~~ 454 (482)
+|...++
T Consensus 421 ~A~~~~~ 427 (490)
T 2xm6_A 421 QAWAWFD 427 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=169.99 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=130.6
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhcc-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMR-------EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 323 (482)
.....+|++||++||+.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3356789999999999999999999997764 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCC------HHHHHHH
Q 011587 324 TSLFAACCHAGL-VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPD------AILWRSL 394 (482)
Q Consensus 324 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~------~~~~~~l 394 (482)
+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++.+..+.+ .++.++++ +++|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHH
Confidence 999999999998 47899999999996 99999999999997766653 44444444 33332 4455556
Q ss_pred HHHHHhcC---------CHhHHHHHHHHHHh
Q 011587 395 LSACNVHG---------DVALGEKVGKILLQ 416 (482)
Q Consensus 395 ~~~~~~~g---------~~~~a~~~~~~~~~ 416 (482)
...|.+.+ ..++-...|++-+.
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~ 309 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 66677655 24555666666543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-16 Score=143.10 Aligned_cols=286 Identities=8% Similarity=-0.030 Sum_probs=133.9
Q ss_pred hhhHHHHHHHhccCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC---
Q 011587 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC--- 83 (482)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~--- 83 (482)
......+|..+ |++++|.+..+.+ +++.++..+..++... |++++|.+.|.+. +|...|..++.+
T Consensus 6 ~~a~~~ll~~~-~~ld~A~~fae~~------~~~~vWs~La~A~l~~---g~~~eAIdsfika--~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 6 TSAVQVLIEHI-GNLDRAYEFAERC------NEPAVWSQLAKAQLQK---GMVKEAIDSYIKA--DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-cCHHHHHHHHHhC------CChHHHHHHHHHHHHc---CCHHHHHHHHHcC--CCHHHHHHHHHHHHh
Confidence 34566788888 9999999999888 3345888999999999 9999999999765 566678777777
Q ss_pred -CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 011587 84 -TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162 (482)
Q Consensus 84 -~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 162 (482)
|++++|+.+++..++. .+ ++.+.+.++.+|.+.| + ++++.++++ .|+..+|..+...|...|++++
T Consensus 74 ~g~~EeAi~yl~~ark~--~~-~~~i~~~Li~~Y~Klg-~--l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--AR-ESYVETELIFALAKTN-R--LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ---------------------------------------C--HHHHTTTTT-------CC----------------CTTT
T ss_pred CCCHHHHHHHHHHHHHh--Cc-cchhHHHHHHHHHHhC-C--HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 9999999988777764 34 6788999999999999 8 999998885 4777899999999999999999
Q ss_pred HHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHH
Q 011587 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242 (482)
Q Consensus 163 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (482)
|..+|..+ ..|..++.++.+ .|++++|++.++++. ++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a-----~n~~~LA~~L~~-----Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 141 AKLLYNNV-----SNFGRLASTLVH-----LGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHT-----TTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHh-----hhHHHHHHHHHH-----hccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999987 489999999999 999999999999873 789999999999999999999654443
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC
Q 011587 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRD-CGVKP 318 (482)
Q Consensus 243 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p 318 (482)
+ ...+.....++..|.+.|.+++|..+++.... .....|+-|.-+|++- ++++.++.++.... -+++|
T Consensus 203 -----L--~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 203 -----I--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp -----T--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHH
T ss_pred -----H--HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcH
Confidence 2 22344455799999999999999999998874 3567888888887765 45555555443322 22333
Q ss_pred ------CHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 319 ------NAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 319 ------~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
+...|.-+...|.+.++++.|....
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 4566788888888889999887753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=147.25 Aligned_cols=349 Identities=9% Similarity=-0.079 Sum_probs=195.6
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh-----C---CCCchhHHHHHHHHHHhCCChhHHHHHhccCC-----
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-----G---FMFNVLVATTLIHFYASNKDISSGKKVFDQMP----- 171 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 171 (482)
....|+.+-..+...| + .++|.+.|++.++. + .+....+|+.+..+|...|++++|...|++..
T Consensus 50 ~a~~yn~Lg~~~~~~G-~--~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKG-Q--NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CCHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3456777777777766 6 88888777776542 1 12234567777778888888888777776542
Q ss_pred --CC----CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHH---hhccCchHHHHHHHH
Q 011587 172 --MR----SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSV---SSQLGLLEFGACVHG 241 (482)
Q Consensus 172 --~~----~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~---~~~~~~~~~a~~~~~ 241 (482)
.+ ...+++.+..++...+ .+++++|+..|++.. .+.|+ ...+..+..+ +...++.++|.+.++
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~---~~~y~~A~~~~~kal----~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCG---GNQNERAKVCFEKAL----EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHC---TTHHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHc---cccHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 11 2344554444444311 456778888887765 22343 3344333333 344566677777777
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 242 YMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
+.++.. +.+..++..+...+.. .|++++|.+++++..+ .+..++..+...|...|++++|...+++..+.
T Consensus 200 ~al~l~---p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 200 QAIRLN---PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHC---SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhcC---CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 777766 4555665555544443 3566777777776643 35567777777788888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHhc-------------------cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 011587 315 GVKPNAVTFTSLFAACCH-------------------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 315 g~~p~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 375 (482)
... +..++..+..+|.. .+..+.|...+++..+. .+.+...+..+...|...|++++|
T Consensus 277 ~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 277 IPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp STT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred CCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHH
Confidence 322 44455555444432 12345666666666652 233445666777777888888888
Q ss_pred HHHHHcC-CCCCCHHH----HHHHHH-HHHhcCCHhHHHHHHHHHHhcCCCccc----------------ccccCCchhH
Q 011587 376 YNFIMGI-PIKPDAIL----WRSLLS-ACNVHGDVALGEKVGKILLQLQPEVTF----------------VDVACTSEDF 433 (482)
Q Consensus 376 ~~~~~~~-~~~p~~~~----~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 433 (482)
.+.|++. ...|+... +..+.. .....|++++|...|+++++..++-.. ..-+.+..+|
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 8877765 33343321 222222 234567777777777777665442100 0001578899
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccE
Q 011587 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469 (482)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 469 (482)
..+..+|...|++++|.+.+++..+.+-......+|
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999999998776544444444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-15 Score=136.34 Aligned_cols=241 Identities=11% Similarity=0.045 Sum_probs=199.1
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTD--TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.|++..|+..++... ...|+. .....+.+++...|+++.|...++. . . +++..++..+...+...|+.
T Consensus 12 ~g~y~~ai~~~~~~~----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~--~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 12 IGSYQQCINEAQRVK----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-S--APELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp TTCHHHHHHHHHHSC----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-S--CHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHhcc----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-C--ChhHHHHHHHHHHHcCCCcH
Confidence 899999999998875 334543 3556678999999999999876644 2 2 55888899999999999999
Q ss_pred HHHHHHHHhccC----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 271 DNALLIFSRMRE----K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 271 ~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998752 4 566777788999999999999999988 45788899999999999999999999999
Q ss_pred hHHhcCCCcCHHH---HHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 346 MKSKWGVEPHIKH---YSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 346 ~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|+..++++++..|
T Consensus 156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p- 231 (291)
T 3mkr_A 156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS- 231 (291)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 9984 354321 122334455669999999999998 3345888999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHhCCCchH-HHHHHHHhHhcC
Q 011587 421 VTFVDVACTSEDFVALSNIYASAERWPD-VESVRKQMKVKR 460 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 460 (482)
.++.++..++..+...|+.++ +.++++++.+.+
T Consensus 232 -------~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 -------GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 799999999999999999976 578888877544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.5e-16 Score=140.90 Aligned_cols=258 Identities=12% Similarity=-0.002 Sum_probs=183.6
Q ss_pred hhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHHHH
Q 011587 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAMIN 183 (482)
Q Consensus 107 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 183 (482)
..+......+...+ + +++|..+++++.+.. +.+..++..+...+...|++++|.+.|+++.+ .+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~-~--~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLA-N--LAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-c--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 44556666677777 7 888888888888764 44677788888888888998888888887652 36677888888
Q ss_pred HHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHH--------------HH-HhhccCchHHHHHHHHHHHHhC
Q 011587 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCV--------------LS-VSSQLGLLEFGACVHGYMEKTF 247 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~ 247 (482)
.+.. .|++++|+..++++. .. .|+ ...+..+ .. .+...|++++|...++++.+..
T Consensus 98 ~~~~-----~~~~~~A~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 98 SHTN-----EHNANAALASLRAWL--LS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp HHHH-----TTCHHHHHHHHHHHH--HT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred HHHH-----cCCHHHHHHHHHHHH--Hh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888 888889999888876 22 232 2222222 22 3667788888888888888776
Q ss_pred CCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 011587 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324 (482)
Q Consensus 248 ~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 324 (482)
+.+...+..+...|...|++++|...++++.+ .+..+|..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 169 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 244 (327)
T 3cv0_A 169 ---PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMY 244 (327)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 55777788888888888888888888877653 345677777777788888888888887776653 23566677
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCc-----------CHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEP-----------HIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 325 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.+...+...|++++|...++++.+. .-.. +...+..+..++.+.|+.++|..++++.
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777778888888777777663 1110 3556677777777777777777776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=165.53 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRD---CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 361 (482)
..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+. |+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 46999999999999999999999988764 589999999999999999999999999999999995 99999999999
Q ss_pred HHHHHhccCCH-HHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccc-cccCCchhHHHH
Q 011587 362 IVDLLGRAGHL-EEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV-DVACTSEDFVAL 436 (482)
Q Consensus 362 li~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 436 (482)
+|.++++.|+. ++|.++|++| |+.||..+|++++.++.+. .+++.+.+..|+..-+ .-.|...+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCCCCCCcccccchHHH
Confidence 99999999985 7899999999 9999999999988654433 4444444545432110 001224455567
Q ss_pred HHHHHhCC
Q 011587 437 SNIYASAE 444 (482)
Q Consensus 437 ~~~~~~~g 444 (482)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 77777665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-13 Score=140.64 Aligned_cols=377 Identities=12% Similarity=0.033 Sum_probs=274.9
Q ss_pred CChhhHHHHHHHhccCcchHHHHHHHHHHhcCC--CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-CCC-----hhh
Q 011587 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-PPN-----LFL 76 (482)
Q Consensus 5 p~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~~-----~~~ 76 (482)
-|+..|+.+|... . +.=+++.++-....++ .++.-....+..|... |.+.+|.++++... .|+ ...
T Consensus 951 ~d~~lW~~vl~~~-n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a---glp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 951 KDPELWGSVLLES-N--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred cCHHHHHHHhcCC-c--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhC---CCHHHHHHHHHHHHcCCCcccccHHH
Confidence 4555666666443 2 2223444443333322 3344456778888888 99999999999877 333 234
Q ss_pred HHHHhcC---CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 011587 77 FNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF 153 (482)
Q Consensus 77 ~~~ll~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (482)
-|.++.. -+..+..++.+..... + ..-+...+...+ . +++|..+|++.. ......+.++.
T Consensus 1025 qnlLi~tAIkaD~~Rv~eyI~kLd~~-----d---~~eIA~Iai~lg-l--yEEAf~IYkKa~-----~~~~A~~VLie- 1087 (1630)
T 1xi4_A 1025 QNLLILTAIKADRTRVMEYINRLDNY-----D---APDIANIAISNE-L--FEEAFAIFRKFD-----VNTSAVQVLIE- 1087 (1630)
T ss_pred HHHHHHHHHHhChhhHHHHHHHhhhc-----c---HHHHHHHHHhCC-C--HHHHHHHHHHcC-----CHHHHHHHHHH-
Confidence 4545444 5556666665555422 2 233556667777 7 999999999862 12222333433
Q ss_pred HHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch
Q 011587 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233 (482)
Q Consensus 154 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~ 233 (482)
..+++++|.++.++.. +..+|..+..++.. .|++++|++.|.+. -|...|..++.++.+.|++
T Consensus 1088 --~i~nldrAiE~Aervn--~p~vWsqLAKAql~-----~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1088 --HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQ-----KGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred --HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHh-----CCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCH
Confidence 6788999999998774 57788899999999 99999999999764 3778888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
+++.+++....+..- +....+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|...
T Consensus 1151 EEAIeyL~mArk~~~----e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKAR----ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHHHhhcc----cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 999999998877653 2223345889999999988655443 4566777778899999999999999999984
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHH
Q 011587 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393 (482)
Q Consensus 314 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 393 (482)
..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..+...+..
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLee 1285 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEE 1285 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHH
Confidence 478899999999999999999988773 457888889999999999999887764 4456666778
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC--CCchHHHHHHH
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA--ERWPDVESVRK 454 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 454 (482)
++..|.+.|.+++|..+++..+..++ .+...|.-|..+|++. ++..++.++|.
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~Ler--------aH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLER--------AHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCh--------hHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 89999999999999999999988887 6777887777777664 34555555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-13 Score=139.57 Aligned_cols=383 Identities=8% Similarity=0.030 Sum_probs=282.5
Q ss_pred hhhHHHHHHHhc--cCcchHHHHHHHHHHhc--CCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChh-hHHHHh
Q 011587 7 HRCFALLKLKAI--TTPSHIKQIHAQLITNA--LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLF-LFNTLI 81 (482)
Q Consensus 7 ~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ll 81 (482)
+.-...+.++.. |.+.++.++++.....+ +..+....++++....+. +.....+.......-+.. .-..++
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka----D~~Rv~eyI~kLd~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA----DRTRVMEYINRLDNYDAPDIANIAI 1060 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh----ChhhHHHHHHHhhhccHHHHHHHHH
Confidence 333444444444 88999999999988443 234456667766666554 445555555554433322 234444
Q ss_pred cCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
..|.+++|.++|++... .....+.++. ..+ + +++|.++.++. -++.+|..+..++.+.|+++
T Consensus 1061 ~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~-n--ldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV------NTSAVQVLIE---HIG-N--LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred hCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHh-h--HHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 44999999999999632 3333444543 444 6 99999998865 24778999999999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHH
Q 011587 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241 (482)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 241 (482)
+|.+.|... .|...|.-++.++.+ .|++++|++.|...+ ... +++...+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~-----lGkyEEAIeyL~mAr--k~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANT-----SGNWEELVKYLQMAR--KKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--hhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999764 688888999999999 999999999999876 333 44333445899999999988655443
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 011587 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 321 (482)
+ .++...+..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. -+..
T Consensus 1191 ---~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1191 ---N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred ---h-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 1 335567778999999999999999999985 58999999999999999999999987 2568
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
+|..+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+++++.. ++.| ....|+-+...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 99999999999999999988765432 35678889999999999999999999776 5555 4456666666666
Q ss_pred hc--CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHH
Q 011587 400 VH--GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451 (482)
Q Consensus 400 ~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 451 (482)
+. ++..++.+.|..-....+ -....-+...|.-++..|.+.|+++.|..
T Consensus 1326 Ky~peklmEhlk~f~~rini~k---~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPK---VLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccch---HhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 53 455556666653332211 00011256789999999999999999984
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-13 Score=133.98 Aligned_cols=179 Identities=10% Similarity=0.038 Sum_probs=144.5
Q ss_pred HHHHHHHHhccC---CCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 011587 271 DNALLIFSRMRE---KNVLTWTAMATGMAI-------HGKGN-------EAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333 (482)
Q Consensus 271 ~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 333 (482)
+.|..+|++... .+...|...+..+.+ .|+++ +|..+|++..+.-.+-+...+..++..+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 377788888874 367788888888775 79987 8999999998632233577888899999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCcC-H-HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHH-HHhcCCHhHHH
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPH-I-KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSA-CNVHGDVALGE 408 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~a~ 408 (482)
|++++|..+|+++.+. .|+ . ..|..++..+.+.|+.++|.++|++. ...|+ ...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999983 443 2 58899999999999999999999988 44443 3333322222 34689999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+|+++++..| .+...+..++..+.+.|+.++|..+|++....+
T Consensus 412 ~~~e~al~~~p--------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 412 KIFELGLKKYG--------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHT--------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCC--------CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999999988 688999999999999999999999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-14 Score=138.30 Aligned_cols=360 Identities=7% Similarity=-0.084 Sum_probs=231.5
Q ss_pred CCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-----------CCC-hhhHHHHhcC----CCCccHHHHHHHHHHC
Q 011587 36 LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-----------PPN-LFLFNTLIRC----TPPQDSVLVFAYWVSK 99 (482)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-----------~~~-~~~~~~ll~~----~~~~~a~~~~~~m~~~ 99 (482)
.......++.+..++... |++++|++.|+.-. .|+ ..+|+.+-.. |++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~---G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLK---GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp ---CCHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 344567789999999998 99999999887532 222 3455544333 9999999999988652
Q ss_pred C------CCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHH---HHhCCChhHHHHHhccC
Q 011587 100 G------LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF---YASNKDISSGKKVFDQM 170 (482)
Q Consensus 100 ~------~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~ 170 (482)
. ..+....++...-.++...+ .+++++|.+.|++.++.. +-++..+..+..+ +...++.++|++.|++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCG-GNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1 11213456666666666666 555999999999999874 3345555555544 44567888888888765
Q ss_pred C---CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhC
Q 011587 171 P---MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247 (482)
Q Consensus 171 ~---~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (482)
. ..+..++..+...+...+.. .+++++|.+.+++.. . ..+.+...+..+...+...|++++|...++++.+..
T Consensus 202 l~l~p~~~~~~~~l~~~~~~~~~~-~~~~~~a~~~~~~al--~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHKMREE-GEEEGEGEKLVEEAL--E-KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCC-------CHHHHHHHHHH--H-HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhcCCcchHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH--H-hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 4 23555666665555443222 577889999999875 2 223466788899999999999999999999999887
Q ss_pred CCCCCchhHHHHHHHHHHcC-------------------CChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHH
Q 011587 248 YMPENDVFIGTALVDMYSKC-------------------GCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 248 ~~p~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 305 (482)
|.+..++..+...|... +.++.|...|++..+ .+..++..+...|...|++++|+
T Consensus 278 ---p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 278 ---PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred ---CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence 66777787777766432 234567777766653 35567888899999999999999
Q ss_pred HHHHHHHhCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 306 RLLDSMRDCGVKPNAV--TFTSLFA-ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
..|++..+....|... .+..+.. .....|+.++|...|.+..+- .|+.......+ ..+.++++..
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~---------~~l~~~~~~~ 422 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK---------DKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH---------HHHHHHHHHH
Confidence 9999988765443321 2222222 234678999999999988872 44433222222 2233333333
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 -PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 -~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.. +.+..+|..+...|...|++++|.+.|+++++.++
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 22 33677899999999999999999999999999888
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-14 Score=125.59 Aligned_cols=221 Identities=7% Similarity=-0.070 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C-------HH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N-------VL 286 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~ 286 (482)
...+..+...+...|++++|...++++.+.. + +...+..+...|...|++++|...+++..+ | + ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--K--DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4577888899999999999999999999887 3 678889999999999999999999998874 2 1 57
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
+|..+...|...|++++|...|++..+. .|+. ..+.+.|++++|...++++.. ..+.+...+..+...+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHH
Confidence 8899999999999999999999999885 3443 345667899999999999988 3445677888999999
Q ss_pred hccCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 367 GRAGHLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
...|++++|.+.+++. ... .+..++..+...+...|++++|...++++++..| .+...+..+..++.+.|
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--------NFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--------HHHHHHHHHHHHHHHHh
Confidence 9999999999999988 333 3688899999999999999999999999999998 78899999999999999
Q ss_pred CchHHHHHHHHhHhcC
Q 011587 445 RWPDVESVRKQMKVKR 460 (482)
Q Consensus 445 ~~~~a~~~~~~m~~~~ 460 (482)
++++|...+++..+..
T Consensus 222 ~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 222 EYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999887543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=123.49 Aligned_cols=196 Identities=12% Similarity=-0.012 Sum_probs=146.4
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
|++...+..+...+.+.|++++|...|++..+ .+...+..+..++.+.|++++|+..|++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 34666777777788888888888888887754 3566777778888888888888888888777642 2566777777
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHH
Q 011587 328 AACCHA-----------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLL 395 (482)
Q Consensus 328 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 395 (482)
.++... |++++|...+++..+. -+-+...+..+...|...|++++|+..|++. .+..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 9999999999999883 3446778888999999999999999999887 1116788889999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.++...|++++|...++++++..| .+...+..+..++.+.|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP--------KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999 788999999999999999999999888754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=128.56 Aligned_cols=225 Identities=9% Similarity=-0.045 Sum_probs=190.0
Q ss_pred chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc-
Q 011587 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND- 253 (482)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 253 (482)
...|..+...+.. .|++++|+..|++.. ... .+...+..+..++...|++++|...++++.+......++
T Consensus 5 a~~~~~~g~~~~~-----~~~~~~A~~~~~~a~--~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYK-----ARQFDEAIEHYNKAW--ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHH-----hccHHHHHHHHHHHH--Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 3467778888888 999999999999987 544 778899999999999999999999999998865200111
Q ss_pred ---hhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 254 ---VFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 254 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
..++..+...|...|++++|...|++..+ ++. ..+...|++++|...++++.... +.+...+..+..
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 147 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 67889999999999999999999999875 442 34667788999999999998863 225667888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhH
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVAL 406 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 406 (482)
.+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999983 3556888999999999999999999999988 3334 68889999999999999999
Q ss_pred HHHHHHHHHhcC
Q 011587 407 GEKVGKILLQLQ 418 (482)
Q Consensus 407 a~~~~~~~~~~~ 418 (482)
|...++++.+..
T Consensus 226 A~~~~~~a~~~~ 237 (258)
T 3uq3_A 226 ALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999988
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-14 Score=126.87 Aligned_cols=240 Identities=10% Similarity=-0.062 Sum_probs=194.0
Q ss_pred ccchHHHHHHHHHhhhccCCC--Cc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 193 KDCAFNALVLFRDMLVDVSGV--KP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
.+++++|+..|+++. .... .| +..++..+...+...|++++|...++++.+.. +.+..++..+...|...|+
T Consensus 18 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARMEQIL--ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHH--hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccC
Confidence 789999999999997 4321 22 46688899999999999999999999999987 6688999999999999999
Q ss_pred hHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 270 LDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 270 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
+++|...|++..+ .+..++..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999874 36789999999999999999999999999885 344444445555667779999999999888
Q ss_pred HHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-----AILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 347 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
... .+++...+. ++..+...++.++|.+.+++. ...|. ..++..+...+...|++++|...++++++..|
T Consensus 171 ~~~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p- 246 (275)
T 1xnf_A 171 FEK--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV- 246 (275)
T ss_dssp HHH--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred Hhc--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc-
Confidence 874 344444444 677788888999999999877 33332 57788899999999999999999999999887
Q ss_pred cccccccCCchhHHHHHHHHHhCCCchHHHHHH
Q 011587 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVR 453 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (482)
.+...+ ..++...|++++|.+.+
T Consensus 247 -------~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 -------HNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp -------TTCHHH---HHHHHHHHHHHHC----
T ss_pred -------hhHHHH---HHHHHHHHHHHhhHHHH
Confidence 454443 55677788888887765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-13 Score=119.03 Aligned_cols=198 Identities=13% Similarity=-0.034 Sum_probs=174.5
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMAT 293 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 293 (482)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHH
Confidence 5678888899999999999999999999887 66788999999999999999999999998864 46788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
.|...|++++|..+++++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999998843444 4567888889999999999999999999984 345678899999999999999
Q ss_pred HHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 373 EEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 373 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++|.+.+++. ... .+...+..+...+...|+.++|.+.++++.+..|
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999987 334 4677888888999999999999999999999988
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-14 Score=122.58 Aligned_cols=212 Identities=13% Similarity=0.051 Sum_probs=164.4
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTA 290 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 290 (482)
......+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+ .+..++..
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 96 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96 (243)
T ss_dssp ----------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH
Confidence 3455677888888999999999999999999876 66788999999999999999999999998864 46788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcC
Confidence 9999999999999999999998864 346778888999999999999999999999883 3456788999999999999
Q ss_pred CHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 371 HLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
++++|.+.+++. ... .+..++..+...+...|++++|...++++.+..| .+...+..+...
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~~~l 236 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP--------DHMLALHAKKLL 236 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT--------TCHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc--------chHHHHHHHHHH
Confidence 999999999987 323 4678899999999999999999999999999998 566666555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-13 Score=121.62 Aligned_cols=247 Identities=9% Similarity=-0.062 Sum_probs=176.8
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchh
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 255 (482)
.+......+.. .|++++|+..|++.. .. .| +...+..+..++...|++++|...++++.+.+..|.....
T Consensus 5 ~~~~~a~~~~~-----~~~~~~A~~~~~~~l--~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 75 (272)
T 3u4t_A 5 VEFRYADFLFK-----NNNYAEAIEVFNKLE--AK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75 (272)
T ss_dssp CHHHHHHHHHT-----TTCHHHHHHHHHHHH--HT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred HHHHHHHHHHH-----hcCHHHHHHHHHHHH--Hh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHH
Confidence 34455566777 888888888888876 22 23 4447777888888888888888888888874432222334
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
.+..+...|...|++++|+..|++..+ .+..+|..+...|...|++++|...|++..+.. +.+...+..+...+..
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 578888888888899988888888764 356788888888888999999999988887763 2355666666623344
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC---HHHHHHHHHcC----CCCCC------HHHHHHHHHHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH---LEEAYNFIMGI----PIKPD------AILWRSLLSACN 399 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~ 399 (482)
.+++++|...|+++.+. .+.+...+..+...+...|+ .++|...+++. .-.|+ ..+|..+...|.
T Consensus 155 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 46899999999988873 34446777777888877777 66677666655 11233 256777888899
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
..|++++|...++++++..| .+......+.......
T Consensus 233 ~~~~~~~A~~~~~~al~~~p--------~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDP--------TNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHhcCc--------cHHHHHHHhhhhhccc
Confidence 99999999999999999999 6777666665554433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-13 Score=113.95 Aligned_cols=199 Identities=9% Similarity=-0.062 Sum_probs=173.1
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56678888999999999999999999999987 66788999999999999999999999998864 4677899999
Q ss_pred HHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 293 TGMAIH-GKGNEAIRLLDSMRDCGVKPN-AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 293 ~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcC
Confidence 999999 999999999999988433343 567888889999999999999999999883 3446788999999999999
Q ss_pred CHHHHHHHHHcC-CC-C-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 371 HLEEAYNFIMGI-PI-K-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++++|.+.+++. .. + .+...+..+...+...|+.+.|..+++.+.+..|
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999999999987 22 3 4677788888888999999999999999998887
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-13 Score=116.49 Aligned_cols=191 Identities=15% Similarity=0.052 Sum_probs=87.9
Q ss_pred chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
...+..+...+.. .|++++|+..|++.. ...| +...+..+..++.+.|++++|...++++.+.. |.+
T Consensus 5 ~~~~~~lg~~~~~-----~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~ 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYA-----LGRYDAALTLFERAL----KENPQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRY 72 (217)
T ss_dssp CHHHHHHHHHHHH-----TTCHHHHHHHHHHHH----TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc
Confidence 3444445555555 555555555555543 1222 34455555555555555555555555555554 444
Q ss_pred hhHHHHHHHHHHcC-----------CChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 011587 254 VFIGTALVDMYSKC-----------GCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319 (482)
Q Consensus 254 ~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 319 (482)
...+..+..++... |++++|+..|++..+ | +...|..+..++...|++++|+..|++..+.. .+
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 55555555555555 555555555554432 2 33444444445555555555555555544443 34
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
...+..+..++...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444555555555555555555555442 222344444444455555555555444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=120.15 Aligned_cols=199 Identities=11% Similarity=0.076 Sum_probs=157.4
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
......+..+...+...|++++|..+|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 44567788889999999999999999999864 367889999999999999999999999998864 33678888899
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHh
Q 011587 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 328 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~ 405 (482)
..+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999984 3557788999999999999999999999987 333 47888999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+|...++++.+..+ .+..++..+..+|.+.|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDP--------GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999998 788899999999999999999999999988654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-13 Score=119.31 Aligned_cols=237 Identities=10% Similarity=-0.021 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC----HHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN----VLTWTA 290 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~ 290 (482)
...+......+...|++++|...++++.+.. +.+...+..+...|...|++++|+..+++..+ ++ ..+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 3455667788899999999999999999887 56777889999999999999999999998875 22 235889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH-HHHhcc
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV-DLLGRA 369 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~ 369 (482)
+...+...|++++|...|++..+... .+...+..+...|...|++++|...+++..+ -.+.+...+..+. ..|. .
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~-~ 155 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYY-N 155 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHH-H
Confidence 99999999999999999999988643 3667889999999999999999999999988 3455677777777 5554 4
Q ss_pred CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 370 GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGD---VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 370 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
+++++|.+.|++. ...| +...+..+...+...|+ +++|...++++.+...+....+......+|..+...|.+.|
T Consensus 156 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 5999999999988 4445 57778888888888888 88899999999887531100000001257888999999999
Q ss_pred CchHHHHHHHHhHhcC
Q 011587 445 RWPDVESVRKQMKVKR 460 (482)
Q Consensus 445 ~~~~a~~~~~~m~~~~ 460 (482)
++++|...+++..+..
T Consensus 236 ~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 236 DKVKADAAWKNILALD 251 (272)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-13 Score=117.13 Aligned_cols=197 Identities=10% Similarity=-0.053 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
...+..+...+...|++++|...|+++.+ .+..++..+...|...|++++|...++++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 67788899999999999999999998864 4678899999999999999999999999988643 3678888899999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
...|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999987 23444 5678888999999999999999999987 3334 688899999999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
...++++.+..+ .+...+..+...+.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGG--------QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCc--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999888 788899999999999999999999999998654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-12 Score=113.14 Aligned_cols=224 Identities=9% Similarity=-0.093 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTA 290 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 290 (482)
+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+ .+..++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56678888889999999999999999998844 45677888999999 9999999999998875 47788888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 291 MATGMAI----HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 291 li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH
Confidence 9999999 999999999999998875 67788888888888 99999999999999984 4 56677888
Q ss_pred HHHHhc----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 363 VDLLGR----AGHLEEAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 363 i~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
...|.. .+++++|.+.|++.--..+...+..+...|.. .+++++|...++++.+.++ ...+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----------~~a~~ 222 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----------GGGCF 222 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----------HHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----------HHHHH
Confidence 888887 89999999999887112356778888888988 9999999999999998765 46778
Q ss_pred HHHHHHHh----CCCchHHHHHHHHhHhcCC
Q 011587 435 ALSNIYAS----AERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 435 ~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 461 (482)
.+...|.+ .+++++|...+++..+.+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88999998 9999999999999877653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-13 Score=124.78 Aligned_cols=246 Identities=11% Similarity=0.050 Sum_probs=205.9
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCc-hHHHHHHHHHHHHhCCCCC
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGL-LEFGACVHGYMEKTFYMPE 251 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~ 251 (482)
+...|+.+...+.. .|++++|+..|++.. .+.| +...|..+..++...|+ +++|...++++++.. +
T Consensus 96 ~~~a~~~lg~~~~~-----~g~~~~Al~~~~~al----~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQR-----DERSERAFKLTRDAI----ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---P 163 (382)
T ss_dssp HHHHHHHHHHHHHH-----TCCCHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---T
T ss_pred hHHHHHHHHHHHHH-----CCChHHHHHHHHHHH----HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---C
Confidence 34578888888888 999999999999987 3445 57788999999999997 999999999999998 7
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
.+...|..+..++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.... +...|+.+..
T Consensus 164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~ 242 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYF 242 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 7899999999999999999999999999974 47789999999999999999999999999987543 7788888999
Q ss_pred HHhc-cCcHHHH-----HHHHHHhHHhcCCCcCHHHHHHHHHHHhccC--CHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 011587 329 ACCH-AGLVEEG-----LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG--HLEEAYNFIMGIPIKP-DAILWRSLLSACN 399 (482)
Q Consensus 329 ~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 399 (482)
++.+ .|..++| ...+++..+. -+-+...|..+...+...| +.++|++.+.++...| +...+..+...|.
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 8888 5665777 5888888873 3446778888999999888 6899999888774445 6778888888888
Q ss_pred hcC---------CHhHHHHHHHHH-HhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 400 VHG---------DVALGEKVGKIL-LQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 400 ~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
+.| .+++|.++++++ .+.+| .....|..+...+..
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP--------~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEKDT--------IRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTTCG--------GGHHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHH
Confidence 864 258999999999 88888 666777777666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-13 Score=126.61 Aligned_cols=225 Identities=10% Similarity=0.026 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHHHHhccC---CCHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC-LDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
...|..+...+...|++++|...++++++.. +.+..+|+.+..++...|+ +++|+..|+++.+ .+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4577888888999999999999999999998 7789999999999999997 9999999999974 4778999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc-cCC
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR-AGH 371 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 371 (482)
.++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+. -+-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999987543 7888999999999999999999999999984 34578899999999998 666
Q ss_pred HHHH-----HHHHHcC-CCCC-CHHHHHHHHHHHHhcC--CHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 372 LEEA-----YNFIMGI-PIKP-DAILWRSLLSACNVHG--DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 372 ~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
.++| ++.+++. .+.| +...|+.+...+...| ++++|.+.+.++ +..+ .+...+..++.+|.+
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p--------~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH--------SSPYLIAFLVDIYED 321 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC--------CCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC--------CCHHHHHHHHHHHHH
Confidence 5777 4777766 4455 6788998888888888 689999999988 7776 678899999999998
Q ss_pred CC---------CchHHHHHHHHh
Q 011587 443 AE---------RWPDVESVRKQM 456 (482)
Q Consensus 443 ~g---------~~~~a~~~~~~m 456 (482)
.| .+++|..+++++
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHH
Confidence 74 358999999998
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-13 Score=127.71 Aligned_cols=376 Identities=8% Similarity=-0.048 Sum_probs=246.6
Q ss_pred HHHHHhcCCCCCChHHHHHHhhcCCCC-ChhhHHHH----hcCCCC---ccHHHHHHHHHHCCCCCCChhhHHHHHHHhh
Q 011587 46 IQLYCTKKASPQSTKIVHFVFTHFDPP-NLFLFNTL----IRCTPP---QDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117 (482)
Q Consensus 46 l~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l----l~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~ 117 (482)
+...+.+. |++++|.++|+....+ +...+..+ ...|+. ++|++.|+...+. .| ..+..+-..+.
T Consensus 9 la~~~~~~---g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~---~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKR---GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SP---RAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CH---HHHHHHHHHHH
Confidence 45556666 9999999999876522 12121111 111666 8999999999864 33 44444444333
Q ss_pred hccC--cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHH---HHhccCC-CCCchhHHHHHHHHhcCCcc
Q 011587 118 RFCS--LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK---KVFDQMP-MRSSATWNAMINGYCSQSKK 191 (482)
Q Consensus 118 ~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~li~~~~~~~~~ 191 (482)
..+. .++.++|...|++..+.|.. ..+..|...|...+..+.+. +.+.... ..+...+..+...|...+..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 3320 12489999999999987732 36777888888777655543 3333332 23677777888888772222
Q ss_pred cccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC---chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC-
Q 011587 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG---LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC- 267 (482)
Q Consensus 192 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~- 267 (482)
....+.+..+++... ...|+ .+..+...+...| +.++|...|++..+.| +.+...+..+...|...
T Consensus 158 -~~~~~~a~~~~~~a~----~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 158 -DQHLDDVERICKAAL----NTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp -GGGHHHHHHHHHHHT----TTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGG
T ss_pred -ccCHHHHHHHHHHHH----cCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCC
Confidence 235555666666553 22333 7888888888899 9999999999999998 56677667788888665
Q ss_pred ---CChHHHHHHHHhccCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----cH
Q 011587 268 ---GCLDNALLIFSRMREKNVLTWTAMATG-M--AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG-----LV 336 (482)
Q Consensus 268 ---g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~ 336 (482)
+++++|..+|++....+...+..+... | ...+++++|...|++..+.| +...+..+...|. .| ++
T Consensus 228 ~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 799999999999884466778888777 4 56899999999999999887 5666777777776 45 99
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGE 408 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 408 (482)
++|...|++.. . | +...+..|...|.. ..+.++|..+|++.--.-+......|...|.. .++.++|.
T Consensus 304 ~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 304 KAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999999887 3 3 56677777777766 44899999999987222344555666666664 56899999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+|+.+.+.|. ++.......+......++.++|..+.++-.+.
T Consensus 379 ~~~~~A~~~g~--------~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 379 VFSQLAKAQDT--------PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHTTCC--------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999888 55444444444444455677888887776543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=111.32 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=173.0
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
+.+...+..+...+...|++++|...|+++.+ .+..++..+...|...|++++|...++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 45677889999999999999999999998864 467789999999999999999999999998864 33677888999
Q ss_pred HHHhcc-CcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCC
Q 011587 328 AACCHA-GLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGD 403 (482)
Q Consensus 328 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 403 (482)
..+... |++++|...++++.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999988 233443 678888999999999999999999987 3334 58889999999999999
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+++|...++++.+..|+ .+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEV-------LQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999998761 466778888888999999999999999987543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=121.10 Aligned_cols=239 Identities=10% Similarity=-0.117 Sum_probs=165.7
Q ss_pred CCCccHHHHHHHHHHCCC--CCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 84 TPPQDSVLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~--~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
|++++|++.|+.+.+... .|.+..++..+...+...| + +++|...++++++.. +.+..++..+..+|...|+++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG-L--RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc-c--HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 677888888888887532 1224566777777777777 7 888888888888874 446778888888888888888
Q ss_pred HHHHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHH
Q 011587 162 SGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238 (482)
Q Consensus 162 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 238 (482)
+|.+.|++..+ .+..+|..+...+.. .|++++|...|+++. . ..|+.......+..+...|++++|..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~--~--~~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYY-----GGRDKLAQDDLLAFY--Q--DDPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHH-----hccHHHHHHHHHHHH--H--hCCCChHHHHHHHHHHHhcCHHHHHH
Confidence 88888887652 357778888888888 888888888888876 2 33444444444555566688888888
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-------VLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
.+....... +.+...+. ++..+...++.++|...+++..+.+ ..+|..+...|...|++++|...|++.
T Consensus 166 ~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 166 VLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcC---CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887777765 33444443 6667777777888888888776532 456777777788888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 312 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
.+.. |+. +.....++...|++++|.+.+
T Consensus 242 l~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 7653 322 222234555666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-13 Score=128.26 Aligned_cols=270 Identities=10% Similarity=-0.028 Sum_probs=201.5
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-H----HHHHHHHHHhhccCchHHHHHHHHHHHHhCC---C
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-D----TTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---M 249 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~ 249 (482)
+..+...+.. .|++++|+..|++.. .. .|+ . ..+..+...+...|++++|...++++.+... .
T Consensus 51 l~~~g~~~~~-----~g~~~~A~~~~~~al--~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 51 LALEGERLCN-----AGDCRAGVAFFQAAI--QA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHH-----TTCHHHHHHHHHHHH--HH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-----hCcHHHHHHHHHHHH--Hh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 3445566777 888889999888887 32 232 2 4677888888999999999999988876510 0
Q ss_pred CCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC---------CHHHHHHHHHHHHhcCC-----------------hHH
Q 011587 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREK---------NVLTWTAMATGMAIHGK-----------------GNE 303 (482)
Q Consensus 250 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~ 303 (482)
++.....+..+...|...|++++|...|++..+- ...++..+...|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 0335667888899999999999999999887631 34578888889999999 999
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHH
Q 011587 304 AIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 304 a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 374 (482)
|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99988876542 1111 2347778888899999999999999998763111112 2377888999999999999
Q ss_pred HHHHHHcC-CCC---C----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 375 AYNFIMGI-PIK---P----DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 375 A~~~~~~~-~~~---p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
|.+.+++. ... . ...++..+...+...|++++|...++++++..++... ......++..+..+|.+.|++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHHHHHHHhccH
Confidence 99998876 111 1 2567788888999999999999999999886542100 002245788899999999999
Q ss_pred hHHHHHHHHhHh
Q 011587 447 PDVESVRKQMKV 458 (482)
Q Consensus 447 ~~a~~~~~~m~~ 458 (482)
++|...+++..+
T Consensus 360 ~~A~~~~~~al~ 371 (411)
T 4a1s_A 360 ERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-11 Score=110.60 Aligned_cols=223 Identities=10% Similarity=-0.080 Sum_probs=192.2
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHhCCC
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ----LGLLEFGACVHGYMEKTFYM 249 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 249 (482)
+..++..+...+.. .+++++|+..|++.. . +.+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~-----~~~~~~A~~~~~~a~--~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYK-----EKDFTQAKKYFEKAC--D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-- 72 (273)
T ss_dssp CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ChHHHHHHHHHHHh-----CCCHHHHHHHHHHHH--H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--
Confidence 55677778888888 899999999999987 4 3356778888889998 999999999999999876
Q ss_pred CCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCH
Q 011587 250 PENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTAMATGMAI----HGKGNEAIRLLDSMRDCGVKPNA 320 (482)
Q Consensus 250 p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~ 320 (482)
+...+..+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|...|++..+.+ +.
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 56778889999999 9999999999998875 477888999999999 999999999999999876 56
Q ss_pred HHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcC-CCCCCHHHH
Q 011587 321 VTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGI-PIKPDAILW 391 (482)
Q Consensus 321 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~ 391 (482)
..+..+...|.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++. ... +...+
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~ 221 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGC 221 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHH
Confidence 677778888887 89999999999999984 3 46778888999999 99999999999987 323 36778
Q ss_pred HHHHHHHHh----cCCHhHHHHHHHHHHhcCC
Q 011587 392 RSLLSACNV----HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 392 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 419 (482)
..+...|.. .+++++|...++++.+.++
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888988 9999999999999999998
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.3e-13 Score=125.48 Aligned_cols=272 Identities=11% Similarity=0.016 Sum_probs=188.6
Q ss_pred chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-C----HHHHHHHHHHhhccCchHHHHHHHHHHHHhCC-
Q 011587 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-T----DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY- 248 (482)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 248 (482)
...+......+.. .|++++|+..|++.. .. .| + ...+..+...+...|+++.|...++++.....
T Consensus 9 ~~~l~~~g~~~~~-----~g~~~~A~~~~~~al--~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 9 CLELALEGERLCK-----SGDCRAGVSFFEAAV--QV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--HH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hccHHHHHHHHHHHH--hc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 3344555666667 788888888888776 32 22 2 34677777888888888888888887655311
Q ss_pred --CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CC----HHHHHHHHHHHHhcCC-----------------
Q 011587 249 --MPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KN----VLTWTAMATGMAIHGK----------------- 300 (482)
Q Consensus 249 --~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~----------------- 300 (482)
.++....++..+...|...|++++|...+++..+ ++ ..++..+...|...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 0122355677788888888888888888887763 12 3477778888888888
Q ss_pred ---hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhc
Q 011587 301 ---GNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGR 368 (482)
Q Consensus 301 ---~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~ 368 (482)
+++|...+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|..
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 88888888776432 2111 2346777778888889999999888887763111122 3377788888889
Q ss_pred cCCHHHHHHHHHcC-CC---CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 369 AGHLEEAYNFIMGI-PI---KPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 369 ~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
.|++++|...+++. .+ .++ ..++..+...+...|++++|...++++.+..++.+. ......++..+..+|
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSLGNAY 317 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHH
Confidence 99999998888766 11 111 457778888888999999999999988876542100 001255777888899
Q ss_pred HhCCCchHHHHHHHHhH
Q 011587 441 ASAERWPDVESVRKQMK 457 (482)
Q Consensus 441 ~~~g~~~~a~~~~~~m~ 457 (482)
.+.|++++|...+++..
T Consensus 318 ~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999998888765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-13 Score=121.90 Aligned_cols=270 Identities=12% Similarity=0.013 Sum_probs=204.5
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-----HHHHHHHHHHhhccCchHHHHHHHHHHHHh----CC
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-----DTTMVCVLSVSSQLGLLEFGACVHGYMEKT----FY 248 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 248 (482)
+......+.. .|++++|+..|++.. .. .|+ ...+..+...+...|++++|...++++.+. +.
T Consensus 8 l~~~g~~~~~-----~g~~~~A~~~~~~al--~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 8 LALEGERLCK-----SGDCRAGVSFFEAAV--QV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHH-----TTCHHHHHHHHHHHH--HH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-----hccHHHHHHHHHHHH--hh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence 3344556677 899999999999987 32 232 357788889999999999999999987654 21
Q ss_pred CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CC----HHHHHHHHHHHHhcCC-------------------
Q 011587 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KN----VLTWTAMATGMAIHGK------------------- 300 (482)
Q Consensus 249 ~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~------------------- 300 (482)
++....++..+...|...|++++|...+++..+ ++ ..++..+...|...|+
T Consensus 79 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 79 -QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 123466788899999999999999999988763 22 3478888899999999
Q ss_pred -hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccC
Q 011587 301 -GNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAG 370 (482)
Q Consensus 301 -~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g 370 (482)
+++|...+++.... +..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...+...|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 99999999876542 1111 2346778888899999999999999998763111111 347888889999999
Q ss_pred CHHHHHHHHHcC-CC---CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 371 HLEEAYNFIMGI-PI---KPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
++++|.+.+++. .+ .++ ..++..+...+...|++++|...++++.+..++.+. ......++..+...|.+
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTA 315 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHH
Confidence 999999998876 11 112 557788888999999999999999999886542100 00124577889999999
Q ss_pred CCCchHHHHHHHHhHhc
Q 011587 443 AERWPDVESVRKQMKVK 459 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~~~ 459 (482)
.|++++|...+++..+.
T Consensus 316 ~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHC
T ss_pred cCChHHHHHHHHHHHHH
Confidence 99999999999988754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-12 Score=121.76 Aligned_cols=342 Identities=10% Similarity=-0.036 Sum_probs=216.0
Q ss_pred hcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchh---hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 011587 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL---WLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157 (482)
Q Consensus 81 l~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (482)
+..|++++|++.|+...+.| +...+..+-..+...| + . ++|...|++..+. ++..+..|...+...
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g-~--~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTR-D--PAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC-----------------------------------CHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccC-C--CCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 33377888888888887765 6777766666666555 4 5 7788888777754 444555566644444
Q ss_pred C-----ChhHHHHHhccCCCC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC
Q 011587 158 K-----DISSGKKVFDQMPMR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 158 g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~ 231 (482)
+ ++++|...|+...++ +...+..|...|...+... . -.++.+.+.... ..| +......+...+...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~-~-~~~a~~~~~~a~--~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSF-P-NVNAQQQISQWQ--AAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGC-T-TCCHHHHHHHHH--HHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-C-CHHHHHHHHHHH--HCC---CHHHHHHHHHHHHcCC
Confidence 4 667788887776543 5556777777776632211 1 133444444443 222 3445556666676666
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC---ChHHHHHHHHhccC---CCHHHHHHHHHHHHhc----CCh
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG---CLDNALLIFSRMRE---KNVLTWTAMATGMAIH----GKG 301 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~ 301 (482)
.++.+......+.+.-. ..++..+..|...|...| +.++|+..|++..+ ++...+..+...|... +++
T Consensus 156 ~~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 156 TYDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp CGGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CcccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 55544444333333222 234447888888998899 88999999988764 3444446677777554 689
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-----CHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAA-C--CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-----HLE 373 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~ 373 (482)
++|...|++.. .| +...+..+... + ...++.++|...|++..+. | +...+..|...|. .| +++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 99999999987 33 44555555555 3 5688999999999999884 5 5667777777777 45 899
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh----CCC
Q 011587 374 EAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS----AER 445 (482)
Q Consensus 374 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 445 (482)
+|.++|++.- .-+...+..|...|.. ..++++|..+|++..+.+. ......|...|.. ..+
T Consensus 305 ~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~----------~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 305 AAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ----------NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp HHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC----------TTHHHHHHHHHHSCTTBCCC
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh----------HHHHHHHHHHHHhCCCCCCC
Confidence 9999999987 6678888888877766 3499999999999988665 4456677777765 458
Q ss_pred chHHHHHHHHhHhcCCc
Q 011587 446 WPDVESVRKQMKVKRVE 462 (482)
Q Consensus 446 ~~~a~~~~~~m~~~~~~ 462 (482)
.++|..+++...+.|..
T Consensus 374 ~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 89999999998887753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-13 Score=128.26 Aligned_cols=207 Identities=8% Similarity=-0.059 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL-DNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLD 309 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 309 (482)
+.+...++...... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+..+|...|++++|...|+
T Consensus 85 ~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444433333 45666777777777777777 777777777653 346677888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc--------CCH
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHA---------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA--------GHL 372 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 372 (482)
+..+.. |+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 887753 5667777888888888 8888888888888873 344577888888888887 888
Q ss_pred HHHHHHHHcC-CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCch
Q 011587 373 EEAYNFIMGI-PIKP----DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (482)
++|++.|++. .+.| +...|..+..+|...|++++|...|+++.+..| .+...+..+..++...|+++
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP--------AWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHH
Confidence 9998888877 4345 778888888899999999999999999999988 67888888888998889888
Q ss_pred HHHHHHHH
Q 011587 448 DVESVRKQ 455 (482)
Q Consensus 448 ~a~~~~~~ 455 (482)
+|.+.+.+
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 88865443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=127.35 Aligned_cols=294 Identities=12% Similarity=0.009 Sum_probs=195.4
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCC--C-C----chhHHHHHHHHhcCCcccccchHHHHHHHHHhhh--ccCCCCc-C
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMPM--R-S----SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV--DVSGVKP-T 216 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~p-~ 216 (482)
+......+...|++++|...|++..+ | + ...|..+...+.. .|++++|...+++... +..+..| .
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-----LHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 33444444445555555555444321 1 1 1234445555555 5555556555554430 0112222 2
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCC--------------------hHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTALVDMYSKCGC--------------------LDNA 273 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~--------------------~~~A 273 (482)
..++..+...+...|++++|...++++.+... .+.....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888889999999988888766431 001124477888889999999 8888
Q ss_pred HHHHHhccC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHH
Q 011587 274 LLIFSRMRE-----K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPN----AVTFTSLFAACCHAGLVEEG 339 (482)
Q Consensus 274 ~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a 339 (482)
...+++..+ . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 888877653 1 235788888899999999999999998764311 112 33778888899999999999
Q ss_pred HHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC-C---CCCC----HHHHHHHHHHHHhcCCHhHH
Q 011587 340 LHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI-P---IKPD----AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a 407 (482)
...+++..+...-..+ ..++..+...|...|++++|.+.+++. . -.++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988763111111 567888899999999999999998876 1 1112 55778888899999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCch
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (482)
...++++.+...+.+. ......++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhH
Confidence 9999998876442100 0123567778888888888663
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-12 Score=104.10 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
+..+|..+...|.+.|++++|+..|++..+.... +...+..+..+|.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3445555666666666666666666665554322 4455555666666666666666666666552 233444555555
Q ss_pred HHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 364 DLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
..+...++++.|.+.+.+. ...| +...+..+...+.+.|++++|.+.|+++++..| .+..++..+..+|.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--------GFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc--------hhhhHHHHHHHHHH
Confidence 5666666666666666555 2222 455566666666666666666666666666666 56666666666666
Q ss_pred hCCCchHHHHHHHHhHh
Q 011587 442 SAERWPDVESVRKQMKV 458 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (482)
+.|++++|...+++..+
T Consensus 153 ~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHh
Confidence 66666666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=126.83 Aligned_cols=269 Identities=12% Similarity=-0.019 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCC--C-Cc----hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCCCc-
Q 011587 146 VATTLIHFYASNKDISSGKKVFDQMPM--R-SS----ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGVKP- 215 (482)
Q Consensus 146 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~p- 215 (482)
.+..+...+...|++++|...|++..+ | +. ..|..+...|.. .|++++|+..+++.... ..+..|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-----LGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344555666777777777777766542 2 22 356667777777 77888888777766510 111122
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCC-----------------hHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTALVDMYSKCGC-----------------LDNALL 275 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~-----------------~~~A~~ 275 (482)
...++..+...+...|++++|...++++.+... .++....++..+...|...|+ +++|..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 445778888899999999999999998876521 003345678889999999999 999998
Q ss_pred HHHhccC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCcHHHHHH
Q 011587 276 IFSRMRE-----K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PN----AVTFTSLFAACCHAGLVEEGLH 341 (482)
Q Consensus 276 ~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~ 341 (482)
.+++..+ . ...++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 8887653 1 2347888889999999999999999988653111 11 2377888889999999999999
Q ss_pred HHHHhHHhcCCC----cCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 011587 342 LFDNMKSKWGVE----PHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 342 ~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
.+++..+...-. ....++..+...|...|++++|.+.+++. +..+ ...++..+...|...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999887631111 12567888899999999999999999876 1111 24577888889999999999999
Q ss_pred HHHHHHhcCC
Q 011587 410 VGKILLQLQP 419 (482)
Q Consensus 410 ~~~~~~~~~~ 419 (482)
.++++.+...
T Consensus 365 ~~~~al~~~~ 374 (411)
T 4a1s_A 365 YAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999998776
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=103.45 Aligned_cols=164 Identities=17% Similarity=0.076 Sum_probs=125.6
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
+..+|..+...|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|...+......... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 566777778888888888888888877763 35667777888888888888888888887765432 55666667777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
+...++++.|...+.+..+. .+.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 77888888888888888773 3446677788888888888888888888877 3344 677788888888888888888
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
...|+++++.+|
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 888888888776
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-11 Score=113.86 Aligned_cols=232 Identities=6% Similarity=-0.021 Sum_probs=181.4
Q ss_pred HHHHHhcCCcccccchHHHHHHHHHhhhccC----CCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCC----CC
Q 011587 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVS----GVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM----PE 251 (482)
Q Consensus 181 li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----p~ 251 (482)
....+.. .|++++|+..|++.. .. +-.+ ...++..+...+...|+++.|...+.+..+.... ++
T Consensus 109 ~g~~~~~-----~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 109 RGMYELD-----QREYLSAIKFFKKAE--SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHH-----TTCHHHHHHHHHHHH--TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHH-----hcCHHHHHHHHHHHH--HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 4445666 899999999999986 32 1122 3467888999999999999999999998875321 01
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-C
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KN----VLTWTAMATGMAIHGKGNEAIRLLDSMRDC----GV-K 317 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~ 317 (482)
....+++.+...|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2345788899999999999999999998763 11 247888999999999999999999998762 23 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCcCHHHHHHHHHHHhccCC---HHHHHHHHHcCCCCCC-HHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW---GVEPHIKHYSCIVDLLGRAGH---LEEAYNFIMGIPIKPD-AIL 390 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~ 390 (482)
....++..+...+.+.|++++|...+++..+.. +.+.....+..+...|...|+ .++|+.++++.+..|+ ...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345678889999999999999999999987631 122223346778888899999 8999999999865553 446
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+..+...|...|++++|...++++.+...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999988655
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-09 Score=108.63 Aligned_cols=401 Identities=6% Similarity=-0.028 Sum_probs=269.1
Q ss_pred ChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCC---hHHHHHHhhcCC--C---CChh
Q 011587 6 GHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS---TKIVHFVFTHFD--P---PNLF 75 (482)
Q Consensus 6 ~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~---~~~a~~~~~~~~--~---~~~~ 75 (482)
|..+|...+..+- +....+..+++.+... ++.....+...+..-.+. ++ ++.+.++|+... . |++.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~---~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDK---MEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC-----CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 5667777777654 6788899999998876 677777788888887777 77 999999999876 3 7777
Q ss_pred hHHHHhcC----CCC--------ccHHHHHHHHHH-CCC-CCCChhhHHHHHHHhhhccC------cchhhhHHHHHHHH
Q 011587 76 LFNTLIRC----TPP--------QDSVLVFAYWVS-KGL-LTFDDFTYVFALGSCARFCS------LSTLWLGRQIHVHV 135 (482)
Q Consensus 76 ~~~~ll~~----~~~--------~~a~~~~~~m~~-~~~-~p~~~~~~~~ll~~~~~~~~------~~~~~~a~~~~~~~ 135 (482)
.|...+.. ++. +...++|+.... .|. .|.+...|...+........ .++++.+..+|+.+
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 77776654 333 234478887664 465 56355677777765442110 12277888999988
Q ss_pred HHhCCCCchhHHHHHHHHHHh-------------CCChhHHHHHhcc-------CCC--------------C--C-----
Q 011587 136 TKRGFMFNVLVATTLIHFYAS-------------NKDISSGKKVFDQ-------MPM--------------R--S----- 174 (482)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~-------~~~--------------~--~----- 174 (482)
+......-..+|......--. ..+++.|...+.+ +.. | +
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 853111112333222211111 0122233333322 110 0 0
Q ss_pred -chhHHHHHHHHhcCCcc--cccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHH-HHHHHHHHhCCCC
Q 011587 175 -SATWNAMINGYCSQSKK--AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA-CVHGYMEKTFYMP 250 (482)
Q Consensus 175 -~~~~~~li~~~~~~~~~--~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~p 250 (482)
...|...+.---..+.. +....+++..+|++.. . -++-+...|...+..+...|+.+.|. ++++......
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL--~-~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--- 374 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA--Q-HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--- 374 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH--H-HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH--H-HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---
Confidence 12455555432221100 0012345667788875 2 23346778888888888889999996 9999998754
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-------------CC------------HHHHHHHHHHHHhcCChHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-------------KN------------VLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~ 305 (482)
|.+...|...+...-+.|+++.|.++|+++.+ |+ ..+|...+....+.|+.+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 56777888899999999999999999998864 21 236888888888899999999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-
Q 011587 306 RLLDSMRDC-G-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI- 382 (482)
Q Consensus 306 ~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 382 (482)
.+|.+..+. + ..+......+.+.-. ..++.+.|..+|+...+. ++-+...+...++.....|+.+.|..+|++.
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999876 2 222233333333322 235689999999999995 4456667788888888899999999999987
Q ss_pred CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 PIKP----DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 ~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...| ....|...+..-.+.|+.+.+.++.+++.+..|
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3333 346888889888999999999999999999988
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=118.74 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-------CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC------
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-------FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------ 282 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 282 (482)
+..++..+...+...|++++|..+++++.+. .. +....++..+...|...|++++|...+++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH--PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567888899999999999999999998874 22 45667788899999999999999999988753
Q ss_pred -----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 011587 283 -----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC------GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350 (482)
Q Consensus 283 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 350 (482)
....++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|..+++++.+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 13457888889999999999999999988764 2222 34567788889999999999999999987731
Q ss_pred -----C-CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-C---------CCCC-------HHHHHHHHHHHHhcCCHhHH
Q 011587 351 -----G-VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-P---------IKPD-------AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 351 -----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-------~~~~~~l~~~~~~~g~~~~a 407 (482)
+ .+....++..+...|...|++++|.+.+++. . ..+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1 2223557888889999999999999888776 1 1111 12223333344556667777
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
...++......+ .+..++..+..+|.+.|++++|...+++..+
T Consensus 264 ~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDSP--------TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------CH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCc--------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778887777776 6778899999999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-12 Score=117.93 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=164.3
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCC---C
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM---P 250 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p 250 (482)
.+..+...+.. .|++++|+..+++...- ..+..| ...++..+...+...|++++|...+++..+.... +
T Consensus 45 ~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 119 (338)
T 3ro2_A 45 IYSQLGNAYFY-----LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119 (338)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc
Confidence 34444444555 55555555555443200 111122 2456777788888889999999888887664310 0
Q ss_pred CCchhHHHHHHHHHHcCCC--------------------hHHHHHHHHhccC-----C----CHHHHHHHHHHHHhcCCh
Q 011587 251 ENDVFIGTALVDMYSKCGC--------------------LDNALLIFSRMRE-----K----NVLTWTAMATGMAIHGKG 301 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~ 301 (482)
.....++..+...|...|+ +++|...+++..+ . ...++..+...+...|++
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH
Confidence 1123477888888888998 8888888877653 1 234678888889999999
Q ss_pred HHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCH
Q 011587 302 NEAIRLLDSMRDCG----VK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 302 ~~a~~~~~~m~~~g----~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 372 (482)
++|...+++..+.. .. ....++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 99999999876431 11 11336778888899999999999999988763111111 55778888999999999
Q ss_pred HHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 373 EEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 373 ~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++|...+++. +..+ ...++..+...+...|++++|...++++.+..+
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999998876 1111 244777888899999999999999999998765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-10 Score=105.59 Aligned_cols=214 Identities=10% Similarity=0.052 Sum_probs=174.3
Q ss_pred HHHHHHHHHhhhccCCCCcCHHHHHHHHHHhh-------ccCch-------HHHHHHHHHHHHh-CCCCCCchhHHHHHH
Q 011587 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS-------QLGLL-------EFGACVHGYMEKT-FYMPENDVFIGTALV 261 (482)
Q Consensus 197 ~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~p~~~~~~~~~li 261 (482)
++|..+|++.. . ..+-+...|..++..+. +.|++ ++|..++++.++. . +.+...|..++
T Consensus 33 ~~a~~~~~~al--~-~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCL--L-VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHH--H-HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHH
T ss_pred HHHHHHHHHHH--H-HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 67888998886 2 12346667777777765 35776 8999999999984 4 66788999999
Q ss_pred HHHHcCCChHHHHHHHHhccC--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCcH
Q 011587 262 DMYSKCGCLDNALLIFSRMRE--K-NVL-TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-CHAGLV 336 (482)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~ 336 (482)
..+.+.|++++|..+|++..+ | +.. +|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999875 4 343 899999999999999999999999988643 3444454333332 236999
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-C---CCC--CHHHHHHHHHHHHhcCCHhHHHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-P---IKP--DAILWRSLLSACNVHGDVALGEKV 410 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 410 (482)
++|..+|++..+. .+-+...|..++..+.+.|++++|..+|++. . +.| ....|..++..+.+.|+.+.|..+
T Consensus 186 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 186 SVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999984 3456788999999999999999999999988 2 355 467899999999999999999999
Q ss_pred HHHHHhcCC
Q 011587 411 GKILLQLQP 419 (482)
Q Consensus 411 ~~~~~~~~~ 419 (482)
++++.+..|
T Consensus 264 ~~~a~~~~p 272 (308)
T 2ond_A 264 EKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcc
Confidence 999999988
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-10 Score=105.05 Aligned_cols=215 Identities=10% Similarity=-0.015 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH-------cCCCh-------HHHHHHHHhccC---C-CHHHHHHHHHHH
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYS-------KCGCL-------DNALLIFSRMRE---K-NVLTWTAMATGM 295 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~ 295 (482)
+.|..+|++++... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67888999999877 778889988888876 35886 899999998865 3 556899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh-ccCCH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPN-AV-TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG-RAGHL 372 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 372 (482)
.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+.+...|........ ..|+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999985 444 33 7888999999999999999999999983 3445555654443322 36999
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccC--CchhHHHHHHHHHhCCCchH
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC--TSEDFVALSNIYASAERWPD 448 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 448 (482)
++|.++|++. ...| +...|..++..+.+.|++++|..+|+++++..+ +.| ....|..++..+.+.|+.++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~------l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS------LPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS------SCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999987 3234 678899999999999999999999999999631 003 45688889999999999999
Q ss_pred HHHHHHHhHhcCC
Q 011587 449 VESVRKQMKVKRV 461 (482)
Q Consensus 449 a~~~~~~m~~~~~ 461 (482)
|..+++++.+...
T Consensus 260 a~~~~~~a~~~~p 272 (308)
T 2ond_A 260 ILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc
Confidence 9999999876543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-09 Score=106.40 Aligned_cols=425 Identities=10% Similarity=-0.025 Sum_probs=281.6
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CC-ChhhHHHHhcC----CC---CccHHHHH
Q 011587 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PP-NLFLFNTLIRC----TP---PQDSVLVF 93 (482)
Q Consensus 24 ~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~ll~~----~~---~~~a~~~~ 93 (482)
....++...+.+ +.+...+..++..+.+. +.++.+..+|+.+. -| ....|...+.. ++ ++.+.++|
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~---~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSL---KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455555544 57888999999999988 99999999999887 23 33445555544 66 99999999
Q ss_pred HHHHHCCCCCCChhhHHHHHHHhhhccCc------chhhhHHHHHHHHHH-hCC-CC-chhHHHHHHHHHHh--------
Q 011587 94 AYWVSKGLLTFDDFTYVFALGSCARFCSL------STLWLGRQIHVHVTK-RGF-MF-NVLVATTLIHFYAS-------- 156 (482)
Q Consensus 94 ~~m~~~~~~p~~~~~~~~ll~~~~~~~~~------~~~~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~-------- 156 (482)
++.+.....|++...|..-+....+.+ + +..+.+.++|+..+. .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999986522238888888777665544 3 012445578887766 366 55 45688888876543
Q ss_pred -CCChhHHHHHhccCCC-CC---chhH---HHHHHHHhcCCc-----ccccchHHHHHHHHHhhhccCCC----C-----
Q 011587 157 -NKDISSGKKVFDQMPM-RS---SATW---NAMINGYCSQSK-----KAKDCAFNALVLFRDMLVDVSGV----K----- 214 (482)
Q Consensus 157 -~g~~~~A~~~~~~~~~-~~---~~~~---~~li~~~~~~~~-----~~~~~~~~a~~~~~~m~~~~~~~----~----- 214 (482)
.++++.+..+|++... |. ..+| ..+-..+..... -....++.|...+.++..-..++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 3456788899988764 21 1222 222222111000 00123344555554432101111 0
Q ss_pred ------c-----C---HHHHHHHHHHhhccC-------chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 011587 215 ------P-----T---DTTMVCVLSVSSQLG-------LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273 (482)
Q Consensus 215 ------p-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A 273 (482)
| + ...|...+..--..+ ..+.+..+|++++... +....+|...+..+...|+.++|
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~---p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV---CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 1 123444444333222 1233557788888876 66888999999999999999999
Q ss_pred H-HHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHH
Q 011587 274 L-LIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV---------KPN------------AVTFTSLFA 328 (482)
Q Consensus 274 ~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~ 328 (482)
. ++|++... | +...|-..+...-+.|++++|..+|+++.+... .|+ ...|...+.
T Consensus 363 ~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 363 ITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 6 99998874 3 555677788888899999999999999876410 132 235777777
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc-CCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHh
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA-GHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
...+.|+.+.|..+|.++.+. ........|...+..-.+. ++.+.|.++|+.. ..+-+...|...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 777889999999999999883 1122334444333333344 4589999999987 33336667788888888899999
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCc
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 462 (482)
.|..+|++++...++. ......|..++..-.+.|+.+.+.++.+++.+.-..
T Consensus 522 ~AR~lferal~~~~~~-----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDS-----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSST-----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999987720 013567888888889999999999999999876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=119.39 Aligned_cols=211 Identities=10% Similarity=-0.026 Sum_probs=180.6
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch-HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL-EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 271 (482)
.+.+++++..++... ...+.+...+..+...+...|++ ++|...++++++.. +.+...|..+...|.+.|+++
T Consensus 81 ~~~~~~al~~l~~~~---~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 81 QEEMEKTLQQMEEVL---GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 344667888888764 22334788899999999999999 99999999999987 678899999999999999999
Q ss_pred HHHHHHHhccC--CCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-------
Q 011587 272 NALLIFSRMRE--KNVLTWTAMATGMAIH---------GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA------- 333 (482)
Q Consensus 272 ~A~~~~~~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------- 333 (482)
+|...|++..+ |+..++..+...|... |++++|+..|++..+... -+...+..+..+|...
T Consensus 155 ~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 155 SAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccc
Confidence 99999999874 6778889999999999 999999999999988643 3678888999999988
Q ss_pred -CcHHHHHHHHHHhHHhcCCC---cCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 334 -GLVEEGLHLFDNMKSKWGVE---PHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 334 -~~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
|++++|...|++..+. .+ .+...|..+..+|...|++++|.+.|++. .+.| +...+..+...+...|++++|
T Consensus 234 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 234 PKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 23 47889999999999999999999999988 4445 667788888899999999888
Q ss_pred HHHHH
Q 011587 408 EKVGK 412 (482)
Q Consensus 408 ~~~~~ 412 (482)
.+.+.
T Consensus 312 i~~~~ 316 (474)
T 4abn_A 312 LESKG 316 (474)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 87554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-12 Score=117.26 Aligned_cols=227 Identities=8% Similarity=-0.075 Sum_probs=174.2
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCC-C--CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C-----CHHHHH
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYM-P--ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K-----NVLTWT 289 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~-p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 289 (482)
....+...|++++|...++++.+.-.. | +....++..+...|...|++++|...+++..+ + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999875210 0 12456789999999999999999999988763 1 235788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCC-CcCHHHHH
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGV-EPHIKHYS 360 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 360 (482)
.+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988653 1111 1247888899999999999999999998871 123 33467888
Q ss_pred HHHHHHhccCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCCCcccccccCCc
Q 011587 361 CIVDLLGRAGHLEEAYNFIMGI-------PIKPDAILWRSLLSACNVHGD---VALGEKVGKILLQLQPEVTFVDVACTS 430 (482)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
.+...|.+.|++++|.+.+++. +.+.....+..+...+...|+ +++|..++++. +.. ....
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~------~~~~ 339 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY------ADLE 339 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH------HHHH
Confidence 9999999999999999999876 211123345667778888898 77777777765 220 1345
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..+..+...|.+.|++++|...+++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5778899999999999999999998864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.9e-12 Score=113.28 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=168.2
Q ss_pred chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccC-------CCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhC
Q 011587 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS-------GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247 (482)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (482)
..++..+...+.. .|++++|+..|+++. .. ........+..+...+...|++++|...++++.+..
T Consensus 27 ~~~~~~l~~~~~~-----~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 27 LRTLHNLVIQYAS-----QGRYEVAVPLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4567777777877 888888888888776 31 223345678889999999999999999999988752
Q ss_pred -----CCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 248 -----YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----------K-NVLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 248 -----~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
..++....++..+...|...|++++|...|++..+ + ...++..+...+...|++++|..+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11134567788999999999999999999988763 1 3456888899999999999999999998
Q ss_pred HhC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCcC-------HHHHHHHHHHHhccCC
Q 011587 312 RDC------GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW------GVEPH-------IKHYSCIVDLLGRAGH 371 (482)
Q Consensus 312 ~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-------~~~~~~li~~~~~~g~ 371 (482)
.+. +..| ...++..+...|...|++++|...++++.+.. ...+. ...+..+...+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 764 2223 34577888899999999999999999988631 01111 1122223333344455
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 372 LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 372 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+.++...++.. ...| ...++..+...|...|++++|...++++++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 55556666665 2334 566788899999999999999999999988755
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=9e-11 Score=97.57 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=78.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (482)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 33334444444444444444443321 113334444444444444444444444444441 122344444444555555
Q ss_pred CCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCch
Q 011587 370 GHLEEAYNFIMGI-P-IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447 (482)
Q Consensus 370 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (482)
|++++|.+.+++. . .+.+...+..+...+...|++++|...++++.+..+ .+...+..++..+.+.|+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--------NEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHcCCHH
Confidence 5555555555444 1 122444555555556666666666666666666555 45556666666666666666
Q ss_pred HHHHHHHHhHh
Q 011587 448 DVESVRKQMKV 458 (482)
Q Consensus 448 ~a~~~~~~m~~ 458 (482)
+|...+++..+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-11 Score=119.32 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+|+.|...|.+.|++++|+..|++..+.... +...+..+..+|.+.|++++|...|++..+. -+-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345555666666666666666666666554221 3455666666666666666666666666652 1234556666666
Q ss_pred HHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 365 LLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
+|...|++++|++.|++. .+.| +...|+.+..+|...|++++|+..|+++++..| .+...+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--------~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP--------DFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHhhhhhHHHh
Confidence 666666666666666655 3344 456667777777777777777777777777777 566777777777777
Q ss_pred CCCchHHHHHHHHhH
Q 011587 443 AERWPDVESVRKQMK 457 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~ 457 (482)
.|++++|.+.+++..
T Consensus 158 ~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 158 VCDWTDYDERMKKLV 172 (723)
T ss_dssp TTCCTTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 777777776666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-09 Score=100.18 Aligned_cols=261 Identities=13% Similarity=0.022 Sum_probs=182.5
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhCCC-CCC--chhHHHHHHHHHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTD----TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM-PEN--DVFIGTALVDMYS 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~--~~~~~~~li~~~~ 265 (482)
.|++++|...+++.. ...-..+. .++..+...+...|+++.|...+++....... +.+ ...++..+...+.
T Consensus 27 ~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 27 DGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp TTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 788889999888875 32212222 24566677788899999999999988764310 011 1233567888899
Q ss_pred cCCChHHHHHHHHhccC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHHHHHHH
Q 011587 266 KCGCLDNALLIFSRMRE----------K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK--P--NAVTFTSLFAAC 330 (482)
Q Consensus 266 ~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~ll~~~ 330 (482)
..|++++|...+++..+ + ...++..+...+...|++++|...+++....... + ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 99999999999988753 1 1245667788889999999999999988653221 1 235677788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHH-----HHHHHHhccCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYS-----CIVDLLGRAGHLEEAYNFIMGI-PIKPD-----AILWRSLLSACN 399 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~ 399 (482)
...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999876311111111222 2334577899999999999887 22221 335667788899
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCc-hhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTS-EDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..|++++|...++++....+..+. .++. .++..+..++...|++++|...+++...
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRL---MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcc---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998775441100 0122 3667788889999999999998887653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-10 Score=95.39 Aligned_cols=164 Identities=12% Similarity=0.018 Sum_probs=139.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
....+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455677788889999999999999998875 367788889999999999999999999988763 3367788888889
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 407 (482)
+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999883 4557788888999999999999999999887 22 33678888999999999999999
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
...++++.+..|
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999999998877
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-10 Score=109.25 Aligned_cols=227 Identities=10% Similarity=-0.022 Sum_probs=163.3
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhCCC-C--CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C-----CHHHH
Q 011587 222 CVLSVSSQLGLLEFGACVHGYMEKTFYM-P--ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K-----NVLTW 288 (482)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~ 288 (482)
.....+...|++++|...++++.+.... + +....++..+...|...|+++.|...+++..+ + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3445567889999999999998765310 0 12355778888899999999999988887653 1 23567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCcCHHHHH
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEPHIKHYS 360 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 360 (482)
+.+..+|...|++++|...|++..+. +..+ ...++..+..+|...|++++|...+++..+- .+.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88888999999999999999887652 2111 2346777888889999999999999988761 12233367788
Q ss_pred HHHHHHhccCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCCCcccccccCCc
Q 011587 361 CIVDLLGRAGHLEEAYNFIMGI-------PIKPDAILWRSLLSACNVHGD---VALGEKVGKILLQLQPEVTFVDVACTS 430 (482)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
.+...|.+.|++++|.+.+++. +.+.....+..+...+...++ +.+|...+++ .+.. ....
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~------~~~~ 336 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLH------AYIE 336 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCH------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCCh------hHHH
Confidence 8889999999999999888876 111223455666666777777 6677776665 2210 1234
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
..+..+...|.+.|++++|...+++..
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566788999999999999999888775
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-09 Score=99.45 Aligned_cols=303 Identities=9% Similarity=0.017 Sum_probs=209.4
Q ss_pred ChhhHHHHHHHh--hhccCcchhhhHHHHHHHHHHh--CCCC--chhHHHHHHHHH--HhCCChhHHH---------HHh
Q 011587 105 DDFTYVFALGSC--ARFCSLSTLWLGRQIHVHVTKR--GFMF--NVLVATTLIHFY--ASNKDISSGK---------KVF 167 (482)
Q Consensus 105 ~~~~~~~ll~~~--~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~--~~~g~~~~A~---------~~~ 167 (482)
+...-+.+-.-| .+.+ + +++|.++++++.+. .+.. +...|-.++..- .-.+.+..+. +.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~-~--~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQF-S--VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp HHHHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-C--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 444444454455 4445 6 99999999887663 2222 333344444321 1112222222 444
Q ss_pred ccCCC---C--Cch---hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCC-CCc----CHHHHHHHHHHhhccCchH
Q 011587 168 DQMPM---R--SSA---TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG-VKP----TDTTMVCVLSVSSQLGLLE 234 (482)
Q Consensus 168 ~~~~~---~--~~~---~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~ 234 (482)
+.+.. + +.. .|-.....+.. .|++++|+..|++.. ... -.+ ...++..+...+...|+++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~-----~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFD-----QKEYVEAIGYYREAE--KELPFVSDDIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--TTGGGCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHH--HHHhhCCChHHHHHHHHHHHHHHHHcCCcH
Confidence 44321 1 111 12223344566 899999999999886 221 112 2457888899999999999
Q ss_pred HHHHHHHHHHHhCCC-C---CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C----CHHHHHHHHHHHHhcCCh
Q 011587 235 FGACVHGYMEKTFYM-P---ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K----NVLTWTAMATGMAIHGKG 301 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~-p---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~ 301 (482)
.|...+.+..+.... + .....+++.+...|...|++++|...|++..+ + ...++..+..+|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 999999998764310 0 11355778899999999999999999988764 1 235788889999999999
Q ss_pred HHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC---CCcCHHHHHHHHHHHhccCC--
Q 011587 302 NEAIRLLDSMRD-----CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG---VEPHIKHYSCIVDLLGRAGH-- 371 (482)
Q Consensus 302 ~~a~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~-- 371 (482)
++|...+++..+ ... ....++..+...+.+.|++++|...+++..+... .+.....+..+...|...++
T Consensus 239 ~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999876 432 2367788899999999999999999999887421 22224456677777888888
Q ss_pred -HHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 372 -LEEAYNFIMGIPIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 372 -~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
..+|+..+++.+..|+ ...+..+...|...|++++|...|+++.+..
T Consensus 318 ~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 318 KIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999998754443 3456778888999999999999999988754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.8e-10 Score=96.00 Aligned_cols=205 Identities=9% Similarity=-0.056 Sum_probs=156.7
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAM 291 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 291 (482)
.|+..+......+...|++++|...|+++.+... +++...+..+..++...|++++|+..|++..+ | +..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 4668888899999999999999999999999873 26777888899999999999999999998874 3 56788899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc--CHHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNA-------VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP--HIKHYSCI 362 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 362 (482)
..+|...|++++|...+++..+.... +. ..|..+...+...|++++|...|++..+. -+. +...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999886422 34 45777778888999999999999999873 233 35677778
Q ss_pred HHHHhccCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-P-IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
...|...|+. .++++ . ...+...|.... ....+.+++|...++++.+..| .+..+...+...
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p--------~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP--------NRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC--------CCHHHHHHHHHH
Confidence 8887665543 22222 1 122444554443 3345778999999999999999 566666555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-09 Score=97.63 Aligned_cols=291 Identities=10% Similarity=-0.026 Sum_probs=171.1
Q ss_pred HHHHhCCChhHHHHHhccCC----CCCc----hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCCCc-CHHHH
Q 011587 152 HFYASNKDISSGKKVFDQMP----MRSS----ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGVKP-TDTTM 220 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~~~ 220 (482)
..+...|++++|...+++.. ..+. .+++.+...+.. .|++++|...+++...- ..+... ...++
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-----KGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33444555555555544321 1111 134444555556 66666676666665410 111110 12335
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhC----CC-CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C------CHHH
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTF----YM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K------NVLT 287 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~ 287 (482)
..+...+...|++++|...+++..+.. .. ++.....+..+...+...|++++|...+++..+ + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566677778888888888887776532 10 011234556677788888888888888877652 1 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHhccCcHHHHHHHHHHhHHhcCCCc---CHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN--AVTFT----SLFAACCHAGLVEEGLHLFDNMKSKWGVEP---HIKH 358 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 358 (482)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.... ...+ ....
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 77777888888999999998888764311111 11111 2234466889999999998888762 2111 1235
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-------CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccc-ccCC
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-------PIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD-VACT 429 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 429 (482)
+..+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++.+.....+... +...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~ 335 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 335 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHc
Confidence 667778888889999998888765 211222 2556667778889999999999998887544211000 0011
Q ss_pred chhHHHHHHHHHhCCCchH
Q 011587 430 SEDFVALSNIYASAERWPD 448 (482)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~ 448 (482)
......++..+...+..++
T Consensus 336 g~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 336 GEAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHHHHHHHHHHHTTCSCH
T ss_pred cHHHHHHHHHHHhCCCCch
Confidence 2233455556666666533
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-10 Score=95.31 Aligned_cols=191 Identities=13% Similarity=-0.035 Sum_probs=131.3
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
.++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567777888888888888888888887763 56666666888888888888888888888776432 556777788
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCcCH-------HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH---HHHHHHH
Q 011587 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHI-------KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI---LWRSLLS 396 (482)
Q Consensus 328 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~ 396 (482)
.++...|++++|...+++..+. .+.+. ..|..+...+...|++++|.+.|++. ...|+.. .+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 8888888888888888888873 23334 45667777777888888888888776 4444432 3334444
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+.. .+...++++..... .+...|.... ....+.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~--------~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLAS--------SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTT--------TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhccc--------CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 4433 34455666666665 4444444333 334566799999999887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.5e-10 Score=111.05 Aligned_cols=161 Identities=10% Similarity=0.071 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
+...|+.+...+.+.|++++|.+.|+++++.. +.+...+..+..+|.+.|++++|++.|++..+ .+..+|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45688899999999999999999999999887 67888899999999999999999999998864 3577889999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
.+|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+. -+-+...+..+...|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999998876432 5778888899999999999999999998883 244577888899999999998
Q ss_pred HHHHHHHHcC
Q 011587 373 EEAYNFIMGI 382 (482)
Q Consensus 373 ~~A~~~~~~~ 382 (482)
++|.+.+++.
T Consensus 162 ~~A~~~~~ka 171 (723)
T 4gyw_A 162 TDYDERMKKL 171 (723)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-09 Score=96.04 Aligned_cols=218 Identities=14% Similarity=0.022 Sum_probs=152.2
Q ss_pred HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhC-----CCCCCchhHHHHHHHHHHcCCChHH
Q 011587 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF-----YMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
+|+++++... ....+....++..+...+...|++++|...++++.+.. ..++....++..+...|...|++++
T Consensus 26 ~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 26 QALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 3444554443 22223356788899999999999999999999988762 1113456788999999999999999
Q ss_pred HHHHHHhccC-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccC
Q 011587 273 ALLIFSRMRE-------K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC------GVKP-NAVTFTSLFAACCHAG 334 (482)
Q Consensus 273 A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~ 334 (482)
|...|++..+ + ...++..+...|...|++++|...+++..+. +..| ...++..+...|...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999998763 1 3467888999999999999999999998764 1123 3567888899999999
Q ss_pred cHHHHHHHHHHhHHhc------CCCc-CHHHHHHHHHHHhcc------CCHHHHHHHHHcCC-CCC-CHHHHHHHHHHHH
Q 011587 335 LVEEGLHLFDNMKSKW------GVEP-HIKHYSCIVDLLGRA------GHLEEAYNFIMGIP-IKP-DAILWRSLLSACN 399 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 399 (482)
++++|...+++..+.. ...+ ....+..+...+... ..+..+...++..+ ..| ...++..+...|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999988731 1111 222333333333332 23445555555553 223 4567888999999
Q ss_pred hcCCHhHHHHHHHHHHhc
Q 011587 400 VHGDVALGEKVGKILLQL 417 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~ 417 (482)
..|++++|...++++++.
T Consensus 264 ~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=97.72 Aligned_cols=223 Identities=12% Similarity=0.036 Sum_probs=154.0
Q ss_pred hccCchHHHHHHHHHHHHh-----CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----------CCHHHHHHH
Q 011587 228 SQLGLLEFGACVHGYMEKT-----FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----------KNVLTWTAM 291 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 291 (482)
...|+++.|...+++.++. +..++....++..+...|...|++++|...|++..+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888887663 111134567788899999999999999999988762 134578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----C-CCcCHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDC------GV-KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW-----G-VEPHIKH 358 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~ 358 (482)
...|...|++++|...+++..+. .. +....++..+...+...|++++|...++++.+.. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988654 11 2235677888889999999999999999988730 1 2234567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-C---------CCC-CHHHHHHHHHHHHhcCCHhHH------HHHHHHHHhcCCCc
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-P---------IKP-DAILWRSLLSACNVHGDVALG------EKVGKILLQLQPEV 421 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p-~~~~~~~l~~~~~~~g~~~~a------~~~~~~~~~~~~~~ 421 (482)
+..+...|...|++++|.+.+++. . ..+ ....|..+...+...+....+ ...++......+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP-- 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH--
Confidence 888889999999999999888766 1 122 222333333333333332222 222221111112
Q ss_pred ccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
....++..+..+|.+.|++++|..++++..+
T Consensus 250 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 ------TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999998764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.3e-09 Score=81.06 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=58.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGD 403 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 403 (482)
+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++ .. +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444431 1223334444444444444444444444443 11 1233444445555555555
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
+++|.+.++++.+..+ .+...+..++..+.+.|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDP--------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555555 4445555555555555555555555555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-09 Score=94.13 Aligned_cols=207 Identities=10% Similarity=-0.069 Sum_probs=152.8
Q ss_pred chHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCChH
Q 011587 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTALVDMYSKCGCLD 271 (482)
Q Consensus 195 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~~~ 271 (482)
++++|...|++. ...+...|++++|...+.+..+... .|.....+|+.+..+|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477787777765 3457788999999999998876521 01112568899999999999999
Q ss_pred HHHHHHHhccCC-----C----HHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHhccCcH
Q 011587 272 NALLIFSRMREK-----N----VLTWTAMATGMAIH-GKGNEAIRLLDSMRDCGVKP-N----AVTFTSLFAACCHAGLV 336 (482)
Q Consensus 272 ~A~~~~~~~~~~-----~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~~~~ 336 (482)
+|+..|++..+- + ..+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999988641 1 35788899999996 99999999999887632110 1 35688889999999999
Q ss_pred HHHHHHHHHhHHhcCCCc-CH-----HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH------HHHHHHHHHH--hc
Q 011587 337 EEGLHLFDNMKSKWGVEP-HI-----KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI------LWRSLLSACN--VH 401 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~ 401 (482)
++|...|++..+. .... .. ..|..+..++...|++++|...|++. .+.|+.. .+..++.++. ..
T Consensus 175 ~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 175 IEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999999984 2221 11 25777888899999999999999988 5555422 3444555554 45
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 011587 402 GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~ 419 (482)
+++++|...|+.+.+.+|
T Consensus 254 ~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccCCccHH
Confidence 678888888877766655
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-08 Score=84.96 Aligned_cols=242 Identities=11% Similarity=0.020 Sum_probs=166.4
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|++..++.-...+. ...+ ......+.+++...|++... ..+.+....+..+.. |...+
T Consensus 26 ~G~yq~~i~e~~~~~----~~~~-~~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFS----KVTD-NTLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp TTCHHHHTHHHHTSS----CCCC-HHHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred hhHHHHHHHHHHhcC----ccch-HHHHHHHHHHHHHcCCCccC-----------CCCCHHHHHHHHHHH-Hhccc----
Confidence 788888887444442 1222 23344455777777776642 112334434444444 33433
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 273 ALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 273 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..|.. -+...+...+..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777887763 45566678888999999999999999998776642 2566788889999999999999999999987
Q ss_pred hcCCCc-----CHHHHHHHHHHHh--ccC--CHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 349 KWGVEP-----HIKHYSCIVDLLG--RAG--HLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 349 ~~~~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
. .| +..+...++.++. ..| +..+|..+|+++ ...|+..+-..++.++.+.|++++|++.++.+.+..
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 55 3566667776643 234 899999999999 445664444455558899999999999999887763
Q ss_pred CCcccc--cccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 419 PEVTFV--DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 419 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
|+.+.. .-..++.+...++......|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 210000 000577888677777777786 8899999988654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-09 Score=95.90 Aligned_cols=206 Identities=12% Similarity=-0.009 Sum_probs=148.5
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-------C--CHHHHHHHHHHHHhcCChH
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-------K--NVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~ 302 (482)
++++|...+.++ ...|...|++++|...|++..+ + ...+|+.+..+|...|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477777776654 4467788999999999987763 1 1468899999999999999
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCH
Q 011587 303 EAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHA-GLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 303 ~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 372 (482)
+|+..+++..+. |-.+ -..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999988653 2111 145788888999996 9999999999998873110111 35788899999999999
Q ss_pred HHHHHHHHcC-CCCCC---H-----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH--
Q 011587 373 EEAYNFIMGI-PIKPD---A-----ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA-- 441 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 441 (482)
++|+..|++. .+.|+ . ..|..+..++...|++++|...+++.++..|+... ......+..++.++.
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHcC
Confidence 9999999987 22332 1 25677788899999999999999999998873110 001123445666665
Q ss_pred hCCCchHHHHHHHHhH
Q 011587 442 SAERWPDVESVRKQMK 457 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~ 457 (482)
..+++++|...++++.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 4567888888886654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-09 Score=91.85 Aligned_cols=164 Identities=12% Similarity=-0.010 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N---VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPN-AVTFTS 325 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 325 (482)
...+..+...+.+.|++++|...|+++.+ | + ..++..+..+|.+.|++++|...|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444444444555555555555554442 1 1 33444444555555555555555555544311 111 223334
Q ss_pred HHHHHhc--------cCcHHHHHHHHHHhHHhcCCCcCHHH-----------------HHHHHHHHhccCCHHHHHHHHH
Q 011587 326 LFAACCH--------AGLVEEGLHLFDNMKSKWGVEPHIKH-----------------YSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 326 ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~~li~~~~~~g~~~~A~~~~~ 380 (482)
+..++.. .|++++|...|+++.+.. +.+... +..+...|.+.|++++|...|+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444 555555555555555421 111111 2566788899999999999998
Q ss_pred cC-CCCCC----HHHHHHHHHHHHhc----------CCHhHHHHHHHHHHhcCC
Q 011587 381 GI-PIKPD----AILWRSLLSACNVH----------GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 381 ~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 419 (482)
+. ...|+ ...+..+..+|... |++++|...++++++..|
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 87 32343 45677777778766 899999999999999988
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-08 Score=79.09 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 466677777888888888888888776542 35667777777888888888888888888773 244566777888888
Q ss_pred hccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 367 GRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888876 22 33567778888888888999999999988888766
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=108.61 Aligned_cols=169 Identities=12% Similarity=-0.017 Sum_probs=91.4
Q ss_pred hccCchHHHHHHHHHHH--------HhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHH
Q 011587 228 SQLGLLEFGACVHGYME--------KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMA 296 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 296 (482)
...|++++|.+.++++. +.. +.+...+..+...|...|++++|++.|++..+ .+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 45566666666666655 322 34455555566666666666666666665553 24455555666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (482)
..|++++|+..|++..+.... +...+..+..++.+.|++++ ...|++..+. -+.+...|..+..+|.+.|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665554321 34455555556666666666 6666665552 2234455556666666666666666
Q ss_pred HHHHcC-CCCCC-HHHHHHHHHHHHhcCC
Q 011587 377 NFIMGI-PIKPD-AILWRSLLSACNVHGD 403 (482)
Q Consensus 377 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 403 (482)
+.|++. .+.|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666655 44453 3344444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-07 Score=82.71 Aligned_cols=174 Identities=11% Similarity=0.062 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 236 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
+...+++..+.+ +++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555554443 22334445666667777777777777766633 2445666667777777777777777777
Q ss_pred HHhCCCCC-----CHHHHHHHHHHHh--ccC--cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 311 MRDCGVKP-----NAVTFTSLFAACC--HAG--LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 311 m~~~g~~p-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
|.+. .| +..+...+..++. ..| +..+|..+|+++.++ .|+..+-..++.++.+.|++++|.+.++.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7664 44 2444455555522 223 677777777777653 33323333344467777777777777764
Q ss_pred C-CC----------CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 382 I-PI----------KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 382 ~-~~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+ .. .| +..+...+|......|+ +|.++++++.+..|
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 4 11 13 45555455555555565 67777777777777
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-07 Score=81.87 Aligned_cols=186 Identities=12% Similarity=-0.007 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH-HHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN----VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PNA-VTFT 324 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~ 324 (482)
+...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677788888999999999988874 32 246777888888889999999999888775322 111 1344
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC
Q 011587 325 SLFAACCH------------------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386 (482)
Q Consensus 325 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 386 (482)
.+..++.. .|+.++|...|+++.+. .+-+...+....... ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----HHHHHH----------
Confidence 44444443 45666777777766663 222222222111100 000000
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc---hhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS---EDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
......+...+.+.|++++|...|+++++..| .+. ..+..+..++.+.|++++|.+.++.+...+...
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP--------DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc--------CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112356678899999999999999999988 333 578899999999999999999999888765543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=85.52 Aligned_cols=142 Identities=8% Similarity=-0.062 Sum_probs=98.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
..+...|++++|+..++...... +-+...+..+...|.+.|++++|...|++..+. -+-+...|..+...|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 33445566777777777665431 113344556677777778888888888877773 244567777788888888888
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHH-HHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEK-VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
++|...|++. .+.| +...|..+...|.+.|++++|.+ .++++++..| .++.+|......+.+.|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P--------~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP--------GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST--------TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHHhCc
Confidence 8888888776 4445 56777788888888888776554 4588888888 677888877777777664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-08 Score=81.77 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=47.2
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH----------------HHHHHHcCCChHHHHHHHHhccC--
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA----------------LVDMYSKCGCLDNALLIFSRMRE-- 282 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~-- 282 (482)
......+...|++++|...|+++.+.. |.+...+.. +..+|.+.|++++|+..|++..+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 334445566777777777777777665 334444444 44444444555555544444432
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 283 -KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 283 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
.+...|..+..+|...|++++|+..|++..+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 13344444444444444555555444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-08 Score=85.66 Aligned_cols=172 Identities=10% Similarity=0.024 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN---AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKH 358 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 358 (482)
.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|+++.+...-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 46677778888899999999999999999886422 3 567788889999999999999999999985221222 456
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHcC-CCCCC-HHHH-----------------HHHHHHHHhcCCHhHHHHHH
Q 011587 359 YSCIVDLLGR--------AGHLEEAYNFIMGI-PIKPD-AILW-----------------RSLLSACNVHGDVALGEKVG 411 (482)
Q Consensus 359 ~~~li~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~a~~~~ 411 (482)
+..+..++.. .|++++|...|++. ...|+ .... ..+...|...|++++|...|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888888 99999999999987 32342 2222 45677889999999999999
Q ss_pred HHHHhcCCCcccccccCCchhHHHHHHHHHhC----------CCchHHHHHHHHhHhcC
Q 011587 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASA----------ERWPDVESVRKQMKVKR 460 (482)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 460 (482)
+++++..|+. ......+..+..+|.+. |++++|...++++.+..
T Consensus 172 ~~~l~~~p~~-----~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDT-----PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTS-----TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCC-----chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999998820 01345778888888876 89999999999988654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=9e-08 Score=96.66 Aligned_cols=184 Identities=10% Similarity=-0.020 Sum_probs=133.8
Q ss_pred cccchHHHHHHHHHhhh----cc-CCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc
Q 011587 192 AKDCAFNALVLFRDMLV----DV-SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266 (482)
Q Consensus 192 ~~~~~~~a~~~~~~m~~----~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~ 266 (482)
..|++++|++.+++... .. ...+.+...+..+..++...|++++|...++++.+.. +.+...+..+..+|..
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHHHH
Confidence 36788888888888740 00 2223456677888888888888888888888888877 6678888888888888
Q ss_pred CCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 267 CGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 267 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
.|++++|++.|++..+ | +...|..+..+|.+.|++++ +..|++..+.... +...+..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888764 3 56778888888888888888 8888888776432 5677888888888888888888888
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhccCC--------HHHHHHHHHcC
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGH--------LEEAYNFIMGI 382 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~~ 382 (482)
+++.+. -+-+...+..+..++...++ +++|.+.+..+
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888762 22235666677777765444 44555555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-07 Score=78.75 Aligned_cols=172 Identities=9% Similarity=-0.074 Sum_probs=108.4
Q ss_pred HHHHHHhccC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 011587 273 ALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG----LVEEGLHLFDNMK 347 (482)
Q Consensus 273 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 347 (482)
|.++|++..+ .+..++..+...|...+++++|...|++..+.| +...+..+...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444432 355566666666666677777777777766654 44555556666665 5 6777777777776
Q ss_pred HhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcC-CCCCC---HHHHHHHHHHHHh----cCCHhHHHHHHHHHH
Q 011587 348 SKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGI-PIKPD---AILWRSLLSACNV----HGDVALGEKVGKILL 415 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 415 (482)
+. | +...+..|...|.. .+++++|.++|++. ...|. ...+..|...|.. .+++++|..+|++..
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 62 3 45566666666665 66777777777766 33332 5666667666766 667777777777777
Q ss_pred hcCCCcccccccCCchhHHHHHHHHHhC-C-----CchHHHHHHHHhHhcCC
Q 011587 416 QLQPEVTFVDVACTSEDFVALSNIYASA-E-----RWPDVESVRKQMKVKRV 461 (482)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 461 (482)
+. + .+...+..|...|... | ++++|...+++..+.|.
T Consensus 157 ~~-~--------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-S--------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-S--------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-C--------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 76 2 2445666666666543 2 67777777777766654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-08 Score=86.95 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=126.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 011587 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350 (482)
Q Consensus 271 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 350 (482)
+.....+......+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3444555555544556667777778888888888888888877642 25667777888888888888888888888763
Q ss_pred CCCcCHHHHHHH-HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 351 GVEPHIKHYSCI-VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 351 ~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
.|+....... ...+...++.++|.+.+++. ...| +...+..+...+...|++++|...++++++..|+ .
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~------~ 252 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT------A 252 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------G
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------c
Confidence 3444332222 23355667777777777766 3344 6777888888888889999999999999888872 0
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 428 CTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.+...+..++..+...|+.++|...+++..
T Consensus 253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 226788888888888898888888776643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-07 Score=81.26 Aligned_cols=213 Identities=15% Similarity=0.134 Sum_probs=135.6
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC--ChHHHHHHHHhccC---CCHHHHHHHHHHH----Hhc---C
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG--CLDNALLIFSRMRE---KNVLTWTAMATGM----AIH---G 299 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---~ 299 (482)
..++|....+.++... |....+|+.-...+...| ++++++++++.+.. .+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 3456777777777776 666667777777777777 77777777777764 2444555443333 334 6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC------
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE--EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH------ 371 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 371 (482)
++++++.+++++.+...+ +...++.-...+.+.|.++ ++.+.++++.+. -+-|-..|+.-...+.+.++
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 677777777777765433 5566655555555666666 777777777763 23355566655555555555
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhcC---CCcccccccCCchhHHHHHHHHHhCCC
Q 011587 372 LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVAL-GEKVGKILLQLQ---PEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 372 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
++++++.++++ ...| |...|+-+...+.+.|+... +..++.++.+.+ + .++..+..++.+|.+.|+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV--------TSSFALETLAKIYTQQKK 273 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE--------SCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC--------CCHHHHHHHHHHHHccCC
Confidence 66777776665 3333 67777776666666665333 445666555544 3 566777777777777777
Q ss_pred chHHHHHHHHhHh
Q 011587 446 WPDVESVRKQMKV 458 (482)
Q Consensus 446 ~~~a~~~~~~m~~ 458 (482)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-08 Score=82.14 Aligned_cols=160 Identities=7% Similarity=-0.040 Sum_probs=124.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTA----------------MATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.+......+...|++++|+..|++..+ | +...|.. +..+|.+.|++++|+..|++..+...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 344556678899999999999999875 3 3456666 88999999999999999999988753
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC--HHHHHHHHHcCCCCCCH--HHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH--LEEAYNFIMGIPIKPDA--ILWR 392 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~ 392 (482)
-+...+..+..++...|++++|...|++..+. -+-+...+..+...|...|+ .+.+...++... .|+. ..+.
T Consensus 86 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 -NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 36788899999999999999999999999984 34567788888888876654 445566666652 3443 3344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
....++...|++++|...|+++++..|
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 455567778999999999999999887
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.6e-08 Score=80.55 Aligned_cols=157 Identities=11% Similarity=-0.015 Sum_probs=112.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hh
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA-CC 331 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 331 (482)
.+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...|++..... |+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 345667778888888888888888774 356778888888888888888888888876653 243333222111 11
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC---HHHHHHHHHHHHhcCCHhHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD---AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a 407 (482)
..+....|...+++..+. .+-+...+..+...+...|++++|...|++. ...|+ ...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222233467788887773 2345778888888899999999999988877 55554 55788888888889999999
Q ss_pred HHHHHHHHh
Q 011587 408 EKVGKILLQ 416 (482)
Q Consensus 408 ~~~~~~~~~ 416 (482)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-08 Score=97.73 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=125.0
Q ss_pred CCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 267 CGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 267 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
.|++++|.+.|++..+ .+...|..+...|...|++++|...+++..+... -+...+..+..+|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999875 3578899999999999999999999999988743 36788889999999999999999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhc---CCHhHHHHHHHHHHhcC
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVH---GDVALGEKVGKILLQLQ 418 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 418 (482)
++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999984 3456789999999999999999999999987 3344 678888899999999 99999999999999999
Q ss_pred CCcccccccCCchhHHHHH
Q 011587 419 PEVTFVDVACTSEDFVALS 437 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~ 437 (482)
+ .+...|..+.
T Consensus 159 p--------~~~~~~~~l~ 169 (568)
T 2vsy_A 159 V--------GAVEPFAFLS 169 (568)
T ss_dssp C--------CCSCHHHHTT
T ss_pred C--------cccChHHHhC
Confidence 9 6666766555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-08 Score=96.22 Aligned_cols=147 Identities=12% Similarity=-0.061 Sum_probs=114.2
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHH
Q 011587 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+..+|..+..+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999998876 66788999999999999999999999999875 367889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc---CCHHHHHHHHHcC
Q 011587 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA---GHLEEAYNFIMGI 382 (482)
Q Consensus 307 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 382 (482)
.+++..+... .+...+..+..++.+.|++++|.+.+++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999988643 36788899999999999999999999999984 344678889999999999 9999999999987
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-07 Score=84.26 Aligned_cols=163 Identities=10% Similarity=-0.041 Sum_probs=116.0
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHH-H
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTA-M 291 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l 291 (482)
.+...+..+...+...|++++|...++++.+.. |.+...+..+...+.+.|++++|...++++.. |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 345567777778888888888888888888877 66777888888888888888888888888864 44332222 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
...+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 223566677777888888777664 2356677777788888888888888888887741111225667777777777777
Q ss_pred HHHHHHHHHc
Q 011587 372 LEEAYNFIMG 381 (482)
Q Consensus 372 ~~~A~~~~~~ 381 (482)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7777666653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.8e-08 Score=86.75 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=151.7
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|++++|.+++++.. .. .+.. .+...++++.|...|.+ ....|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~--k~-~~~~---------~~~~~~~~~~A~~~~~~-----------------a~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAE--KY-LKTS---------FMKWKPDYDSAASEYAK-----------------AAVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHH--HH-HCCC---------SSSCSCCHHHHHHHHHH-----------------HHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHH--HH-cccc---------ccCCCCCHHHHHHHHHH-----------------HHHHHHHcCCHHH
Confidence 577788888888775 11 1111 01114666666666554 3456778899999
Q ss_pred HHHHHHhccCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHH
Q 011587 273 ALLIFSRMREK---------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEE 338 (482)
Q Consensus 273 A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~ 338 (482)
|...|.+..+- -..+|+.+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 99988877631 1457888899999999999999999987542 2111 14577788888888 99999
Q ss_pred HHHHHHHhHHhc---CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CC---CCC----HHHHHHHHHHHHhcCCHhH
Q 011587 339 GLHLFDNMKSKW---GVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI---KPD----AILWRSLLSACNVHGDVAL 406 (482)
Q Consensus 339 a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~ 406 (482)
|...|++..+.. +... ...++..+...|.+.|++++|++.|++. .+ .++ ...+..+..++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 999999987631 1111 1467888899999999999999999877 11 111 2356666777788899999
Q ss_pred HHHHHHHHHhcCCCcccccccCCc---hhHHHHHHHHHhCCCchHHHH
Q 011587 407 GEKVGKILLQLQPEVTFVDVACTS---EDFVALSNIYASAERWPDVES 451 (482)
Q Consensus 407 a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~ 451 (482)
|...|++.+ ..|+. ++. .....++.++ ..|+.+.+..
T Consensus 214 A~~~~~~al-~~p~~------~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGF------SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTS------TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCC------CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999 76631 122 2334555555 5677666655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-05 Score=77.38 Aligned_cols=343 Identities=10% Similarity=-0.031 Sum_probs=211.7
Q ss_pred CChHHHHHHhhcCC--CCChhhHHHHhcC----C-CCccHHHHHHHHHHC-CCCCCChhhHHHHHHHhhhcc-Ccchhhh
Q 011587 57 QSTKIVHFVFTHFD--PPNLFLFNTLIRC----T-PPQDSVLVFAYWVSK-GLLTFDDFTYVFALGSCARFC-SLSTLWL 127 (482)
Q Consensus 57 ~~~~~a~~~~~~~~--~~~~~~~~~ll~~----~-~~~~a~~~~~~m~~~-~~~p~~~~~~~~ll~~~~~~~-~~~~~~~ 127 (482)
++++.+.++|+... .|++..|...+.. + ..+....+|+..... |..|.+...|...+..+.... .+++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 57999999999876 5788888877776 3 456788889888764 544547777777777654321 0233888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------CCChhHHHHHhccCC----CCCchhHHHHHHHHhcCC-
Q 011587 128 GRQIHVHVTKRGFMFNVLVATTLIHFYAS-------------NKDISSGKKVFDQMP----MRSSATWNAMINGYCSQS- 189 (482)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~- 189 (482)
+..+|+..++.....-...|......-.. .+.+..|..+++... ..+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 99999999874211112223322221111 011222333332221 113345655554322210
Q ss_pred -cccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC
Q 011587 190 -KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268 (482)
Q Consensus 190 -~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g 268 (482)
..+.+..+++..+|+++. . ..+-+...|...+..+.+.|+.+.|..++++.... |. +...+.. |+...
T Consensus 188 ~~~~~~~~~Rv~~~ye~al--~-~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~-~~~l~~~----y~~~~ 256 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYIL--D-SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SD-GMFLSLY----YGLVM 256 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHH--H-HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CC-SSHHHHH----HHHHT
T ss_pred cCcchhhHHHHHHHHHHHH--H-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC-cHHHHHH----HHhhc
Confidence 000112456778899886 3 33445778888888888999999999999999988 33 3333332 22211
Q ss_pred ChHHH-HHHHHhcc------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cC
Q 011587 269 CLDNA-LLIFSRMR------------EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH-AG 334 (482)
Q Consensus 269 ~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~ 334 (482)
+.++. ..+.+... ......|...+....+.++.+.|..+|++. .. ...+...|......-.. .+
T Consensus 257 e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 257 DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp TCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCC
Confidence 11111 12222211 012245777777777788899999999999 32 12244444322222122 34
Q ss_pred cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
+.+.|..+|+...+.+ +-+...+...++...+.|+.+.|..+|++.. .....|...+..-...|+.+.+..++++.
T Consensus 335 d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6999999999999853 3334566777887888999999999999983 36788998888888899999999999988
Q ss_pred Hh
Q 011587 415 LQ 416 (482)
Q Consensus 415 ~~ 416 (482)
.+
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-07 Score=78.07 Aligned_cols=175 Identities=9% Similarity=-0.072 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-CCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 011587 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHG----KGNEAIRLLD 309 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~ 309 (482)
+|.+.|++..+.| +...+..+...|...+++++|..+|++..+ .+...+..|...|.. + ++++|...|+
T Consensus 4 eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3556666666655 566677778888888888888888887765 356677777777776 6 7888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCC-cCHHHHHHHHHHHhc----cCCHHHHHHHHH
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVE-PHIKHYSCIVDLLGR----AGHLEEAYNFIM 380 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 380 (482)
+..+.| +...+..|...|.. .+++++|..+|++..+. +.. .+...+..|...|.. .+++++|..+|+
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 887765 55666777777776 78889999998888873 321 126677778888877 778999999988
Q ss_pred cC-CCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHhcCC
Q 011587 381 GI-PIKPDAILWRSLLSACNVH-G-----DVALGEKVGKILLQLQP 419 (482)
Q Consensus 381 ~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 419 (482)
+. ....+...+..|...|... | +.++|..+|++..+.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 3334556677777777543 3 89999999999988877
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-07 Score=80.57 Aligned_cols=183 Identities=15% Similarity=0.047 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH----HHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV----LTWT 289 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 289 (482)
+...+..+...+.+.|++++|...|+++.+.....+.....+..+..+|.+.|++++|+..|+++.+ |+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556667788899999999999999999987631112245788899999999999999999999874 322 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 011587 290 AMATGMAI------------------HGKGNEAIRLLDSMRDCGVKPNAV-TFTSLFAACCHAGLVEEGLHLFDNMKSKW 350 (482)
Q Consensus 290 ~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 350 (482)
.+..++.. .|++++|...|+++.+.. |+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 578999999999998863 4332 2221111 011111111
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+...+|
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 12235667888999999999999987 33343 24677888999999999999999999988887
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.6e-06 Score=74.52 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=173.6
Q ss_pred ccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccC--chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH----H
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLG--LLEFGACVHGYMEKTFYMPENDVFIGTALVDMY----S 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~----~ 265 (482)
....++|+++++.+. .+.|+ ...|+.--..+...+ +++++.+.++.++... |.+..+|+.-...+ .
T Consensus 46 ~e~s~~aL~~t~~~L----~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 46 EEYSERALHITELGI----NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp TCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHH
Confidence 445578999999887 44564 456777777777888 9999999999999988 77778887766666 5
Q ss_pred cC---CChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc--
Q 011587 266 KC---GCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGN--EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-- 335 (482)
Q Consensus 266 ~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-- 335 (482)
.. +++++++++++++.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 55 789999999999975 47788888888888888888 999999999987655 77777766666666666
Q ss_pred ----HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH-HHHHHHcC-CC----CCCHHHHHHHHHHHHhcCCHh
Q 011587 336 ----VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE-AYNFIMGI-PI----KPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 336 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~ 405 (482)
++++.+.++.+... .+-|...|+.+...+.+.|+... +.++..+. .. ..+...+..+...+.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 89999999999883 45678889888888888887544 55677765 22 347888999999999999999
Q ss_pred HHHHHHHHHHh-cCC
Q 011587 406 LGEKVGKILLQ-LQP 419 (482)
Q Consensus 406 ~a~~~~~~~~~-~~~ 419 (482)
+|.++++.+.+ .+|
T Consensus 276 ~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 276 ESRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhccCh
Confidence 99999999987 677
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=78.13 Aligned_cols=158 Identities=13% Similarity=0.032 Sum_probs=122.4
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHH-H
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATG-M 295 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~ 295 (482)
.+......+...|++++|...++++.+.. |.+...+..+..++...|++++|+..|++..+ |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 35566677888999999999999988877 67888999999999999999999999999875 433333322212 2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-cCHHHHHHHHHHHhccCCHHH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE-PHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 374 (482)
...+...+|...+++..+... -+...+..+..++...|++++|...|+++.+. .-. .+...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCCCc
Confidence 233344567888998887642 25778888999999999999999999999874 221 235688899999999999999
Q ss_pred HHHHHHc
Q 011587 375 AYNFIMG 381 (482)
Q Consensus 375 A~~~~~~ 381 (482)
|...|++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.2e-08 Score=77.38 Aligned_cols=134 Identities=8% Similarity=-0.084 Sum_probs=88.1
Q ss_pred ccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 271 (482)
.|++++|+..++... ...| +...+..+...|.+.|++++|.+.++++++.. |.+..+|..+..+|.+.|+++
T Consensus 10 ~~~~e~ai~~~~~a~----~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 10 KADVERYIASVQGST----PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp HHHHHHHHHHHHHHS----CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHH
T ss_pred cChHHHHHHHHHHhc----ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCchH
Confidence 677888888887764 2334 33455667777778888888888888877776 667777777777777777777
Q ss_pred HHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 272 NALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRL-LDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 272 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
+|+..|++..+ | +..+|..+...|.+.|++++|... +++..+..+ -+...|......+...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 77777777653 3 456677777777777777655544 466655422 14445554444444444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.8e-07 Score=76.84 Aligned_cols=129 Identities=10% Similarity=-0.026 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
.+..+...+...|++++|...|++...++..+|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455667778888888888888888887788888888888888888888888888887754 3356777778888888888
Q ss_pred HHHHHHHHHHhHHhcCCCcCH----------------HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC
Q 011587 336 VEEGLHLFDNMKSKWGVEPHI----------------KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD 387 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 387 (482)
+++|...|++..+. .+.+. ..+..+..+|...|++++|.+.|++. .+.|+
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 88888888888773 22222 55666666666677777776666665 44443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-06 Score=77.69 Aligned_cols=170 Identities=8% Similarity=-0.053 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCcC--H
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN-----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG--VEPH--I 356 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 356 (482)
..+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888899999988887776532211 12234455566778899999999988875211 1111 4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC----CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPD-----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
.+++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++++...+.+ ...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~--~~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--SMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--BCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--cHH
Confidence 58888899999999999998888765 11122 25788899999999999999999999987643110 000
Q ss_pred CCchhHHHHHHHHHhCCCchHH-HHHHHHhH
Q 011587 428 CTSEDFVALSNIYASAERWPDV-ESVRKQMK 457 (482)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 457 (482)
.-..+|..+..+|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1256788999999999999999 77666643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.8e-07 Score=79.52 Aligned_cols=166 Identities=10% Similarity=-0.078 Sum_probs=122.2
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC-
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N------VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV---KPN- 319 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~- 319 (482)
....+...+..+...|++++|.+.+++..+ + . ...+..+...+...|++++|...+++..+... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344556677888899999999999876643 1 1 12344466677888999999999998875321 122
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCCCc--CHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCC
Q 011587 320 -AVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEP--HIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP 386 (482)
Q Consensus 320 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p 386 (482)
..+++.+...|...|++++|...+++..+ ..+..+ ...++..+...|...|++++|.+.+++. +...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 45788888999999999999999999873 211111 1258888999999999999999998876 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHhHH-HHHHHHHHhcC
Q 011587 387 -DAILWRSLLSACNVHGDVALG-EKVGKILLQLQ 418 (482)
Q Consensus 387 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~ 418 (482)
-..+|..+...|...|++++| ...++++....
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 266788889999999999999 78788877643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=7.2e-06 Score=73.48 Aligned_cols=196 Identities=12% Similarity=-0.032 Sum_probs=137.7
Q ss_pred CCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchh---HHHHHHHHHHcCCChHHHHHHHHhccCC-----
Q 011587 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF---IGTALVDMYSKCGCLDNALLIFSRMREK----- 283 (482)
Q Consensus 212 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 283 (482)
...|+..++..+...+.-.-+ .+..... ..+.. .+...+..+...|++++|..++++..+.
T Consensus 41 ~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~ 109 (293)
T 3u3w_A 41 AVYPSMDILQGIAAKLQIPII---------HFYEVLI--YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP 109 (293)
T ss_dssp SCCCCHHHHHHHHHHHTCCTH---------HHHHTTT--SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCHHHHHHHHHHhCcCHH---------HHhCCCC--CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCCh
Confidence 346777777777766643321 1111111 12222 2333477889999999999999987642
Q ss_pred C----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----
Q 011587 284 N----VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PN----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKW---- 350 (482)
Q Consensus 284 ~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 350 (482)
+ ...+..+...+...|++++|+..|++..+.... ++ ..+++.+...|...|++++|...|+++.+..
T Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 189 (293)
T 3u3w_A 110 EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 1 123345667777888999999999999874322 22 2368889999999999999999999988521
Q ss_pred CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCCC-HHHHHHHHHHHHhcC-CHhHHHHHHHHHHhcC
Q 011587 351 GVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKPD-AILWRSLLSACNVHG-DVALGEKVGKILLQLQ 418 (482)
Q Consensus 351 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 418 (482)
+..+ ...++..+...|.+.|++++|.+.+++. +..+. ..+|..+..++.+.| ++++|...+++++...
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 1112 2347888999999999999999988766 22232 678888999999999 4699999999988643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.3e-06 Score=73.45 Aligned_cols=210 Identities=8% Similarity=-0.020 Sum_probs=141.6
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL---TWTAMATGMAIHGKGNEAIRLLDSMRDCG 315 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g 315 (482)
.+..+..... .|+..+...+...+.-.- ..++..-...+.. .+...+..+...|++++|..++++..+..
T Consensus 33 ~~s~~e~g~~--~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 33 EVSRIESGAV--YPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHHHHTTSC--CCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCC--CCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 3444444444 346665555555544221 1233332223232 33344677889999999999999988743
Q ss_pred C-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC----
Q 011587 316 V-KPNA----VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI---- 382 (482)
Q Consensus 316 ~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---- 382 (482)
. .|+. ..+..+...+...+++++|...++++.+...-.++ ..+++.+...|...|++++|...|++.
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 106 EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2232 23345667777888999999999999873111222 347899999999999999999888776
Q ss_pred -CC---CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC-chHHHHHHHHh
Q 011587 383 -PI---KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER-WPDVESVRKQM 456 (482)
Q Consensus 383 -~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m 456 (482)
.. .+ ...++..+...|.+.|++++|...++++++..++.+ ....-..+|..+..+|.+.|+ +++|...+++.
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 12 234778899999999999999999999988654210 000125688899999999995 69999888776
Q ss_pred H
Q 011587 457 K 457 (482)
Q Consensus 457 ~ 457 (482)
.
T Consensus 264 l 264 (293)
T 3u3w_A 264 S 264 (293)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-06 Score=79.84 Aligned_cols=358 Identities=8% Similarity=-0.047 Sum_probs=206.3
Q ss_pred ChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHH
Q 011587 58 STKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137 (482)
Q Consensus 58 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 137 (482)
+++.|+.+|+.... ..-.|+++.+.++|++.+.. .| +...|...++...+.+.. .+....+|+..+.
T Consensus 10 ~i~~aR~vyer~l~--------~~P~~~~e~~~~iferal~~--~p-s~~LW~~Y~~f~~~~~~~--~~~i~~~fe~al~ 76 (493)
T 2uy1_A 10 ELSSPSAIMEHARR--------LYMSKDYRSLESLFGRCLKK--SY-NLDLWMLYIEYVRKVSQK--KFKLYEVYEFTLG 76 (493)
T ss_dssp --CCHHHHHHHHHH--------HHHTTCHHHHHHHHHHHSTT--CC-CHHHHHHHHHHHHHHC------CTHHHHHHHHH
T ss_pred chHHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence 36666666665420 11118888899999888873 36 888888888877776622 4667788888776
Q ss_pred h-CCC-CchhHHHHHHHHHHh----CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccc--------------hH
Q 011587 138 R-GFM-FNVLVATTLIHFYAS----NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC--------------AF 197 (482)
Q Consensus 138 ~-~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~--------------~~ 197 (482)
. |.. .+...|...+..+.. .++++.+..+|++...-....+..+-..|...-. ..+ +.
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~--~~~~~~~~~~~~~~~~~y~ 154 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL--ELNKITGKKIVGDTLPIFQ 154 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHH
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH--HhccccHHHHHHHHhHHHH
Confidence 4 433 356777777776543 3567788888888765222223333333333000 111 12
Q ss_pred HHHHHHHHhhhccCCCC-cCHHHHHHHHHHhhcc--Cc-----hHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 198 NALVLFRDMLVDVSGVK-PTDTTMVCVLSVSSQL--GL-----LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~-p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
.|..+++.+. . ..+ .+...|...+..-... +- .+.+..+|++++... +.....|...+..+.+.|+
T Consensus 155 ~ar~~y~~~~--~-~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 155 SSFQRYQQIQ--P-LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHH--H-HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--H-HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCC
Confidence 2333343332 1 000 1223444444332221 11 234567888887765 5567788888888888888
Q ss_pred hHHHHHHHHhccC-CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCC---CHHHHHHHHHHHhccCc
Q 011587 270 LDNALLIFSRMRE-KNVL-TWTAMATGMAIHGKGNEAIRLLDSMRDC---------GVKP---NAVTFTSLFAACCHAGL 335 (482)
Q Consensus 270 ~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---------g~~p---~~~~~~~ll~~~~~~~~ 335 (482)
.+.|..+|++... |... .|. .|+...+.++. ++.+.+. +..+ ....|...+....+.++
T Consensus 229 ~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 8888888887653 3222 221 23322222222 2222221 0011 12345555555556778
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc-CCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA-GHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
.+.|..+|+++ +. . ..+...|......-... ++.+.|..+|+.. ...-+...+...+......|+.+.|..+|+
T Consensus 302 ~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999988 42 1 23444454333222223 3688999998876 222234556667777788899999999998
Q ss_pred HHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
++ . .....|...+..-...|+.+.+..++++..+
T Consensus 379 r~----~--------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RL----E--------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HS----C--------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HH----H--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 86 2 3466788888877888999999888887763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.8e-07 Score=80.88 Aligned_cols=223 Identities=11% Similarity=-0.072 Sum_probs=153.8
Q ss_pred CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.|++++|.+++++..+..... .+.. .++++.|...|... ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~------~~~~-----~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS------FMKW-----KPDYDSAASEYAKA-----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC------SSSC-----SCCHHHHHHHHHHH-----------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc------ccCC-----CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHH
Confidence 466777777777665321110 0111 46677777777765 3567788999999
Q ss_pred HHHHHHHHHhCCC---CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-------C--CHHHHHHHHHHHHhcCChHHH
Q 011587 237 ACVHGYMEKTFYM---PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-------K--NVLTWTAMATGMAIHGKGNEA 304 (482)
Q Consensus 237 ~~~~~~~~~~~~~---p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a 304 (482)
...+.++.+.... +.....+++.+...|.+.|++++|+..|++..+ + -..+++.+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 9999988764310 011245788899999999999999999987653 1 13577888888988 999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCcC-HHHHHHHHHHHhccCCHHHH
Q 011587 305 IRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW---GVEPH-IKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 305 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A 375 (482)
+..|++..+. |-.+ ...++..+...|.+.|++++|...|++..+.. +..+. ...+..+...+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988653 1111 14578888899999999999999999988731 11111 23666777788888999999
Q ss_pred HHHHHcCCCCCC------HHHHHHHHHHHHhcCCHhHHHH
Q 011587 376 YNFIMGIPIKPD------AILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 376 ~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
...|++.-..|+ ......++.++ ..|+.+.+..
T Consensus 215 ~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999987533332 12344555555 5677666555
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-06 Score=73.70 Aligned_cols=128 Identities=7% Similarity=-0.062 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
..+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+. .+.+...+..+...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 345667778889999999999999874 568889999999999999999999999999984 35567889999999
Q ss_pred HhccCCHHHHHHHHHcC-CCCC-----------------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 366 LGRAGHLEEAYNFIMGI-PIKP-----------------DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|...|++++|.+.|++. ...| ....+..+..++...|++++|...++++.+..|
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999877 2222 236788899999999999999999999999988
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.7e-07 Score=72.80 Aligned_cols=127 Identities=6% Similarity=-0.019 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666777777777777777663 2335666777777777777777777777766 2233 566777788888
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHH--HHHHhCCCchHHHHHHHHhH
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS--NIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~ 457 (482)
...|++++|...++++.+..| .+...+..+. ..+.+.|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP--------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888888887 5555554333 34777888888888877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.8e-08 Score=85.46 Aligned_cols=92 Identities=15% Similarity=-0.113 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATG 294 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 294 (482)
..+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344444444445555555555555544443 33444444444444444444444444444432 133344444444
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011587 295 MAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~ 312 (482)
|...|++++|...|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 444444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=74.28 Aligned_cols=94 Identities=7% Similarity=-0.050 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
..+..+...+.+.|++++|...|++. .+.| +...|..+..+|...|++++|...|+++++..| .++..|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--------~~~~~~~ 108 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--------NDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------SCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--------CCcHHHH
Confidence 34445555555556666666555555 2233 455555555555666666666666666666665 4555555
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHh
Q 011587 435 ALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
.+..+|.+.|++++|...|++..+
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666655554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.2e-07 Score=69.46 Aligned_cols=108 Identities=9% Similarity=-0.006 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
..+......|.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45666677788888888888888888773 3456778888888888888888888888876 3344 677888888888
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
...|++++|.+.|+++++..| .+...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P--------~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDP--------SNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCc--------CCHHHHHHHHH
Confidence 899999999999999999888 67666665554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=66.84 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSA 397 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 397 (482)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|..+++++ .. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666677777777777777777663 2345566677777777777777777777766 22 2356677777778
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
+...|++++|...++++.+..| .+...+..+..++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP--------NNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHhc
Confidence 8888888888888888888877 5666666666665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.8e-07 Score=67.91 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSA 397 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 397 (482)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666666777777777777777663 2335666777777777777777777777665 2233 46677777778
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
+...|++++|...++++.+..| .+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP--------DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888877 5677777777777777765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=7.5e-06 Score=73.99 Aligned_cols=222 Identities=11% Similarity=0.034 Sum_probs=153.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHhccC---CCHHHHHHHHHHHHhc-C-ChH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNALLIFSRMRE---KNVLTWTAMATGMAIH-G-KGN 302 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~ 302 (482)
+.+..++|.++++.++... +.+..+|+.--..+...| ++++++++++.+.. .+..+|+.-...+.+. + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3344567888888888887 778888888888888888 58999999988874 3567777776666665 6 788
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--------HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC---
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE--------EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH--- 371 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 371 (482)
+++++++++.+...+ |...++.-...+.+.+..+ ++.+.++++.+. -+-|...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccccc
Confidence 999999998876544 6666665555555555555 888888888884 34577788888877877776
Q ss_pred ----HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCH--------------------hHHHHHHHHHHhcCCCccccc
Q 011587 372 ----LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDV--------------------ALGEKVGKILLQLQPEVTFVD 425 (482)
Q Consensus 372 ----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~~~~~~~~ 425 (482)
++++++.+++. ...| |...|+-+-..+.+.|.. ........++...... + ..
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP-E-DT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC-S-SC
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc-c-cc
Confidence 67888888776 3345 778887766666665543 2222222222222100 0 00
Q ss_pred ccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
-.+++.....++..|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 126778888999999999999999999999863
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=68.06 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+...+..+...+...|++++|...+++..+ ..+.+...+..+...|...|++++|.+.+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345566666666677777777777777665 22335666677777777777777777777665 2223 5667777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
.+...|++++|...++++.+..| .+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS--------SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG--------GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHhc
Confidence 88888888888888888888877 56667777777766654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-07 Score=74.12 Aligned_cols=98 Identities=11% Similarity=-0.023 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSA 397 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 397 (482)
...+..+...+.+.|++++|...|++.... -+.+...|..+..+|...|++++|++.|++. .+.| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345555666677777777777777777662 2345666667777777777777777777766 3333 45566666777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCC
Q 011587 398 CNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...|++++|...|+++++..|
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHCc
Confidence 7777777777777777777666
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.9e-07 Score=68.77 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
...+......|.+.|++++|++.|++. .+.| +...|..+..++.+.|++++|...++++++.+| .+...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------KFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--------hhhHHH
Confidence 456778889999999999999999987 4445 788999999999999999999999999999999 789999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 434 VALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
..+..++...|++++|...|++..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999987643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.5e-07 Score=74.87 Aligned_cols=134 Identities=11% Similarity=-0.004 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCc--
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRD----CGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEP-- 354 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-- 354 (482)
..++..+...+...|++++|...+++..+ .+..| ....+..+...+...|++++|...+++..+. .+-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34445555555555555555555554433 11111 2234444555555566666666555555442 11011
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
....+..+...+...|++++|...+++. ....+ ..++..+...+...|++++|...++++.+..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1234455555566666666665555543 00111 2234555666666777777777776666543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-06 Score=72.51 Aligned_cols=184 Identities=9% Similarity=-0.109 Sum_probs=139.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHH-------HHHHHcCCChHHHHHHHHhccC--C-------C--------
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTAL-------VDMYSKCGCLDNALLIFSRMRE--K-------N-------- 284 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~--~-------~-------- 284 (482)
..++...|.+.|.++.+.. |.....|..+ ...+.+.++..+++..+.+-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5789999999999999988 7778888877 5666666666666666665543 1 1
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC--
Q 011587 285 -------VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-- 355 (482)
Q Consensus 285 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 355 (482)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+. . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 1234456677889999999999999988754 44435555666788999999999999866551 1 221
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC--CCC-CC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI--PIK-PD--AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+..+..++...|++++|++.|++. +-. |. .........++.+.|+.++|..+|+++...+|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 346778889999999999999999988 322 43 33555667788999999999999999999988
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-06 Score=67.67 Aligned_cols=127 Identities=12% Similarity=-0.030 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATG 294 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 294 (482)
..+..+...+...|+++.|...+++..+.. +.+..++..+...+...|++++|...+++..+ .+..+|..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566666777777777777777777765 55666777777777777777777777776653 345566677777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTF--TSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
+...|++++|...|++..+.... +...+ ......+.+.|++++|...+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777777664322 33333 2233335566677777766665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=77.73 Aligned_cols=162 Identities=9% Similarity=-0.126 Sum_probs=87.3
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
+...+..+...+.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|...+++..+... -+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344555566666666666666666666542 2 455666666666666666666666666655432 244555566666
Q ss_pred HhccCcHHHHHHHHHHhHHhc-----------------------------CCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKW-----------------------------GVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
+...|++++|...|++..+.. ..+.+......+ ..+ ..|+.++|.+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~ 159 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQ 159 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTS
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHH
Confidence 666666666666666655421 011111111111 111 2456666766666
Q ss_pred cC-CCCCCHHHH-HHHHHHHHhc-CCHhHHHHHHHHHHhc
Q 011587 381 GI-PIKPDAILW-RSLLSACNVH-GDVALGEKVGKILLQL 417 (482)
Q Consensus 381 ~~-~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~~ 417 (482)
+. ...|+.... ..+...+.+. +.+++|.++|+++.+.
T Consensus 160 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 160 RNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55 455654333 2232233333 5677777788776653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.6e-05 Score=67.09 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=162.9
Q ss_pred ccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccC-chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC-C-
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLG-LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC-G- 268 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-g- 268 (482)
.+..++|+++++.+. .+.| +...|+.--..+...+ .++++...++.++... +.+..+|+.-...+.+. +
T Consensus 67 ~e~se~AL~lt~~~L----~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 67 EEKSERALELTEIIV----RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp TCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHH----HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCC
Confidence 556678999999987 3445 4456777777777777 5999999999999888 77888998888888776 7
Q ss_pred ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc--
Q 011587 269 CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGN--------EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-- 335 (482)
Q Consensus 269 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-- 335 (482)
++++++++++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 89999999999986 36677776665555555565 999999999987654 78888888888777775
Q ss_pred -----HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH--------------------HHHHHHHHcC-CC-----
Q 011587 336 -----VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL--------------------EEAYNFIMGI-PI----- 384 (482)
Q Consensus 336 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~----- 384 (482)
++++.+.++++... .+-|...|+-+-..+.+.|+. ....++..++ +.
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 68899999888873 455777887776667666653 3344444444 21
Q ss_pred --CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-hcCC
Q 011587 385 --KPDAILWRSLLSACNVHGDVALGEKVGKILL-QLQP 419 (482)
Q Consensus 385 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~ 419 (482)
.+....+..++..|...|+.++|.++++.+. +.+|
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 3578888999999999999999999999987 4455
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=80.71 Aligned_cols=159 Identities=13% Similarity=-0.010 Sum_probs=104.1
Q ss_pred CChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 268 GCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 268 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
+++++|...|+...+ | +...|..+...|.+.|++++|+..|++..+...... .+ ..+.+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--~~-----------~~~~~~~~-- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--SF-----------SNEEAQKA-- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--CC-----------CSHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc--cC-----------ChHHHHHH--
Confidence 344455554444432 2 445677777777777888888888877766432211 00 00111100
Q ss_pred HhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcc
Q 011587 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422 (482)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 422 (482)
. +.....|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...|+++++..|
T Consensus 192 --~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--- 261 (336)
T 1p5q_A 192 --Q-----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--- 261 (336)
T ss_dssp --H-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---
T ss_pred --H-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---
Confidence 0 011356777777888888888888888776 3334 677788888888888888888888888888888
Q ss_pred cccccCCchhHHHHHHHHHhCCCchHHH-HHHHHh
Q 011587 423 FVDVACTSEDFVALSNIYASAERWPDVE-SVRKQM 456 (482)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m 456 (482)
.+...+..+..++.+.|++++|. .+++.|
T Consensus 262 -----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 262 -----NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888873 344544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.8e-06 Score=63.90 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
.+..+...+...|++++|.++|+++.+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 344444444444444444444444331 133344444444444444555544444444432 1233444444444445
Q ss_pred cCcHHHHHHHHHHhHH
Q 011587 333 AGLVEEGLHLFDNMKS 348 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~ 348 (482)
.|++++|...++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555555554444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=72.12 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=88.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---------CCHHHHHHHHHHHHhcC
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---------KNVLTWTAMATGMAIHG 299 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~ 299 (482)
..|++++|.++++.+.. . |.....++..+...+...|++++|...+++..+ ....++..+...|...|
T Consensus 4 ~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT-S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC-C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35566666664433322 1 134555666666666666777666666666543 12345666667777777
Q ss_pred ChHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhcc
Q 011587 300 KGNEAIRLLDSMRDC----GVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRA 369 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~ 369 (482)
++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777765442 2111 2344666667777778888888777776642111111 23456677777788
Q ss_pred CCHHHHHHHHHcC
Q 011587 370 GHLEEAYNFIMGI 382 (482)
Q Consensus 370 g~~~~A~~~~~~~ 382 (482)
|++++|.+.+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 8888887777653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.6e-07 Score=73.14 Aligned_cols=122 Identities=10% Similarity=0.081 Sum_probs=89.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH-HhccCCH-
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL-LGRAGHL- 372 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~- 372 (482)
+...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+. .+.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 345677888888888877654 336677888888888888888888888888873 23456677777777 7778887
Q ss_pred -HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 373 -EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 373 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++|...+++. ...| +...+..+...+...|++++|...++++++..|
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8888888877 3334 567777788888888888888888888888877
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.1e-06 Score=71.29 Aligned_cols=123 Identities=11% Similarity=-0.047 Sum_probs=67.5
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC-----HHHHHHHHHHHHh
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-----VLTWTAMATGMAI 297 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~ 297 (482)
....+...|++++|.++|+.+...+ +.+. ....+...+.+.+++++|+..|+...+.. ...+..+..++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~---p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG---SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT---CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC---CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 4455556666666666666555443 2233 44555556666666666666666554321 2245555566666
Q ss_pred cCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 298 HGKGNEAIRLLDSMRDCGVKPN--AVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 298 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666653322132 223344445555666666666666666653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=69.01 Aligned_cols=96 Identities=11% Similarity=-0.054 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
.+..+...+.+.|++++|...|+++... -+.+...|..+..+|...|++++|...|++. .+.| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4444555566666667776666666652 2335556666666666666666666666665 2223 4455555666666
Q ss_pred hcCCHhHHHHHHHHHHhcCC
Q 011587 400 VHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~ 419 (482)
..|++++|...|+++++..|
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 66666666666666666655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.1e-06 Score=67.18 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSA 397 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 397 (482)
...+..+...+.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|++.|++. .+.| +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 446667778888999999999999999883 3456788888999999999999999999888 4445 56788888899
Q ss_pred HHhcCCHhHHHHHHHHHHhcCC
Q 011587 398 CNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|...|++++|...|+++++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999887
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-07 Score=78.03 Aligned_cols=171 Identities=10% Similarity=-0.034 Sum_probs=94.9
Q ss_pred HHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 259 ALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
..+......|+++++.+.|+...+ .....+..+...+...|++++|...|++..+.... +. .+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~--------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ--------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH---------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh---------
Confidence 344445555666666666654332 13445666677777777888888877777664211 11 00000
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKI 413 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 413 (482)
.+..-.. ......+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|...|++
T Consensus 78 ------~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 78 ------ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp ------HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000000 001356667777777888888888877766 3233 667777788888888888888888888
Q ss_pred HHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH-HHHHHhHh
Q 011587 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE-SVRKQMKV 458 (482)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 458 (482)
+++..| .+...+..+..++...++.+++. ..+..|-.
T Consensus 148 al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNP--------NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHST--------TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888 67778888888887777777766 44555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=63.76 Aligned_cols=97 Identities=10% Similarity=0.057 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccC--Cchh
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC--TSED 432 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~ 432 (482)
..+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++++..+ . +...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~ 78 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE--------DEYNKDV 78 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--------CTTCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--------ccchHHH
Confidence 34555566666666777766666655 222 2556666677777777777777777777777766 4 6667
Q ss_pred HHHHHHHHHhC-CCchHHHHHHHHhHhcCC
Q 011587 433 FVALSNIYASA-ERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 433 ~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~ 461 (482)
+..+..++.+. |++++|.+.+++......
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 77777777777 777777777777665443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=68.56 Aligned_cols=92 Identities=16% Similarity=-0.074 Sum_probs=42.5
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGM 295 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 295 (482)
.+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++..+ .+...|..+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444444444555555555555544444 33444444444444444444444444444431 1333444444444
Q ss_pred HhcCChHHHHHHHHHHHh
Q 011587 296 AIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~ 313 (482)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.7e-06 Score=67.79 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=68.4
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHH-HHhcCCh--
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATG-MAIHGKG-- 301 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~-~~~~~~~-- 301 (482)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+ .+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34556666666666666655 45556666666666666666666666666553 244555555555 5566666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
++|...+++..+... -+...+..+...+...|++++|...|+++.+
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666666665432 2345555566666666666666666666665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.7e-06 Score=63.84 Aligned_cols=93 Identities=9% Similarity=-0.021 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 331 (482)
..+..+...+...|++++|...|++..+ .+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3344444444444444444444444332 133344444444444444444444444444432 113344444444444
Q ss_pred ccCcHHHHHHHHHHhHH
Q 011587 332 HAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~ 348 (482)
+.|++++|...|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=8.5e-06 Score=61.17 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555566666666666666666652 2334556666666666666666666666655 2223 456666667777
Q ss_pred HhcCCHhHHHHHHHHHHhcCC
Q 011587 399 NVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|++++|...++++.+..|
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 777777777777777777766
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5.3e-06 Score=63.68 Aligned_cols=112 Identities=9% Similarity=-0.033 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 011587 257 GTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333 (482)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 333 (482)
+..+...+...|++++|...|++..+ .+...+..+..++...|++++|...+++..+.. +.+...+..+...+...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 33444444444444444444444331 133344444444444555555555555444432 11334444444555555
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
|++++|...+++..+. .+.+...+..+...+.+.|+
T Consensus 94 ~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 94 NKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 5555555555555442 12234444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-06 Score=64.23 Aligned_cols=95 Identities=9% Similarity=-0.074 Sum_probs=53.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
.+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4444555555666666666666666552 2334555555556666666666666655554 2223 3455555555566
Q ss_pred hcCCHhHHHHHHHHHHhcC
Q 011587 400 VHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~ 418 (482)
..|++++|...++++++..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 6666666666666665555
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.8e-06 Score=63.86 Aligned_cols=95 Identities=9% Similarity=-0.024 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+. .+.+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4567788889999999999999999998864 336788999999999999999999999999983 3456788999999
Q ss_pred HHhccCCHHHHHHHHHcC
Q 011587 365 LLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~ 382 (482)
++...|++++|.+.|++.
T Consensus 81 ~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 81 AQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHH
Confidence 999999999999999887
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.8e-06 Score=75.67 Aligned_cols=140 Identities=12% Similarity=-0.034 Sum_probs=90.2
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC----------------HHHHHHH
Q 011587 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN----------------VLTWTAM 291 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l 291 (482)
.++++.|...++...+.. +.+...+..+...|.+.|++++|+..|++..+ |+ ..+|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~---p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK---LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 344555655555544443 44677889999999999999999999998874 32 3566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
..+|.+.|++++|+..+++..+... .+...+..+..+|...|++++|...|+++.+. .+.+...+..+...+.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665432 24555666666666666666666666666652 23344555555555555555
Q ss_pred HHHH
Q 011587 372 LEEA 375 (482)
Q Consensus 372 ~~~A 375 (482)
.++|
T Consensus 280 ~~~a 283 (336)
T 1p5q_A 280 QLAR 283 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=9.2e-06 Score=63.18 Aligned_cols=99 Identities=7% Similarity=-0.172 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++. .+.| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5566667777777777777777777777763 2345666777777777777777777777666 2233 5666777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++...|++++|...|+++++..|
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHCh
Confidence 77777777777777777777665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-06 Score=67.70 Aligned_cols=99 Identities=13% Similarity=-0.001 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888888999999999999999999984 3447888999999999999999999999988 4445 6888999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++...|++++|...|+++++..|
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=73.14 Aligned_cols=150 Identities=12% Similarity=0.005 Sum_probs=90.2
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCH------------
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNV------------ 285 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------------ 285 (482)
+..+......|+++.+.+.++.-.... ......+..+...+...|++++|...|++..+ .+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp --------------CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 344555666777777777776544333 33556778889999999999999999998864 122
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHH
Q 011587 286 ----LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361 (482)
Q Consensus 286 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 361 (482)
.+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .+-+...+..
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 161 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 566667777777777777777777776653 235566666667777777777777777777662 2334555555
Q ss_pred HHHHHhccCCHHHHH
Q 011587 362 IVDLLGRAGHLEEAY 376 (482)
Q Consensus 362 li~~~~~~g~~~~A~ 376 (482)
+...+...++.+++.
T Consensus 162 l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 162 YELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555555444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-06 Score=65.76 Aligned_cols=104 Identities=15% Similarity=0.065 Sum_probs=85.1
Q ss_pred HHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 276 IFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 276 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
.|+++.+. +...+..+...+.+.|++++|...|++...... .+...+..+..++...|++++|...|++..+. .
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM--D 82 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--C
Confidence 44555542 445667778889999999999999999988643 37778888999999999999999999999983 3
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
+.+...+..+..+|...|++++|.+.|++.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456778888999999999999999999887
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=60.67 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchh
Q 011587 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432 (482)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..| .+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--------DWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--------ccHHH
Confidence 3457778888999999999999999987 3334 788888899999999999999999999999998 78889
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 433 FVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+..+..++.+.|++++|...+++..+.+
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-05 Score=63.28 Aligned_cols=111 Identities=11% Similarity=-0.079 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWR 392 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 392 (482)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4566667777777788888888888877762 344 566777777777788888887777766 3334 566777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
.+..++...|++++|...++++++..| .+...+..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEP--------KNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHH
Confidence 777777778888888888888877777 4555555554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.3e-06 Score=64.38 Aligned_cols=92 Identities=14% Similarity=-0.026 Sum_probs=66.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (482)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++..| .+...+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------~~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------KDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHH
Confidence 344556667777777777777766 3334 566677777777777777777777777777777 567777777
Q ss_pred HHHHHhCCCchHHHHHHHHhHh
Q 011587 437 SNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..++.+.|++++|...+++..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777664
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-06 Score=64.87 Aligned_cols=99 Identities=6% Similarity=-0.015 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC----
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT---- 429 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 429 (482)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++..|+.. ++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-----ADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-----hhhHHH
Confidence 446777888999999999999999887 4455 678899999999999999999999999999877210 11
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 430 SEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
..+|..+..++...|++++|++.+++....
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 246778888999999999999999987753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-05 Score=65.30 Aligned_cols=96 Identities=11% Similarity=-0.059 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
+...|..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|...+++..+. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456788899999999999999999999988643 37788899999999999999999999999984 345688999999
Q ss_pred HHHhccCCHHHHHHHHHcC
Q 011587 364 DLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~ 382 (482)
.+|...|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999999987
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-05 Score=60.47 Aligned_cols=92 Identities=4% Similarity=-0.056 Sum_probs=59.4
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC--------HHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN--------VLTW 288 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~ 288 (482)
.+..+.+.+.+.|++++|...|+++++.. |.+...|..+..+|.+.|++++|++.|++..+ |+ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566667777777777777777777665 55666677777777777777777777766653 11 1245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555666666666666666666554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00045 Score=62.07 Aligned_cols=180 Identities=13% Similarity=0.021 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC--ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCC-hHHHHH
Q 011587 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG--CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGK-GNEAIR 306 (482)
Q Consensus 233 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~ 306 (482)
++++..+++.+.... |.+..+|+.-..++.+.| ++++++.+++++.+ .|..+|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 566777777777776 667778877777777777 47888888888874 466777777666677777 578888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc---
Q 011587 307 LLDSMRDCGVKPNAVTFTSLFAACCHA--------------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA--- 369 (482)
Q Consensus 307 ~~~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 369 (482)
.++++.+..+. |...|+.....+.+. +.++++.+.+...... .+-|...|+-+-..+.+.
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCc
Confidence 88888876544 666666555544443 4577888888888873 355666776555455444
Q ss_pred --------CCHHHHHHHHHcC-CCCCCHHHHHHHHHH-----HHhcCCHhHHHHHHHHHHhcCC
Q 011587 370 --------GHLEEAYNFIMGI-PIKPDAILWRSLLSA-----CNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 370 --------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+.++++++.++++ .+.|+. .|+.+..+ ....|..+++...+.++++.+|
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 3467888888877 555653 34322222 2246778899999999999999
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-05 Score=60.77 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 358 (482)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 36678889999999999999999999999886 455 677888889999999999999999999884 3446788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+..+..+|...|++++|.+.|++. ...| +...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 889999999999999999999987 4445 4444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.9e-05 Score=70.70 Aligned_cols=191 Identities=8% Similarity=-0.114 Sum_probs=106.3
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCC--------------chhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCH-
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPEN--------------DVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNV- 285 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~- 285 (482)
.+.+.|++++|.+.+..+++....... ....+..++..|...|++++|.+++..+.+ ++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345566667777766666654321000 001355667777777777777777766543 111
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----
Q 011587 286 ---LTWTAMATGMAIHGKGNEAIRLLDSMRD----CGVKPN-AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE---- 353 (482)
Q Consensus 286 ---~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---- 353 (482)
.+.+.+-..+...|++++|..+++.... .+..+. ..++..+...|...|++++|..+++++.....-.
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1233333344455667777777666532 222222 3455666677777777777777777665431111
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.....+..++..|...|++++|..++++. +..+. ...+..+...+...|++++|...|.++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11346666677777777777777766554 11111 23445555556667777777776666654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=62.00 Aligned_cols=97 Identities=11% Similarity=-0.065 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
.+...|..+...+...|++++|...|++...... .+...+..+..++...|++++|...+++..+. .+.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 4677889999999999999999999999988643 36788889999999999999999999999984 34567889999
Q ss_pred HHHHhccCCHHHHHHHHHcC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~ 382 (482)
..+|...|++++|...|++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999887
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00042 Score=62.28 Aligned_cols=217 Identities=12% Similarity=0.023 Sum_probs=156.9
Q ss_pred ccCch-HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC----------hHHHHHHHHhccC---CCHHHHHHHHHH
Q 011587 229 QLGLL-EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC----------LDNALLIFSRMRE---KNVLTWTAMATG 294 (482)
Q Consensus 229 ~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~ 294 (482)
+.|.+ ++|..+.+.++... |.+..+|+.--..+...+. +++++.+++.+.. .+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44554 47889999998887 6677777766555544443 6788888888874 477888887777
Q ss_pred HHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc--
Q 011587 295 MAIHGK--GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA-- 369 (482)
Q Consensus 295 ~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 369 (482)
+.+.++ +++++.+++++.+.... |...|+.-...+...|. .+++.+.++.+.+. -+-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhh
Confidence 777774 89999999999987644 77777776666777787 58999999999984 345677777766666554
Q ss_pred ------------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhc-----------CCHhHHHHHHHHHHhcCCCcccc
Q 011587 370 ------------GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVH-----------GDVALGEKVGKILLQLQPEVTFV 424 (482)
Q Consensus 370 ------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~ 424 (482)
+.++++++.+.+. ...| |...|+-+-..+.+. +.++++.+.++++++..|
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p----- 269 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP----- 269 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT-----
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc-----
Confidence 4577888888877 3345 778887655555544 457899999999999999
Q ss_pred cccCCchhHHHHHH---HHHhCCCchHHHHHHHHhHhc
Q 011587 425 DVACTSEDFVALSN---IYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 425 ~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+..++..++. +....|..+++...+.++.+.
T Consensus 270 ---d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 270 ---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp ---TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45444444332 223467788888888888743
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=59.90 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC---CHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP---DAILWRSLL 395 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~ 395 (482)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 345555666677777777777777777763 2345666777777777777888887777766 3233 466777777
Q ss_pred HHHHhc-CCHhHHHHHHHHHHhcCC
Q 011587 396 SACNVH-GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 396 ~~~~~~-g~~~~a~~~~~~~~~~~~ 419 (482)
..+... |++++|.+.++++....|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 778888 888888888888877776
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.4e-05 Score=74.32 Aligned_cols=196 Identities=6% Similarity=-0.083 Sum_probs=139.8
Q ss_pred HHHHHcCCChHHHHHHHHhccCC-----C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC
Q 011587 261 VDMYSKCGCLDNALLIFSRMREK-----N---------------VLTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPN 319 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~ 319 (482)
...+.+.|++++|++.|.++.+. + ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999987631 0 125778899999999999999999987652 11122
Q ss_pred H----HHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-------CC
Q 011587 320 A----VTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PI 384 (482)
Q Consensus 320 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~ 384 (482)
. .+.+.+-..+...|+.+.|..++...... .+..+ -..++..+...|...|++++|..++++. .-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 12333334455678999999998887652 12222 2567888999999999999999988766 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 385 KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 385 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
++ ...++..++..|...|++++|...+++.....+....+. ..-...+..+...+...|++++|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT-QTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22 345788889999999999999999999887543210000 0013456677788889999999998776664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=5.4e-06 Score=79.78 Aligned_cols=119 Identities=6% Similarity=-0.030 Sum_probs=90.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCH
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDV 404 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 404 (482)
...+.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778888888888888873 3445778888888888889999998888877 4445 677888888889999999
Q ss_pred hHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH--HHhCCCchHHHHHHHH
Q 011587 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI--YASAERWPDVESVRKQ 455 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 455 (482)
++|.+.++++++..| .+...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKP--------HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHST--------TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999888 566677777666 8888999999988873
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-05 Score=59.16 Aligned_cols=94 Identities=9% Similarity=-0.019 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C-------HHH
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N-------VLT 287 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~ 287 (482)
..+..+...+...|+++.|...++++.+.. +.+...+..+...|...|++++|...+++..+ | + ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345555666666666666666666666655 44555666666666666666666666665542 1 1 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
+..+..++...|++++|...|++..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555566666666666666655553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=61.61 Aligned_cols=95 Identities=8% Similarity=-0.003 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC----CCC----HHHHHH
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI----KPD----AILWRS 393 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 393 (482)
+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...+++. .. .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444555555555555555442 1223444445555555555555555555444 11 111 445555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...+...|++++|...++++.+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 66666666666666666666666544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=75.63 Aligned_cols=158 Identities=9% Similarity=-0.025 Sum_probs=93.2
Q ss_pred ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 269 CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 269 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
++++|...|+...+ .....|..+...|.+.|++++|+..|++..+.. |+...+ . .+... +
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----H
Confidence 44455544443332 234567777777888888888888888776642 111000 0 00000 0
Q ss_pred hHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccc
Q 011587 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423 (482)
Q Consensus 346 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 423 (482)
... .....|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...|+++++..|
T Consensus 312 ~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P---- 382 (457)
T 1kt0_A 312 SES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP---- 382 (457)
T ss_dssp HHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred HHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----
Confidence 000 11346666777777777777777777766 3333 566677777777777777777777777777777
Q ss_pred ccccCCchhHHHHHHHHHhCCCchHHHH-HHHHh
Q 011587 424 VDVACTSEDFVALSNIYASAERWPDVES-VRKQM 456 (482)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m 456 (482)
.+...+..+..++.+.|+++++.+ +++.|
T Consensus 383 ----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 383 ----QNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776654 34444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.2e-05 Score=62.66 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=48.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCC-CHHH
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKW---GVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP-DAIL 390 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~ 390 (482)
+..+...+...|++++|...+++..+.. +..+ ....+..+...+...|++++|.+.+++. +..+ ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 3344444444455555555544443310 0000 1234445555555566666665555443 1111 1334
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
+..+...+...|++++|.+.+++..+..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666667777777777777777776643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-05 Score=63.04 Aligned_cols=136 Identities=13% Similarity=-0.000 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCC-CH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP-DA 388 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 388 (482)
.++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566667777778888888888777652111111 247788889999999999999988876 1111 14
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..+..+...+...|++++|...++++.+...+.+. ......++..+...+...|++++|...+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56777888899999999999999999876431100 002245677899999999999999999988764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-05 Score=57.77 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=59.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCH---HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHH
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHI---KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSA 397 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 397 (482)
+...+...|++++|...|+.+.+. .+.+. ..+..+..++...|++++|...|++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 445556667777777777776663 12222 45566666777777777777777665 22232 4556667777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCC
Q 011587 398 CNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...|++++|...|+++++..|
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 7777888888888888877776
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-05 Score=60.17 Aligned_cols=93 Identities=11% Similarity=0.087 Sum_probs=78.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHcC-CCCCC-H---HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC---ch
Q 011587 360 SCIVDLLGRAGHLEEAYNFIMGI-PIKPD-A---ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT---SE 431 (482)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~ 431 (482)
..+...+...|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..| .+ ..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~ 77 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP--------THDKAAG 77 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TSTTHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--------CCcccHH
Confidence 44567788999999999999987 32343 2 4777788899999999999999999999988 45 66
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 432 DFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+..+..++.+.|++++|...++++.+..
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78899999999999999999999988654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=59.98 Aligned_cols=95 Identities=11% Similarity=-0.026 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHh
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNV 400 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 400 (482)
+..+...+.+.|++++|...|++..+. -+.+...|..+..++...|++++|+..|++. .+.| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556667778888888888887773 3446677777777788888888888888776 4444 56677777777888
Q ss_pred cCCHhHHHHHHHHHHhcCC
Q 011587 401 HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 401 ~g~~~~a~~~~~~~~~~~~ 419 (482)
.|++++|...++++++..|
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 8888888888888877766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.99 E-value=4.5e-05 Score=73.31 Aligned_cols=118 Identities=11% Similarity=-0.009 Sum_probs=71.2
Q ss_pred HHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
+...+.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..+++..+... -+...+..+..+|.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 33455667777777777776653 3456677777777777777777777777766532 2456666677777777777
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDL--LGRAGHLEEAYNFIM 380 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 380 (482)
++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777776631 2222333334333 666667777776666
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.7e-05 Score=60.55 Aligned_cols=91 Identities=12% Similarity=-0.060 Sum_probs=70.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHcC-CCCCC-------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-------C
Q 011587 360 SCIVDLLGRAGHLEEAYNFIMGI-PIKPD-------------AILWRSLLSACNVHGDVALGEKVGKILLQL-------Q 418 (482)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 418 (482)
......+.+.|++++|+..|++. .+.|+ ...|..+..++.+.|++++|+..++++++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34444455555555555555544 22222 338888999999999999999999999999 8
Q ss_pred CCcccccccCCchhH----HHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 419 PEVTFVDVACTSEDF----VALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
| .+...| .....++...|++++|+..|++..+
T Consensus 95 p--------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 Q--------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp S--------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C--------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8 678888 9999999999999999999998763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.98 E-value=5.4e-05 Score=70.12 Aligned_cols=137 Identities=9% Similarity=-0.082 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
..+..+...+.+.|++++|+..|++..+.- +... .... .+...+ .-+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHHH
Confidence 456666677777777777777777665420 0000 0000 111111 112245688888899
Q ss_pred HhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 366 LGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
|.+.|++++|++.+++. .+.| +...|..+..+|...|++++|...|+++++..| .+...+..+..++.+.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--------~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--------EDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHH
Confidence 99999999999999887 5556 677888899999999999999999999999998 6788888888888888
Q ss_pred CCchHHHH
Q 011587 444 ERWPDVES 451 (482)
Q Consensus 444 g~~~~a~~ 451 (482)
++.+++.+
T Consensus 355 ~~~~~a~k 362 (370)
T 1ihg_A 355 KAQKDKEK 362 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=3e-05 Score=62.36 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------------CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG----------------VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI- 382 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 382 (482)
...+......+.+.|++++|...|.+..+... .+.+...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45667777888889999999999998887200 1223457777888888888888888888777
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.| +...|..+..++...|++++|...|+++++..|
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 3344 677888888888888888888888888888887
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.2e-05 Score=62.22 Aligned_cols=103 Identities=15% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDC--------GV---------KPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 347 (482)
...+......+.+.|++++|+..|++.... .. +-+...|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999998764 10 1134578888899999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH
Q 011587 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI 389 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 389 (482)
+. -+.+...|..+..+|...|++++|...|++. .+.|+..
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 83 3556889999999999999999999999987 5566543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.2e-05 Score=71.81 Aligned_cols=148 Identities=9% Similarity=-0.066 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 456777777888889999999999887764 344331 22233333332211 1 126677777
Q ss_pred HHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH-H
Q 011587 365 LLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY-A 441 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 441 (482)
+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...|+++++..| .+...+..+.... .
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--------~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP--------DDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHH
Confidence 888888888888888776 3334 667777788888888888888888888888777 5666666666553 3
Q ss_pred hCCCchHHHHHHHHhHhcC
Q 011587 442 SAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~~ 460 (482)
..+..+++...++.|....
T Consensus 311 ~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 4456667777777776443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.2e-05 Score=60.79 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=56.2
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWG--VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
.|++++|...|++..+. + -+.+...+..+...|...|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776662 2 2334556677777777777777777777766 3333 5666777777777788888888
Q ss_pred HHHHHHHhcCC
Q 011587 409 KVGKILLQLQP 419 (482)
Q Consensus 409 ~~~~~~~~~~~ 419 (482)
..++++++..|
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88888777766
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00088 Score=65.65 Aligned_cols=167 Identities=10% Similarity=0.013 Sum_probs=120.1
Q ss_pred HHHHHHHHhccC---CCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--c
Q 011587 271 DNALLIFSRMRE---KNVLTWTAMATGMAIHGK----------GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG--L 335 (482)
Q Consensus 271 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~ 335 (482)
++|++.++++.+ .+..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 455666665553 234455554444444444 77888888888776544 6666766666666777 6
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhc-----------
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-HLEEAYNFIMGI-PIKP-DAILWRSLLSACNVH----------- 401 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------- 401 (482)
++++...++++.+. -+-+...|+.-...+.+.| ..+++++.++++ ...| +...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888883 3446777777777777777 788888888887 4455 777787776666553
Q ss_pred ---CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchH
Q 011587 402 ---GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448 (482)
Q Consensus 402 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (482)
+.++++.+.+.+++...| .+...|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P--------~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP--------NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS--------SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCCccc
Confidence 567899999999999999 799999999999999888655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=60.79 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=70.4
Q ss_pred ccCCHHHHHHHHHcC-CC---CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 368 RAGHLEEAYNFIMGI-PI---KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
..|++++|+..|++. .. .| +...+..+..+|...|++++|...++++++..| .+...+..+..++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--------NHQALRVFYAMVLYN 73 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHH
Confidence 457888999999887 54 24 566788899999999999999999999999999 789999999999999
Q ss_pred CCCchHHHHHHHHhHhc
Q 011587 443 AERWPDVESVRKQMKVK 459 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~~~ 459 (482)
.|++++|...+++....
T Consensus 74 ~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00022 Score=68.15 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|+++.+. .+-+...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 35566666666666666666666666665432 24556666666666666666666666666652 2234445566666
Q ss_pred HHhccCCHHHHH-HHHHcC
Q 011587 365 LLGRAGHLEEAY-NFIMGI 382 (482)
Q Consensus 365 ~~~~~g~~~~A~-~~~~~~ 382 (482)
++.+.++.+++. ..+..|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 666666666553 334444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00019 Score=66.46 Aligned_cols=118 Identities=4% Similarity=-0.069 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC-------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE-------------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.+..+...+.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|+..+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 345566666677777777776665543 1335566666677777777777777777766532
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (482)
-+...+..+..+|...|++++|...|++..+. .+.+...+..+...+...++.+++.
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24556666666777777777777777776663 2234555555555555555555553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.8e-05 Score=68.55 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
....+..+...+.+.|++++|...|++..+ |+... +...++.+++...+. ...|..+..+|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 455678889999999999999999998764 33221 222333444333221 13677788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHH-HHhcCCHhHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSA-CNVHGDVALG 407 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~a 407 (482)
.+.|++++|...+++..+. .+.+...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988873 3446778888899999999999999999887 55664 3444444444 2345667778
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
...|+.+....|
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888887776
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.2e-05 Score=72.55 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=96.0
Q ss_pred HHhccCcHHHHHHHHHHhHHhcC--CCc----CHHHHHHHHHHHhccCCHHHHHHHHHcC---------CCCCC-HHHHH
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWG--VEP----HIKHYSCIVDLLGRAGHLEEAYNFIMGI---------PIKPD-AILWR 392 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 392 (482)
.+...|++++|+.++++..+... +.+ ...+++.|..+|...|++++|+.++++. ...|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34578999999998888776311 112 3568899999999999999998888765 23453 45789
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHh-----cCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQ-----LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.|...|...|++++|+.+++++++ .|++ -.....+...+..++...+.+++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-----Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-----HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 4551 00123344577788889999999999999998643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.8e-05 Score=58.82 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC---
Q 011587 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT--- 429 (482)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 429 (482)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++..| .+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS--------TAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--------STTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CccHH
Confidence 4556777788888888888888888877 3334 677788888888899999999999999998887 44
Q ss_pred ---chhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 430 ---SEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 430 ---~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
...+..+..++...|++++|...+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 55666777777777777666554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00017 Score=53.94 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=58.1
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
.|...|++..+ ..+.+...+..+...|...|++++|...|++. ...| +...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777766 23445677777888888888888888888776 3334 56677777778888888888888888887
Q ss_pred hcCC
Q 011587 416 QLQP 419 (482)
Q Consensus 416 ~~~~ 419 (482)
+..+
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00037 Score=54.83 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHH----HHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDC-----GVKPN-AVTF----TSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|+.+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555666666666666666666655542 11332 2344 4555555666666666666665554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00042 Score=48.95 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..| .+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------NNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCHHHH
Confidence 456677777788888888888888776 2233 567777888888888999999999999888888 677777
Q ss_pred HHHHHHHHhCC
Q 011587 434 VALSNIYASAE 444 (482)
Q Consensus 434 ~~l~~~~~~~g 444 (482)
..+..++.+.|
T Consensus 81 ~~l~~~~~~~g 91 (91)
T 1na3_A 81 QNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 77777766543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00046 Score=50.08 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+...+..+...|...|++++|...|+++++.+| .+...|..+..+|.+.|++++|...+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--------DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555555555555555 445555555555555555555555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00057 Score=65.40 Aligned_cols=88 Identities=10% Similarity=-0.070 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHHhhhccCC-C---Cc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-----CCCCCCchhHHHHHHH
Q 011587 193 KDCAFNALVLFRDMLVDVSG-V---KP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-----FYMPENDVFIGTALVD 262 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~-~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~~~li~ 262 (482)
+|++++|+.++++....... + .| ...+++.+..+|...|++++|+.+++++++. |..-+....+++.|..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56666666666554411111 1 11 1234555555555555555555555554431 1100112233444445
Q ss_pred HHHcCCChHHHHHHHHhc
Q 011587 263 MYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 263 ~~~~~g~~~~A~~~~~~~ 280 (482)
.|...|++++|+.++++.
T Consensus 402 ~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 555555555555444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0026 Score=62.29 Aligned_cols=170 Identities=11% Similarity=0.010 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC----------hHHHHHHHHhccC---CCHHHHHHHHHHHHh
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC----------LDNALLIFSRMRE---KNVLTWTAMATGMAI 297 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 297 (482)
...++|.+.++++.... |.+..+|+.--.++...|+ +++++++++.+.+ .+..+|+.-.-.+.+
T Consensus 43 ~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34467788899998887 7778888887777777777 8899999998874 466788887778888
Q ss_pred cC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc-----
Q 011587 298 HG--KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG-LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA----- 369 (482)
Q Consensus 298 ~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 369 (482)
.+ +++++++.++++.+.... +...|+.-...+.+.| ..+++.+.++++.+ .-+-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccc
Confidence 88 669999999999887654 7777777777777778 88899999999887 3345677777776666553
Q ss_pred ---------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhH
Q 011587 370 ---------GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVAL 406 (482)
Q Consensus 370 ---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 406 (482)
+.++++++.+++. .+.| +...|.-+-..+.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 4568888888776 4445 77788877777777666443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0026 Score=49.31 Aligned_cols=112 Identities=9% Similarity=-0.120 Sum_probs=64.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHH
Q 011587 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEE 374 (482)
Q Consensus 299 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 374 (482)
+++++|...|++..+.| .|... +-..|...+.+++|.+.|++..+. | +...+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35666666666666665 22322 555555556666666666666662 2 44555555555655 556666
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCC
Q 011587 375 AYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 375 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 419 (482)
|.++|++.--.-+...+..|...|.. .++.++|..+|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 66666655112355555556656655 5666666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0033 Score=48.70 Aligned_cols=106 Identities=6% Similarity=-0.066 Sum_probs=87.5
Q ss_pred CChHHHHHHHHhccCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHH
Q 011587 268 GCLDNALLIFSRMREK-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH----AGLVEEGLHL 342 (482)
Q Consensus 268 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~ 342 (482)
+++++|..+|++..+. +.... |...|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|..+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4789999999988753 44444 7777878888999999999998876 56777778888877 8999999999
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcC
Q 011587 343 FDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGI 382 (482)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 382 (482)
|++..+. | +...+..|...|.. .++.++|.++|++.
T Consensus 84 ~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 84 YSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 9999984 4 56677888888888 88999999999876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00021 Score=52.83 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444444444444444444444444432 11334444444444445555555555544443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0022 Score=46.40 Aligned_cols=63 Identities=11% Similarity=-0.032 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
+...+..+..++...|++++|...++++++.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566677777777777777777777777766 5566677777777777777777777776654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0031 Score=46.84 Aligned_cols=77 Identities=6% Similarity=-0.211 Sum_probs=45.3
Q ss_pred HHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 011587 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278 (482)
Q Consensus 199 a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (482)
|+..|++.. . ..+.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|+
T Consensus 4 a~~~~~~al--~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 4 ITERLEAML--A-QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHH--T-TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHH--H-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555543 1 112245566666666666666666666666666655 4455566666666666666666666666
Q ss_pred hcc
Q 011587 279 RMR 281 (482)
Q Consensus 279 ~~~ 281 (482)
+..
T Consensus 78 ~al 80 (115)
T 2kat_A 78 SGL 80 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0038 Score=43.75 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333334444444444444444443321 11233334444444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0039 Score=44.31 Aligned_cols=69 Identities=10% Similarity=-0.043 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCc
Q 011587 386 PDAILWRSLLSACNVHGD---VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 386 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 462 (482)
.+...+..+..++...++ .++|..+++++++.+| .+......+...+.+.|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456666666666654444 6788888888888888 67888888888888888888888888888766554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.001 Score=52.21 Aligned_cols=95 Identities=11% Similarity=-0.020 Sum_probs=58.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh----------HHHHHHHHhccC--C-CHHHHHHHHHHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL----------DNALLIFSRMRE--K-NVLTWTAMATGM 295 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~--~-~~~~~~~li~~~ 295 (482)
+.+.+++|.+.++...+.. |.+...|..+..++...+++ ++|+..|++..+ | +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3455667777777777766 66777777777777766654 366666666553 2 445666666666
Q ss_pred HhcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 296 AIHG-----------KGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 296 ~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
...| ++++|+..|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 6553 677777777776664 455555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0011 Score=52.02 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=57.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC----------HHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH----------LEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
+.+.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. .+.| +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 334556666666666652 23355566656666665554 34777777766 4455 4566777777776
Q ss_pred hc-----------CCHhHHHHHHHHHHhcCC
Q 011587 400 VH-----------GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 400 ~~-----------g~~~~a~~~~~~~~~~~~ 419 (482)
.. |++++|.+.|+++++.+|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 65 589999999999999998
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.36 Score=47.38 Aligned_cols=255 Identities=11% Similarity=0.016 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHH
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 223 (482)
...-+..+..+.+.+++.....++.. ...+...-.....+... .|+..+|....+.+- ..| ...+..+..+
T Consensus 72 ~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~-----~G~~~~a~~~~~~lW--~~~-~~~p~~c~~l 142 (618)
T 1qsa_A 72 RTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWN-----TGQSEEAWQGAKELW--LTG-KSQPNACDKL 142 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--SCS-SCCCTHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHH--hCC-CCCcHHHHHH
Confidence 34445666777788888888887776 32244444445556666 677666666666654 222 2334455555
Q ss_pred HHHhhccCchHH--HHHHHHHHHHhCC----------CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH---HH
Q 011587 224 LSVSSQLGLLEF--GACVHGYMEKTFY----------MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL---TW 288 (482)
Q Consensus 224 ~~~~~~~~~~~~--a~~~~~~~~~~~~----------~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 288 (482)
+..+.+.|.+.. ...=++.+...|. .|+........++..+.. ...+....... .++.. .+
T Consensus 143 ~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~ 218 (618)
T 1qsa_A 143 FSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMA 218 (618)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHH
Confidence 555554443321 1111122222210 000011111112211111 11122222211 11111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT----FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..-+.-+.+ .+.+.|...|........ .+... ...+.......+...++...+...... ..+.....-.+.
T Consensus 219 ~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r 293 (618)
T 1qsa_A 219 AVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVR 293 (618)
T ss_dssp HHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHH
T ss_pred HHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHH
Confidence 112222333 366778887777754321 22222 222222333444345566666654442 233333333444
Q ss_pred HHhccCCHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 365 LLGRAGHLEEAYNFIMGIPIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
...+.|+++.|.+.|+.|.-.+ ...-.--+..++...|+.++|..+|+.+.+
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4456688888888888874332 122222244566677888888888887754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.092 Score=39.24 Aligned_cols=141 Identities=11% Similarity=0.111 Sum_probs=98.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
+.-.|..++..++..+..... +..-||.+|.-....-+-+-..++++..-+-+. ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHH
Confidence 345677777777777776542 555666666666666666666666666655221 135667777
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHH
Q 011587 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 375 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
....+-.++ .+...++..+..+..+|+-+.-.+++..+....+ |++.....+..+|.+.|+..+|.+++.
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~--------~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNE--------VSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC--------SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCC--------CChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 777776665 3445566677788888888888888888766666 788888888899999999999999988
Q ss_pred HhHhcCCc
Q 011587 455 QMKVKRVE 462 (482)
Q Consensus 455 ~m~~~~~~ 462 (482)
+.-++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 88888874
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.13 Score=46.40 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=56.8
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.+..+|..+...+...|++++|...+++. .+.|+...|..+...+.-.|+.++|.+.++++.+.+|
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3567778888877777789999999999888 4458888887788888889999999999999999987
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=60.30 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=65.6
Q ss_pred ccCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----cCCCcccccccCCchh
Q 011587 368 RAGHLEEAYNFIMGI---------PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQ-----LQPEVTFVDVACTSED 432 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~ 432 (482)
..|++++|+.++++. .-.|+ ..+++.|..+|...|++++|+.+++++++ .|++ -.....+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-----Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-----SLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-----CHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-----ChHHHHH
Confidence 457888888887654 22333 46789999999999999999999999886 3441 0123457
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 433 FVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
++.|...|..+|++++|+.++++..
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8899999999999999999998765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0056 Score=57.51 Aligned_cols=85 Identities=19% Similarity=0.081 Sum_probs=65.9
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCCc----CHHHHHHHHHHHhccCCHHHHHHHHHcC---------CCCCC-HHHHHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKW--GVEP----HIKHYSCIVDLLGRAGHLEEAYNFIMGI---------PIKPD-AILWRSLL 395 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 395 (482)
+.|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++. ...|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888876531 1222 2568889999999999999998888766 23453 45789999
Q ss_pred HHHHhcCCHhHHHHHHHHHHh
Q 011587 396 SACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~ 416 (482)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999876
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0051 Score=57.86 Aligned_cols=90 Identities=9% Similarity=0.069 Sum_probs=69.2
Q ss_pred HHHHhccCCHHHHHHHHHcC------CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-----CCCccccccc
Q 011587 363 VDLLGRAGHLEEAYNFIMGI------PIKP----DAILWRSLLSACNVHGDVALGEKVGKILLQL-----QPEVTFVDVA 427 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~------~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 427 (482)
+..+.+.|++++|+.++++. -+.| ...+++.+..+|...|++++|+.+++++++. |++ -.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-----Hp 368 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-----HP 368 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-----CH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-----Ch
Confidence 45566788999999888755 1223 2457899999999999999999999998863 331 01
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 428 CTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
....+++.|...|...|++++|+.++++..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 234567889999999999999999988765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0084 Score=42.89 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCch-hHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE-DFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
....+...|++++|...++++++..| .+.. .+..+..+|.+.|++++|...+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--------VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--------STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34556778889999999999888888 6777 88888888888899999998888887654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.013 Score=55.13 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=68.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhc--CCCc----CHHHHHHHHHHHhccCCHHHHHHHHHcC---------CCCCC-HHH
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKW--GVEP----HIKHYSCIVDLLGRAGHLEEAYNFIMGI---------PIKPD-AIL 390 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 390 (482)
+..+.+.|++++|+.++++..+.. -+.| ...+++.+..+|...|++++|+.++++. ...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567788899999888887521 1122 2567888899999999999998888765 33443 457
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999876
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.021 Score=40.66 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=43.1
Q ss_pred HHHHHhccCCHHHHHHHHHcC-CCCC-CHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 362 IVDLLGRAGHLEEAYNFIMGI-PIKP-DAI-LWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
....+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|...|+++++..|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345566778888888888776 3334 456 777777788888888888888888888887
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.036 Score=57.02 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
...|..+.+.+.+.|+++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345555555555555555555555554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0015 Score=60.44 Aligned_cols=233 Identities=11% Similarity=-0.020 Sum_probs=139.2
Q ss_pred CchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHH
Q 011587 39 PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALG 114 (482)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~ 114 (482)
.+.+++.|..+.-.. +...+|...|=+.. |+..|..+|.+ |.+++-+..+...++..- ++..=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~---~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k---e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQK---GMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTS---SSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC---STTTTHHHHH
T ss_pred CccHHHHHHHHHHcc---CchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---ccccHHHHHH
Confidence 345566666666666 66666665554333 34445555555 788887777776666533 3345567888
Q ss_pred HhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC-----------------------
Q 011587 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP----------------------- 171 (482)
Q Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------- 171 (482)
+|++.+ + +.+-++++. .||..-...+.+-|...|.++.|.-+|..+.
T Consensus 125 ayAk~~-r--L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 125 ALAKTN-R--LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHTSC-S--SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHhhC-c--HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887 6 555554432 4666666677888888888888888887664
Q ss_pred -CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCC
Q 011587 172 -MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250 (482)
Q Consensus 172 -~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 250 (482)
..++.||-.+-.+|.. .+.+.-|.-.--.+. ....-...++..|...|.+++...+++.-+...
T Consensus 195 KAns~ktWKeV~~ACvd-----~~EfrLAqicGLniI-------vhadeL~elv~~YE~~G~f~ELIsLlEaglglE--- 259 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVD-----GKEFRLAQMCGLHIV-------VHADELEELINYYQDRGYFEELITMLEAALGLE--- 259 (624)
T ss_dssp TCCSSCSHHHHTHHHHH-----SCTTTTTTHHHHHHH-------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST---
T ss_pred hcCChhHHHHHHHHHhC-----chHHHHHHHhcchhc-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 1267788888888888 555554443332222 111122234555667777777777666655322
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----------CCHHHHHHHHHHHHhcCChHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----------KNVLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~ 305 (482)
......|+-|.-.|++- +.++..+.++-.-. .....|.-++-.|+.-.+++.|.
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33555666666666654 44444444443321 13445677777777767666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.11 Score=46.89 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWR 392 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 392 (482)
.+..+|..+...+...|++++|...++++... + |+...|..+...+.-.|++++|.+.+++. .+.|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 34555555544444556666666666666663 2 55555555556666666666666666555 4455555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0004 Score=64.11 Aligned_cols=238 Identities=9% Similarity=0.016 Sum_probs=172.2
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHH
Q 011587 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222 (482)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 222 (482)
.+.+|..|..+..+.+++.+|.+.|-+ ..|+..|..+|.+..+ .|.+++-+..+...+ +..-.|. .=+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~-----~~~~edLv~yL~MaR--k~~ke~~--IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANT-----SGNWEELVKYLQMAR--KKARESY--VETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTT-----SSCCTTHHHHHHTTS--TTCCSTT--TTHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHh-----CCCHHHHHHHHHHHH--HHhcccc--cHHH
Confidence 456788899999999999999888744 4477788889999999 899999999888776 4444443 3357
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--------------------
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-------------------- 282 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------- 282 (482)
|+-+|++.++..+.++++. .++..-...+.+-|...|.++.|.-+|..+..
T Consensus 122 Li~ayAk~~rL~elEefl~---------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHTSCSSSTTTSTTS---------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHhhCcHHHHHHHHc---------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 8889999998877655442 44665667888889999999999888887652
Q ss_pred ----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHH
Q 011587 283 ----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358 (482)
Q Consensus 283 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 358 (482)
.++.||-.+-.+|...+.+.-|.-+--.++-. |+ ....++..|-..|-+++-+.+++.-.. .-....-+
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGm 265 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGM 265 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHH
Confidence 36679999999999999888776665554422 11 122466678888999998888887763 22456778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC----CCCC------CHHHHHHHHHHHHhcCCHhHHH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI----PIKP------DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p------~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
|+.|.-.|++- ++++..+.++-. +++. ....|.-++-.|.+-.+++.|.
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88888888885 566665555443 3322 2345777777888777777654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.28 Score=39.02 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=90.3
Q ss_pred HHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 340 (482)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+..+ |..+.-.|.-.|+.++..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788899998887776 4677899999999999999999999988653 334444555667877766
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
++-+....+ | -++.-...+.-.|+++++.++|.+.+.-|.... .....|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 665555543 2 234445666778999999999988874332222 123367777888887755
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.25 Score=39.30 Aligned_cols=130 Identities=9% Similarity=0.013 Sum_probs=87.0
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhcc
Q 011587 151 IHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230 (482)
Q Consensus 151 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~ 230 (482)
.......|+++.|.++.+.+ .+...|..|...... .|+++-|.+.|.... -+..+.-.|...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~-----~gn~~lAe~cy~~~~-----------D~~~L~~Ly~~t 73 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALA-----QGNASLAEMIYQTQH-----------SFDKLSFLYLVT 73 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHH-----TTCHHHHHHHHHHTT-----------CHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHH-----cCChHHHHHHHHHhC-----------CHHHHHHHHHHh
Confidence 34556788888888887766 367789999999888 899999999999876 244555556667
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
|+.++..++-+.....|- ++.....+.-.|+++++.++|.+......... .....|-.+.|.++.+.
T Consensus 74 g~~e~L~kla~iA~~~g~--------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTRED--------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQ 140 (177)
T ss_dssp TCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcc--------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHH
Confidence 777777666666655552 23444556667888888888877665322111 11224556667777665
Q ss_pred H
Q 011587 311 M 311 (482)
Q Consensus 311 m 311 (482)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.22 Score=51.12 Aligned_cols=104 Identities=11% Similarity=0.058 Sum_probs=68.1
Q ss_pred HHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC
Q 011587 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~ 231 (482)
......|+++.|.++.+.+. +...|..+...+.+ .++++.|.++|.++. -|..+...+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~-----~~~~~~A~~~y~~~~-----------d~~~l~~l~~~~~ 721 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQ-----RFNFKLAIEAFTNAH-----------DLESLFLLHSSFN 721 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHT-----------CHHHHHHHHHHTT
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHH-----cCCHHHHHHHHHHcc-----------ChhhhHHHHHHcC
Confidence 34456688888888877664 56778888888888 888888888888775 1344555555567
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
+.+...++-+.....|. ++....+|.+.|++++|++++.++.
T Consensus 722 ~~~~~~~~~~~a~~~~~--------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGK--------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCc--------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 77766666655555542 1334445666777777776655443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.054 Score=38.25 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=49.8
Q ss_pred CcCHHHHHHHHHHHhccCC---HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 353 EPHIKHYSCIVDLLGRAGH---LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+.+...+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|...|+++++..|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566677777777754443 68888888877 4445 566777777788888889999998888888887
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.073 Score=46.12 Aligned_cols=87 Identities=9% Similarity=0.141 Sum_probs=59.6
Q ss_pred HHHHHHHHcC-CCCCC---HHHHHHHHHHHHh-----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 373 EEAYNFIMGI-PIKPD---AILWRSLLSACNV-----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
..|...+++. .+.|+ -..|..+...|.+ -|+.++|.+.|+++++.+|. -+..++..+.+.+++.
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-------~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-------HDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-------TCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-------CCchHHHHHHHHHHHh
Confidence 4455555555 44555 4567777777776 37888888888888888772 2477777788877774
Q ss_pred -CCchHHHHHHHHhHhcCCccCCc
Q 011587 444 -ERWPDVESVRKQMKVKRVETEPG 466 (482)
Q Consensus 444 -g~~~~a~~~~~~m~~~~~~~~~~ 466 (482)
|+.+++.+.+++........+|+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCC
Confidence 77888888888877666664444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.087 Score=38.06 Aligned_cols=72 Identities=13% Similarity=-0.129 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
+...+..+...+...|+++.|..+++.+++...+.... -.+....+..|..++.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999998853210000 0145678899999999999999999999988753
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.12 Score=37.28 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-----C----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-----P----IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+..+...+.+.|+++.|...|+.. . -.+....+..+..++.+.|+++.|...++++.+..|
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 344455566666666666666665544 0 123456677788888888888888888888888877
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.14 Score=39.63 Aligned_cols=83 Identities=14% Similarity=-0.008 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC---CHHHHHHHHHcC-CCC-C--CHHHHHHHHHHHHhcCCHhHH
Q 011587 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG---HLEEAYNFIMGI-PIK-P--DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a 407 (482)
....+++.|.+..+. + +++..+...+..++++.+ +.+++..+|++. ... | ....+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344556666655552 3 356677777777777766 455777777666 212 4 233444466677888899999
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
.+.++.+++..|
T Consensus 91 ~~y~~~lL~ieP 102 (152)
T 1pc2_A 91 LKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCC
Confidence 999998888888
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.85 Score=34.18 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 353 (482)
-.+.-+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-++ |++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 344555666677777777777777533 24566666677777777777777777777777774 654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.13 Score=39.93 Aligned_cols=82 Identities=9% Similarity=-0.130 Sum_probs=63.2
Q ss_pred HHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhcC-CCcccccccCCchhHHHHHHHHHhCCC
Q 011587 372 LEEAYNFIMGI--PIKPDAILWRSLLSACNVHG---DVALGEKVGKILLQLQ-PEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 372 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
...+.+.|.+. .-.++..+.-.+..++++.+ +++++..++++..+.. |+ .+...+..|.-+|.+.|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-------~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-------EQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-------chHHHHHHHHHHHHHccC
Confidence 34455555544 22468888888888999988 7779999999999988 31 246777889999999999
Q ss_pred chHHHHHHHHhHhcC
Q 011587 446 WPDVESVRKQMKVKR 460 (482)
Q Consensus 446 ~~~a~~~~~~m~~~~ 460 (482)
+++|.+.++.+.+..
T Consensus 87 Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 87 YEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.19 Score=43.52 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhHHhcCCCcC---HHHHHHHHHHHhc-----cCCHHHHHHHHHcC-CCCC--CHHHHHHHHHHHHhc-CC
Q 011587 336 VEEGLHLFDNMKSKWGVEPH---IKHYSCIVDLLGR-----AGHLEEAYNFIMGI-PIKP--DAILWRSLLSACNVH-GD 403 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~-g~ 403 (482)
...|...+++..+- .|+ ...|..+...|.+ -|+.++|.+.|++. .+.| +..++..+...++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45566666666652 454 4567777777777 37888888888877 5555 256666667777664 88
Q ss_pred HhHHHHHHHHHHhcCC
Q 011587 404 VALGEKVGKILLQLQP 419 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~ 419 (482)
.+++.+.++++++..+
T Consensus 256 ~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 256 RAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHcCCC
Confidence 8888888888888777
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.43 Score=36.56 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 369 AGHLEEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 369 ~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+++++|.++|+.+ .-+- ...|-.....-.++|+++.|.+++.+++..++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 36777777777666 2122 66676666667788888888888888888887
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.56 Score=46.99 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=50.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
...|...|+++.|+++.+++...-| .+-.+|..|+.+|.+.|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aP--------seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELAL--------DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS--------SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3446778999999999999999999 789999999999999999999999999885
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.16 E-value=4.2 Score=35.80 Aligned_cols=192 Identities=10% Similarity=0.031 Sum_probs=117.9
Q ss_pred hhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH--
Q 011587 125 LWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-- 201 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~-- 201 (482)
+++.++-++.-++.|--- -...|.++..-|.+.+++++|.+++.. -...+.+ .|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~-----~~Q~~sa~DLa 76 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLK-----AKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHH-----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHH-----CCCcchHHHHH
Confidence 555555555555555211 245677888888999999999998744 2233445 555554444
Q ss_pred --HHHHhhhccCCCCcCHHHHHHHHHHhhccC-----chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 011587 202 --LFRDMLVDVSGVKPTDTTMVCVLSVSSQLG-----LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274 (482)
Q Consensus 202 --~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~ 274 (482)
+.+... +.+++++......++..+.... +..-..+...+..+.|-.|..++..+..+...|.+.|++.+|+
T Consensus 77 ~llvev~~--~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~ 154 (312)
T 2wpv_A 77 FYLLEVYD--LAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAE 154 (312)
T ss_dssp HHHHHHHH--HTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH--HcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 344444 6688888888888887776543 2233344455555555434568888999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 275 LIFSRMREKNVLTWTAMATGMAIH---GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 275 ~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
..|---...+...+..++.-+... |...++ +...-..++. |.-.++...|..+++...++
T Consensus 155 ~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 155 RYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 988733333455555555443333 333322 2222223333 33458888888888877653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.25 Score=45.63 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH-----hcCCccCC
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK-----VKRVETEP 465 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 465 (482)
...++..+...|+.+++...++.+....| -+...+..++.++.+.|+..+|.+.|+.+. +.|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP--------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34566777889999999999999999999 788899999999999999999999988875 45888877
Q ss_pred cc
Q 011587 466 GS 467 (482)
Q Consensus 466 ~~ 467 (482)
.+
T Consensus 246 ~l 247 (388)
T 2ff4_A 246 TL 247 (388)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.71 E-value=1.8 Score=32.20 Aligned_cols=86 Identities=14% Similarity=-0.035 Sum_probs=57.1
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH---HHHHHHcC-CCC-C--CHHHHHHHHHHHHhcCCH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE---AYNFIMGI-PIK-P--DAILWRSLLSACNVHGDV 404 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~ 404 (482)
.......+.+-|...... |. ++..+-..+..++.+...... ++.++++. ... | .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455566666666552 33 667777777777877776655 67777766 222 3 222333455678889999
Q ss_pred hHHHHHHHHHHhcCC
Q 011587 405 ALGEKVGKILLQLQP 419 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~ 419 (482)
++|.+.++.+++..|
T Consensus 91 ~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 91 EKALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999888
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.71 E-value=5.1 Score=35.57 Aligned_cols=191 Identities=8% Similarity=-0.019 Sum_probs=114.1
Q ss_pred hhhHHHHHHHHHHhCCC---C-chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHH
Q 011587 125 LWLGRQIHVHVTKRGFM---F-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~ 200 (482)
+++..+=++.-++.|-- - -...|.++..-|.+.+++++|.+++-. -...+.+ .|+...+.
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~-----~~Q~~sg~ 75 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLR-----SGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHH-----TTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHH-----CCCcchHH
Confidence 45555555555555521 1 134677788888999999999998743 1223444 44444433
Q ss_pred HH----HHHhhhccCCCCcCHHHHHHHHHHhhccCch-----HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH
Q 011587 201 VL----FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL-----EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271 (482)
Q Consensus 201 ~~----~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 271 (482)
++ ++-.. +.++++|......++..+.....- .-..+...+-.+.|-.|..++.....+...|.+.+++.
T Consensus 76 DL~~llvevy~--~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 76 DLAVLLVDTFR--QAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHH--HHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 33 34444 567888888888888777665532 22233344444555444678888899999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 272 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
+|+..|---..+....+..++.-+...+... .++...-..++. |.-.++...|..+++...+
T Consensus 154 ~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 154 AAEKHLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 9999885322333356655544433333211 122333334444 3345788888877766665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.68 E-value=10 Score=38.97 Aligned_cols=119 Identities=11% Similarity=0.030 Sum_probs=59.9
Q ss_pred HHHHHHcCCChHHHHHHHHhccC-CCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhcc
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMA--TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT---SLFAACCHA 333 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~ 333 (482)
|...+.-.|+-+....++..+.+ .+..+...+. -++...|+.+.+..+++.+.... .|. .-|. ++.-+|+..
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGT 573 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTS
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCC
Confidence 34445566666666666655432 2222222232 33445677777777777766531 222 2222 233456677
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
|+.....+++..+.+ ....+..-...+.-++...|+.+.+.++++.+
T Consensus 574 Gn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 574 GNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp CCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred CCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 776666667777766 22223333333333444455555555555433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.19 E-value=0.47 Score=36.33 Aligned_cols=54 Identities=2% Similarity=-0.141 Sum_probs=44.3
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
..+|.++|.++|+.++.... .=...|...+..-.++|+...|.+++......+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hK--------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCK--------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCT--------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 44899999999999988744 2267777888888999999999999998775543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.53 E-value=1.1 Score=33.39 Aligned_cols=85 Identities=6% Similarity=-0.188 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 370 GHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVAL---GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 370 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
.....+.+-|.+. .-.|+..+--.+..++.+..+... +..+++...+.+.. .........|.-++.+.|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p------~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK------EEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHHhh
Confidence 3444455555444 114777777778888888876666 88899988887630 024566678889999999
Q ss_pred CchHHHHHHHHhHhcC
Q 011587 445 RWPDVESVRKQMKVKR 460 (482)
Q Consensus 445 ~~~~a~~~~~~m~~~~ 460 (482)
++++|.+.++.+.+..
T Consensus 89 ~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTE 104 (126)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999987544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.22 E-value=3.5 Score=28.83 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
...++|..|-+.+...+ . ...+-.+-+..+...|+|++|..+.+...-||...|-+|-. .+.|..+++..-+.+
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 35677888888887776 3 44444444556778899999999999999999999877765 477888888888878
Q ss_pred HHhCCCCCCHHHH
Q 011587 311 MRDCGVKPNAVTF 323 (482)
Q Consensus 311 m~~~g~~p~~~~~ 323 (482)
+...| .|....|
T Consensus 94 la~sg-~p~~q~F 105 (115)
T 2uwj_G 94 LGGSS-DPALADF 105 (115)
T ss_dssp HHTCS-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 87776 4444444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.93 E-value=7.7 Score=41.49 Aligned_cols=163 Identities=10% Similarity=-0.014 Sum_probs=85.8
Q ss_pred HHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 148 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
..++..+.+.+..+-+.++..-.+. +...--.+..++.. .|++++|...|++. ..|+..+....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~-----~ge~~~A~~~F~ka---a~~~~~~~~l~------- 879 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLK-----SKEAVKAVRCFKTT---SLVLYSHTSQF------- 879 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHH-----TTCHHHHHHHHHTC---CCSCTTCCCSC-------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHh-----cCCHHHHHHHHHHH---hhhhcccchhh-------
Confidence 3455666777888877776655544 33333345567778 99999999999887 44443321100
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CC----HHHHHHHHHHHHhcC
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KN----VLTWTAMATGMAIHG 299 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~~ 299 (482)
..... +..+.........-..-|..++..+.+.|.++.+.++-....+ .+ ...|..+.+++...|
T Consensus 880 ---~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 880 ---AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp ---SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC
Confidence 00000 1111111110011223455566666666666666555443321 11 124666677777777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
++++|...+-.+..... -...+..|+..+|..+.
T Consensus 953 ~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 953 KFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCC
Confidence 77777777766655432 23444555555554443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.89 E-value=6.5 Score=42.05 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccCC--------------------------CHHHHHHHHHHHHhcCChHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREK--------------------------NVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
+......+..+|...|++++|...|.+.... -..-|..++..+-+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455677788888888888888776420 01235667777777788887777
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 011587 307 LLDSMRDCGVKPN----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 307 ~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 375 (482)
+-....+....-+ ...|..+++++...|++++|...+-.+... .. -......|+...+..|..+.-
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH--HHHHHHHHHHHHHhCCChhhh
Confidence 7666554321111 124667777888888888887777766552 22 345666777767666655544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.82 E-value=3.8 Score=28.69 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=63.9
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
...++|..|-+.+...+ . ...+-.+-+..+...|+|++|..+.+...-||...|-+|-. .+.|..+++..-+.+
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45678888888887776 3 44444444556778899999999999999999999977765 467888888888878
Q ss_pred HHhCCCCCCHHHHH
Q 011587 311 MRDCGVKPNAVTFT 324 (482)
Q Consensus 311 m~~~g~~p~~~~~~ 324 (482)
+...| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 87776 44444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.97 E-value=2 Score=30.23 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++|+-++.+.|.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 445666667777777778888888888888888888888888888887753333 345655554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.75 E-value=1.7 Score=43.60 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=79.6
Q ss_pred HHHHHHHHhCCC-hhHHHHHhccCCCCCc--hh--HHHHHHHHhcCCcccccchHHHHHHHHHhhhc----cCCCCc-C-
Q 011587 148 TTLIHFYASNKD-ISSGKKVFDQMPMRSS--AT--WNAMINGYCSQSKKAKDCAFNALVLFRDMLVD----VSGVKP-T- 216 (482)
Q Consensus 148 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~p-~- 216 (482)
..++..+...++ ++.|..+|+++...++ .+ ...++..+... ...--+|++++.+.... .....+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~----~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHI----ETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 445555555666 4778888887764332 21 22333333331 12233445444443200 001111 1
Q ss_pred ---------HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 217 ---------DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 217 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
......-...|...|+++.|.++-++..... |.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122233455677899999999999998887 7789999999999999999999999999886
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.52 E-value=5.3 Score=30.27 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=45.6
Q ss_pred CcCHHHHHHHHHHHhccCCHH---HHHHHHHcC-CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 353 EPHIKHYSCIVDLLGRAGHLE---EAYNFIMGI-PIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|+..+--.+..++.+..+.+ +++.++++. ...| .....-.|.-++.+.|++++|.+..+.+++..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 567777777777777776544 566677666 2233 223333455678888888888888888888888
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.44 E-value=17 Score=33.24 Aligned_cols=166 Identities=10% Similarity=-0.025 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCC-CC-CCchhHHHHHHHHHHcCC-ChHHHHHHHHhccC---CCHHHH--
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY-MP-ENDVFIGTALVDMYSKCG-CLDNALLIFSRMRE---KNVLTW-- 288 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~-- 288 (482)
......+...|.+.|+.++..+++......-. .| .........+++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888776643211 00 113344567777776644 33333444433332 111222
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCcCHHH
Q 011587 289 ----TAMATGMAIHGKGNEAIRLLDSMRDCGVKPN-----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKW-GVEPHIKH 358 (482)
Q Consensus 289 ----~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 358 (482)
..++..|...|++.+|..++.++.+.=-..| ...|..-+..|...++..++...+....+.. .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2567788888888888888888765311112 2234555666778888888888888776531 12233332
Q ss_pred HHHH----HHHHh-ccCCHHHHHHHHHcC
Q 011587 359 YSCI----VDLLG-RAGHLEEAYNFIMGI 382 (482)
Q Consensus 359 ~~~l----i~~~~-~~g~~~~A~~~~~~~ 382 (482)
...+ ...+. ..+++.+|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2221 22344 678888887777653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.10 E-value=2 Score=39.52 Aligned_cols=53 Identities=6% Similarity=-0.056 Sum_probs=26.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
++.++...|+++++...+..+.. ..+.+...+..+|.++.+.|+..+|++.|+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~ 229 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYR 229 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444445555555555555544 223344455555555555555555554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.97 E-value=20 Score=33.53 Aligned_cols=187 Identities=10% Similarity=0.049 Sum_probs=116.6
Q ss_pred ccchHHHHHHHHHhhhc---cCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHH----HH
Q 011587 193 KDCAFNALVLFRDMLVD---VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM----YS 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~---~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~----~~ 265 (482)
.++++.|++.+..+..+ ......+......++..|...++++...+.+..+.+... . .......+++. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~--q-lk~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG--Q-LKLSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT--T-SHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh--h-hHHHHHHHHHHHHHHHh
Confidence 67889998888766521 123444567788899999999999988877766654321 1 22222333332 22
Q ss_pred cCCC--hHHHHHHHHhccC---C-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCC---HHHHHHHHH
Q 011587 266 KCGC--LDNALLIFSRMRE---K-------NVLTWTAMATGMAIHGKGNEAIRLLDSMRD--CGVKPN---AVTFTSLFA 328 (482)
Q Consensus 266 ~~g~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~ll~ 328 (482)
.... .+.-..+.+.... . .......|...|...|++.+|..++..+.. .|.... ...+...+.
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2332 2223333333322 1 112345677888899999999999998854 232222 245666777
Q ss_pred HHhccCcHHHHHHHHHHhHHh-cCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 329 ACCHAGLVEEGLHLFDNMKSK-WGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.|...+++.+|..++.++... +...+. ...+...+..+...+++.+|.+.|.+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 888899999999999887532 111222 235566677777888888888877665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.95 E-value=30 Score=35.61 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=82.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-CCHH-HHH---HHHHHHHhcCChHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVL-TWT---AMATGMAIHGKGNE 303 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~~~~~~ 303 (482)
-.|+.+....++..+.+.. ..+..-..++.-++.-.|+.+.+..+.+.+.. .+.. -|. ++..+|+-.|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3344444444444444321 22222223333344466777777777666653 2322 232 23445677788777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH-HHHHHHHHcC
Q 011587 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL-EEAYNFIMGI 382 (482)
Q Consensus 304 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 382 (482)
..++++.+.... ..+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .++.+++..+
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 777888877652 22333332233344445666666777766665 2345555444444444444443 4566666666
Q ss_pred CCCCCHHHHHHHHHH
Q 011587 383 PIKPDAILWRSLLSA 397 (482)
Q Consensus 383 ~~~p~~~~~~~l~~~ 397 (482)
.-.+|..+-..-+.+
T Consensus 656 ~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 656 TKDPVDFVRQAAMIA 670 (963)
T ss_dssp HTCSSHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH
Confidence 334454444333333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.74 E-value=5.1 Score=28.20 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=38.8
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 376 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
+.-+-.+.+-|++....+.+++|.+..|+..|.++++-+..+-. +...+|..++.
T Consensus 33 lN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--------~~~~iY~~~lq 87 (109)
T 1v54_E 33 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--------PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------TCTTHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--------CchhhHHHHHH
Confidence 33333446778888888888888888888888888888776655 34455665553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.66 E-value=3.9 Score=31.98 Aligned_cols=125 Identities=12% Similarity=0.031 Sum_probs=63.4
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCH-------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011587 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNV-------LTWTAMATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 245 ~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~ 312 (482)
..|..|......+..-+..+...|.++.|+-+.+.+.. +++ .++..+..++...+++..|...|++..
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34555545555556667777788888888877776542 221 255666777788888888888888764
Q ss_pred hCC-CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCC
Q 011587 313 DCG-VKPNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383 (482)
Q Consensus 313 ~~g-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 383 (482)
+.. .-+.. .+...+ ........ . .....+...---+..+|.+.+++++|+.+++.++
T Consensus 91 q~~k~l~k~~s~~~~~----~~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 91 QQKKALSKTSKVRPST----GNSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCccccc----cccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 321 11111 111101 00000000 0 0122233444446778888888999988888874
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.07 E-value=4.4 Score=30.24 Aligned_cols=63 Identities=16% Similarity=0.342 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
+.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+-.+.+.| +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666677777777888888888888888888888888888888887533 33445666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.62 E-value=4 Score=30.52 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=41.9
Q ss_pred CcCHHHHHHHHHHHhccCCH---HHHHHHHHcC-CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 353 EPHIKHYSCIVDLLGRAGHL---EEAYNFIMGI-PIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|+..+--.+..++.+..+. .+++.++++. ...| ....+-.|.-++.+.|++++|.+..+.+++..|
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 45556655666666666544 3456666665 2234 233444555677778888888888888887777
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.48 E-value=9.6 Score=29.77 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=67.1
Q ss_pred cCCCCcCHH--HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc-------hhHHHHHHHHHHcCCChHHHHHHHHhc
Q 011587 210 VSGVKPTDT--TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND-------VFIGTALVDMYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 210 ~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~ 280 (482)
..|+.|... ++..-+..+...+.++.|+-+.+.+....-. +++ ..++..+.+++...|++..|...|++.
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345666443 4556677788889999998888876554310 112 236677889999999999999999886
Q ss_pred cC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 281 RE------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 281 ~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.+ .+..+...+- ....... .....++...--.+..+|.+.+++++|+.+++.+..
T Consensus 90 Lq~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 42 1111111110 0000000 011122333333466777888888888888877654
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=81.72 E-value=11 Score=29.05 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=52.8
Q ss_pred CCChhhHHHHhcC-CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh
Q 011587 71 PPNLFLFNTLIRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145 (482)
Q Consensus 71 ~~~~~~~~~ll~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (482)
+.|..-....|.. ...+++.++|..|...|+--.-+.-|......+...| + +.+|.++++.-++.+-.|-..
T Consensus 65 knD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g-~--~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQG-E--LQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp TTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHcCCccHHH
Confidence 5566655555555 5566689999999888876545666777777777777 7 999999999988887777443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.83 E-value=29 Score=30.51 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR----LLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
..|.++..=|.+.+++++|++++..- ...+.+.|+...|.+ +++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34566677777888888888875432 223455666555544 455556678888888888888776
Q ss_pred hccCcHH-HHHHHHHHhHH---hcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-----------------C---C
Q 011587 331 CHAGLVE-EGLHLFDNMKS---KWG--VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-----------------P---I 384 (482)
Q Consensus 331 ~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----------------~---~ 384 (482)
.....-+ .=.++++++.+ +.| -.-++.....+...|.+.|++.+|...|-.- . -
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5532111 11223333322 012 1235677788888899999999987755311 0 1
Q ss_pred CC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 011587 385 KP---DAILWRSLLSACNVHGDVALGEKVGKILLQL 417 (482)
Q Consensus 385 ~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 417 (482)
.| +...-..++ .|...|+...|..+++...+.
T Consensus 183 ~~~e~dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 12 111122222 344568888999988877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.14 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.26 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.16 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.91 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.9 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.7 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.67 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.53 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.46 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.36 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.35 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.98 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.64 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.49 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.32 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.93 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.44 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.28 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.94 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-20 Score=174.79 Aligned_cols=361 Identities=11% Similarity=-0.006 Sum_probs=271.3
Q ss_pred CChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
|++++|.+.++... .|+ ...+..+-.. |++++|.+.|+.+.+.. |.+..++..+..++.+.| + +++|.
T Consensus 13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g-~--~~~A~ 87 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERG-Q--LQEAI 87 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-C--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhc-c--ccccc
Confidence 66666666665543 232 2223222222 66666667776666643 446667777777777777 7 77777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC---CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHh
Q 011587 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP---MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m 206 (482)
..+....+.. +.+..............+....+........ ................ .+....+...+...
T Consensus 88 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-----LGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-----TSCHHHHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc-----cchhhhhHHHHHHh
Confidence 7777777664 3333344444444444444444444333322 2233444445555555 66777777777766
Q ss_pred hhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---C
Q 011587 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---K 283 (482)
Q Consensus 207 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 283 (482)
. . ..+-+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...+++... .
T Consensus 162 ~--~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 235 (388)
T d1w3ba_ 162 I--E-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp H--H-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred h--c-cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence 5 1 223356778888899999999999999999999887 67888899999999999999999999998764 4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
+...+..+...+.+.|++++|...|++..+... -+..++..+...+...|++++|...++.... ..+.+...+..+.
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~ 312 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHH
Confidence 667888899999999999999999999988643 3577888899999999999999999999988 4567788999999
Q ss_pred HHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 364 DLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
..+...|++++|++.|++. .+.| +..++..+..++...|++++|...|+++++..| .+...|..+..+|.
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P--------~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--------TFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHH
Confidence 9999999999999999987 6666 577888899999999999999999999999999 68889999999999
Q ss_pred hCCC
Q 011587 442 SAER 445 (482)
Q Consensus 442 ~~g~ 445 (482)
+.||
T Consensus 385 ~~~D 388 (388)
T d1w3ba_ 385 EMQD 388 (388)
T ss_dssp HTCC
T ss_pred HcCC
Confidence 8875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5e-21 Score=178.24 Aligned_cols=348 Identities=10% Similarity=-0.006 Sum_probs=285.6
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|++.|+++.+.. |.+...+..+..++.+.| + +++|...++++++.. +-+..++..+..+|.+.|++++|
T Consensus 13 G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~-~--~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCR-R--LDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccc
Confidence 89999999999998864 657888888888898888 8 999999999999875 44678899999999999999999
Q ss_pred HHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 164 KKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
.+.+....+ .+...+......... ......+........ . ...................+....+...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 87 IEHYRHALRLKPDFIDGYINLAAALVA-----AGDMEGAVQAYVSAL--Q-YNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-----HSCSSHHHHHHHHHH--H-HCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc-----ccccccccccccccc--c-cccccccccccccccccccchhhhhHHHH
Confidence 999988763 233334444444444 444444544444443 2 22334445555666667778888888888
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 317 (482)
....... +.....+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|...+++....+.
T Consensus 159 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 234 (388)
T d1w3ba_ 159 LKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHhhccC---cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-
Confidence 8887776 66788889999999999999999999998764 3667899999999999999999999999988653
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLL 395 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 395 (482)
.+...+..+...+.+.|++++|...|++..+ -.+-+...+..+...+...|++++|.+.++.. ..+.+...+..+.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 312 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence 4677788889999999999999999999988 34556788999999999999999999999887 3345788889999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
..+...|++++|...++++++..| .+..++..+..+|.+.|++++|...+++..+.
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFP--------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCT--------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998 68889999999999999999999999998754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.7e-14 Score=125.90 Aligned_cols=226 Identities=13% Similarity=-0.012 Sum_probs=170.1
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhc
Q 011587 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIH 298 (482)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 298 (482)
.....+.+.|++++|...|+++++.. |.+...|..+..+|...|++++|...|++..+ .+...|..+..+|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence 34556778888888888888888776 66777888888888888888888888887763 3567778888888888
Q ss_pred CChHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 299 GKGNEAIRLLDSMRDCGVKP--------------NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 299 ~~~~~a~~~~~~m~~~g~~p--------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
|++++|.+.+++........ +.......+..+...+...+|...+.+..+...-.++...+..+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 88888888888876642210 0001111222333456677888888877764333455677888888
Q ss_pred HHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 365 LLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
.+...|++++|...|++. ...| +..+|..+...+...|++++|.+.|+++++..| .+..++..++.+|.+
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP--------GYIRSRYNLGISCIN 252 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhh--------ccHHHHHHHHHHHHH
Confidence 888999999999888876 3344 577888888888999999999999999998888 678888889999999
Q ss_pred CCCchHHHHHHHHhHh
Q 011587 443 AERWPDVESVRKQMKV 458 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~~ 458 (482)
.|++++|+..|++..+
T Consensus 253 ~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 253 LGAHREAVEHFLEALN 268 (323)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998888764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.4e-13 Score=122.56 Aligned_cols=258 Identities=10% Similarity=-0.059 Sum_probs=186.0
Q ss_pred HHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 181 li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
....+.+ .|++++|+..|++.. . ..| +..+|..+..++...|+++.|...+.++.+.. |.+...+..
T Consensus 25 ~g~~~~~-----~g~~~~A~~~~~~al--~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~ 92 (323)
T d1fcha_ 25 EGLRRLQ-----EGDLPNAVLLFEAAV--Q--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALMA 92 (323)
T ss_dssp HHHHHHH-----TTCHHHHHHHHHHHH--H--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHH-----cCCHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc---ccccccccc
Confidence 3445566 778888888888776 2 234 46677777778888888888888888877776 556777777
Q ss_pred HHHHHHcCCChHHHHHHHHhccC--CC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE--KN----------------VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPNA 320 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~ 320 (482)
+...|...|++++|.+.+++... |+ .......+..+...+.+.+|...+.+..+... .++.
T Consensus 93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~ 172 (323)
T d1fcha_ 93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 172 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence 88888888888888888777642 11 11111223334455678889999888766432 3456
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
..+..+...+...|++++|...+++.... .+-+...|..+...|...|++++|.+.|++. .+.| +..+|..+..+|
T Consensus 173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 250 (323)
T d1fcha_ 173 DVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 250 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 77888888999999999999999999883 3446788999999999999999999999987 4455 677899999999
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCccc---ccccCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTF---VDVACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
.+.|++++|...|+++++..|+-.. .........+..+-.++...|+.+.+...
T Consensus 251 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 251 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999997663110 00112223556677777777877765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2e-09 Score=95.60 Aligned_cols=214 Identities=12% Similarity=0.075 Sum_probs=172.2
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
...++.+...+.+.+..++|.+.++++++.. |.+...|+....++...| ++++|+..+++..+ .+..+|+.+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln---P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 3466777777888999999999999999998 888999999999988876 59999999999864 4778999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC-
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH- 371 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 371 (482)
..+.+.|++++|+..++++.+.... +...|..+...+.+.|++++|...++.+.+. -+-+...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHcccc
Confidence 9999999999999999999987533 7889999999999999999999999999984 24466778877777666554
Q ss_pred -----HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 372 -----LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 372 -----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
+++|++.+.+. .+.| +...|+.+...+.. ...+++.+.++...+..+. ..+...+..++..|...
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~------~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPS------HSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTT------CCCHHHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCC------cCCHHHHHHHHHHHHHH
Confidence 57888888776 4455 67778777665544 4568899999999888873 13455666777776543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1e-09 Score=94.69 Aligned_cols=218 Identities=11% Similarity=-0.051 Sum_probs=153.0
Q ss_pred ccchHHHHHHHHHhhhccCCCCc--CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKP--TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
..+.+.++.-+++... .....+ ...+|..+..++.+.|++++|...|++.++.. |.+..+|+.+..+|.+.|++
T Consensus 12 ~~~~e~al~~~~e~l~-~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~~~a~~~lg~~~~~~g~~ 87 (259)
T d1xnfa_ 12 TLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNF 87 (259)
T ss_dssp CHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCCHHHHhhhchHHHHHHHH
Confidence 4556677777777762 112222 23477788899999999999999999999988 77899999999999999999
Q ss_pred HHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 011587 271 DNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347 (482)
Q Consensus 271 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 347 (482)
++|+..|+++.+ | +..++..+..+|...|++++|...|++..+... .+......+..++.+.+..+.+..+.....
T Consensus 88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 999999999874 3 567889999999999999999999999987642 244444444455556666666666555555
Q ss_pred HhcCCCcCHHHHHHHHHHHhccCCH----HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 348 SKWGVEPHIKHYSCIVDLLGRAGHL----EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.. .+....+. ++..+...... +.+...+... ...| ...+|..+...+...|++++|.+.|+.++...|
T Consensus 167 ~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 167 KS---DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HS---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cc---chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 42 22222222 23333322222 2222222211 1223 234677788899999999999999999999888
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1e-08 Score=92.48 Aligned_cols=261 Identities=13% Similarity=0.011 Sum_probs=171.4
Q ss_pred ccchHHHHHHHHHhhhccCCCCcC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCC---CCCchhHHHHHHHHHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPT----DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM---PENDVFIGTALVDMYS 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~~~ 265 (482)
.|++++|+..+++.. ...-..+ ...+..+..++...|++++|...++++.+.... +......+..+...+.
T Consensus 25 ~g~~~~A~~~~~~aL--~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (366)
T d1hz4a_ 25 DGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 102 (366)
T ss_dssp TTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--hhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 788888888888765 2211111 235666777888889999998888887654310 0112344566777888
Q ss_pred cCCChHHHHHHHHhccC-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHH
Q 011587 266 KCGCLDNALLIFSRMRE-------K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG----VKPNAVTFTSLFAAC 330 (482)
Q Consensus 266 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~ 330 (482)
..|++..+...+..... + ....+..+...+...|+++.+...+....... .......+......+
T Consensus 103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (366)
T d1hz4a_ 103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 88888888888876542 1 12355566777888899999988888776532 222334555566667
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCc-----CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-----CHHHHHHHHHHHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEP-----HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-----DAILWRSLLSACN 399 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~ 399 (482)
...++...+...+.+......-.. ....+..+...+...|++++|...+++. ...| ....+..+..++.
T Consensus 183 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 262 (366)
T d1hz4a_ 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 262 (366)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 778888888877776655211111 1234555666777888999998888876 2221 3445666777888
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
..|++++|...+++++......+. ......++..+..+|.+.|++++|.+.+++..
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 263 LLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 889999999988887753221000 01234567788888899999999988887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=5.8e-09 Score=92.43 Aligned_cols=184 Identities=12% Similarity=0.084 Sum_probs=150.0
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C-HHHHHHHHHHHHhcCChHHHHHH
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N-VLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
..+.+..++++.++... +.+...|...+..+.+.|+++.|..+|+++.+ | + ..+|...+..+.+.|+++.|.++
T Consensus 79 ~~~~a~~i~~ral~~~~--p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 79 FSDEAANIYERAISTLL--KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 45788889998887654 66778889999999999999999999999864 2 2 35789999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC----
Q 011587 308 LDSMRDCGVKPNAVTFTSLFA-ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---- 382 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 382 (482)
|+++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+.+.|..+|++.
T Consensus 157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 9999887543 3333333332 234468999999999999984 4556789999999999999999999999986
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 383 PIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 383 ~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
+..| ....|...+..-...|+.+.+.++++++.+..++
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 3344 3568999999888999999999999999998873
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=1.1e-08 Score=90.63 Aligned_cols=183 Identities=10% Similarity=0.016 Sum_probs=144.7
Q ss_pred ChHHHHHHHHhccC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 269 CLDNALLIFSRMRE----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 269 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
..++|..+|++..+ .+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45788888888653 35567888888899999999999999999876444345578888999999999999999999
Q ss_pred HhHHhcCCCcCHHHHHHHHHH-HhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCc
Q 011587 345 NMKSKWGVEPHIKHYSCIVDL-LGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421 (482)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 421 (482)
++.+. .+.+...|...... +...|+.+.|..+|+.+ ..+.+...|...+..+.+.|+++.|..+|+++++..+.
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~- 235 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL- 235 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS-
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-
Confidence 99883 34455555544443 34468999999999988 33346788999999999999999999999999997761
Q ss_pred ccccccC--CchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 422 TFVDVAC--TSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 422 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.| ....|...+..-...|+.+.+.++.+++.+.
T Consensus 236 -----~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 -----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp -----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred -----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12 2347888888888899999999999987643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=5.4e-09 Score=92.78 Aligned_cols=209 Identities=11% Similarity=0.074 Sum_probs=160.5
Q ss_pred hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccC-chHHHHHHHHHHHHhCCCCCCc
Q 011587 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLG-LLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 176 ~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
..|+.+...+.+ .+.+++|+++++++. .+.| +...|+....++...+ ++++|...++.+++.. +.+
T Consensus 44 ~a~~~~~~~~~~-----~e~~~~Al~~~~~ai----~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---p~~ 111 (315)
T d2h6fa1 44 DVYDYFRAVLQR-----DERSERAFKLTRDAI----ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKN 111 (315)
T ss_dssp HHHHHHHHHHHH-----TCCCHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHHHHHHh-----CCchHHHHHHHHHHH----HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---Hhh
Confidence 456666667777 889999999999987 3456 5567888888888776 5899999999999988 788
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
..+|..+...+.+.|++++|+..++++.+ .+..+|..+...+...|++++|+..++++++.++. +...|+.+...+
T Consensus 112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l 190 (315)
T d2h6fa1 112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVI 190 (315)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHH
Confidence 99999999999999999999999999975 47889999999999999999999999999987543 666777665555
Q ss_pred hccC------cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCCHHHHHHHHHHHHh
Q 011587 331 CHAG------LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPDAILWRSLLSACNV 400 (482)
Q Consensus 331 ~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 400 (482)
.+.+ ..++|...+..+.+. .+.+...|..+...+...| .+++.+.++.. ....+...+..+...|..
T Consensus 191 ~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 191 SNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 4444 367899999888873 3456777777766665544 45555555444 223356666666666643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.7e-08 Score=90.93 Aligned_cols=297 Identities=9% Similarity=-0.032 Sum_probs=190.2
Q ss_pred HHHHHHhCCChhHHHHHhccCCC--CC------chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCCCc-CHH
Q 011587 150 LIHFYASNKDISSGKKVFDQMPM--RS------SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGVKP-TDT 218 (482)
Q Consensus 150 l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~ 218 (482)
....+...|++++|.+++++..+ |+ ..+++.+...+.. .|++++|+..|++.... ..+..+ ...
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-----KGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 34455566666666666655321 11 1245555666666 77777777777765410 111111 223
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHh----CCCC-CCchhHHHHHHHHHHcCCChHHHHHHHHhccC--------CCH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKT----FYMP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--------KNV 285 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~ 285 (482)
++..+...+...|++..+...+...... +..+ ......+..+...+...|+++.+...+..... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 5556667778888888888888776542 1100 11223456677888899999999998887653 133
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CcCHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDC----GVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV--EPHIK 357 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 357 (482)
.++..+...+...+++..+...+.+.... +..+ ....+..+...+...|+++.|...+....+...- .....
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 45666677788889999988888766432 1111 1234555666778889999999999887763111 12245
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccc-cccC
Q 011587 358 HYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV-DVAC 428 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 428 (482)
.+..+...+...|++++|.+.+++. +..| ...++..+...|...|++++|.+.++++++.....+.. ....
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~ 332 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 332 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHH
Confidence 5667888999999999998888765 4444 34567778888999999999999999988764421110 0011
Q ss_pred CchhHHHHHHHHHhCCCchHHHH
Q 011587 429 TSEDFVALSNIYASAERWPDVES 451 (482)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~a~~ 451 (482)
.......++..+.+.++.+++.+
T Consensus 333 ~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 333 EGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp THHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHH
Confidence 23345566677778888777755
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.7e-09 Score=93.31 Aligned_cols=217 Identities=9% Similarity=-0.085 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 011587 232 LLEFGACVHGYMEKTFY-MPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~-~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
+.+.+..-++++..... .|+....++..+...|.+.|++++|+..|++..+ .+..+|+.+..+|.+.|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34455555666655432 2223455788889999999999999999999874 4778999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC
Q 011587 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP 386 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 386 (482)
|++..+.... +..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...+
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999986433 5667888889999999999999999999884 2334444444445555666555554444333 1122
Q ss_pred CHHHHHHHHHHHHhc----CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 387 DAILWRSLLSACNVH----GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+...++ ++..+... +..+.+...+.......+ ....+|..+...|...|++++|...+++....+
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE--------HLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222222 22222211 222333333333333333 234577789999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=6.2e-10 Score=100.24 Aligned_cols=273 Identities=8% Similarity=-0.053 Sum_probs=168.9
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHH------HHHHhcCCc--ccccchHHHHHHHHHhhhccCCCCc-CH
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM------INGYCSQSK--KAKDCAFNALVLFRDMLVDVSGVKP-TD 217 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l------i~~~~~~~~--~~~~~~~~a~~~~~~m~~~~~~~~p-~~ 217 (482)
...++....+.+..++|.++++...+.++..+... +..+...+. ...+++++|+.+++... . ..| +.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l--~--~~pk~~ 107 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--R--VNPKSY 107 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH--H--HCTTCH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH--H--hCCCcH
Confidence 34444444444445788888887777777776542 233333111 12344677777777765 2 234 45
Q ss_pred HHHHHHHHHhhccC--chHHHHHHHHHHHHhCCCCCCchhHH-HHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHH
Q 011587 218 TTMVCVLSVSSQLG--LLEFGACVHGYMEKTFYMPENDVFIG-TALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAM 291 (482)
Q Consensus 218 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 291 (482)
..|..+..++...+ +++.+...+..+.+.. +.+...+ ......+...+.+++|+..++.+.+ .+..+|+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l 184 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC---chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 55555555555444 4677777777777776 4444444 3445666677788888888877764 356677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
..++.+.|++++|...++...+. .|+. ..+...+...+..+++...+..... .-+++...+..+...+...|+
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~ 257 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQS 257 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhh
Confidence 77777888877776655544332 1111 1222334445556666666666665 234444555666667777788
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 372 LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 372 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
.++|...+.+. ...| +..++..+...+...|++++|.+.++++++.+| .+..-|..|...+.
T Consensus 258 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP--------~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP--------MRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG--------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc--------ccHHHHHHHHHHHh
Confidence 88888877766 4444 456677777788888888888888888888887 55556666655444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=6.8e-09 Score=93.22 Aligned_cols=264 Identities=5% Similarity=-0.131 Sum_probs=190.5
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHH---HhCC-------ChhHHHHHhccCCCCCchhHHHHHHHHhcCCccccc
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFY---ASNK-------DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g-------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 194 (482)
.++|.++++++++.. |-+...|+..-..+ ...+ ++++|+.+++...+.++..+......-........+
T Consensus 45 ~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred cHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence 589999999999874 22445565444443 3333 367788888887777777777765443333333345
Q ss_pred chHHHHHHHHHhhhccCCCCcCHHHHH-HHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 011587 195 CAFNALVLFRDMLVDVSGVKPTDTTMV-CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273 (482)
Q Consensus 195 ~~~~a~~~~~~m~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A 273 (482)
++++|+..++++. .. -+++...+. .....+...+.++.|...++.+.+.. +.+...|+.+..++.+.|++++|
T Consensus 124 ~~~~a~~~~~~al--~~-~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 124 NWARELELCARFL--EA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp CHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cHHHHHHHHHHHH--hh-CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHHHH
Confidence 6899999999986 32 233455544 44567778899999999999998887 77899999999999999999998
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 011587 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353 (482)
Q Consensus 274 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 353 (482)
...++...+-..... .....+...+..+++...+....... +++...+..+...+...++.++|...+.+..+. .+
T Consensus 198 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p 273 (334)
T d1dcea1 198 GPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NK 273 (334)
T ss_dssp SSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--Cc
Confidence 877776654322222 23334566678888888888887764 345556667777888889999999999988873 34
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHH
Q 011587 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACN 399 (482)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 399 (482)
.+...+..+...|.+.|+.++|.+.+++. .+.|+ ..-|+.+...+.
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 46678888999999999999999999988 56674 455666655554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=9.4e-07 Score=71.59 Aligned_cols=87 Identities=10% Similarity=-0.032 Sum_probs=71.4
Q ss_pred HHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 340 (482)
...+...|+++.|++.|+++..++..+|..+..+|...|++++|++.|++.++.... +...|..+..+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 556677888888888888888888888888888888888888888888888876533 6677888888888888888888
Q ss_pred HHHHHhHH
Q 011587 341 HLFDNMKS 348 (482)
Q Consensus 341 ~~~~~~~~ 348 (482)
..|++...
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=9.6e-07 Score=76.95 Aligned_cols=195 Identities=11% Similarity=-0.005 Sum_probs=131.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHH
Q 011587 257 GTALVDMYSKCGCLDNALLIFSRMRE-----K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC----GV-KPNAVT 322 (482)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~ 322 (482)
|....+.|...|++++|.+.|.+..+ . -..+|..+..+|.+.|++++|...+++..+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 45556778888889998888887753 1 2357888889999999999999999876542 21 112345
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHhHHhc---CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-------CH-
Q 011587 323 FTSLFAACC-HAGLVEEGLHLFDNMKSKW---GVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-------DA- 388 (482)
Q Consensus 323 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------~~- 388 (482)
+..+...|. ..|++++|...+++..+-. +.++ ...++..+...|...|++++|.+.|++. ...| ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 666666664 4699999999998876521 1111 1446788899999999999999999876 1111 11
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc---hhHHHHHHHHHh--CCCchHHHHHHHHhH
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS---EDFVALSNIYAS--AERWPDVESVRKQMK 457 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~--~g~~~~a~~~~~~m~ 457 (482)
..+...+..+...|+++.|...++++.+..|.. ++. .....++.++.. .+.+++|...|+++.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~------~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF------ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 223445556778899999999999998887621 222 344566666655 345788888776554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.6e-06 Score=70.24 Aligned_cols=117 Identities=12% Similarity=-0.069 Sum_probs=96.1
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|+++.|++.|+++. +|+..+|..+..++...|++++|.+.|++.++.. +.....|..+..+|.+.|++++
T Consensus 18 ~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld---p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 18 KKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp TTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---hhhhhhHHHHHHHHHhhccHHH
Confidence 889999999998764 4677888899999999999999999999999988 7788899999999999999999
Q ss_pred HHHHHHhccC---C----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 011587 273 ALLIFSRMRE---K----------------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318 (482)
Q Consensus 273 A~~~~~~~~~---~----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 318 (482)
|.+.|++... . ...++..+..++.+.|++++|.+.++........|
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9998887642 0 12455667777888888888888888877764443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=2.2e-06 Score=74.53 Aligned_cols=208 Identities=10% Similarity=-0.091 Sum_probs=141.7
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCC
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~ 269 (482)
.+++++|.++|.+. .+.|...+++++|.+.|.++.+... .|+....+|..+..+|.+.|+
T Consensus 30 ~~~~~~Aa~~y~~a-----------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~ 92 (290)
T d1qqea_ 30 SYKFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN 92 (290)
T ss_dssp HHHHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHH-----------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC
Confidence 44567777776654 4678889999999999998876421 012234678889999999999
Q ss_pred hHHHHHHHHhccC-----C----CHHHHHHHHHHHHh-cCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccC
Q 011587 270 LDNALLIFSRMRE-----K----NVLTWTAMATGMAI-HGKGNEAIRLLDSMRD----CGVKP-NAVTFTSLFAACCHAG 334 (482)
Q Consensus 270 ~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~ 334 (482)
+++|...+++..+ . ...++..+...|.. .|++++|+..+++..+ .+..+ ...++..+...+...|
T Consensus 93 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g 172 (290)
T d1qqea_ 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC
Confidence 9999999988763 1 23456667777744 6999999999988753 22222 1345777888999999
Q ss_pred cHHHHHHHHHHhHHhcCCCc----C-HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC------HHHHHHHHHHHHh--
Q 011587 335 LVEEGLHLFDNMKSKWGVEP----H-IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD------AILWRSLLSACNV-- 400 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~----~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~-- 400 (482)
++++|...|+++.......+ . ...+...+..+...|+++.|.+.+++. .+.|. ......++.++..
T Consensus 173 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d 252 (290)
T d1qqea_ 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (290)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcC
Confidence 99999999999887311111 1 123345555677889999999999988 44442 2344556666554
Q ss_pred cCCHhHHHHHHHHHHhc
Q 011587 401 HGDVALGEKVGKILLQL 417 (482)
Q Consensus 401 ~g~~~~a~~~~~~~~~~ 417 (482)
.+.+++|...|+.+.+.
T Consensus 253 ~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 253 SEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp TTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 23467777776644443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.4e-06 Score=64.08 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=73.2
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCH
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDV 404 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 404 (482)
...+.+.|++++|...|++..+. -+-+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44566777888888888887773 3455667777777888888888888777776 3333 667777777788888888
Q ss_pred hHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
++|...|+++++..| .+...+..+.++
T Consensus 88 ~~A~~~~~~a~~~~p--------~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEA--------NNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCT--------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHH
Confidence 888888888888777 555555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=5.6e-07 Score=73.66 Aligned_cols=100 Identities=8% Similarity=-0.145 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLL 395 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 395 (482)
|+...+......+.+.|++++|...|.+..+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67777888888999999999999999998883 3567888999999999999999999999887 6667 577888899
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 396 SACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+|...|++++|...|+++++..|
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999988777
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=4.5e-07 Score=74.27 Aligned_cols=97 Identities=11% Similarity=-0.072 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
|+...+......|.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|...|++..+ -.+-+...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 5566677788899999999999999999988753 4788899999999999999999999999987 234467889999
Q ss_pred HHHHhccCCHHHHHHHHHcC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~ 382 (482)
..+|.+.|++++|+..|++.
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999976
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.9e-06 Score=67.46 Aligned_cols=117 Identities=6% Similarity=-0.043 Sum_probs=87.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGD 403 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 403 (482)
-...|.+.|++++|...|++..+. -+-+...|..+...|...|++++|.+.|++. .+.| +..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 344667888888888888888873 3556778888888888889999998888877 4445 66788888888888999
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH--HhCCCchHHHHH
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY--ASAERWPDVESV 452 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 452 (482)
+++|...++++.+..| .+...+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p--------~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKP--------HDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999988888 5666665554443 334445555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.5e-06 Score=63.99 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=83.2
Q ss_pred HHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 361 CIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
.-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++.+| .+...|..+..
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~g~ 79 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--------DWGKGYSRKAA 79 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc--------chhhHHHHHHH
Confidence 3467788999999999999988 4445 788899999999999999999999999999999 89999999999
Q ss_pred HHHhCCCchHHHHHHHHhHhcC
Q 011587 439 IYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
++...|++++|...+++..+..
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 80 ALEFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999988544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.36 E-value=0.00014 Score=61.82 Aligned_cols=225 Identities=8% Similarity=-0.099 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccCC-CHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMREK-NVLTWTA 290 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ 290 (482)
|+..+..|...+...+++++|.+.|++..+.| +...+..|...|.. ..++..|..++....+. +......
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhc
Confidence 45567777778888999999999999998877 44556667777776 56889999999887754 4455555
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 291 MATGMAI----HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC----CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 291 li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
+...+.. ..+.+.|...++...+.|.... ...+...+ ........+...+..... ..+...+..|
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L 148 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTIL 148 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhh
Confidence 5555443 4678899999999888764322 22222222 234567777777777666 2456677777
Q ss_pred HHHHhc----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 363 VDLLGR----AGHLEEAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 363 i~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
...|.. ..+...+..+++...-..+......+...|.. .++++.|...|++..+.+. +..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~----------~~a~~ 218 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----------GGGCF 218 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----------HHHHH
T ss_pred hhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC----------HHHHH
Confidence 777765 45677777777766223466666666666654 5789999999999988876 45666
Q ss_pred HHHHHHHh----CCCchHHHHHHHHhHhcCCc
Q 011587 435 ALSNIYAS----AERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 435 ~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 462 (482)
.|...|.+ ..+.++|.+.|++..+.|-.
T Consensus 219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 77777775 44899999999998877754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.30 E-value=1.3e-06 Score=63.63 Aligned_cols=88 Identities=15% Similarity=-0.009 Sum_probs=74.5
Q ss_pred HHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 361 CIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
.+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|+..++++++..| .+...+..+..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~la~ 92 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------KDIAVHAALAV 92 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc--------ccccchHHHHH
Confidence 3466678889999999888887 4445 678888888889999999999999999999998 78889999999
Q ss_pred HHHhCCCchHHHHHHHHh
Q 011587 439 IYASAERWPDVESVRKQM 456 (482)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m 456 (482)
.|...|++++|.+.+++.
T Consensus 93 ~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 93 SHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999988875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.6e-05 Score=61.94 Aligned_cols=91 Identities=14% Similarity=-0.013 Sum_probs=71.0
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhc
Q 011587 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIH 298 (482)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 298 (482)
...+.+.+.|++++|...|.++++.. |.+...|..+...|...|++++|...|++..+ .+..+|..+..+|...
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 34556778888888888888888877 66788888888888888888888888887763 3557788888888888
Q ss_pred CChHHHHHHHHHHHhCC
Q 011587 299 GKGNEAIRLLDSMRDCG 315 (482)
Q Consensus 299 ~~~~~a~~~~~~m~~~g 315 (482)
|++++|...+++.....
T Consensus 92 g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK 108 (159)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 88888888888887753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=0.0018 Score=56.22 Aligned_cols=238 Identities=11% Similarity=-0.014 Sum_probs=118.1
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 184 (482)
|..-...+...|.+.| . ++.|..++..+. -|..++..+.+.+++..|.+++.... +..+|..+...
T Consensus 13 n~~d~~~i~~~c~~~~-l--ye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~ 78 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEK-M--YDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFA 78 (336)
T ss_dssp -----------------C--TTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCC-C--HHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 4444444555555655 5 666666665332 24556666667777777777665432 55566666666
Q ss_pred HhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH
Q 011587 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264 (482)
Q Consensus 185 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~ 264 (482)
+.. .....-+ .+. ......++.....++..|...|.+++...+++...... ..+...++-++..|
T Consensus 79 l~~-----~~e~~la-----~i~--~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~---~~~~~~~~~L~~ly 143 (336)
T d1b89a_ 79 CVD-----GKEFRLA-----QMC--GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILY 143 (336)
T ss_dssp HHH-----TTCHHHH-----HHT--TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHH
T ss_pred HHh-----CcHHHHH-----HHH--HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC---ccchHHHHHHHHHH
Confidence 665 4333222 111 22333455555667777777777777777776655332 34555666777777
Q ss_pred HcCCChHHHHHHHHhccC-CC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 011587 265 SKCGCLDNALLIFSRMRE-KN----------VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333 (482)
Q Consensus 265 ~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 333 (482)
++.+ .++..+.+..... -| ...|.-++-.|.+.|+++.|..++- ++ .++..-....+..+.+.
T Consensus 144 ak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~ 217 (336)
T d1b89a_ 144 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKV 217 (336)
T ss_dssp HTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHC
T ss_pred HHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHcc
Confidence 7654 3344444433221 11 1123444455555555555554432 21 23333344555566666
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.+.+...++.....+. .| ...+.++......-++.+..+.+++-
T Consensus 218 ~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 218 ANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp SSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 6666666666655542 23 23455555555555666655555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.5e-05 Score=61.52 Aligned_cols=133 Identities=11% Similarity=-0.043 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.+......+.+.|++++|+..|++.++.-..... ..+.-......+ ...+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh--------HHHHHHHHHHHH
Confidence 3445556677778888888877776653110000 000001111111 123677788889
Q ss_pred hccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 367 GRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
.+.|++++|+..+++. .+.| +..+|..+..+|...|++++|...|+++++.+| .+......+..+..+.+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P--------~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--------NNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------SCHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHH
Confidence 9999999999999887 4455 788899999999999999999999999999998 67888777777766555
Q ss_pred CchHH
Q 011587 445 RWPDV 449 (482)
Q Consensus 445 ~~~~a 449 (482)
...+.
T Consensus 145 ~~~~~ 149 (170)
T d1p5qa1 145 RQLAR 149 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.9e-05 Score=58.00 Aligned_cols=94 Identities=12% Similarity=-0.041 Sum_probs=73.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC---HHHHHHHHHcC-CCCCCH---HHHHHHHH
Q 011587 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH---LEEAYNFIMGI-PIKPDA---ILWRSLLS 396 (482)
Q Consensus 324 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 396 (482)
..++..+...+++++|++.|++..+. -+.+..++..+..++.+.++ .++|+.+|++. ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677778888999999999998883 45577888888888887554 45688888886 434432 36777888
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+|.+.|++++|.+.|+++++..|
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhhHHHHHHHHHHHHhCc
Confidence 89999999999999999999988
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.03 E-value=1.9e-05 Score=57.26 Aligned_cols=84 Identities=14% Similarity=-0.008 Sum_probs=43.2
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCC
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGK 300 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 300 (482)
...+.+.|++++|...++++++.. |.+...|..+..++.+.|++++|+..|++..+ .+..+|..+..+|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 334445555555555555555554 44455555555555555555555555555442 234445555555555555
Q ss_pred hHHHHHHHHH
Q 011587 301 GNEAIRLLDS 310 (482)
Q Consensus 301 ~~~a~~~~~~ 310 (482)
+++|.+.|++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=5e-05 Score=55.71 Aligned_cols=96 Identities=8% Similarity=-0.071 Sum_probs=75.1
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh---HHHHHHHHhccCC--C---HHHHHHHH
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL---DNALLIFSRMREK--N---VLTWTAMA 292 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~---~~~~~~li 292 (482)
..+++.+...++++.|++.|+..+..+ |.+..++..+..++.+.++. ++|+.+|+++.+. + ..+|..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~---p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 467788888889999999999999988 77888888888888876544 4688888888752 2 23677788
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 321 (482)
.+|.+.|++++|++.|+++.+. .|+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 8888899999999999988875 45433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.98 E-value=0.00078 Score=56.86 Aligned_cols=226 Identities=11% Similarity=-0.053 Sum_probs=122.1
Q ss_pred hhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCChhHHHHHhccCCCC-CchhHHH
Q 011587 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS----NKDISSGKKVFDQMPMR-SSATWNA 180 (482)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ 180 (482)
+..+..+-..+...+ + +++|.+.|++..+.| +..++..|..+|.. ..+...|...+.....+ +......
T Consensus 2 p~~~~~lG~~~~~~~-d--~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEK-D--FTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhc
Confidence 344555555555555 6 888888888887766 44555556666655 45667777776665433 3344444
Q ss_pred HHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh----hccCchHHHHHHHHHHHHhCCCCCCchhH
Q 011587 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS----SQLGLLEFGACVHGYMEKTFYMPENDVFI 256 (482)
Q Consensus 181 li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 256 (482)
+...+.. +.....+.+.|...++... ..|.... ...+...+ ........+...+......+ +...
T Consensus 76 l~~~~~~-~~~~~~~~~~a~~~~~~a~--~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~ 144 (265)
T d1ouva_ 76 LGNLYYS-GQGVSQNTNKALQYYSKAC--DLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDG 144 (265)
T ss_dssp HHHHHHH-TSSSCCCHHHHHHHHHHHH--HTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred ccccccc-ccccchhhHHHHHHHhhhh--hhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhccc-----ccch
Confidence 4333322 1112556677777777665 4333222 12222222 12333444555555544433 4455
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 257 GTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTAMATGMAI----HGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 257 ~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
+..|...|.. ..+...+..+++...+ .+..+...+...|.. ..++++|...|++..+.| +...+..|.
T Consensus 145 ~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 145 CTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 5566666654 3455566666665544 355555555555544 456777777777776665 334444455
Q ss_pred HHHhc----cCcHHHHHHHHHHhHHhcCC
Q 011587 328 AACCH----AGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 328 ~~~~~----~~~~~~a~~~~~~~~~~~~~ 352 (482)
..|.+ ..+.++|.++|++..+. |.
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~-g~ 249 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKL-GA 249 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH-TC
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHC-cC
Confidence 55443 33566677777776663 53
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=7.7e-05 Score=58.52 Aligned_cols=131 Identities=8% Similarity=-0.056 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.+......+.+.|++++|+..|.+..+. ............. . . --+.....|..+..+|
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~-~--~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------A-K--LQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------G-G--GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------H-H--hChhhHHHHHHHHHHH
Confidence 3455566677788888888888776531 0000000000000 0 0 0122455777888999
Q ss_pred hccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 367 GRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
.+.|++++|+..+.+. .+.| +...|..+..++...|++++|...|+++++..| .+......+..+..+..
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p--------~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--------EDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHH
Confidence 9999999999999888 5566 778899999999999999999999999999999 67777777766655444
Q ss_pred Cc
Q 011587 445 RW 446 (482)
Q Consensus 445 ~~ 446 (482)
..
T Consensus 160 ~~ 161 (169)
T d1ihga1 160 AQ 161 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.91 E-value=0.00014 Score=56.80 Aligned_cols=92 Identities=7% Similarity=-0.055 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
..|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++.+| .+.....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P--------~n~~~~~ 136 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--------QNKAARL 136 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------TCHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHH
Confidence 35667788889999999999999887 3334 788888899999999999999999999999998 7777777
Q ss_pred HHHHHHHhCCCchH-HHHHHHHh
Q 011587 435 ALSNIYASAERWPD-VESVRKQM 456 (482)
Q Consensus 435 ~l~~~~~~~g~~~~-a~~~~~~m 456 (482)
.+.....+.+...+ ..+++..|
T Consensus 137 ~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 137 QIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 77777666555443 33444444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=7.3e-05 Score=58.68 Aligned_cols=64 Identities=5% Similarity=-0.095 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+|+.+..+|.+.|++++|+..++.+++.+| .+..++..+..+|...|++++|...|++..+.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDS--------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccc--------cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4577788889999999999999999999999 799999999999999999999999999987654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.90 E-value=4.8e-05 Score=60.19 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=84.2
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHH-HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhH
Q 011587 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE-EAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406 (482)
Q Consensus 328 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 406 (482)
......|++++|.+.|.+...-+.-.+-. .+ ..+.+- ....-++. -....+..+...+...|++++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~--------~~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLD--------DL-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG--------GG-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccc--------cC-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchH
Confidence 45667788888888888877632111100 00 001111 00111111 123567778899999999999
Q ss_pred HHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH-----hcCCccCCcc
Q 011587 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK-----VKRVETEPGS 467 (482)
Q Consensus 407 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~ 467 (482)
|...++++++..| -+...|..++.+|.+.|++++|++.|+++. +.|+.|.+.+
T Consensus 86 Al~~~~~al~~~P--------~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 86 VIAELEALTFEHP--------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHST--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHhCC--------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999999 899999999999999999999999999975 4688887753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=3.1e-05 Score=57.62 Aligned_cols=94 Identities=9% Similarity=0.102 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc-----
Q 011587 358 HYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS----- 430 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----- 430 (482)
-+..+...|.+.|++++|++.|.+. .+.| +...+..+..+|.+.|++++|...++++++..| .+.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~--------~~~~~~~~ 77 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--------ENREDYRQ 77 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------HSTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc--------ccHHHHHH
Confidence 3556778899999999999999887 4444 688899999999999999999999999999877 333
Q ss_pred --hhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 431 --EDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 431 --~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+|..+...+...+++++|...+++....
T Consensus 78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 35667778888899999999999886643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.82 E-value=0.00022 Score=54.70 Aligned_cols=126 Identities=13% Similarity=-0.041 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
..+......+.+.|++.+|+..|.+....- |.. ......... ..... ....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~---~~~~~-----~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILL---DKKKN-----IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHH---HHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHH---Hhhhh-----HHHHHHhhHHHH
Confidence 345556667778888888888888776531 100 000000000 00110 123477788899
Q ss_pred HhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 366 LGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|...|+++++.+| .|..+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P--------~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP--------NNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHH
Confidence 99999999999999887 4445 788999999999999999999999999999998 6766666554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=8e-06 Score=76.80 Aligned_cols=220 Identities=10% Similarity=-0.095 Sum_probs=112.9
Q ss_pred cHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCChhHHHHH
Q 011587 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV-LVATTLIHFYASNKDISSGKKV 166 (482)
Q Consensus 88 ~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 166 (482)
+|.+.|++..+ +.|.....+..+-.++...+ + +++| +++++.. .|+. ..++...... ...+..+.+.
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~-~--l~ea---ye~~i~~--dp~~a~~~~~e~~Lw--~~~y~~~ie~ 71 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQ-A--LQDL---YQKMLVT--DLEYALDKKVEQDLW--NHAFKNQITT 71 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHH-H--HHHH---HHHHHHH--CHHHHHHHTHHHHHH--HHHTHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHc-h--HHHH---HHHHHHc--ChhhHHHHhHHHHHH--HHHHHHHHHH
Confidence 57788888887 44634555666666666655 5 6544 6666654 2321 1121111111 1123444555
Q ss_pred hccCCC----CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHH
Q 011587 167 FDQMPM----RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHG 241 (482)
Q Consensus 167 ~~~~~~----~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 241 (482)
++...+ ++.......+..+... ..+.++.++..+.... ++.| +...+..+...+.+.|+.+.|...+.
T Consensus 72 ~r~~~k~~~~~~~~~~~~~~~~~l~~---a~~~Y~~ai~~l~~~~----~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 72 LQGQAKNRANPNRSEVQANLSLFLEA---ASGFYTQLLQELCTVF----NVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp HHHHHSCSSCTTTTHHHHHHHHHHHH---HHHHHHHHHHHHTC-----------------------------------CC
T ss_pred HHHhcccccCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----CCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 544321 2222222222222220 0455666665555433 3444 44566777777788888888887777
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 011587 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 318 (482)
...... ....+..+...+...|++++|...|++..+ | +..+|+.|...+...|+..+|...|.+..... .|
T Consensus 145 ~al~~~-----~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~ 218 (497)
T d1ya0a1 145 SSCSYI-----CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FP 218 (497)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BC
T ss_pred HHhCCC-----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CC
Confidence 665543 235667788888888899999988888764 4 55788888888888899988988888887764 45
Q ss_pred CHHHHHHHHHHHhc
Q 011587 319 NAVTFTSLFAACCH 332 (482)
Q Consensus 319 ~~~~~~~ll~~~~~ 332 (482)
-..++..|...+.+
T Consensus 219 ~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 219 FPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66777777776654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=6.2e-06 Score=77.59 Aligned_cols=133 Identities=11% Similarity=-0.025 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 011587 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378 (482)
Q Consensus 299 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 378 (482)
+.++.++..+....... .++...+..+...+.+.|+.+.|...+...... . ...++..+...+...|++++|...
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHH
Confidence 34444444444333221 224445556666667777777777766665542 1 134566677777777888888777
Q ss_pred HHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 379 IMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 379 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
|++. .+.| +...|+.|...+...|+..+|...|.+.+...+ |.+.++..|...+.+..
T Consensus 175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~--------~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF--------PFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB--------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHHHHhh
Confidence 7776 4455 456777777777777888888888888877777 77777777777665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00015 Score=53.69 Aligned_cols=92 Identities=9% Similarity=-0.015 Sum_probs=70.4
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C-------HHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N-------VLTWT 289 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~~ 289 (482)
+..+.+.+.+.|++++|...|.+.++.+ |.+..++..+..+|.+.|++++|+..++++.+ | + ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4456677888888888888888888887 66788888888888888888888888888764 1 1 23566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
.+...+...+++++|+..|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6777777788888888888776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.70 E-value=0.00024 Score=54.51 Aligned_cols=64 Identities=8% Similarity=-0.051 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+|..+..+|.+.|++++|...++++++.+| .+..+|..++.++...|++++|...|++..+.+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p--------~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK--------NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc--------hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4677788899999999999999999999999 899999999999999999999999999987654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.67 E-value=0.00034 Score=54.66 Aligned_cols=88 Identities=6% Similarity=-0.032 Sum_probs=50.7
Q ss_pred HHHHHHcCCChHHHHHHHHhccC-------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE-------------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 320 (482)
....+.+.|++++|+..|.+..+ .....|..+..+|.+.|++++|+..+++.++... .+.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~ 111 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNT 111 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhh
Confidence 33445556666666665554431 1233455555666666666666666666665532 245
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
..|..+..++.+.|++++|...|++..+
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666666666666666666666666665
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.00063 Score=53.47 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=77.7
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChH
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 302 (482)
........|++++|.+.|.+.+...-.+... .....+-+...-..+.......+..+..++.+.|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 3345677788888888888877653211100 0011111111112222234456777788888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCcCHHH
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS----KWGVEPHIKH 358 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 358 (482)
+|+..++++.+... -+...|..++.+|.+.|+..+|.+.|+++.+ ..|+.|+..+
T Consensus 85 ~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 85 AVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888877643 3777888888888888888888888887644 2577777654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.46 E-value=0.0011 Score=51.62 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=11.6
Q ss_pred HHHHHHHcCCChHHHHHHHHhc
Q 011587 259 ALVDMYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~ 280 (482)
-..+.+.+.|++++|...|++.
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~a 41 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKI 41 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=0.00033 Score=53.06 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=44.0
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcC-----------CHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHG-----------DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
++|+..|++. .+.| +..+|..+..+|...| .+++|.+.|+++++..| .+......|...
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P--------~~~~~~~~L~~~ 129 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--------DNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC--------CHHHHHHHHHHH
Confidence 4444444444 2333 4445555555544332 46889999999999998 455444444433
Q ss_pred HHhCCCchHHHHHHHHhHhcCC
Q 011587 440 YASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.+|.+++.+..++|+
T Consensus 130 -------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 -------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp -------HTHHHHHHHHHHSSS
T ss_pred -------HHHHHHHHHHHHHhc
Confidence 466777777777665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.35 E-value=0.00035 Score=58.82 Aligned_cols=123 Identities=13% Similarity=0.008 Sum_probs=87.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
..+.|++++|+..+++..+... -+...+..+...++..|++++|...++...+. .+-+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 3467999999999999998853 37888999999999999999999999999883 22234455555555554444444
Q ss_pred HHHHHHcC--CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 375 AYNFIMGI--PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 375 A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
+..-.... -..| +...+......+...|+.++|...++++.+..|+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 43332222 1123 3334444556678899999999999999998883
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.20 E-value=0.00028 Score=59.47 Aligned_cols=119 Identities=8% Similarity=-0.044 Sum_probs=66.4
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEA 304 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a 304 (482)
.+.|++++|...+++.++.. |.+...+..+...|+..|++++|.+.|+...+ | +...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 45677777777777777776 66777777777777777777777777777763 3 233333333333322222222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 305 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
..-...-...+..++...+......+...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111111111222233334445566677777777777776663
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.0013 Score=50.29 Aligned_cols=99 Identities=13% Similarity=-0.035 Sum_probs=67.9
Q ss_pred HHHHH--HHHHhccCCHHHHHHHHHcC----CCCC----------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCc
Q 011587 358 HYSCI--VDLLGRAGHLEEAYNFIMGI----PIKP----------DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421 (482)
Q Consensus 358 ~~~~l--i~~~~~~g~~~~A~~~~~~~----~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 421 (482)
+|..+ ...+...|++++|++.|++. ...| ...+|+.+..+|...|++++|...+++.++..+..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 34455667777777777655 1112 14578888999999999999999999988754310
Q ss_pred ccccccC-----CchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 422 TFVDVAC-----TSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 422 ~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
.. ..+ ....+..+..+|...|++++|...|++..+
T Consensus 89 ~~--~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GE--LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CC--TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cc--ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001 123567789999999999999999998764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.09 E-value=0.005 Score=46.86 Aligned_cols=91 Identities=14% Similarity=-0.029 Sum_probs=58.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCc----------CHHHHHHHHHHHhccCCHHHHHHHHHcC--------CCCCC---
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEP----------HIKHYSCIVDLLGRAGHLEEAYNFIMGI--------PIKPD--- 387 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~--- 387 (482)
.+.+.|++++|+..|++..+-..-.| ....|+.+..+|.+.|++++|.+.+++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34445666666666666554211111 1346667777777777777776666554 12222
Q ss_pred --HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 388 --AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 388 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+..+..+|...|++++|...|+++++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 22566778889999999999999999988755
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.03 E-value=0.081 Score=45.41 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
...+++.+.|...++.+.-.+..++
T Consensus 281 ~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHH
Confidence 4555555566655555444444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.02 E-value=0.0012 Score=49.79 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=47.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC----------ChHHHHHHHHhccC---CCHHHHHHHHHHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG----------CLDNALLIFSRMRE---KNVLTWTAMATGM 295 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~---~~~~~~~~li~~~ 295 (482)
+.+.+++|...++...+.. |.+..++..+..++...+ .+++|+..|++..+ .+..+|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 3445566666666666665 556666666666555332 23445555544442 2344454454444
Q ss_pred HhcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 296 AIHG-----------KGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 296 ~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
...| .+++|.+.|++..+. .|+...|..-+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L 126 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 126 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHH
Confidence 4332 245566666666553 34444444333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0029 Score=43.51 Aligned_cols=72 Identities=15% Similarity=0.032 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC--------CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI--------PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
..+-.+...+.+.|++++|...|++. ...++ ..+++.+..++.+.|++++|...++++++..|
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-------- 77 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-------- 77 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc--------
Confidence 34446677777788888887777655 11122 46788888899999999999999999999988
Q ss_pred CCchhHHHH
Q 011587 428 CTSEDFVAL 436 (482)
Q Consensus 428 ~~~~~~~~l 436 (482)
.+..++..+
T Consensus 78 ~~~~a~~Nl 86 (95)
T d1tjca_ 78 EHQRANGNL 86 (95)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 566666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.22 Score=44.84 Aligned_cols=117 Identities=9% Similarity=0.045 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCC-CCcCHHHHHHHHH
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLS 225 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~p~~~~~~~l~~ 225 (482)
-...+..+.+.++++.....+...+ .+...-.....+... .|+...|...+...- ..| ..|+
T Consensus 75 r~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~-----~g~~~~a~~~~~~lW--~~~~~~p~--------- 137 (450)
T d1qsaa1 75 QSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWN-----TGQSEEAWQGAKELW--LTGKSQPN--------- 137 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--SCSSCCCT---------
T ss_pred HHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHH-----cCChHHHHHHHHHHH--hcCCCCch---------
Confidence 3445666777888877777665432 233333455566666 777777777766654 222 2222
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHH
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 292 (482)
....++..+.+.| ..+...+-.-+......|++..|..+...+...........+
T Consensus 138 ---------~c~~l~~~~~~~~---~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~ 192 (450)
T d1qsaa1 138 ---------ACDKLFSVWRASG---KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAII 192 (450)
T ss_dssp ---------HHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHH
Confidence 2223344444444 223333344444555556666666666555443333333333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.0046 Score=42.40 Aligned_cols=71 Identities=11% Similarity=-0.155 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
..+-.+...+.+.|++++|...|+++++..+...... .....++..+..++.+.|++++|...+++..+.+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~-~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST-IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC-ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3344578889999999999999999998765211000 0124678899999999999999999999988654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.32 E-value=0.093 Score=36.83 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=102.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
+.-.|..++..+++.+..... +..-||.++.-....-+-+...++++..-+-+.+ ..++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 455677888888888776642 5566777777666667777777777776663222 24556666
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHH
Q 011587 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 375 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
....+-.++ .+...++..+..+..+|+-+.-.++++.+.+.+. +++.....+..+|.+.|...++-+++.
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~--------i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNE--------VSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC--------SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 666665554 2444556677788889999999999998888766 889999999999999999999999999
Q ss_pred HhHhcCCc
Q 011587 455 QMKVKRVE 462 (482)
Q Consensus 455 ~m~~~~~~ 462 (482)
+.-++|+.
T Consensus 145 ~ACe~G~K 152 (161)
T d1wy6a1 145 EACKKGEK 152 (161)
T ss_dssp HHHHTTCH
T ss_pred HHHHHhHH
Confidence 98888874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.93 E-value=0.19 Score=36.28 Aligned_cols=111 Identities=10% Similarity=-0.107 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEEA 375 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 375 (482)
++++|...|++..+.|.. .....|. .....+.++|.+++++..+. | +......|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 456666666666665521 2222222 23344556666666665552 3 22333333333332 2344555
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCC
Q 011587 376 YNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 376 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 419 (482)
.++|++.--.-++.....|...|.. ..|.++|..+|+++.+.|.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 5555544111133333333333332 2345555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.44 E-value=0.39 Score=34.50 Aligned_cols=105 Identities=6% Similarity=-0.044 Sum_probs=72.7
Q ss_pred ChHHHHHHHHhccC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHH
Q 011587 269 CLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH----AGLVEEGLHLF 343 (482)
Q Consensus 269 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 343 (482)
|+++|..+|++..+ .+......|.. ....+.++|...+++.-+.| +......|-..|.. ..+.++|.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 78899999998764 34444444433 34567899999999998887 34445555555543 56789999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcC
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGI 382 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 382 (482)
++..+. |. +.....|...|.. ..+.++|.++|++.
T Consensus 83 ~~aa~~-g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A 121 (133)
T d1klxa_ 83 SKACGL-ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 121 (133)
T ss_dssp HHHHHT-TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred hhhhcc-Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence 999884 53 4445556555654 45788888888764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.15 E-value=0.57 Score=32.77 Aligned_cols=119 Identities=10% Similarity=-0.008 Sum_probs=66.7
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---------------------CCHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---------------------KNVL 286 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------------~~~~ 286 (482)
...|.+++..++..+..... +..-||-++.-....-+-+-..++++.+-+ .+..
T Consensus 13 ildG~ve~Gveii~k~~~ss-----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se 87 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNE 87 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCH
T ss_pred HHhhhHHhHHHHHHHHcccC-----CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHH
Confidence 34566666666666665543 222223333333333344444444444332 1223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 353 (482)
-.+.-++.+..+|+-++-.++++.+.+. -+|++.....+..+|.+.|+..++.+++.++-++ |+.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K 152 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 152 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence 3445566667777777777777776553 3566666677777777777777777777777774 553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.28 E-value=0.47 Score=33.37 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHHhccC---CHHHHHHHHHcC-CCCC-CH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 354 PHIKHYSCIVDLLGRAG---HLEEAYNFIMGI-PIKP-DA-ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 354 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|+..+--...-++++.. +.++++.+|++. ...| +. ..+-.|.-+|.+.|++++|.+.++.+++.+|
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 45555555566666544 445677777776 2234 33 3445566677788888888888888888877
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.88 E-value=1.3 Score=29.32 Aligned_cols=63 Identities=16% Similarity=0.342 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++|+..+.+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4456666777777777788888888888888888888888888888877533 23445555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.94 E-value=3.6 Score=28.67 Aligned_cols=72 Identities=6% Similarity=-0.008 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHhcc---CcHHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH
Q 011587 316 VKPNAVTFTSLFAACCHA---GLVEEGLHLFDNMKSKWGVEPHI-KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI 389 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 389 (482)
..|+..|-.....++.++ .+.++++.+++++.+. .+.+. ..+-.|.-+|.+.|++++|.+.++.. .+.|+..
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 345555555566666654 4567899999999873 23343 56677888899999999999999988 6667543
|