Citrus Sinensis ID: 011590

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
Protein Sequence
MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHccccEEEEccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccccEEcccHHHHHHHccccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccEEEEEcccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHHcccccEEccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEcccHHcccHHHHHHHHHHcccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccHccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccccEEEEEcHHHHHHHccccHHcccccEEEEEEccccccHHHHHHHHHHHccccEEEEEcccccccccccHHHHEcEEEEccccccccEEEccHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHccccEEEEccHHHEccHHHHHHHHHHHccccEEHHHcccccccccccccHHHHHHHHHHcccEEEEEEEEEccccccccHHHHccccEEEEEEccccccccccccccEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccccccEEEEcccccccccccHHHHEHEEcccccEEEEEEccHHHHHHHHHHHHHHHccccEEEc
Coil and Loop (DISEMBL)
magselqnsqnaqidgNTLAAKSLSLFGathmfgvvgipvTSLANRAVQLGVRFIAFHNEQSAGYAASAygyltgkpgilltvsgpgcvhglaglsngmintWPIVMisgscdqkdfgrgdfqeldqveavkpfskFAVKAKDITEVPKCVAQVLERAvsgrpggcyldlptdvlhqTISVSEAEKLLKEAESAKETvtqggivnsDIDKAVSLLKEAkkplivfgkGAAYARAEGELKKLVEstgipflptpmgkgllpdthplAATAARSLAIGQCDVALVVGARLNWllhfgeppkwskdvKFVLVDVCKEEIelrkphlglvgDAKKVLEMINKEIkdepfclgknhpwvEAIWKKTKDNVLKMEVQLAKDvvpfnfmtpMRIIRDAilgvgspapilvsegantmDVGRAVLVqteprcrldagtwgtmGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI
Flexible Loop (DISEMBL)
MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFavkakditevPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAketvtqggivnsdIDKAVSLLKEakkplivfgKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHfgeppkwskdvKFVLVDVCKEEielrkphlglvgdAKKVLEMINKEIkdepfclgknhPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI
Low Complexity Region (SEG)
MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQsagyaasaygyLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVseaekllkeaesakeTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI
Disordered region (IsUnstruct)
******************LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVS*****************QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI***
Disordered Region (DISOPRED)
******************LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKE***************SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD**F**GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI
Disordered Region (DISEMBL)
***********AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI
Disordered Region (DISPRO)
*************IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISxxxxxxxxxxxxxxxxxxxxxGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	482	2.2.26 [Sep-21-2011]
Q9LF46	572	2-hydroxyacyl-CoA lyase O	yes	no	0.950	0.800	0.783	0.0
Q8CHM7	581	2-hydroxyacyl-CoA lyase 1	yes	no	0.946	0.784	0.426	1e-109
Q9UJ83	578	2-hydroxyacyl-CoA lyase 1	yes	no	0.952	0.794	0.419	1e-107
Q9QXE0	581	2-hydroxyacyl-CoA lyase 1	yes	no	0.946	0.784	0.413	1e-105
Q54DA9	580	Probable 2-hydroxyacyl-Co	yes	no	0.927	0.770	0.417	2e-97
P40149	568	Oxalyl-CoA decarboxylase	N/A	no	0.946	0.802	0.411	8e-97
P0AFI0	564	Probable oxalyl-CoA decar	N/A	no	0.925	0.790	0.419	2e-90
P0AFI1	564	Probable oxalyl-CoA decar	N/A	no	0.925	0.790	0.419	2e-90
Q9Y7M1	568	Putative 2-hydroxyacyl-Co	yes	no	0.929	0.788	0.417	2e-82
P39994	560	Putative 2-hydroxyacyl-Co	yes	no	0.914	0.787	0.389	5e-77

>sp|Q9LF46|HACL_ARATH 2-hydroxyacyl-CoA lyase OS=Arabidopsis thaliana GN=HACL PE=2 SV=1

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/458 (78%), Positives = 409/458 (89%)

Query: 13  QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGY 72
            IDGN L AKSLS  G THMFGVVGIPVTSLA+RA+ LG+RFIAFHNEQSAGYAASAYGY
Sbjct: 11  SIDGNVLVAKSLSHLGVTHMFGVVGIPVTSLASRAMALGIRFIAFHNEQSAGYAASAYGY 70

Query: 73  LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
           LTGKPGILLTVSGPGCVHGLAGLSN  +NTWP+VMISGSCDQ+D GRGDFQELDQ+EAVK
Sbjct: 71  LTGKPGILLTVSGPGCVHGLAGLSNAWVNTWPMVMISGSCDQRDVGRGDFQELDQIEAVK 130

Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
            FSK + KAKD+ E+P CV++VL+RAVSGRPGGCYLD+PTDVL Q IS SEA+KL+ E E
Sbjct: 131 AFSKLSEKAKDVREIPDCVSRVLDRAVSGRPGGCYLDIPTDVLRQKISESEADKLVDEVE 190

Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
            +++     G + S+I+ AVSLL++A++PLIVFGKGAAY+RAE ELKKLVE TGIPFLPT
Sbjct: 191 RSRKEEPIRGSLRSEIESAVSLLRKAERPLIVFGKGAAYSRAEDELKKLVEITGIPFLPT 250

Query: 253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312
           PMGKGLLPDTH  +ATAARSLAIG+CDVALVVGARLNWLLHFGE PKW KDVKF+LVDV 
Sbjct: 251 PMGKGLLPDTHEFSATAARSLAIGKCDVALVVGARLNWLLHFGESPKWDKDVKFILVDVS 310

Query: 313 KEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQL 372
           +EEIELRKPHLG+VGDAK V+ ++N+EIKD+PFCLGK++ WVE+I KK K+N  KME+QL
Sbjct: 311 EEEIELRKPHLGIVGDAKTVIGLLNREIKDDPFCLGKSNSWVESISKKAKENGEKMEIQL 370

Query: 373 AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWG 432
           AKDVVPFNF+TPMRIIRDAIL V  P+P++VSEGANTMDVGR+VLVQ EPR RLDAGTWG
Sbjct: 371 AKDVVPFNFLTPMRIIRDAILAVEGPSPVVVSEGANTMDVGRSVLVQKEPRTRLDAGTWG 430

Query: 433 TMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
           TMGVGLGYCIAAA+A P+RLVVAVEGDSGFGFSA+EVE
Sbjct: 431 TMGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVE 468

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q8CHM7|HACL1_RAT 2-hydroxyacyl-CoA lyase 1 OS=Rattus norvegicus GN=Hacl1 PE=1 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/476 (42%), Positives = 293/476 (61%), Gaps = 20/476 (4%)

Query: 4   SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSA 63
           +E  +    Q+ G  + A++L      +MFGVVGIPVT +A  A +LG+++I   NEQ+A
Sbjct: 7   AEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGMRNEQAA 66

Query: 64  GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
            YAASA GYLTG+PG+ L VSGPG +H L G++N  +N WP+++I GS ++     G FQ
Sbjct: 67  CYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQEAMGAFQ 126

Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL---HQTIS 180
           E  QVEA + +SKF+ +   I  +P  + + +  ++ GRPG CY+D+P D++     T S
Sbjct: 127 EFPQVEACRLYSKFSARPSSIQHIPFVIEKAVRSSIYGRPGACYIDVPADLVTLQESTTS 186

Query: 181 VSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240
           +   E  +    S  ET        S +  A S+L+ AK+PL++ GKGAAY+ AE  ++K
Sbjct: 187 IKYKECCMPPPLSLAET--------SAVRAAASVLRSAKQPLLIIGKGAAYSHAEDSIRK 238

Query: 241 LVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKW 300
           LVE   +PFLPTPMGKG++PD HP    AARS A+   DV ++ GARLNW+LHFG PP++
Sbjct: 239 LVELCNLPFLPTPMGKGVVPDNHPNCVGAARSRALQFADVIVLFGARLNWILHFGLPPRY 298

Query: 301 SKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK 359
             DVKF+ +D+C EE+    +P + L+GD   V + + ++    P+    +  W E + +
Sbjct: 299 QADVKFIQIDICAEELGNNVRPSVTLLGDVNAVSKQLLEQFVKNPWQYPTDSKWWETLRE 358

Query: 360 KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ 419
           K K+N    +   +K  +P N+ T    +++ +         +VSEGANTMD+GR VL  
Sbjct: 359 KRKNNEAVSKELASKKSLPMNYYTVFYHVQEQL----PRNCFIVSEGANTMDIGRTVLQN 414

Query: 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPER----LVVAVEGDSGFGFSAVEVEV 471
             PR RLDAG++GTMGVGLG+ IAAA+   ER     V+ VEGDS FGFS +EVE 
Sbjct: 415 YLPRHRLDAGSFGTMGVGLGFAIAAAVVAKERSPGQRVICVEGDSAFGFSGMEVET 470

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9UJ83|HACL1_HUMAN 2-hydroxyacyl-CoA lyase 1 OS=Homo sapiens GN=HACL1 PE=1 SV=2

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 292/479 (60%), Gaps = 20/479 (4%)

Query: 1   MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNE 60
           M  S        Q+ G  + A++L      ++FG+VGIPVT +A  A QLG+++I   NE
Sbjct: 1   MPDSNFAERSEEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGMRNE 60

Query: 61  QSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG 120
           Q+A YAASA GYLT +PG+ L VSGPG +H L G++N  +N WP+++I GS ++     G
Sbjct: 61  QAACYAASAIGYLTSRPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQETMG 120

Query: 121 DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS 180
            FQE  QVEA + ++KF+ +   I  +P  + + +  ++ GRPG CY+D+P D ++  ++
Sbjct: 121 AFQEFPQVEACRLYTKFSARPSSIEAIPFVIEKAVRSSIYGRPGACYVDIPADFVNLQVN 180

Query: 181 VSE---AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE 237
           V+     E+ +    S  ET        S +  A S+++ AK+PL++ GKGAAYA AE  
Sbjct: 181 VNSIKYMERCMSPPISMAET--------SAVCTAASVIRNAKQPLLIIGKGAAYAHAEES 232

Query: 238 LKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP 297
           +KKLVE   +PFLPTPMGKG++PD HP    AARS A+   DV ++ GARLNW+LHFG P
Sbjct: 233 IKKLVEQYKLPFLPTPMGKGVVPDNHPYCVGAARSRALQFADVIVLFGARLNWILHFGLP 292

Query: 298 PKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA 356
           P++  DVKF+ VD+C EE+    KP + L+G+   V + + +E+   P+       W + 
Sbjct: 293 PRYQPDVKFIQVDICAEELGNNVKPAVTLLGNIHAVTKQLLEELDKTPWQYPPESKWWKT 352

Query: 357 IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV 416
           + +K K N    +   +K  +P N+ T    +++ +         +VSEGANTMD+GR V
Sbjct: 353 LREKMKSNEAASKELASKKSLPMNYYTVFYHVQEQL----PRDCFVVSEGANTMDIGRTV 408

Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPER----LVVAVEGDSGFGFSAVEVEV 471
           L    PR RLDAGT+GTMGVGLG+ IAAA+   +R     ++ VEGDS FGFS +EVE 
Sbjct: 409 LQNYLPRHRLDAGTFGTMGVGLGFAIAAAVVAKDRSPGQWIICVEGDSAFGFSGMEVET 467

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9QXE0|HACL1_MOUSE 2-hydroxyacyl-CoA lyase 1 OS=Mus musculus GN=Hacl1 PE=1 SV=2

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/476 (41%), Positives = 291/476 (61%), Gaps = 20/476 (4%)

Query: 4   SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSA 63
           +E  +    Q+ G  + A++L      +MFGVVGIPVT +A  A +LG+++I   NEQ+A
Sbjct: 7   AEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGMRNEQAA 66

Query: 64  GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
            YAASA GYLTG+PG+ L VSGPG +H L G++N  +N WP+++I GS ++     G FQ
Sbjct: 67  CYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQEAMGAFQ 126

Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH---QTIS 180
           E  QVEA + ++KF+ +   I  +P  + + +  ++ GRPG CY+D+P D +       S
Sbjct: 127 EFPQVEACRLYTKFSARPSTIELIPFIIEKAVRSSIYGRPGACYIDIPADFVTLQANVTS 186

Query: 181 VSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240
           +   E  +    S  ET        S +  A S+L++AK+PL++ GKGAAY+ AE  ++K
Sbjct: 187 IKYKECCMPPPVSMAET--------SAVCAAASVLRDAKQPLLIIGKGAAYSHAEDSIRK 238

Query: 241 LVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKW 300
           LVE   +PFLPTPMGKG++PD HP    AARS A+   DV ++ GARLNW+LHFG PP++
Sbjct: 239 LVEQCSLPFLPTPMGKGVVPDNHPNCVGAARSRALQSADVIVLFGARLNWILHFGLPPRY 298

Query: 301 SKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK 359
             DVKF+ +D+C EE+    +P + L+GD   V + + ++    P+    +  W + + +
Sbjct: 299 QADVKFIQIDICAEELGNNVRPSVILLGDIDAVSKQLLEQFDKTPWQCPPDSQWWKTLRE 358

Query: 360 KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ 419
           K K N    +   ++  +P N+ T    +++ +         +VSEGANTMD+GR +L  
Sbjct: 359 KMKSNEAISKELASQKSLPMNYYTVFYHVQEQL----PRDSFIVSEGANTMDIGRTMLQN 414

Query: 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPER----LVVAVEGDSGFGFSAVEVEV 471
             PR RLDAG++GTMGVGLG+ IAAA+   +R     V+ VEGDS FGFS +EVE 
Sbjct: 415 CLPRHRLDAGSFGTMGVGLGFAIAAALVAKDRSPGQRVICVEGDSAFGFSGMEVET 470

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q54DA9|HACL1_DICDI Probable 2-hydroxyacyl-CoA lyase 1 OS=Dictyostelium discoideum GN=hacl1 PE=3 SV=1

 Score =  357 bits (915), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/486 (41%), Positives = 276/486 (56%), Gaps = 39/486 (8%)

Query: 14  IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYL 73
           +DG  + AKS+       +FG+VG+P+T +A      GV F  F NEQS  YAAS  GYL
Sbjct: 1   MDGVEIIAKSIKNSAIEKVFGIVGVPITPIAYELQAQGVGFFGFRNEQSCSYAASIVGYL 60

Query: 74  TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKP 133
           TG PG+ +TVSGPG VH LAG+ N   N WP++++S S DQ   G+G FQE  Q E+ + 
Sbjct: 61  TGLPGLCMTVSGPGVVHALAGVLNAQSNGWPMILLSSSIDQSLVGKGGFQECKQFESAEL 120

Query: 134 FSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAES 193
           + K      +I   P+ +   +E ++S RPG  Y+ +P D++             KE+ +
Sbjct: 121 YCKKCYYLTEIDHFPEILKDAIETSLSNRPGPVYIQIPADLIKSK---------CKESPN 171

Query: 194 AKETVTQGGIVNSD-------IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246
            +E    G I           I  AV LL EAK+PL++ GKGAAY R+E EL + +E+T 
Sbjct: 172 IREAAGYGTIAIKSVVPDMKLIKDAVQLLSEAKRPLVIGGKGAAYCRSENELLEFIEATK 231

Query: 247 IPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF 306
           IPFLP+PMGKGLL D HPL   AARS A+   DV LV+GARLNW+ +FG+ P +S DVKF
Sbjct: 232 IPFLPSPMGKGLLRDDHPLVVGAARSYALKNADVVLVLGARLNWMFNFGKAPTFSTDVKF 291

Query: 307 VLVDVCKEEIELRK-----PHLGLVGDAKKVLEMINK----EIKDEPF----CLGKNHPW 353
           ++VDV + +    K     P + +VGDA+  +  + K    E  ++P      L K+   
Sbjct: 292 IIVDVDENQASKTKNPNVVPEIAIVGDARLSIAEMRKLFIGETDEQPQPPQDSLIKSMKM 351

Query: 354 VEAIWK--------KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 405
            E+ W         KTK     M      D     +      +R  + G+     I V+E
Sbjct: 352 EESWWSNLNQDIQVKTKSLATLMSEPQNNDQEYLTYHKVFNALR--VGGLFQEDTIFVNE 409

Query: 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           GANTMD+GR  + QT PR RLDAGT  TMGVG+GY +AA I  P+R VV ++GDS FGFS
Sbjct: 410 GANTMDIGRLCIPQTLPRSRLDAGTLATMGVGVGYSVAAQICFPDRSVVCIQGDSAFGFS 469

Query: 466 AVEVEV 471
           A+E+EV
Sbjct: 470 AMEMEV 475

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P40149|OXC_OXAFO Oxalyl-CoA decarboxylase OS=Oxalobacter formigenes GN=oxc PE=1 SV=1

 Score =  354 bits (909), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/474 (41%), Positives = 293/474 (61%), Gaps = 18/474 (3%)

Query: 6   LQNSQNAQI-DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAG 64
           + N  N ++ DG  +   +L +     M+GVVGIP+T+LA      G RF +F +EQ AG
Sbjct: 1   MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60

Query: 65  YAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDF 122
           YAAS  GY+ GKPG+ LTVS PG ++G+  L++   N +P++++SGS +++  D  +GD+
Sbjct: 61  YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120

Query: 123 QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVS 182
           +E+DQ+   +P  K + +   I ++P  +A+ +  AVSGRPGG Y+DLP  +  QTISV 
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVE 180

Query: 183 EAEKLL-KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKL 241
           EA KLL K  + A   +         I +A  L+K AK+P+I+ GKGAAYA+ + E++ L
Sbjct: 181 EANKLLFKPIDPAPAQIP----AEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRAL 236

Query: 242 VESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWS 301
           VE TGIPFLP  M KGLLPD HP +A A R+ A+ QCDV +++GARLNWL+  G+   W 
Sbjct: 237 VEETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWG 296

Query: 302 KDV-KFVLVDVCKEEIELRKPHLG-LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK 359
            ++ K+V +D+   E++  +P    +VGD K  + ++ K +K  P     +  W  A+  
Sbjct: 297 DELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKA---DAEWTGALKA 353

Query: 360 KTKDNVLKMEVQLAKDVVP--FNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVL 417
           K   N  K+  ++  +      N+   + ++RD +L   +P   LV+EGAN +D  R ++
Sbjct: 354 KVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFML--ANPDISLVNEGANALDNTRMIV 411

Query: 418 VQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
              +PR RLD+GTWG MG+G+GYC+AAA A   + V+AVEGDS FGFS +E+E 
Sbjct: 412 DMLKPRKRLDSGTWGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELET 464

Oxalobacter formigenes (taxid: 847)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

>sp|P0AFI0|OXC_ECOLI Probable oxalyl-CoA decarboxylase OS=Escherichia coli (strain K12) GN=oxc PE=1 SV=1

 Score =  333 bits (853), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 194/462 (41%), Positives = 287/462 (62%), Gaps = 16/462 (3%)

Query: 15  DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT 74
           DG  +  ++L       ++GVVGIPVT +A  A   G+R+I F +EQSAGYAA+A G+LT
Sbjct: 9   DGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLT 68

Query: 75  GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELDQVEAVK 132
            KPGI LTVS PG ++GL  L+N  +N +P++MISGS D+   D  +GD++ELDQ+ A K
Sbjct: 69  QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAK 128

Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
           P++K A +     ++   +A+ +  +VSGRPGG YLDLP +VL  T+   EA   + + E
Sbjct: 129 PYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVE 188

Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
           +    +         +  A+SLL +A++PLI+ GKGAAY++A+ +L++ +ES  IPFLP 
Sbjct: 189 NPSPALLP---CPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM 245

Query: 253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312
            M KG+L DTHPL+A AARS A+   DV ++VGARLNWLL  G+   W+ D +F+ +D+ 
Sbjct: 246 SMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIE 304

Query: 313 KEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHP--WVEAIWKKTKDNVLKME 369
            +EI+  +P  + +VGD    ++ +  E+K   F      P  W + +    + N  KM 
Sbjct: 305 PQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTT----PLVWRDILNIHKQQNAQKMH 360

Query: 370 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 429
            +L+ D  P N+   +  +RD +    +    LV+EGANT+D  R ++   +PR RLD G
Sbjct: 361 EKLSTDTQPLNYFNALSAVRDVLR--ENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCG 418

Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           TWG MG+G+GY I A++      VVA+EGDS FGFS +E+E 
Sbjct: 419 TWGVMGIGMGYAIGASVTSGSP-VVAIEGDSAFGFSGMEIET 459

Escherichia coli (strain K12) (taxid: 83333)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

>sp|P0AFI1|OXC_ECO57 Probable oxalyl-CoA decarboxylase OS=Escherichia coli O157:H7 GN=oxc PE=3 SV=1

 Score =  333 bits (853), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 194/462 (41%), Positives = 287/462 (62%), Gaps = 16/462 (3%)

Query: 15  DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT 74
           DG  +  ++L       ++GVVGIPVT +A  A   G+R+I F +EQSAGYAA+A G+LT
Sbjct: 9   DGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLT 68

Query: 75  GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELDQVEAVK 132
            KPGI LTVS PG ++GL  L+N  +N +P++MISGS D+   D  +GD++ELDQ+ A K
Sbjct: 69  QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAK 128

Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
           P++K A +     ++   +A+ +  +VSGRPGG YLDLP +VL  T+   EA   + + E
Sbjct: 129 PYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVE 188

Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
           +    +         +  A+SLL +A++PLI+ GKGAAY++A+ +L++ +ES  IPFLP 
Sbjct: 189 NPSPALLP---CPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM 245

Query: 253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312
            M KG+L DTHPL+A AARS A+   DV ++VGARLNWLL  G+   W+ D +F+ +D+ 
Sbjct: 246 SMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIE 304

Query: 313 KEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHP--WVEAIWKKTKDNVLKME 369
            +EI+  +P  + +VGD    ++ +  E+K   F      P  W + +    + N  KM 
Sbjct: 305 PQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTT----PLVWRDILNIHKQQNAQKMH 360

Query: 370 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 429
            +L+ D  P N+   +  +RD +    +    LV+EGANT+D  R ++   +PR RLD G
Sbjct: 361 EKLSTDTQPLNYFNALSAVRDVLR--ENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCG 418

Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           TWG MG+G+GY I A++      VVA+EGDS FGFS +E+E 
Sbjct: 419 TWGVMGIGMGYAIGASVTSGSP-VVAIEGDSAFGFSGMEIET 459

Escherichia coli O157:H7 (taxid: 83334)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9Y7M1|YGK4_SCHPO Putative 2-hydroxyacyl-CoA lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC725.04 PE=3 SV=1

 Score =  306 bits (785), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 195/467 (41%), Positives = 271/467 (58%), Gaps = 19/467 (4%)

Query: 14  IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYL 73
           I  + L AK+L       +FG+VGIPV  +       G+RF+ F NEQSA YAA+AYGYL
Sbjct: 3   ISFSELVAKTLLDLEVKVVFGIVGIPVIEICEAIQASGIRFVGFRNEQSAAYAATAYGYL 62

Query: 74  TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKP 133
           T +PG+ + V GPG VH +AG+ N   N WP+++++GS +      G FQELDQV  + P
Sbjct: 63  TQRPGVCVVVGGPGVVHAMAGVFNSKTNRWPLLLLAGSSETFQQNCGAFQELDQVSYLSP 122

Query: 134 FSKFAVKAKDITEVPKCVAQVLERA----VSGRPGGCYLDLPTDVLHQTISVSEAEKLLK 189
            +K AV+       PK V   + RA    ++G PG CY+DLP + +  T+     + L  
Sbjct: 123 HTKLAVRPPS----PKMVVDSIRRAYRVSMTGTPGTCYVDLPANYIESTVDDFPKDPLPP 178

Query: 190 EAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
              S K          + + KA   LK AK PL+V GKGAAYA AE +L + VE TGIPF
Sbjct: 179 IPSSPKCAPDP-----TQLQKAAYYLKNAKAPLLVVGKGAAYACAEKQLLEFVEHTGIPF 233

Query: 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV 309
           LP+PMGKGLLP++HPL  ++ARS A+   DV L+ GARLNW+  +G PPKWS + KF+ +
Sbjct: 234 LPSPMGKGLLPESHPLNVSSARSAALRNADVVLLAGARLNWIFQYGLPPKWSPNAKFIQI 293

Query: 310 DVCKEEIELRKPHLGLV--GDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLK 367
           D   E +      L L    D    ++ + K ++   + +G + P++  +  +T+    K
Sbjct: 294 DTNAETLGNNAADLDLAIWADVGLTIDCLFKLVQTWKYSVGISTPYLRTL-NETRSKNEK 352

Query: 368 MEVQLAKDVVPFNFMTPMRIIRDAI--LGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRC 424
             ++  K  +P      + ++ + +  L + S   I  VSEGANTMD GR +L  T PR 
Sbjct: 353 KALESRKSSIPLQMNYALYVVNEELQSLSLKSKRNITWVSEGANTMDRGRQLLEVTHPRG 412

Query: 425 RLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           RLDAGT  TMGVG+GY IA+A A     +V VEGDS FGFSA+E+E 
Sbjct: 413 RLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGDSAFGFSAMELET 459

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P39994|YEC0_YEAST Putative 2-hydroxyacyl-CoA lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEL020C PE=1 SV=1

 Score =  288 bits (738), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 182/467 (38%), Positives = 256/467 (54%), Gaps = 26/467 (5%)

Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGIL 80
           A+ L  +G   +FG+VGIP+  LA+  V  G++FI   NEQ+A YAASAYGY++ KPG+L
Sbjct: 10  AQLLQKYGIDTVFGIVGIPIVQLADTMVANGIKFIPCRNEQAASYAASAYGYISDKPGVL 69

Query: 81  LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK 140
           L V GPG +H LAG+ N M N WP+++I+GS  Q D  +G FQELDQV  + PF KF  K
Sbjct: 70  LIVGGPGLIHALAGIYNSMSNRWPLLVIAGSSSQSDIHKGGFQELDQVSLLSPFLKFTGK 129

Query: 141 AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKE---- 196
                 +     + L   + G  G  Y+D+P D +       E EK L+  +        
Sbjct: 130 LTP-DNIDMITQKALNYCIQGTAGVSYIDVPADFI-------EYEKPLEGNDRTGNELPM 181

Query: 197 --TVTQGGIVNSDIDKAVSLLKEAKKP--LIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
             T    G   S I K V L+ + K    LIV GKGA   +   E+++LV +  +PFLPT
Sbjct: 182 ILTPNICGPDPSKIKKVVQLILQHKNKNILIVIGKGA--VKNSHEIRRLVNTFNLPFLPT 239

Query: 253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312
           PM KG++PD+ PL  ++ARS A+   D+ LV+GARLNW+LHFG  PKW+ +  F+  D  
Sbjct: 240 PMAKGIVPDSSPLNVSSARSQALKIADIVLVLGARLNWILHFGTSPKWNSESIFIQFDSN 299

Query: 313 KEEIELRK----PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKM 368
            E +          L + GD    +  + +E+  +  C  K     + I +K + N  ++
Sbjct: 300 PETLGDNNVSPGADLSIWGDIGLSVTALVEELTRQDSCW-KYSGVKQEIREKIQLNQTRL 358

Query: 369 EVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDA 428
             +        N+      +R  I    +   ILV+EGANTMD+ R       PR RLDA
Sbjct: 359 LRKEKTRGAQLNYNQVYGTLRPLIDDYRT---ILVTEGANTMDIARISFPTDAPRRRLDA 415

Query: 429 GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSC 475
           GT  TMG+GLGY +A   + PE  VV ++GDS FGFSA+E+E  + C
Sbjct: 416 GTNATMGIGLGYALACKASHPELDVVLIQGDSAFGFSAMEIETAVRC 462

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
449529020	578	PREDICTED: 2-hydroxyacyl-CoA lyase-like	0.964	0.804	0.809	0.0
255574292	574	2-hydroxyphytanoyl-CoA lyase, putative [	0.975	0.818	0.808	0.0
225462809	575	PREDICTED: 2-hydroxyacyl-CoA lyase [Viti	0.977	0.819	0.783	0.0
449467435	574	PREDICTED: LOW QUALITY PROTEIN: 2-hydrox	0.956	0.803	0.800	0.0
211906508	565	pyruvate decarboxylase [Gossypium hirsut	0.948	0.808	0.835	0.0
147782269	575	hypothetical protein VITISV_044048 [Viti	0.977	0.819	0.777	0.0
356553206	566	PREDICTED: 2-hydroxyacyl-CoA lyase-like	0.950	0.809	0.804	0.0
224079379	577	predicted protein [Populus trichocarpa]	0.977	0.816	0.793	0.0
356500972	566	PREDICTED: 2-hydroxyacyl-CoA lyase-like	0.950	0.809	0.798	0.0
429840542	588	pyruvate decarboxylase 3, partial [Diosp	0.962	0.789	0.782	0.0

>gi|449529020|ref|XP_004171499.1| PREDICTED: 2-hydroxyacyl-CoA lyase-like [Cucumis sativus]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/467 (80%), Positives = 417/467 (89%), Gaps = 2/467 (0%)

Query: 6   LQNSQNAQ--IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSA 63
           LQN    Q  IDGN LAA +L+  G   MFGVVGIPVTSLA RAV LG+RFIAFHNEQSA
Sbjct: 8   LQNDLRFQGPIDGNVLAAMALARCGVDRMFGVVGIPVTSLATRAVSLGIRFIAFHNEQSA 67

Query: 64  GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
           GYAASAYGYLTG+PG+LLTVSGPGCVHGLAG+SN M+N WP+VMISGSCDQ+DFGRGDFQ
Sbjct: 68  GYAASAYGYLTGRPGVLLTVSGPGCVHGLAGVSNAMVNAWPLVMISGSCDQRDFGRGDFQ 127

Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
           ELDQVEAVKPFSK +VKA DI+E+P CVA+VL  AVSGRPGGCY DLP+DVLHQTIS SE
Sbjct: 128 ELDQVEAVKPFSKISVKATDISEIPNCVARVLNSAVSGRPGGCYFDLPSDVLHQTISESE 187

Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
           AE+LL  AE          + NS I++A+SLLK A++PLIVFGKGAA ARAEG LKKLVE
Sbjct: 188 AERLLVAAEEFARREVIPRVPNSQIEEAISLLKHAERPLIVFGKGAALARAEGPLKKLVE 247

Query: 244 STGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD 303
           +TGIPFLPTPMGKGLLPDTH LAATAARSLAIG+CDVALVVGARLNWLLHFGEPPKWSKD
Sbjct: 248 TTGIPFLPTPMGKGLLPDTHELAATAARSLAIGKCDVALVVGARLNWLLHFGEPPKWSKD 307

Query: 304 VKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKD 363
           VKF+LVD+CKEE+ELR PHLGL+GDAK+VLE INKEIKD+PFCLGK+HPWVEAI +K KD
Sbjct: 308 VKFILVDICKEEVELRNPHLGLIGDAKEVLESINKEIKDDPFCLGKSHPWVEAISQKAKD 367

Query: 364 NVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPR 423
           NV KME+QLA+DVVPFNF+TPMRIIRDAIL +GSPAPILVSEGANTMDVGR+VLVQTEPR
Sbjct: 368 NVAKMELQLARDVVPFNFLTPMRIIRDAILALGSPAPILVSEGANTMDVGRSVLVQTEPR 427

Query: 424 CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
            RLDAGTWGTMGVGLGYCIAAA+A P+RLVVAVEGDSGFGFSA+EVE
Sbjct: 428 TRLDAGTWGTMGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVE 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574292|ref|XP_002528060.1| 2-hydroxyphytanoyl-CoA lyase, putative [Ricinus communis] gi|223532521|gb|EEF34310.1| 2-hydroxyphytanoyl-CoA lyase, putative [Ricinus communis]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/470 (80%), Positives = 422/470 (89%)

Query: 1   MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNE 60
           MA S  QN+  ++IDGN LAAKSL+ +G THMFGVVGIPVTSLANRAV LG+RF+AFHNE
Sbjct: 1   MADSNPQNAPESRIDGNILAAKSLARYGVTHMFGVVGIPVTSLANRAVSLGIRFVAFHNE 60

Query: 61  QSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG 120
           QSAGYAASAYGYLTGKPG+LLTVSGPGCVHGLAGLSN M+NTWP+VMISGSCDQ D G+G
Sbjct: 61  QSAGYAASAYGYLTGKPGLLLTVSGPGCVHGLAGLSNAMVNTWPMVMISGSCDQNDVGKG 120

Query: 121 DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS 180
           DFQELDQ+EAVKPF KF+VK KDI E+P CV QVL+RAVSGRPGGCYLD+P+DVLHQT+ 
Sbjct: 121 DFQELDQIEAVKPFVKFSVKVKDIKEIPNCVFQVLDRAVSGRPGGCYLDIPSDVLHQTVD 180

Query: 181 VSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240
            SEAE LL +A   K  V +    +SD ++A  LL+ A++PLIVFGKGAAYARAE ELKK
Sbjct: 181 ESEAESLLSDAFKPKSIVNEFNTKSSDFERAAELLRTAERPLIVFGKGAAYARAESELKK 240

Query: 241 LVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKW 300
           LVE TGIPFLPTPMGKG+LPD H LAA+AARSLAIG+CDVALVVGARLNWLLHFG+PPKW
Sbjct: 241 LVELTGIPFLPTPMGKGILPDNHELAASAARSLAIGKCDVALVVGARLNWLLHFGQPPKW 300

Query: 301 SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKK 360
           SKDVKF+LVDVC++EIELRKPHLGLVGDAKKVLE+INKEIKD+PFCL KNHPWVEAI  K
Sbjct: 301 SKDVKFILVDVCEDEIELRKPHLGLVGDAKKVLEIINKEIKDDPFCLAKNHPWVEAISSK 360

Query: 361 TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT 420
            K+NV +ME QLAK+VVPFNF+TPMRIIRDAILGVGSPAPI+VSEGANTMDVGRAVLVQT
Sbjct: 361 VKENVSRMESQLAKNVVPFNFLTPMRIIRDAILGVGSPAPIVVSEGANTMDVGRAVLVQT 420

Query: 421 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
           EPR RLDAGTWGTMGVGLGYCIAAA+A P RLVVAVEGDSGFGFSA+EVE
Sbjct: 421 EPRTRLDAGTWGTMGVGLGYCIAAAVAEPNRLVVAVEGDSGFGFSAMEVE 470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462809|ref|XP_002266004.1| PREDICTED: 2-hydroxyacyl-CoA lyase [Vitis vinifera]

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/472 (78%), Positives = 419/472 (88%), Gaps = 1/472 (0%)

Query: 1   MAGSELQ-NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHN 59
           MA S+ + +   A +DGN LAAKS +  G THMFGVVGIPVTS ANRAV +G+RF+AFHN
Sbjct: 1   MADSDCKTHDSQALVDGNLLAAKSFAAAGITHMFGVVGIPVTSFANRAVSMGIRFLAFHN 60

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
           EQSAGYAASAYGYLTGKPG+LLTVSGPGCVHGLAGLSN  +N WP+V+ISGSCDQ DFGR
Sbjct: 61  EQSAGYAASAYGYLTGKPGLLLTVSGPGCVHGLAGLSNAAVNAWPMVLISGSCDQADFGR 120

Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
           GDFQELDQV  V+PFSKF+ KA DI+++P CV +VL++A+SGRPGGCYLDLPTDVLHQT+
Sbjct: 121 GDFQELDQVAVVRPFSKFSAKATDISQIPNCVFKVLDQALSGRPGGCYLDLPTDVLHQTV 180

Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
           S SEAE LL  AE ++       + +S I+KAVSLL+ A++PLIVFGKGAA+ARAE  +K
Sbjct: 181 SQSEAETLLAAAEKSRAKPQFPSVESSLIEKAVSLLRHAERPLIVFGKGAAFARAENSIK 240

Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPK 299
           KLVESTGIPFLPTPMGKGLLPD H LAATAARSLAIG+CDVALVVGARLNWLLHFGEPPK
Sbjct: 241 KLVESTGIPFLPTPMGKGLLPDAHELAATAARSLAIGKCDVALVVGARLNWLLHFGEPPK 300

Query: 300 WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK 359
           WSKDVKF+LVDVC+EEI+LRKP LGL GDAK+VL+MI+ EIKD+PFCLGK+HPWVEAI K
Sbjct: 301 WSKDVKFILVDVCEEEIQLRKPCLGLAGDAKQVLDMISLEIKDDPFCLGKSHPWVEAISK 360

Query: 360 KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ 419
           K +DNV +ME QLAKDVVPFNF+TPMRIIRDAILGVGSPAPILVSEGANTMDVGR+VL+Q
Sbjct: 361 KARDNVSRMEAQLAKDVVPFNFLTPMRIIRDAILGVGSPAPILVSEGANTMDVGRSVLIQ 420

Query: 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           TEPR RLDAGTWGTMGVGLGYCIAAA+A P+RLVVAVEGDSGFGFSA+EVE 
Sbjct: 421 TEPRTRLDAGTWGTMGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVET 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467435|ref|XP_004151428.1| PREDICTED: LOW QUALITY PROTEIN: 2-hydroxyacyl-CoA lyase-like [Cucumis sativus]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/467 (80%), Positives = 412/467 (88%), Gaps = 6/467 (1%)

Query: 6   LQNSQNAQ--IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSA 63
           LQN    Q  IDGN LAA +L+  G   MFGVVGIPVTSLA RAV LG+RFIAFHNEQSA
Sbjct: 8   LQNDLRFQGPIDGNVLAAMALARCGVDRMFGVVGIPVTSLATRAVSLGIRFIAFHNEQSA 67

Query: 64  GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
           GYAASAYGYLTG+PG+LLTVSGPGCVHGLAG+SN M+N WP+VMISGSCDQ+DFGRGDFQ
Sbjct: 68  GYAASAYGYLTGRPGVLLTVSGPGCVHGLAGVSNAMVNAWPLVMISGSCDQRDFGRGDFQ 127

Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
           ELDQVEAVKPFSK +VKA DI+E+P CVA+VL  AVSGRPGGCY DLP+DVLHQTIS SE
Sbjct: 128 ELDQVEAVKPFSKISVKATDISEIPNCVARVLNSAVSGRPGGCYFDLPSDVLHQTISESE 187

Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
           AE+LL  AE          + NS I++A+SLLK A++PLIVFGKGAA ARAEG LKKLVE
Sbjct: 188 AERLLVAAEEFARREVIPRVPNSQIEEAISLLKHAERPLIVFGKGAALARAEGPLKKLVE 247

Query: 244 STGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD 303
           +TGIPFLPTPMGKGLLPD  P    AARSLAIG+CDVALVVGARLNWLLHFGEPPKWSKD
Sbjct: 248 TTGIPFLPTPMGKGLLPDXPP----AARSLAIGKCDVALVVGARLNWLLHFGEPPKWSKD 303

Query: 304 VKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKD 363
           VKF+LVD+CKEE+ELR PHLGL+GDAK+VLE INKEIKD+PFCLGK+HPWVEAI +K KD
Sbjct: 304 VKFILVDICKEEVELRNPHLGLIGDAKEVLESINKEIKDDPFCLGKSHPWVEAISQKAKD 363

Query: 364 NVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPR 423
           NV KMEVQLA+DVVPFNF+TPMRIIRDAIL +GSPAPILVSEGANTMDVGR+VLVQTEPR
Sbjct: 364 NVAKMEVQLARDVVPFNFLTPMRIIRDAILALGSPAPILVSEGANTMDVGRSVLVQTEPR 423

Query: 424 CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
            RLDAGTWGTMGVGLGYCIAAA+A P+RLVVAVEGDSGFGFSA+EVE
Sbjct: 424 TRLDAGTWGTMGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVE 470

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211906508|gb|ACJ11747.1| pyruvate decarboxylase [Gossypium hirsutum]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/457 (83%), Positives = 417/457 (91%)

Query: 14  IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYL 73
           +DGN LAAKS + FG THMFGVVGIPVT LANRAVQLG+RFIAFHNEQSAGYAASAYGYL
Sbjct: 5   LDGNVLAAKSFARFGVTHMFGVVGIPVTGLANRAVQLGIRFIAFHNEQSAGYAASAYGYL 64

Query: 74  TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKP 133
           TG+PG+LLTVSGPGCVHGLAGLSN MINTWP+VMISGS DQKD GRGDFQELDQ+EAVKP
Sbjct: 65  TGRPGLLLTVSGPGCVHGLAGLSNAMINTWPMVMISGSPDQKDSGRGDFQELDQIEAVKP 124

Query: 134 FSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAES 193
           FSKF+VKAKDI E+P CVA+VL+ AVSGRPGGCYLDLPTDVLHQ I+ SEAEKLL E E 
Sbjct: 125 FSKFSVKAKDIKEIPDCVARVLDHAVSGRPGGCYLDLPTDVLHQMITESEAEKLLTEVEK 184

Query: 194 AKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253
            +         +S+I KAVS+L++A++PLIVFGKGAAYARAEGELKKLVE TGIPFLPTP
Sbjct: 185 GRVFEATKAPPSSEIAKAVSVLRKAERPLIVFGKGAAYARAEGELKKLVERTGIPFLPTP 244

Query: 254 MGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCK 313
           MGKGL+ D H LAA+AARSLAIG+CDVALVVGARLNWLLHFGE PKW KDVKF+LVDV +
Sbjct: 245 MGKGLVNDDHELAASAARSLAIGKCDVALVVGARLNWLLHFGESPKWDKDVKFILVDVSE 304

Query: 314 EEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLA 373
           EEI+LRKPHLGLVGDAKKVLEMINKEIKD+PFCLGK+HPWVEAI KK KDNV KME QLA
Sbjct: 305 EEIKLRKPHLGLVGDAKKVLEMINKEIKDDPFCLGKSHPWVEAISKKVKDNVSKMESQLA 364

Query: 374 KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGT 433
           KDVVPFNF+TPMRIIRDAILGVGSPAP++VSEGANTMDVGR+VLVQTEPR RLDAGTWGT
Sbjct: 365 KDVVPFNFLTPMRIIRDAILGVGSPAPVVVSEGANTMDVGRSVLVQTEPRTRLDAGTWGT 424

Query: 434 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
           MGVGLGYCIAAA+A PE+LVVAVEGDSGFGFSA+EVE
Sbjct: 425 MGVGLGYCIAAAVANPEQLVVAVEGDSGFGFSAMEVE 461

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782269|emb|CAN69570.1| hypothetical protein VITISV_044048 [Vitis vinifera]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/472 (77%), Positives = 416/472 (88%), Gaps = 1/472 (0%)

Query: 1   MAGSELQ-NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHN 59
           MA S+ + +     +DGN LAAKS +  G THMFGVVGIPVTS ANRAV +G+RF+AFHN
Sbjct: 1   MADSDCKTHDSQXLVDGNLLAAKSFAAAGITHMFGVVGIPVTSFANRAVSMGIRFLAFHN 60

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
           EQSAGYAASAYGYLTGKPG+LLTVSGPGCVHGLAGLSN  +N WP+V+ISGSCDQ DFGR
Sbjct: 61  EQSAGYAASAYGYLTGKPGLLLTVSGPGCVHGLAGLSNAAVNAWPMVLISGSCDQADFGR 120

Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
           GDFQELDQ   V+PFSKF+ KA DI+++P CV +VL++A+SGRPGGCYLDLPTDVLHQT+
Sbjct: 121 GDFQELDQXAVVRPFSKFSAKATDISQIPNCVFKVLDQALSGRPGGCYLDLPTDVLHQTV 180

Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
           S SEAE LL  AE ++       + +S I+KAVSLL+ A++PLIVFGKGAA+ARAE  +K
Sbjct: 181 SQSEAETLLAAAEKSRAKPQFPSVESSLIEKAVSLLRHAERPLIVFGKGAAFARAENSIK 240

Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPK 299
           KLVESTGIPFLPTPMGKGLLPD H LAATAARSLAIG+CDVALVVGARLNWLLHFGEPPK
Sbjct: 241 KLVESTGIPFLPTPMGKGLLPDAHELAATAARSLAIGKCDVALVVGARLNWLLHFGEPPK 300

Query: 300 WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK 359
           WSKDVKF+LVDVC+EEI+LRKP LGL GDAK+VL+MI+ EIKD+PFCLGK+HPWVEAI K
Sbjct: 301 WSKDVKFILVDVCEEEIQLRKPCLGLAGDAKQVLDMISLEIKDDPFCLGKSHPWVEAISK 360

Query: 360 KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ 419
           K +DNV +ME QLAKDVVPFNF+TPMRIIRDAILGVGS APILVSEGANTMDVGR+VL+Q
Sbjct: 361 KARDNVSRMEAQLAKDVVPFNFLTPMRIIRDAILGVGSXAPILVSEGANTMDVGRSVLIQ 420

Query: 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           TEPR RLDAGTWGTMGVGLGYCIAAA+A P+RLVVAVEGDSGFGFSA+EVE 
Sbjct: 421 TEPRTRLDAGTWGTMGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVET 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553206|ref|XP_003544949.1| PREDICTED: 2-hydroxyacyl-CoA lyase-like [Glycine max]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/461 (80%), Positives = 407/461 (88%), Gaps = 3/461 (0%)

Query: 13  QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGY 72
           +IDGN LAAKSL  FG  HMFGVVGIPVTSLANRAV LGVRFIAFHNEQSAGYAASAYGY
Sbjct: 2   EIDGNVLAAKSLVHFGVQHMFGVVGIPVTSLANRAVSLGVRFIAFHNEQSAGYAASAYGY 61

Query: 73  LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
           LTG+PG+ LTVSGPGCVHGLAGLSN  +NTWP VMISGSCDQ D GRGDFQEL+Q+EA K
Sbjct: 62  LTGRPGVFLTVSGPGCVHGLAGLSNASVNTWPTVMISGSCDQNDVGRGDFQELNQIEATK 121

Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
           PF+K +VKA  ITE+P  VAQVL+ A S RPGGCYLDLPTDVLHQ IS SEAEKLL EA+
Sbjct: 122 PFTKLSVKASHITEIPARVAQVLDWAQSARPGGCYLDLPTDVLHQKISESEAEKLLTEAD 181

Query: 193 ---SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
              S  E   +  + NS I++AVSLL+ A++PLIVFGKGAAYARAE  L KLV STGIPF
Sbjct: 182 KNRSISEPKIERPLSNSKIEEAVSLLRHAERPLIVFGKGAAYARAEHVLTKLVNSTGIPF 241

Query: 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV 309
           LPTPMGKG+LPDTH LAATAARSLAIG+CDVALVVGARLNWLLHFGEPPKWSKDVKF+LV
Sbjct: 242 LPTPMGKGILPDTHALAATAARSLAIGKCDVALVVGARLNWLLHFGEPPKWSKDVKFILV 301

Query: 310 DVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKME 369
           DV +EEIELRKPHLGL+GDAK V+E++NKEIKD+PFCLG  HPWVEAI  K K+NV +ME
Sbjct: 302 DVSEEEIELRKPHLGLIGDAKHVIEVLNKEIKDDPFCLGSTHPWVEAISNKAKENVARME 361

Query: 370 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 429
           VQL KDVVPFNF+TPMRIIRDAI G+GSPAP++VSEGANTMDVGR+VLVQTEPR RLDAG
Sbjct: 362 VQLKKDVVPFNFLTPMRIIRDAIAGLGSPAPVVVSEGANTMDVGRSVLVQTEPRTRLDAG 421

Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
           TWGTMGVGLGYCIAAA+A PERLVVAVEGDSGFGFSA+EVE
Sbjct: 422 TWGTMGVGLGYCIAAAVASPERLVVAVEGDSGFGFSAMEVE 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079379|ref|XP_002305843.1| predicted protein [Populus trichocarpa] gi|222848807|gb|EEE86354.1| predicted protein [Populus trichocarpa]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/474 (79%), Positives = 415/474 (87%), Gaps = 3/474 (0%)

Query: 1   MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNE 60
           MA S  Q +    IDGNTLAAKSL  +G THMFGVVGIPVTS ANRAV  G+RFIAFHNE
Sbjct: 1   MAESNSQTTSQTLIDGNTLAAKSLVAYGITHMFGVVGIPVTSFANRAVAAGIRFIAFHNE 60

Query: 61  QSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG 120
           QSAGYAASAYGYLTG+PGILLTVSGPGCVHGLAGLSN MINTWP+V+ISGSCDQ D GRG
Sbjct: 61  QSAGYAASAYGYLTGRPGILLTVSGPGCVHGLAGLSNAMINTWPMVLISGSCDQNDVGRG 120

Query: 121 DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS 180
           DFQEL+Q+EA KPFSK   KAKDI E+PKC  + L+ AV GRPGGCYLDLPTDVLHQTIS
Sbjct: 121 DFQELNQIEAAKPFSKHLGKAKDIKEIPKCFFEALDSAVLGRPGGCYLDLPTDVLHQTIS 180

Query: 181 VSEAEKLLKEAESAKETVTQGGIVNS---DIDKAVSLLKEAKKPLIVFGKGAAYARAEGE 237
            SEA+ L+K A    E       + +   ++++AV LL+ A++PLIVFGKGAAYARAE E
Sbjct: 181 ESEADSLIKSAADVSEIEKGAKKITTASLEVERAVDLLRNAERPLIVFGKGAAYARAENE 240

Query: 238 LKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP 297
           LK+LVESTGIPFLPTPMGKGLLPDTH LAA+AARSLAIG+CDVALVVGARLNWLLHFGEP
Sbjct: 241 LKRLVESTGIPFLPTPMGKGLLPDTHELAASAARSLAIGKCDVALVVGARLNWLLHFGEP 300

Query: 298 PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI 357
           PKWSKDVKF+LVDV +EEIELRKPHLGLVGDAKKVLE++NKEIK++PFCLGKNHPW+EAI
Sbjct: 301 PKWSKDVKFILVDVSEEEIELRKPHLGLVGDAKKVLELVNKEIKEDPFCLGKNHPWLEAI 360

Query: 358 WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVL 417
            KK +DNV +ME QLAKDVVPFNF+TPMRIIR+AIL VGSPAP+LVSEGANTMDVGRAVL
Sbjct: 361 SKKARDNVSRMEAQLAKDVVPFNFLTPMRIIRNAILEVGSPAPVLVSEGANTMDVGRAVL 420

Query: 418 VQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           VQTEPR RLDAGTWGTMGVGLGYCIAAA+A P RLVVAVEGDSGFGFSA+EVE 
Sbjct: 421 VQTEPRTRLDAGTWGTMGVGLGYCIAAAVAEPHRLVVAVEGDSGFGFSAMEVET 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500972|ref|XP_003519304.1| PREDICTED: 2-hydroxyacyl-CoA lyase-like [Glycine max]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/461 (79%), Positives = 404/461 (87%), Gaps = 3/461 (0%)

Query: 13  QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGY 72
           +IDGN LAAKSL  FG  HMFGVVGIPVTSLANRAV LGVRFIAFHNEQSAGYAASAYGY
Sbjct: 2   EIDGNVLAAKSLVRFGVQHMFGVVGIPVTSLANRAVSLGVRFIAFHNEQSAGYAASAYGY 61

Query: 73  LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
           LTG+PG+ LTVSGPGCVHGLAGLSN  +NTWP VMISGSCDQ D GRGDFQEL+Q+EA K
Sbjct: 62  LTGRPGVFLTVSGPGCVHGLAGLSNASVNTWPTVMISGSCDQNDVGRGDFQELNQIEATK 121

Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
           PF+K +VKA  I+E+P  VAQVL+ A S RPGGCYLDLPTDVLHQ IS SEAEKLL EAE
Sbjct: 122 PFTKLSVKASHISEIPARVAQVLDWAQSARPGGCYLDLPTDVLHQKISESEAEKLLSEAE 181

Query: 193 SAKETVT---QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
           + +       +  + NS I++AVSLL+ A++PLIVFGKGAAYARAE  L KLV STGIPF
Sbjct: 182 NNRSISNPKPEPPLFNSKIEQAVSLLRHAERPLIVFGKGAAYARAEHVLTKLVNSTGIPF 241

Query: 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV 309
           LPTPMGKG+LPD H LAATAARSLAIG+CDVALVVGARLNWLLHFGEPPKWSKDVKF+LV
Sbjct: 242 LPTPMGKGILPDNHELAATAARSLAIGKCDVALVVGARLNWLLHFGEPPKWSKDVKFILV 301

Query: 310 DVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKME 369
           DV +EEIELRKPHLGL+GDAK V+E++NKEIKD+PFCLG  HPWVEAI  K KDNV KME
Sbjct: 302 DVSEEEIELRKPHLGLIGDAKHVIEVLNKEIKDDPFCLGSTHPWVEAISNKAKDNVAKME 361

Query: 370 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 429
           VQL KD+VPFNF+TPMRIIRDAI  +GSPAPI+VSEGANTMDVGR+VLVQTEPR RLDAG
Sbjct: 362 VQLKKDIVPFNFLTPMRIIRDAIAVLGSPAPIVVSEGANTMDVGRSVLVQTEPRTRLDAG 421

Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
           TWGTMGVGLGYCIAAA+A P RLVVAVEGDSGFGFSA+EVE
Sbjct: 422 TWGTMGVGLGYCIAAAVAEPGRLVVAVEGDSGFGFSAMEVE 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429840542|gb|AGA15798.1| pyruvate decarboxylase 3, partial [Diospyros kaki]

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/465 (78%), Positives = 410/465 (88%), Gaps = 1/465 (0%)

Query: 8   NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAA 67
           ++ +  +DGN + AK+L+  G   MFGVVGIPVTS+A RAV +GVRFIAFHNEQSAGYAA
Sbjct: 21  DNSSPLLDGNAMVAKALARAGVDRMFGVVGIPVTSVATRAVAMGVRFIAFHNEQSAGYAA 80

Query: 68  SAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQ 127
           SAYGYLTG+PG+LLTVSGPGCVHGLAGLSN  +N WP+V+ISGSCDQKDFGRGDFQELDQ
Sbjct: 81  SAYGYLTGRPGVLLTVSGPGCVHGLAGLSNAAVNAWPMVLISGSCDQKDFGRGDFQELDQ 140

Query: 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKL 187
           +  VKPFSKF+ K   I E+P CV QVL  AVSGRPGGCYLDLP+DVLH+TI+ SEAEKL
Sbjct: 141 IATVKPFSKFSAKPTSIKEIPNCVFQVLGHAVSGRPGGCYLDLPSDVLHETITESEAEKL 200

Query: 188 LKEAESAKETVTQGGIVN-SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246
           L EAES        G V  S+I+ AVSLL+ A++PLIVFGKGAA+ARAE  L+K VESTG
Sbjct: 201 LLEAESGWPQPNAIGTVGCSEIEAAVSLLRHAERPLIVFGKGAAFARAENGLRKFVESTG 260

Query: 247 IPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF 306
           IPFLPTPMGKGLLPDTH LAATAARSLAIG+CDVALVVGARLNWLLHFGEPPKWSKDVKF
Sbjct: 261 IPFLPTPMGKGLLPDTHELAATAARSLAIGKCDVALVVGARLNWLLHFGEPPKWSKDVKF 320

Query: 307 VLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL 366
           +LVD+ KEEIE+R P LGLVGDA K++EMINKEIK++PFCLGK+HPWVEAI KK+K+NV 
Sbjct: 321 ILVDISKEEIEMRNPCLGLVGDAAKIMEMINKEIKNDPFCLGKSHPWVEAISKKSKENVS 380

Query: 367 KMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRL 426
           +ME QLAKDVVPFNF+TPMRIIRDA+LGVGSPAPILVSEGANTMDVGR+VL+QTEPR RL
Sbjct: 381 RMEAQLAKDVVPFNFLTPMRIIRDAVLGVGSPAPILVSEGANTMDVGRSVLIQTEPRTRL 440

Query: 427 DAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           DAGTWGTMGVGLGYCIAAA+A P+RLVVAVEGDSGFGFSA+EVE 
Sbjct: 441 DAGTWGTMGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVET 485

Source: Diospyros kaki

Species: Diospyros kaki

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
TAIR|locus:2167205	572	AT5G17380 [Arabidopsis thalian	0.948	0.798	0.746	2e-184
UNIPROTKB|F1NYG7	574	HACL1 "Uncharacterized protein	0.919	0.771	0.411	4.2e-95
UNIPROTKB|F1MVP8	581	HACL1 "Uncharacterized protein	0.943	0.783	0.405	7.8e-94
RGD|619849	581	Hacl1 "2-hydroxyacyl-CoA lyase	0.941	0.781	0.405	1e-93
UNIPROTKB|Q9UJ83	578	HACL1 "2-hydroxyacyl-CoA lyase	0.954	0.795	0.397	3.4e-93
UNIPROTKB|E2R9K1	581	HACL1 "Uncharacterized protein	0.952	0.790	0.391	2.4e-92
UNIPROTKB|J9NS82	763	HACL1 "Uncharacterized protein	0.952	0.601	0.391	2.4e-92
MGI|MGI:1929657	581	Hacl1 "2-hydroxyacyl-CoA lyase	0.946	0.784	0.396	8.1e-92
ASPGD|ASPL0000045214	605	AN10214 [Emericella nidulans (	0.937	0.747	0.407	7.3e-91
ZFIN|ZDB-GENE-040426-2058	568	hacl1 "2-hydroxyacyl-CoA lyase	0.929	0.788	0.407	1.5e-90

TAIR|locus:2167205 AT5G17380 [Arabidopsis thaliana (taxid:3702)]

 Score = 1789 (634.8 bits), Expect = 2.0e-184, P = 2.0e-184
 Identities = 341/457 (74%), Positives = 386/457 (84%)

Query:    14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXXL 73
             IDGN L AKSLS  G THMFGVVGIPVTSLA+RA+ LG+RFIAFHNEQ           L
Sbjct:    12 IDGNVLVAKSLSHLGVTHMFGVVGIPVTSLASRAMALGIRFIAFHNEQSAGYAASAYGYL 71

Query:    74 TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKP 133
             TGKPGILLTVSGPGCVHGLAGLSN  +NTWP+VMISGSCDQ+D GRGDFQELDQ+EAVK 
Sbjct:    72 TGKPGILLTVSGPGCVHGLAGLSNAWVNTWPMVMISGSCDQRDVGRGDFQELDQIEAVKA 131

Query:   134 FSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXX 193
             FSK + KAKD+ E+P CV++VL+RAVSGRPGGCYLD+PTDVL Q IS             
Sbjct:   132 FSKLSEKAKDVREIPDCVSRVLDRAVSGRPGGCYLDIPTDVLRQKISESEADKLVDEVER 191

Query:   194 XXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253
                     G + S+I+ AVSLL++A++PLIVFGKGAAY+RAE ELKKLVE TGIPFLPTP
Sbjct:   192 SRKEEPIRGSLRSEIESAVSLLRKAERPLIVFGKGAAYSRAEDELKKLVEITGIPFLPTP 251

Query:   254 MGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCK 313
             MGKGLLPDTH  +ATAARSLAIG+CDVALVVGARLNWLLHFGE PKW KDVKF+LVDV +
Sbjct:   252 MGKGLLPDTHEFSATAARSLAIGKCDVALVVGARLNWLLHFGESPKWDKDVKFILVDVSE 311

Query:   314 EEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLA 373
             EEIELRKPHLG+VGDAK V+ ++N+EIKD+PFCLGK++ WVE+I KK K+N  KME+QLA
Sbjct:   312 EEIELRKPHLGIVGDAKTVIGLLNREIKDDPFCLGKSNSWVESISKKAKENGEKMEIQLA 371

Query:   374 KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGT 433
             KDVVPFNF+TPMRIIRDAIL V  P+P++VSEGANTMDVGR+VLVQ EPR RLDAGTWGT
Sbjct:   372 KDVVPFNFLTPMRIIRDAILAVEGPSPVVVSEGANTMDVGRSVLVQKEPRTRLDAGTWGT 431

Query:   434 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
             MGVGLGYCIAAA+A P+RLVVAVEGDSGFGFSA+EVE
Sbjct:   432 MGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVE 468

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004737 "pyruvate decarboxylase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|F1NYG7 HACL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 193/469 (41%), Positives = 283/469 (60%)

Query:    13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXX 72
             ++ G  L A++L      +MFGVVGIP+T +A  A   G+++I   NEQ           
Sbjct:     9 ELSGAQLIAEALRAQNIEYMFGVVGIPITEVAVAAQAAGIKYIGMRNEQAACYAASAVGY 68

Query:    73 LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
             LTG+PG+ L VSGPG +H L G++N  +N WP+++I GS D+     G FQE  QVEA +
Sbjct:    69 LTGRPGVCLVVSGPGFLHTLGGMANANMNCWPLIVIGGSSDRNQETMGAFQEFPQVEAAR 128

Query:   133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXX 192
              ++K +V+   +  +P  + + +  ++ GRPG CY+D+P D ++  ++            
Sbjct:   129 LYNKLSVRPSSLEAIPAVIEKAVRTSIYGRPGSCYIDIPGDFVNLQVNKSSVKYVECCPP 188

Query:   193 XXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
                 T       +S + +AVS++  AK+PL++ GKGAAY+RAE  ++KLV+ +G+PFLPT
Sbjct:   189 PPISTAE-----HSAVSEAVSIIAHAKQPLLIIGKGAAYSRAENNIRKLVDLSGLPFLPT 243

Query:   253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312
             PM KG++PD HP    AARS A+   DV +++GARLNW+LHFG PP++ +DVK + +D+C
Sbjct:   244 PMAKGVVPDNHPNCVAAARSTALLHADVIILLGARLNWILHFGLPPRFRQDVKVIQIDIC 303

Query:   313 KEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQ 371
              EE+    +P   L+GD   V + + +E    P     N  W    WKK ++ +L  E +
Sbjct:   304 AEEMGNNVRPAAMLLGDINAVTKQLLEEFSKRPLKYPSNSEW----WKKLREKMLNNE-E 358

Query:   372 LAKDV-----VPFNFMTPMRIIRDAILGVGSPAP-ILVSEGANTMDVGRAVLVQTEPRCR 425
              +KD+     +P N+ T    IR+ +     P   ILVSEGANTMD+GR +L    PR R
Sbjct:   359 RSKDLALQKSLPMNYYTVFHHIRELV-----PKDCILVSEGANTMDIGRTMLPNYHPRQR 413

Query:   426 LDAGTWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEVE 470
             LDAGT+GTMGVGLG+ IAAA+      PE+ V+ +EGDS FGFS +EVE
Sbjct:   414 LDAGTFGTMGVGLGFAIAAALVAKDRTPEKRVICIEGDSAFGFSGMEVE 462

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0016830 "carbon-carbon lyase activity" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

UNIPROTKB|F1MVP8 HACL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 191/471 (40%), Positives = 276/471 (58%)

Query:     6 LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXX 65
             L +    Q+ G  + A++L      +MFG+VGIPVT +A  A ++G+R+I   NEQ    
Sbjct:     9 LSDGLEGQVSGARVIAQALKTQDVNYMFGIVGIPVTEIALAAQEVGIRYIGMRNEQAACY 68

Query:    66 XXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL 125
                    LTG+PG+ L VSGPG VH L G++N  +N WP+++I GS ++     G FQE 
Sbjct:    69 AASAVGYLTGRPGVCLVVSGPGLVHSLGGMANANMNCWPLIVIGGSSERSQETMGAFQEF 128

Query:   126 DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXX 185
              QVEA + +SKF+ +   I  +P  + + +  ++ GRPG CY+D+P D +   ++V    
Sbjct:   129 PQVEACRLYSKFSARPSSIEAIPSIIEKAVRSSIYGRPGACYVDIPADFVSLQVNVSSVK 188

Query:   186 XXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
                                 S +  A S+++ AK+PL++ GKGAAYA AE  ++KLVE  
Sbjct:   189 YVECCMPPPISMAE-----TSAVRMAASVIRNAKQPLVIIGKGAAYAHAEESIRKLVEQC 243

Query:   246 GIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
              +PFLPTPMGKG++ D HP    AARS A+   DV +++GARLNW+LHFG PP++  DVK
Sbjct:   244 KLPFLPTPMGKGVIRDNHPNCVAAARSRALQFADVIVLLGARLNWILHFGLPPRYQPDVK 303

Query:   306 FVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
             F+ VD+C EE+    +P + L+GD   V + + ++    P+       W + + +K K N
Sbjct:   304 FIQVDICAEELGNNVRPAVTLLGDVNAVTKQLLEQFDKTPWQYPPESEWWKVLREKMKSN 363

Query:   365 VLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP-ILVSEGANTMDVGRAVLVQTEPR 423
                 +   +K  +P N+ T    +++ +     P    +VSEGANTMD+GR VL    PR
Sbjct:   364 EALSKELASKKSLPMNYYTVFYHVQEQL-----PRDCFVVSEGANTMDIGRTVLQNYLPR 418

Query:   424 CRLDAGTWGTMGVGLGYCIAAAIACPER----LVVAVEGDSGFGFSAVEVE 470
              RLDAGT+GTMGVGLG+ IAAAI   +R     V+ VEGDS FGFS +EVE
Sbjct:   419 HRLDAGTFGTMGVGLGFAIAAAIVAKDRNPGQRVICVEGDSAFGFSGMEVE 469

GO:0051259 "protein oligomerization" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0016830 "carbon-carbon lyase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

RGD|619849 Hacl1 "2-hydroxyacyl-CoA lyase 1" [Rattus norvegicus (taxid:10116)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 193/476 (40%), Positives = 281/476 (59%)

Query:     4 SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXX 63
             +E  +    Q+ G  + A++L      +MFGVVGIPVT +A  A +LG+++I   NEQ  
Sbjct:     7 AEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGMRNEQAA 66

Query:    64 XXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
                      LTG+PG+ L VSGPG +H L G++N  +N WP+++I GS ++     G FQ
Sbjct:    67 CYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQEAMGAFQ 126

Query:   124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL---HQTIS 180
             E  QVEA + +SKF+ +   I  +P  + + +  ++ GRPG CY+D+P D++     T S
Sbjct:   127 EFPQVEACRLYSKFSARPSSIQHIPFVIEKAVRSSIYGRPGACYIDVPADLVTLQESTTS 186

Query:   181 VXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240
             +               T        S +  A S+L+ AK+PL++ GKGAAY+ AE  ++K
Sbjct:   187 IKYKECCMPPPLSLAET--------SAVRAAASVLRSAKQPLLIIGKGAAYSHAEDSIRK 238

Query:   241 LVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKW 300
             LVE   +PFLPTPMGKG++PD HP    AARS A+   DV ++ GARLNW+LHFG PP++
Sbjct:   239 LVELCNLPFLPTPMGKGVVPDNHPNCVGAARSRALQFADVIVLFGARLNWILHFGLPPRY 298

Query:   301 SKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK 359
               DVKF+ +D+C EE+    +P + L+GD   V + + ++    P+    +  W E + +
Sbjct:   299 QADVKFIQIDICAEELGNNVRPSVTLLGDVNAVSKQLLEQFVKNPWQYPTDSKWWETLRE 358

Query:   360 KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP-ILVSEGANTMDVGRAVLV 418
             K K+N    +   +K  +P N+ T    +++ +     P    +VSEGANTMD+GR VL 
Sbjct:   359 KRKNNEAVSKELASKKSLPMNYYTVFYHVQEQL-----PRNCFIVSEGANTMDIGRTVLQ 413

Query:   419 QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERL----VVAVEGDSGFGFSAVEVE 470
                PR RLDAG++GTMGVGLG+ IAAA+   ER     V+ VEGDS FGFS +EVE
Sbjct:   414 NYLPRHRLDAGSFGTMGVGLGFAIAAAVVAKERSPGQRVICVEGDSAFGFSGMEVE 469

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=ISO;IDA

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0016829 "lyase activity" evidence=ISO

GO:0016830 "carbon-carbon lyase activity" evidence=ISO;IDA

GO:0030976 "thiamine pyrophosphate binding" evidence=ISO;IDA

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0048037 "cofactor binding" evidence=ISO

GO:0051259 "protein oligomerization" evidence=IEA;ISO

UNIPROTKB|Q9UJ83 HACL1 "2-hydroxyacyl-CoA lyase 1" [Homo sapiens (taxid:9606)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 189/476 (39%), Positives = 276/476 (57%)

Query:     1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNE 60
             M  S        Q+ G  + A++L      ++FG+VGIPVT +A  A QLG+++I   NE
Sbjct:     1 MPDSNFAERSEEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGMRNE 60

Query:    61 QXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG 120
             Q           LT +PG+ L VSGPG +H L G++N  +N WP+++I GS ++     G
Sbjct:    61 QAACYAASAIGYLTSRPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQETMG 120

Query:   121 DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS 180
              FQE  QVEA + ++KF+ +   I  +P  + + +  ++ GRPG CY+D+P D ++  ++
Sbjct:   121 AFQEFPQVEACRLYTKFSARPSSIEAIPFVIEKAVRSSIYGRPGACYVDIPADFVNLQVN 180

Query:   181 VXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240
             V                     +       A S+++ AK+PL++ GKGAAYA AE  +KK
Sbjct:   181 VNSIKYMERCMSPPISMAETSAVCT-----AASVIRNAKQPLLIIGKGAAYAHAEESIKK 235

Query:   241 LVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKW 300
             LVE   +PFLPTPMGKG++PD HP    AARS A+   DV ++ GARLNW+LHFG PP++
Sbjct:   236 LVEQYKLPFLPTPMGKGVVPDNHPYCVGAARSRALQFADVIVLFGARLNWILHFGLPPRY 295

Query:   301 SKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK 359
               DVKF+ VD+C EE+    KP + L+G+   V + + +E+   P+       W + + +
Sbjct:   296 QPDVKFIQVDICAEELGNNVKPAVTLLGNIHAVTKQLLEELDKTPWQYPPESKWWKTLRE 355

Query:   360 KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP-ILVSEGANTMDVGRAVLV 418
             K K N    +   +K  +P N+ T    +++ +     P    +VSEGANTMD+GR VL 
Sbjct:   356 KMKSNEAASKELASKKSLPMNYYTVFYHVQEQL-----PRDCFVVSEGANTMDIGRTVLQ 410

Query:   419 QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERL----VVAVEGDSGFGFSAVEVE 470
                PR RLDAGT+GTMGVGLG+ IAAA+   +R     ++ VEGDS FGFS +EVE
Sbjct:   411 NYLPRHRLDAGTFGTMGVGLGFAIAAAVVAKDRSPGQWIICVEGDSAFGFSGMEVE 466

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0016830 "carbon-carbon lyase activity" evidence=IDA;TAS

GO:0030976 "thiamine pyrophosphate binding" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0048037 "cofactor binding" evidence=IDA

GO:0001561 "fatty acid alpha-oxidation" evidence=IDA;TAS

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|E2R9K1 HACL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 186/475 (39%), Positives = 280/475 (58%)

Query:     2 AGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQ 61
             A +E  +    ++ G  + A++L      ++FG+VGIPVT +A  A +LG+R++   NEQ
Sbjct:     5 AFAERSDGGEEKVSGAEVIAQALKTQDVEYVFGIVGIPVTEIAVAAQKLGIRYVGMRNEQ 64

Query:    62 XXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGD 121
                        LTG+PG+ L VSGPG +H L G++N  +N WP+++I GS +++    G 
Sbjct:    65 AACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANVNCWPLIVIGGSSERRQETMGA 124

Query:   122 FQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISV 181
             FQE  QVEA + + KF+ +   I  +P  + + +  ++ GRPG CY+D+P D ++  ++V
Sbjct:   125 FQEFPQVEACRLYCKFSARPSSIETIPSIIEKAVRSSIYGRPGPCYVDIPADFVNFQVNV 184

Query:   182 XXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKL 241
                                     S +  A S+L+ AK+PL++ GKGAAY+RAE  ++KL
Sbjct:   185 NSIKYVECCLPPPVSMAE-----TSAVYMAASVLRNAKRPLLIIGKGAAYSRAEEAIRKL 239

Query:   242 VESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWS 301
             V    +PFLPTPMGKG++PD HP   +AARS A+   DV ++ GARLNW+LHFG PP++ 
Sbjct:   240 VGQCKLPFLPTPMGKGVVPDNHPNCVSAARSRALQFADVIVLFGARLNWILHFGLPPRYQ 299

Query:   302 KDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKK 360
              DVKF+ +D+C EE+    KP + L+GD   V + + ++    P+       W + + +K
Sbjct:   300 PDVKFIQIDICAEELGNNVKPAVSLLGDINAVTKQLLEQFDKTPWQYPPESSWWQTLREK 359

Query:   361 TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP-ILVSEGANTMDVGRAVLVQ 419
              + N    +   ++  +P N+ T    +++ +     P    +VSEGANTMD+GR V+  
Sbjct:   360 MESNEAASKELASQKSLPMNYYTVFYQVQEQL-----PRDCFVVSEGANTMDIGRTVIQN 414

Query:   420 TEPRCRLDAGTWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEVE 470
               PR RLDAGT+GTMGVGLG+ IAAAI      P + V+ VEGDS FGFS +EVE
Sbjct:   415 YLPRHRLDAGTFGTMGVGLGFAIAAAIVARDRNPGKRVICVEGDSAFGFSGMEVE 469

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|J9NS82 HACL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 186/475 (39%), Positives = 280/475 (58%)

Query:     2 AGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQ 61
             A +E  +    ++ G  + A++L      ++FG+VGIPVT +A  A +LG+R++   NEQ
Sbjct:     5 AFAERSDGGEEKVSGAEVIAQALKTQDVEYVFGIVGIPVTEIAVAAQKLGIRYVGMRNEQ 64

Query:    62 XXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGD 121
                        LTG+PG+ L VSGPG +H L G++N  +N WP+++I GS +++    G 
Sbjct:    65 AACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANVNCWPLIVIGGSSERRQETMGA 124

Query:   122 FQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISV 181
             FQE  QVEA + + KF+ +   I  +P  + + +  ++ GRPG CY+D+P D ++  ++V
Sbjct:   125 FQEFPQVEACRLYCKFSARPSSIETIPSIIEKAVRSSIYGRPGPCYVDIPADFVNFQVNV 184

Query:   182 XXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKL 241
                                     S +  A S+L+ AK+PL++ GKGAAY+RAE  ++KL
Sbjct:   185 NSIKYVECCLPPPVSMAE-----TSAVYMAASVLRNAKRPLLIIGKGAAYSRAEEAIRKL 239

Query:   242 VESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWS 301
             V    +PFLPTPMGKG++PD HP   +AARS A+   DV ++ GARLNW+LHFG PP++ 
Sbjct:   240 VGQCKLPFLPTPMGKGVVPDNHPNCVSAARSRALQFADVIVLFGARLNWILHFGLPPRYQ 299

Query:   302 KDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKK 360
              DVKF+ +D+C EE+    KP + L+GD   V + + ++    P+       W + + +K
Sbjct:   300 PDVKFIQIDICAEELGNNVKPAVSLLGDINAVTKQLLEQFDKTPWQYPPESSWWQTLREK 359

Query:   361 TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP-ILVSEGANTMDVGRAVLVQ 419
              + N    +   ++  +P N+ T    +++ +     P    +VSEGANTMD+GR V+  
Sbjct:   360 MESNEAASKELASQKSLPMNYYTVFYQVQEQL-----PRDCFVVSEGANTMDIGRTVIQN 414

Query:   420 TEPRCRLDAGTWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEVE 470
               PR RLDAGT+GTMGVGLG+ IAAAI      P + V+ VEGDS FGFS +EVE
Sbjct:   415 YLPRHRLDAGTFGTMGVGLGFAIAAAIVARDRNPGKRVICVEGDSAFGFSGMEVE 469

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

MGI|MGI:1929657 Hacl1 "2-hydroxyacyl-CoA lyase 1" [Mus musculus (taxid:10090)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 188/474 (39%), Positives = 279/474 (58%)

Query:     4 SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXX 63
             +E  +    Q+ G  + A++L      +MFGVVGIPVT +A  A +LG+++I   NEQ  
Sbjct:     7 AEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGMRNEQAA 66

Query:    64 XXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
                      LTG+PG+ L VSGPG +H L G++N  +N WP+++I GS ++     G FQ
Sbjct:    67 CYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQEAMGAFQ 126

Query:   124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXX 183
             E  QVEA + ++KF+ +   I  +P  + + +  ++ GRPG CY+D+P D +    +V  
Sbjct:   127 EFPQVEACRLYTKFSARPSTIELIPFIIEKAVRSSIYGRPGACYIDIPADFVTLQANVTS 186

Query:   184 XXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
                                   S +  A S+L++AK+PL++ GKGAAY+ AE  ++KLVE
Sbjct:   187 IKYKECCMPPPVSMAE-----TSAVCAAASVLRDAKQPLLIIGKGAAYSHAEDSIRKLVE 241

Query:   244 STGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD 303
                +PFLPTPMGKG++PD HP    AARS A+   DV ++ GARLNW+LHFG PP++  D
Sbjct:   242 QCSLPFLPTPMGKGVVPDNHPNCVGAARSRALQSADVIVLFGARLNWILHFGLPPRYQAD 301

Query:   304 VKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTK 362
             VKF+ +D+C EE+    +P + L+GD   V + + ++    P+    +  W + + +K K
Sbjct:   302 VKFIQIDICAEELGNNVRPSVILLGDIDAVSKQLLEQFDKTPWQCPPDSQWWKTLREKMK 361

Query:   363 DN-VLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP-ILVSEGANTMDVGRAVLVQT 420
              N  +  E+   K + P N+ T    +++ +     P    +VSEGANTMD+GR +L   
Sbjct:   362 SNEAISKELASQKSL-PMNYYTVFYHVQEQL-----PRDSFIVSEGANTMDIGRTMLQNC 415

Query:   421 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERL----VVAVEGDSGFGFSAVEVE 470
              PR RLDAG++GTMGVGLG+ IAAA+   +R     V+ VEGDS FGFS +EVE
Sbjct:   416 LPRHRLDAGSFGTMGVGLGFAIAAALVAKDRSPGQRVICVEGDSAFGFSGMEVE 469

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0005102 "receptor binding" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO;TAS

GO:0006629 "lipid metabolic process" evidence=IDA

GO:0016829 "lyase activity" evidence=IDA

GO:0016830 "carbon-carbon lyase activity" evidence=ISO

GO:0030976 "thiamine pyrophosphate binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=ISO

GO:0051259 "protein oligomerization" evidence=ISO

ASPGD|ASPL0000045214 AN10214 [Emericella nidulans (taxid:162425)]

 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 192/471 (40%), Positives = 268/471 (56%)

Query:    16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXXLTG 75
             G  + A+SL   G T +FG+VGIPV  +A  A+ LG+RF+AF NEQ           +TG
Sbjct:     6 GAQIIARSLRDLGVTVIFGIVGIPVVEIAEEAINLGIRFVAFRNEQACSYAASVYGYMTG 65

Query:    76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
             +PG+ L V GPG +H LAG+ N   N +P+++++GS +     +G FQELD +  + P +
Sbjct:    66 QPGVCLVVGGPGVLHALAGIGNSSANNFPLLVLAGSAETSAVTKGAFQELDAISLLTPHT 125

Query:   136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXX 195
             KFA +A  +  +P  +         GRPG  ++DLP D++   ++               
Sbjct:   126 KFAARASSLDFIPDAIKNAYRTCWYGRPGPTFIDLPADIIQGKLTSQFELPKPENLLVSA 185

Query:   196 XTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
                  G    + I KA  LLK A  PLI+ GKGAAYARAE  ++KLV+ T +PFLPTPMG
Sbjct:   186 PPKASGD--PALILKATQLLKAASAPLIIVGKGAAYARAELGIRKLVDQTQVPFLPTPMG 243

Query:   256 KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE 315
             KG++PD+HPL A++ARS A+   DV LV+GARLNW+LHFGEPPKWS  VK + VD+C EE
Sbjct:   244 KGVVPDSHPLNASSARSAALKHADVVLVLGARLNWILHFGEPPKWSPKVKIIQVDICAEE 303

Query:   316 I--ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA-IWKKTKDNVLKMEVQL 372
             I        LG++GD   V++     +    +      P + A   KK +D   K  ++ 
Sbjct:   304 IGRNAGTSELGILGDISLVVDQFRASLSSWKYSSSAKFPLLLAESAKKNEDKAQKAALRQ 363

Query:   373 AKDVVPFNFMTPMRIIRDAILGVGSPAP----ILVSEGANTMDVGRAVLVQTEPRCRLDA 428
                  P  +     II+ A+  + +P      + VSEGANTMD+ R++     PR RLDA
Sbjct:   364 TPAGKPLTYQRAYHIIKTALNAL-TPVEDGNIVYVSEGANTMDISRSIFPLYHPRQRLDA 422

Query:   429 GTWGTMGVGLGYCIAA---------AIACPERLVVAVEGDSGFGFSAVEVE 470
             GT+ TMGVG+GY +AA         A     + +VA EGDS FGFSA+E+E
Sbjct:   423 GTYATMGVGMGYIVAAHEAFNANPGASTSRPKKIVAFEGDSAFGFSAMEIE 473

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2058 hacl1 "2-hydroxyacyl-CoA lyase 1" [Danio rerio (taxid:7955)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 189/464 (40%), Positives = 273/464 (58%)

Query:    13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXX 72
             ++ G  L A +L      +MFG+VG+P+  +A  A   G++++   NEQ           
Sbjct:     3 EVTGAQLIAAALKDQNVEYMFGIVGVPIIEVAMAAQAAGIKYVGMRNEQAACYAASAIGY 62

Query:    73 LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
             LTG+P + L VSGPG +H L G++N  +N WP++++ GS D+     G FQE  QVEA +
Sbjct:    63 LTGRPAVCLVVSGPGLIHALGGMANANVNCWPVIVLGGSSDRNQETTGAFQEFPQVEACR 122

Query:   133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXX 192
              +SKF+ +   +  +P  V + +  ++ GRPG CY+D+  D+++  I             
Sbjct:   123 LYSKFSARPSSLEMIPAVVEKAVRSSIYGRPGACYIDIAGDMVNAKID---RATVRFVSC 179

Query:   193 XXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
                  V+Q      +I +AV LLK ++ PLI+ GKGAAYARAE E+++LVE TGIPFLPT
Sbjct:   180 CPAPPVSQADC--REITQAVRLLKTSQSPLIIIGKGAAYARAEKEVRELVEVTGIPFLPT 237

Query:   253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312
             PMGKG+LPD HP    AARS A+ Q DV +++GARLNW+LHFG PP++S +VK + VD+C
Sbjct:   238 PMGKGVLPDDHPNCVAAARSRALLQADVIVLLGARLNWILHFGFPPRFSANVKIIQVDLC 297

Query:   313 KEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQ 371
              EE+    +    L+GD K V   + + ++ E +    +  W   + +K   N    +  
Sbjct:   298 AEELSNNVRAASALLGDIKMVTSQLLETVRSESWRFPSDSQWWATLREKITANAQITKAL 357

Query:   372 LAKDVVPFNFMTPMRIIRDAILGVGSPAP-ILVSEGANTMDVGRAVLVQTEPRCRLDAGT 430
               +  +P N+ T    I + +     P   I+VSEGANTMD+GR +L+   PR RLDAGT
Sbjct:   358 SLQTTLPMNYYTAFHHISELL-----PKDCIIVSEGANTMDIGRTMLLNHLPRHRLDAGT 412

Query:   431 WGTMGVGLGYCIAAAIA-CPERL---VVAVEGDSGFGFSAVEVE 470
             +GTMGVG G+ IAAA+    +R    VV VEGDS FGFS +E E
Sbjct:   413 FGTMGVGPGFAIAAAVLEQAQRFGQKVVCVEGDSAFGFSGMEAE 456

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF46	HACL_ARATH	4, ., 1, ., -, ., -	0.7838	0.9502	0.8006	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	482
PRK09259	569	PRK09259, PRK09259, putative oxalyl-CoA decarboxyl	1e-166
TIGR03254	554	TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase	1e-148
COG0028	550	COG0028, IlvB, Thiamine pyrophosphate-requiring en	1e-106
PRK05858	542	PRK05858, PRK05858, hypothetical protein; Provisio	1e-63
PRK06276	586	PRK06276, PRK06276, acetolactate synthase catalyti	2e-55
TIGR00118	558	TIGR00118, acolac_lg, acetolactate synthase, large	3e-52
PRK06456	572	PRK06456, PRK06456, acetolactate synthase catalyti	4e-50
PRK07525	588	PRK07525, PRK07525, sulfoacetaldehyde acetyltransf	4e-48
PRK08322	547	PRK08322, PRK08322, acetolactate synthase; Reviewe	1e-47
PRK08266	542	PRK08266, PRK08266, hypothetical protein; Provisio	4e-47
PRK06048	561	PRK06048, PRK06048, acetolactate synthase 3 cataly	5e-46
PRK06725	570	PRK06725, PRK06725, acetolactate synthase 3 cataly	4e-45
TIGR03457	579	TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acety	4e-45
PRK07282	566	PRK07282, PRK07282, acetolactate synthase catalyti	1e-44
CHL00099	585	CHL00099, ilvB, acetohydroxyacid synthase large su	1e-43
PRK08527	563	PRK08527, PRK08527, acetolactate synthase 3 cataly	9e-43
cd07035	155	cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) bindin	1e-41
PRK08611	576	PRK08611, PRK08611, pyruvate oxidase; Provisional	4e-41
PRK07418	616	PRK07418, PRK07418, acetolactate synthase 3 cataly	4e-41
PRK07710	571	PRK07710, PRK07710, acetolactate synthase catalyti	7e-41
PRK08155	564	PRK08155, PRK08155, acetolactate synthase catalyti	3e-40
pfam00205	136	pfam00205, TPP_enzyme_M, Thiamine pyrophosphate en	8e-40
TIGR02418	539	TIGR02418, acolac_catab, acetolactate synthase, ca	1e-39
PRK06965	587	PRK06965, PRK06965, acetolactate synthase 3 cataly	2e-39
pfam02776	172	pfam02776, TPP_enzyme_N, Thiamine pyrophosphate en	1e-38
PRK07524	535	PRK07524, PRK07524, hypothetical protein; Provisio	5e-38
PLN02470	585	PLN02470, PLN02470, acetolactate synthase	7e-38
PRK07789	612	PRK07789, PRK07789, acetolactate synthase 1 cataly	8e-38
PRK06466	574	PRK06466, PRK06466, acetolactate synthase 3 cataly	2e-37
TIGR01504	588	TIGR01504, glyox_carbo_lig, glyoxylate carboligase	1e-36
PRK11269	591	PRK11269, PRK11269, glyoxylate carboligase; Provis	1e-36
PRK08978	548	PRK08978, PRK08978, acetolactate synthase 2 cataly	2e-36
PRK08617	552	PRK08617, PRK08617, acetolactate synthase; Reviewe	3e-36
COG3960	592	COG3960, COG3960, Glyoxylate carboligase [General	9e-36
cd02004	172	cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate	3e-35
PRK09107	595	PRK09107, PRK09107, acetolactate synthase 3 cataly	3e-34
PRK06154	565	PRK06154, PRK06154, hypothetical protein; Provisio	4e-34
PRK06112	578	PRK06112, PRK06112, acetolactate synthase catalyti	1e-33
PRK08979	572	PRK08979, PRK08979, acetolactate synthase 3 cataly	1e-33
PRK07979	574	PRK07979, PRK07979, acetolactate synthase 3 cataly	2e-33
PRK06882	574	PRK06882, PRK06882, acetolactate synthase 3 cataly	6e-31
PRK08199	557	PRK08199, PRK08199, thiamine pyrophosphate protein	9e-29
PRK06457	549	PRK06457, PRK06457, pyruvate dehydrogenase; Provis	9e-29
TIGR02720	575	TIGR02720, pyruv_oxi_spxB, pyruvate oxidase	2e-26
COG3961	557	COG3961, COG3961, Pyruvate decarboxylase and relat	1e-22
PRK08327	569	PRK08327, PRK08327, acetolactate synthase catalyti	4e-21
PRK08273	597	PRK08273, PRK08273, thiamine pyrophosphate protein	3e-20
cd07039	164	cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding dom	2e-19
PRK07064	544	PRK07064, PRK07064, hypothetical protein; Provisio	3e-18
COG3962	617	COG3962, COG3962, Acetolactate synthase [Amino aci	8e-18
cd00568	168	cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP)	4e-11
TIGR03393	539	TIGR03393, indolpyr_decarb, indolepyruvate decarbo	7e-10
pfam02775	151	pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en	1e-09
PRK09124	574	PRK09124, PRK09124, pyruvate dehydrogenase; Provis	1e-09
cd02010	177	cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) fam	3e-09
PRK06546	578	PRK06546, PRK06546, pyruvate dehydrogenase; Provis	2e-08
cd02015	186	cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) fa	2e-07
cd07038	162	cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) b	2e-07
cd02013	196	cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP	2e-07
cd06586	154	cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding	8e-07
cd02014	178	cd02014, TPP_POX, Thiamine pyrophosphate (TPP) fam	9e-06
PRK07092	530	PRK07092, PRK07092, benzoylformate decarboxylase;	2e-05
PLN02573	578	PLN02573, PLN02573, pyruvate decarboxylase	3e-05
PRK12474	518	PRK12474, PRK12474, hypothetical protein; Provisio	7e-05
TIGR03394	535	TIGR03394, indol_phenyl_DC, indolepyruvate/phenylp	8e-05
PRK08199	557	PRK08199, PRK08199, thiamine pyrophosphate protein	8e-04
cd02002	178	cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa	0.001

>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated

 Score =  480 bits (1237), Expect = e-166
 Identities = 215/467 (46%), Positives = 297/467 (63%), Gaps = 13/467 (2%)

Query: 9   SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAAS 68
            Q    DG  L   +L L G   ++GVVGIP+T LA  A   G+R+I F +EQSAG AA+
Sbjct: 5   DQLQLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAA 64

Query: 69  AYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELD 126
           A G+LT KPG+ LTVS PG ++GL  L+N   N +P++MISGS +++  D  +GD++ELD
Sbjct: 65  AAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELD 124

Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
           Q+ A KPF K A +     ++   VA+ +  AVSGRPGG YLDLP  VL QT+   EA  
Sbjct: 125 QLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEALT 184

Query: 187 -LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
            L+K  + A   +         +D+A+ LLK+AK+PLI+ GKGAAYA+A+ ++++ VE T
Sbjct: 185 SLVKVVDPAPAQLPA----PEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKT 240

Query: 246 GIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
           GIPFLP  M KGLLPDTHP +A AARSLA+   DV L+VGARLNWLL  G+   W  D K
Sbjct: 241 GIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKK 300

Query: 306 FVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
           F+ +D+  +EI+  +P    +VGD   V++ +   +K   F       W++A+ ++ + N
Sbjct: 301 FIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQNTF--KAPAEWLDALAERKEKN 358

Query: 365 VLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRC 424
             KM  +L+ D  P NF   +  IRD +    +P   LV+EGANT+D+ R ++   +PR 
Sbjct: 359 AAKMAEKLSTDTQPMNFYNALGAIRDVL--KENPDIYLVNEGANTLDLARNIIDMYKPRH 416

Query: 425 RLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           RLD GTWG MG+G+GY IAAA+    + VVA+EGDS FGFS +EVE 
Sbjct: 417 RLDCGTWGVMGIGMGYAIAAAVET-GKPVVAIEGDSAFGFSGMEVET 462

Length = 569

>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase

 Score =  435 bits (1120), Expect = e-148
 Identities = 216/463 (46%), Positives = 299/463 (64%), Gaps = 13/463 (2%)

Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
           A  DG  L   +L L G   ++GVVGIPVT LA  A   G+R+I F +EQSAGYAA+A G
Sbjct: 1   ALTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAG 60

Query: 72  YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELDQVE 129
           +LT KPG+ LTVS PG ++GL  L+N   N +P++MISGS ++   D  +GD++E+DQ+ 
Sbjct: 61  FLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLA 120

Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK-LL 188
           A KPF+K A +     ++   +A+ +  AVSGRPGG YLDLP  VL QT+   +A+K L+
Sbjct: 121 AAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEKAKKTLV 180

Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
           K  + A + +         +D+AV LLK+AK+PLI+ GKGAAYA+A+ E+++ VE TGIP
Sbjct: 181 KVVDPAPKQLPS----PDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIP 236

Query: 249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308
           FLP  M KGLLPDTHP +A AARS A+ + DV ++VGARLNWLL  G+   W +D KF+ 
Sbjct: 237 FLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQ 296

Query: 309 VDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLK 367
           VD+   E++  +P    +VGD   V++ +    K+       +  W  AI  K++ NV K
Sbjct: 297 VDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPAD--WRNAIKTKSEKNVAK 354

Query: 368 MEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLD 427
           M  +L+    P N+   +  IRD +    +P   LV+EGANT+D+ R V+   +PR RLD
Sbjct: 355 MAERLSASESPMNYHGALEAIRDVL--KDNPDIYLVNEGANTLDLARNVIDMYKPRHRLD 412

Query: 428 AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
            GTWG MG+G+GY IAAA+   +  VVA+EGDS FGFS +EVE
Sbjct: 413 VGTWGVMGIGMGYAIAAAVETGKP-VVALEGDSAFGFSGMEVE 454

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase [Cellular processes, Detoxification]. Length = 554

>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

 Score =  327 bits (840), Expect = e-106
 Identities = 144/471 (30%), Positives = 219/471 (46%), Gaps = 38/471 (8%)

Query: 13  QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGY 72
            + G     ++L   G   +FG+ G  +  L +     G+R I   +EQ A +AA  Y  
Sbjct: 1   MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYAR 60

Query: 73  LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
            TGKPG+ L  SGPG  + L GL++  +++ P++ I+G       G   FQE+DQV   +
Sbjct: 61  ATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFR 120

Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
           P +K+  + +   ++P+ VA+    A+SGRPG   +DLP DVL         E  +    
Sbjct: 121 PITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPY 180

Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
                          I KA  LL EAK+P+I+ G G   A A  EL++L E  G P + T
Sbjct: 181 RPAPP------PPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTT 234

Query: 253 PMGKGLLPDTHPLAA-------TAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
            MGKG +P+ HPL+        T A + A+ + D+ L VGAR +  +       ++    
Sbjct: 235 LMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG--YSGFAPPAA 292

Query: 306 FVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
            + +D+   EI       + +VGDAK  LE + +E+K E         W+E + +     
Sbjct: 293 IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKPERA------AWLEELLEARAAY 346

Query: 365 VLKMEVQLAKDVVPFNFMTPMRIIR-----DAILGVGSPAPILVSEGANTMDVGRAVLVQ 419
                 +LA D         ++++R     DAI        ++   G + M   R     
Sbjct: 347 RDLALEELADD--GIKPQYVIKVLRELLPDDAI--------VVTDVGQHQMWAAR-YFDF 395

Query: 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
             PR  L +G  GTMG GL   I A +A P+R VVA+ GD GF  +  E+E
Sbjct: 396 YRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELE 446

Length = 550

>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional

 Score =  214 bits (548), Expect = 1e-63
 Identities = 138/456 (30%), Positives = 222/456 (48%), Gaps = 18/456 (3%)

Query: 16  GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG 75
              LAA+ L   G   MF + G  +  L + A + G+R I   +EQ+A +AA A+  LT 
Sbjct: 7   AGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTR 66

Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
            PG+ +  +GPG  +G++ ++    N  P+V++ G      +G G  QE+D V  V P +
Sbjct: 67  VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVT 126

Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAK 195
           KFA  A+      + V Q L+ AV+   G  ++D P D      S+++ +        A 
Sbjct: 127 KFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA---FSMADDDGR----PGAL 179

Query: 196 ETVTQGGIVNSD-IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
             +  G   + D + +A  LL EA++P+I+ G    +  AE  L +L E  GIP L   M
Sbjct: 180 TELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGM 239

Query: 255 GKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314
           G+G++P  HPLA + AR  A+G+ DV LVVG  +++ L FG     ++ V   + D   +
Sbjct: 240 GRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGVFGGTAQLV--HVDDAPPQ 297

Query: 315 EIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAK 374
               R    GL GD   +L  +     D       +  W+E +         +   +LA 
Sbjct: 298 RAHHRPVAAGLYGDLSAILSALAGAGGDRT----DHQGWIEELRTAETAARARDAAELAD 353

Query: 375 DVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTM 434
           D  P +   PMR+  + +  +     I++ +G + +      +    P C LD G +G +
Sbjct: 354 DRDPIH---PMRVYGE-LAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCL 409

Query: 435 GVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
           G G GY +AA +A P R VV ++GD  FGFS ++V+
Sbjct: 410 GTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVD 445

Length = 542

>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit; Reviewed

 Score =  194 bits (494), Expect = 2e-55
 Identities = 130/456 (28%), Positives = 215/456 (47%), Gaps = 30/456 (6%)

Query: 22  KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
           K+L   G   +FG  G  +    +      +  I   +EQ+A +AA  Y   +GK G+ +
Sbjct: 9   KALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCV 68

Query: 82  TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
             SGPG  + + G++    ++ P++ ++G    K  G   FQE+D +    P +K   + 
Sbjct: 69  ATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQI 128

Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQG 201
           K   E+P+      E A +GRPG  ++DLP DV    + + +     K      +  T G
Sbjct: 129 KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKYPIPAKIDLPGYKPTTFG 188

Query: 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD 261
             +   I KA  L+ EA++P+I+ G G   + A  EL +L E   IP   T MGKG  P+
Sbjct: 189 HPLQ--IKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPE 246

Query: 262 THPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314
            HPLA        T A + ++ + DV + +G R +     G+   ++ + K + +D+   
Sbjct: 247 DHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTT-GDISSFAPNAKIIHIDIDPA 305

Query: 315 EIELRKP-HLGLVGDAKKVL-EMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQL 372
           EI       + +VGDAK VL +++ + +K E         W+E + K  K+++ +M+   
Sbjct: 306 EIGKNVRVDVPIVGDAKNVLRDLLAELMKKEI---KNKSEWLERVKKLKKESIPRMDF-- 360

Query: 373 AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR-----AVLVQTE-PRCRL 426
             D  P   + P R+I++ +  +    P        T DVG+     A   +T  PR  +
Sbjct: 361 --DDKP---IKPQRVIKELMEVLREIDPS--KNTIITTDVGQNQMWMAHFFKTSAPRSFI 413

Query: 427 DAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
            +G  GTMG G    I A +A P+  V+A+ GD GF
Sbjct: 414 SSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGF 449

Length = 586

>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit, biosynthetic type

 Score =  184 bits (470), Expect = 3e-52
 Identities = 137/459 (29%), Positives = 213/459 (46%), Gaps = 43/459 (9%)

Query: 22  KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
           +SL   G   +FG  G   +P+          G+  I   +EQ A +AA  Y   +GK G
Sbjct: 9   ESLKDEGVKTVFGYPGGAILPIYDALYNDS--GIEHILVRHEQGAAHAADGYARASGKVG 66

Query: 79  ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
           ++L  SGPG  + + G++   +++ P+V+ +G       G   FQE D +    P +K +
Sbjct: 67  VVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHS 126

Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
            + K   ++P+ + +    A +GRPG   +DLP DV    I     EK+       + TV
Sbjct: 127 FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEYPYPEKV--NLPGYRPTV 184

Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
                    I KA  L+  AKKP+I+ G G   A A  ELK+L E   IP   T MG G 
Sbjct: 185 KGH---PLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGS 241

Query: 259 LPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDV 311
            P+ HPL+        T   +LA+ +CD+ + VGAR +  +  G   K++ + K + +D+
Sbjct: 242 FPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVT-GNLAKFAPNAKIIHIDI 300

Query: 312 CKEEI-ELRKPHLGLVGDAKKVL-EMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKME 369
              EI +  +  + +VGDA+ VL E++ K  + +     K   W+E I K  K+  LKM+
Sbjct: 301 DPAEIGKNVRVDIPIVGDARNVLEELLKKLFELKER---KESAWLEQINKWKKEYPLKMD 357

Query: 370 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR----AVLVQT--EPR 423
                         P ++I +        + +   E   T DVG+    A       +PR
Sbjct: 358 ----YTEEGIK---PQQVIEEL-------SRVTKDEAIVTTDVGQHQMWAAQFYPFRKPR 403

Query: 424 CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
             + +G  GTMG GL   I A +A PE  V+ + GD  F
Sbjct: 404 RFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSF 442

Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this model also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed [Amino acid biosynthesis, Pyruvate family]. Length = 558

>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit; Reviewed

 Score =  179 bits (456), Expect = 4e-50
 Identities = 129/470 (27%), Positives = 222/470 (47%), Gaps = 41/470 (8%)

Query: 14  IDGNTLAAKSLSLFGATHMFGVVGI---PVTSLANRAVQLG-VRFIAFHNEQSAGYAASA 69
             G  +   SL   G   +FG+ G+    +       +  G +R +   +EQ+A +AA  
Sbjct: 2   PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADG 61

Query: 70  YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
           Y   +G PG+    SGPG  + + GL     ++ P++ I+G   +   G+  FQE D + 
Sbjct: 62  YARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMG 121

Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS-VSEAEKLL 188
             +  +K+ +  K I E+P+ +      A +GRPG   +D+P D+ ++ +  +   EK  
Sbjct: 122 VFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKWPEK-- 179

Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
              +  ++  T+  I    + KA  +L  A++P+I+ G G  ++ A  E+ +L E   IP
Sbjct: 180 PLVKGYRDFPTR--IDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIP 237

Query: 249 FLPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLN--WLLHFGEPPK 299
            + T  GK  +P  HPL          A  S+A  + D  LVVGAR +      + E  +
Sbjct: 238 IVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVE 297

Query: 300 WSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH---PWVE 355
             K  KF++V++   + E   K  +G+ G+AK +L  + K I +    LG+      W++
Sbjct: 298 TRK--KFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITE----LGQKRDRSAWLK 351

Query: 356 AIWKKTKDNVLKM-EVQLAKDVVPFNFMTPMR--IIRDAILGVGSPAPILVSEGANTMDV 412
            + K+ K+   +    +    + P+  M  +R  + RDAI+  G      V +     +V
Sbjct: 352 RV-KEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRDAIVTTG------VGQHQMWAEV 404

Query: 413 GRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
              VL   EPR  L +   GTMG GL   + A +A P+++VV ++GD  F
Sbjct: 405 FWEVL---EPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSF 451

Length = 572

>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated

 Score =  174 bits (443), Expect = 4e-48
 Identities = 123/478 (25%), Positives = 203/478 (42%), Gaps = 49/478 (10%)

Query: 22  KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
           ++L   G TH FG++G   +  + L   A   G+RFI   +EQ+AG+ A  Y  +TG+ G
Sbjct: 14  ETLQAHGITHAFGIIGSAFMDASDLFPPA---GIRFIDVAHEQNAGHMADGYTRVTGRMG 70

Query: 79  ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
           +++  +GPG  + +  ++       P+V+++     K  G+G FQE +Q+   +  +K+ 
Sbjct: 71  MVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQ 130

Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
            + +D + + + + +V ++A     G   +++P D  +  I V   + +  E  +  E  
Sbjct: 131 EEVRDPSRMAEVLNRVFDKAKRES-GPAQINIPRDYFYGVIDVEIPQPVRLERGAGGE-- 187

Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
                    + +A  LL EAK P+I+ G G   + A  E K L E    P     +    
Sbjct: 188 -------QSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDA 240

Query: 259 LPDTHPLAA--------TAARSLAIGQCDVALVVGARLNWLLHFGEPPK-----WSKDVK 305
            P +HPL           AA  L I + DV L +G RLN    FG  P+     W KD K
Sbjct: 241 FPGSHPLWVGPLGYNGSKAAMEL-IAKADVVLALGTRLN---PFGTLPQYGIDYWPKDAK 296

Query: 306 FVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
            + VD+  + I L K   +G+ GDAK V   +   + +              I    K  
Sbjct: 297 IIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALI-AAEKSA 355

Query: 365 VLKMEVQLAKDVVPF-------------NFMTPMRIIRDAILGVGSPAPILVSEGANTMD 411
             +       +                 ++M P + +R  I        I+ ++  N   
Sbjct: 356 WEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALR-EIQKALPEDAIVSTDIGNNCS 414

Query: 412 VGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
           +  + L   + R  L  G++G  G      I A IACP+R VV   GD  +G S  EV
Sbjct: 415 IANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEV 472

Length = 588

>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed

 Score =  172 bits (438), Expect = 1e-47
 Identities = 127/445 (28%), Positives = 193/445 (43%), Gaps = 81/445 (18%)

Query: 52  VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC---VHGLA-GLSNGMINTWPIVM 107
           ++ I   +EQ A + A+ YG LTGK G+ L+  GPG    V G+A     GM    P+V 
Sbjct: 39  IKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQLGGM----PMVA 94

Query: 108 ISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167
           I+G    K   +G FQ +D V  + P +K+  +      +P+ V +    A   RPG  +
Sbjct: 95  ITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVH 154

Query: 168 LDLPTDVLH-----QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPL 222
           L+LP D+       + +  S + +     ++              I++A   ++ AK PL
Sbjct: 155 LELPEDIAAEETDGKPLPRSYSRRPYASPKA--------------IERAAEAIQAAKNPL 200

Query: 223 IVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA-TAARS------LAI 275
           I+ G GA    A   L + V+ TGIPF  T MGKG++P+THPL+  TA  S       AI
Sbjct: 201 ILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAI 260

Query: 276 GQCDVALVVGARLNWLLHFGE-PP-KWSK--DVKFVLVDVCKEEIE-LRKPHLGLVGDAK 330
              D+ + VG  +       E PP   +   D K + ++    E++ +  P + +VGD  
Sbjct: 261 EHADLIINVGHDVI------EKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIA 314

Query: 331 KVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNF-MTPMRIIR 389
             L  + +        L     W    + K ++ +     + A D     F M P RI+ 
Sbjct: 315 NSLWQLKER-------LADQPHWDFPRFLKIREAIEAHLEEGADDD---RFPMKPQRIVA 364

Query: 390 D--AILGVGSPAPILVSEGANTMDVG----------RAVLVQTEPRCRLDAGTWGTMGVG 437
           D   ++           +    +D G          RA    T   C LD     TMG G
Sbjct: 365 DLRKVMP---------DDDIVILDNGAYKIWFARNYRAYEPNT---CLLDNA-LATMGAG 411

Query: 438 LGYCIAAAIACPERLVVAVEGDSGF 462
           L   IAA +  P+R V+AV GD GF
Sbjct: 412 LPSAIAAKLVHPDRKVLAVCGDGGF 436

Length = 547

>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional

 Score =  170 bits (433), Expect = 4e-47
 Identities = 133/465 (28%), Positives = 201/465 (43%), Gaps = 36/465 (7%)

Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASA 69
             + G       L   G   +FG+ G  +  L  A       +R I   +EQ+AGY A  
Sbjct: 2   TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFG 61

Query: 70  YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS--CDQKDFGRGDFQEL-D 126
           Y   TG+PG+   V GPG ++  A L        P++ ++G         GRG   E+ D
Sbjct: 62  YARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121

Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
           Q+  ++ F+K+A + +  +E P  VA+  ++ +SGRP    L++P DV  Q   V+ A  
Sbjct: 122 QLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVFGQRAPVAAAPP 181

Query: 187 LLKEAESAKETVTQGGIVNSD-IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
           L      A          + D I  A +L+  AK P+I  G GAA A    E+++L E  
Sbjct: 182 LRPAPPPA---------PDPDAIAAAAALIAAAKNPMIFVGGGAAGAGE--EIRELAEML 230

Query: 246 GIPFLPTPMGKGLLPDTHPLAAT--AARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD 303
             P +    G+G++ D HPL     AA  L   Q DV + +G+RL   L     P     
Sbjct: 231 QAPVVAFRSGRGIVSDRHPLGLNFAAAYEL-WPQTDVVIGIGSRL--ELPTFRWPWRPDG 287

Query: 304 VKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKD 363
           +K + +D+   E+   KP + +V DAK         + D     G   P   A  ++ K 
Sbjct: 288 LKVIRIDIDPTEMRRLKPDVAIVADAKAGTA----ALLDALSKAGSKRPSRRAELRELKA 343

Query: 364 NVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPR 423
                  Q  + V P    + +R IR+A+   G    I V E +              PR
Sbjct: 344 AAR----QRIQAVQP--QASYLRAIREALPDDG----IFVDELSQVGFASWFAFPVYAPR 393

Query: 424 CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE 468
             +  G  GT+G G    + A +A P+R VV++ GD GF F   E
Sbjct: 394 TFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQE 438

Length = 542

>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit; Reviewed

 Score =  168 bits (426), Expect = 5e-46
 Identities = 126/453 (27%), Positives = 209/453 (46%), Gaps = 36/453 (7%)

Query: 22  KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
           K L   G   +FG  G  +  + +      +R I   +EQ+A +AA  Y   TGK G+ +
Sbjct: 16  KCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCV 75

Query: 82  TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
             SGPG  + + G++   +++ PIV ++G   +   G   FQE D      P +K     
Sbjct: 76  ATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLV 135

Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQG 201
           +D  ++P+ + +    A +GRPG   +DLP DV    I     +K+  E    K T  +G
Sbjct: 136 QDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFDYPDKV--ELRGYKPT-YKG 192

Query: 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD 261
                 I +A  L+ +A++P+I  G G   + A  EL +L E+   P   T MG G +P 
Sbjct: 193 NP--QQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPT 250

Query: 262 THPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314
            HPL+        T   + AI + D+ + VGAR +  +  G+   ++ + K + +D+   
Sbjct: 251 EHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVT-GKLASFAPNAKIIHIDIDPA 309

Query: 315 EIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQ 371
           EI    K  + +VGDAK+VL+ + K ++           W++ I  WK  K+  LK + +
Sbjct: 310 EISKNVKVDVPIVGDAKQVLKSLIKYVQYCDR-----KEWLDKINQWK--KEYPLKYKER 362

Query: 372 LAKDVVPFNFMTPM--RIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 429
             +DV+   ++      +  DAI        I+   G + M   +       PR  + +G
Sbjct: 363 --EDVIKPQYVIEQIYELCPDAI--------IVTEVGQHQMWAAQYFKY-KYPRTFITSG 411

Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
             GTMG G    I A +  P++ V+ + GD  F
Sbjct: 412 GLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSF 444

Length = 561

>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit; Validated

 Score =  165 bits (420), Expect = 4e-45
 Identities = 129/489 (26%), Positives = 214/489 (43%), Gaps = 67/489 (13%)

Query: 10  QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASA 69
           Q  ++ G     + L   G T +FG  G  +  + +   + G++ I   +EQ+A +AA  
Sbjct: 11  QCEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEG 70

Query: 70  YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
           Y   +GK G++   SGPG  + + GL++  +++ P+V+I+G       G+  FQE D V 
Sbjct: 71  YARASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVG 130

Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLK 189
              P +K   + +D+ ++ + V +    A SGRPG   +D+P DV ++ ++    E +  
Sbjct: 131 ITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVV-- 188

Query: 190 EAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
           E    K       +   ++ KA+S   +AK+PL+  G G  ++    EL +      IP 
Sbjct: 189 EIPGYKPEPRPDSMKLREVAKAIS---KAKRPLLYIGGGVIHSGGSEELIEFARENRIPV 245

Query: 250 LPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK 302
           + T MG G  P   PL         T A ++A+ +CD+ L +G R +  +  G+   +S 
Sbjct: 246 VSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVT-GKLELFSP 304

Query: 303 DVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI--WK 359
             K V +D+   E          +VGD KK L M+             +  W++ +  WK
Sbjct: 305 HSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHML----LHMSIHTQTDE-WLQKVKTWK 359

Query: 360 -------KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGAN---- 408
                  K K++ LK                P  +I             LVSE  N    
Sbjct: 360 EEYPLSYKQKESELK----------------PQHVIN------------LVSELTNGEAI 391

Query: 409 -TMDVGRAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
            T +VG+  +          PR  L +G  GTMG G    I A +A  E LV+ + GD+ 
Sbjct: 392 VTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDAS 451

Query: 462 FGFSAVEVE 470
           F  +  E++
Sbjct: 452 FQMNIQELQ 460

Length = 570

>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase

 Score =  165 bits (420), Expect = 4e-45
 Identities = 121/476 (25%), Positives = 202/476 (42%), Gaps = 46/476 (9%)

Query: 22  KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
           + L   G TH FG++G       +     G+RFI   +EQ AG+ A  +  +TG+  +++
Sbjct: 10  EVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVI 69

Query: 82  TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
             +GPG  + +  ++       P+V+++     K  G G FQE DQ+   + F+K+    
Sbjct: 70  GQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHV 129

Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVS--EAEKLLKEAESAKETVT 199
           +  + + + + +  ERA     G   L++P D  +  I V      +L + A  A     
Sbjct: 130 RHPSRMAEVLNRCFERAWREM-GPAQLNIPRDYFYGEIDVEIPRPVRLDRGAGGATS--- 185

Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
                   + +A  LL EAK P+I+ G G     A  E K L E  G P + + +     
Sbjct: 186 --------LAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSF 237

Query: 260 PDTHPL--------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPK-----WSKDVKF 306
           P +HPL         + AA  L I   DV L +G RL     FG  P+     W K+ K 
Sbjct: 238 PASHPLWVGPLGYQGSKAAMKL-ISDADVVLALGTRLG---PFGTLPQYGIDYWPKNAKI 293

Query: 307 VLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI------WK 359
           + VD   + I L K   +G+ GDAK     I + +  +             I      W+
Sbjct: 294 IQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKA-GDANRAERKAKIQAERSAWE 352

Query: 360 KT------KDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVG 413
           +       + +   +++ + +     N++ P +++R  +        I+ ++  N   V 
Sbjct: 353 QELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLR-ELEKAMPEDAIVSTDIGNINSVA 411

Query: 414 RAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
            + L   +PR  L   ++G  G      I A IA P+R VVA  GD  +G S  E+
Sbjct: 412 NSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEI 467

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur [Central intermediary metabolism, Other]. Length = 579

>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit; Reviewed

 Score =  164 bits (416), Expect = 1e-44
 Identities = 132/477 (27%), Positives = 224/477 (46%), Gaps = 44/477 (9%)

Query: 1   MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHN 59
           M    L++ ++    G+ L  ++L   G   +FG  G  V  L +      G+R I   +
Sbjct: 1   MEKISLESPKS----GSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARH 56

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
           EQ A + A  Y   TGK G+ +  SGPG  + + G+++ M ++ P+++ +G   +   G+
Sbjct: 57  EQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGK 116

Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
             FQE D V    P +K+  + ++  ++P+ + + +  A +GRPG   +DLP DV    +
Sbjct: 117 DAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV--SAL 174

Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
                        S + T+      +  I K +  L +AKKP+I+ G G  YA A  EL 
Sbjct: 175 ETDFIYDPEVNLPSYQPTLEPN---DMQIKKILKQLSKAKKPVILAGGGINYAEAATELN 231

Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLL 292
              E   IP + T +G+G +  +HPL         + A ++A+ + D  + +G+R +  L
Sbjct: 232 AFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRL 291

Query: 293 HFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH 351
             G P  ++K+ K   +D+   EI ++ K  + +VGDAKK L+M    +  EP       
Sbjct: 292 -TGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQM----LLAEPTVHNNTE 346

Query: 352 PWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--DAILGVGS----PAPILVSE 405
            W+E +   TKD          K+ V  ++    R+++    I  +G      A ++   
Sbjct: 347 KWIEKV---TKD----------KNRVR-SYDKKERVVQPQAVIERIGELTNGDAIVVTDV 392

Query: 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
           G + M   +    Q E R  + +G  GTMG G+   I A IA P++ V+   GD GF
Sbjct: 393 GQHQMWAAQYYPYQNE-RQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGF 448

Length = 566

>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit

 Score =  161 bits (410), Expect = 1e-43
 Identities = 121/426 (28%), Positives = 203/426 (47%), Gaps = 48/426 (11%)

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
           EQ A +AA  Y   TGK G+    SGPG  + + G++   +++ P+++I+G   +   G 
Sbjct: 60  EQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGT 119

Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV----- 174
             FQE+D      P  K +   +D  ++ + VA+    A  GRPG   +D+P DV     
Sbjct: 120 DAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKF 179

Query: 175 -LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
             +     +   K+L      K T+ +       I++A  L+ ++ +PL+  G GA  + 
Sbjct: 180 DYYPPEPGNTIIKILGCRPIYKPTIKR-------IEQAAKLILQSSQPLLYVGGGAIISD 232

Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGA 286
           A  E+ +L E   IP   T MGKG+  + HPL         TA  + A+ +CD+ + +GA
Sbjct: 233 AHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGA 292

Query: 287 RLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPF 345
           R +  +  G+  +++ + + + +D+   EI + R P + +VGD KKVL+ + + +K+ P 
Sbjct: 293 RFDDRVT-GKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKNSPN 351

Query: 346 CLGKNH--PWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI 401
            L       W E I  W+K         + + K       ++P  +I +    +   AP 
Sbjct: 352 LLESEQTQAWRERINRWRKE------YPLLIPKPS---TSLSPQEVINE----ISQLAP- 397

Query: 402 LVSEGANTMDVGR-----AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456
              +   T DVG+     A  ++ +PR  L +   GTMG GL   I A IA P  LV+ +
Sbjct: 398 ---DAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICI 454

Query: 457 EGDSGF 462
            GD+ F
Sbjct: 455 SGDASF 460

Length = 585

>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit; Validated

 Score =  159 bits (403), Expect = 9e-43
 Identities = 124/412 (30%), Positives = 200/412 (48%), Gaps = 26/412 (6%)

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
           EQ+A +AA  Y   +GK G+ +  SGPG  + + GL+   +++ P+V+ISG       G 
Sbjct: 50  EQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT 109

Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
             FQE+D V   +P  K     K I E+P+ + +    A SGRPG  ++D+P DV     
Sbjct: 110 DAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLG 169

Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNS-DIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
                +++    ++ K T       NS  I KA   +KEAKKPL   G GA  + A  E+
Sbjct: 170 EFEYPKEI--SLKTYKPTYKG----NSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEI 223

Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWL 291
           ++LV+ TGIP + T M +G+L    PL         + A ++A+ +CD+ + +GAR +  
Sbjct: 224 RELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDR 283

Query: 292 LHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKN 350
           +  G+  +++K  K + VD+    I ++      +VGD K VL+ + +E+K+E       
Sbjct: 284 VT-GKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKEENP--TTY 340

Query: 351 HPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM 410
             W E + +  + + L  E     D V    + P  +I      +G  A I    G + M
Sbjct: 341 KEWREILKRYNELHPLSYE---DSDEV----LKPQWVIERVGELLGDDAIISTDVGQHQM 393

Query: 411 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
            V +       PR    +G  GTMG GL   + A +A P+++V+   GD   
Sbjct: 394 WVAQFYPF-NYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSI 444

Length = 563

>gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX and related proteins

 Score =  145 bits (368), Expect = 1e-41
 Identities = 56/153 (36%), Positives = 87/153 (56%)

Query: 19  LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
              ++L   G  H+FGV G  +  L +   + G+R+I   +EQ A   A  Y   TGKPG
Sbjct: 2   ALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPG 61

Query: 79  ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
           ++L  SGPG  + + GL+N  +++ P+++I+G       GRG FQE+DQV   +P +K+A
Sbjct: 62  VVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWA 121

Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
            +     E+P+ + +    A+SGRPG   LDLP
Sbjct: 122 YRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many the active sites lie between PP and PYR domains on different subunits. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. This subfamily includes pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC catalyzes the conversion of pyruvate to acetaldehyde and CO2 in alcoholic fermentation. IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway in plants and various plant-associated bacteria, it catalyzes the decarboxylation of IPA to IAA. This subfamily also includes the large catalytic subunit of acetohydroxyacid synthase (AHAS). AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate, a precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. Methanococcus jannaschii sulfopyruvate decarboxylase (MjComDE) and phosphonopyruvate decarboxylase (PpyrDc) also belong to this subfamily. PpyrDc is a homotrimeric enzyme having the PP and PYR domains tandemly arranged on the same subunit. It functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. MjComDE is a dodecamer having the PYR and PP domains on different subunits, it has six alpha (PYR/ComD) subunits and six beta (PP/ComE) subunits. MjComDE catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Length = 155

>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional

 Score =  154 bits (392), Expect = 4e-41
 Identities = 137/482 (28%), Positives = 207/482 (42%), Gaps = 74/482 (15%)

Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASA 69
           A+I       K L  +G  H++G+ G  + ++  A R  Q  ++FI   +E+ A  AA+A
Sbjct: 2   AKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAA 61

Query: 70  YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
           Y  LTGK G+ L++ GPG +H L GL +  ++  P++ ++G       G   FQE   V 
Sbjct: 62  YAKLTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQE---VN 118

Query: 130 AVKPFSKFAVKAKDITE---VPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI---SVSE 183
             K F   AV    I     +P+ V Q +  A   + G   L +P D+  Q I   +   
Sbjct: 119 LEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLTIPDDLPAQKIKDTTNKT 177

Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
            +       S K           DI KA  L+ +AKKP+I+ G GA +A+   EL    E
Sbjct: 178 VDTFRPTVPSPKPK---------DIKKAAKLINKAKKPVILAGLGAKHAKE--ELLAFAE 226

Query: 244 STGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGE 296
              IP + T   KG++PD HP +        T     A+ + D+ ++VG       ++  
Sbjct: 227 KAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGT------NYPY 280

Query: 297 PPKWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVE 355
                K  K + +D     I  R P ++GLVGDAKK L  + + IK       ++  ++E
Sbjct: 281 VDYLPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK-----HVEDRRFLE 335

Query: 356 AIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--------DAILGVGSPAPILVSEGA 407
           A  +        ME        P   + P R++         DA+L V            
Sbjct: 336 ACQENMAKWWKWMEEDENNASTP---IKPERVMAAIQKIADDDAVLSV------------ 380

Query: 408 NTMDVGRAVLVQT-----EPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
              DVG   +            +    +W GTMG GL   IAA IA P+R  +A+ GD G
Sbjct: 381 ---DVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGG 437

Query: 462 FG 463
           F 
Sbjct: 438 FS 439

Length = 576

>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit; Reviewed

 Score =  155 bits (393), Expect = 4e-41
 Identities = 134/489 (27%), Positives = 220/489 (44%), Gaps = 59/489 (12%)

Query: 1   MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLG-VRFIA 56
           +  S     Q  +  G      SL   G  H+FG  G   +P+     +A   G ++ I 
Sbjct: 8   IGDSTTVTPQ--RATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHIL 65

Query: 57  FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD 116
             +EQ A +AA  Y   TGK G+    SGPG  + + G++   +++ P+V+I+G   +  
Sbjct: 66  VRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPA 125

Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV-- 174
            G   FQE D      P  K +   +D +++ + VA+    A SGRPG   +D+P DV  
Sbjct: 126 IGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVGQ 185

Query: 175 -LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
                + V             + TV         I+ A+ L++EA++PL+  G GA  A 
Sbjct: 186 EEFDYVPVEPGSVKPP---GYRPTVK---GNPRQINAALKLIEEAERPLLYVGGGAISAG 239

Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGA 286
           A  ELK+L E   IP   T MGKG   + HPL+        TA  + A+ +CD+ + VGA
Sbjct: 240 AHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGA 299

Query: 287 RLNWLLHF-----GEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEI 340
           R      F     G+  +++   K + +D+   E+ + R+P + +VGD +KVL  + +  
Sbjct: 300 R------FDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERS 353

Query: 341 KDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398
            +      +   W+E I  WK+       + V   +  +      P    ++ +L V   
Sbjct: 354 LEPTT-PPRTQAWLERINRWKQD----YPLVVPPYEGEIY-----P----QEVLLAVRDL 399

Query: 399 APILVSEGANTMDVGR-----AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLV 453
           AP    +   T DVG+     A  ++  PR  + +   GTMG G+   +   +A P+  V
Sbjct: 400 AP----DAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEV 455

Query: 454 VAVEGDSGF 462
           + + GD+ F
Sbjct: 456 ICIAGDASF 464

Length = 616

>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit; Reviewed

 Score =  153 bits (389), Expect = 7e-41
 Identities = 133/494 (26%), Positives = 218/494 (44%), Gaps = 64/494 (12%)

Query: 5   ELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAG 64
               ++   + G  +  ++L   G   +FG  G  V  L +     G+  I   +EQ A 
Sbjct: 7   MSSKTEEKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAI 66

Query: 65  YAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE 124
           +AA  Y  ++GKPG+++  SGPG  + + GL++ MI++ P+V+ +G       G   FQE
Sbjct: 67  HAAEGYARISGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQE 126

Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
            D +    P +K   + +  +++P+ + +    A +GRPG   +D+P D+      V E 
Sbjct: 127 ADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM-----VVEEG 181

Query: 185 EKLLKEAESAKETVTQGGIVNSD-----IDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
           E          +    G   N +     I K V  +  AKKP+I+ G G  +A+A  EL 
Sbjct: 182 EF-----CYDVQMDLPGYQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELT 236

Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLN--- 289
              E   IP + T +G G  P  HPL         T   ++A+ +CD+ + +GAR +   
Sbjct: 237 SYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRV 296

Query: 290 --WLLHFGEPPKWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVL-EMINKEIKDEPF 345
              L +F      +K+     +D+   EI    P  + +V DAK+ L  ++ +E K    
Sbjct: 297 TGNLAYF------AKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGKK--- 347

Query: 346 CLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403
               +H W+  +  WK+      K   +  K         P + I + +  +     I+ 
Sbjct: 348 --ENHHEWLSLLKNWKEKYPLSYKRNSESIK---------PQKAI-EMLYEITKGEAIV- 394

Query: 404 SEGANTMDVGRAVL--VQTEPRCRLD----AGTWGTMGVGLGYCIAAAIACPERLVVAVE 457
                T DVG+  +   Q  P    D    +G  GTMG GL   I A +A P+  VVA+ 
Sbjct: 395 -----TTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIV 449

Query: 458 GDSGFGFSAVEVEV 471
           GD GF  +  E+ V
Sbjct: 450 GDGGFQMTLQELSV 463

Length = 571

>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit; Validated

 Score =  152 bits (385), Expect = 3e-40
 Identities = 113/423 (26%), Positives = 189/423 (44%), Gaps = 43/423 (10%)

Query: 52  VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
           +R I   +EQ AG+ A      TGKP + +  SGPG  + +  +++  +++ P+V I+G 
Sbjct: 52  IRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQ 111

Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
                 G   FQE+D      P +K     +DI E+P+ ++     A SGRPG  ++D+P
Sbjct: 112 VPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIP 171

Query: 172 TDVLHQTISVSE-AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAA 230
            DV    I +        K+A  A +           I  A +++  AK+P++  G G  
Sbjct: 172 KDVQTAVIELEALPAPAEKDAAPAFDE--------ESIRDAAAMINAAKRPVLYLGGGVI 223

Query: 231 YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-----ATAARS--LAIGQCDVALV 283
            + A    ++L E   +P   T M  G+LP  HPL+        ARS    + + D+ +V
Sbjct: 224 NSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIV 283

Query: 284 VGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKD 342
           +GAR +     G+  ++  + K + VD+ + E+ ++++PH+ +  D   VL  +   ++ 
Sbjct: 284 LGARFD-DRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEA 342

Query: 343 EPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNF------MTPMRIIRDAILGVG 396
           +P        W + +        L+ E        P         ++   +I      V 
Sbjct: 343 QP-----RAEWHQLV------ADLQREF-------PCPIPKADDPLSHYGLINAVAACVD 384

Query: 397 SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456
             A I    G + M   +A  +   PR  L +G  GTMG GL   I AA+A PER V+  
Sbjct: 385 DNAIITTDVGQHQMWTAQAYPLN-RPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCF 443

Query: 457 EGD 459
            GD
Sbjct: 444 SGD 446

Length = 564

>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central domain

 Score =  139 bits (354), Expect = 8e-40
 Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 9/137 (6%)

Query: 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-- 265
           IDKA  LL  AK+P+I+ G G   + A  EL+ L E  GIP + T MGKG  P+ HPL  
Sbjct: 1   IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60

Query: 266 -----AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE-LR 319
                  T A + A+ + D+ L +GAR +     G  P+++ D K + +D+   EI    
Sbjct: 61  GMLGMHGTPAANEALEEADLVLAIGARFDD-RGTGSLPEFAPDAKIIHIDIDPAEIGKNY 119

Query: 320 KPHLGLVGDAKKVLEMI 336
              + +VGDAK+ LE +
Sbjct: 120 PVDVPIVGDAKEALEAL 136

The central domain of TPP enzymes contains a 2-fold Rossman fold. Length = 136

>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic

 Score =  149 bits (379), Expect = 1e-39
 Identities = 123/470 (26%), Positives = 208/470 (44%), Gaps = 39/470 (8%)

Query: 16  GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG 75
           G  L    L   G  ++FG+ G  +  + +     G+  I   +EQ+A + A A G +TG
Sbjct: 1   GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITG 60

Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
           KPG+ L  SGPGC + + GL+       P+V I G   + D  +   Q +D V   +P +
Sbjct: 61  KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPIT 120

Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAK 195
           K++ + +D   + + VA     A SG+PG  ++ LP DV+   +SV        +A  A 
Sbjct: 121 KYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSV--------KAIPAS 172

Query: 196 ETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
                G   +  ID+    ++ AK P+++ G  A+       +++L++ T +P + T  G
Sbjct: 173 YAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG 232

Query: 256 KGLLP-DTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK--DVK 305
            G +  +          L         + Q D+ + +G   + + +  EP  W+   D  
Sbjct: 233 AGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIG--YDPIEY--EPRNWNSENDAT 288

Query: 306 FVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
            V +DV   +I+   +P L LVGD    L+++ + I           P   AI +     
Sbjct: 289 IVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYEL-----PPDALAILED---- 339

Query: 365 VLKMEVQLAKDVVPFNF----MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT 420
            LK + +     VP       + P+ II+     V     + V  G++ + + R      
Sbjct: 340 -LKQQREALDR-VPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARY-FRSY 396

Query: 421 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
             R  L +    T+GV L + I AA+  P   VV+V GD GF FS++E+E
Sbjct: 397 RARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELE 446

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family [Energy metabolism, Fermentation]. Length = 539

>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated

 Score =  149 bits (379), Expect = 2e-39
 Identities = 133/480 (27%), Positives = 217/480 (45%), Gaps = 44/480 (9%)

Query: 1   MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHN 59
            + +E  +   A   G  +  K+L+  G   ++G  G  V  + +    Q  ++ +   +
Sbjct: 8   FSTAESLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRH 67

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
           EQ+A +AA  Y   TGK G+ L  SGPG  + + G++   +++ P+V+ISG       G+
Sbjct: 68  EQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQ 127

Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
             FQE D V   +P  K     KD+ ++ + V +    A +GRPG   +D+P DV     
Sbjct: 128 DAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPC 187

Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
                + +  E  S    VT+G   +  I KAVSLL  AK+P I  G G   A A  EL+
Sbjct: 188 EYEYPKSV--EMRSYN-PVTKGH--SGQIRKAVSLLLSAKRPYIYTGGGVILANASRELR 242

Query: 240 KLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLL 292
           +L +  G P   T MG G  P +         +  T   ++A+  CDV + +GAR +  +
Sbjct: 243 QLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRV 302

Query: 293 HFGEPPKW-SKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVL-EMINK----EIKDEPF 345
             G P  + S+  K + +D+    I  R K  + +VGD K+VL E+I +    E   +  
Sbjct: 303 -IGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDAD 361

Query: 346 CLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 405
            L +   W + I      + LK +     +++      P  ++          A +    
Sbjct: 362 ALAQ---WWKQIEGWRSRDCLKYD--RESEII-----KPQYVVEKLWELTDGDAFV---- 407

Query: 406 GANTMDVGRAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
                DVG+  +         EPR  +++G  GTMGVGL Y +   +A P+  VV + G+
Sbjct: 408 ---CSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGE 464

Length = 587

>gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

 Score =  137 bits (348), Expect = 1e-38
 Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 2/165 (1%)

Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
           A++L   G  H+FGV G  +  L +   +  G+R++   +EQ AG+AA  Y   TGKPG+
Sbjct: 8   AEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARATGKPGV 67

Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFA 138
           +L  SGPG  + L GL+N  ++  P+++ISG     D GRG  Q ELDQ+   +P +K+A
Sbjct: 68  VLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALFRPVTKWA 127

Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
            +     E+P+ + +    A+SGRPG  YL+LP DV  + +   E
Sbjct: 128 ERVTSPDEIPEALDRAFRAALSGRPGPVYLELPLDVQLEEVDEPE 172

Length = 172

>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional

 Score =  145 bits (368), Expect = 5e-38
 Identities = 125/462 (27%), Positives = 193/462 (41%), Gaps = 47/462 (10%)

Query: 24  LSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTV 83
           L  +G   +FG+ G+    L       G+R +   +EQ AG+ A  Y  ++GKPG+   +
Sbjct: 12  LEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFII 71

Query: 84  SGPGCVHGLAGLSNGMINTWPIVMISG--SCDQKDFGRGDFQEL-DQVEAVKPFSKFAVK 140
           +GPG  +    +     ++ P+++IS          GRG   EL DQ   V   + F+  
Sbjct: 72  TGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHT 131

Query: 141 AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQ 200
                ++P+ +A+      S RP   ++++P DVL      + A+ LL    +      +
Sbjct: 132 LMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL-----AAPADHLLP---APPTRPAR 183

Query: 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 260
            G   + + +A   L  A++PLI+ G GA    A   L+ L E    P   T   KGLLP
Sbjct: 184 PGPAPAALAQAAERLAAARRPLILAGGGA--LAAAAALRALAERLDAPVALTINAKGLLP 241

Query: 261 DTHPLAATAARSLA-----IGQCDVALVVGARLN-------WLLHFGEPPKWSKDVKFVL 308
             HPL   A++SL      I + DV L VG  L        +   F  P       + + 
Sbjct: 242 AGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPG------ELIR 295

Query: 309 VDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLK 367
           +D+  +++     P L LVGDA+  LE +   +  +         W  A        V  
Sbjct: 296 IDIDPDQLARNYPPALALVGDARAALEALLARLPGQA----AAADWGAA-------RVAA 344

Query: 368 MEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLD 427
           +   L  +  P         + D IL    P  I V +    +  G        PR   +
Sbjct: 345 LRQALRAEWDP--LTAAQVALLDTILAA-LPDAIFVGDSTQPVYAGNLYFDADAPRRWFN 401

Query: 428 AGT-WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE 468
           A T +GT+G GL   I AA+  PER VV + GD G  F+  E
Sbjct: 402 ASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPE 443

Length = 535

>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase

 Score =  145 bits (368), Expect = 7e-38
 Identities = 111/430 (25%), Positives = 196/430 (45%), Gaps = 44/430 (10%)

Query: 52  VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
           +R +   +EQ   +AA  Y   +GK G+ +  SGPG  + + GL++ ++++ P+V I+G 
Sbjct: 52  IRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQ 111

Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
             ++  G   FQE   VE  +  +K      D+ ++P+ + +    A SGRPG   +D+P
Sbjct: 112 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIP 171

Query: 172 TDVLHQTISV----------SEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKP 221
            D+  Q ++V              +L K  E ++            +++ V L+ E+K+P
Sbjct: 172 KDI-QQQLAVPNWNQPMKLPGYLSRLPKPPEKSQ------------LEQIVRLISESKRP 218

Query: 222 LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLA 274
           ++  G G   +  E  L++ VE TGIP   T MG G  P +  L+        T   + A
Sbjct: 219 VVYVGGGCLNSSEE--LREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYA 276

Query: 275 IGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVL 333
           +   D+ L  G R +  +  G+   ++     V +D+   EI + ++PH+ +  D K  L
Sbjct: 277 VDSADLLLAFGVRFDDRVT-GKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLAL 335

Query: 334 EMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAIL 393
           + +NK +++          W   + ++ +   L        D +P     P   I+  +L
Sbjct: 336 QGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLSYPTF--GDAIP-----PQYAIQ--VL 386

Query: 394 GVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERL 452
              +    ++S G     +  A   +  EPR  L +G  G MG GL   I AA A P+ +
Sbjct: 387 DELTDGNAIISTGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAI 446

Query: 453 VVAVEGDSGF 462
           VV ++GD  F
Sbjct: 447 VVDIDGDGSF 456

Length = 585

>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated

 Score =  145 bits (369), Expect = 8e-38
 Identities = 128/464 (27%), Positives = 210/464 (45%), Gaps = 48/464 (10%)

Query: 22  KSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKP 77
           +SL   G   +FG+ G   +PV   L +      VR +   +EQ AG+AA  Y   TG+ 
Sbjct: 39  RSLEELGVDVVFGIPGGAILPVYDPLFDST---KVRHVLVRHEQGAGHAAEGYAQATGRV 95

Query: 78  GILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKF 137
           G+ +  SGPG  + +  +++  +++ P+V I+G   +   G   FQE D V    P +K 
Sbjct: 96  GVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKH 155

Query: 138 AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKET 197
                D  ++P+ +A+    A +GRPG   +D+P D L    + S   ++          
Sbjct: 156 NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRM---DLPGYRP 212

Query: 198 VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257
           VT+       I +A  L+  A++P++  G G   A A  EL++L E TGIP + T M +G
Sbjct: 213 VTKPH--GKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARG 270

Query: 258 LLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHF-----GEPPKWSKDVK 305
             PD+HP          T A   A+ + D+ + +GAR      F     G+   ++ D K
Sbjct: 271 AFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGAR------FDDRVTGKLDSFAPDAK 324

Query: 306 FVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
            +  D+   EI + R   + +VGD K+V+  +   ++ E    GK  P + A W      
Sbjct: 325 VIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGK--PDLTAWWAYLDG- 381

Query: 365 VLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR-----AVLVQ 419
             +    L  D      + P  +I   +  +  P  I V+       VG+     A  + 
Sbjct: 382 -WRETYPLGYDEPSDGSLAPQYVIE-RLGEIAGPDAIYVA------GVGQHQMWAAQFID 433

Query: 420 TE-PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
            E PR  L++G  GTMG  +   + A +  P++ V A++GD  F
Sbjct: 434 YEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCF 477

Length = 612

>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit; Validated

 Score =  144 bits (364), Expect = 2e-37
 Identities = 119/443 (26%), Positives = 194/443 (43%), Gaps = 70/443 (15%)

Query: 52  VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
           V  I   +EQ+A + A  Y   TGK G++L  SGPG  + + G++   +++ P+V++SG 
Sbjct: 43  VEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQ 102

Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
                 G   FQE D V   +P  K +   K  +E+P+ + +    A SGRPG   +D+P
Sbjct: 103 VPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIP 162

Query: 172 TDVLHQTISVSEAEKLLKE-AESAK----ETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 226
            D+       + AEK   E  +  K        +G   +  I KAV +L  AK+P+I  G
Sbjct: 163 KDM------TNPAEKFEYEYPKKVKLRSYSPAVRGH--SGQIRKAVEMLLAAKRPVIYSG 214

Query: 227 KGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCD 279
            G     A   L +L     +P   T MG G  P T         +  T   ++A+   D
Sbjct: 215 GGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHAD 274

Query: 280 VALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVL-EMIN 337
           V L VGAR +  +  G P K+  + K + +D+    I +  K  + +VG  + VL EM+ 
Sbjct: 275 VILAVGARFDDRVTNG-PAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLA 333

Query: 338 --KEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFN-----FMTPMRIIR- 389
             KEI ++P     +   + A WK+        E +    + P++      + P +++  
Sbjct: 334 ILKEIGEKP-----DKEALAAWWKQID------EWRGRHGLFPYDKGDGGIIKPQQVVET 382

Query: 390 -------DAILGVGSPAPILVSEGANTMDVGRAVLVQT------EPRCRLDAGTWGTMGV 436
                  DA +               T DVG+  +         +P   +++G  GTMG 
Sbjct: 383 LYEVTNGDAYV---------------TSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGF 427

Query: 437 GLGYCIAAAIACPERLVVAVEGD 459
           GL   +   +A P++ V  V G+
Sbjct: 428 GLPAAMGVKLAFPDQDVACVTGE 450

Length = 574

>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase

 Score =  142 bits (359), Expect = 1e-36
 Identities = 136/458 (29%), Positives = 207/458 (45%), Gaps = 31/458 (6%)

Query: 28  GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
           G T  FGV G  +     A +A   G+R I   + + A + A  Y   T G  G+ +  S
Sbjct: 17  GITTAFGVPGAAINPFYSALKA-HGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 75

Query: 85  GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
           GP     + GL +   ++ PI+ I+G   +    + DFQ +D     KP SK AV  ++ 
Sbjct: 76  GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREA 135

Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
             VP+ + Q      SGRPG   +DLP DV      V+E E      E     V +    
Sbjct: 136 ALVPRVLQQAFHLMRSGRPGPVLIDLPFDV-----QVAEIEFDPDTYEPL--PVYKPAAT 188

Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
            + I+KAV +L  A++PLIV G G   A A   L++  E TG+P +PT MG G +PD H 
Sbjct: 189 RAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHE 248

Query: 265 LAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVDVCKEE 315
           L A      T+ R  +  + + D    +G R  W   H G    +++  KFV VD+   +
Sbjct: 249 LMAGMVGLQTSHRYGNATLLESDFVFGIGNR--WANRHTGSVDVYTEGRKFVHVDIEPTQ 306

Query: 316 I-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIW-KKTKDNVLKMEVQLA 373
           I  +  P LG+V DAK  L+++  E+  E    G+     E  W    +     +  +  
Sbjct: 307 IGRVFAPDLGIVSDAKAALKLL-VEVAQELKKAGRLPDRSE--WAADCQQRKRTLLRKTH 363

Query: 374 KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGT 433
            D VP   + P R+  +     G     + + G + +  G  +L   +PR  ++ G  G 
Sbjct: 364 FDNVP---VKPQRVYEEMNKAFGRDVCYVTTIGLSQI-AGAQMLHVYKPRHWINCGQAGP 419

Query: 434 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           +G  +   +    A P+R VVA+ GD  F F   E+ V
Sbjct: 420 LGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAV 457

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. Length = 588

>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional

 Score =  142 bits (359), Expect = 1e-36
 Identities = 140/473 (29%), Positives = 203/473 (42%), Gaps = 61/473 (12%)

Query: 28  GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
           G T  FGV G  +     A R    G+R I   + + A + A  Y   T G  G+ +  S
Sbjct: 18  GVTTAFGVPGAAINPFYSAMRKHG-GIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 76

Query: 85  GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
           GP     + GL +   ++ PI+ I+G   +    + DFQ +D     KP +K+AV  ++ 
Sbjct: 77  GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREP 136

Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI----SVSEAEKLLKEAESAKETVTQ 200
             VP+   Q      SGRPG   +DLP DV    I       E   + K A +  +    
Sbjct: 137 ALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLPVYKPAATRAQ---- 192

Query: 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 260
                  I+KA+ +L  A++PLIV G G   A A   L +  E TG+P +PT MG G +P
Sbjct: 193 -------IEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIP 245

Query: 261 DTHPLAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVDV 311
           D HPL A      T+ R  +  +   D  L +G R  W   H G    ++K  KFV VD+
Sbjct: 246 DDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNR--WANRHTGSVEVYTKGRKFVHVDI 303

Query: 312 CKEEI-ELRKPHLGLVGDAKKVLEM---INKEIKDEPFCLGKNHPWVEAIW--KKTKDNV 365
              +I  +  P LG+V DAK  LE+   + +E K     L     WV      K+T    
Sbjct: 304 EPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAG-RLPDRSAWVADCQERKRT---- 358

Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-------GANTMDVGRAVLV 418
             +  +   D VP   + P R+  +     G      VS         A  + V +    
Sbjct: 359 --LLRKTHFDNVP---IKPQRVYEEMNKAFG-RDTCYVSTIGLSQIAAAQFLHVYK---- 408

Query: 419 QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
              PR  ++ G  G +G  +   +    A P+R VVA+ GD  F F   E+ V
Sbjct: 409 ---PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAV 458

Length = 591

>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed

 Score =  141 bits (357), Expect = 2e-36
 Identities = 118/439 (26%), Positives = 200/439 (45%), Gaps = 72/439 (16%)

Query: 51  GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
           GV  +   +EQ A  AA  Y   TGK G+ +  SGPG  + + GL++ ++++ P+V I+G
Sbjct: 38  GVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITG 97

Query: 111 SCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170
                  G   FQE+D +      +K +   + + E+P+ +A+  E A SGRPG   +D+
Sbjct: 98  QVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDI 157

Query: 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAA 230
           P D+    ++  E E  L   E+            +++++A +LL +AKKP++  G G  
Sbjct: 158 PKDIQ---LAEGELEPHLTTVENEPA------FPAAELEQARALLAQAKKPVLYVGGGVG 208

Query: 231 YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALV 283
            A A   L++ + +TG+P + T  G G +   HP       +  T A +LA+ +CD+ + 
Sbjct: 209 MAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIA 268

Query: 284 VGARLNWLLHF-----GEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMIN 337
           VGAR      F     G+   ++   K + +D+   EI +LR+ H+ L GD   +L  + 
Sbjct: 269 VGAR------FDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQ 322

Query: 338 KEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS 397
           + +  +         W +                  +    + +  P         G   
Sbjct: 323 QPLNID--------AWRQ-------------HCAQLRAEHAWRYDHP---------GEAI 352

Query: 398 PAPIL---VSE--GANTM---DVGR-----AVLVQ-TEPRCRLDAGTWGTMGVGLGYCIA 443
            AP L   +S+   A+T+   DVG+     A  ++ T P   + +   GTMG GL   I 
Sbjct: 353 YAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIG 412

Query: 444 AAIACPERLVVAVEGDSGF 462
           A +A P+  V+ V GD  F
Sbjct: 413 AQVARPDDTVICVSGDGSF 431

Length = 548

>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed

 Score =  140 bits (355), Expect = 3e-36
 Identities = 122/500 (24%), Positives = 211/500 (42%), Gaps = 105/500 (21%)

Query: 19  LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
           L   SL   G  ++FG+ G  +  + +     G   I   +EQ+A + A+A G LTGKPG
Sbjct: 10  LVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPG 69

Query: 79  ILLTVSGPGCVHGLAGLSNGMI--NTW--PIVMISGSCDQKDFGRGDFQELDQVEAVKPF 134
           ++L  SGPG     + L+ G++       P+V I G   + D  +   Q +D V   +P 
Sbjct: 70  VVLVTSGPGV----SNLATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPI 125

Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESA 194
           +K++ + +D   + + +A     A SGRPG  ++ LP DV+   ++         +A + 
Sbjct: 126 TKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTS--------KAIAP 177

Query: 195 KETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                 G     DI+    L+K AK P+++ G  A+       +++L+E T +P + T  
Sbjct: 178 LSKPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQ 237

Query: 255 GKGLLPDTHPLAAT-AARSLAIG------------QCDVALVVGARLNWLLHFG----EP 297
             G++     L      R   +G            + D+ + +G        +     EP
Sbjct: 238 AAGVIS--RELEDHFFGR---VGLFRNQPGDELLKKADLVITIG--------YDPIEYEP 284

Query: 298 PKWSK--DVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWV 354
             W+   D   + +DV   EI+   +P   L+GD    L+++ +++      L       
Sbjct: 285 RNWNSEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD--GLSLSPQS--- 339

Query: 355 EAIWKKTKDNVLKM-EVQLAKDVVPFNFMTPMRII---RDAI-------LGVGS------ 397
             I ++ +  + ++ E     +    +   P+RII   +D +       + VGS      
Sbjct: 340 LEILEELRAQLEELAERPARLEEGAVH---PLRIIRALQDIVTDDTTVTVDVGSHYIWMA 396

Query: 398 -------PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE 450
                  P  +L S G           +QT             +GV L + IAAA+  P 
Sbjct: 397 RYFRSYEPRHLLFSNG-----------MQT-------------LGVALPWAIAAALVRPG 432

Query: 451 RLVVAVEGDSGFGFSAVEVE 470
           + VV+V GD GF FSA+E+E
Sbjct: 433 KKVVSVSGDGGFLFSAMELE 452

Length = 552

>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function prediction only]

 Score =  139 bits (352), Expect = 9e-36
 Identities = 134/460 (29%), Positives = 207/460 (45%), Gaps = 35/460 (7%)

Query: 28  GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
           G T  FGV G  +     A R    G+R I   + + A + A  Y   T G  G+ +  S
Sbjct: 18  GITTAFGVPGAAINPFYSALRKHG-GIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 76

Query: 85  GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
           GP     + GL +   ++ PI+ I+G   +    + DFQ +D     KP SK+AV  ++ 
Sbjct: 77  GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREP 136

Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
             VP+ + Q      SGRPG   +DLP DV      V+E E      E     V +    
Sbjct: 137 ALVPRVLQQAFHLMRSGRPGPVLIDLPFDV-----QVAEIEFDPDMYEPL--PVYKPAAT 189

Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
               +KA+++L +A++PLIV G G   A A   L++  E TG+P +PT MG G +PD HP
Sbjct: 190 RVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLMGWGCIPDDHP 249

Query: 265 LAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVDVCKEE 315
           L A      T+ R  +  +   D+   +G R  W   H G    +++  KF+ VD+   +
Sbjct: 250 LMAGMVGLQTSHRYGNATLLASDMVFGIGNR--WANRHTGSVEVYTEGRKFIHVDIEPTQ 307

Query: 316 I-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGK---NHPWVEAIWKKTKDNVLKMEVQ 371
           I  +  P LG+V DAK  L ++  ++  E    GK      WV    ++ +  + K    
Sbjct: 308 IGRVFCPDLGIVSDAKAALTLL-LDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHF- 365

Query: 372 LAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW 431
              D VP   + P R+  +     G     + + G + +      L   +PR  ++ G  
Sbjct: 366 ---DNVP---VKPQRVYEEMNKAFGRDVCYVTTIGLSQI-AAAQFLHVFKPRHWINCGQA 418

Query: 432 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           G +G  +   +    A P+R VVA+ GD  F F   E+ V
Sbjct: 419 GPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAV 458

Length = 592

>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

 Score =  128 bits (325), Expect = 3e-35
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query: 400 PILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
            I+VS+G NTMD  R +L   +PR RLDAGT+GT+GVGLGY IAAA+A P++ VV VEGD
Sbjct: 16  AIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGD 75

Query: 460 SGFGFSAVEVE 470
             FGFS +E+E
Sbjct: 76  GAFGFSGMELE 86

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. Length = 172

>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated

 Score =  135 bits (341), Expect = 3e-34
 Identities = 135/476 (28%), Positives = 210/476 (44%), Gaps = 42/476 (8%)

Query: 7   QNSQNA-QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAG 64
           Q S    Q+ G  +  ++L   G  H+FG  G  V  + +   Q   ++ I   +EQ AG
Sbjct: 3   QKSHMPRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAG 62

Query: 65  YAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE 124
           +AA  Y   TGKPG++L  SGPG  + +  L + ++++ P+V I+G       G   FQE
Sbjct: 63  HAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQE 122

Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
            D V   +P +K     KD+ ++ + + +    A SGRPG   +D+P DV   T + +  
Sbjct: 123 CDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQFATGTYTPP 182

Query: 185 EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA--AYARAEGELKKLV 242
           +K       + +   +G      I +AV LL  AK+P+I  G G   +   A   L++LV
Sbjct: 183 QKA--PVHVSYQPKVKGDA--EAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELV 238

Query: 243 ESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFG 295
           E TG P   T MG G  P +         +  T   ++A+  CDV L VGAR +  +  G
Sbjct: 239 ELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRIT-G 297

Query: 296 EPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH--P 352
               +S + K + +D+    I +  +  + ++GD   VLE + +  K       K     
Sbjct: 298 RLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALAD 357

Query: 353 WVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM 410
           W   I  W+               DV+    M    I R   L  G    I       T 
Sbjct: 358 WWGQIARWRARNSLAYTPS----DDVI----MPQYAIQRLYELTKGRDTYI-------TT 402

Query: 411 DVGRAVL--VQ----TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 460
           +VG+  +   Q     EP   + +G  GTMG GL   +   IA P+ LV+ + GD+
Sbjct: 403 EVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDA 458

Length = 595

>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional

 Score =  134 bits (340), Expect = 4e-34
 Identities = 118/461 (25%), Positives = 198/461 (42%), Gaps = 30/461 (6%)

Query: 35  VVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG--KPGILLTVSGPGCVHGL 92
           + G PV  L + A   G+R +    E+ A + A  Y   T   + G+     GPG  +  
Sbjct: 38  LFGFPVNELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGAENAF 97

Query: 93  AGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCV 151
            G++    ++ P++ +     +   G  D     + +   +  +K+  +     EVP+ +
Sbjct: 98  GGVAQAYGDSVPVLFLPTGYPR---GSTDVAPNFESLRNYRHITKWCEQVTLPDEVPELM 154

Query: 152 AQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKA 211
            +   R  +GRPG   L+LP DVL + +     +        ++ +      V  ++ +A
Sbjct: 155 RRAFTRLRNGRPGPVVLELPVDVLAEELDELPLDH-----RPSRRSRPGADPV--EVVEA 207

Query: 212 VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA----- 266
            +LL  A++P+I  G+G  YA+A  ELK+L E   IP + T  GK   P+ HPLA     
Sbjct: 208 AALLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGG 267

Query: 267 ----ATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPH 322
               AT A  L   + DV   +G  L    ++G P    K +    +D      +    H
Sbjct: 268 RARPATVAHFLR--EADVLFGIGCSLT-RSYYGLPMPEGKTIIHSTLDDADLNKDYPIDH 324

Query: 323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL-KMEVQLAKDVVPFNF 381
            GLVGDA  VL+ + +E++            V A  +  +   L K   +L  D  P N 
Sbjct: 325 -GLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPIN- 382

Query: 382 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYC 441
             P R++ +    V     I+  +  +  D      V + P   L  G    +G GLG  
Sbjct: 383 --PYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLA 440

Query: 442 IAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482
           + A +A P+ LV+ + GD+ FG + ++ E  +   I I +I
Sbjct: 441 MGAKLARPDALVINLWGDAAFGMTGMDFETAVRERIPILTI 481

Length = 565

>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit; Validated

 Score =  133 bits (336), Expect = 1e-33
 Identities = 124/489 (25%), Positives = 203/489 (41%), Gaps = 49/489 (10%)

Query: 9   SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAAS 68
                       A++L   G   +FG   +P ++L   A  +G+R IA+  E + G  A 
Sbjct: 9   GFTLNGTVAHAIARALKRHGVEQIFGQ-SLP-SALFLAAEAIGIRQIAYRTENAGGAMAD 66

Query: 69  AYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQV 128
            Y  ++GK  ++   +GP     +A L+  +  + PIV +    ++    R  FQELD +
Sbjct: 67  GYARVSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHI 126

Query: 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLL 188
              +  +K+  +      +   V Q    A SGRPG   L LP D+L    + + A    
Sbjct: 127 ALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLT---AAAAAPAAP 183

Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
           +        + +       + +A SLL +A++P++V G G   + A   L  L    G+P
Sbjct: 184 RSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLP 243

Query: 249 FLPTPMGKGLLPDTHPLAA------TAARSLA------IGQCDVALVVGARLN------W 290
              T MGKG + +THPL+          RS        + + DV L+VG R N      W
Sbjct: 244 VATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSW 303

Query: 291 LLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK--DEPFCLG 348
            L       + +  +++ +DV  EE+      L LVGDA+  L  +   ++  D     G
Sbjct: 304 SL-------YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALRGRDLAARAG 356

Query: 349 KNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEG-- 406
           +      AI    + +          D  P   + P RI+ + +  V +   I+V++   
Sbjct: 357 RRAALEPAIAAGREAHREDSAPVALSDASP---IRPERIMAE-LQAVLTGDTIVVADASY 412

Query: 407 -----ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
                AN +   RA +    PR     G  G +G G+   I A +A P   V+ + GD G
Sbjct: 413 SSIWVANFLTARRAGMRFLTPR-----GLAG-LGWGVPMAIGAKVARPGAPVICLVGDGG 466

Query: 462 FGFSAVEVE 470
           F     E+E
Sbjct: 467 FAHVWAELE 475

Length = 578

>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit; Validated

 Score =  133 bits (335), Expect = 1e-33
 Identities = 117/468 (25%), Positives = 203/468 (43%), Gaps = 41/468 (8%)

Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRA-VQLGVRFIAFHNEQSAGYAASAY 70
             + G ++  +SL   G  H+FG  G  V  + +    + G+  I   +EQ+A + A  Y
Sbjct: 2   EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGY 61

Query: 71  GYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEA 130
              TGK G++L  SGPG  + + G++   +++ P+V++SG       G   FQE D +  
Sbjct: 62  ARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121

Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKE 190
            +P  K +   KD  ++P+ + +    A +GRPG   +DLP D L+  I          +
Sbjct: 122 SRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCLNPAILHPYEYPESIK 181

Query: 191 AESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250
             S   T +        I + +  L  AKKP++  G GA  + A+ ++ +L E   +P +
Sbjct: 182 MRSYNPTTSGH---KGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVV 238

Query: 251 PTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARL-----NWLLHFGEPP 298
            T MG G  P TH        +      ++A+   D+   +G R      N L       
Sbjct: 239 STLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNNL------E 292

Query: 299 KWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI 357
           K+  +   + +D+    I    +  + +VG A KVL+ +   + +       +   + + 
Sbjct: 293 KYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESG--ETNDEAAIASW 350

Query: 358 WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR--- 414
           W +    V +    LA D      + P ++I + +  + +    + S      DVG+   
Sbjct: 351 WNEI--EVWRSRNCLAYDKSS-ERIKPQQVI-ETLYKLTNGDAYVAS------DVGQHQM 400

Query: 415 -AVLVQ--TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
            A L     +PR  +++G  GTMG GL   +    A P+  VV V GD
Sbjct: 401 FAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGD 448

Length = 572

>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit; Validated

 Score =  132 bits (334), Expect = 2e-33
 Identities = 125/470 (26%), Positives = 203/470 (43%), Gaps = 49/470 (10%)

Query: 14  IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGY 72
           + G  +  +SL   G   +FG  G  V  + +    +G +  +   +EQ+A + A     
Sbjct: 4   LSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLAR 63

Query: 73  LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
            TG+ G++L  SGPG  + + G++   +++ P+V++SG       G   FQE D V   +
Sbjct: 64  ATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISR 123

Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
           P  K +   K   ++P+ + +    A SGRPG   +DLP D+L+    +           
Sbjct: 124 PVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMR 183

Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
           S   T  QG      I +A+  L  AKKP++  G GA  A    +LK+LVE   +P + +
Sbjct: 184 SYNPTT-QGH--KGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSS 240

Query: 253 PMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARL-----NWLLHFGEPPKW 300
            MG G  P TH  +        T   ++ +   DV   VG R      N L       K+
Sbjct: 241 LMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNL------AKY 294

Query: 301 SKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKV----LEMINKEIKDEPFCLGKNHPWVE 355
             +   + +D+    I       + +VGDA++V    LE++++E   +P    ++  W +
Sbjct: 295 CPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRD--WWQ 352

Query: 356 AIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR- 414
            I +      LK +    K       + P  +I          A +       T DVG+ 
Sbjct: 353 QIEQWRARQCLKYDTHSEK-------IKPQAVIETLWRLTKGDAYV-------TSDVGQH 398

Query: 415 ---AVLVQT--EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
              A L     +PR  +++G  GTMG GL   +   +A PE  VV V GD
Sbjct: 399 QMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGD 448

Length = 574

>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit; Validated

 Score =  125 bits (315), Expect = 6e-31
 Identities = 123/472 (26%), Positives = 204/472 (43%), Gaps = 51/472 (10%)

Query: 13  QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYG 71
           ++ G  +  +SL   G  ++FG  G  V  + +    L G+  +   +EQ+A + A  Y 
Sbjct: 3   KLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYA 62

Query: 72  YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV 131
             TGK G +L  SGPG  + + G++    ++ P+V++SG       G   FQE D +   
Sbjct: 63  RSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGIS 122

Query: 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEA 191
           +P  K +   K+  ++P  + +    A +GRPG   +D+P D+      V+ A K   E 
Sbjct: 123 RPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM------VNPANKFTYEY 176

Query: 192 ESAKETVTQGGIVNS---DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
                  +    V      I KA+  L  AKKP++  G G   A    +L +  +   +P
Sbjct: 177 PEEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLP 236

Query: 249 FLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARL-----NWLLHFGE 296
              + MG G  P T         +  T   + A+ + D+ L +G R      N L     
Sbjct: 237 VTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNL----- 291

Query: 297 PPKWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVE 355
             K+  + K + +D+    I    P ++ +VG AK VLE     +++E   L K+   + 
Sbjct: 292 -AKYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEEN--LAKSQTDLT 348

Query: 356 AIWKKTKDNVLK--MEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVG 413
           A W++  +   K  +E     DV+      P +++  AI  + +    + S      DVG
Sbjct: 349 AWWQQINEWKAKKCLEFDRTSDVI-----KPQQVVE-AIYRLTNGDAYVAS------DVG 396

Query: 414 RAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
           +  +         +PR  +++G  GTMG GL   I    A PE  VV V GD
Sbjct: 397 QHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGD 448

Length = 574

>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated

 Score =  118 bits (299), Expect = 9e-29
 Identities = 77/280 (27%), Positives = 117/280 (41%), Gaps = 23/280 (8%)

Query: 21  AKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
             +L   G   +F V G   + V  +L +      +R I    E  A   A AYG LTG+
Sbjct: 15  VDALRANGVERVFCVPGESYLAVLDALHDET---DIRVIVCRQEGGAAMMAEAYGKLTGR 71

Query: 77  PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK 136
           PGI     GPG  +   G+     ++ P+++  G   +    R  FQE+D      P +K
Sbjct: 72  PGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAK 131

Query: 137 FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKE 196
           +  +  D   +P+ V++    A SGRPG   L LP DVL +T  V +A            
Sbjct: 132 WVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEVPDAPPY--------- 182

Query: 197 TVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK 256
                    +D+ +   LL  A++PL++ G       A  +L+   E  G+P       +
Sbjct: 183 RRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQ 242

Query: 257 GLLPDTHPLAA-----TAARSLA--IGQCDVALVVGARLN 289
            L  + HP  A         +LA  I + D+ L VG RL 
Sbjct: 243 DLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLG 282

Length = 557

>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional

 Score =  118 bits (298), Expect = 9e-29
 Identities = 113/465 (24%), Positives = 201/465 (43%), Gaps = 57/465 (12%)

Query: 22  KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
           + L   G   ++G+ G  +  L +   +  V+++   +E+ A  AAS    +TGKP   +
Sbjct: 10  RVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACM 69

Query: 82  TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
             SGPG +H L GL +  ++  P++ ++G  +    G   FQE   V   K F   AV  
Sbjct: 70  GTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQE---VNLTKLFDDVAVFN 126

Query: 142 KDITEVPKCVAQVLERAVS---GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
           + +   P+    ++ RA+     + G  +++LP D+L ++           E + +K T 
Sbjct: 127 QILIN-PENAEYIIRRAIREAISKRGVAHINLPVDILRKS----------SEYKGSKNTE 175

Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE-LKKLVESTGIPFLPTPMGKG 257
                 + D  +A  L+KE++KP+++ G G    R  G+ + +  E  G P + T  GKG
Sbjct: 176 VGKVKYSIDFSRAKELIKESEKPVLLIGGG---TRGLGKEINRFAEKIGAPIIYTLNGKG 232

Query: 258 LLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310
           +LPD  P       L  T     A+ + D+ +++G    ++         +K  K + VD
Sbjct: 233 ILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVNFL------NKSAKVIQVD 286

Query: 311 VCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCL---GKNHPWVEAIWKKTKDNVL 366
           +    I  R    L       + L +  +E K + F     GK   W+++I K+      
Sbjct: 287 IDNSNIGKRLDVDLSYPIPVAEFLNIDIEE-KSDKFYEELKGKKEDWLDSISKQENSLDK 345

Query: 367 KMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRL 426
            M+ Q         ++   +  +DA+        I+   G  TM   R      E     
Sbjct: 346 PMKPQR------VAYIVSQKCKKDAV--------IVTDTGNVTMWTARHFRASGEQTFIF 391

Query: 427 DAGTW-GTMGVGLGYCIAAAIAC-PERLVVAVEGDSGFGFSAVEV 469
            A  W G+MG+G+   + A+ A   +R V++  GD GF  + +E+
Sbjct: 392 SA--WLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMEL 434

Length = 549

>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase

 Score =  112 bits (282), Expect = 2e-26
 Identities = 114/458 (24%), Positives = 195/458 (42%), Gaps = 43/458 (9%)

Query: 22  KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
           K L  +G  H++G+ G    S  +   A +  + +I   +E+    AA+A   LTGK G+
Sbjct: 7   KVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGV 66

Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
               +GPG  H L GL +   +  P++ + G           FQE+++       + +  
Sbjct: 67  CFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNR 126

Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVT 199
            A     +P  + + + RA +   G   + +P D   Q I     +     +  + +T  
Sbjct: 127 TAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDFGWQEIP----DNDYYASSVSYQTPL 181

Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
                   + +AV  LK A++P+I +G GA   +A  EL+ L E   IP + T + KG++
Sbjct: 182 LPAPDVEAVTRAVQTLKAAERPVIYYGIGA--RKAGEELEALSEKLKIPLISTGLAKGII 239

Query: 260 PDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK-FVLVDV 311
            D +P         A    + A+ Q D+ L VG        F E  K  K+ K F+ +D+
Sbjct: 240 EDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYP----FAEVSKAFKNTKYFIQIDI 295

Query: 312 CKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEV 370
              ++  R    + ++ DAKK L  I    + EP    ++ PW    W+    NV     
Sbjct: 296 DPAKLGKRHHTDIAVLADAKKALAAILA--QVEP---RESTPW----WQANVANVKNWRA 346

Query: 371 QLAKDVVPFNFMT--PMRI--IRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRCR 425
            LA         T  P++   +  AI  +     I  +  G   ++  R   ++  P+ +
Sbjct: 347 YLAS----LEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDININSNR--HLKMTPKNK 400

Query: 426 -LDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
            + +  + TMGVG+   IAA +  P+R V  + GD  F
Sbjct: 401 WITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAF 438

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name [Energy metabolism, Aerobic]. Length = 575

>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]

 Score =  100 bits (251), Expect = 1e-22
 Identities = 81/290 (27%), Positives = 121/290 (41%), Gaps = 33/290 (11%)

Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
              L+  G   +FGV G    SL ++   + G+R++   NE +A YAA  Y  L G    
Sbjct: 11  FDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGI-SA 69

Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGRGDFQELDQVE 129
           L+T  G G +  L G++       P+V I G                 G GDF+      
Sbjct: 70  LVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFK--VFHR 127

Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAV-SGRPGGCYLDLPTDVLHQTISVSEAEKLL 188
             K  +       DI   P+ + +V+  A+   RP   Y+ LP DV    I        L
Sbjct: 128 MSKEITCAQAMLTDINTAPREIDRVIRTALKQRRPV--YIGLPADVADLPIEAPLTPLDL 185

Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
           +   S  E       ++  ID    L+ +AKKP+I+     +    E ELKKL+ +TG P
Sbjct: 186 QLKTSDPE------ALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFP 239

Query: 249 FLPTPMGKGLLPDTHP---------LAATAARSLAIGQCDVALVVGARLN 289
               PMGKG++ ++HP         L+    R  A+   D+ L +G  L 
Sbjct: 240 VATLPMGKGVIDESHPNYLGVYNGKLSEPEVRE-AVESADLILTIGVLLT 288

Length = 557

>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit; Validated

 Score = 96.2 bits (240), Expect = 4e-21
 Identities = 101/446 (22%), Positives = 176/446 (39%), Gaps = 75/446 (16%)

Query: 67  ASAYGY--LTGKPGILLTVSGPGCVH---GLAGLSNGMINTW----PIVMISGSC---DQ 114
           + A+GY  +TGKP  ++       VH   G A    G+ N      P+++ +G     ++
Sbjct: 64  SMAHGYALVTGKPQAVM-------VHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEE 116

Query: 115 KDFG-RGDF----QE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168
            + G R       QE  DQ   V+ + K+  + +   ++ + VA+ ++ A+S   G  YL
Sbjct: 117 GELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYL 176

Query: 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKG 228
            LP +VL + +   +A          +           DI +A  +L  A++P+I+  + 
Sbjct: 177 TLPREVLAEEVPEVKA------DAGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRA 230

Query: 229 AAYARAEGELKKLVESTGIP---FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285
              A     L++L E   IP   +    +     P  HPL         + + D+ LVV 
Sbjct: 231 GRTAEGFASLRRLAEELAIPVVEYAGEVVN---YPSDHPLHLGPDPRADLAEADLVLVVD 287

Query: 286 ARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR--KPHLGLVGDAKKVLEMINKEIKDE 343
           + + W+     P   ++ ++ + VD  K  I L      L +  D    L+ + + +K  
Sbjct: 288 SDVPWIPKKIRPDADARVIQ-IDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSL 346

Query: 344 PFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI-- 401
                +      A  ++     L++  + AK              R  I  +    PI  
Sbjct: 347 ASAERRRARRRRAAVRE-----LRIRQEAAK--------------RAEIERLKDRGPITP 387

Query: 402 --LVSEGANTMDVGRAVLV---QTEPR-CRLD-AGTWGTMGV--GLGYCIAAAI----AC 448
             L        D     +V      PR  RL+  G++   G   GLG+ + AA+    A 
Sbjct: 388 AYLSYCLGEVAD-EYDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLAT 446

Query: 449 PERLVVAVEGDSGFGFSAVEVEVWLS 474
           P+RLV+A  GD  F F   E   W++
Sbjct: 447 PDRLVIATVGDGSFIFGVPEAAHWVA 472

Length = 569

>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional

 Score = 93.4 bits (233), Expect = 3e-20
 Identities = 115/450 (25%), Positives = 176/450 (39%), Gaps = 79/450 (17%)

Query: 45  NRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWP 104
            RA      F+   +E+ A + A A+   TG+ G+ L  SGPG +H L GL +  ++  P
Sbjct: 37  GRA-DDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYDAKLDHVP 95

Query: 105 IVMISGSCDQKDFGRGDF-QELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVS-- 160
           +V I G   +   G G + QE+D     K     F         VP+ +  +++RAV   
Sbjct: 96  VVAIVGQQARAALG-GHYQQEVDLQSLFKDVAGAFVQMVT----VPEQLRHLVDRAVRTA 150

Query: 161 -GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV--NSDIDKAVSLLKE 217
                   + LP DV  Q +             S     T+  +V  + D+ +A  +L  
Sbjct: 151 LAERTVTAVILPNDV--QELEYEPPPHAHGTVHSGV-GYTRPRVVPYDEDLRRAAEVLNA 207

Query: 218 AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAA 270
            +K  I+ G GA  A    E+  + E  G       +GK  LPD  P       L  T  
Sbjct: 208 GRKVAILVGAGALGATD--EVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKP 265

Query: 271 RSLAIGQCDVALVVGARL---NWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKP-HLGLV 326
               + +CD  L+VG+      +L   G         + V +D+    + LR P  + LV
Sbjct: 266 SYELMRECDTLLMVGSSFPYSEFLPKEG-------QARGVQIDIDGRMLGLRYPMEVNLV 318

Query: 327 GDAKKVLEMINKEIKDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTP 384
           GDA + L  +   ++ +      +  W E I  W       L+    +  D  P N   P
Sbjct: 319 GDAAETLRALLPLLERKK-----DRSWRERIEKWVARWWETLEARAMVPAD--PVN---P 368

Query: 385 MRIIR--------DAILGVGSPAPILVSEGANTMDVG-------RAVLVQTEPRCRLDAG 429
            R+          +AIL               T D G       R + ++      L +G
Sbjct: 369 QRVFWELSPRLPDNAIL---------------TADSGSCANWYARDLRMRRGMMASL-SG 412

Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
           T  TMG  + Y IAA  A P+R V+A+ GD
Sbjct: 413 TLATMGPAVPYAIAAKFAHPDRPVIALVGD 442

Length = 597

>gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX

 Score = 84.9 bits (211), Expect = 2e-19
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAV--QLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
            ++L  +G   ++G+ G  +  L + A+  +  + FI   +E++A +AASA   LTGK G
Sbjct: 7   VETLENWGVKRVYGIPGDSINGLMD-ALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLG 65

Query: 79  ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
           + L  SGPG +H L GL +   +  P++ I+G     + G   FQE+D +   K  + + 
Sbjct: 66  VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYN 125

Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 177
                  ++P+ + + +  A++ R G   L LP DV   
Sbjct: 126 ETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGDVQDA 163

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of different subunits. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. Length = 164

>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 114/500 (22%), Positives = 194/500 (38%), Gaps = 78/500 (15%)

Query: 13  QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYG 71
           ++    L A  L   G    FGV+ I    + +   + G +RF+    E  A   A A+ 
Sbjct: 2   KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHA 61

Query: 72  YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQEL-DQV 128
            ++G  G+ LT +G G  +    L   +    P++ I+G  +    D   G   E  DQ+
Sbjct: 62  RVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQL 121

Query: 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVS---GRPGG-CYLDLPTDVLHQTISVSEA 184
             ++  SK A +   +      +A  +  AV      P G   +++P D+    I + + 
Sbjct: 122 TMLRAVSKAAFR---VRSAETALA-TIREAVRVALTAPTGPVSVEIPIDIQAAEIELPDD 177

Query: 185 EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES 244
              +  A    +         + + +    L  A++PL+  G GA +A A  E+K+LV+ 
Sbjct: 178 LAPVHVAVPEPDA--------AAVAELAERLAAARRPLLWLGGGARHAGA--EVKRLVD- 226

Query: 245 TGIPFLPTPMGKGLLPDTHPLA------ATAARSLAIGQCDVALVVGARL------NWLL 292
            G   + +  G+G++P+ HP +      + A  +L    CD+ LVVG+RL       + L
Sbjct: 227 LGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEAL-YKTCDLLLVVGSRLRGNETLKYSL 285

Query: 293 HFGEPPKWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNH 351
               P         + VD          P  L + GDA +VL  +   ++          
Sbjct: 286 ALPRP--------LIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEG--------R 329

Query: 352 PWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMD 411
             V+  +       L+   + A   +    + P   + DA+          V       D
Sbjct: 330 LSVDPAF----AADLRAAREAAVADL-RKGLGPYAKLVDALRAALPRDGNWVR------D 378

Query: 412 V-------GRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGF 464
           V       G  +L   EPR  + A   G +G GL   I AA+A P R  V + GD G   
Sbjct: 379 VTISNSTWGNRLLPIFEPRANVHA-LGGGIGQGLAMAIGAALAGPGRKTVGLVGDGGLML 437

Query: 465 ------SAVEVEVWLSCIIM 478
                 +AV+    +  ++M
Sbjct: 438 NLGELATAVQENANMVIVLM 457

Length = 544

>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]

 Score = 85.9 bits (213), Expect = 8e-18
 Identities = 83/319 (26%), Positives = 129/319 (40%), Gaps = 58/319 (18%)

Query: 58  HNEQSAGYAASAYGYLTGKPGILLTVS--GPGCVHGLAGLSNGMINTWPIVMISGSCDQK 115
           HNEQ   +AA AY     +  I    S  GPG  + +   +   +N  P++++ G     
Sbjct: 63  HNEQGMAHAAIAYAKQHRRRRIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDV--- 119

Query: 116 DFG-RGDFQELDQVE-----------AVKPFSKFAVKAKDITEVPKCVAQVLERA--VSG 161
            F  R     L Q+E             +P S++     D    P+ +   L RA  V  
Sbjct: 120 -FATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYF----DRITRPEQLMSALPRAMRVMT 174

Query: 162 RPGGC---YLDLPTDVLHQTISVSE---AEKLLKEAESAKETVTQGGIVNSDIDKAVSLL 215
            P  C    L L  DV  +     E    +++ +      +          ++  A +L+
Sbjct: 175 DPADCGPVTLALCQDVQAEAYDYPESFFEKRVWRIRRPPPDER--------ELADAAALI 226

Query: 216 KEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------AAT 268
           K AKKPLIV G G  Y+ A   L+   E+ GIP + T  GK  L   HPL         T
Sbjct: 227 KSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGT 286

Query: 269 AARSLAIGQCDVALVVGARL------NWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPH 322
            A + A  + D+ + +G RL      +  L F  P      VKF+ ++V   +   +   
Sbjct: 287 LAANRAAEEADLVIGIGTRLQDFTTGSKAL-FKNP-----GVKFLNLNVQPFDA-YKHDA 339

Query: 323 LGLVGDAKKVLEMINKEIK 341
           L LV DA+  LE +++ + 
Sbjct: 340 LPLVADARAGLEALSEALG 358

Length = 617

>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 25/83 (30%), Positives = 38/83 (45%)

Query: 388 IRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIA 447
           +  A+        I+V++  N+       L     R  L +  +G MG GL   I AA+A
Sbjct: 2   VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALA 61

Query: 448 CPERLVVAVEGDSGFGFSAVEVE 470
            P+R VV + GD GF  +  E+ 
Sbjct: 62  APDRPVVCIAGDGGFMMTGQELA 84

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168

>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia family

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 102/483 (21%), Positives = 166/483 (34%), Gaps = 109/483 (22%)

Query: 24  LSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLT 82
           L+  G  H+FGV G       +  +    + ++   NE +A YAA  Y    G    LLT
Sbjct: 11  LTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGA-AALLT 69

Query: 83  VSGPGCVHGLAGLSNGMINTWPIVMI----------SGSCDQKDFGRGDFQELDQVEAVK 132
             G G +  + G++       P++ I           G       G GDF+   ++ A  
Sbjct: 70  TFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEV 129

Query: 133 PFSKFAVKAKDIT-EVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEA 191
             ++  +  ++ T E+ + +   L      RPG  YL LP DV  + ++      +  + 
Sbjct: 130 TVAQAVLTEQNATAEIDRVITTALRER---RPG--YLMLPVDVAAKAVTPPVNPLVTHKP 184

Query: 192 ESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251
             A   +       +  D A + L  AK+  ++    A     +  L+K V+   +P   
Sbjct: 185 AHADSAL------RAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHAT 238

Query: 252 TPMGKGLLPDTHP--------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD 303
             MGKG+L +            A+T A   AI   D  + VG R    +  G        
Sbjct: 239 LLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAG-------- 290

Query: 304 VKFVLVDVCKEEIELRKPHLGLVG----------DAKKVLEMINKEIKDE-------PFC 346
             F      ++ I++ +PH   VG          DA + L  + +            PF 
Sbjct: 291 --FTHQLTPEQTIDV-QPHAARVGNVWFTGIPMNDAIETLVELCEHAGLMWSSSGAIPFP 347

Query: 347 LGKNHPWV---EAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403
                      E  W+  +                         +R        P  I++
Sbjct: 348 QPDESRSALSQENFWQTLQ-----------------------TFLR--------PGDIIL 376

Query: 404 SEGANTMDVGRAVLVQTEPRCRLDAGT-------WGTMGVGLGYCIAAAIACPERLVVAV 456
           ++   T   G A L       RL A         WG++G  L     A  ACP R V+ +
Sbjct: 377 AD-QGTSAFGAADL-------RLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILL 428

Query: 457 EGD 459
            GD
Sbjct: 429 IGD 431

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria [Central intermediary metabolism, Other]. Length = 539

>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           G + M   R       PR  L +G  GTMG GL   I A +A P+R VVA+ GD GF  +
Sbjct: 3   GCHQMWAARY-YRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQMN 61

Length = 151

>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 114/481 (23%), Positives = 185/481 (38%), Gaps = 85/481 (17%)

Query: 18  TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGYLTGK 76
              AK+L   G   ++GV G  +  L++   ++G + ++   +E+ A +AA A   LTG+
Sbjct: 7   DYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGE 66

Query: 77  PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK 136
             +     GPG +H + GL +   N  P++ I+      + G G FQE    E  +  S 
Sbjct: 67  LAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSH 126

Query: 137 FAVKAKDITEVPKCVAQVLERAVS---GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAES 193
           +     +  ++P    +VL  A+       G   + LP DV  +       E+       
Sbjct: 127 YCELVSNPEQLP----RVLAIAMRKAILNRGVAVVVLPGDVALKPAP----ERATPHWYH 178

Query: 194 AKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253
           A + V        ++ K  +LL  +    ++ G G A A    EL  L E+   P +   
Sbjct: 179 APQPVVTPA--EEELRKLAALLNGSSNITLLCGSGCAGAHD--ELVALAETLKAPIVHAL 234

Query: 254 MGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF 306
            GK  +   +P       L   ++   A+  CD  L++G        F     +  D K 
Sbjct: 235 RGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTD------FPYRQFYPTDAKI 288

Query: 307 VLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIK---DEPFCLGKNHPWVEAIWKKTK 362
           + +D+    +  R P  LGLVGD K  L  +   ++   D  F                 
Sbjct: 289 IQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKTDRKFL---------------- 332

Query: 363 DNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA--PI-------LVSEGAN----- 408
           D  L+   +  K +             D  L V S    PI        +SE A      
Sbjct: 333 DKALEHYRKARKGL-------------DD-LAVPSDGGKPIHPQYLARQISEFAADDAIF 378

Query: 409 TMDVGRAVL-----VQTEPRCRLDAGTW--GTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
           T DVG   +     ++   + RL  G++  G+M   +   + A  A P R VVA+ GD G
Sbjct: 379 TCDVGTPTVWAARYLKMNGKRRL-LGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGG 437

Query: 462 F 462
           F
Sbjct: 438 F 438

Length = 574

>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 384 PMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT-EPR-CRLDAGTWGTMGVGLGYC 441
           P RI+ D    +G    +L+  GA+ + + R    +T  P  C +  G   TMGV L   
Sbjct: 1   PQRIVHDLRAVMGDDDIVLLDVGAHKIWMAR--YYRTYAPNTCLISNG-LATMGVALPGA 57

Query: 442 IAAAIACPERLVVAVEGDSGFGFSAVEVE 470
           I A +  P+R VVAV GD GF  ++ E+E
Sbjct: 58  IGAKLVYPDRKVVAVSGDGGFMMNSQELE 86

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. Length = 177

>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 12/211 (5%)

Query: 28  GATHMFGVVGI---PVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVS 84
           G   ++G+VG    P+     R    G+ ++   +E++A +AA+A   LTGK  +     
Sbjct: 17  GVKRIYGIVGDSLNPIVDAVRRTG--GIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSC 74

Query: 85  GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
           GPG +H + GL +   +  P++ I+        G G FQE          S +       
Sbjct: 75  GPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSA 134

Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
            + P+ +   ++ AV    G   + LP D+  +      A  ++      + TV      
Sbjct: 135 EQAPRVLHSAIQHAV-AGGGVSVVTLPGDIADEPAPEGFAPSVI---SPRRPTVVPD--- 187

Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
            +++      + EAKK  +  G G   A AE
Sbjct: 188 PAEVRALADAINEAKKVTLFAGAGVRGAHAE 218

Length = 578

>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
            +PR  L +G  GTMG GL   I A +A P++ V+ ++GD  F
Sbjct: 38  KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSF 80

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. Length = 186

>gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 33/169 (19%)

Query: 24  LSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLT 82
           L   G  H+FGV G     L +   +  G+R++   NE +AGYAA  Y  + G  G L+T
Sbjct: 7   LKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKG-LGALVT 65

Query: 83  VSGPG---CVHGLAG-----LSNGMINTWPIVMISGSCDQKD----------FGRGDFQE 124
             G G    ++G+AG     +        P+V I G+   K            G GDF  
Sbjct: 66  TYGVGELSALNGIAGAYAEHV--------PVVHIVGAPSTKAQASGLLLHHTLGDGDFDV 117

Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPT 172
              ++  +  +  A +  D     + + +VL  A+   RP   Y+++P 
Sbjct: 118 --FLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPV--YIEIPR 162

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many the active sites lie between PP and PYR domains on different subunits. PDC catalyzes the conversion of pyruvate to acetaldehyde and CO2 in alcoholic fermentation. IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway in plants and various plant-associated bacteria, it catalyzes the decarboxylation of IPA to IAA. Also belonging to this group is Mycobacterium tuberculosis alpha-keto acid decarboxylase (MtKDC) which participates in amino acid degradation via the Ehrlich pathway, and Lactococcus lactis branched-chain keto acid decarboxylase (KdcA) an enzyme identified as being involved in cheese ripening, which exhibits a very broad substrate range in the decarboxylation and carboligation reactions. Length = 162

>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 380 NFMTPMRIIRDAILGVGSPAPILVS-EGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGL 438
           N M P +++R+  L    P   +VS +  N   V  + L   +PR  +   ++G  G  L
Sbjct: 2   NPMHPRQVLRE--LEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYAL 59

Query: 439 GYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
              I A  A P+R VVA+ GD  +G S +E+
Sbjct: 60  PAIIGAKAAAPDRPVVAIAGDGAWGMSMMEI 90

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. Length = 196

>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 28  GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85
           G  H+FG  G  ++SL  A R            +E  A  AA+ Y    G P +++  SG
Sbjct: 11  GVRHVFGYPGDEISSLLDALREGD-KRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSG 68

Query: 86  PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDIT 145
            G ++ + GL++      P+V + G+       +  FQ +  +   +   +  + +    
Sbjct: 69  TGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPA 128

Query: 146 EVPKCVAQVLERAVSGRPGGCYLDLP 171
           E+P  +   +  A +   G   + LP
Sbjct: 129 ELPAGIDHAIRTAYAS-QGPVVVRLP 153

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate decarboxylase (ComDE), and the E1 component of human pyruvate dehydrogenase complex (E1- PDHc) the PYR and PP domains appear on different subunits. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. For many of these enzymes the active sites lie between PP and PYR domains on different subunits. However, for the homodimeric enzymes 1-deoxy-D-xylulose 5-phosphate synthase (DXS) and Desulfovibrio africanus pyruvate:ferredoxin oxidoreductase (PFOR), each active site lies at the interface of the PYR and PP domains from the same subunit. Length = 154

>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 429 GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
           G   TMG GL   IAA +A P+R V+A+ GD GF
Sbjct: 48  GLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGF 81

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. Length = 178

>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 22/230 (9%)

Query: 67  ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELD 126
           A  Y   TG    +   S  G  + +  L     N  P+V+ +G   +       F  L 
Sbjct: 64  ADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPF--LA 121

Query: 127 QVEAV---KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
            V+A    KP+ K++++     +VP  +A+    A+    G  ++ +P D   Q      
Sbjct: 122 AVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDWDQ-----P 176

Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
           AE L      A+   +      + + +    L  A++P +V G     A A  +  +L E
Sbjct: 177 AEPLP-----ARTVSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAE 231

Query: 244 STGIPFLPTPM-GKGLLPDTHPL------AATAARSLAIGQCDVALVVGA 286
               P    PM G+   P+ HPL      A+    S  +   D+ LV+GA
Sbjct: 232 RHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGA 281

Length = 530

>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 69/269 (25%), Positives = 109/269 (40%), Gaps = 46/269 (17%)

Query: 21  AKSLSLFGATHMFGVVG-IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
           A+ L   G T +F V G   +T L +   + G+  I   NE +AGYAA  Y    G    
Sbjct: 23  ARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGAC 82

Query: 80  LLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRG----------DF-QE 124
           ++T      V GL+ L N +   +    P++ I G  +  D+G            DF QE
Sbjct: 83  VVTF----TVGGLSVL-NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQE 137

Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS-----GRPG----GCYLDLPTDVL 175
           L   + V  +       +D  E+       ++ A+S      +P      C L     + 
Sbjct: 138 LRCFQTVTCYQAVINNLEDAHEL-------IDTAISTALKESKPVYISVSCNL---AAIP 187

Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
           H T S       L    S K ++       + ++ A   L +A KP++V G     A+A 
Sbjct: 188 HPTFSREPVPFFLTPRLSNKMSL------EAAVEAAAEFLNKAVKPVLVGGPKLRVAKAC 241

Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP 264
               +L +++G P    P  KGL+P+ HP
Sbjct: 242 KAFVELADASGYPVAVMPSAKGLVPEHHP 270

Length = 578

>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 34/109 (31%), Positives = 47/109 (43%)

Query: 66  AASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL 125
           AA  YG + GKP + L   GPG  +GLA L N      PIV I G    +          
Sbjct: 58  AADGYGRIAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTS 117

Query: 126 DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174
           D     +P S++  ++     V   VA+ ++ A S   G   L +P DV
Sbjct: 118 DIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166

Length = 518

>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 24/252 (9%)

Query: 28  GATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVS 84
           GA  MFG+ G   +P   +      L        +E + G+AA A     G  G+     
Sbjct: 14  GAQEMFGIPGDFALPFFKVIEETGIL--PLHTLSHEPAVGFAADAAARYRGTLGVAAVTY 71

Query: 85  GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG-----DFQELD-QVEAVKPFSKFA 138
           G G  + +  ++       P+V+ISG+    +   G       + LD Q +  K  +   
Sbjct: 72  GAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQ 131

Query: 139 VKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKET 197
               D    P  +A+VL  A    RP   YL++P D+++     +E E +  +       
Sbjct: 132 AVLDDPATAPAEIARVLGSARELSRP--VYLEIPRDMVN-----AEVEPVPDDPAWP--- 181

Query: 198 VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257
                 +++  D+ ++ ++ A  P+++          E ++ +L +  G+P + T MG+G
Sbjct: 182 -VDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRG 240

Query: 258 LLPDTH-PLAAT 268
           LL D   P   T
Sbjct: 241 LLADAPTPPLGT 252

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. Length = 535

>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 19/35 (54%), Positives = 21/35 (60%)

Query: 428 AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
           A T G+MG GL   IAA +  PER VVA  GD  F
Sbjct: 411 APTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCF 445

Length = 557

>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 432 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           G +G GL   + AA+A P+R VVA+ GD  F ++
Sbjct: 49  GGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYT 82

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	482
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	100.0
KOG1185	571	consensus Thiamine pyrophosphate-requiring enzyme	100.0
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	100.0
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	100.0
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	100.0
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	100.0
PRK05858	542	hypothetical protein; Provisional	100.0
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	100.0
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	100.0
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	100.0
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	100.0
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	100.0
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	100.0
PRK11269	591	glyoxylate carboligase; Provisional	100.0
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	100.0
PRK08155	564	acetolactate synthase catalytic subunit; Validated	100.0
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	100.0
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	100.0
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	100.0
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	100.0
PRK06154	565	hypothetical protein; Provisional	100.0
PLN02470	585	acetolactate synthase	100.0
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	100.0
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	100.0
PRK08322	547	acetolactate synthase; Reviewed	100.0
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	100.0
PRK08617	552	acetolactate synthase; Reviewed	100.0
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	100.0
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	100.0
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	100.0
PRK08273	597	thiamine pyrophosphate protein; Provisional	100.0
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	100.0
PRK08611	576	pyruvate oxidase; Provisional	100.0
PRK08199	557	thiamine pyrophosphate protein; Validated	100.0
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	100.0
PRK07524	535	hypothetical protein; Provisional	100.0
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	100.0
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	100.0
PRK06546	578	pyruvate dehydrogenase; Provisional	100.0
PRK09124	574	pyruvate dehydrogenase; Provisional	100.0
PRK06457	549	pyruvate dehydrogenase; Provisional	100.0
PRK06112	578	acetolactate synthase catalytic subunit; Validated	100.0
PRK08327	569	acetolactate synthase catalytic subunit; Validated	100.0
PRK08266	542	hypothetical protein; Provisional	100.0
PRK07064	544	hypothetical protein; Provisional	100.0
PLN02573	578	pyruvate decarboxylase	100.0
PRK07092	530	benzoylformate decarboxylase; Reviewed	100.0
PRK07586	514	hypothetical protein; Validated	100.0
PRK12474	518	hypothetical protein; Provisional	100.0
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	100.0
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	100.0
KOG4166	675	consensus Thiamine pyrophosphate-requiring enzyme	100.0
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	100.0
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	100.0
COG3961	557	Pyruvate decarboxylase and related thiamine pyroph	100.0
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	100.0
COG3960	592	Glyoxylate carboligase [General function predictio	100.0
COG3962	617	Acetolactate synthase [Amino acid transport and me	100.0
KOG1184	561	consensus Thiamine pyrophosphate-requiring enzyme	100.0
COG1165	566	MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car	100.0
cd07039	164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	100.0
cd07037	162	TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-	100.0
PF02776	172	TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter	100.0
cd07038	162	TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom	100.0
cd07035	155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	100.0
cd07034	160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	99.98
cd06586	154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	99.97
TIGR03845	157	sulfopyru_alph sulfopyruvate decarboxylase, alpha	99.95
PF00205	137	TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr	99.93
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	99.92
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.89
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	99.89
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	99.88
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	99.85
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	99.85
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	99.83
cd02005	183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	99.83
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	99.82
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	99.82
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	99.81
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.78
PRK06163	202	hypothetical protein; Provisional	99.74
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	99.7
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	99.69
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	99.68
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.68
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	99.67
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	99.65
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	99.62
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	99.59
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	99.59
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	99.58
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.52
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.48
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	99.48
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	99.46
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.44
TIGR00315	162	cdhB CO dehydrogenase/acetyl-CoA synthase complex,	99.42
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.41
PRK00945	171	acetyl-CoA decarbonylase/synthase complex subunit	99.4
COG4032	172	Predicted thiamine-pyrophosphate-binding protein [	98.98
PRK08659	376	2-oxoglutarate ferredoxin oxidoreductase subunit a	98.94
PRK09627	375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	98.92
PRK07119	352	2-ketoisovalerate ferredoxin reductase; Validated	98.84
TIGR03710	562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	98.77
PRK08366	390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	98.75
PRK08367	394	porA pyruvate ferredoxin oxidoreductase subunit al	98.67
PF01855	230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	98.64
cd02012	255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	98.64
PRK09622	407	porA pyruvate flavodoxin oxidoreductase subunit al	98.63
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	98.58
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	98.54
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	98.37
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	98.32
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	98.24
COG0674	365	PorA Pyruvate:ferredoxin oxidoreductase and relate	98.22
PRK05899	624	transketolase; Reviewed	98.21
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	98.19
PRK13030	1159	2-oxoacid ferredoxin oxidoreductase; Provisional	98.05
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	97.92
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	97.91
PRK09193	1165	indolepyruvate ferredoxin oxidoreductase; Validate	97.88
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	97.75
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	97.74
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	97.71
COG1880	170	CdhB CO dehydrogenase/acetyl-CoA synthase epsilon	97.63
PF02552	167	CO_dh: CO dehydrogenase beta subunit/acetyl-CoA sy	97.11
PRK03363	313	fixB putative electron transfer flavoprotein FixB;	96.87
cd07033	156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	96.87
PRK11916	312	electron transfer flavoprotein subunit YdiR; Provi	96.82
PLN00022	356	electron transfer flavoprotein subunit alpha; Prov	96.79
COG2025	313	FixB Electron transfer flavoprotein, alpha subunit	96.68
COG1029	429	FwdB Formylmethanofuran dehydrogenase subunit B [E	96.6
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	96.48
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	96.4
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	96.26
smart00861	168	Transket_pyr Transketolase, pyrimidine binding dom	96.14
KOG3954	336	consensus Electron transfer flavoprotein, alpha su	96.06
cd01408	235	SIRT1 SIRT1: Eukaryotic group (class1) which inclu	96.05
PF02779	178	Transket_pyr: Transketolase, pyrimidine binding do	95.88
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	95.74
PF13292	270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	95.73
cd02011	227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	95.73
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	95.72
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	95.7
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	95.66
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	95.62
cd07036	167	TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding	95.55
PRK09212	327	pyruvate dehydrogenase subunit beta; Validated	95.3
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	95.3
CHL00144	327	odpB pyruvate dehydrogenase E1 component beta subu	95.21
PRK14138	244	NAD-dependent deacetylase; Provisional	95.21
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	95.13
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	95.13
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	95.03
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	94.99
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	94.96
PLN02790	654	transketolase	94.77
cd02761	415	MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the	94.76
PRK09444	462	pntB pyridine nucleotide transhydrogenase; Provisi	94.72
PF00456	332	Transketolase_N: Transketolase, thiamine diphospha	94.64
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	94.56
PRK00481	242	NAD-dependent deacetylase; Provisional	94.42
PRK12753	663	transketolase; Reviewed	94.34
PRK05333	285	NAD-dependent deacetylase; Provisional	94.33
cd02017	386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	94.31
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	94.26
PTZ00089	661	transketolase; Provisional	94.24
PF02233	463	PNTB: NAD(P) transhydrogenase beta subunit; InterP	94.2
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	94.12
PTZ00182	355	3-methyl-2-oxobutanate dehydrogenase; Provisional	94.12
PLN02790	654	transketolase	94.09
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	94.05
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	94.03
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	94.02
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	93.98
PRK12754	663	transketolase; Reviewed	93.93
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	93.89
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	93.85
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	93.84
cd02005	183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	93.79
PRK08611	576	pyruvate oxidase; Provisional	93.74
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	93.73
COG3959	243	Transketolase, N-terminal subunit [Carbohydrate tr	93.71
PRK05261	785	putative phosphoketolase; Provisional	93.69
PTZ00409	271	Sir2 (Silent Information Regulator) protein; Provi	93.57
COG1013	294	PorB Pyruvate:ferredoxin oxidoreductase and relate	93.41
PTZ00408	242	NAD-dependent deacetylase; Provisional	93.3
PF09364	379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	93.3
PLN02683	356	pyruvate dehydrogenase E1 component subunit beta	93.29
PRK05261	785	putative phosphoketolase; Provisional	93.25
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	93.18
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	93.16
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	93.14
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	93.11
cd01412	224	SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea	93.1
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	93.07
PRK05899	624	transketolase; Reviewed	93.05
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	92.82
PRK12753	663	transketolase; Reviewed	92.82
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	92.78
PRK06163	202	hypothetical protein; Provisional	92.77
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	92.72
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	92.72
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	92.69
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	92.68
PRK08617	552	acetolactate synthase; Reviewed	92.65
PRK08327	569	acetolactate synthase catalytic subunit; Validated	92.61
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	92.55
PRK12754	663	transketolase; Reviewed	92.52
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	92.47
PRK13761	248	hypothetical protein; Provisional	92.38
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	92.36
cd01409	260	SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla	92.31
COG1282	463	PntB NAD/NADP transhydrogenase beta subunit [Energ	92.3
PTZ00089	661	transketolase; Provisional	92.29
PLN02269	362	Pyruvate dehydrogenase E1 component subunit alpha	92.02
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	91.97
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	91.94
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	91.87
PRK06546	578	pyruvate dehydrogenase; Provisional	91.83
PRK09124	574	pyruvate dehydrogenase; Provisional	91.76
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	91.7
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	91.69
PRK06154	565	hypothetical protein; Provisional	91.67
PTZ00410	349	NAD-dependent SIR2; Provisional	91.67
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	91.62
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	91.58
COG3958	312	Transketolase, C-terminal subunit [Carbohydrate tr	91.53
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	91.5
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	91.42
PRK11269	591	glyoxylate carboligase; Provisional	91.42
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	91.41
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	91.3
PRK08322	547	acetolactate synthase; Reviewed	91.26
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	91.25
PRK06112	578	acetolactate synthase catalytic subunit; Validated	91.23
PRK07064	544	hypothetical protein; Provisional	91.06
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	91.05
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	90.94
COG1701	256	Uncharacterized protein conserved in archaea [Func	90.92
PLN02573	578	pyruvate decarboxylase	90.9
PRK08155	564	acetolactate synthase catalytic subunit; Validated	90.81
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	90.8
PRK08266	542	hypothetical protein; Provisional	90.78
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	90.77
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	90.76
PLN02470	585	acetolactate synthase	90.76
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	90.71
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	90.67
PRK07524	535	hypothetical protein; Provisional	90.54
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	90.51
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	90.48
PRK08199	557	thiamine pyrophosphate protein; Validated	90.46
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	90.38
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	90.32
cd02768	386	MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo	90.3
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	90.19
PRK05858	542	hypothetical protein; Provisional	90.0
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	89.98
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	89.94
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	89.93
PRK06457	549	pyruvate dehydrogenase; Provisional	89.86
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	89.73
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	89.59
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	89.52
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	89.52
PRK08273	597	thiamine pyrophosphate protein; Provisional	89.47
PRK07092	530	benzoylformate decarboxylase; Reviewed	89.41
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	89.38
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	89.32
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	89.24
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	89.24
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	89.2
KOG2682	314	consensus NAD-dependent histone deacetylases and c	88.87
KOG1905	353	consensus Class IV sirtuins (SIR2 family) [Chromat	88.86
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	88.81
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	88.79
TIGR00300	407	conserved hypothetical protein TIGR00300. All memb	88.76
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	88.73
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	88.64
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	88.62
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	88.61
cd02773	375	MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The s	88.41
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	87.9
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	87.85
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	87.76
cd01410	206	SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla	87.65
COG1071	358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	87.48
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	87.43
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	87.17
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	86.54
TIGR03129	421	one_C_dehyd_B formylmethanofuran dehydrogenase sub	86.15
COG0846	250	SIR2 NAD-dependent protein deacetylases, SIR2 fami	85.99
PRK12474	518	hypothetical protein; Provisional	85.98
PRK07586	514	hypothetical protein; Validated	84.85
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	84.82
cd05569	96	PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of	84.56
PF02006	178	DUF137: Protein of unknown function DUF137; InterP	84.35
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	84.28
cd02750	461	MopB_Nitrate-R-NarG-like Respiratory nitrate reduc	83.44
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	83.29
cd02752	649	MopB_Formate-Dh-Na-like Formate dehydrogenase N, a	82.83
PRK13936	197	phosphoheptose isomerase; Provisional	80.8
cd01407	218	SIR2-fam SIR2 family of proteins includes silent i	80.44
cd02772	414	MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second doma	80.17

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=9.8e-98  Score=778.50  Aligned_cols=448  Identities=31%  Similarity=0.491  Sum_probs=393.5

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      .++++|+|++.|+++||++|||+||+.+++++|+|.+.+|++|.+|||++|++||+||+|+|||||||++|+|||++|++
T Consensus         1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~   80 (550)
T COG0028           1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL   80 (550)
T ss_pred             CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence            47899999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +||++|+.|++|||+|||++++..+|++.||+.|+..+++|++||++++.+++++++.+++||+.|.++|||||||+||.
T Consensus        81 tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~  160 (550)
T COG0028          81 TGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPK  160 (550)
T ss_pred             HHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhccccChhHHHHHHHhhhhhcccccCCCCCH-HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVN-SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      |++.++.+........       .+...+...+ +.+++++++|.+||||+|++|+|+.++++.+++++|||++|+||++
T Consensus       161 Dv~~~~~~~~~~~~~~-------~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~  233 (550)
T COG0028         161 DVLAAEAEEPGPEPAI-------LPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVT  233 (550)
T ss_pred             hHhhcccccccccccc-------cccCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEE
Confidence            9999997653211110       0122233333 8899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |++|||++|++||+|+|..       .+.++++||+||+||++++++.++ + ..|.++.++||||+|+.++++.. +++
T Consensus       234 t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~-~~f~~~~~ii~iDidp~ei~k~~~~~~  311 (550)
T COG0028         234 TLMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-Y-SGFAPPAAIIHIDIDPAEIGKNYPVDV  311 (550)
T ss_pred             ccCcCccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccc-h-hhhCCcCCEEEEeCChHHhCCCCCCCe
Confidence            9999999999999999852       457889999999999999987765 2 33333323999999999997654 599


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV  403 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v  403 (482)
                      .+++|++.+|++|.+.++..      ...|.+.+.+.++++........  ......+.++++.|++.+    ++|.|++
T Consensus       312 ~i~gD~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~v~~~l~~~~----~~daiv~  379 (550)
T COG0028         312 PIVGDAKATLEALLEELKPE------RAAWLEELLEARAAYRDLALEEL--ADDGIKPQYVIKVLRELL----PDDAIVV  379 (550)
T ss_pred             eEeccHHHHHHHHHHhhhhc------chHHHHHHHHHHHhhhhhhhhcc--CCCccCHHHHHHHHHHhC----CCCeEEE
Confidence            99999999999999998642      34688877766655543322111  112236888999999988    8889999


Q ss_pred             eC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          404 SE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       404 ~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +| |.++.|..++ ++...|++|+.++++|+||||+|+|||||++.|+|+||+|+|||||+|++|||||++||++|+++|
T Consensus       380 ~d~G~~~~w~a~~-~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~iv  458 (550)
T COG0028         380 TDVGQHQMWAARY-FDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIV  458 (550)
T ss_pred             eCCcHHHHHHHHh-cccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEE
Confidence            88 6778877665 588899999999999999999999999999999999999999999999999999999999999875

>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=100.00  E-value=5.5e-96  Score=709.68  Aligned_cols=470  Identities=49%  Similarity=0.829  Sum_probs=434.9

Q ss_pred             cccccCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEc
Q 011590            4 SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTV   83 (482)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t   83 (482)
                      .-+++++..++++++.+++.|+++||+|+||+.|.++.++..+.+..||+||.+|||++|+|+|++|+|+|||||||+++
T Consensus         4 ~~~~~~~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVv   83 (571)
T KOG1185|consen    4 LLFKVDKASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVV   83 (571)
T ss_pred             chhcccccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEe
Confidence            44678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           84 SGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        84 ~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      +|||++|+++|++||+.++.|||+|+|..++.+.++|+||++||..+++|+|||+.+++++++++..+++|++.|++|+|
T Consensus        84 sGPGl~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~P  163 (571)
T KOG1185|consen   84 SGPGLTHALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRP  163 (571)
T ss_pred             cCChHHHHHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEcCcchhcc-ccChhHHH---HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHH
Q 011590          164 GGCYLDLPTDVLHQ-TISVSEAE---KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK  239 (482)
Q Consensus       164 gPv~l~iP~dv~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~  239 (482)
                      ||+|+++|.|+... ...+.+..   ..+.     ...++.+.++++.+++++++|++||||++++|.|+.++.+++.|+
T Consensus       164 G~~yvD~P~d~v~~~~~~e~~~~~~~p~~~-----~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~  238 (571)
T KOG1185|consen  164 GPVYVDLPADVVLPSKMVEKEIDVSEPQPP-----IPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLR  238 (571)
T ss_pred             CceEEecccceeeeecccccccccCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHH
Confidence            99999999995443 33332211   1110     112235677889999999999999999999999999999999999


Q ss_pred             HHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590          240 KLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR  319 (482)
Q Consensus       240 ~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~  319 (482)
                      +|.|.+|+|++-|+||||++|++||++++.++..+|++||++|++|+|++|...||.++.|+++.|+|+||.++++++.+
T Consensus       239 ~~Ve~~glPflptpMgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n  318 (571)
T KOG1185|consen  239 KFVETTGLPFLPTPMGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNN  318 (571)
T ss_pred             HHHHhcCCCcccCcccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999654


Q ss_pred             --CCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590          320 --KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS  397 (482)
Q Consensus       320 --~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  397 (482)
                        ++++.|.+|+..++.+|.+.+...+.+-...+.|++.+++..++++.+.++....+..++++.++++.+++.|    |
T Consensus       319 ~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L----~  394 (571)
T KOG1185|consen  319 FVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELL----P  394 (571)
T ss_pred             cCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhc----C
Confidence              7899999999999999999998865555555689999999888888877776666778899999999999999    8


Q ss_pred             -CCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590          398 -PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI  476 (482)
Q Consensus       398 -~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~  476 (482)
                       +|+|+|+||++++..+|+.++.+.|++++..+.||+||.|+++|||||++.|+++|+++.||++|.|+.+|++|++|||
T Consensus       395 ~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR~~  474 (571)
T KOG1185|consen  395 NDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVRYK  474 (571)
T ss_pred             CCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHHhc
Confidence             7889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 011590          477 IMISSI  482 (482)
Q Consensus       477 l~i~~~  482 (482)
                      ||+++|
T Consensus       475 Lpvv~v  480 (571)
T KOG1185|consen  475 LPVVIV  480 (571)
T ss_pred             CCeEEE
Confidence            999875

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=100.00  E-value=1.5e-90  Score=738.98  Aligned_cols=454  Identities=28%  Similarity=0.384  Sum_probs=388.1

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH   90 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N   90 (482)
                      .++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|+|||+||+|+| ||++||++|+|||++|
T Consensus         2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N   81 (588)
T TIGR01504         2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD   81 (588)
T ss_pred             CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence            5789999999999999999999999999999999965 4899999999999999999999999 9999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++||.+++|||+|+|+.++...+++.+|++||..+|+++|||++++.+++++.+.+++|++.|+++|+|||||+|
T Consensus        82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i  161 (588)
T TIGR01504        82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDL  161 (588)
T ss_pred             HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++.++++..... ..+      .+...+.++++.+++++++|.+||||+|++|.|+.++++.++|.+|||++|+||+
T Consensus       162 P~Dv~~~~~~~~~~~-~~~------~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~  234 (588)
T TIGR01504       162 PFDVQVAEIEFDPDT-YEP------LPVYKPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVI  234 (588)
T ss_pred             CcchhhcccCCcccc-ccc------ccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeE
Confidence            999998876531100 000      0112234567899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590          251 PTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P  321 (482)
Q Consensus       251 ~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~  321 (482)
                      ||++|||+||++||+|+|..        .++++++||+||+||++++++.+.++ ..+.++.++||||.|+.++++.+ +
T Consensus       235 tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~-~~~~~~~~~I~id~d~~~i~~~~~~  313 (588)
T TIGR01504       235 PTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSV-DVYTEGRKFVHVDIEPTQIGRVFAP  313 (588)
T ss_pred             EcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccCcc-cccCCCCeEEEeeCCHHHhcCcCCC
Confidence            99999999999999999842        35689999999999999987665433 33566788999999999997655 5


Q ss_pred             ceeEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCC
Q 011590          322 HLGLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA  399 (482)
Q Consensus       322 ~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  399 (482)
                      ++.+++|+..+|++|.+.+......  ......|.+.+.+.++++...    ...++.++++..+++.|++.+    +++
T Consensus       314 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~p~~~~~~l~~~l----~~d  385 (588)
T TIGR01504       314 DLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRK----THFDNVPVKPQRVYEEMNKAF----GRD  385 (588)
T ss_pred             CeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCccc----ccCCCCCcCHHHHHHHHHHhC----CCC
Confidence            9999999999999999876432110  012245665544433222111    111234688999999999998    999


Q ss_pred             cEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          400 PILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       400 ~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      .+++.|++++..+...+|+...|++|+.+++||+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++|||+|+
T Consensus       386 ~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpv  465 (588)
T TIGR01504       386 VCYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPY  465 (588)
T ss_pred             CEEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCe
Confidence            99999955544334456688889999999899999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       466 v~i  468 (588)
T TIGR01504       466 IHV  468 (588)
T ss_pred             EEE
Confidence            875

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=100.00  E-value=1.5e-90  Score=736.94  Aligned_cols=459  Identities=46%  Similarity=0.764  Sum_probs=395.0

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      ++++|+|++.|+++||+||||+||+.++++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus         3 ~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~   82 (554)
T TIGR03254         3 TDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLT   82 (554)
T ss_pred             CcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHH
Confidence            47999999999999999999999999999999888788999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCccc--CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           94 GLSNGMINTWPIVMISGSCDQKD--FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ||++|+.+++|||+|+|+.+...  .+++.+|++||..+|+++|||++++++++++++.+++|++.|+++|||||||+||
T Consensus        83 gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP  162 (554)
T TIGR03254        83 ALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLP  162 (554)
T ss_pred             HHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence            99999999999999999998774  3567899999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.++++..........   .........+++..+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++
T Consensus       163 ~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~t  239 (554)
T TIGR03254       163 AAVLGQTMEAEKAKKTLVK---VVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLP  239 (554)
T ss_pred             HHHhhcccccccccccccc---ccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEE
Confidence            9999988763211000000   0001112345678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEeccHH
Q 011590          252 TPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAK  330 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~D~~  330 (482)
                      |+++||+||++||+++|...++++++||+||++|++++++.++++...|.+++++||||.|+..++..+ +++.+.+|++
T Consensus       240 t~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~  319 (554)
T TIGR03254       240 MSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIG  319 (554)
T ss_pred             cCCcceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHH
Confidence            999999999999999999888999999999999999998777666455667789999999999987654 4999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC--CcEEEeCchh
Q 011590          331 KVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP--APILVSEGAN  408 (482)
Q Consensus       331 ~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~i~v~eg~~  408 (482)
                      .+|++|.+.++....  .....|.+.+.+.++++.............++++..+++.|++.+    ++  +.++++||++
T Consensus       320 ~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~~~ivv~d~~~  393 (554)
T TIGR03254       320 SVVQALLSAAKNGGV--KPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVL----KDNPDIYLVNEGAN  393 (554)
T ss_pred             HHHHHHHHHhhhccc--cchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhc----CCCCCEEEEeCCch
Confidence            999999998864211  123468776655555443222111112335789999999999988    64  6788889877


Q ss_pred             HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          409 TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +.++..++++...|++|+.++++|+|||++|+|||+++| ++++||+|+|||||+|++|||+|++||++|+++|
T Consensus       394 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-~~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~v  466 (554)
T TIGR03254       394 TLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-TGKPVVALEGDSAFGFSGMEVETICRYNLPVCVV  466 (554)
T ss_pred             HHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-CCCcEEEEEcCchhcccHHHHHHHHHcCCCEEEE
Confidence            777777778888999999998999999999999999999 4899999999999999999999999999999865

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=100.00  E-value=8.9e-90  Score=732.72  Aligned_cols=464  Identities=45%  Similarity=0.767  Sum_probs=395.9

Q ss_pred             ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      -..++++++|++.|+++||+||||+||+.++++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus         7 ~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N   86 (569)
T PRK09259          7 LQLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLN   86 (569)
T ss_pred             cCCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence            34569999999999999999999999999999999988788999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCccc--CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKD--FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      +++||++|+.+++|||+|+|+.++..  .+++.+|++||..+|+++|||++++++++++++.+++||+.|+++|||||||
T Consensus        87 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l  166 (569)
T PRK09259         87 GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYL  166 (569)
T ss_pred             HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEE
Confidence            99999999999999999999988764  3567899999999999999999999999999999999999999999999999


Q ss_pred             EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                      +||.|++.++++.......+. .+  ......+.+++..+++++++|.+||||+|++|.|++++++.+++.+|||++|+|
T Consensus       167 ~iP~Dv~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iP  243 (569)
T PRK09259        167 DLPAKVLAQTMDADEALTSLV-KV--VDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIP  243 (569)
T ss_pred             EeCHHHhhCcccccccccccc-cc--cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCC
Confidence            999999998876321100000 00  001123345678899999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEec
Q 011590          249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVG  327 (482)
Q Consensus       249 v~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~  327 (482)
                      |++|+++||+||++||+|+|...++++++||+||+||++++++.++++...|.++.++||||.|+.+++..+ .++.+.+
T Consensus       244 V~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~  323 (569)
T PRK09259        244 FLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVG  323 (569)
T ss_pred             EEecccccccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEec
Confidence            999999999999999999999888899999999999999987765554445666789999999999987654 5899999


Q ss_pred             cHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeCch
Q 011590          328 DAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA  407 (482)
Q Consensus       328 D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~  407 (482)
                      |++.+|++|.+.++....  .....|.+++.+.++++.............++++..+++.|++.+..  ++|.++++||+
T Consensus       324 D~~~~L~~L~~~l~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~--~~d~iv~~~~~  399 (569)
T PRK09259        324 DIGSVMQALLAGLKQNTF--KAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKE--NPDIYLVNEGA  399 (569)
T ss_pred             CHHHHHHHHHHHhhhccc--cchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCC--CCCEEEEeCch
Confidence            999999999998864211  12356877666555544322221111233568889999999999821  23778888888


Q ss_pred             hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          408 NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++.++.+++++...|++++.++++|+|||++|+|||+++| ++++||+++|||||+|++|||+|++||++||++|
T Consensus       400 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~v  473 (569)
T PRK09259        400 NTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVV  473 (569)
T ss_pred             HHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCEEEE
Confidence            7777777777888899999888899999999999999999 5899999999999999999999999999999875

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=100.00  E-value=9.4e-90  Score=732.41  Aligned_cols=457  Identities=24%  Similarity=0.375  Sum_probs=387.8

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      .++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~   82 (572)
T PRK08979          3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT   82 (572)
T ss_pred             cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence            4789999999999999999999999999999999965 589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++||++||.+++|||+|+|++++...+++.+|++||..+|+++|||+.++++++++++.+++|++.|.++++|||||+||
T Consensus        83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP  162 (572)
T PRK08979         83 ITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLP  162 (572)
T ss_pred             HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.++++...  ..+. ........+...++++.+++++++|.+||||+|++|.|++++++.++|.+|||++|+||+|
T Consensus       163 ~Dv~~~~~~~~~--~~~~-~~~~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~t  239 (572)
T PRK08979        163 KDCLNPAILHPY--EYPE-SIKMRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVS  239 (572)
T ss_pred             HhHhhhhhcccc--cCCc-ccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEE
Confidence            999987765310  0000 0000000112234677899999999999999999999999899999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |+++||+||++||+|+|..       .++++++||+||+||++++++.+.+ ...+.++.++||||.|+..+++.+ +++
T Consensus       240 t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~-~~~~~~~~~~i~id~d~~~i~~~~~~~~  318 (572)
T PRK08979        240 TLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNN-LEKYCPNATILHIDIDPSSISKTVRVDI  318 (572)
T ss_pred             cccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCccccCc-hhhcCCCCeEEEEECCHHHhCCccCCce
Confidence            9999999999999999953       4578999999999999998876533 333566789999999999997654 499


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI  401 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  401 (482)
                      .+++|++.+|++|.+.+.+....  ......|.+.+.+++.++...    ......++++.++++.|++.+    +++.+
T Consensus       319 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~~~l----~~d~i  390 (572)
T PRK08979        319 PIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLA----YDKSSERIKPQQVIETLYKLT----NGDAY  390 (572)
T ss_pred             EEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchh----ccCCCCCcCHHHHHHHHHHhc----CCCeE
Confidence            99999999999999887543110  011235766554433322110    111234688888999999988    88999


Q ss_pred             EEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590          402 LVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS  480 (482)
Q Consensus       402 ~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~  480 (482)
                      ++.|+++ ..|. ..+++...|++|+.++++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||||++|||||++
T Consensus       391 vv~d~G~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~  469 (572)
T PRK08979        391 VASDVGQHQMFA-ALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVK  469 (572)
T ss_pred             EEECCcHHHHHH-HHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeE
Confidence            9999655 4554 4566888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 011590          481 SI  482 (482)
Q Consensus       481 ~~  482 (482)
                      +|
T Consensus       470 ~v  471 (572)
T PRK08979        470 II  471 (572)
T ss_pred             EE
Confidence            75

>PRK05858 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-89  Score=726.42  Aligned_cols=452  Identities=30%  Similarity=0.504  Sum_probs=392.6

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      +++++|+|++.|+++||++|||+||+++.++++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus         4 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~   83 (542)
T PRK05858          4 TGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGM   83 (542)
T ss_pred             cCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHH
Confidence            67999999999999999999999999999999999877899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +||++|+.+++|||+|+|+.+....+++.+|++||..+|+++|||++++++++++++.+++|++.|+++|+|||||+||.
T Consensus        84 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~  163 (542)
T PRK05858         84 SAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPM  163 (542)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590          173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT  252 (482)
Q Consensus       173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t  252 (482)
                      |++.++++..... .+.     ......+.++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++|
T Consensus       164 dv~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt  237 (542)
T PRK05858        164 DHAFSMADDDGRP-GAL-----TELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMN  237 (542)
T ss_pred             hhhhccccccccc-ccc-----ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence            9998887642111 000     0011223467789999999999999999999999998899999999999999999999


Q ss_pred             CCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEeccHHH
Q 011590          253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAKK  331 (482)
Q Consensus       253 ~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~D~~~  331 (482)
                      +.+||+||++||+|+|...++++++||+||++|+++++...+++   |.+++++||||.|+..++..+ +++.+.+|++.
T Consensus       238 ~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~  314 (542)
T PRK05858        238 GMGRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV---FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSA  314 (542)
T ss_pred             CCcCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc---cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHH
Confidence            99999999999999999889999999999999999876544332   455689999999999997655 48999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeCch-hHH
Q 011590          332 VLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA-NTM  410 (482)
Q Consensus       332 ~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~-~~~  410 (482)
                      ++++|.+.++..    .....|.+.+.+.++++.............++++.++++.|++.+    |++.+++.|++ +..
T Consensus       315 ~l~~L~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ivv~d~g~~~~  386 (542)
T PRK05858        315 ILSALAGAGGDR----TDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLL----DRDAIVIGDGGDFVS  386 (542)
T ss_pred             HHHHHHHhcccc----cCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhc----CCCeEEEECCcHHHH
Confidence            999999887642    123457766555444432221111122335688889999999988    99999999954 455


Q ss_pred             HHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          411 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |..+ +|+...|++|+.++++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus       387 ~~~~-~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~iv  457 (542)
T PRK05858        387 YAGR-YIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSV  457 (542)
T ss_pred             HHHH-HccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEE
Confidence            5544 5688889999998889999999999999999999999999999999999999999999999999875

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=100.00  E-value=2e-89  Score=731.35  Aligned_cols=459  Identities=25%  Similarity=0.393  Sum_probs=387.4

Q ss_pred             CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      .-..++++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||+
T Consensus        17 ~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~   96 (587)
T PRK06965         17 PAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGV   96 (587)
T ss_pred             CchhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccH
Confidence            3457899999999999999999999999999999999975 579999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      +|+++||++||.+++|||+|+|+.+....+++.+|++||..+|+++|||+.++++++++.+.+++|++.|+++|+|||||
T Consensus        97 ~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l  176 (587)
T PRK06965         97 TNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVV  176 (587)
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                      +||.|++.++++.......+.     +...+...++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+|
T Consensus       177 ~iP~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~p  251 (587)
T PRK06965        177 DIPKDVSKTPCEYEYPKSVEM-----RSYNPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYP  251 (587)
T ss_pred             EeChhhhhChhccccCccccc-----cCCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCC
Confidence            999999988764211000000     000111234678899999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCC-CCCcEEEEeCCchhhcccC
Q 011590          249 FLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVDVCKEEIELRK  320 (482)
Q Consensus       249 v~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~-~~~~ii~id~d~~~~~~~~  320 (482)
                      |++|++|||+||++||+|+|.       ..++++++||+||+||++++++.+ +++..|. +++++||||.|+..+++.+
T Consensus       252 v~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~  330 (587)
T PRK06965        252 VTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVI-GNPAHFASRPRKIIHIDIDPSSISKRV  330 (587)
T ss_pred             EEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCccccc-CChhhcCCCCceEEEEeCCHHHhCCcC
Confidence            999999999999999999985       345789999999999999987654 3222343 3579999999999987654


Q ss_pred             -CceeEeccHHHHHHHHHHhhhcCCCCC--CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590          321 -PHLGLVGDAKKVLEMINKEIKDEPFCL--GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS  397 (482)
Q Consensus       321 -~~~~i~~D~~~~l~~L~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  397 (482)
                       .++.+++|++.+|++|++.++......  .....|.+.+.+++++...    .......++++..+++.|++.+    |
T Consensus       331 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l----~  402 (587)
T PRK06965        331 KVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCL----KYDRESEIIKPQYVVEKLWELT----D  402 (587)
T ss_pred             CCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChh----hccccCCCcCHHHHHHHHHhhC----C
Confidence             499999999999999998875421110  1123465544333322110    1111234688888999999888    9


Q ss_pred             CCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590          398 PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII  477 (482)
Q Consensus       398 ~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l  477 (482)
                      +++|++.|++++..+...+++...|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||++||++
T Consensus       403 ~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r~~l  482 (587)
T PRK06965        403 GDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDT  482 (587)
T ss_pred             CCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCC
Confidence            99999999655443444566888899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 011590          478 MISSI  482 (482)
Q Consensus       478 ~i~~~  482 (482)
                      |+++|
T Consensus       483 pviiv  487 (587)
T PRK06965        483 PVKII  487 (587)
T ss_pred             CeEEE
Confidence            99875

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=100.00  E-value=2.6e-89  Score=727.63  Aligned_cols=451  Identities=27%  Similarity=0.422  Sum_probs=388.3

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      ++++++++|++.|+++||+||||+||+++++|++++.+ ++|++|.+|||++|++||+||+|+||||+||++|+|||++|
T Consensus         8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n   87 (566)
T PRK07282          8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN   87 (566)
T ss_pred             ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence            56799999999999999999999999999999999965 58999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|+++|+|||||+|
T Consensus        88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i  167 (566)
T PRK07282         88 AITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDL  167 (566)
T ss_pred             HHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++.++++.......+.     ....+...+++..+++++++|.+|+||+|++|.|++++++.+++++|||++|+||+
T Consensus       168 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~  242 (566)
T PRK07282        168 PKDVSALETDFIYDPEVNL-----PSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVV  242 (566)
T ss_pred             Chhhhhhhhcccccccccc-----cCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEE
Confidence            9999988865211000000     00112223567789999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590          251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH  322 (482)
Q Consensus       251 ~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~  322 (482)
                      +|+++||+||++||+|+|.       ..++++++||+||+||++++++.++ .+..|.++.++||||.|+.++++.+ ++
T Consensus       243 tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~-~~~~~~~~~~~i~id~d~~~i~~~~~~~  321 (566)
T PRK07282        243 TTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTG-NPKTFAKNAKVAHIDIDPAEIGKIIKTD  321 (566)
T ss_pred             eccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC-ChhhcCCCCeEEEEECCHHHhCCCCCCC
Confidence            9999999999999999984       3457899999999999999877543 3334666789999999999997655 49


Q ss_pred             eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEE
Q 011590          323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPIL  402 (482)
Q Consensus       323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~  402 (482)
                      +.+++|+..+|++|.+.++..    .....|.+.+.+.+.++..     ......++++.++++.|++.+    ++++++
T Consensus       322 ~~i~~D~~~~L~~L~~~l~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~l~~~~----~~~~iv  388 (566)
T PRK07282        322 IPVVGDAKKALQMLLAEPTVH----NNTEKWIEKVTKDKNRVRS-----YDKKERVVQPQAVIERIGELT----NGDAIV  388 (566)
T ss_pred             eEEecCHHHHHHHHHHhhccc----CChHHHHHHHHHHHHhchh-----ccCcCCCcCHHHHHHHHHhhc----CCCeEE
Confidence            999999999999999887532    1234576555433332210     111234688889999999888    889999


Q ss_pred             EeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590          403 VSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       403 v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~  481 (482)
                      +.|+++ ..|. ..+|+...|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++
T Consensus       389 v~d~G~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~  467 (566)
T PRK07282        389 VTDVGQHQMWA-AQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKV  467 (566)
T ss_pred             EECCcHHHHHH-HHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEE
Confidence            999554 4454 44678888999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 011590          482 I  482 (482)
Q Consensus       482 ~  482 (482)
                      |
T Consensus       468 v  468 (566)
T PRK07282        468 V  468 (566)
T ss_pred             E
Confidence            5

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=100.00  E-value=4.3e-89  Score=728.67  Aligned_cols=462  Identities=26%  Similarity=0.370  Sum_probs=388.3

Q ss_pred             cCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590            8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP   86 (482)
Q Consensus         8 ~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp   86 (482)
                      .|+...++++|+|++.|+++||+||||+||+++++|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+||
T Consensus         5 ~~~~~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GP   84 (595)
T PRK09107          5 SHMPRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGP   84 (595)
T ss_pred             hhhhhhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence            355577899999999999999999999999999999999965 5899999999999999999999999999999999999


Q ss_pred             hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590           87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC  166 (482)
Q Consensus        87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv  166 (482)
                      |++|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++.+.+++|++.|+++|+|||
T Consensus        85 G~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV  164 (595)
T PRK09107         85 GATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPV  164 (595)
T ss_pred             cHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccc--cHHHHHHHHHH
Q 011590          167 YLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR--AEGELKKLVES  244 (482)
Q Consensus       167 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~--~~~~l~~lae~  244 (482)
                      ||+||.|++.++++.......+.   ... ..+.+.++++.+++++++|.+|+||+|++|.|+.+++  +.+++++|||+
T Consensus       165 ~l~iP~Dv~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~  240 (595)
T PRK09107        165 VVDIPKDVQFATGTYTPPQKAPV---HVS-YQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVEL  240 (595)
T ss_pred             EEecCCChhhccccccccccccc---ccC-CCCCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHHH
Confidence            99999999877654211000000   000 1122345678899999999999999999999998875  88999999999


Q ss_pred             hCCcEeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhc
Q 011590          245 TGIPFLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE  317 (482)
Q Consensus       245 ~g~pv~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~  317 (482)
                      +|+||++|+++||+||++||+|+|..       .++++++||+||+||++++++.+. ++..|.++.++||||.|+..++
T Consensus       241 lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~-~~~~~~~~~~~I~id~d~~~i~  319 (595)
T PRK09107        241 TGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITG-RLDAFSPNSKKIHIDIDPSSIN  319 (595)
T ss_pred             HCCCEEECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCccccC-chhhcCCCCeEEEEECCHHHhC
Confidence            99999999999999999999999853       457889999999999999876543 3334566788999999999997


Q ss_pred             ccC-CceeEeccHHHHHHHHHHhhhcCCCCC--CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhc
Q 011590          318 LRK-PHLGLVGDAKKVLEMINKEIKDEPFCL--GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILG  394 (482)
Q Consensus       318 ~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  394 (482)
                      +.+ .++.+++|++.+|++|.+.+++.....  .....|.+.+.+++.....    .......++++..+++.|++++  
T Consensus       320 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~l~~~l--  393 (595)
T PRK09107        320 KNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSL----AYTPSDDVIMPQYAIQRLYELT--  393 (595)
T ss_pred             CCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChh----hccCCCCCcCHHHHHHHHHHhC--
Confidence            654 499999999999999999876431110  1123465444333222110    1111234688888999999888  


Q ss_pred             cCC-CCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHH
Q 011590          395 VGS-PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWL  473 (482)
Q Consensus       395 ~~~-~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~  473 (482)
                        + +|.+++.|+++...+...+|+..+|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||++
T Consensus       394 --~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~  471 (595)
T PRK09107        394 --KGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAV  471 (595)
T ss_pred             --CCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHH
Confidence              6 4778888855544444556788899999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcccccC
Q 011590          474 SCIIMISSI  482 (482)
Q Consensus       474 r~~l~i~~~  482 (482)
                      ||++|+++|
T Consensus       472 r~~lpvi~v  480 (595)
T PRK09107        472 QYNLPVKIF  480 (595)
T ss_pred             HhCCCeEEE
Confidence            999999875

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=100.00  E-value=5.1e-89  Score=727.60  Aligned_cols=457  Identities=24%  Similarity=0.376  Sum_probs=386.8

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      .++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|++||+||+|+||||+||++|+|||++|+
T Consensus         3 ~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~   82 (574)
T PRK07979          3 MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA   82 (574)
T ss_pred             cccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence            4789999999999999999999999999999999976 589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++||++|+.+++|||+|+|+.+....+++.+|++|+..+++++|||+.++++++++.+.+++||+.|.++|+|||||+||
T Consensus        83 l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP  162 (574)
T PRK07979         83 ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLP  162 (574)
T ss_pred             HHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.++++...  ..+. ........+...++++.+++++++|.+||||+|++|.|++++++.++|.+|||++|+||+|
T Consensus       163 ~Dv~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~t  239 (574)
T PRK07979        163 KDILNPANKLPY--VWPE-SVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVS  239 (574)
T ss_pred             hhhhhhhhcccc--ccCc-ccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEE
Confidence            999876544210  0000 0000000112234678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |+++||+||++||+|+|..       .++++++||+||+||++++++.+.++ ..|.+++++||||.|+.++++.+ +++
T Consensus       240 t~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~i~~~~~~~~  318 (574)
T PRK07979        240 SLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNL-AKYCPNATVLHIDIDPTSISKTVTADI  318 (574)
T ss_pred             ccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCCh-hhcCCCCeEEEEECCHHHhCCcccCCe
Confidence            9999999999999999853       56789999999999999988765333 34566789999999999997654 599


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCCC--CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFCL--GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI  401 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  401 (482)
                      .+++|++.+|++|++.+.+.....  .....|.+.+.+++.+...    .......++++.++++.|++.+    ++++|
T Consensus       319 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l----~~d~i  390 (574)
T PRK07979        319 PIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCL----KYDTHSEKIKPQAVIETLWRLT----KGDAY  390 (574)
T ss_pred             EEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChh----hccCCCCCcCHHHHHHHHHhhc----CCCEE
Confidence            999999999999998876421110  1123465544333222110    1111234688888999999888    88999


Q ss_pred             EEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590          402 LVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS  480 (482)
Q Consensus       402 ~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~  480 (482)
                      ++.|+++ ..|.. .+|+...|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||||++||+||++
T Consensus       391 vv~d~G~~~~~~~-~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~  469 (574)
T PRK07979        391 VTSDVGQHQMFAA-LYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVL  469 (574)
T ss_pred             EEeCCcHHHHHHH-HhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeE
Confidence            9999554 55554 456888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 011590          481 SI  482 (482)
Q Consensus       481 ~~  482 (482)
                      +|
T Consensus       470 iv  471 (574)
T PRK07979        470 VL  471 (574)
T ss_pred             EE
Confidence            75

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=100.00  E-value=1e-88  Score=725.98  Aligned_cols=454  Identities=25%  Similarity=0.356  Sum_probs=384.0

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      +|+++++|++.|+++||++|||+||+.+++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus         1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~   80 (579)
T TIGR03457         1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV   80 (579)
T ss_pred             CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence            47999999999999999999999999999999999878899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +||++||.+++|||+|+|+.+....+++.+|++||..+|+++|||++++++++++++.+++|++.|.++| |||||+||.
T Consensus        81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GPV~l~iP~  159 (579)
T TIGR03457        81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPR  159 (579)
T ss_pred             HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CCEEEEeCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986 999999999


Q ss_pred             chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590          173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT  252 (482)
Q Consensus       173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t  252 (482)
                      |++.++++....  .+.       ......+++..+++++++|.+||||+|++|+|++++++.++|.+|||++|+||+||
T Consensus       160 Dv~~~~~~~~~~--~~~-------~~~~~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt  230 (579)
T TIGR03457       160 DYFYGEIDVEIP--RPV-------RLDRGAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNS  230 (579)
T ss_pred             chhhhhcccccC--ccc-------ccCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEc
Confidence            999888763211  010       11223456778999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccC--CCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590          253 PMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFG--EPPKWSKDVKFVLVDVCKEEIELRK-PH  322 (482)
Q Consensus       253 ~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g--~~~~~~~~~~ii~id~d~~~~~~~~-~~  322 (482)
                      +.+||+||++||+++|.       ..++++++||+||+||++++++.++.  ....|.+++++||||.|+..+++.+ ++
T Consensus       231 ~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~  310 (579)
T TIGR03457       231 YLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVT  310 (579)
T ss_pred             ccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCC
Confidence            99999999999999995       24578999999999999998654321  1123566789999999999997655 59


Q ss_pred             eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHh---------------hhcCCCCCCcccHHHH
Q 011590          323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQ---------------LAKDVVPFNFMTPMRI  387 (482)
Q Consensus       323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~  387 (482)
                      +.+++|++.+|++|.+.+.....+. ....|.+.+.+.+..|...+...               ...+..++++.++++.
T Consensus       311 ~~i~~D~~~~l~~L~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  389 (579)
T TIGR03457       311 VGICGDAKAAAAEILQRLAGKAGDA-NRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRE  389 (579)
T ss_pred             eeEecCHHHHHHHHHHhhhhccccc-chhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHH
Confidence            9999999999999999885421100 11123222221111221111100               0112346888889999


Q ss_pred             HHHHHhccCCCCcEEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCCh
Q 011590          388 IRDAILGVGSPAPILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSA  466 (482)
Q Consensus       388 l~~~l~~~~~~~~i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~  466 (482)
                      |++.+    ++++|++.|+++ ..|. ..+|+...|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++
T Consensus       390 l~~~l----~~~~iv~~d~G~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~  464 (579)
T TIGR03457       390 LEKAM----PEDAIVSTDIGNINSVA-NSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSM  464 (579)
T ss_pred             HHHhC----CCCeEEEECCchhHHHH-HHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccH
Confidence            99888    999999999554 4554 45668889999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCcccccC
Q 011590          467 VEVEVWLSCIIMISSI  482 (482)
Q Consensus       467 ~eL~T~~r~~l~i~~~  482 (482)
                      |||||++||++|+++|
T Consensus       465 ~eL~Tavr~~lpvi~v  480 (579)
T TIGR03457       465 NEIMTAVRHDIPVTAV  480 (579)
T ss_pred             HHHHHHHHhCCCeEEE
Confidence            9999999999999765

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=100.00  E-value=9e-89  Score=722.76  Aligned_cols=451  Identities=24%  Similarity=0.391  Sum_probs=389.5

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      ..++++|+|++.|+++||+||||+||+.+++|++++.+++|++|.++||++|++||+||+|+||||+||++|+|||++|+
T Consensus        13 ~~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~   92 (570)
T PRK06725         13 EEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNL   92 (570)
T ss_pred             ccccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence            46899999999999999999999999999999999987889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++||++||.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++.+.+++|++.|+++|+|||||+||
T Consensus        93 ~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP  172 (570)
T PRK06725         93 VTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIP  172 (570)
T ss_pred             HHHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.++++.......+.     ....+.+.++++.+++++++|.+||||+|++|.|+.++++.++|.+|||++|+||+|
T Consensus       173 ~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~t  247 (570)
T PRK06725        173 KDVQNEKVTSFYNEVVEI-----PGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVS  247 (570)
T ss_pred             cchhhcccccccCccccc-----ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEE
Confidence            999987765211000000     000122346778899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |+++||+||++||+++|..       .++++++||+||+||++++++.+.+ ...|.+++++||||.|+..++..+ .++
T Consensus       248 t~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~-~~~~~~~~~~i~id~d~~~i~~~~~~~~  326 (570)
T PRK06725        248 TLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGK-LELFSPHSKKVHIDIDPSEFHKNVAVEY  326 (570)
T ss_pred             CCccCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCc-ccccCCCCeEEEEeCCHHHhCCCCCCCe
Confidence            9999999999999999853       4578999999999999998876533 333566778999999999997654 499


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV  403 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v  403 (482)
                      .+++|+..+|++|.+.++..     ....|.+.+.++++++....    .....++++..+++.|++.+    |++.|++
T Consensus       327 ~i~gD~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~l----~~d~iiv  393 (570)
T PRK06725        327 PVVGDVKKALHMLLHMSIHT-----QTDEWLQKVKTWKEEYPLSY----KQKESELKPQHVINLVSELT----NGEAIVT  393 (570)
T ss_pred             EEecCHHHHHHHHHHhcccc-----CcHHHHHHHHHHHHhChhhh----cccCCCcCHHHHHHHHHhhC----CCCcEEE
Confidence            99999999999998877532     23457665544443322111    11234688888999999888    9999999


Q ss_pred             eCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          404 SEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       404 ~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      .|+++ ..|. ..+++...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|+.|||+|++||++|+++|
T Consensus       394 ~d~g~~~~~~-~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~v  472 (570)
T PRK06725        394 TEVGQHQMWA-AHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVF  472 (570)
T ss_pred             eCCcHHHHHH-HHhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEE
Confidence            99654 4544 445688889999999999999999999999999999999999999999999999999999999999865

>PRK11269 glyoxylate carboligase; Provisional

Probab=100.00  E-value=1.4e-88  Score=726.11  Aligned_cols=453  Identities=28%  Similarity=0.393  Sum_probs=387.8

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH   90 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N   90 (482)
                      .++++++|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|+|||+||+|+| |||+||++|+|||++|
T Consensus         3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N   82 (591)
T PRK11269          3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD   82 (591)
T ss_pred             cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence            4799999999999999999999999999999999975 4799999999999999999999999 9999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++|+++||.+++|||+|+|++++...+++.+|++||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+|
T Consensus        83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i  162 (591)
T PRK11269         83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDL  162 (591)
T ss_pred             HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++.++++.......+       .+...+.++++.+++++++|.+||||+|++|.|+.++++.+++.+|||++|+||+
T Consensus       163 P~Dv~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~  235 (591)
T PRK11269        163 PFDVQVAEIEFDPDTYEP-------LPVYKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVI  235 (591)
T ss_pred             Chhhhhcccccccccccc-------cccCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeE
Confidence            999998776532100000       0112334577889999999999999999999999989999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590          251 PTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P  321 (482)
Q Consensus       251 ~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~  321 (482)
                      +|+.+||+||++||+++|..        .++++++||+||+||++++++.+.+ +..|.++.++||||.|+..+++.+ +
T Consensus       236 tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~i~Vd~d~~~~~~~~~~  314 (591)
T PRK11269        236 PTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGS-VEVYTKGRKFVHVDIEPTQIGRVFGP  314 (591)
T ss_pred             ecccccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCccccCc-hhhcCCCCeEEEeeCCHHHhCCCCCC
Confidence            99999999999999999842        3467899999999999998866533 333566789999999999987654 5


Q ss_pred             ceeEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCC
Q 011590          322 HLGLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA  399 (482)
Q Consensus       322 ~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  399 (482)
                      ++.+++|+..+|++|.+.+++....  ......|.+.+.+.++++...    ....+.++++..+++.|++.+    |++
T Consensus       315 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~~l----~~d  386 (591)
T PRK11269        315 DLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRK----THFDNVPIKPQRVYEEMNKAF----GRD  386 (591)
T ss_pred             CeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhh----ccCCCCCcCHHHHHHHHHHhc----CCC
Confidence            9999999999999999887542100  012345766554443332111    111234688889999999988    999


Q ss_pred             cEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcc
Q 011590          400 PILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIM  478 (482)
Q Consensus       400 ~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~  478 (482)
                      ++++.|++ +..|+ ..+++...|+.|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|
T Consensus       387 ~ivv~d~g~~~~~~-~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lp  465 (591)
T PRK11269        387 TCYVSTIGLSQIAA-AQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLP  465 (591)
T ss_pred             cEEEECCcHHHHHH-HHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCC
Confidence            99999954 45555 44567778899999888999999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q 011590          479 ISSI  482 (482)
Q Consensus       479 i~~~  482 (482)
                      +++|
T Consensus       466 v~~v  469 (591)
T PRK11269        466 YIHV  469 (591)
T ss_pred             eEEE
Confidence            9875

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=100.00  E-value=2e-88  Score=721.15  Aligned_cols=450  Identities=26%  Similarity=0.401  Sum_probs=385.6

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      .+++++|+|++.|+++||++|||+||+++++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~   85 (561)
T PRK06048          6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNL   85 (561)
T ss_pred             ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHH
Confidence            45899999999999999999999999999999999987889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++||++||.+++|||+|+|+++....+++.+|++||..+|+++|||++++++++++.+.+++|++.|.++|+|||||+||
T Consensus        86 ~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP  165 (561)
T PRK06048         86 VTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLP  165 (561)
T ss_pred             HHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.++++.......+.     ....+...++++.+++++++|.+||||+|++|.|++++++.+++++|||++|+||+|
T Consensus       166 ~dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~t  240 (561)
T PRK06048        166 KDVTTAEIDFDYPDKVEL-----RGYKPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTT  240 (561)
T ss_pred             hhhhhcccccccCccccc-----ccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEE
Confidence            999987765211000000     001122235677899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |+++||+||++||+++|..       .++++++||+||+||+++++..+. +...+.++.++||||.|+.+++..+ +++
T Consensus       241 t~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~I~id~d~~~~~~~~~~~~  319 (561)
T PRK06048        241 TLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTG-KLASFAPNAKIIHIDIDPAEISKNVKVDV  319 (561)
T ss_pred             ccccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC-ChhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence            9999999999999999853       467899999999999999876543 3334566789999999999987554 599


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV  403 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v  403 (482)
                      .+++|+..+|++|++.+...     ....|.+.+.+++++...    .......++++..+++.|++.+    | +.+++
T Consensus       320 ~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~l~~~~----p-~~iiv  385 (561)
T PRK06048        320 PIVGDAKQVLKSLIKYVQYC-----DRKEWLDKINQWKKEYPL----KYKEREDVIKPQYVIEQIYELC----P-DAIIV  385 (561)
T ss_pred             EEEeCHHHHHHHHHHhcccc-----CcHHHHHHHHHHHHhChh----hccCCCCCcCHHHHHHHHHhhC----C-CcEEE
Confidence            99999999999999987532     234576655443332111    1111234688888888888877    7 68888


Q ss_pred             eCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          404 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       404 ~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      .|++ +..|.. .+++...|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||++|||+|+++|
T Consensus       386 ~d~g~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~v  464 (561)
T PRK06048        386 TEVGQHQMWAA-QYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVA  464 (561)
T ss_pred             EcCcHHHHHHH-HhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEE
Confidence            8854 455554 45688888999999999999999999999999999999999999999999999999999999999875

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=100.00  E-value=1.8e-88  Score=722.46  Aligned_cols=459  Identities=25%  Similarity=0.412  Sum_probs=395.6

Q ss_pred             CCCcccccCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEE
Q 011590            1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGI   79 (482)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v   79 (482)
                      |++++++..++ +++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+||||+|
T Consensus         1 ~~~~~~~~~~~-~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv   79 (564)
T PRK08155          1 MASSGTTSTRK-RFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAV   79 (564)
T ss_pred             CCCCCCCccCC-cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeE
Confidence            77787776544 5799999999999999999999999999999999975 489999999999999999999999999999


Q ss_pred             EEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhh
Q 011590           80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV  159 (482)
Q Consensus        80 ~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~  159 (482)
                      |++|+|||++|+++||++|+.+++|||+|+|+++....+++.+|++||.++|+++|||++++++++++++.+++|++.|.
T Consensus        80 ~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~  159 (564)
T PRK08155         80 CMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQ  159 (564)
T ss_pred             EEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHH
Q 011590          160 SGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK  239 (482)
Q Consensus       160 ~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~  239 (482)
                      ++|+|||||+||.|++.++++....+ .+.     . ......++++.+++++++|.+||||+|++|.|++++++.+++.
T Consensus       160 ~~~~GPV~i~iP~Dv~~~~~~~~~~~-~~~-----~-~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~  232 (564)
T PRK08155        160 SGRPGPVWIDIPKDVQTAVIELEALP-APA-----E-KDAAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARAR  232 (564)
T ss_pred             cCCCCcEEEEcCHhHHhhhcccccCC-Ccc-----c-cCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHH
Confidence            99999999999999998886532111 000     0 1123345677899999999999999999999999889999999


Q ss_pred             HHHHHhCCcEeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590          240 KLVESTGIPFLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC  312 (482)
Q Consensus       240 ~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d  312 (482)
                      +|||++|+||++|+++||+||++||+|+|..       .++++++||+||++|+++++..+.+ ...|.++.++||||.|
T Consensus       233 ~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~I~id~d  311 (564)
T PRK08155        233 ELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIGK-TEQFCPNAKIIHVDID  311 (564)
T ss_pred             HHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCC-HhhcCCCCeEEEEECC
Confidence            9999999999999999999999999999853       4578999999999999998765533 3335667899999999


Q ss_pred             chhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 011590          313 KEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDA  391 (482)
Q Consensus       313 ~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  391 (482)
                      +..+++.+ +++.+.+|+..+|++|++.++..     ....|.+.+...++++...    ......++++..+++.|++.
T Consensus       312 ~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~v~~~l~~~  382 (564)
T PRK08155        312 RAELGKIKQPHVAIQADVDDVLAQLLPLVEAQ-----PRAEWHQLVADLQREFPCP----IPKADDPLSHYGLINAVAAC  382 (564)
T ss_pred             HHHhCCCcCCCeEEecCHHHHHHHHHHhhccc-----chHHHHHHHHHHHHhChhh----cccCCCCcCHHHHHHHHHHh
Confidence            99997655 49999999999999999877542     2345776655444432211    11123468888899999988


Q ss_pred             HhccCCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHH
Q 011590          392 ILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE  470 (482)
Q Consensus       392 l~~~~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~  470 (482)
                      +    |++.+++.|++ +..|..+ +++...|++|+.++++|+|||++|+|+|+++|.|+++||+++|||||+|++|||+
T Consensus       383 l----~~~~iv~~D~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~  457 (564)
T PRK08155        383 V----DDNAIITTDVGQHQMWTAQ-AYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMA  457 (564)
T ss_pred             C----CCCeEEEECCchHHHHHHH-hccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHH
Confidence            8    99999999955 4555544 5688888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcccccC
Q 011590          471 VWLSCIIMISSI  482 (482)
Q Consensus       471 T~~r~~l~i~~~  482 (482)
                      |++||++|+++|
T Consensus       458 ta~~~~lpvi~v  469 (564)
T PRK08155        458 TAAENQLDVKII  469 (564)
T ss_pred             HHHHhCCCeEEE
Confidence            999999999764

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=100.00  E-value=2.9e-88  Score=721.79  Aligned_cols=460  Identities=23%  Similarity=0.336  Sum_probs=384.6

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      .++++|+|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         3 ~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~   82 (574)
T PRK06466          3 LLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNA   82 (574)
T ss_pred             cccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence            4689999999999999999999999999999999964 589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++||++|+.+++|||+|+|+.++...+++.+|++||..+|+++|||++++.+++++.+.+++|++.|+++|||||||+||
T Consensus        83 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP  162 (574)
T PRK06466         83 ITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIP  162 (574)
T ss_pred             HHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.+..+...  ..+...+ .....+...++++.+++++++|.+||||+|++|.|++++++.++|.+|||++|+||++
T Consensus       163 ~Dv~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~t  239 (574)
T PRK06466        163 KDMTNPAEKFEY--EYPKKVK-LRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTN  239 (574)
T ss_pred             HhHhhhhhcccc--ccCcccc-cccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEE
Confidence            999765432110  0000000 0000111234567899999999999999999999999889999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |+++||+||++||+|+|..       .++++++||+||++|++++++.+. ++..|.++.++||||.|+..++..+ +++
T Consensus       240 t~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~-~~~~~~~~~~vi~id~d~~~i~~~~~~~~  318 (574)
T PRK06466        240 TLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTN-GPAKFCPNAKIIHIDIDPASISKTIKADI  318 (574)
T ss_pred             cCccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCccccC-chhhcCCCCeEEEEECCHHHhCCccCCCe
Confidence            9999999999999999843       457889999999999999876543 3334566789999999999997654 599


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI  401 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  401 (482)
                      .+.+|+..+|++|.+.++.....  ......|.+.+.+++.+.... . ....+..++++.++++.|++.+    |++.|
T Consensus       319 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~l~~~l----~~~~i  392 (574)
T PRK06466        319 PIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLF-P-YDKGDGGIIKPQQVVETLYEVT----NGDAY  392 (574)
T ss_pred             EEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcch-h-cccCCCCCcCHHHHHHHHHhhC----CCCeE
Confidence            99999999999999887542100  011234655544333221100 0 0011234688888999999888    88999


Q ss_pred             EEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590          402 LVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       402 ~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~  481 (482)
                      ++.|+++...+...+|+...|+.|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++|||+|+++
T Consensus       393 v~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~i  472 (574)
T PRK06466        393 VTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKI  472 (574)
T ss_pred             EEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEE
Confidence            99995554334455678888999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 011590          482 I  482 (482)
Q Consensus       482 ~  482 (482)
                      |
T Consensus       473 v  473 (574)
T PRK06466        473 I  473 (574)
T ss_pred             E
Confidence            5

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=100.00  E-value=4.4e-88  Score=724.89  Aligned_cols=457  Identities=26%  Similarity=0.406  Sum_probs=388.8

Q ss_pred             CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590           10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus        10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      .+.+++++++|++.|+++||+||||+||+.+.+++++|.+    .+|++|.+|||++|++||+||+|+||||+||++|+|
T Consensus        15 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~G   94 (616)
T PRK07418         15 TPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSG   94 (616)
T ss_pred             CCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            4457899999999999999999999999999999999964    369999999999999999999999999999999999


Q ss_pred             hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCce
Q 011590           86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGG  165 (482)
Q Consensus        86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gP  165 (482)
                      ||++|+++||++|+.|++|||+|+|+.++...+++.+|++|+..+|+++|||++++++++++++.+++||+.|+++|+||
T Consensus        95 PG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GP  174 (616)
T PRK07418         95 PGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGP  174 (616)
T ss_pred             ccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh
Q 011590          166 CYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST  245 (482)
Q Consensus       166 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~  245 (482)
                      |||+||.|++.++++...........   ......+.++++.+++++++|++||||+|++|.|++++++.++|++|||++
T Consensus       175 v~l~iP~Dv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae~l  251 (616)
T PRK07418        175 VLIDIPKDVGQEEFDYVPVEPGSVKP---PGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKELAERF  251 (616)
T ss_pred             EEEecchhhhhchhcccccCcccccc---CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHHHHHH
Confidence            99999999998876521100000000   001112346778999999999999999999999999889999999999999


Q ss_pred             CCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc
Q 011590          246 GIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL  318 (482)
Q Consensus       246 g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~  318 (482)
                      |+||++|+++||+||++||+|+|.       ..++++++||+||+||+++++..+. ....|.++.++||||.|+.++++
T Consensus       252 ~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~ig~  330 (616)
T PRK07418        252 QIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDDRVTG-KLDEFASRAKVIHIDIDPAEVGK  330 (616)
T ss_pred             CCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccC-ChhhcCCCCeEEEEeCCHHHhCC
Confidence            999999999999999999999984       3567899999999999999876543 33346677899999999999976


Q ss_pred             cC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590          319 RK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS  397 (482)
Q Consensus       319 ~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  397 (482)
                      .+ +++.+.+|++.+|++|++.++..... .....|.+.+.++++++..    .......++++..+++.|++.+    +
T Consensus       331 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~v~~~l~~~~----~  401 (616)
T PRK07418        331 NRRPDVPIVGDVRKVLVKLLERSLEPTTP-PRTQAWLERINRWKQDYPL----VVPPYEGEIYPQEVLLAVRDLA----P  401 (616)
T ss_pred             ccCCCeEEecCHHHHHHHHHHhhhccccc-cchHHHHHHHHHHHHhCcc----cccCCCCCcCHHHHHHHHHhhC----C
Confidence            54 59999999999999999988543111 1234576665544433211    1112235788888999998877    7


Q ss_pred             CCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590          398 PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI  476 (482)
Q Consensus       398 ~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~  476 (482)
                       +.+++.| |.+..|..++ ++ ..|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||++||+
T Consensus       402 -d~i~~~D~G~~~~~~~~~-~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~  478 (616)
T PRK07418        402 -DAYYTTDVGQHQMWAAQF-LR-NGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYG  478 (616)
T ss_pred             -CcEEEECChHHHHHHHHh-hh-cCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhC
Confidence             5888877 5566777665 45 568899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 011590          477 IMISSI  482 (482)
Q Consensus       477 l~i~~~  482 (482)
                      +||++|
T Consensus       479 lpvi~v  484 (616)
T PRK07418        479 INVKTV  484 (616)
T ss_pred             CCeEEE
Confidence            999875

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=100.00  E-value=7.7e-88  Score=715.75  Aligned_cols=442  Identities=24%  Similarity=0.422  Sum_probs=385.9

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      |+++++|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus         1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~   80 (548)
T PRK08978          1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT   80 (548)
T ss_pred             CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence            58999999999999999999999999999999998778999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      |+++|+.+++|||+|+|+++....+++.+|++||..+++++|||+.++++++++++.+++|++.|.++|+|||||+||.|
T Consensus        81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  160 (548)
T PRK08978         81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD  160 (548)
T ss_pred             HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590          174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP  253 (482)
Q Consensus       174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~  253 (482)
                      ++.++++.+. . .+.       ......++++.+++++++|.+||||+|++|.|+..+++.+++++|||++|+||++|+
T Consensus       161 v~~~~~~~~~-~-~~~-------~~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~  231 (548)
T PRK08978        161 IQLAEGELEP-H-LTT-------VENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATL  231 (548)
T ss_pred             hhhccccccc-c-ccc-------cCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcc
Confidence            9988765311 1 000       112334567889999999999999999999999888999999999999999999999


Q ss_pred             CCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeE
Q 011590          254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGL  325 (482)
Q Consensus       254 ~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i  325 (482)
                      ++||+||++||+|+|..       .++++++||+||++|+++++..+ ++...|.++.++||||.|+..+++.+ .++.+
T Consensus       232 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i  310 (548)
T PRK08978        232 KGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVT-GKLNTFAPHAKVIHLDIDPAEINKLRQAHVAL  310 (548)
T ss_pred             ccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCcccc-CCccccCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence            99999999999999853       45788999999999999987543 33444667789999999999997654 59999


Q ss_pred             eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590          326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE  405 (482)
Q Consensus       326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e  405 (482)
                      .+|++.+|++|.+.+.        ...|.+.+.+.++++...    ......++++..+++.|++.+    +++++++.|
T Consensus       311 ~~d~~~~l~~l~~~~~--------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~----~~~~iiv~d  374 (548)
T PRK08978        311 QGDLNALLPALQQPLN--------IDAWRQHCAQLRAEHAWR----YDHPGEAIYAPALLKQLSDRK----PADTVVTTD  374 (548)
T ss_pred             ecCHHHHHHHHHHhcc--------chHHHHHHHHHHHhCchh----ccCCCCCcCHHHHHHHHHHhC----CCCcEEEec
Confidence            9999999999987652        134776665544432211    111234678888899999888    999999999


Q ss_pred             ch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          406 GA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       406 g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++ +..|.. .+++...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||||++||++|+++|
T Consensus       375 ~g~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~iv  451 (548)
T PRK08978        375 VGQHQMWVA-QHMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIV  451 (548)
T ss_pred             CcHHHHHHH-HhcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence            54 455554 45688889999999999999999999999999999999999999999999999999999999999875

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=100.00  E-value=1.5e-87  Score=717.75  Aligned_cols=455  Identities=25%  Similarity=0.379  Sum_probs=385.8

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      .++++++|++.|+++||+||||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus         5 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~   84 (588)
T PRK07525          5 KMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFV   84 (588)
T ss_pred             cccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHH
Confidence            47999999999999999999999999999999999877899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +||++|+.+++|||+|+|+++....+.+.+|++||..+|++++||+.++++++++++.+++|++.|+++ +|||||+||.
T Consensus        85 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~iP~  163 (588)
T PRK07525         85 TAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINIPR  163 (588)
T ss_pred             HHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEcCh
Confidence            999999999999999999999999999999999999999999999999999999999999999999998 4999999999


Q ss_pred             chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590          173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT  252 (482)
Q Consensus       173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t  252 (482)
                      |++.++++... .. +.       ....+.+++..+++++++|.+||||+|++|.|++++++.++|++|||++|+||+||
T Consensus       164 Dv~~~~~~~~~-~~-~~-------~~~~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT  234 (588)
T PRK07525        164 DYFYGVIDVEI-PQ-PV-------RLERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACG  234 (588)
T ss_pred             hHhhhhccccc-Cc-cc-------cCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEc
Confidence            99988876321 10 00       11233457788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccC--CCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590          253 PMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFG--EPPKWSKDVKFVLVDVCKEEIELRK-PH  322 (482)
Q Consensus       253 ~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g--~~~~~~~~~~ii~id~d~~~~~~~~-~~  322 (482)
                      +++||+||++||+++|.       ..++++++||+||+||++++++.++.  ....|++++++||||.|+..++..+ .+
T Consensus       235 ~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~  314 (588)
T PRK07525        235 YLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVS  314 (588)
T ss_pred             ccccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCC
Confidence            99999999999999984       34578999999999999998754421  1234667789999999999987655 48


Q ss_pred             eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHh---h------------hcCCCCCCcccHHHH
Q 011590          323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQ---L------------AKDVVPFNFMTPMRI  387 (482)
Q Consensus       323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~  387 (482)
                      +.+++|++.+|++|.+.+.+.......+..|.+.+.+.+..|...+...   .            .....++++.++++.
T Consensus       315 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  394 (588)
T PRK07525        315 VGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALRE  394 (588)
T ss_pred             ceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHHHH
Confidence            9999999999999999886421110112234333322222222111110   0            011246888899999


Q ss_pred             HHHHHhccCCCCcEEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCCh
Q 011590          388 IRDAILGVGSPAPILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSA  466 (482)
Q Consensus       388 l~~~l~~~~~~~~i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~  466 (482)
                      |++.+    |+++|++.|+++ ..|. ..+++...|++|+.++++|+|||++|+|||++++.|+|+||+|+|||||+|++
T Consensus       395 l~~~l----~~d~ivv~d~G~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~~  469 (588)
T PRK07525        395 IQKAL----PEDAIVSTDIGNNCSIA-NSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISM  469 (588)
T ss_pred             HHHhC----CCCcEEEECCcccHHHH-HHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhccH
Confidence            99998    999999999554 5554 45668889999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCcccccC
Q 011590          467 VEVEVWLSCIIMISSI  482 (482)
Q Consensus       467 ~eL~T~~r~~l~i~~~  482 (482)
                      |||||++||++|+++|
T Consensus       470 ~el~Ta~~~~lpv~iv  485 (588)
T PRK07525        470 NEVMTAVRHNWPVTAV  485 (588)
T ss_pred             HHHHHHHHhCCCeEEE
Confidence            9999999999998765

>PRK06154 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-87  Score=711.27  Aligned_cols=452  Identities=23%  Similarity=0.358  Sum_probs=381.9

Q ss_pred             ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh--CCcEEEEEcCChhh
Q 011590           11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT--GKPGILLTVSGPGC   88 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t--gk~~v~~~t~GpG~   88 (482)
                      ...++++|+|++.|+++||++|||+||   .++++++.+.+|++|.+|||++|+|||+||+|+|  |||+||++|+|||+
T Consensus        17 ~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~   93 (565)
T PRK06154         17 AKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGA   93 (565)
T ss_pred             cCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCccH
Confidence            346799999999999999999999995   4899999878899999999999999999999999  49999999999999


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      +|+++||++|+.+++|||+|+|+.+....+.+  +.+|+..+|+++|||+.++.+++++++.+++||+.|+++|+|||||
T Consensus        94 ~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l  171 (565)
T PRK06154         94 ENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVL  171 (565)
T ss_pred             HHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence            99999999999999999999999987765543  3578899999999999999999999999999999999999999999


Q ss_pred             EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                      +||.|++.++++.......+.       ......++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+|
T Consensus       172 ~iP~Dv~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~P  244 (565)
T PRK06154        172 ELPVDVLAEELDELPLDHRPS-------RRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELLEIP  244 (565)
T ss_pred             ecchHHhhhhcccccccccCC-------CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCC
Confidence            999999988765311100110       1223356778899999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-
Q 011590          249 FLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-  320 (482)
Q Consensus       249 v~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-  320 (482)
                      |+||+.+||+||++||+|+|.       ..++++++||+||+||++++++. +++  .|+++.++||||.|+.++++.+ 
T Consensus       245 V~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~~-~~~--~~~~~~~vI~id~d~~~~~~~~~  321 (565)
T PRK06154        245 VMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSY-YGL--PMPEGKTIIHSTLDDADLNKDYP  321 (565)
T ss_pred             EEECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCcccc-cCc--cCCCCCeEEEEECCHHHhccccC
Confidence            999999999999999999984       34578999999999999998753 332  2666789999999999997655 


Q ss_pred             CceeEeccHHHHHHHHHHhhhcCCCCC-CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC-C
Q 011590          321 PHLGLVGDAKKVLEMINKEIKDEPFCL-GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS-P  398 (482)
Q Consensus       321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~  398 (482)
                      +++.+.+|+..+|++|.+.++...... .....|.+.+.+.++++.............++++..+++.|++.+    + +
T Consensus       322 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l----~~~  397 (565)
T PRK06154        322 IDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAV----DIK  397 (565)
T ss_pred             CCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhc----CCC
Confidence            499999999999999999887532111 113468776665555443222221122345789989999999888    7 4


Q ss_pred             CcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590          399 APILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII  477 (482)
Q Consensus       399 ~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l  477 (482)
                      |.|++.|++ +..|. ..+|+...|++|+.++++|+|||++|+|||+++|.|+|+||+++|||||+|++|||||++|||+
T Consensus       398 d~iv~~D~G~~~~~~-~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~l  476 (565)
T PRK06154        398 TVIITHDAGSPRDQL-SPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRERI  476 (565)
T ss_pred             CEEEEECCcccHHHH-HHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHHhCC
Confidence            788888854 45554 4456888899999988899999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 011590          478 MISSI  482 (482)
Q Consensus       478 ~i~~~  482 (482)
                      ||++|
T Consensus       477 pi~~v  481 (565)
T PRK06154        477 PILTI  481 (565)
T ss_pred             CeEEE
Confidence            99875

>PLN02470 acetolactate synthase

Probab=100.00  E-value=1.2e-87  Score=718.06  Aligned_cols=460  Identities=23%  Similarity=0.380  Sum_probs=385.7

Q ss_pred             cCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590            8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP   86 (482)
Q Consensus         8 ~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp   86 (482)
                      .+....++++|+|++.|+++||+||||+||+++++|+++|.+ ++|++|.+|||++|+|||+||+|+|||++||++|+||
T Consensus         7 ~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GP   86 (585)
T PLN02470          7 FAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGP   86 (585)
T ss_pred             CCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence            344556799999999999999999999999999999999965 4799999999999999999999999999999999999


Q ss_pred             hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590           87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC  166 (482)
Q Consensus        87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv  166 (482)
                      |++|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++.+.+++|++.|.++|+|||
T Consensus        87 G~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV  166 (585)
T PLN02470         87 GATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPV  166 (585)
T ss_pred             cHHHHHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590          167 YLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG  246 (482)
Q Consensus       167 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g  246 (482)
                      ||+||.|++.+++........+. .  .........++++.+++++++|.+|+||+|++|.|+.  ++.++|++|||++|
T Consensus       167 ~l~iP~Dv~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a~~~l~~lae~~~  241 (585)
T PLN02470        167 LVDIPKDIQQQLAVPNWNQPMKL-P--GYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NSSEELREFVELTG  241 (585)
T ss_pred             EEEecCchhhhhccccccccccc-c--ccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hhHHHHHHHHHHhC
Confidence            99999999987753210000000 0  0000112235678899999999999999999999986  56789999999999


Q ss_pred             CcEeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590          247 IPFLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR  319 (482)
Q Consensus       247 ~pv~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~  319 (482)
                      +||++|+++||+||++||+++|..       .++++++||+||+||+++++..+ ++...|.+..++||||.|+.++++.
T Consensus       242 ~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~-~~~~~~~~~~~~I~id~d~~~i~~~  320 (585)
T PLN02470        242 IPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVT-GKLEAFASRASIVHIDIDPAEIGKN  320 (585)
T ss_pred             CCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCccccc-CChhhcCCCCeEEEEECCHHHhCCC
Confidence            999999999999999999999853       45789999999999999987654 3333355678899999999999765


Q ss_pred             C-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590          320 K-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP  398 (482)
Q Consensus       320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  398 (482)
                      + +++.+++|+..+|++|.+.++...........|.+.+.+.++++...    .+....++++..+++.|++++    |+
T Consensus       321 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~~~----~~  392 (585)
T PLN02470        321 KQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLS----YPTFGDAIPPQYAIQVLDELT----DG  392 (585)
T ss_pred             cCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhChhc----ccCCCCCcCHHHHHHHHHhhC----CC
Confidence            5 49999999999999999987643110011245765554443332111    111224688888999999888    88


Q ss_pred             CcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590          399 APILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII  477 (482)
Q Consensus       399 ~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l  477 (482)
                      ++|++.|++ +..|..+ +|+...|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||||++||++
T Consensus       393 d~iv~~d~G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l  471 (585)
T PLN02470        393 NAIISTGVGQHQMWAAQ-WYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENL  471 (585)
T ss_pred             CEEEEECCcHHHHHHHH-hcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCC
Confidence            999999854 4555544 56888899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 011590          478 MISSI  482 (482)
Q Consensus       478 ~i~~~  482 (482)
                      |+++|
T Consensus       472 ~v~iv  476 (585)
T PLN02470        472 PVKIM  476 (585)
T ss_pred             CeEEE
Confidence            99765

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=100.00  E-value=1.4e-87  Score=714.90  Aligned_cols=453  Identities=27%  Similarity=0.417  Sum_probs=386.8

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      +++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.++||++|++||+||+|+||||+||++|+|||++|+
T Consensus         2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~   81 (563)
T PRK08527          2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA   81 (563)
T ss_pred             CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence            4789999999999999999999999999999999975 589999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++||++|+.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++.+.+++|++.|+++|||||||+||
T Consensus        82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP  161 (563)
T PRK08527         82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIP  161 (563)
T ss_pred             HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence            99999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.++++.......+.     ....+...++++.+++++++|.+||||+|++|.|++++++.++|++|||++|+||++
T Consensus       162 ~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~t  236 (563)
T PRK08527        162 KDVTATLGEFEYPKEISL-----KTYKPTYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVE  236 (563)
T ss_pred             HhHhhhhhcccccccccc-----ccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEE
Confidence            999877654210000000     000112234678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |+++||+||++||+|+|..       .++++++||+||+||++++++.+ +++..|.++.++||||.|+.+++... +++
T Consensus       237 t~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~  315 (563)
T PRK08527        237 TLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVT-GKLSEFAKHAKIIHVDIDPSSISKIVNADY  315 (563)
T ss_pred             ccccCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCcccc-CChhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence            9999999999999999853       56789999999999999988754 33334566789999999999987654 489


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV  403 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v  403 (482)
                      .+++|++.+|++|.+.++...  ......|.+.+.++++....    .......++++.++++.|++.+    |+++|++
T Consensus       316 ~i~~D~~~~l~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l----~~d~iv~  385 (563)
T PRK08527        316 PIVGDLKNVLKEMLEELKEEN--PTTYKEWREILKRYNELHPL----SYEDSDEVLKPQWVIERVGELL----GDDAIIS  385 (563)
T ss_pred             EEecCHHHHHHHHHHhhhhcc--ccchHHHHHHHHHHHHhCcc----cccCCCCCcCHHHHHHHHHhhC----CCCeEEE
Confidence            999999999999999886431  01224576655443332110    0111234688888999999988    9999999


Q ss_pred             eCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          404 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       404 ~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      .|++ +..|..+ +++...|++|+.++++|+|||++|+|||+++|.|+++|++|+|||||+|++|||||++|||+|+++|
T Consensus       386 ~d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~v  464 (563)
T PRK08527        386 TDVGQHQMWVAQ-FYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINI  464 (563)
T ss_pred             ECCcHHHHHHHH-hcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEE
Confidence            9955 5555544 4577789999999999999999999999999999999999999999999999999999999999864

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=100.00  E-value=2.1e-87  Score=714.79  Aligned_cols=453  Identities=25%  Similarity=0.418  Sum_probs=388.9

Q ss_pred             ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      +..++++|+|++.|+++||+||||+||+.+++|++++.++++++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus        13 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N   92 (571)
T PRK07710         13 EKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATN   92 (571)
T ss_pred             cccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence            34678999999999999999999999999999999998788999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||++++.+++++++.+++|++.|.++|||||||+|
T Consensus        93 ~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i  172 (571)
T PRK07710         93 VVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDI  172 (571)
T ss_pred             HHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++.++++.......+.     ....+...+++..+++++++|.+|+||+|++|.|+.++++.+++.+|+|++|+||+
T Consensus       173 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~  247 (571)
T PRK07710        173 PKDMVVEEGEFCYDVQMDL-----PGYQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVV  247 (571)
T ss_pred             ChhHhhccccccccccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEE
Confidence            9999987764211000000     00111223567789999999999999999999999888899999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590          251 PTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH  322 (482)
Q Consensus       251 ~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~  322 (482)
                      +|+.+||+||++||+++|..       .++++++||+||+||++++++.+ ++...|.++.++||||.|+..++... ++
T Consensus       248 tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~ig~~~~~~  326 (571)
T PRK07710        248 HTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVT-GNLAYFAKEATVAHIDIDPAEIGKNVPTE  326 (571)
T ss_pred             EcCccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCcccc-CchhhcCCCCeEEEEECCHHHhcCcCCCC
Confidence            99999999999999999853       56789999999999999987654 44344667789999999999987655 48


Q ss_pred             eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEE
Q 011590          323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPIL  402 (482)
Q Consensus       323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~  402 (482)
                      +.+++|++.+|++|.+.++..    .....|.+.+.+++++....    ......++++..+++.|++.+    |+++++
T Consensus       327 ~~i~~D~~~~l~~L~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l----~~~~iv  394 (571)
T PRK07710        327 IPIVADAKQALQVLLQQEGKK----ENHHEWLSLLKNWKEKYPLS----YKRNSESIKPQKAIEMLYEIT----KGEAIV  394 (571)
T ss_pred             eEEecCHHHHHHHHHHhhhcc----CCcHHHHHHHHHHHHhChhh----hcCCCCCcCHHHHHHHHHhhC----CCCeEE
Confidence            999999999999999876532    12345766555444332111    111234688888899998888    999999


Q ss_pred             EeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590          403 VSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       403 v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~  481 (482)
                      +.|+++ ..|.. .+++...|++|+.++++|+|||++|+|||++++.|+++||+++|||||+|++|||||++||++|+++
T Consensus       395 ~~d~g~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~i  473 (571)
T PRK07710        395 TTDVGQHQMWAA-QYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKV  473 (571)
T ss_pred             EECCcHHHHHHH-HhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEE
Confidence            999554 55554 4568888999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 011590          482 I  482 (482)
Q Consensus       482 ~  482 (482)
                      |
T Consensus       474 v  474 (571)
T PRK07710        474 V  474 (571)
T ss_pred             E
Confidence            5

>PRK08322 acetolactate synthase; Reviewed

Probab=100.00  E-value=1.5e-87  Score=714.16  Aligned_cols=447  Identities=28%  Similarity=0.421  Sum_probs=382.4

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      |+++++|++.|+++||+||||+||+.+.+|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus         1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~   80 (547)
T PRK08322          1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT   80 (547)
T ss_pred             CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence            67999999999999999999999999999999998788999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ||++||.+++|||+|+|++++...+++.+|++||.++|+++|||++++++++++++.+++|++.|+++|+|||||+||.|
T Consensus        81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  160 (547)
T PRK08322         81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED  160 (547)
T ss_pred             HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590          174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP  253 (482)
Q Consensus       174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~  253 (482)
                      ++.++++....   +.      .....+.++++.+++++++|.+||||+|++|+|+.++++.+++.+|||++|+||++|+
T Consensus       161 v~~~~~~~~~~---~~------~~~~~~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~  231 (547)
T PRK08322        161 IAAEETDGKPL---PR------SYSRRPYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQ  231 (547)
T ss_pred             hhhCccccccc---cc------cCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcc
Confidence            98877653211   10      0112234567889999999999999999999999988999999999999999999999


Q ss_pred             CCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeE
Q 011590          254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGL  325 (482)
Q Consensus       254 ~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i  325 (482)
                      ++||.||++||+++|..       .++++++||+||+||+++.++.+..+.  +.++.++||||.|+..++..+ +++.+
T Consensus       232 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i  309 (547)
T PRK08322        232 MGKGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN--PNGDKKVIHINFLPAEVDPVYFPQVEV  309 (547)
T ss_pred             ccCCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCccccccccC--CCCCCeEEEEeCCHHHcCCCcCCCeEE
Confidence            99999999999999853       467899999999999999876544332  245678999999999886544 59999


Q ss_pred             eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590          326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE  405 (482)
Q Consensus       326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e  405 (482)
                      ++|++.+|++|.+.+++..   .....|.+..+   ++.....+........++++.++++.|++.+    +++++++.|
T Consensus       310 ~~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ii~~d  379 (547)
T PRK08322        310 VGDIANSLWQLKERLADQP---HWDFPRFLKIR---EAIEAHLEEGADDDRFPMKPQRIVADLRKVM----PDDDIVILD  379 (547)
T ss_pred             ecCHHHHHHHHHHhccccc---cccHHHHHHHH---HHHHHhhhhcccCCCCCcCHHHHHHHHHHHC----CCCeEEEEC
Confidence            9999999999998875421   11112332222   2111111111111233688888999999988    989999888


Q ss_pred             -chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          406 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       406 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                       |.+..|+.++ ++...|++|+.+.++|+|||++|+|||+++|+|+++||+++|||||+|++|||||++||++|+++|
T Consensus       380 ~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ii  456 (547)
T PRK08322        380 NGAYKIWFARN-YRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVL  456 (547)
T ss_pred             CcHHHHHHHHh-cccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEE
Confidence             5556666554 577889999999999999999999999999999999999999999999999999999999999875

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=100.00  E-value=1.5e-87  Score=720.30  Aligned_cols=457  Identities=25%  Similarity=0.393  Sum_probs=388.2

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .+++++|+|++.|+++||+||||+||+.+++|++++.+ ++|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus        29 ~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N  108 (612)
T PRK07789         29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATN  108 (612)
T ss_pred             ccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence            45799999999999999999999999999999999965 48999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++||.+++|||+|+|+.+....+++.+|++||..+|+++|||++++++++++.+.+++|++.|+++|+|||||+|
T Consensus       109 ~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~i  188 (612)
T PRK07789        109 LVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDI  188 (612)
T ss_pred             HHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++.++++.........     ....+...++++.+++++++|.+||||+|++|.|+.++++.+++++|||++|+||+
T Consensus       189 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~  263 (612)
T PRK07789        189 PKDALQAQTTFSWPPRMDL-----PGYRPVTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVV  263 (612)
T ss_pred             ccchhhcccccccCccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEE
Confidence            9999988764211000000     00112224567889999999999999999999999989999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590          251 PTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH  322 (482)
Q Consensus       251 ~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~  322 (482)
                      ||+.+||+||++||+++|..       .++++++||+||++|+++++..+ ++...|.+++++||||.|+.++++.+ .+
T Consensus       264 tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t-~~~~~~~~~~~~i~Id~d~~~i~~~~~~~  342 (612)
T PRK07789        264 TTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVT-GKLDSFAPDAKVIHADIDPAEIGKNRHAD  342 (612)
T ss_pred             EcccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCcccc-CChhhcCCCCcEEEEECCHHHhCCCCCCC
Confidence            99999999999999999853       45789999999999999987654 33334667789999999999997654 59


Q ss_pred             eeEeccHHHHHHHHHHhhhcCCCCC--CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590          323 LGLVGDAKKVLEMINKEIKDEPFCL--GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP  400 (482)
Q Consensus       323 ~~i~~D~~~~l~~L~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  400 (482)
                      +.+++|++.+|++|++.++......  .....|.+.+.+.+++.....   ....+.++++..+++.|++.+    ++++
T Consensus       343 ~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~l~~~l----~~~~  415 (612)
T PRK07789        343 VPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGY---DEPSDGSLAPQYVIERLGEIA----GPDA  415 (612)
T ss_pred             eEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCcccc---ccccCCCcCHHHHHHHHHhhC----CCCe
Confidence            9999999999999999886431110  122456665544333221110   011235688888899998888    9999


Q ss_pred             EEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          401 ILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       401 i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      +++.|+++ ..|. ..+|+...|++|+.++++|+|||++|+|||++++.|+++|++|+|||||+|+.|||||++||++|+
T Consensus       416 ivv~d~G~~~~~~-~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv  494 (612)
T PRK07789        416 IYVAGVGQHQMWA-AQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPI  494 (612)
T ss_pred             EEEECCcHHHHHH-HHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHHcCCCe
Confidence            99999554 4554 456688888999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       495 ~iv  497 (612)
T PRK07789        495 KVA  497 (612)
T ss_pred             EEE
Confidence            875

>PRK08617 acetolactate synthase; Reviewed

Probab=100.00  E-value=2.6e-87  Score=712.34  Aligned_cols=452  Identities=25%  Similarity=0.387  Sum_probs=383.9

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      ++++++++|++.|+++||+||||+||+++++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~   82 (552)
T PRK08617          3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNL   82 (552)
T ss_pred             ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHh
Confidence            45799999999999999999999999999999999987889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++|+++|+.+++|||+|+|+++....+++.+|++||..+|+++|||++++++++++++.+++|++.|.++|||||||+||
T Consensus        83 l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP  162 (552)
T PRK08617         83 ATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLP  162 (552)
T ss_pred             HHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++..+++.+......        ......++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++
T Consensus       163 ~dv~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~t  234 (552)
T PRK08617        163 QDVVDAPVTSKAIAPLS--------KPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVE  234 (552)
T ss_pred             hhhhhcccccccccccc--------CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEe
Confidence            99998887632111000        1112234667899999999999999999999999889999999999999999999


Q ss_pred             CCCCCCCCCCCCC-cccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590          252 TPMGKGLLPDTHP-LAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH  322 (482)
Q Consensus       252 t~~~~g~~~~~hp-~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~  322 (482)
                      |++|||+||++|| +|+|..       .++++++||+||+||+++.++....+.  +.++.++||||.|+..++..+ ++
T Consensus       235 t~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~  312 (552)
T PRK08617        235 TFQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYEPRNWN--SEGDATIIHIDVLPAEIDNYYQPE  312 (552)
T ss_pred             ccccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCccccccccccc--cCCCCcEEEEeCChHHhCCccCCC
Confidence            9999999999998 588852       457899999999999998765433222  123579999999999997655 59


Q ss_pred             eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEE
Q 011590          323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPIL  402 (482)
Q Consensus       323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~  402 (482)
                      +.+.+|++.+|++|.+.++.... ......|.+...+.++.+...   .......++++..+++.|++.+    ++++++
T Consensus       313 ~~i~~D~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l----~~~~ii  384 (552)
T PRK08617        313 RELIGDIAATLDLLAEKLDGLSL-SPQSLEILEELRAQLEELAER---PARLEEGAVHPLRIIRALQDIV----TDDTTV  384 (552)
T ss_pred             eEEeCCHHHHHHHHHHhhhcccC-ccchHHHHHHHHHHHHHhhhh---hcccCCCCcCHHHHHHHHHHhc----CCCcEE
Confidence            99999999999999988764311 111234554433332221111   1112334688888999999988    999999


Q ss_pred             EeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590          403 VSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       403 v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~  481 (482)
                      +.| |.+..|..+ +++...|++++.++++|+|||++|+|||+++|.|+++||+++|||||+|++|||+|++|||+||++
T Consensus       385 ~~d~G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~  463 (552)
T PRK08617        385 TVDVGSHYIWMAR-YFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVH  463 (552)
T ss_pred             EeCCcHHHHHHHH-hccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEE
Confidence            888 566666655 457788899998888999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 011590          482 I  482 (482)
Q Consensus       482 ~  482 (482)
                      |
T Consensus       464 v  464 (552)
T PRK08617        464 I  464 (552)
T ss_pred             E
Confidence            4

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=100.00  E-value=3.9e-87  Score=709.04  Aligned_cols=448  Identities=24%  Similarity=0.387  Sum_probs=380.5

Q ss_pred             HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHH
Q 011590           16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGL   95 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai   95 (482)
                      ++++|++.|+++||+||||+||+++++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++||
T Consensus         1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl   80 (539)
T TIGR02418         1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL   80 (539)
T ss_pred             CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence            47999999999999999999999999999999878899999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590           96 SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus        96 ~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      ++|+.+++|||+|+|+.++...+++.+|++||..+|+++|||++++.+++++++.+++|++.|.++|||||||+||.|++
T Consensus        81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~  160 (539)
T TIGR02418        81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV  160 (539)
T ss_pred             HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence            99999999999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC
Q 011590          176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG  255 (482)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~  255 (482)
                      .++++........        ......++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++|++|
T Consensus       161 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~g  232 (539)
T TIGR02418       161 DSPVSVKAIPASY--------APKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG  232 (539)
T ss_pred             hCcccccccCccc--------CCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEcccc
Confidence            8887632111000        11122345678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-Ccccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEe
Q 011590          256 KGLLPDTH-PLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLV  326 (482)
Q Consensus       256 ~g~~~~~h-p~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~  326 (482)
                      ||.||++| |+|+|.       ..++++++||+||++|+++.++.+..+.  +.++.++||||.|+.+++..+ +++.++
T Consensus       233 kg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~  310 (539)
T TIGR02418       233 AGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWN--SENDATIVHIDVEPAQIDNNYQPDLELV  310 (539)
T ss_pred             CcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccCccccC--cCCCCeEEEEeCChHHcCCccCCCeEEe
Confidence            99999997 788874       3457899999999999998866543332  233579999999999997654 599999


Q ss_pred             ccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC-
Q 011590          327 GDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-  405 (482)
Q Consensus       327 ~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e-  405 (482)
                      +|++.+|++|.+.+++... ......|.+.+.+.++++...   .......++++.++++.|++.+    +++++++.| 
T Consensus       311 ~D~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l----~~~~ii~~d~  382 (539)
T TIGR02418       311 GDIASTLDLLAERIPGYEL-PPDALAILEDLKQQREALDRV---PATLKQAHLHPLEIIKAMQAIV----TDDVTVTVDM  382 (539)
T ss_pred             cCHHHHHHHHHHhhccccC-ccchHHHHHHHHHHHHHhhhc---cccCCCCCcCHHHHHHHHHhhC----CCCCEEEECC
Confidence            9999999999988764311 011123544333322222110   0111234688888999999988    999999988 


Q ss_pred             chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       406 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |.+..|..+ +++...|++++.+.++|+|||++|+|||+++|.|+++||+|+|||||+|++|||||++||++|+++|
T Consensus       383 G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~iv  458 (539)
T TIGR02418       383 GSHYIWMAR-YFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHI  458 (539)
T ss_pred             cHHHHHHHH-hcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEE
Confidence            555666655 4577889999998899999999999999999999999999999999999999999999999999875

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=100.00  E-value=8.7e-87  Score=711.15  Aligned_cols=456  Identities=25%  Similarity=0.381  Sum_probs=385.1

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV   89 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~   89 (482)
                      ++++|+|++.|+++||+||||+||+.+++|++++.+    .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus         2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~   81 (572)
T PRK06456          2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT   81 (572)
T ss_pred             CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence            379999999999999999999999999999999963    3699999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD  169 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~  169 (482)
                      |+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++++++++++.+++|++.|+++++|||||+
T Consensus        82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~  161 (572)
T PRK06456         82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVID  161 (572)
T ss_pred             HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590          170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF  249 (482)
Q Consensus       170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv  249 (482)
                      ||.|++.++++.......+. .  .........++++.+++++++|.+|+||+|++|.|++++++.+++++|+|++|+||
T Consensus       162 iP~Dv~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv  238 (572)
T PRK06456        162 IPRDIFYEKMEEIKWPEKPL-V--KGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPI  238 (572)
T ss_pred             cChhHhhccccccccccccc-c--cCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCE
Confidence            99999988875311000000 0  00011122356788999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCC-CCCcEEEEeCCchhhcccC-
Q 011590          250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVDVCKEEIELRK-  320 (482)
Q Consensus       250 ~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~-~~~~ii~id~d~~~~~~~~-  320 (482)
                      ++|+++||+||++||+|+|.       ..++++++||+||++|++++++.+..+ ..+. +++++||||.|+..++..+ 
T Consensus       239 ~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~~~~~  317 (572)
T PRK06456        239 VSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSY-DEMVETRKKFIMVNIDPTDGEKAIK  317 (572)
T ss_pred             EEcCccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhhcccc-ccccCCCCeEEEEeCChHHhCCccC
Confidence            99999999999999999985       245678999999999999987754332 2333 3678999999999987655 


Q ss_pred             CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590          321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP  400 (482)
Q Consensus       321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  400 (482)
                      .++.+.+|++.+|++|.+.+.+... ......|.+.+...++.+....   ......++++..+++.|++.+    ++++
T Consensus       318 ~~~~i~~D~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~~~l----~~~~  389 (572)
T PRK06456        318 VDVGIYGNAKIILRELIKAITELGQ-KRDRSAWLKRVKEYKEYYSQFY---YTEENGKLKPWKIMKTIRQAL----PRDA  389 (572)
T ss_pred             CCeEEecCHHHHHHHHHHHhhhccc-ccccHHHHHHHHHHHHhchhhc---ccccCCCcCHHHHHHHHHHhC----CCCE
Confidence            5899999999999999998764210 0122457665554433322111   011234688889999999998    9999


Q ss_pred             EEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          401 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       401 i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      +++.|++ +..|.. .+++...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+
T Consensus       390 ii~~d~g~~~~~~~-~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i  468 (572)
T PRK06456        390 IVTTGVGQHQMWAE-VFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPV  468 (572)
T ss_pred             EEEECCcHHHHHHH-HhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCe
Confidence            9999854 455554 45677788999999899999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       469 ~iv  471 (572)
T PRK06456        469 ISV  471 (572)
T ss_pred             EEE
Confidence            865

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=100.00  E-value=9.5e-87  Score=710.55  Aligned_cols=457  Identities=26%  Similarity=0.407  Sum_probs=383.3

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh---C-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ---L-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~---~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      .++++++|++.|+++||+||||+||+.+++|++++.+   . +|++|.+|||++|+|||+||+|+||||+||++|+|||+
T Consensus         9 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~   88 (585)
T CHL00099          9 EKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPGA   88 (585)
T ss_pred             cccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCcH
Confidence            5789999999999999999999999999999999963   2 49999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      +|+++||++|+.+++|||+|+|++++...+++.+|++||..+++++|||+.++.+++++.+.+++||+.|.++|||||||
T Consensus        89 ~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l  168 (585)
T CHL00099         89 TNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLI  168 (585)
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                      +||.|++.++++...........+ .........++++.+++++++|.+||||+|++|.|++++++.++|++|||++|+|
T Consensus       169 ~iP~Dv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~P  247 (585)
T CHL00099        169 DIPKDVGLEKFDYYPPEPGNTIIK-ILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAELYKIP  247 (585)
T ss_pred             ecChhhhhhhcccccccccccccc-cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHHHHHHCCC
Confidence            999999987765311110000000 0001112345778899999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-
Q 011590          249 FLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-  320 (482)
Q Consensus       249 v~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-  320 (482)
                      |+||+.+||+||++||+|+|..       .++++++||+||+||+++++..++ ++..|.++.++||||.|+.+++..+ 
T Consensus       248 V~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~i~~~~~  326 (585)
T CHL00099        248 VTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTG-KLDEFACNAQVIHIDIDPAEIGKNRI  326 (585)
T ss_pred             EEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccC-CHhHcCCCCeEEEEECCHHHhCCCCC
Confidence            9999999999999999999853       457889999999999999876543 3334566789999999999987555 


Q ss_pred             CceeEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590          321 PHLGLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP  398 (482)
Q Consensus       321 ~~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  398 (482)
                      +++.+.+|+..+|++|++.+++....  ......|.+.+.++++++..    .......++++.++++.|++.+    | 
T Consensus       327 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~l~~~~----~-  397 (585)
T CHL00099        327 PQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPL----LIPKPSTSLSPQEVINEISQLA----P-  397 (585)
T ss_pred             CCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChh----hccccCCCcCHHHHHHHHHhhC----C-
Confidence            58999999999999999987642110  01113465554433332211    0111235789989999999887    8 


Q ss_pred             CcEEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590          399 APILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII  477 (482)
Q Consensus       399 ~~i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l  477 (482)
                      ++|++.|+++ ..|..+ +++. .|++|+.+.++|+|||++|+|||+++|.|+++||+|+|||||+|++|||||++||++
T Consensus       398 d~iv~~d~G~~~~~~~~-~~~~-~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l  475 (585)
T CHL00099        398 DAYFTTDVGQHQMWAAQ-FLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNL  475 (585)
T ss_pred             CeEEEECCcHHHHHHHH-hccC-CCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCC
Confidence            8989999554 455544 4554 578999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 011590          478 MISSI  482 (482)
Q Consensus       478 ~i~~~  482 (482)
                      |+++|
T Consensus       476 ~~~~v  480 (585)
T CHL00099        476 PIKII  480 (585)
T ss_pred             CeEEE
Confidence            98764

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=100.00  E-value=7.1e-87  Score=713.10  Aligned_cols=451  Identities=24%  Similarity=0.300  Sum_probs=382.9

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      +++++|+|++.|+++||+||||+||+++++|++++.+  .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus         2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n   81 (597)
T PRK08273          2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH   81 (597)
T ss_pred             CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence            3789999999999999999999999999999999975  36999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhcccc-ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS-KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD  169 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~-k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~  169 (482)
                      +++||++||.|++|||+|+|++++...+++.+|++||..+|+++| ||+.++.+++++++.+++|++.|++++ |||||+
T Consensus        82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~i~  160 (597)
T PRK08273         82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVI  160 (597)
T ss_pred             HHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence            999999999999999999999999999999999999999999999 999999999999999999999999976 999999


Q ss_pred             cCcchhccccChhHHHH-HHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          170 LPTDVLHQTISVSEAEK-LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       170 iP~dv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                      ||.|++.++++.+.... .....+  ......+.++++.+++++++|.+||||+|++|.|+.  ++.+++.+|||++|+|
T Consensus       161 iP~Dv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~lae~~~~P  236 (597)
T PRK08273        161 LPNDVQELEYEPPPHAHGTVHSGV--GYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVAERLGAG  236 (597)
T ss_pred             eCcchhhCcccCcccccccccccc--CCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHHHHhCCc
Confidence            99999987764321100 000000  001123346788999999999999999999999985  7788999999999999


Q ss_pred             EeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-
Q 011590          249 FLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-  320 (482)
Q Consensus       249 v~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-  320 (482)
                      |+||++|||+||++||+|+|..       .++++++||+||+||+++++.. +.  . ..+++++||||.|+.++++.+ 
T Consensus       237 V~tt~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~~-~~--~-~~~~~~~i~Id~d~~~~~~~~~  312 (597)
T PRK08273        237 VAKALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYSE-FL--P-KEGQARGVQIDIDGRMLGLRYP  312 (597)
T ss_pred             eeecccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHHh-cC--C-CCCCCeEEEEeCCHHHcCCCCC
Confidence            9999999999999999999843       5678999999999999986432 11  0 123578999999999987554 


Q ss_pred             CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590          321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP  400 (482)
Q Consensus       321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  400 (482)
                      +++.+++|++.+|++|++.++..     ....|.+.+.+.++++..........+..++++..+++.|++.+    |+++
T Consensus       313 ~~~~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l----~~~~  383 (597)
T PRK08273        313 MEVNLVGDAAETLRALLPLLERK-----KDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRL----PDNA  383 (597)
T ss_pred             CCceEecCHHHHHHHHHHhhhcc-----CCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhC----CCCe
Confidence            58999999999999999988643     23458776666665554333221112345789999999999988    9999


Q ss_pred             EEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCC-hHHHHHHHHc---
Q 011590          401 ILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS-AVEVEVWLSC---  475 (482)
Q Consensus       401 i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~-~~eL~T~~r~---  475 (482)
                      |++.| |.+..|..+ +|+...+++++.++++|+|||++|+|||+++|.|+++||+|+|||||+|+ +|||+|++||   
T Consensus       384 ivv~d~G~~~~~~~~-~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~  462 (597)
T PRK08273        384 ILTADSGSCANWYAR-DLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQ  462 (597)
T ss_pred             EEEECCcHHHHHHHH-hCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhc
Confidence            99988 555666655 46777788999999999999999999999999999999999999999999 6999999999   


Q ss_pred             --CcccccC
Q 011590          476 --IIMISSI  482 (482)
Q Consensus       476 --~l~i~~~  482 (482)
                        |+|+++|
T Consensus       463 ~~~lpviiv  471 (597)
T PRK08273        463 WSDPRLIVL  471 (597)
T ss_pred             ccCCCEEEE
Confidence              8998765

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=100.00  E-value=1.5e-86  Score=707.60  Aligned_cols=447  Identities=23%  Similarity=0.360  Sum_probs=378.4

Q ss_pred             HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      ++++|++.|+++||+||||+||+++++|++++.+  .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus         1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~   80 (575)
T TIGR02720         1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN   80 (575)
T ss_pred             CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence            4799999999999999999999999999999975  36999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ||++||.+++|||+|+|++++...+.+.+|++||.++|+++|||+.++.+++++++.+++|++.|++ ++|||||+||.|
T Consensus        81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D  159 (575)
T TIGR02720        81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD  159 (575)
T ss_pred             HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 569999999999


Q ss_pred             hhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590          174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP  253 (482)
Q Consensus       174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~  253 (482)
                      ++.++++.......+.    .......+.++++.+++++++|++||||+|++|.|++  ++.++|.+|||++|+||+||+
T Consensus       160 v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV~tt~  233 (575)
T TIGR02720       160 FGWQEIPDNDYYASSV----SYQTPLLPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPLISTG  233 (575)
T ss_pred             hhhccccccccccccc----cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCEEEcc
Confidence            9988876422110000    0001223456788999999999999999999999996  577899999999999999999


Q ss_pred             CCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeE
Q 011590          254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGL  325 (482)
Q Consensus       254 ~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i  325 (482)
                      ++||+||++||+|+|..       .++++++||+||++|+++++... .  ..+.++.++||||.|+..+++.+ +++.+
T Consensus       234 ~gkg~~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~-~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i  310 (575)
T TIGR02720       234 LAKGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEV-S--KAFKNTKYFIQIDIDPAKLGKRHHTDIAV  310 (575)
T ss_pred             cccccCCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCcccc-c--cccCCCceEEEEeCCHHHhCCCCCCCeEE
Confidence            99999999999999853       45788999999999999875432 1  12444455699999999997665 48999


Q ss_pred             eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590          326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE  405 (482)
Q Consensus       326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e  405 (482)
                      .+|++.+|++|++.++..     ....|.+...+..++++...+........++++..+++.|++.+    |+++|++.|
T Consensus       311 ~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~ii~~D  381 (575)
T TIGR02720       311 LADAKKALAAILAQVEPR-----ESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIA----EDDAIYSID  381 (575)
T ss_pred             ecCHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhC----CCCcEEEeC
Confidence            999999999999987643     12346544333333333222111122345788889999999988    999999988


Q ss_pred             -chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          406 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       406 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                       |.+..|..+ +++...|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++|
T Consensus       382 ~g~~~~~~~~-~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~V  458 (575)
T TIGR02720       382 VGDININSNR-HLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINI  458 (575)
T ss_pred             CcHHHHHHHH-hCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEE
Confidence             555666655 5688889999999889999999999999999999999999999999999999999999999999865

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PRK08611 pyruvate oxidase; Provisional

Probab=100.00  E-value=2.6e-86  Score=706.00  Aligned_cols=446  Identities=27%  Similarity=0.398  Sum_probs=380.3

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV   89 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~   89 (482)
                      .+++++++|++.|+++||+||||+||+.+++|++++.+  .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus         2 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~   81 (576)
T PRK08611          2 AKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAI   81 (576)
T ss_pred             CCCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHH
Confidence            35799999999999999999999999999999999964  5799999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD  169 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~  169 (482)
                      |+++||++||.+++|||+|+|++++...+++.+|++||..+|+++|||++++.+++++++.+++|++.|.+++ |||||+
T Consensus        82 N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-GPV~l~  160 (576)
T PRK08611         82 HLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLT  160 (576)
T ss_pred             HHHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999875 999999


Q ss_pred             cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590          170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF  249 (482)
Q Consensus       170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv  249 (482)
                      ||.|++.++++.......+.      .....+.++++.+++++++|.+||||+|++|+|++  ++.+++.+|||++|+||
T Consensus       161 iP~Dv~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~~PV  232 (576)
T PRK08611        161 IPDDLPAQKIKDTTNKTVDT------FRPTVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEKAKIPI  232 (576)
T ss_pred             eChhhhhccccccccccccc------CCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhCCCE
Confidence            99999988875321110000      01123346778899999999999999999999986  56789999999999999


Q ss_pred             eeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590          250 LPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P  321 (482)
Q Consensus       250 ~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~  321 (482)
                      ++|+++||++|++||+++|..       .++++++||+||+||+++++..      .+.++.++||||.|+.+++..+ +
T Consensus       233 ~tt~~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~~------~~~~~~~~i~id~d~~~i~~~~~~  306 (576)
T PRK08611        233 IHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVD------YLPKKAKAIQIDTDPANIGKRYPV  306 (576)
T ss_pred             EEccccccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCccc------cCCCCCcEEEEeCCHHHcCCccCC
Confidence            999999999999999999843       4578899999999999886432      1344579999999999997654 5


Q ss_pred             ceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590          322 HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI  401 (482)
Q Consensus       322 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  401 (482)
                      ++.+++|++.+|++|.+.++..     ....|.+.+.+.++++....+......+.++++..+++.|++.+    |++++
T Consensus       307 ~~~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l----~~~~i  377 (576)
T PRK08611        307 NVGLVGDAKKALHQLTENIKHV-----EDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIA----DDDAV  377 (576)
T ss_pred             CeeEecCHHHHHHHHHHhcccc-----cchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhc----CCCeE
Confidence            8999999999999999987642     22357665544444443322221112334688888899998888    99999


Q ss_pred             EEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590          402 LVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS  480 (482)
Q Consensus       402 ~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~  480 (482)
                      ++.|+ .+..|..+ +++...|++|+.+.++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|++||++|++
T Consensus       378 vv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~i  456 (576)
T PRK08611        378 LSVDVGTVTVWSAR-YLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIV  456 (576)
T ss_pred             EEEcChHHHHHHHh-cCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeE
Confidence            99885 45556555 46777888999888899999999999999999999999999999999999999999999999987


Q ss_pred             cC
Q 011590          481 SI  482 (482)
Q Consensus       481 ~~  482 (482)
                      +|
T Consensus       457 iv  458 (576)
T PRK08611        457 VV  458 (576)
T ss_pred             EE
Confidence            64

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=100.00  E-value=3.1e-86  Score=704.29  Aligned_cols=451  Identities=25%  Similarity=0.353  Sum_probs=383.5

Q ss_pred             CCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590            9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG   87 (482)
Q Consensus         9 ~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG   87 (482)
                      ..+..++++|+|++.|+++||+||||+||+.+++|++++.+. +|++|.++||++|+|||+||+|+||||+||++|+|||
T Consensus         3 ~~~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG   82 (557)
T PRK08199          3 STPRARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPG   82 (557)
T ss_pred             cccccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            345568999999999999999999999999999999999765 5999999999999999999999999999999999999


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY  167 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~  167 (482)
                      ++|+++||++||.+++|||+|+|+++....+++.+|++||..+|+++|||++++.+++++++.+++|++.|+++|+||||
T Consensus        83 ~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~  162 (557)
T PRK08199         83 ATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVV  162 (557)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590          168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI  247 (482)
Q Consensus       168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~  247 (482)
                      |+||.|++.++++.......         ......++++.+++++++|.+||||+|++|.|+.++++.+++.+|||++|+
T Consensus       163 l~iP~dl~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~  233 (557)
T PRK08199        163 LALPEDVLSETAEVPDAPPY---------RRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGL  233 (557)
T ss_pred             EEcCHhHhhCcccccccCCc---------CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCC
Confidence            99999999887653211000         112334667889999999999999999999999988999999999999999


Q ss_pred             cEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCC--CCCCCcEEEEeCCchhhcc
Q 011590          248 PFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPK--WSKDVKFVLVDVCKEEIEL  318 (482)
Q Consensus       248 pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~--~~~~~~ii~id~d~~~~~~  318 (482)
                      ||++|+.+||++|++||+|+|.       ..++++++||+||++|++++++.+.++...  ..++.++||||.|+..++.
T Consensus       234 pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~  313 (557)
T PRK08199        234 PVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGR  313 (557)
T ss_pred             CEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCC
Confidence            9999999999999999999984       345788999999999999987664333211  1246789999999999876


Q ss_pred             cC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590          319 RK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS  397 (482)
Q Consensus       319 ~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  397 (482)
                      .+ .++.+++|++.+|++|.+.++.      ....|.+.+.+.++++....+  ......++++..+++.|++.+    |
T Consensus       314 ~~~~~~~i~~D~~~~l~~L~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l----~  381 (557)
T PRK08199        314 VYRPDLAIVADPAAFAAALAALEPP------ASPAWAEWTAAAHADYLAWSA--PLPGPGAVQLGEVMAWLRERL----P  381 (557)
T ss_pred             ccCCCeEEecCHHHHHHHHHhcccc------cchhHHHHHHHHHHHHHhhcc--ccCCCCCcCHHHHHHHHHHhC----C
Confidence            54 5899999999999999886432      123465554444333321111  011224688888999999988    9


Q ss_pred             CCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590          398 PAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI  476 (482)
Q Consensus       398 ~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~  476 (482)
                      ++++++.|+ .+..|+.+ +++...++.++.+ ++|+|||++|+|||+++++|+++||+|+|||||+|+.|||+|++||+
T Consensus       382 ~~~ii~~d~g~~~~~~~~-~~~~~~~~~~~~~-~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~  459 (557)
T PRK08199        382 ADAIITNGAGNYATWLHR-FFRFRRYRTQLAP-TSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYG  459 (557)
T ss_pred             CCeEEEECChHHHHHHHH-hcCcCCCCeEECC-CCccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhC
Confidence            999999995 44555544 5677778888865 56999999999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 011590          477 IMISSI  482 (482)
Q Consensus       477 l~i~~~  482 (482)
                      +||++|
T Consensus       460 l~i~~v  465 (557)
T PRK08199        460 LPIIVI  465 (557)
T ss_pred             CCeEEE
Confidence            999875

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=100.00  E-value=3.9e-86  Score=706.38  Aligned_cols=458  Identities=23%  Similarity=0.346  Sum_probs=386.1

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      ++++++++|++.|+++||+||||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus         2 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N   81 (574)
T PRK06882          2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATN   81 (574)
T ss_pred             CcccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHH
Confidence            34799999999999999999999999999999999976 58999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++++++++.+.+++|++.|.++|+|||||+|
T Consensus        82 ~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i  161 (574)
T PRK06882         82 AITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDI  161 (574)
T ss_pred             HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++....+...  ..+...+ .....+...+++..+++++++|.+||||+|++|.|++++++.++|.+|||++|+||+
T Consensus       162 P~Dv~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~  238 (574)
T PRK06882        162 PKDMVNPANKFTY--EYPEEVS-LRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVT  238 (574)
T ss_pred             CHHHhhhhccccc--ccCcccc-cccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence            9999876643110  0000000 000011123467789999999999999999999999988999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590          251 PTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH  322 (482)
Q Consensus       251 ~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~  322 (482)
                      +|++|||+||++||+|+|..       .++++++||+||+||++++++.+.+ ...+.+++++||||.|+..++..+ ++
T Consensus       239 tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~I~id~d~~~~~~~~~~~  317 (574)
T PRK06882        239 SSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNN-LAKYCPNAKVIHIDIDPTSISKNVPAY  317 (574)
T ss_pred             EcCccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCccccCc-hhhcCCCCeEEEEECCHHHhcCccCCc
Confidence            99999999999999999853       4568999999999999998876533 333566789999999999987655 49


Q ss_pred             eeEeccHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590          323 LGLVGDAKKVLEMINKEIKDEPF--CLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP  400 (482)
Q Consensus       323 ~~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  400 (482)
                      +.+.+|+..+|++|.+.+.....  .......|.+.+.+++++....    .+....++++..+++.|++.+    ++++
T Consensus       318 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~~~l----~~~~  389 (574)
T PRK06882        318 IPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLE----FDRTSDVIKPQQVVEAIYRLT----NGDA  389 (574)
T ss_pred             eEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhh----hccCCCCcCHHHHHHHHHhhc----CCCe
Confidence            99999999999999998754210  0112245766654443332111    111224678888999999887    8899


Q ss_pred             EEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          401 ILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       401 i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      +++.|+++ ..|. ..+++...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+
T Consensus       390 ii~~d~g~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv  468 (574)
T PRK06882        390 YVASDVGQHQMFA-ALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPV  468 (574)
T ss_pred             EEEecCchhHHHH-HHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCe
Confidence            99999554 4554 455688889999999899999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       469 ~~v  471 (574)
T PRK06882        469 VIV  471 (574)
T ss_pred             EEE
Confidence            865

>PRK07524 hypothetical protein; Provisional

Probab=100.00  E-value=4e-86  Score=700.65  Aligned_cols=443  Identities=25%  Similarity=0.396  Sum_probs=372.0

Q ss_pred             cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 011590           15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG   94 (482)
Q Consensus        15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~a   94 (482)
                      +++|+|++.|+++||+||||+||+.++++++++.+++|++|.++||++|++||+||+|+||||+||++|+|||++|+++|
T Consensus         3 ~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~g   82 (535)
T PRK07524          3 TCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATA   82 (535)
T ss_pred             cHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHH
Confidence            78999999999999999999999999999999987899999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCcEEEEeCCCCcccCCCC--CCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           95 LSNGMINTWPIVMISGSCDQKDFGRG--DFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        95 i~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      |++||.+++|||+|+|+.++...+++  .+|+ +||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+||
T Consensus        83 i~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP  162 (535)
T PRK07524         83 MGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIP  162 (535)
T ss_pred             HHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence            99999999999999999998877753  5666 59999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.++++.....  ++      .....+.++++.+++++++|.+||||+|++|.|++  ++.++|.+|||++++||++
T Consensus       163 ~Dv~~~~~~~~~~~--~~------~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~pV~t  232 (535)
T PRK07524        163 LDVLAAPADHLLPA--PP------TRPARPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERLDAPVAL  232 (535)
T ss_pred             HhHHhcccccccCc--cc------ccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHHCCCEEE
Confidence            99999887642111  00      01123346778899999999999999999999986  6789999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-----HHHhhhcCCEEEEecCccCcccccC-CCCCCCCCCcEEEEeCCchhhcccC-Ccee
Q 011590          252 TPMGKGLLPDTHPLAATAA-----RSLAIGQCDVALVVGARLNWLLHFG-EPPKWSKDVKFVLVDVCKEEIELRK-PHLG  324 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-----~~~~l~~aDlvl~iG~~~~~~~~~g-~~~~~~~~~~ii~id~d~~~~~~~~-~~~~  324 (482)
                      |+++||.||++||+|+|..     .++++++||+||++|+++++..... +...|.++.++||||.|+.++++.+ .++.
T Consensus       233 t~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~  312 (535)
T PRK07524        233 TINAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALA  312 (535)
T ss_pred             cccccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCce
Confidence            9999999999999999853     5678999999999999987543211 1123556789999999999987554 5999


Q ss_pred             EeccHHHHHHHHHHhhhcCCCCCCCChHHHHH-HHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590          325 LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA-IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV  403 (482)
Q Consensus       325 i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v  403 (482)
                      +.+|++.+|++|.+.++.+.    ....|... ..+.+++...    ..  +...+.+..+++.|++.+    | +.+++
T Consensus       313 i~~D~~~~L~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~l~~~l----~-~~~i~  377 (535)
T PRK07524        313 LVGDARAALEALLARLPGQA----AAADWGAARVAALRQALRA----EW--DPLTAAQVALLDTILAAL----P-DAIFV  377 (535)
T ss_pred             EecCHHHHHHHHHHhccccC----CchhhHHHHHHHHHHhchh----hc--cccccCHHHHHHHHHHhC----C-CCEEE
Confidence            99999999999999886531    22346422 2222221111    11  122345566788888877    7 57777


Q ss_pred             eCchhHHHHHHHhhhcCCCCeeec-CCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          404 SEGANTMDVGRAVLVQTEPRCRLD-AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       404 ~eg~~~~~~~~~~~~~~~~~~~~~-~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      .|+++..++...+++...|++|+. ++++|+|||++|+|||+++|+|+++||+++|||||+|++|||||++|||+|+++|
T Consensus       378 ~d~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~v  457 (535)
T PRK07524        378 GDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVL  457 (535)
T ss_pred             eCCcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEE
Confidence            775544434444568888999998 8889999999999999999999999999999999999999999999999999864

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=100.00  E-value=8.1e-86  Score=701.71  Aligned_cols=452  Identities=29%  Similarity=0.441  Sum_probs=386.2

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHH-hCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~-~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      |+++++|++.|+++||+||||+||+.+++|++++. +.+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus         1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l   80 (558)
T TIGR00118         1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV   80 (558)
T ss_pred             CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence            57999999999999999999999999999999997 47899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++++++++.+.+++|++.|.++|+|||||+||.
T Consensus        81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~  160 (558)
T TIGR00118        81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPK  160 (558)
T ss_pred             HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590          173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT  252 (482)
Q Consensus       173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t  252 (482)
                      |++.++++.......+.     ....+...+.+..+++++++|.+||||+|++|+|++++++.++|.+|||++|+||++|
T Consensus       161 dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt  235 (558)
T TIGR00118       161 DVTTAEIEYPYPEKVNL-----PGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTT  235 (558)
T ss_pred             hhhhhhccccccccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEc
Confidence            99988765311100000     0001111345678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Ccee
Q 011590          253 PMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLG  324 (482)
Q Consensus       253 ~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~  324 (482)
                      +++||++|++||+|+|..       .++++++||+||+||+++++..+ +++..|.++.++||||.|+..++..+ +++.
T Consensus       236 ~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~  314 (558)
T TIGR00118       236 LMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVT-GNLAKFAPNAKIIHIDIDPAEIGKNVRVDIP  314 (558)
T ss_pred             cccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCcccc-CchhhcCCCCcEEEEeCCHHHhCCcCCCCeE
Confidence            999999999999999852       46789999999999999987654 33333556789999999999886554 5999


Q ss_pred             EeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEe
Q 011590          325 LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS  404 (482)
Q Consensus       325 i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~  404 (482)
                      +.+|+..+|++|.+.++...  ......|.+.+.+++++....    ......++++..+++.|++.+    |+++|++.
T Consensus       315 i~~d~~~~l~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l----~~~~iv~~  384 (558)
T TIGR00118       315 IVGDARNVLEELLKKLFELK--ERKESAWLEQINKWKKEYPLK----MDYTEEGIKPQQVIEELSRVT----KDEAIVTT  384 (558)
T ss_pred             EecCHHHHHHHHHHhhhhcc--ccCcHHHHHHHHHHHHhChhh----ccCCCCCcCHHHHHHHHHhhC----CCCeEEEe
Confidence            99999999999999875421  012345766554443332111    112234688888899998888    99999999


Q ss_pred             Cch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          405 EGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       405 eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |++ +..|. ..+|+...|++|+.++++|+|||++|+|||+++|.|+++||+++|||||+|++|||||++|+++|+++|
T Consensus       385 d~g~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~v  462 (558)
T TIGR00118       385 DVGQHQMWA-AQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKIL  462 (558)
T ss_pred             CCcHHHHHH-HHhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEE
Confidence            954 44554 445688889999999999999999999999999999999999999999999999999999999998865

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=100.00  E-value=1.1e-85  Score=703.15  Aligned_cols=455  Identities=26%  Similarity=0.414  Sum_probs=386.4

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      ++++|+|++.|+++||++|||+||+++++|++++.+.+|++|.++||++|++||+||+|+||||+||++|+|||++|+++
T Consensus         1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~   80 (586)
T PRK06276          1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT   80 (586)
T ss_pred             CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence            57999999999999999999999999999999998778999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ||++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|+++|+|||||+||.|
T Consensus        81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D  160 (586)
T PRK06276         81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD  160 (586)
T ss_pred             HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590          174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP  253 (482)
Q Consensus       174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~  253 (482)
                      ++.++++..... .+... ......+...+++..+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++|+
T Consensus       161 v~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~  238 (586)
T PRK06276        161 VQEGELDLEKYP-IPAKI-DLPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTL  238 (586)
T ss_pred             HHhhhhcccccc-ccccc-cccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence            998876532110 00000 0000011123457789999999999999999999999989999999999999999999999


Q ss_pred             CCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeE
Q 011590          254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGL  325 (482)
Q Consensus       254 ~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i  325 (482)
                      ++||+||++||+|+|..       .++++++||+||+||+++++..+. .+..|.++.++||||.|+..++..+ +++.+
T Consensus       239 ~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i  317 (586)
T PRK06276        239 MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTG-DISSFAPNAKIIHIDIDPAEIGKNVRVDVPI  317 (586)
T ss_pred             CCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCccccC-CccccCCCCeEEEEECCHHHhCCcCCCceEE
Confidence            99999999999999853       457899999999999999876543 3334567789999999999886554 59999


Q ss_pred             eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC-----Cc
Q 011590          326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP-----AP  400 (482)
Q Consensus       326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~  400 (482)
                      ++|++.+|++|++.+.....  .....|.+.+.+.+.++...    ......++++..+++.|++.+    ++     ++
T Consensus       318 ~~D~~~~L~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~~l----~~~~~~~~~  387 (586)
T PRK06276        318 VGDAKNVLRDLLAELMKKEI--KNKSEWLERVKKLKKESIPR----MDFDDKPIKPQRVIKELMEVL----REIDPSKNT  387 (586)
T ss_pred             ecCHHHHHHHHHHhhhhhcc--cchHHHHHHHHHHHHhcccc----ccCCCCCcCHHHHHHHHHHhc----cccCCCCCe
Confidence            99999999999998764211  12345765554433322111    011234688888999999888    87     89


Q ss_pred             EEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          401 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       401 i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      |++.|++ +..|.. .+|+...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||||++||++|+
T Consensus       388 iv~~d~G~~~~~~~-~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv  466 (586)
T PRK06276        388 IITTDVGQNQMWMA-HFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPV  466 (586)
T ss_pred             EEEeCCcHHHHHHH-HhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCe
Confidence            9999954 455554 45688889999999899999999999999999999999999999999999999999999999998


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       467 ~~v  469 (586)
T PRK06276        467 VIC  469 (586)
T ss_pred             EEE
Confidence            865

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-85  Score=700.61  Aligned_cols=443  Identities=19%  Similarity=0.291  Sum_probs=378.6

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      ++++++|++.|+++||+|+||+||+++++|++++.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus         3 ~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~   82 (578)
T PRK06546          3 KTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLI   82 (578)
T ss_pred             ccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHH
Confidence            7999999999999999999999999999999999764 899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +||++|+.+++|||+|+|+++....+++.+|++||.++|+++|||++++++++++++.+++|++.|++ +||||||+||.
T Consensus        83 ~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~lP~  161 (578)
T PRK06546         83 NGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGVSVVTLPG  161 (578)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEcCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999996 56999999999


Q ss_pred             chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590          173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT  252 (482)
Q Consensus       173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t  252 (482)
                      |++.+++++.......      ........++++.+++++++|++||||+|++|+|++  ++.+++.+|||++|+||++|
T Consensus       162 Dv~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~Pv~~t  233 (578)
T PRK06546        162 DIADEPAPEGFAPSVI------SPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIKAPVGHS  233 (578)
T ss_pred             hhhhcccccccccccc------ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhCcceEEC
Confidence            9998887642110000      001122346778999999999999999999999996  67899999999999999999


Q ss_pred             CCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Ccee
Q 011590          253 PMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLG  324 (482)
Q Consensus       253 ~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~  324 (482)
                      +++||+||++||+++|.       ..++++++||+||+||+++++.       .|.++.++||||.|+.++++.+ +++.
T Consensus       234 ~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~-------~~~~~~~~I~vd~d~~~~~~~~~~~~~  306 (578)
T PRK06546        234 LRGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPYD-------QFLPDVRTAQVDIDPEHLGRRTRVDLA  306 (578)
T ss_pred             cccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCChh-------hcCCCCcEEEEeCCHHHhCCCCCCCeE
Confidence            99999999999999984       3567899999999999987632       1344578999999999997664 5899


Q ss_pred             EeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhh---hcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590          325 LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQL---AKDVVPFNFMTPMRIIRDAILGVGSPAPI  401 (482)
Q Consensus       325 i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  401 (482)
                      +.+|++.+|++|.+.+++.     ....|.+.+.++++++........   ..+..++++..+++.|++.+    ++++|
T Consensus       307 i~~D~~~~l~~L~~~L~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~i  377 (578)
T PRK06546        307 VHGDVAETIRALLPLVKEK-----TDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELA----ADDAV  377 (578)
T ss_pred             EEcCHHHHHHHHHHhhccc-----CChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhc----cCCcE
Confidence            9999999999999988643     123466544333333221111111   11234688888999999888    89999


Q ss_pred             EEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590          402 LVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS  480 (482)
Q Consensus       402 ~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~  480 (482)
                      ++.|+ .+..|..+ ++...++++++.++.+|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|++
T Consensus       378 vv~d~G~~~~~~~~-~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~  456 (578)
T PRK06546        378 FTVDTGMCNVWAAR-YITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVK  456 (578)
T ss_pred             EEECCcHHHHHHHH-hcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeE
Confidence            99984 55566655 45777888999888899999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 011590          481 SI  482 (482)
Q Consensus       481 ~~  482 (482)
                      +|
T Consensus       457 ~v  458 (578)
T PRK06546        457 VV  458 (578)
T ss_pred             EE
Confidence            75

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-85  Score=698.75  Aligned_cols=445  Identities=21%  Similarity=0.320  Sum_probs=378.1

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      +++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         2 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~   81 (574)
T PRK09124          2 KQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHL   81 (574)
T ss_pred             CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHH
Confidence            3799999999999999999999999999999999975 479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++||++|+.+++|||+|+|++++...+++.+|++||..+|+++|||++++++++++++.+++|++.|+++ +|||||+||
T Consensus        82 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-~gPV~l~iP  160 (574)
T PRK09124         82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGVAVVVLP  160 (574)
T ss_pred             HHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985 599999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++.++++.......+.      .......+++..+++++++|.+||||+|++|+|+  .++.+++.+|||++|+||++
T Consensus       161 ~Dv~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~--~~a~~~l~~lae~l~~PV~t  232 (574)
T PRK09124        161 GDVALKPAPERATPHWYH------APQPVVTPAEEELRKLAALLNGSSNITLLCGSGC--AGAHDELVALAETLKAPIVH  232 (574)
T ss_pred             hhhhhCcccccccccccc------CCCCCCCCCHHHHHHHHHHHHcCCCCEEEECcCh--HhHHHHHHHHHHHhCCceEE
Confidence            999998876421100000      0111223466789999999999999999999998  36789999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |++|||+||++||+++|..       .+.++++||+||+||+++++..      .+.+++++||||.|+.+++..+ +++
T Consensus       233 t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~------~~~~~~~ii~id~d~~~~~~~~~~~~  306 (574)
T PRK09124        233 ALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYRQ------FYPTDAKIIQIDINPGSLGRRSPVDL  306 (574)
T ss_pred             cccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCccc------ccCCCCcEEEeeCCHHHhCCCCCCCe
Confidence            9999999999999999852       4578899999999999886431      1345579999999999997655 599


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhh--hcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQL--AKDVVPFNFMTPMRIIRDAILGVGSPAPI  401 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~i  401 (482)
                      .+.+|++.+|++|.+.++..     ....|.+.+.+..++++.......  .....++++..+++.|++.+    +++++
T Consensus       307 ~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~i  377 (574)
T PRK09124        307 GLVGDVKATLAALLPLLEEK-----TDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFA----ADDAI  377 (574)
T ss_pred             EEEccHHHHHHHHHHhhhcc-----CChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhc----CCCcE
Confidence            99999999999999877542     123465544333333322211111  11234688888899998888    99999


Q ss_pred             EEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590          402 LVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS  480 (482)
Q Consensus       402 ~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~  480 (482)
                      ++.| |.+..|..+ +++...+++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|++
T Consensus       378 vv~d~g~~~~~~~~-~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~  456 (574)
T PRK09124        378 FTCDVGTPTVWAAR-YLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVK  456 (574)
T ss_pred             EEEcCCHHHHHHHH-hcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeE
Confidence            9999 555666655 45778889999998999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 011590          481 SI  482 (482)
Q Consensus       481 ~~  482 (482)
                      +|
T Consensus       457 iv  458 (574)
T PRK09124        457 IV  458 (574)
T ss_pred             EE
Confidence            65

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=100.00  E-value=7.4e-85  Score=692.11  Aligned_cols=435  Identities=22%  Similarity=0.358  Sum_probs=368.9

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      ++++++|++.|+++||+||||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus         2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~   81 (549)
T PRK06457          2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN   81 (549)
T ss_pred             CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence            58999999999999999999999999999999998778999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||++++++++++++.+++|++.|+++ +|||||+||.|
T Consensus        82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~D  160 (549)
T PRK06457         82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGVAHINLPVD  160 (549)
T ss_pred             HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999996 59999999999


Q ss_pred             hhccccChhHHHHHHHhhhhhcccccCCCCC-HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590          174 VLHQTISVSEAEKLLKEAESAKETVTQGGIV-NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT  252 (482)
Q Consensus       174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t  252 (482)
                      ++..+.+... ...          ...+.+. ...+++++++|++||||+|++|.|++  ++.+++++|||++|+||++|
T Consensus       161 v~~~~~~~~~-~~~----------~~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~PV~tt  227 (549)
T PRK06457        161 ILRKSSEYKG-SKN----------TEVGKVKYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGAPIIYT  227 (549)
T ss_pred             Hhhccccccc-ccc----------cCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCCCEEEc
Confidence            9887754211 000          0111122 35789999999999999999999986  66789999999999999999


Q ss_pred             CCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Ccee
Q 011590          253 PMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLG  324 (482)
Q Consensus       253 ~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~  324 (482)
                      ++|||+||++||+++|..       .++++++||+||++|+++++..      .+.++.++||||.|+.++++.+ .++.
T Consensus       228 ~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~------~~~~~~~ii~id~d~~~~~~~~~~~~~  301 (549)
T PRK06457        228 LNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVN------FLNKSAKVIQVDIDNSNIGKRLDVDLS  301 (549)
T ss_pred             ccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhh------cCCCCCcEEEEeCCHHHhCCCCCCCeE
Confidence            999999999999999853       4578899999999999986532      1344679999999999997554 4999


Q ss_pred             EeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEe
Q 011590          325 LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS  404 (482)
Q Consensus       325 i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~  404 (482)
                      +.+|++.+|+.+...   .      ...|.+...+.+.+|...+.........++++.++++.|++.+    |++++++.
T Consensus       302 i~~d~~~~l~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~iiv~  368 (549)
T PRK06457        302 YPIPVAEFLNIDIEE---K------SDKFYEELKGKKEDWLDSISKQENSLDKPMKPQRVAYIVSQKC----KKDAVIVT  368 (549)
T ss_pred             EecCHHHHHHHHhhc---c------cchhHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHhhC----CCCeEEEE
Confidence            999999999543221   1      1124333333333343333222222345788889999999988    99999988


Q ss_pred             C-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCC-CCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          405 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACP-ERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       405 e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p-~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      | |.+..|..+ +++...|++|+.+.++|+|||++|+|||+++|+| +|+||+|+|||||+|++|||||++||++|+++|
T Consensus       369 d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~iv  447 (549)
T PRK06457        369 DTGNVTMWTAR-HFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKII  447 (549)
T ss_pred             CCcHHHHHHHH-hCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEE
Confidence            8 455666554 4577778999998889999999999999999998 999999999999999999999999999999865

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=100.00  E-value=2.4e-84  Score=692.68  Aligned_cols=461  Identities=24%  Similarity=0.343  Sum_probs=380.5

Q ss_pred             ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      +.+++++++|++.|+++||++|||+|+...  +.+++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus        11 ~~~~~~a~~i~~~L~~~GV~~vFG~~~~~~--~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N   88 (578)
T PRK06112         11 TLNGTVAHAIARALKRHGVEQIFGQSLPSA--LFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATL   88 (578)
T ss_pred             ccCcCHHHHHHHHHHHCCCCEEeecccchH--hHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHH
Confidence            457799999999999999999999986642  345566678999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++||.+++|||+|+|+++....+++.+|++||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+|
T Consensus        89 ~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i  168 (578)
T PRK06112         89 LVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLL  168 (578)
T ss_pred             HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++.++++.+....... .  ...+.....+++..+++++++|.+||||+|++|.|+.++++.+++.+|||++|+||+
T Consensus       169 P~Dv~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~  245 (578)
T PRK06112        169 PADLLTAAAAAPAAPRSNS-L--GHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVA  245 (578)
T ss_pred             CHhHhhCccccccCccccc-c--cCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence            9999988876421110000 0  000112234667889999999999999999999999989999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccchH------------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc
Q 011590          251 PTPMGKGLLPDTHPLAATAA------------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL  318 (482)
Q Consensus       251 ~t~~~~g~~~~~hp~~~G~~------------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~  318 (482)
                      +|+++||+||++||+|+|..            .++++++||+||+||++++++.+.++ ..+.++.++||||.|+.+++.
T Consensus       246 ~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~  324 (578)
T PRK06112        246 TTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSW-SLYPEQAQYIHIDVDGEEVGR  324 (578)
T ss_pred             EcccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCccccccc-cccCCCCeEEEEECChHHhCc
Confidence            99999999999999998852            34678999999999999998765443 335567899999999999876


Q ss_pred             cCCceeEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccC
Q 011590          319 RKPHLGLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG  396 (482)
Q Consensus       319 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  396 (482)
                      .++++.+.+|++.+|++|.+.+.+....  ...+..|.+...+..+++.............++++.++++.|++.+    
T Consensus       325 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l----  400 (578)
T PRK06112        325 NYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVL----  400 (578)
T ss_pred             cccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhC----
Confidence            6667999999999999999887543111  0122345443333222221111111112234688888999999888    


Q ss_pred             CCCcEEEeCch-hHHHHHHHhhhcCCCC-eeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHH
Q 011590          397 SPAPILVSEGA-NTMDVGRAVLVQTEPR-CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLS  474 (482)
Q Consensus       397 ~~~~i~v~eg~-~~~~~~~~~~~~~~~~-~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r  474 (482)
                      |++++++.|++ +..|..+ +++...++ .|+.+.++|+|||++|+|+|+++|+|+++||+|+|||||+|++|||+|++|
T Consensus       401 ~~~~ivv~d~g~~~~~~~~-~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el~ta~~  479 (578)
T PRK06112        401 TGDTIVVADASYSSIWVAN-FLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARR  479 (578)
T ss_pred             CCCCEEEEcccHHHHHHHH-hcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHHHHHHH
Confidence            99999998855 4555544 45655555 688888899999999999999999999999999999999999999999999


Q ss_pred             cCcccccC
Q 011590          475 CIIMISSI  482 (482)
Q Consensus       475 ~~l~i~~~  482 (482)
                      ||+|+++|
T Consensus       480 ~~l~~~~v  487 (578)
T PRK06112        480 MGVPVTIV  487 (578)
T ss_pred             hCCCeEEE
Confidence            99999865

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=100.00  E-value=1e-84  Score=692.77  Aligned_cols=451  Identities=21%  Similarity=0.271  Sum_probs=377.3

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC------CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL------GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP   86 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~------~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp   86 (482)
                      .++++|+|++.|+++||+|+||+||+++++|++++.+.      +|++|.+|||++|++||+||+|+||||+||++|+||
T Consensus         6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP   85 (569)
T PRK08327          6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV   85 (569)
T ss_pred             cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence            46899999999999999999999999999999999642      399999999999999999999999999999999999


Q ss_pred             hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCC--------CCCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHH
Q 011590           87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR--------GDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLER  157 (482)
Q Consensus        87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--------~~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~  157 (482)
                      |++|+++||++||.|++|||+|+|+.+....++        +.+|+ +||..+|+++|||+.++++++++.+.+++|++.
T Consensus        86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~  165 (569)
T PRK08327         86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQI  165 (569)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999998776554        35898 699999999999999999999999999999999


Q ss_pred             hhcCCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHH
Q 011590          158 AVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE  237 (482)
Q Consensus       158 a~~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~  237 (482)
                      |.++|+|||||+||.|++.++++...... +.     ......+.++++.+++++++|++||||+|++|+|++++++.++
T Consensus       166 a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~  239 (569)
T PRK08327        166 AMSEPKGPVYLTLPREVLAEEVPEVKADA-GR-----QMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFAS  239 (569)
T ss_pred             HhcCCCCCEEEECcHHHHhhhccccccCc-cc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHH
Confidence            99999999999999999998876421110 00     0012234567789999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhc
Q 011590          238 LKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE  317 (482)
Q Consensus       238 l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~  317 (482)
                      +.+|||++++||++|+++||.||++||+|+|...++++++|||||+||+++++..+..   .+.++.++||||.|+.+++
T Consensus       240 l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~~~~~~~---~~~~~~~vi~Id~d~~~~~  316 (569)
T PRK08327        240 LRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVPWIPKKI---RPDADARVIQIDVDPLKSR  316 (569)
T ss_pred             HHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEEEeCCCCCCccccc---cCCCCCeEEEEeCChhhhc
Confidence            9999999999999999999999999999999888889999999999999987654322   1456789999999999875


Q ss_pred             c---cC-CceeEeccHHHHHHHHHHhhhcCCCCCC-----CChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHH
Q 011590          318 L---RK-PHLGLVGDAKKVLEMINKEIKDEPFCLG-----KNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRII  388 (482)
Q Consensus       318 ~---~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  388 (482)
                      .   .+ .++.+++|++.+|++|++.++.......     ....|.+...+.+..+.....  ....+.++++..+++.|
T Consensus       317 ~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~l  394 (569)
T PRK08327        317 IPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIE--RLKDRGPITPAYLSYCL  394 (569)
T ss_pred             ccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhh--ccCCCCCcCHHHHHHHH
Confidence            2   33 4899999999999999998864311000     011344332222111111100  01233578999999999


Q ss_pred             HHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHH
Q 011590          389 RDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE  468 (482)
Q Consensus       389 ~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~e  468 (482)
                      ++.+    |++.+++.+.   .|.. .+|+...|++|+.++++|+|||++|+|+|+++|.|+++||+|+|||||+|+++|
T Consensus       395 ~~~l----~~~~~vv~~~---~~~~-~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e  466 (569)
T PRK08327        395 GEVA----DEYDAIVTEY---PFVP-RQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPE  466 (569)
T ss_pred             HHhc----CccceEEecc---HHHH-HhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcH
Confidence            9999    8888888653   2343 456888899999999999999999999999999999999999999999999977


Q ss_pred             --HHHHHHcCcccccC
Q 011590          469 --VEVWLSCIIMISSI  482 (482)
Q Consensus       469 --L~T~~r~~l~i~~~  482 (482)
                        |||++|||+|+++|
T Consensus       467 ~~l~ta~~~~l~~~iv  482 (569)
T PRK08327        467 AAHWVAERYGLPVLVV  482 (569)
T ss_pred             HHHHHHHHhCCCEEEE
Confidence              99999999999875

>PRK08266 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-84  Score=686.32  Aligned_cols=443  Identities=27%  Similarity=0.411  Sum_probs=375.9

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .++++++|++.|+++||++|||+||+++++|++++.+  ++|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus         3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N   82 (542)
T PRK08266          3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN   82 (542)
T ss_pred             CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence            4799999999999999999999999999999999975  47999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY  167 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~  167 (482)
                      +++||++|+.+++|||+|+|+++....+.+.  +|+ +||..+|+++|||+.++++++++++.+++|++.|+++|+||||
T Consensus        83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~  162 (542)
T PRK08266         83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVA  162 (542)
T ss_pred             HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEE
Confidence            9999999999999999999999988777654  566 5999999999999999999999999999999999999999999


Q ss_pred             EEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590          168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI  247 (482)
Q Consensus       168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~  247 (482)
                      |+||.|++.++++.......        .....+.++++.+++++++|.+||||+|++|.|+  .++.++|.+|||++|+
T Consensus       163 l~iP~dv~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~--~~a~~~l~~lae~~g~  232 (542)
T PRK08266        163 LEMPWDVFGQRAPVAAAPPL--------RPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGA--AGAGEEIRELAEMLQA  232 (542)
T ss_pred             EEeCHhHhhCcccccccccc--------cCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCh--hhHHHHHHHHHHHHCC
Confidence            99999999888764211100        0123445677889999999999999999999996  4678999999999999


Q ss_pred             cEeeCCCCCCCCCCCCCcccchH-HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEe
Q 011590          248 PFLPTPMGKGLLPDTHPLAATAA-RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLV  326 (482)
Q Consensus       248 pv~~t~~~~g~~~~~hp~~~G~~-~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~  326 (482)
                      ||++|+.+||+||++||+++|.. .++++++||+||+||+++++. .+++ ..+.++.++||||.|+..++++.+++.+.
T Consensus       233 pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~-~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~i~  310 (542)
T PRK08266        233 PVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELP-TFRW-PWRPDGLKVIRIDIDPTEMRRLKPDVAIV  310 (542)
T ss_pred             CEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcc-cccc-cccCCCCcEEEEECCHHHhCCcCCCceEe
Confidence            99999999999999999999964 457889999999999999876 3333 22445679999999999987655699999


Q ss_pred             ccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcc-cHHHHHHHHHhccCCCCcEEEeC
Q 011590          327 GDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFM-TPMRIIRDAILGVGSPAPILVSE  405 (482)
Q Consensus       327 ~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~i~v~e  405 (482)
                      +|++.+|++|.+.+++..   .....|...+.+.+.++....        ..+++. .+++.|++.+    |++++++.|
T Consensus       311 ~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~l----p~d~ivv~d  375 (542)
T PRK08266        311 ADAKAGTAALLDALSKAG---SKRPSRRAELRELKAAARQRI--------QAVQPQASYLRAIREAL----PDDGIFVDE  375 (542)
T ss_pred             cCHHHHHHHHHHhhhhcc---cCchHHHHHHHHHHHhhhhcc--------ccCCHHHHHHHHHHHhc----CCCcEEEeC
Confidence            999999999999876421   112346555444333221110        124443 3678888888    999999999


Q ss_pred             chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       406 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +++...+..++++...|++|+.++++|+|||++|+|+|++++.|+++||+++|||||+|++|||+|++|||+|+++|
T Consensus       376 ~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~iv  452 (542)
T PRK08266        376 LSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTV  452 (542)
T ss_pred             CcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence            55444444556787888999998889999999999999999999999999999999999999999999999999874

>PRK07064 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-83  Score=681.21  Aligned_cols=441  Identities=22%  Similarity=0.307  Sum_probs=371.0

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      +++++++|++.|+++||+||||+||+.+++|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~   81 (544)
T PRK07064          2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA   81 (544)
T ss_pred             CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence            4689999999999999999999999999999999965 579999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      ++||++||.+++|||+|+|++++...+++.  +|+ +||..+|+++|||++++++++++++.+++|++.|.++|+|||||
T Consensus        82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l  161 (544)
T PRK07064         82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSV  161 (544)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE
Confidence            999999999999999999999888777653  455 69999999999999999999999999999999999999999999


Q ss_pred             EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                      +||.|++.++++.+... .+.       ....+.++++.+++++++|.+||||+|++|.|++  ++.++|.+||| +|+|
T Consensus       162 ~iP~dv~~~~~~~~~~~-~~~-------~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~~~p  230 (544)
T PRK07064        162 EIPIDIQAAEIELPDDL-APV-------HVAVPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-LGFG  230 (544)
T ss_pred             EeCHhHhhccccccccc-ccc-------cCCCCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-cCCC
Confidence            99999998886532111 000       1122346778999999999999999999999986  56789999999 9999


Q ss_pred             EeeCCCCCCCCCCCCCcccch-----HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590          249 FLPTPMGKGLLPDTHPLAATA-----ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH  322 (482)
Q Consensus       249 v~~t~~~~g~~~~~hp~~~G~-----~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~  322 (482)
                      |++|+++||+||++||+++|.     ..++++++||+||+||+++++..+.++.  +....++||||.|+..++..+ .+
T Consensus       231 v~~t~~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~  308 (544)
T PRK07064        231 VVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSRLRGNETLKYS--LALPRPLIRVDADAAADGRGYPND  308 (544)
T ss_pred             EEEccCccccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCCCCcccccccc--cCCCCceEEEeCCHHHhCCcCCCC
Confidence            999999999999999999985     3567889999999999999877654432  333468999999999987554 59


Q ss_pred             eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhccCCCCcE
Q 011590          323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNF-MTPMRIIRDAILGVGSPAPI  401 (482)
Q Consensus       323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~i  401 (482)
                      +.+.+|++.+|++|.+.+++..   .....|.+.+.+.++++....       ..++.+ ..+++.|++.+    |++++
T Consensus       309 ~~i~~d~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~l----~~~~i  374 (544)
T PRK07064        309 LFVHGDAARVLARLADRLEGRL---SVDPAFAADLRAAREAAVADL-------RKGLGPYAKLVDALRAAL----PRDGN  374 (544)
T ss_pred             ceEecCHHHHHHHHHHhhhhcc---ccchHHHHHHHHHHHhhhhhc-------ccccCcHHHHHHHHHHhC----CCCCE
Confidence            9999999999999998875421   122457655544433322111       122433 35788888887    99999


Q ss_pred             EEeCc-hh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          402 LVSEG-AN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       402 ~v~eg-~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      ++.|. .+ ..|..+ +++...|++++.+.+ |+|||++|+|||+++|+|+++||+|+|||||+|++|||||++||++|+
T Consensus       375 i~~d~~~~~~~~~~~-~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv  452 (544)
T PRK07064        375 WVRDVTISNSTWGNR-LLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANM  452 (544)
T ss_pred             EEeCCccchHHHHHH-hcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCe
Confidence            99884 33 555544 567788888887755 999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       453 ~iv  455 (544)
T PRK07064        453 VIV  455 (544)
T ss_pred             EEE
Confidence            875

>PLN02573 pyruvate decarboxylase

Probab=100.00  E-value=9.6e-84  Score=684.68  Aligned_cols=450  Identities=19%  Similarity=0.281  Sum_probs=366.8

Q ss_pred             CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      +...++++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||+
T Consensus        12 ~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~   90 (578)
T PLN02573         12 SSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFTVGG   90 (578)
T ss_pred             ccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecCccH
Confidence            4456799999999999999999999999999999999965 57999999999999999999999999 999999999999


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC--------cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE--------LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS  160 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~--------~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~  160 (482)
                      +|+++||++||.|++|||+|+|+.++...+++.+|+        +++.++|+++|||+.++++++++.+.+++|++.|++
T Consensus        91 ~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~  170 (578)
T PLN02573         91 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALK  170 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999888777765322        234689999999999999999999999999999999


Q ss_pred             CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590          161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK  240 (482)
Q Consensus       161 ~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~  240 (482)
                      +| |||||+||.|++.++++.......+.   ..........+++..+++++++|.+||||+|++|.|++++++.+++++
T Consensus       171 ~~-gPV~l~iP~Dv~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~  246 (578)
T PLN02573        171 ES-KPVYISVSCNLAAIPHPTFSREPVPF---FLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVE  246 (578)
T ss_pred             cC-CCEEEEeehhhhcCccccccCCCCCc---ccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHH
Confidence            76 99999999999987754210000000   000001111234578999999999999999999999999999999999


Q ss_pred             HHHHhCCcEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590          241 LVESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC  312 (482)
Q Consensus       241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d  312 (482)
                      |||++|+||+||++|||+||++||+|+|..        .++++++||+||++|+++++.++.++. .+.+++++||||.|
T Consensus       247 lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~-~~~~~~~~I~id~d  325 (578)
T PLN02573        247 LADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYS-LLLKKEKAIIVQPD  325 (578)
T ss_pred             HHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCccccccc-ccCCCCcEEEEeCC
Confidence            999999999999999999999999999853        357889999999999999887665442 24567899999999


Q ss_pred             chhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 011590          313 KEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAI  392 (482)
Q Consensus       313 ~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  392 (482)
                      +..++.. .++.+. |+..+|++|++.++...   .....|. .....+.+.      .......++++.++++.|++.+
T Consensus       326 ~~~i~~~-~~~~~~-~~~~~l~~L~~~l~~~~---~~~~~~~-~~~~~~~~~------~~~~~~~~i~~~~~~~~l~~~l  393 (578)
T PLN02573        326 RVTIGNG-PAFGCV-LMKDFLEALAKRVKKNT---TAYENYK-RIFVPEGEP------LKSEPGEPLRVNVLFKHIQKML  393 (578)
T ss_pred             EEEECCc-ceECCc-CHHHHHHHHHHHhhccc---ccccccc-ccccCcccC------CCCCCCCccCHHHHHHHHHHhc
Confidence            9988653 245554 89999999998875421   0111121 100000000      0011234688889999999988


Q ss_pred             hccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590          393 LGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW  472 (482)
Q Consensus       393 ~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~  472 (482)
                          ++++|++.|+++++ +...++....++.|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||+
T Consensus       394 ----~~d~iiv~D~G~~~-~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta  468 (578)
T PLN02573        394 ----SGDTAVIAETGDSW-FNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTM  468 (578)
T ss_pred             ----CCCCEEEEecccch-hhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHH
Confidence                99999999965553 3334456666778888889999999999999999999999999999999999999999999


Q ss_pred             HHcCcccccC
Q 011590          473 LSCIIMISSI  482 (482)
Q Consensus       473 ~r~~l~i~~~  482 (482)
                      +||++|+++|
T Consensus       469 ~r~~lpvv~v  478 (578)
T PLN02573        469 IRCGQKSIIF  478 (578)
T ss_pred             HHcCCCCEEE
Confidence            9999999875

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=100.00  E-value=9.9e-83  Score=673.60  Aligned_cols=442  Identities=19%  Similarity=0.224  Sum_probs=376.0

Q ss_pred             CCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590            9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus         9 ~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      +..+.++++++|++.|+++||+|+||+||+++++|++++.+ +|++|.++||++|+|||+||+|+||||+||++|+|||+
T Consensus         7 ~~~~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~   85 (530)
T PRK07092          7 PAAAMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGV   85 (530)
T ss_pred             CccccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchH
Confidence            44557899999999999999999999999999999999964 69999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY  167 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~  167 (482)
                      +|+++||++|+.+++|||+|+|+++....+++.+|+ +||..+|+++|||+.++++++++++.+++|++.|+++|+||||
T Consensus        86 ~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~  165 (530)
T PRK07092         86 GNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVF  165 (530)
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEE
Confidence            999999999999999999999999999888888755 7999999999999999999999999999999999999999999


Q ss_pred             EEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590          168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI  247 (482)
Q Consensus       168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~  247 (482)
                      |+||.|++.++++..    .+.      .....+.++++.+++++++|.+||||+|++|.|++++++.++|.+|||++|+
T Consensus       166 l~iP~d~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~  235 (530)
T PRK07092        166 VSIPYDDWDQPAEPL----PAR------TVSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRA  235 (530)
T ss_pred             EEccHHHhhCccccc----ccC------CCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCC
Confidence            999999998886531    000      0112335677889999999999999999999999988999999999999999


Q ss_pred             cEeeCCC-CCCCCCCCCCcccchH------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC
Q 011590          248 PFLPTPM-GKGLLPDTHPLAATAA------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK  320 (482)
Q Consensus       248 pv~~t~~-~~g~~~~~hp~~~G~~------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~  320 (482)
                      ||++|++ +||+||++||+|+|..      .++++++||+||+||+++.++..+++...|.++.++||||.|+..++.+.
T Consensus       236 pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~  315 (530)
T PRK07092        236 PVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAWAP  315 (530)
T ss_pred             cEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcCCC
Confidence            9998876 7999999999999853      45788999999999998654434444444666789999999999886665


Q ss_pred             CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590          321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP  400 (482)
Q Consensus       321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  400 (482)
                      .++.+.+|+..+|++|++.++...     +..|..     ++...     ....+..++++..+++.|++.+    |+++
T Consensus       316 ~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~~~-----~~~~~-----~~~~~~~~l~~~~~~~~l~~~l----~~~~  376 (530)
T PRK07092        316 MGDAIVGDIRLALRDLLALLPPSA-----RPAPPA-----RPMPP-----PAPAPGEPLSVAFVLQTLAALR----PADA  376 (530)
T ss_pred             CCCcccCCHHHHHHHHHHhhcccc-----ccchhh-----hhccc-----cccCCCCCcCHHHHHHHHHHhC----CCCe
Confidence            689999999999999999886421     111110     00000     0011235688888999999888    9999


Q ss_pred             EEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          401 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       401 i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      +++.|++ +..|. ..+|+...|++|+.+. +|+|||++|+|+|++++.|+++||+++|||||+|+.|||+|++||++|+
T Consensus       377 ivv~d~g~~~~~~-~~~~~~~~~~~~~~~~-~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~  454 (530)
T PRK07092        377 IVVEEAPSTRPAM-QEHLPMRRQGSFYTMA-SGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPV  454 (530)
T ss_pred             EEEeCCCccHHHH-HHhcCcCCCCceEccC-CCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCc
Confidence            9998854 45555 4456877888988764 5999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       455 ~~v  457 (530)
T PRK07092        455 TFV  457 (530)
T ss_pred             EEE
Confidence            764

>PRK07586 hypothetical protein; Validated

Probab=100.00  E-value=2.4e-82  Score=669.03  Aligned_cols=424  Identities=19%  Similarity=0.213  Sum_probs=355.5

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      |+++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus         1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~   80 (514)
T PRK07586          1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL   80 (514)
T ss_pred             CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence            589999999999999999999999999999999975 5899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +||++||.+++|||+|+|+.+....+++.+|++||..+|+++|||++++++++++++.+++||+.|+++|+|||||+||.
T Consensus        81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~  160 (514)
T PRK07586         81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPA  160 (514)
T ss_pred             HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590          173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT  252 (482)
Q Consensus       173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t  252 (482)
                      |++.++++.+.. ..+        ....+.++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+||+++
T Consensus       161 Dv~~~~~~~~~~-~~~--------~~~~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~  231 (514)
T PRK07586        161 DVAWSEGGPPAP-PPP--------APAPAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAE  231 (514)
T ss_pred             chhccccccccc-cCC--------CCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEec
Confidence            999877653211 000        11233567889999999999999999999999999999999999999999999986


Q ss_pred             C------CCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcc--cccCCCC-CCCCCCcEEEEeCCchhhcccCCce
Q 011590          253 P------MGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWL--LHFGEPP-KWSKDVKFVLVDVCKEEIELRKPHL  323 (482)
Q Consensus       253 ~------~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~--~~~g~~~-~~~~~~~ii~id~d~~~~~~~~~~~  323 (482)
                      .      ++||++|++|+.+.+...+.++++||+||+||+++...  ...+... .++.+.++++++.            
T Consensus       232 ~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  299 (514)
T PRK07586        232 TFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAG------------  299 (514)
T ss_pred             ccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECC------------
Confidence            5      59999999998888877788999999999999986321  1111111 1222334444322            


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV  403 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v  403 (482)
                       ..+|++.+|++|.+.++...    ...    ...+.   .      .......++++.++++.|++.+    |+++|++
T Consensus       300 -~~~d~~~~l~~L~~~l~~~~----~~~----~~~~~---~------~~~~~~~~i~~~~~~~~l~~~l----~~~~ivv  357 (514)
T PRK07586        300 -PGEDAAAALEALADALGAKP----AAP----PLAAP---A------RPPLPTGALTPEAIAQVIAALL----PENAIVV  357 (514)
T ss_pred             -CcccHHHHHHHHHHhhcccc----cch----hhhhc---c------ccCCCCCCcCHHHHHHHHHHhC----CCCeEEE
Confidence             13799999999998775321    010    00000   0      0011235688888999999988    9999999


Q ss_pred             eCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          404 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       404 ~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      .|++ +..|. ..+++...|++|+.+.+ |+|||++|+|||+++|.|+++||+|+|||||+|++|||||++|||+|+++|
T Consensus       358 ~d~g~~~~~~-~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~iv  435 (514)
T PRK07586        358 DESITSGRGF-FPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTV  435 (514)
T ss_pred             eCCCcCHHHH-HHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEE
Confidence            9954 45555 45567788889997765 999999999999999999999999999999999999999999999998764

>PRK12474 hypothetical protein; Provisional

Probab=100.00  E-value=4.4e-82  Score=666.44  Aligned_cols=425  Identities=19%  Similarity=0.227  Sum_probs=354.5

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .+++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|+||||||+|+||||+||++|+|||++|
T Consensus         3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N   82 (518)
T PRK12474          3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN   82 (518)
T ss_pred             cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence            46799999999999999999999999999999999965 58999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++||.|++|||+|+|+.+....+.+.+|+.|+..+++++|||+.++++++++++.+++|++.|.++|+|||||+|
T Consensus        83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~i  162 (518)
T PRK12474         83 GLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIM  162 (518)
T ss_pred             hHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            99999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++.++++.+. ...+        ....+.++++.+++++++|.+||||+|++|+|+.++++.+++.+|||++|+||+
T Consensus       163 P~Dv~~~~~~~~~-~~~~--------~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~  233 (518)
T PRK12474        163 PADVAWNEAAYAA-QPLR--------GIGPAPVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLY  233 (518)
T ss_pred             chhhhcccccCCc-CCCC--------CCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEE
Confidence            9999987764211 0000        011234667899999999999999999999999999999999999999999999


Q ss_pred             eC------CCCCCCCCC-CCCcccchHHHHhhhcCCEEEEecCccCcc--cccC-CCCCCCCCCcEEEEeCCchhhcccC
Q 011590          251 PT------PMGKGLLPD-THPLAATAARSLAIGQCDVALVVGARLNWL--LHFG-EPPKWSKDVKFVLVDVCKEEIELRK  320 (482)
Q Consensus       251 ~t------~~~~g~~~~-~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~--~~~g-~~~~~~~~~~ii~id~d~~~~~~~~  320 (482)
                      +|      +++||.||+ +||++ +....+++++||+||+||+++++.  ...+ +...+.+..++++++..        
T Consensus       234 ~t~~~~~~~~gkg~~~~~~~~~~-~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------  304 (518)
T PRK12474        234 CDTFAPRIERGAGRVPIERIPYF-HEQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQP--------  304 (518)
T ss_pred             EecCcccccCCCCCCCCcccccc-hHHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCC--------
Confidence            75      368999995 66776 444557899999999999996421  1111 11123445678877642        


Q ss_pred             CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590          321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP  400 (482)
Q Consensus       321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  400 (482)
                           .+|++.+|++|.+.++...       .|...   . ...      ....+..++++.++++.|++.+    ++++
T Consensus       305 -----~~d~~~~l~~L~~~l~~~~-------~~~~~---~-~~~------~~~~~~~~i~~~~~~~~l~~~l----~~d~  358 (518)
T PRK12474        305 -----DEDLAQALQDLADAVDAPA-------EPAAR---T-PLA------LPALPKGALNSLGVAQLIAHRT----PDQA  358 (518)
T ss_pred             -----CcCHHHHHHHHHHhccccc-------ccccc---c-ccc------ccCCCCCCcCHHHHHHHHHHHC----CCCe
Confidence                 1699999999988765320       01000   0 000      0011234688888999999988    9999


Q ss_pred             EEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          401 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       401 i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      |++.|++ +..|. ..+|+...|++|+.+. +|+|||++|+|||+++|+|+|+||+|+|||||+|++|||||++|||+|+
T Consensus       359 iv~~d~g~~~~~~-~~~~~~~~p~~~~~~~-~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv  436 (518)
T PRK12474        359 IYADEALTSGLFF-DMSYDRARPHTHLPLT-GGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDV  436 (518)
T ss_pred             EEEECCCcCHHHH-HHhhcccCCCCEEccC-CCccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCc
Confidence            9999954 45554 4567878888998775 4999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       437 ~ii  439 (518)
T PRK12474        437 TVV  439 (518)
T ss_pred             EEE
Confidence            875

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=100.00  E-value=6e-82  Score=665.76  Aligned_cols=434  Identities=18%  Similarity=0.203  Sum_probs=356.9

Q ss_pred             cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCC-CcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~-i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      +.+|+|++.|+++||++|||+||+++++|++++.+.+ |++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus         1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~   80 (535)
T TIGR03394         1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN   80 (535)
T ss_pred             CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence            5789999999999999999999999999999998765 999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCCCCC---CC--c-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGRGDF---QE--L-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY  167 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~---q~--~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~  167 (482)
                      ||++||.+++|||+|+|+.++...+++.+   |.  + ||..+|+++|||+.++.+++++++.+++|++.|+++ |||||
T Consensus        81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~-~gPv~  159 (535)
T TIGR03394        81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSAREL-SRPVY  159 (535)
T ss_pred             HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHC-CCCEE
Confidence            99999999999999999999888888764   43  6 488999999999999999999999999999999984 59999


Q ss_pred             EEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590          168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI  247 (482)
Q Consensus       168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~  247 (482)
                      |+||.|++.++++...  ..+.       ....+.+.+..+++++++|++||||+|++|+|+.++++.+++++|||++|+
T Consensus       160 i~iP~Dv~~~~~~~~~--~~~~-------~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~  230 (535)
T TIGR03394       160 LEIPRDMVNAEVEPVP--DDPA-------WPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGV  230 (535)
T ss_pred             EEechhhccCccCCCC--CCCC-------CCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCC
Confidence            9999999988876321  0110       111112234678999999999999999999999999999999999999999


Q ss_pred             cEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590          248 PFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR  319 (482)
Q Consensus       248 pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~  319 (482)
                      ||+||++|||+||++||+|+|.        ..++++++||+||+||+++++++.+.. ..+.++.++||||.|+..++..
T Consensus       231 pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~-~~~~~~~~~I~id~~~~~~~~~  309 (535)
T TIGR03394       231 PVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVS-QRKIDLRRTIHAFDRAVTLGYH  309 (535)
T ss_pred             CEEEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccc-cccCCCCcEEEEeCCEEEECCe
Confidence            9999999999999999999983        356789999999999999987644222 2234567999999999888665


Q ss_pred             C-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590          320 K-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP  398 (482)
Q Consensus       320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  398 (482)
                      . +++.+ +|+..+|++|++.+...     ..+.|.+...    ++.    .....+..++++.++++.|++.+    ++
T Consensus       310 ~~~~~~i-~d~~~~L~~l~~~~~~~-----~~~~~~~~~~----~~~----~~~~~~~~~i~p~~~~~~l~~~l----~~  371 (535)
T TIGR03394       310 VYADIPL-AGLVDALLALLCGLPPS-----DRTTRGKGPH----AYP----RGLQADAEPIAPMDIARAVNDRF----AR  371 (535)
T ss_pred             eECCccH-HHHHHHHHHhhhccccc-----cccccccccc----ccc----cccCCCCCCcCHHHHHHHHHHHh----CC
Confidence            4 47888 78888888888765321     0111111100    000    00011234688888999999999    76


Q ss_pred             C--cEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590          399 A--PILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI  476 (482)
Q Consensus       399 ~--~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~  476 (482)
                      +  .+++.|+++..++...+    .+++|+.++++|+|||++|+|||+++|.| +++|+++|||||+|++|||+|++|||
T Consensus       372 ~~~~ii~~D~G~~~~~~~~~----~~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~  446 (535)
T TIGR03394       372 HGQMPLAADIGDCLFTAMDM----DDAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLG  446 (535)
T ss_pred             CCCEEEEEccCHHHHHHHhc----CCCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcC
Confidence            5  46788855445444332    36789988899999999999999999986 55688999999999999999999999


Q ss_pred             cccccC
Q 011590          477 IMISSI  482 (482)
Q Consensus       477 l~i~~~  482 (482)
                      +|+++|
T Consensus       447 lpv~~v  452 (535)
T TIGR03394       447 IDPIVI  452 (535)
T ss_pred             CCcEEE
Confidence            999875

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=100.00  E-value=6.8e-82  Score=668.06  Aligned_cols=432  Identities=19%  Similarity=0.235  Sum_probs=357.5

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      .|++|+|++.|+++||++|||+||+.+++|++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus         1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~   79 (539)
T TIGR03393         1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAI   79 (539)
T ss_pred             CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHh
Confidence            378999999999999999999999999999999965 58999999999999999999999999 7999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCccc----------CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKD----------FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR  162 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~  162 (482)
                      +||++||.|++|||+|+|+.++..          .+.+.+|++  ..+++++|||+..+ +++++++.+++|++.|.+++
T Consensus        80 ~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~  156 (539)
T TIGR03393        80 NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRER  156 (539)
T ss_pred             hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcC
Confidence            999999999999999999988743          334455653  67999999999866 78999999999999999875


Q ss_pred             CceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCC--CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590          163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGI--VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK  240 (482)
Q Consensus       163 ~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~  240 (482)
                       |||||+||.|++.++++.+.. ...       ...+.+..  ++..+++++++|.+||||+|++|.|++++++.+++.+
T Consensus       157 -gPv~l~iP~Dv~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~  227 (539)
T TIGR03393       157 -RPGYLMLPVDVAAKAVTPPVN-PLV-------THKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQK  227 (539)
T ss_pred             -CCEEEEecccccCCccCCCCc-ccC-------cCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHH
Confidence             999999999999988764211 000       00111111  1235899999999999999999999998999999999


Q ss_pred             HHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590          241 LVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC  312 (482)
Q Consensus       241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d  312 (482)
                      |||++++||++|++|||+||++||+|+|.        ..++++++||+||+||+++++..+.++...|.+ .++|+||.|
T Consensus       228 lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~-~~~I~id~~  306 (539)
T TIGR03393       228 WVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTP-EQTIDVQPH  306 (539)
T ss_pred             HHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCCc-ccEEEEcCC
Confidence            99999999999999999999999999984        355789999999999999987665444323443 689999999


Q ss_pred             chhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 011590          313 KEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDA  391 (482)
Q Consensus       313 ~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  391 (482)
                      +..++... +++.+ +|+..+|++|++.++..         |.+. ......+       ...+..++++..+++.|++.
T Consensus       307 ~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~~~---------~~~~-~~~~~~~-------~~~~~~~l~~~~~~~~l~~~  368 (539)
T TIGR03393       307 AARVGNVWFTGIPM-NDAIETLVELCEHAGLM---------WSSS-GAIPFPQ-------PDESRSALSQENFWQTLQTF  368 (539)
T ss_pred             eEEECceEeCCcCH-HHHHHHHHHHhhhcccc---------cccc-cccCcCC-------CCCCCCccCHHHHHHHHHHh
Confidence            98886543 47777 99999999998876321         3211 0000000       01122358888899999998


Q ss_pred             HhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHH
Q 011590          392 ILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV  471 (482)
Q Consensus       392 l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T  471 (482)
                      +    |++++++.|+++..++.+ +++...+++++.+.++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||
T Consensus       369 l----~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~T  443 (539)
T TIGR03393       369 L----RPGDIILADQGTSAFGAA-DLRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGS  443 (539)
T ss_pred             c----CCCCEEEEccCchhhhhh-hccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHH
Confidence            8    999999998544445544 46777788999888999999999999999999999999999999999999999999


Q ss_pred             HHHcCcccccC
Q 011590          472 WLSCIIMISSI  482 (482)
Q Consensus       472 ~~r~~l~i~~~  482 (482)
                      ++|||+||++|
T Consensus       444 a~~~~lpi~~v  454 (539)
T TIGR03393       444 MLRDKQHPIIL  454 (539)
T ss_pred             HHHcCCCCEEE
Confidence            99999999875

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=100.00  E-value=4.8e-81  Score=594.93  Aligned_cols=459  Identities=25%  Similarity=0.383  Sum_probs=392.2

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      .++|+|++.+.+.++||++|||.||+.++++.+++.+ +.+++|..|||++|++||.||+|.+||||||++|||||++|.
T Consensus        90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNv  169 (675)
T KOG4166|consen   90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNV  169 (675)
T ss_pred             CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCcccc
Confidence            6799999999999999999999999999999999986 579999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      +++|+.|++|++||++++||.+++.+|..+||+.|.+.+-|.+|||.+.+.+.++++.-+++||..|.++|||||.+++|
T Consensus       170 vtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlP  249 (675)
T KOG4166|consen  170 VTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLP  249 (675)
T ss_pred             cchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChh--HHHHHHHhhhhhcccccCCCCCH---HHHHHHHHHHHhCCCCEEEEcCCcccc-ccHHHHHHHHHHh
Q 011590          172 TDVLHQTISVS--EAEKLLKEAESAKETVTQGGIVN---SDIDKAVSLLKEAKKPLIVFGKGAAYA-RAEGELKKLVEST  245 (482)
Q Consensus       172 ~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~a~rpvil~G~g~~~~-~~~~~l~~lae~~  245 (482)
                      .|+..+..-++  ....+|.+   .....-...+++   ..+++++++|+.|||||+++|.|+.++ +.-..|.+|.|++
T Consensus       250 KDvta~~l~~pip~~~~lPsn---~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~  326 (675)
T KOG4166|consen  250 KDVTAQLLIPPIPQAMRLPSN---AYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERT  326 (675)
T ss_pred             HHHHHHHhcCCchhhhcCCch---hhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhh
Confidence            99976653221  11112110   011111112232   579999999999999999999999876 5567899999999


Q ss_pred             CCcEeeCCCCCCCCCCCCCcccc---h----HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCc---------EEEE
Q 011590          246 GIPFLPTPMGKGLLPDTHPLAAT---A----ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK---------FVLV  309 (482)
Q Consensus       246 g~pv~~t~~~~g~~~~~hp~~~G---~----~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~---------ii~i  309 (482)
                      +|||.+|.+|-|.+|+++++.+-   .    ++|+++++|||||++|.||++.- .|+...|.+.++         |||+
T Consensus       327 qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDRV-TGn~s~FAp~Ar~aaae~rggIiHf  405 (675)
T KOG4166|consen  327 QIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDRV-TGNLSAFAPRARRAAAEGRGGIIHF  405 (675)
T ss_pred             cCcceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceecccc-ccchhhhChhhhhhhhcccCceEEE
Confidence            99999999999999999998753   2    57899999999999999999874 677888888888         9999


Q ss_pred             eCCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHH
Q 011590          310 DVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRII  388 (482)
Q Consensus       310 d~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  388 (482)
                      |++|.++++.. +.+.++||+...|..+...++....  ..+..|...++.++++.....  ....++..+.+.++++.|
T Consensus       406 dispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~--~~r~dW~~qin~wK~~fP~sf--~~~tpGe~ikPQ~vIk~L  481 (675)
T KOG4166|consen  406 DISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAE--ELRLDWRNQINVWKQKFPLSF--KEETPGEAIKPQYVIKVL  481 (675)
T ss_pred             ecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcccc--hhhhhHHHHHHHHHHhCCeee--eccCCccccChHHHHHHH
Confidence            99999998764 6899999999999999887776533  245679999888877753211  112345567888899988


Q ss_pred             HHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChH
Q 011590          389 RDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAV  467 (482)
Q Consensus       389 ~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~  467 (482)
                      .++-++. ....|+.+. |.+.+|.+.+ |.-.+|++|+++++.|+||||||+||||++|+|+..||-|.||+||.||.|
T Consensus       482 dk~t~d~-~~kviitTGVGqHQMWAAqf-y~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF~Mt~~  559 (675)
T KOG4166|consen  482 DKLTDDT-GRKVIITTGVGQHQMWAAQF-YNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASFIMTVQ  559 (675)
T ss_pred             HHhccCc-CceEEEeccccHHHHHHHHH-hcccCccceeecCCccccccCcchhhcccccCcccEEEeccCCceeeeehH
Confidence            8776433 223344443 7789988765 477889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCccccc
Q 011590          468 EVEVWLSCIIMISS  481 (482)
Q Consensus       468 eL~T~~r~~l~i~~  481 (482)
                      ||+|+++.++|+.+
T Consensus       560 ELat~rq~~~PVKi  573 (675)
T KOG4166|consen  560 ELATIRQENLPVKI  573 (675)
T ss_pred             hhhhhhhcCCceEE
Confidence            99999999999854

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=100.00  E-value=8.5e-79  Score=649.53  Aligned_cols=447  Identities=14%  Similarity=0.125  Sum_probs=356.4

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      ..++++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus         7 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N   86 (568)
T PRK07449          7 FNTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVAN   86 (568)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHh
Confidence            45899999999999999999999999999999999965 57999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCc--CcHHHHHHHHHHH---hhcCCCce
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI--TEVPKCVAQVLER---AVSGRPGG  165 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~--~~~~~~l~~A~~~---a~~~~~gP  165 (482)
                      +++||++||.+++|||+|+|+++....+++.+|++||.++++++|++..+..+.  +.+...++++++.   |.++++||
T Consensus        87 ~l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GP  166 (568)
T PRK07449         87 LYPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGP  166 (568)
T ss_pred             hhHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999999999999999999777766544  3344444544444   77889999


Q ss_pred             EEEEcCcchhccccC-hhHHHHH-HHhhhhhccc---ccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590          166 CYLDLPTDVLHQTIS-VSEAEKL-LKEAESAKET---VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK  240 (482)
Q Consensus       166 v~l~iP~dv~~~~~~-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~  240 (482)
                      |||+||.|++..+.+ +...... .+..  ....   ...+.+++..+++++++|.+ |||+|++|.|+++++  +++.+
T Consensus       167 V~i~iP~Dv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~~--~~l~~  241 (568)
T PRK07449        167 VHINCPFREPLYPDDDDDTGSPWLAPLG--DWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEEG--QAIAA  241 (568)
T ss_pred             EEEeCCCCCCCCCCCccccccccccccc--ccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHHH--HHHHH
Confidence            999999998654432 1100000 0000  0000   00123455678999999998 999999999997544  89999


Q ss_pred             HHHHhCCcEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590          241 LVESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC  312 (482)
Q Consensus       241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d  312 (482)
                      |||++|+||++|+.+|+.+|++||+++|..        .++++++||+||+||++++++.+.++..  ....++||||.|
T Consensus       242 lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~--~~~~~~i~id~d  319 (568)
T PRK07449        242 LAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLA--DCEPEYWVVDPG  319 (568)
T ss_pred             HHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHh--cCCCCEEEECCC
Confidence            999999999999999999999999999853        2357889999999999986544333321  223499999999


Q ss_pred             chhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 011590          313 KEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDA  391 (482)
Q Consensus       313 ~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  391 (482)
                      +..++..+ +++.+.+|++.+|++ ...   .     ....|.+.+.+.++++........  ...++++..+++.|++.
T Consensus       320 ~~~~~~~~~~~~~i~~d~~~~l~~-~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~l~~~  388 (568)
T PRK07449        320 PGRLDPAHHATRRLTASVATWLEA-HPA---E-----KRKPWLQEWQALNEKAREAVREQL--AEDTFTEAKVAAALADL  388 (568)
T ss_pred             CCcCCCCCCceEEEEEcHHHHHHh-ccc---c-----cchHHHHHHHHHHHHHHHHHHHHh--ccCCccHHHHHHHHHHh
Confidence            99987554 589999999999998 221   1     123576665554444432222111  23568888899999998


Q ss_pred             HhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHH
Q 011590          392 ILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE  470 (482)
Q Consensus       392 l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~  470 (482)
                      +    |++++++.+. .+..++ ..++....+++++.+.++++|||++|+|||+++| |+++||+|+|||||+|++||||
T Consensus       389 l----~~~~iv~~~~g~~~~~~-~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~  462 (568)
T PRK07449        389 L----PEGGQLFVGNSLPVRDV-DAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLL  462 (568)
T ss_pred             C----CCCCeEEEECcHHHHHH-HHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHH
Confidence            8    9889887764 444444 4455666678888888889999999999999999 8999999999999999999999


Q ss_pred             HHHHcCcccccC
Q 011590          471 VWLSCIIMISSI  482 (482)
Q Consensus       471 T~~r~~l~i~~~  482 (482)
                      |++||++|+++|
T Consensus       463 Ta~r~~l~i~iv  474 (568)
T PRK07449        463 LLKQVPAPLTIV  474 (568)
T ss_pred             hhcccCCCeEEE
Confidence            999999999865

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=100.00  E-value=4e-74  Score=592.47  Aligned_cols=412  Identities=16%  Similarity=0.166  Sum_probs=341.2

Q ss_pred             HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 011590           16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG   94 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~a   94 (482)
                      .+++|++.|+++||+||||+||+++.+|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus         2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g   81 (432)
T TIGR00173         2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA   81 (432)
T ss_pred             hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence            4799999999999999999999999999999964 689999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc------HHHHHHHHHHHhhcCCCceEEE
Q 011590           95 LSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        95 i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~------~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      |++|+.+++|||+|+|++++...+++.+|++||.++|+++|||+.+++++++      +++.+++|++.|.++|+|||||
T Consensus        82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l  161 (432)
T TIGR00173        82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI  161 (432)
T ss_pred             HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999998      9999999999999999999999


Q ss_pred             EcCcchhccccChhH-HHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590          169 DLPTDVLHQTISVSE-AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI  247 (482)
Q Consensus       169 ~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~  247 (482)
                      +||.|++..+.+... ...... .+........+.++++.+++++++|.+||||+|++|.|+.++ +.++|.+|||++|+
T Consensus       162 ~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~lae~~~~  239 (432)
T TIGR00173       162 NVPFREPLYPDPLLQPLQPWLR-SGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAALAEALGW  239 (432)
T ss_pred             eCCCCCCCCCCCcccccccccc-cccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHHHHHhCCC
Confidence            999999765542110 000000 000000111223567789999999999999999999999876 88999999999999


Q ss_pred             cEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590          248 PFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR  319 (482)
Q Consensus       248 pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~  319 (482)
                      ||++|+++||.+ ++| +++|..        .++++ ++|+||+||++++++...++.  +.++.++||||.|+..++..
T Consensus       240 PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~vd~d~~~~~~~  314 (432)
T TIGR00173       240 PLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQWL--ARQPAEYWVVDPDPGWLDPS  314 (432)
T ss_pred             eEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHHH--hCCCCcEEEECCCCCccCCC
Confidence            999999999999 789 999854        23456 999999999999876544442  34567999999999998765


Q ss_pred             C-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590          320 K-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP  398 (482)
Q Consensus       320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  398 (482)
                      + +++.+++|++.+|++|.+.++..      ...|.+.+.+..+++........  ++.++++.++++.|++.+    |+
T Consensus       315 ~~~~~~i~~D~~~~l~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~p~~~~~~l~~~l----p~  382 (432)
T TIGR00173       315 HHATTRLEASPAEFAEALAGLLKNP------DAAWLDRWLEAEAKAREALREVL--AEEPLSELSLARALSQLL----PE  382 (432)
T ss_pred             CCceEEEEECHHHHHHHhhhccCCC------ChHHHHHHHHHHHHHHHHHHHHh--ccCCccHHHHHHHHHHhC----CC
Confidence            4 49999999999999998887531      23466555444444332222211  234688889999999998    99


Q ss_pred             CcEEEeCchhHHHHHHHhhhcC-CCCeeecCCCCCcccchHHHHHHHhh
Q 011590          399 APILVSEGANTMDVGRAVLVQT-EPRCRLDAGTWGTMGVGLGYCIAAAI  446 (482)
Q Consensus       399 ~~i~v~eg~~~~~~~~~~~~~~-~~~~~~~~~~~g~mG~~l~~AiGaal  446 (482)
                      |.+++.|++++..+...+++.. .|++++++.++|+|||++|+|||+++
T Consensus       383 d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~  431 (432)
T TIGR00173       383 GAALFVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL  431 (432)
T ss_pred             CCeEEEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence            9999999665554555667775 78999999999999999999999986

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=1.4e-72  Score=554.06  Aligned_cols=440  Identities=22%  Similarity=0.323  Sum_probs=360.1

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .+++++++|+++|++.||+++||+||+.++.|+|.+.+ ++++||.+.||.+|+||||||+|..| .+++++|.|+|...
T Consensus         2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGELS   80 (557)
T COG3961           2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGELS   80 (557)
T ss_pred             CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchhh
Confidence            56899999999999999999999999999999999975 68999999999999999999999999 89999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCC-------CCc-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDF-------QEL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR  162 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~-------q~~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~  162 (482)
                      +++||+.+|++++|||+|+|.+++..+.++.+       .+| .+..|+++++.....+++.++++..++|+++.++..+
T Consensus        81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~  160 (557)
T COG3961          81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQR  160 (557)
T ss_pred             hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhc
Confidence            99999999999999999999998775544321       123 3678999999999999999989999999999999876


Q ss_pred             CceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHH
Q 011590          163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV  242 (482)
Q Consensus       163 ~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~la  242 (482)
                       .||||.+|.|+.+.+++.+ +  .|...   ......+....+.++.++++|+++|||+||+|..+.+.+..+++.+|+
T Consensus       161 -RPvYI~lP~dva~~~~~~p-~--~Pl~~---~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~  233 (557)
T COG3961         161 -RPVYIGLPADVADLPIEAP-L--TPLDL---QLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLI  233 (557)
T ss_pred             -CCeEEEcchHHhcCcCCCC-C--Ccccc---ccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHH
Confidence             8999999999999998865 1  11100   000111122235688889999999999999999999999999999999


Q ss_pred             HHhCCcEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCch
Q 011590          243 ESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE  314 (482)
Q Consensus       243 e~~g~pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~  314 (482)
                      +++++|++++++|||+|+|+||.|+|.+        ..+.++.||+||.+|+.++++++.++...++ ..++|+++.+..
T Consensus       234 ~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~-~~~~i~~~~~~v  312 (557)
T COG3961         234 NATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYK-PANIIEIHPDSV  312 (557)
T ss_pred             HhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecC-cccEEEeccCee
Confidence            9999999999999999999999999964        4578899999999999999998877665554 478999999887


Q ss_pred             hhc-ccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 011590          315 EIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAIL  393 (482)
Q Consensus       315 ~~~-~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  393 (482)
                      .+. .....+    ..+.+|++|+..+..+....+.. .+..      +..    +......+.+++..++++.+.+++ 
T Consensus       313 ~I~~~~f~~l----~m~~~L~~L~~~i~~~~~~~~~~-~~~~------~~p----~~~~~~~~~pLtq~~~w~~~~~fl-  376 (557)
T COG3961         313 KIKDAVFTNL----SMKDALQELAKKIDKRNLSAPPV-AYPA------RTP----PTPYPPANEPLTQEWLWNTVQNFL-  376 (557)
T ss_pred             EecccccCCe----eHHHHHHHHHHHhhhcccCCCCc-cCCC------CCC----CCCCCCCCCcccHHHHHHHHHhhC-
Confidence            663 223333    34788999988887654221100 0000      000    001223456899999999999999 


Q ss_pred             ccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590          394 GVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW  472 (482)
Q Consensus       394 ~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~  472 (482)
                         .++++++.| |.+.+...+..||.  .-.++.+..||++||++|+|+|+++|.|||+||+|+||||||||.||+.|+
T Consensus       377 ---~p~dviiaetGtS~FG~~~~~lP~--~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStm  451 (557)
T COG3961         377 ---KPGDVIIAETGTSFFGALDIRLPK--GATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTM  451 (557)
T ss_pred             ---CCCCEEEEccccccccceeeecCC--CCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHH
Confidence               888888888 66555554443443  347888889999999999999999999999999999999999999999999


Q ss_pred             HHcCccccc
Q 011590          473 LSCIIMISS  481 (482)
Q Consensus       473 ~r~~l~i~~  481 (482)
                      +|++|+.++
T Consensus       452 iR~gl~p~i  460 (557)
T COG3961         452 IRWGLKPII  460 (557)
T ss_pred             HHcCCCcEE
Confidence            999998654

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=100.00  E-value=4.4e-71  Score=641.67  Aligned_cols=456  Identities=16%  Similarity=0.154  Sum_probs=356.6

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      ..++++|++.|+++||+|+||+||+++++|++++.+ .++++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus       301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l  380 (1655)
T PLN02980        301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL  380 (1655)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence            559999999999999999999999999999999965 5799999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcH------HHHHHHHHHHhhcCCCceE
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEV------PKCVAQVLERAVSGRPGGC  166 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~------~~~l~~A~~~a~~~~~gPv  166 (482)
                      +|+++|+.+++|||+|||++++...+++.+|++||..+|+++|||+.++.+++++      .+.+++|++.|+++|||||
T Consensus       381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPV  460 (1655)
T PLN02980        381 PAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPV  460 (1655)
T ss_pred             HHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCE
Confidence            9999999999999999999999999999999999999999999999999999984      5899999999999999999


Q ss_pred             EEEcCcch----hccccChhH---HHH-----HHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcccccc
Q 011590          167 YLDLPTDV----LHQTISVSE---AEK-----LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA  234 (482)
Q Consensus       167 ~l~iP~dv----~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~  234 (482)
                      ||+||.|.    +..+.+...   +..     .+............+.++++.+++++++|.+||||+|++|+|+..+++
T Consensus       461 hL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG~G~~~~~a  540 (1655)
T PLN02980        461 HINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIGAIHTEDDI  540 (1655)
T ss_pred             EEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEcCCCchHHH
Confidence            99999653    221110000   000     000000000001112345678999999999999999999999876555


Q ss_pred             HHHHHHHHHHhCCcEeeCCCC-C------CCCCC--CCCcccchHHH-------HhhhcCCEEEEecCccCcccccCCCC
Q 011590          235 EGELKKLVESTGIPFLPTPMG-K------GLLPD--THPLAATAARS-------LAIGQCDVALVVGARLNWLLHFGEPP  298 (482)
Q Consensus       235 ~~~l~~lae~~g~pv~~t~~~-~------g~~~~--~hp~~~G~~~~-------~~l~~aDlvl~iG~~~~~~~~~g~~~  298 (482)
                      . .+.+|||++|+||++|+++ +      |.||+  +||+++|..+.       ..++++|+||+||++++.....++..
T Consensus       541 ~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~iG~rl~s~~~t~~~~  619 (1655)
T PLN02980        541 W-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSRITSKRVSQMLE  619 (1655)
T ss_pred             H-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEeCCccccHHHHHHHH
Confidence            5 4699999999999999975 4      99999  89999996542       34678999999999997432222222


Q ss_pred             CCCCCCcEEEEeCCchhhcccCC-ceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 011590          299 KWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVV  377 (482)
Q Consensus       299 ~~~~~~~ii~id~d~~~~~~~~~-~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  377 (482)
                      .+.+ .++||||.|+..++..++ ++.+++|+..+++.|.+.....     ....|.+.+.+.+.++........ ....
T Consensus       620 ~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~-~~~~  692 (1655)
T PLN02980        620 KCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPR-----RRSKWHGHLQALDGMVAQEISFQI-HAES  692 (1655)
T ss_pred             hCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCcc-----hhHHHHHHHHHHHHHHHHHHHhhh-hcCC
Confidence            2222 369999999999876554 8999999999999987643211     123576655544443322211110 1122


Q ss_pred             CCCcccHHHHHHHHHhccCCCCcEEEeCchhH-----HHHHH----------HhhhcCCCCeeec-CCCCCcccc--hHH
Q 011590          378 PFNFMTPMRIIRDAILGVGSPAPILVSEGANT-----MDVGR----------AVLVQTEPRCRLD-AGTWGTMGV--GLG  439 (482)
Q Consensus       378 ~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~-----~~~~~----------~~~~~~~~~~~~~-~~~~g~mG~--~l~  439 (482)
                      ++++.++++.|++.+    |+|.+++.|+++.     .|..+          ++++...|++++. ++++|+|||  ++|
T Consensus       693 ~l~~~~v~~~L~~~L----p~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lp  768 (1655)
T PLN02980        693 SLTEPYVAHVISEAL----TSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLS  768 (1655)
T ss_pred             CcchHHHHHHHHHhC----CCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHH
Confidence            577788899998888    9999888875432     22211          1223456777875 678999999  599


Q ss_pred             HHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHc--CcccccC
Q 011590          440 YCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSC--IIMISSI  482 (482)
Q Consensus       440 ~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~--~l~i~~~  482 (482)
                      +|||++++. +++|++|+|||||+|++|||+|++|+  ++||++|
T Consensus       769 aAIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iV  812 (1655)
T PLN02980        769 TAIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTIL  812 (1655)
T ss_pred             HHHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEE
Confidence            999999998 89999999999999999999999995  9999765

>COG3960 Glyoxylate carboligase [General function prediction only]

Probab=100.00  E-value=1.3e-66  Score=483.59  Aligned_cols=452  Identities=28%  Similarity=0.401  Sum_probs=393.4

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhH
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCV   89 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~   89 (482)
                      .+|+.-|+-+..|++.||+..||+||..+.+++.+|+.. +|+.|..||-.+|.+||+||.|++ |..|+|+.||||.-+
T Consensus         2 akmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagt   81 (592)
T COG3960           2 AKMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT   81 (592)
T ss_pred             cchhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCcc
Confidence            567888999999999999999999999999999999865 599999999999999999999964 789999999999999


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD  169 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~  169 (482)
                      .+++|++.|++|++|+|+|||+.|+....+++||.+|..++.+|++||...+..|..++.++++||..+.++|||||.|+
T Consensus        82 dmitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlid  161 (592)
T COG3960          82 DMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLID  161 (592)
T ss_pred             chhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590          170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF  249 (482)
Q Consensus       170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv  249 (482)
                      +|.|+|-.+++-..- .+.+      -+...|.....+.++++.+|.+++||+|++|+|+.+.++.+.+.+|||..|+||
T Consensus       162 lp~dvq~aeiefd~d-~yep------l~~~kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpv  234 (592)
T COG3960         162 LPFDVQVAEIEFDPD-MYEP------LPVYKPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPV  234 (592)
T ss_pred             cccceEEEEEecCcc-ccCc------CCcCCchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcc
Confidence            999999888753211 1110      023344556678899999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-C
Q 011590          250 LPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-K  320 (482)
Q Consensus       250 ~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~  320 (482)
                      +-|.+|-|++|.|||+..|.        ++|.-+-.+|+|+.||.|+... ..|..+.+.++.|+||+|+.|..+++. .
T Consensus       235 iptlmgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanr-htgsv~vyt~gr~fihvdieptqigrvf~  313 (592)
T COG3960         235 IPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANR-HTGSVEVYTEGRKFIHVDIEPTQIGRVFC  313 (592)
T ss_pred             cchhccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhc-ccCceeeeecCceEEEEeccccccceeec
Confidence            99999999999999999996        3567788999999999998765 356666677889999999999999764 5


Q ss_pred             CceeEeccHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590          321 PHLGLVGDAKKVLEMINKEIKDEPF--CLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP  398 (482)
Q Consensus       321 ~~~~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  398 (482)
                      ||+.+++|++..|+.+++...+.+.  ..+.+..|.+++.++++....    +..-+..|+.+.++++++++.+    +.
T Consensus       314 pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~r----kthfd~vp~kpqrvyeemn~~f----gr  385 (592)
T COG3960         314 PDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLR----KTHFDNVPVKPQRVYEEMNKAF----GR  385 (592)
T ss_pred             CccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhh----hcccccCCCCHHHHHHHHHhhc----CC
Confidence            7999999999999998876554422  234667788887655543221    1122457899999999999999    88


Q ss_pred             CcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590          399 APILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII  477 (482)
Q Consensus       399 ~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l  477 (482)
                      |.-+|+. |.+.+ .+.+++...+||.|+.++.-|.+||.+|+|+|...|.|+|.|+.+.||-.|+|-+.||...+|+++
T Consensus       386 d~~yvstiglsqi-a~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~  464 (592)
T COG3960         386 DVCYVTTIGLSQI-AAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKI  464 (592)
T ss_pred             ceeEEEeccHHHH-hhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccC
Confidence            8877776 54444 455678999999999999899999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 011590          478 MIS  480 (482)
Q Consensus       478 ~i~  480 (482)
                      |-+
T Consensus       465 pyi  467 (592)
T COG3960         465 PYI  467 (592)
T ss_pred             ceE
Confidence            964

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.3e-65  Score=491.06  Aligned_cols=457  Identities=21%  Similarity=0.253  Sum_probs=380.4

Q ss_pred             CccCCcHHHHHHHHHHhcC---------CCEEEecCCcC-hHHHHHHHHh-C-CCcEEecCchHHHHHHHHHHHhHhCCc
Q 011590           10 QNAQIDGNTLAAKSLSLFG---------ATHMFGVVGIP-VTSLANRAVQ-L-GVRFIAFHNEQSAGYAASAYGYLTGKP   77 (482)
Q Consensus        10 ~~~~~~~~~~l~~~L~~~G---------v~~vFgvpG~~-~~~l~~al~~-~-~i~~v~~~~E~~A~~~A~g~ar~tgk~   77 (482)
                      .+..+|.+++++++|.++=         |.-||.+.|+. +..+-++|+. + .+.++..+||++.+++|.||+|...|-
T Consensus         3 kTvRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rr   82 (617)
T COG3962           3 KTVRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRR   82 (617)
T ss_pred             ceehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhc
Confidence            3567899999999999863         34688888865 5578899985 3 489999999999999999999987654


Q ss_pred             E--EEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCH--------hhhhccccceeeecCCcCcH
Q 011590           78 G--ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQ--------VEAVKPFSKFAVKAKDITEV  147 (482)
Q Consensus        78 ~--v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~--------~~~~~~~~k~~~~~~~~~~~  147 (482)
                      .  +|-.+.|||++|++++.+.|..+|+|||+|-|+.......+..+|++.|        ...|+|+++|..++++||++
T Consensus        83 r~~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl  162 (617)
T COG3962          83 RIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQL  162 (617)
T ss_pred             eeeEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHH
Confidence            4  4444569999999999999999999999999999777766666665433        36999999999999999999


Q ss_pred             HHHHHHHHHHhhc-CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 011590          148 PKCVAQVLERAVS-GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG  226 (482)
Q Consensus       148 ~~~l~~A~~~a~~-~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G  226 (482)
                      ...+.||++.++. ..+|||-|++|+||+.+.++.+.-+....     ..+..++.|++..++.++++|+++|||+|++|
T Consensus       163 ~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~~FF~~r-----v~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaG  237 (617)
T COG3962         163 MSALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPESFFEKR-----VWRIRRPPPDERELADAAALIKSAKKPLIVAG  237 (617)
T ss_pred             HHHHHHHHHHhCChhhcCceEEEechhhhhhhcCCcHHhhhhh-----hhhccCCCCCHHHHHHHHHHHHhcCCCEEEec
Confidence            9999999999987 47899999999999999987654332221     12467788999999999999999999999999


Q ss_pred             CCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCC
Q 011590          227 KGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPK  299 (482)
Q Consensus       227 ~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~  299 (482)
                      +|+.+|++.++|.+|+|+.|+||+.|..|||.+++|||+++|.       ++|.+.++|||||.||+|+.++++ |....
T Consensus       238 GGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTT-gS~al  316 (617)
T COG3962         238 GGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTT-GSKAL  316 (617)
T ss_pred             CceeechHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEeccccccccc-ccHHH
Confidence            9999999999999999999999999999999999999999984       467888999999999999998865 44445


Q ss_pred             CC-CCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCC--
Q 011590          300 WS-KDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDV--  376 (482)
Q Consensus       300 ~~-~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--  376 (482)
                      |. ++.|++.|+..+.+..+. ..+++++|++..|++|.+.|+...    ....|.++..+.++.|............  
T Consensus       317 F~~~~~k~l~lNV~~~da~K~-~a~~lvaDAr~~L~~L~~~L~g~~----~~~~w~~~~~~~~~~w~~~~~~~~a~~~~l  391 (617)
T COG3962         317 FKNPGVKFLNLNVQPFDAYKH-DALPLVADARAGLEALSEALGGYR----TAAGWTDERERLKAAWDAEADAPTAKNHFL  391 (617)
T ss_pred             hcCCCceEEEeeccccccccc-ccceehhHHHHHHHHHHHHhcccc----cchhHHHHHHHhhhhhhhhccccccccccc
Confidence            54 788999998876554322 358899999999999999998652    2345888777766666544322211111  


Q ss_pred             -CCCCcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEE
Q 011590          377 -VPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVV  454 (482)
Q Consensus       377 -~~~~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi  454 (482)
                       .-.+..+++-.+++..    ++++|+++. |+-.....+ +|....|+.|...++|+.|||-+..++|+|+|.|||.|+
T Consensus       392 nt~ptq~~vigav~~~~----~~~svvvcAAGsLPGdLhk-LW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~  466 (617)
T COG3962         392 NTLPTQTQVIGAVQRTI----SDDSVVVCAAGSLPGDLHK-LWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVY  466 (617)
T ss_pred             ccCccchhHHHHHHhhc----CCCcEEEEeCCCCcHHHHH-HhccCCCCceeeeecccccccccccccccccCCCCCeEE
Confidence             1236678888888888    888988876 666666644 679999999999999999999999999999999999999


Q ss_pred             EEEcchhccCChHHHHHHHHcCcccccC
Q 011590          455 AVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       455 ~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +++|||||||--.||.|.++++..|++|
T Consensus       467 vmVGDGSymMlnSEL~Tsv~~g~Ki~Vv  494 (617)
T COG3962         467 VMVGDGSYMMLNSELATSVMLGKKIIVV  494 (617)
T ss_pred             EEEcccchhhhhHHHHHHHHcCCeEEEE
Confidence            9999999999999999999999998764

>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=100.00  E-value=7.4e-66  Score=504.38  Aligned_cols=444  Identities=20%  Similarity=0.290  Sum_probs=356.6

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .+++.+++|+++|.+.||+++||+||+.++.|+|.|+. ++++++.+.||.+|||+||||||..| .++|++|.|+|...
T Consensus         2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLS   80 (561)
T KOG1184|consen    2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELS   80 (561)
T ss_pred             CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhh
Confidence            46889999999999999999999999999999999985 67999999999999999999999999 99999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCC-------CCc-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDF-------QEL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR  162 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~-------q~~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~  162 (482)
                      +++||+.||++++|||+|+|.+++...+.+.+       .+| -+.+|++.++.|+..+++.+++++.+++|++.|....
T Consensus        81 AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~  160 (561)
T KOG1184|consen   81 ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKES  160 (561)
T ss_pred             hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhc
Confidence            99999999999999999999998876654321       112 2578999999999999999999999999999998754


Q ss_pred             CceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHH
Q 011590          163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV  242 (482)
Q Consensus       163 ~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~la  242 (482)
                       .||||.||.|+.+.+++...+.+.|..   ....+......++.++.+++++..+++|+|++|..+++.++.++..+|+
T Consensus       161 -rPVYi~iP~n~~~~~~~~~~l~~~p~~---~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~  236 (561)
T KOG1184|consen  161 -KPVYIGVPANLADLPVPAFGLLPVPLD---LSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELA  236 (561)
T ss_pred             -CCeEEEeecccccCcCCcccCCCCCcc---cCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHH
Confidence             799999999999999887643222210   0001111122345678889999999999999999999999999999999


Q ss_pred             HHhCCcEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCch
Q 011590          243 ESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE  314 (482)
Q Consensus       243 e~~g~pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~  314 (482)
                      +++++|++.|+++||.+||+||+|.|.+        ..+.++.||++|.+|..++++++.++.. ..++.++++++.|.-
T Consensus       237 ~~~~~p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~-~~k~~~~i~~~~d~v  315 (561)
T KOG1184|consen  237 DATGFPVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSY-LYKKKNAIEFHSDRV  315 (561)
T ss_pred             HhhCCCeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEe-ecCccceEEEecceE
Confidence            9999999999999999999999999964        3578899999999999999988766543 345788999998876


Q ss_pred             hhcc-cCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 011590          315 EIEL-RKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAIL  393 (482)
Q Consensus       315 ~~~~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  393 (482)
                      .+.. ..+.    -+.+.+|++|+.+++........   +       .+............+..+++...+++.++.++ 
T Consensus       316 ~i~~~~f~~----v~mk~~l~~Lak~I~~~~~~~~~---y-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-  380 (561)
T KOG1184|consen  316 KIRNATFGG----VLMKDFLQELAKRIKKNKTSYEN---Y-------VRIPVPEPKPLACPPNAPLRQEWMWNHIQKFL-  380 (561)
T ss_pred             Eeccccccc----eeHHHHHHHHHHhhcccccchhc---c-------cccCCCCCCCCCCCCcchhhHHHHHHHHHhhc-
Confidence            5532 1222    26689999999988754211000   0       00000000001122345678888899999888 


Q ss_pred             ccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590          394 GVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW  472 (482)
Q Consensus       394 ~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~  472 (482)
                         .+.+++++| |.+.+.+.+.-||.  .-.+.....||++||.+|+++|+++|.|+++||+|+|||||++|.||++|+
T Consensus       381 ---~~~d~v~~ETG~S~F~~~~~~fP~--g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStm  455 (561)
T KOG1184|consen  381 ---SSGDVVIAETGDSWFGINQTKFPK--GCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTM  455 (561)
T ss_pred             ---CCCceEEEecccceecceeecccc--ccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHH
Confidence               788888888 55544444433343  335677778999999999999999999999999999999999999999999


Q ss_pred             HHcCccccc
Q 011590          473 LSCIIMISS  481 (482)
Q Consensus       473 ~r~~l~i~~  481 (482)
                      +|.+||..+
T Consensus       456 ir~gl~~~i  464 (561)
T KOG1184|consen  456 IRWGLKPII  464 (561)
T ss_pred             HhcCCCcEE
Confidence            999999753

>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]

Probab=100.00  E-value=1.7e-43  Score=352.82  Aligned_cols=453  Identities=14%  Similarity=0.132  Sum_probs=331.7

Q ss_pred             CCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590            9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG   87 (482)
Q Consensus         9 ~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG   87 (482)
                      ++......+.++++.|.++||++++-+||+...+|.-++.+. +|+++.--+|++|+|+|.|.+|++++|++++||||..
T Consensus         3 ~~~~nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA   82 (566)
T COG1165           3 VSNPNTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTA   82 (566)
T ss_pred             ccchhHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcch
Confidence            344566899999999999999999999999999999988764 8999999999999999999999999999999999999


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc-------HHHHHHHHHHHhhc
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE-------VPKCVAQVLERAVS  160 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~-------~~~~l~~A~~~a~~  160 (482)
                      ++|+.+|+.||...++|+|++|+++|.+.++.|+.|.+||..+|..+++|+..+..|+.       +...-.++...|++
T Consensus        83 ~ANl~PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~  162 (566)
T COG1165          83 VANLYPAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQART  162 (566)
T ss_pred             hhhccHHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999988763       34444566666767


Q ss_pred             CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCC--CC--HHHHHHHHHHHHhCCCCEEEEcCCccccccHH
Q 011590          161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGG--IV--NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG  236 (482)
Q Consensus       161 ~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~  236 (482)
                      ..+||||+++|.+..--+.+++.....++..+-.+.......  .+  ++.+.. . ....+||.+|++|.-..  ...+
T Consensus       163 ~~~GpVHiN~PfrePL~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~rgviv~G~~~~--~e~~  238 (566)
T COG1165         163 PHAGPVHINVPFREPLVPDLEPEGAGTPWGRPLGHWWFYTGPWTVDQGPDLLSE-W-FFWRQKRGVIVAGRMSA--QEGK  238 (566)
T ss_pred             CCCCceEecCCCCccCCCCCCccccccccccccCchhhcCCceeeecccccccc-h-hhhcccCceEEEecCch--hhhH
Confidence            888999999999743222222100000100000000000000  00  111111 2 22356999999998763  5556


Q ss_pred             HHHHHHHHhCCcEeeCCCCC-C-CCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCch
Q 011590          237 ELKKLVESTGIPFLPTPMGK-G-LLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE  314 (482)
Q Consensus       237 ~l~~lae~~g~pv~~t~~~~-g-~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~  314 (482)
                      .+.++|+.+|+|+++.+.+. + -++..+.+..-....+-|.. |.||-+|.++.......|...+ +..+.+.||..+.
T Consensus       239 ~i~~~a~~lg~PilaDplS~lr~~i~~yD~~L~~~~~~~~L~~-d~VI~fG~~~~SK~l~qwl~~~-~~~~~~vvd~~~~  316 (566)
T COG1165         239 GILALANTLGWPILADPLSPLRNYIPCYDLWLANPKAAEKLRP-DIVIQFGSPPTSKRLLQWLADT-EPIEYWVVDPGGG  316 (566)
T ss_pred             HHHHHHHHhCCceecccccccCCCcccchhhhcCchhhhhcCc-cEEEEeCCCcccHHHHHHHhcc-CCCcEEEEcCCCC
Confidence            69999999999999998763 1 13444443333333344555 9999999988654333333322 3368888999887


Q ss_pred             hhcccCC-ceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 011590          315 EIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAIL  393 (482)
Q Consensus       315 ~~~~~~~-~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  393 (482)
                      ..+..+. +..+.+|+..+++.+......       +..|.+++.+..++.+..........  .++..++...|.+.+ 
T Consensus       317 ~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~Wl~~~~~~~~~~~~~v~~~~~~~--~~~e~~~a~~l~~~l-  386 (566)
T COG1165         317 WLDPSHHATTRLSADVATWARSIHPAGRI-------RKPWLDEWLALNEKARQAVRDQLAAE--ALTEAHLAAALADLL-  386 (566)
T ss_pred             cCCcccccceEEEeehhHhHHHhcccccc-------ccHHHHHHHHHHHHHHHHHHHHhccc--CchhhHHHHHHHHhC-
Confidence            7765543 566899999888776544221       34688777666665544433333222  577788888898888 


Q ss_pred             ccCCCCcEEEe-CchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590          394 GVGSPAPILVS-EGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW  472 (482)
Q Consensus       394 ~~~~~~~i~v~-eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~  472 (482)
                         |+++-++. .+..-.++ ..++........+.|.|-.+|..-+++|+|++.+. .+++++++||-||+++.|.|.-.
T Consensus       387 ---p~~~~LFvgNSmpVRdv-d~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~  461 (566)
T COG1165         387 ---PPQDQLFVGNSMPVRDV-DALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLL  461 (566)
T ss_pred             ---CCCCeEEEecCchhhhH-HHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhc
Confidence               76665544 33322333 34455557778888888888989999999999986 68899999999999999999998


Q ss_pred             HHcCcccccC
Q 011590          473 LSCIIMISSI  482 (482)
Q Consensus       473 ~r~~l~i~~~  482 (482)
                      .++..|+++|
T Consensus       462 k~~~~~ltIv  471 (566)
T COG1165         462 KKVPQPLTIV  471 (566)
T ss_pred             CCCCCCeEEE
Confidence            8888887664

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX

Probab=100.00  E-value=2.3e-44  Score=321.00  Aligned_cols=162  Identities=27%  Similarity=0.464  Sum_probs=156.6

Q ss_pred             cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      +++++|++.|+++||+++||+||+.+++|++++.+ .+|++|.+|||++|++||+||+|++|||++|++|+|||++|+++
T Consensus         1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~   80 (164)
T cd07039           1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN   80 (164)
T ss_pred             CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence            57999999999999999999999999999999976 68999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      |+++|+.|++|||+|+|+.+++..+++.+|++||..+++++|||+.++++++++++.+++|++.|.++ +|||||+||.|
T Consensus        81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d  159 (164)
T cd07039          81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAK-RGVAVLILPGD  159 (164)
T ss_pred             HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeChH
Confidence            99999999999999999999998899999999999999999999999999999999999999999995 59999999999


Q ss_pred             hhcc
Q 011590          174 VLHQ  177 (482)
Q Consensus       174 v~~~  177 (482)
                      ++.+
T Consensus       160 v~~~  163 (164)
T cd07039         160 VQDA  163 (164)
T ss_pred             Hhcc
Confidence            9764

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ

>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins

Probab=100.00  E-value=8.6e-43  Score=308.32  Aligned_cols=154  Identities=20%  Similarity=0.284  Sum_probs=149.6

Q ss_pred             HHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH
Q 011590           19 LAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN   97 (482)
Q Consensus        19 ~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~   97 (482)
                      +|++.|+++||+++||+||+.+++|++++.+ .++++|.+|||++|++||+||+|+||||+||++|+|||++|+++||++
T Consensus         2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~   81 (162)
T cd07037           2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE   81 (162)
T ss_pred             hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence            6899999999999999999999999999965 589999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc------HHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           98 GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        98 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~------~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      |+.+++|||+|+|+.+....+++.+|++||..+++++|||+.+++++++      +++.+++|++.|.++|||||||+||
T Consensus        82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP  161 (162)
T cd07037          82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP  161 (162)
T ss_pred             HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence            9999999999999999998899999999999999999999999999999      9999999999999999999999999


Q ss_pred             c
Q 011590          172 T  172 (482)
Q Consensus       172 ~  172 (482)
                      .
T Consensus       162 ~  162 (162)
T cd07037         162 F  162 (162)
T ss_pred             C
Confidence            3

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim

>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=100.00  E-value=4.7e-42  Score=310.07  Aligned_cols=169  Identities=34%  Similarity=0.653  Sum_probs=158.9

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      ||++|+|++.|+++||+|+||+||+.+.+|++++.+. ++++|.++||.+|++||+||+|++|||++|++|+|||++|++
T Consensus         1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~   80 (172)
T PF02776_consen    1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL   80 (172)
T ss_dssp             EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred             CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence            6899999999999999999999999999999999977 799999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCC-CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++|++|+.+++|||+|+|+++....+++.+| ++||.+++++++||++++.+++++++.+++|++.|..+++|||||+||
T Consensus        81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip  160 (172)
T PF02776_consen   81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIP  160 (172)
T ss_dssp             HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred             HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence            9999999999999999999999999999999 899999999999999999999999999999999998889999999999


Q ss_pred             cchhccccChh
Q 011590          172 TDVLHQTISVS  182 (482)
Q Consensus       172 ~dv~~~~~~~~  182 (482)
                      .|++.++++++
T Consensus       161 ~dv~~~~~~~~  171 (172)
T PF02776_consen  161 QDVQEAEVDEP  171 (172)
T ss_dssp             HHHHTSEEECT
T ss_pred             hhHhhCccCCC
Confidence            99999998754

It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins

Probab=100.00  E-value=3.4e-39  Score=287.34  Aligned_cols=153  Identities=25%  Similarity=0.395  Sum_probs=143.2

Q ss_pred             HHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 011590           18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS   96 (482)
Q Consensus        18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~   96 (482)
                      |+|++.|+++||+||||+||+.+++|++++.+. +|++|.++||++|++||+||+|+| ||+||++|+|||++|+++||+
T Consensus         1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~   79 (162)
T cd07038           1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA   79 (162)
T ss_pred             CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence            579999999999999999999999999999654 899999999999999999999999 899999999999999999999


Q ss_pred             HhhhCCCcEEEEeCCCCcccCCCCCC-------CCc-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           97 NGMINTWPIVMISGSCDQKDFGRGDF-------QEL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        97 ~A~~~~~Pvl~i~g~~~~~~~~~~~~-------q~~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      +|+.|++|||+|+|+++....+++..       |++ ||.++++++|||+.++++++++++.+++|++.|.++| |||||
T Consensus        80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l  158 (162)
T cd07038          80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI  158 (162)
T ss_pred             HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence            99999999999999999887777542       334 5899999999999999999999999999999999987 99999


Q ss_pred             EcCc
Q 011590          169 DLPT  172 (482)
Q Consensus       169 ~iP~  172 (482)
                      +||.
T Consensus       159 ~iP~  162 (162)
T cd07038         159 EIPR  162 (162)
T ss_pred             EccC
Confidence            9994

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins

Probab=100.00  E-value=3.3e-36  Score=267.62  Aligned_cols=155  Identities=36%  Similarity=0.651  Sum_probs=150.5

Q ss_pred             HHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH
Q 011590           18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN   97 (482)
Q Consensus        18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~   97 (482)
                      |+|++.|+++||+++||+||+.+.++++++.+.++++|.++||.+|++||+||+|.+||+++|++|+|||++|++++|++
T Consensus         1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~   80 (155)
T cd07035           1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN   80 (155)
T ss_pred             CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence            57999999999999999999999999999987789999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           98 GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        98 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      |+.+++|||+|+|+++....++..+|+.||..++++++||+.++++++++.+.+++|++.|.++|+|||||+||.
T Consensus        81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~  155 (155)
T cd07035          81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK  155 (155)
T ss_pred             HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence            999999999999999999999888999999999999999999999999999999999999999988999999984

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins

Probab=99.98  E-value=6.8e-32  Score=241.16  Aligned_cols=152  Identities=18%  Similarity=0.116  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      ++|+|++.|+++||+++||+||+.++++++++.+     .++++|.++||++|++||+||+|.+++  +|++|+|||++|
T Consensus         1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n   78 (160)
T cd07034           1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL   78 (160)
T ss_pred             ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence            4799999999999999999999999999999963     579999999999999999999998776  999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      ++++|++|+.+++|||+|+|+.+....+  ...+|++|+..++++ +||+.++.+++++++.+++|++.|.++| +||+|
T Consensus        79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l  156 (160)
T cd07034          79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV  156 (160)
T ss_pred             HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence            9999999999999999999999988766  446777999999999 9999999999999999999999999998 89999


Q ss_pred             EcC
Q 011590          169 DLP  171 (482)
Q Consensus       169 ~iP  171 (482)
                      .+.
T Consensus       157 ~~~  159 (160)
T cd07034         157 LSD  159 (160)
T ss_pred             EcC
Confidence            763

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

Probab=99.97  E-value=8.7e-30  Score=226.10  Aligned_cols=153  Identities=21%  Similarity=0.366  Sum_probs=144.9

Q ss_pred             HHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 011590           18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS   96 (482)
Q Consensus        18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~   96 (482)
                      ++|++.|+++||+++||+||+...++++++.+ .+++++.++||++|++||+||+|.++ ++++++++|||++|++++|.
T Consensus         1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~   79 (154)
T cd06586           1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA   79 (154)
T ss_pred             ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence            47899999999999999999999999999875 57999999999999999999999998 99999999999999999999


Q ss_pred             HhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        97 ~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +|+.+++|||+|+++++....+.+.+|+.|+..++++++||..+++++++..+.+.+|++.|.++ +|||||++|.
T Consensus        80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~  154 (154)
T cd06586          80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR  154 (154)
T ss_pred             HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence            99999999999999998877677789999999999999999999999999999999999999988 7999999984

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca

>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit

Probab=99.95  E-value=3.7e-28  Score=214.03  Aligned_cols=146  Identities=18%  Similarity=0.153  Sum_probs=126.7

Q ss_pred             HHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 011590           18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS   96 (482)
Q Consensus        18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~   96 (482)
                      |++++.|+++||+++||+||+.+++|++++. .+|++| .+|||+++++||++| |.+|++++|++++|+|  |++++|+
T Consensus         2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~-~~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~   77 (157)
T TIGR03845         2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIE-KDFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA   77 (157)
T ss_pred             hHHHHHHHHCCCeEEEecCcHhHHHHHHHHH-hCCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence            6899999999999999999999999999995 459999 889999999998888 9999999999988876  9999999


Q ss_pred             Hhh-hCCCcEEEEeCCCCc------ccCCCCCCCCc--CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590           97 NGM-INTWPIVMISGSCDQ------KDFGRGDFQEL--DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY  167 (482)
Q Consensus        97 ~A~-~~~~Pvl~i~g~~~~------~~~~~~~~q~~--d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~  167 (482)
                      +|+ .+++|||+|+|++..      ...+.+.+++.  ++..+      ++.++.+++++ +.+++|++.|.++| |||+
T Consensus        78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i------~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~  149 (157)
T TIGR03845        78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGI------PYTIPREPEEA-KLIEKAISDAYENS-RPVA  149 (157)
T ss_pred             HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCC------CeEEeCCHHHH-HHHHHHHHHHHhCC-CCEE
Confidence            999 999999999999877      44444444432  33322      68899999999 99999999999998 9999


Q ss_pred             EEcCcchh
Q 011590          168 LDLPTDVL  175 (482)
Q Consensus       168 l~iP~dv~  175 (482)
                      |.++.+++
T Consensus       150 il~~~~~~  157 (157)
T TIGR03845       150 ALLDPKYW  157 (157)
T ss_pred             EEEeCCcC
Confidence            99998763

This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=99.93  E-value=8.5e-26  Score=196.27  Aligned_cols=129  Identities=40%  Similarity=0.658  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCE
Q 011590          208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDV  280 (482)
Q Consensus       208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDl  280 (482)
                      +++++++|++||||+|++|.++.++++.+++.+|+|++|+||++++++||+||++||+|+|.       ..++++++||+
T Consensus         1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl   80 (137)
T PF00205_consen    1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL   80 (137)
T ss_dssp             HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred             CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence            57899999999999999999999999999999999999999999999999999999999983       35688999999


Q ss_pred             EEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEeccHHHHHHHH
Q 011590          281 ALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAKKVLEMI  336 (482)
Q Consensus       281 vl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~D~~~~l~~L  336 (482)
                      ||++|++++++.++++...|.++.++||||.|+.+++..+ +++.+++|++.+|++|
T Consensus        81 vl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L  137 (137)
T PF00205_consen   81 VLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL  137 (137)
T ss_dssp             EEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred             EEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence            9999999999888776556776679999999999998665 6999999999999986

It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=99.92  E-value=1.2e-24  Score=216.44  Aligned_cols=146  Identities=19%  Similarity=0.241  Sum_probs=104.4

Q ss_pred             CCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCC-cEEEEEcCChh-hHhhHHHHHHhhhCCC
Q 011590           28 GATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGK-PGILLTVSGPG-CVHGLAGLSNGMINTW  103 (482)
Q Consensus        28 Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk-~~v~~~t~GpG-~~N~~~ai~~A~~~~~  103 (482)
                      ||++++|+|++...+|++.+.+  ..+++|.+.+|..|+.+|.||+..||| |.|.+..||.| +.|.++.|+.....++
T Consensus         1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i   80 (361)
T TIGR03297         1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI   80 (361)
T ss_pred             CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence            7999999999999999999973  379999999999999999999999776 45555778887 6666677777899999


Q ss_pred             cEEEEeCCCCcccCCCCCCCCcC----Hhhhhcccc-ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590          104 PIVMISGSCDQKDFGRGDFQELD----QVEAVKPFS-KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus       104 Pvl~i~g~~~~~~~~~~~~q~~d----~~~~~~~~~-k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      |+++|.|.+......... |..-    ...+++.+- +|....++.++..+.+++|++.+.... .|+.+.++.+.+
T Consensus        81 P~l~~i~~RG~~g~~dep-qh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~-~p~a~l~~~~~~  155 (361)
T TIGR03297        81 PLLLIVGWRGEPGVHDEP-QHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATS-RPYALVVRKGTF  155 (361)
T ss_pred             CeeEEEecCCCCCCCCCc-hhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHC-CCEEEEEccccc
Confidence            999999998554222221 2211    122333322 333333455667777777777776643 677777776654

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=99.89  E-value=1.2e-21  Score=209.37  Aligned_cols=414  Identities=17%  Similarity=0.117  Sum_probs=234.5

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      -++|.++++..+.+.|++.+.|+||++..++++.+.+    .++.+....+|.+|..||.|-+.+..|  ++..|+|||+
T Consensus         4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~r--a~t~ts~~Gl   81 (595)
T TIGR03336         4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLR--AFCTMKHVGL   81 (595)
T ss_pred             eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcc--eEEEccCCch
Confidence            5799999999999999999999999999999998753    358888999999999999999998766  6677999998


Q ss_pred             HhhHHHHHHhh--hCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhcccccee-eecCCcCcHHHHHHHHHHHhhcCCCce
Q 011590           89 VHGLAGLSNGM--INTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGG  165 (482)
Q Consensus        89 ~N~~~ai~~A~--~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~-~~~~~~~~~~~~l~~A~~~a~~~~~gP  165 (482)
                      .=+.-.|..+-  --+.|++++.++.+....-+   .+.|-+...+ .++|- ....+++++.+...+||+.|...+ -|
T Consensus        82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~~---~~q~d~~~~~-~~~~~vl~p~~~qE~~d~~~~Af~lae~~~-~P  156 (595)
T TIGR03336        82 NVAADPLMTLAYTGVKGGLVVVVADDPSMHSSQ---NEQDTRHYAK-FAKIPCLEPSTPQEAKDMVKYAFELSEKFG-LP  156 (595)
T ss_pred             hhhHHHhhhhhhhcCcCceEEEEccCCCCccch---hhHhHHHHHH-hcCCeEECCCCHHHHHHHHHHHHHHHHHHC-CC
Confidence            66655554433  34788999999875443111   1111122222 23443 445677889999999999999866 78


Q ss_pred             EEEEcCcchhccccC--hhHH---HHHH-HhhhhhcccccCCCCC---H----HHHHHHHHHHHhCCCC--------EEE
Q 011590          166 CYLDLPTDVLHQTIS--VSEA---EKLL-KEAESAKETVTQGGIV---N----SDIDKAVSLLKEAKKP--------LIV  224 (482)
Q Consensus       166 v~l~iP~dv~~~~~~--~~~~---~~~~-~~~~~~~~~~~~~~~~---~----~~~~~~~~~L~~a~rp--------vil  224 (482)
                      |.+....-+-...-+  ....   .... .+.+..+ ....+...   .    +.++++.+.....+..        +.|
T Consensus       157 V~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~i  235 (595)
T TIGR03336       157 VILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPER-YVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGV  235 (595)
T ss_pred             EEEEEeeeeccceeeEecCCCcccccccCCCCChhh-cCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEE
Confidence            988886544322211  0000   0000 0000000 00000000   0    1122222221221111        445


Q ss_pred             EcCCccccccHHHHHHHHHHhCCc--EeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCC-CCC-
Q 011590          225 FGKGAAYARAEGELKKLVESTGIP--FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP-PKW-  300 (482)
Q Consensus       225 ~G~g~~~~~~~~~l~~lae~~g~p--v~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~-~~~-  300 (482)
                      +..|..    .....+.++.+|+.  |+.       +..-.|+--- ...+++++.+.||++=-....   .+.. ..+ 
T Consensus       236 v~~G~~----~~~a~ea~~~~Gi~~~v~~-------~~~i~Pld~~-~i~~~~~~~~~vivvEe~~~~---~~~~~~~~~  300 (595)
T TIGR03336       236 IASGIA----YNYVKEALERLGVDVSVLK-------IGFTYPVPEG-LVEEFLSGVEEVLVVEELEPV---VEEQVKALA  300 (595)
T ss_pred             EEcCHH----HHHHHHHHHHcCCCeEEEE-------eCCCCCCCHH-HHHHHHhcCCeEEEEeCCccH---HHHHHHHHH
Confidence            555532    22233334444543  221       1111232211 234567788888888433210   0000 000 


Q ss_pred             -CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCC--C
Q 011590          301 -SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDV--V  377 (482)
Q Consensus       301 -~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~  377 (482)
                       ..+.++..+.....    +-+ -...=|.+.+.+.|.+. ...+ .....+.    +.   ..    +.  ..++.  .
T Consensus       301 ~~~~~~v~~~G~~d~----fi~-~~~~Ld~~~i~~~i~~~-~~~~-~~~~~~~----~~---~~----~~--~r~~~~C~  360 (595)
T TIGR03336       301 GTAGLNIKVHGKEDG----FLP-REGELNPDIVVNALAKF-GLAP-SVTHEKP----VP---KP----LP--VRPPSLCA  360 (595)
T ss_pred             HhcCCCeEEecccCC----ccC-cccCcCHHHHHHHHHHh-CCCc-ccccccc----cc---cc----cC--CCCCCCCC
Confidence             00112323322211    101 11112555555555442 2110 0000000    00   00    00  00011  1


Q ss_pred             CCCcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEE
Q 011590          378 PFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV  456 (482)
Q Consensus       378 ~~~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~  456 (482)
                      .-....+++.|++.+    |++.+++.|+ .+..+.       ..|+.++.+  +++||+++|+|+|+++|.|+++||++
T Consensus       361 GCp~~~~~~~l~~~l----~~d~ivv~D~G~~~~~~-------~~p~~~~~~--~~~mG~~~~~AiGa~~a~p~~~Vv~i  427 (595)
T TIGR03336       361 GCPHRATFYAMKKVA----DREAIFPSDIGCYTLGI-------QPPLGTVDT--TLCMGASIGVASGLSKAGEKQRIVAF  427 (595)
T ss_pred             CCCChHHHHHHHHhc----cCCcEEecCcchhhccc-------cCCccccce--eeccCchHHHHhhhhhcCCCCCEEEE
Confidence            123355788888888    9999999984 443321       124555543  58999999999999999999999999


Q ss_pred             EcchhccCC-hHHHHHHHHcCcccccC
Q 011590          457 EGDSGFGFS-AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       457 ~GDGsf~~~-~~eL~T~~r~~l~i~~~  482 (482)
                      +|||+|+|+ +|||+|++|+++|+++|
T Consensus       428 ~GDG~f~~~g~~eL~tav~~~~~i~~v  454 (595)
T TIGR03336       428 IGDSTFFHTGIPGLINAVYNKANITVV  454 (595)
T ss_pred             eccchhhhcCHHHHHHHHHcCCCeEEE
Confidence            999999998 99999999999999865

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=99.89  E-value=3.6e-23  Score=191.61  Aligned_cols=101  Identities=24%  Similarity=0.284  Sum_probs=90.4

Q ss_pred             CCCCcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEE
Q 011590          377 VPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVA  455 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~  455 (482)
                      .++++.++++.|++.+    |+++|++.|+ .+..|..+ +++...|++|+.++++|+|||++|+|||+++|+|+|+||+
T Consensus         6 ~~l~~~~~~~~l~~~l----~~d~iiv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~   80 (202)
T cd02006           6 VPIKPQRVYEEMNKAF----GRDVRYVTTIGLSQIAGAQ-MLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVA   80 (202)
T ss_pred             CCcCHHHHHHHHHhhC----CCCeEEEECCcHHHHHHHH-hcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEE
Confidence            4688888999999988    9999999994 45556555 4688889999999889999999999999999999999999


Q ss_pred             EEcchhccCChHHHHHHHHcCcccccC
Q 011590          456 VEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       456 ~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+|||||+|++|||+|++||++|+++|
T Consensus        81 i~GDG~f~m~~~eL~Ta~~~~lpviiv  107 (202)
T cd02006          81 LSGDYDFQFMIEELAVGAQHRIPYIHV  107 (202)
T ss_pred             EEeChHhhccHHHHHHHHHhCCCeEEE
Confidence            999999999999999999999999875

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=99.88  E-value=1.2e-22  Score=186.99  Aligned_cols=101  Identities=23%  Similarity=0.348  Sum_probs=89.9

Q ss_pred             CCCCcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEE
Q 011590          377 VPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVA  455 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~  455 (482)
                      +++++.++++.|++.+    |++++++.|+ .+..|.. .+|+...|++|+.++++|+|||++|+|||+++|.|+|+||+
T Consensus         2 ~~l~~~~~~~~l~~~l----~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~   76 (196)
T cd02013           2 NPMHPRQVLRELEKAM----PEDAIVSTDIGNICSVAN-SYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVA   76 (196)
T ss_pred             CCCCHHHHHHHHHHHC----CCCEEEEECCcHHHHHHH-HhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEE
Confidence            4577788899999988    9999999984 4556554 45688889999999899999999999999999999999999


Q ss_pred             EEcchhccCChHHHHHHHHcCcccccC
Q 011590          456 VEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       456 ~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++|||||+|++|||+|++||++|+++|
T Consensus        77 i~GDG~f~m~~~eL~Ta~~~~lpvi~v  103 (196)
T cd02013          77 IAGDGAWGMSMMEIMTAVRHKLPVTAV  103 (196)
T ss_pred             EEcchHHhccHHHHHHHHHhCCCeEEE
Confidence            999999999999999999999999865

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=99.85  E-value=2.4e-21  Score=177.17  Aligned_cols=98  Identities=21%  Similarity=0.364  Sum_probs=86.1

Q ss_pred             CcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEc
Q 011590          380 NFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEG  458 (482)
Q Consensus       380 ~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~G  458 (482)
                      ++..+++.|++.+    |++++++.|+ .+..|..+ +++...|++|+.++++|+|||++|+|||+++|.|+++||+++|
T Consensus         2 ~~~~~~~~l~~~l----~~~~iiv~d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~G   76 (186)
T cd02015           2 KPQEVIKELSELT----PGDAIVTTDVGQHQMWAAQ-YYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDG   76 (186)
T ss_pred             CHHHHHHHHHhhC----CCCeEEEeCCcHHHHHHHH-hcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEc
Confidence            4456788888888    9999999995 45555544 5677889999999889999999999999999999999999999


Q ss_pred             chhccCChHHHHHHHHcCcccccC
Q 011590          459 DSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       459 DGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ||||+|+.|||+|++||++|+++|
T Consensus        77 DG~f~~~~~eL~ta~~~~lpi~iv  100 (186)
T cd02015          77 DGSFQMNIQELATAAQYNLPVKIV  100 (186)
T ss_pred             ccHHhccHHHHHHHHHhCCCeEEE
Confidence            999999999999999999999764

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=99.85  E-value=2.4e-21  Score=175.35  Aligned_cols=96  Identities=27%  Similarity=0.363  Sum_probs=85.2

Q ss_pred             ccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590          382 MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS  460 (482)
Q Consensus       382 ~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDG  460 (482)
                      .++++.|++.+    |++++++.| |.+..|.. .+|+...|++|+.++++|+|||++|+|+|+++|+|+++||+|+|||
T Consensus         2 ~~~~~~l~~~l----~~~~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG   76 (177)
T cd02010           2 QRIVHDLRAVM----GDDDIVLLDVGAHKIWMA-RYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDG   76 (177)
T ss_pred             HHHHHHHHHHC----CCCcEEEecCcHHHHHHH-HhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcch
Confidence            34678888888    999999988 55566654 4568888899999999999999999999999999999999999999


Q ss_pred             hccCChHHHHHHHHcCcccccC
Q 011590          461 GFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       461 sf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ||+|+.|||+|++||++|+++|
T Consensus        77 ~f~m~~~eL~ta~~~~l~vi~v   98 (177)
T cd02010          77 GFMMNSQELETAVRLKIPLVVL   98 (177)
T ss_pred             HHHhHHHHHHHHHHHCCCeEEE
Confidence            9999999999999999999875

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=99.83  E-value=7.6e-21  Score=176.32  Aligned_cols=95  Identities=17%  Similarity=0.226  Sum_probs=84.7

Q ss_pred             cHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590          383 TPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG  461 (482)
Q Consensus       383 ~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs  461 (482)
                      ++++.|++.+    |++++++.| |.+..|..+ +|+...|++|+.++++|+|||++|+|||+++|.|+++||+++||||
T Consensus         3 ~~~~~l~~~l----~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGs   77 (205)
T cd02003           3 EVLGALNEAI----GDDDVVINAAGSLPGDLHK-LWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGS   77 (205)
T ss_pred             hHHHHHHHhC----CCCCEEEECCCcchHHHHH-hCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccch
Confidence            4677888888    999999998 556666654 4687889999999899999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHcCcccccC
Q 011590          462 FGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       462 f~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+|+.|||+|++||++|+++|
T Consensus        78 f~m~~~eL~Ta~~~~lpv~iv   98 (205)
T cd02003          78 YLMLHSEIVTAVQEGLKIIIV   98 (205)
T ss_pred             hhccHHHHHHHHHcCCCCEEE
Confidence            999999999999999999765

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

Probab=99.83  E-value=1e-20  Score=172.15  Aligned_cols=100  Identities=20%  Similarity=0.316  Sum_probs=88.0

Q ss_pred             CCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEE
Q 011590          378 PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE  457 (482)
Q Consensus       378 ~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~  457 (482)
                      |+++.++++.|++.+    ++++|++.|.++..+..+ +++...+++|+.++++|+|||++|+|+|+++|.|+++|++++
T Consensus         1 ~l~~~~~~~~l~~~l----~~~~iiv~d~g~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~   75 (183)
T cd02005           1 PLTQARLWQQVQNFL----KPNDILVAETGTSWFGAL-DLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLV   75 (183)
T ss_pred             CCCHHHHHHHHHHhc----CCCCEEEECCchHHHhhh-hccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEE
Confidence            456777899999988    999999999544445544 457778899999999999999999999999999999999999


Q ss_pred             cchhccCChHHHHHHHHcCcccccC
Q 011590          458 GDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       458 GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |||||+|+.|||+|++||++|+++|
T Consensus        76 GDG~f~~~~~el~ta~~~~~p~~iv  100 (183)
T cd02005          76 GDGSFQMTVQELSTMIRYGLNPIIF  100 (183)
T ss_pred             CCchhhccHHHHHHHHHhCCCCEEE
Confidence            9999999999999999999999875

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=99.82  E-value=2.2e-20  Score=168.70  Aligned_cols=96  Identities=44%  Similarity=0.704  Sum_probs=84.8

Q ss_pred             ccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590          382 MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS  460 (482)
Q Consensus       382 ~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDG  460 (482)
                      .++++.|++.+    |++++++.| |.+..|. ..+|+...|++++.++++|+|||++|+|||++++.|+++|++++|||
T Consensus         2 ~~~~~~l~~~l----~~~~iiv~d~g~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG   76 (172)
T cd02004           2 YRVLHELQEAL----PDDAIIVSDGGNTMDWA-RYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDG   76 (172)
T ss_pred             HHHHHHHHHHC----CCCcEEEEcCchHHHHH-HHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcch
Confidence            35678888888    999999999 4555555 45568888999999988999999999999999999999999999999


Q ss_pred             hccCChHHHHHHHHcCcccccC
Q 011590          461 GFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       461 sf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ||+|+.|||+|++|+++|+++|
T Consensus        77 ~f~~~~~el~ta~~~~lpv~iv   98 (172)
T cd02004          77 AFGFSGMELETAVRYNLPIVVV   98 (172)
T ss_pred             hhcCCHHHHHHHHHcCCCEEEE
Confidence            9999999999999999998764

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=99.82  E-value=1.1e-20  Score=170.90  Aligned_cols=96  Identities=10%  Similarity=0.051  Sum_probs=83.9

Q ss_pred             ccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhc-CCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590          382 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS  460 (482)
Q Consensus       382 ~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDG  460 (482)
                      ..+++.|++.+    |++.+++.|++++..+...+++. ..|++|+.+.++|+|||++|+|||+++|. +|+||+|+|||
T Consensus         4 ~~~~~~l~~~l----~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDG   78 (175)
T cd02009           4 PALARALPDHL----PEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDL   78 (175)
T ss_pred             HHHHHHHHHhC----CCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehH
Confidence            34677888888    99999999965544444556787 78999999999999999999999999998 99999999999


Q ss_pred             hccCChHHHHHHHHcCcccccC
Q 011590          461 GFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       461 sf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ||+|++|||+|++||++|+++|
T Consensus        79 sf~m~~~eL~ta~~~~l~v~iv  100 (175)
T cd02009          79 SFLHDLNGLLLGKQEPLNLTIV  100 (175)
T ss_pred             HHHHhHHHHHhccccCCCeEEE
Confidence            9999999999999999999865

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=99.81  E-value=5.9e-20  Score=166.74  Aligned_cols=99  Identities=23%  Similarity=0.280  Sum_probs=87.2

Q ss_pred             CCcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEE
Q 011590          379 FNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE  457 (482)
Q Consensus       379 ~~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~  457 (482)
                      +++.++++.|++.+    +++++++.| |.+..+..+ +|+...|++|+.++++|+|||++|+|+|+++++|+++||+++
T Consensus         2 ~~~~~~~~~l~~~~----~~~~ii~~d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~   76 (178)
T cd02014           2 IHPERVAAELNKRA----PDDAIFTIDVGNVTVWAAR-HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALS   76 (178)
T ss_pred             CCHHHHHHHHHhHC----CCCeEEEEcCcHHHHHHHH-hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            45667888888888    999999888 555555544 568888999999999999999999999999999999999999


Q ss_pred             cchhccCChHHHHHHHHcCcccccC
Q 011590          458 GDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       458 GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |||||+|+.|||+|++|+++|+++|
T Consensus        77 GDG~f~~~~~el~t~~~~~lp~~~i  101 (178)
T cd02014          77 GDGGFAMLMGDLITAVKYNLPVIVV  101 (178)
T ss_pred             cchHHHhhHHHHHHHHHhCCCcEEE
Confidence            9999999999999999999998764

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=99.78  E-value=2.3e-19  Score=163.10  Aligned_cols=97  Identities=25%  Similarity=0.331  Sum_probs=84.8

Q ss_pred             CcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEc
Q 011590          380 NFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEG  458 (482)
Q Consensus       380 ~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~G  458 (482)
                      ++.++++.|++.+    |++++++.|+ .+..|. ..+++...|++++.+.+ |+||+++|+|+|+++|.|+++|++++|
T Consensus         2 ~~~~~~~~l~~~l----~~~~~iv~d~g~~~~~~-~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~G   75 (178)
T cd02002           2 TPEYLAAALAAAL----PEDAIIVDEAVTNGLPL-RDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIG   75 (178)
T ss_pred             CHHHHHHHHHhhC----CCCeEEEecCCcccHHH-HHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEc
Confidence            3456788888888    9999999994 555555 55668778899999888 999999999999999999999999999


Q ss_pred             chhccCChHHHHHHHHcCcccccC
Q 011590          459 DSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       459 DGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ||+|+|+.+||+|++++++|+++|
T Consensus        76 DG~f~~~~~el~ta~~~~~p~~~i   99 (178)
T cd02002          76 DGSFMYTIQALWTAARYGLPVTVV   99 (178)
T ss_pred             CchhhccHHHHHHHHHhCCCeEEE
Confidence            999999999999999999999865

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>PRK06163 hypothetical protein; Provisional

Probab=99.74  E-value=3.8e-18  Score=156.72  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             CCCCcccHHHHHHHHHhccCCCCcEEEeCch---hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcE
Q 011590          377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGA---NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLV  453 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~---~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~v  453 (482)
                      -.++..++++.|++.+    +++++++.|.+   +..|..+     ..++.++   .+|+|||++|+|+|+++|.|+++|
T Consensus        11 ~~~~~~~~i~~l~~~l----~~~~~iv~D~G~~~~~~~~~~-----~~~~~~~---~~GsMG~glpaAiGaalA~p~r~V   78 (202)
T PRK06163         11 KVMNRFDLTCRLVAKL----KDEEAVIGGIGNTNFDLWAAG-----QRPQNFY---MLGSMGLAFPIALGVALAQPKRRV   78 (202)
T ss_pred             CCcCHHHHHHHHHHhc----CCCCEEEECCCccHHHHHHhh-----cCCCCeE---eecccccHHHHHHHHHHhCCCCeE
Confidence            4567777888888888    88888888854   3344332     2455665   389999999999999999999999


Q ss_pred             EEEEcchhccCChHHHHHHHHc-CcccccC
Q 011590          454 VAVEGDSGFGFSAVEVEVWLSC-IIMISSI  482 (482)
Q Consensus       454 i~~~GDGsf~~~~~eL~T~~r~-~l~i~~~  482 (482)
                      |+|+|||||+|++|||+|++|| ++|+++|
T Consensus        79 v~i~GDG~f~m~~~eL~Ta~~~~~lpi~iv  108 (202)
T PRK06163         79 IALEGDGSLLMQLGALGTIAALAPKNLTII  108 (202)
T ss_pred             EEEEcchHHHHHHHHHHHHHHhcCCCeEEE
Confidence            9999999999999999999987 6888765

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=99.70  E-value=1.1e-17  Score=148.21  Aligned_cols=76  Identities=34%  Similarity=0.470  Sum_probs=69.1

Q ss_pred             chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       406 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |.++.|..+ +|+...|++|+.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++||++|+++|
T Consensus         3 G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~v   78 (153)
T PF02775_consen    3 GCHTMWAAQ-YLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIV   78 (153)
T ss_dssp             SHHHHHHHH-HSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEE
T ss_pred             ChhHHHHHH-hcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEE
Confidence            667777655 4688889999999999999999999999999999999999999999999999999999999999875

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=99.69  E-value=4.8e-17  Score=144.05  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhccCCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590          384 PMRIIRDAILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF  462 (482)
Q Consensus       384 ~~~~l~~~l~~~~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf  462 (482)
                      +++.|.+.+    + |++++.|.+ +..++   ++....|++|+.   +|+|||++|+|+|+++|.| ++||+|+|||||
T Consensus         4 ~~~~l~~~l----~-d~~vv~d~G~~~~~~---~~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f   71 (157)
T cd02001           4 AIAEIIEAS----G-DTPIVSTTGYASREL---YDVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSL   71 (157)
T ss_pred             HHHHHHHhC----C-CCEEEeCCCHhHHHH---HHhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHH
Confidence            345555544    4 788888844 44433   334467888874   8999999999999999986 999999999999


Q ss_pred             cCChHHHHHHHHc-CcccccC
Q 011590          463 GFSAVEVEVWLSC-IIMISSI  482 (482)
Q Consensus       463 ~~~~~eL~T~~r~-~l~i~~~  482 (482)
                      +|+.|||+|++|| ++|+++|
T Consensus        72 ~m~~~el~t~~~~~~~~i~~v   92 (157)
T cd02001          72 LMNPGVLLTAGEFTPLNLILV   92 (157)
T ss_pred             HhcccHHHHHHHhcCCCEEEE
Confidence            9999999999999 5999765

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=99.68  E-value=5.5e-17  Score=147.97  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcC------CCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEE
Q 011590          384 PMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE  457 (482)
Q Consensus       384 ~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~------~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~  457 (482)
                      +++.|++.+    |++++++.|.+...   +.+|+..      .|++|+.   .|+|||++|+|+|+++|.|+++|++|+
T Consensus         4 ~~~~l~~~l----~~d~ivv~d~G~~~---~~~~~~~~~~~~~~~~~~~~---~g~mG~~lpaAiGaala~p~~~Vv~i~   73 (188)
T cd03371           4 AIEIVLSRA----PATAAVVSTTGMTS---RELFELRDRPGGGHAQDFLT---VGSMGHASQIALGIALARPDRKVVCID   73 (188)
T ss_pred             HHHHHHhhc----CCCCEEEECCCcch---HHHHHhhcCCCCCccCceee---cCccccHHHHHHHHHHhCCCCcEEEEe
Confidence            466777777    99999999844321   2333443      3467764   399999999999999999999999999


Q ss_pred             cchhccCChHHHHHHHHcCc-ccccC
Q 011590          458 GDSGFGFSAVEVEVWLSCII-MISSI  482 (482)
Q Consensus       458 GDGsf~~~~~eL~T~~r~~l-~i~~~  482 (482)
                      |||+|+|+.|||+|++||++ |+++|
T Consensus        74 GDG~f~m~~~eL~ta~~~~l~~i~iv   99 (188)
T cd03371          74 GDGAALMHMGGLATIGGLAPANLIHI   99 (188)
T ss_pred             CCcHHHhhccHHHHHHHcCCCCcEEE
Confidence            99999999999999999997 56543

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=99.68  E-value=1.2e-16  Score=143.70  Aligned_cols=94  Identities=27%  Similarity=0.398  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhccCCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590          384 PMRIIRDAILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF  462 (482)
Q Consensus       384 ~~~~l~~~l~~~~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf  462 (482)
                      +++.|++.+    +++++++.|.+ ...+. ..++....+..++.+.++|+||+++|+|+|++++.|+++|++++|||+|
T Consensus         2 ~~~~l~~~~----~~~~~i~~d~g~~~~~~-~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~   76 (168)
T cd00568           2 VLAALRAAL----PEDAIVVNDAGNSAYWA-YRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGF   76 (168)
T ss_pred             HHHHHHHHC----CCCCEEEeCCcHHHHHH-HHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHH
Confidence            466777777    88999988854 44444 4455666778888888899999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCcccccC
Q 011590          463 GFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       463 ~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|+.+||+|++++++|+++|
T Consensus        77 ~~~~~~l~ta~~~~~~~~~i   96 (168)
T cd00568          77 MMTGQELATAVRYGLPVIVV   96 (168)
T ss_pred             hccHHHHHHHHHcCCCcEEE
Confidence            99999999999999999875

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=99.67  E-value=1e-16  Score=145.17  Aligned_cols=88  Identities=16%  Similarity=0.208  Sum_probs=71.4

Q ss_pred             cHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhc-CCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590          383 TPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG  461 (482)
Q Consensus       383 ~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs  461 (482)
                      .+++.|++.+    | +++++.|++....   +++.. ..|++++.   +|+|||++|+|+|+++|+ +++||+++||||
T Consensus         3 ~~~~~l~~~l----~-d~iiv~d~G~~~~---~~~~~~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~   70 (181)
T TIGR03846         3 DAIRAIASYL----E-DELVVSNIGVPSK---ELYAIRDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGS   70 (181)
T ss_pred             HHHHHHHHhC----C-CCEEEecCCHhHH---HHHhhhcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchH
Confidence            3567777777    8 8999988443221   22333 46777774   899999999999999999 999999999999


Q ss_pred             ccCChHHHHHHHHcC-cccccC
Q 011590          462 FGFSAVEVEVWLSCI-IMISSI  482 (482)
Q Consensus       462 f~~~~~eL~T~~r~~-l~i~~~  482 (482)
                      |+|++|||+|++||+ +|+++|
T Consensus        71 f~m~~~el~ta~~~~~~pv~~v   92 (181)
T TIGR03846        71 LLMNLGVLPTIAAESPKNLILV   92 (181)
T ss_pred             HHhhhhHHHHHHHhCCCCeEEE
Confidence            999999999999999 598764

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=99.65  E-value=1.5e-16  Score=144.39  Aligned_cols=88  Identities=26%  Similarity=0.275  Sum_probs=72.9

Q ss_pred             ccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590          382 MTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS  460 (482)
Q Consensus       382 ~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDG  460 (482)
                      ..+++.|++.+    |+++|++.|+ .+..|..       .|.+++.  ++|+|||++|+|+|+++|.|+++||+|+|||
T Consensus        13 ~~~~~~l~~~l----~~~~iv~~D~G~~~~~~~-------~~~~~~~--~~g~mG~gl~~AiGa~la~p~~~Vv~i~GDG   79 (178)
T cd02008          13 RPSFYALRKAF----KKDSIVSGDIGCYTLGAL-------PPLNAID--TCTCMGASIGVAIGMAKASEDKKVVAVIGDS   79 (178)
T ss_pred             hHHHHHHHHHh----cCCeEEecCcCccccccc-------CChhhcc--ccccCccHHHHHhhHHhhCCCCCEEEEecCh
Confidence            44688888888    9999999994 4443331       2333332  5899999999999999999999999999999


Q ss_pred             hccCC-hHHHHHHHHcCcccccC
Q 011590          461 GFGFS-AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       461 sf~~~-~~eL~T~~r~~l~i~~~  482 (482)
                      +|+|+ .+||+|++||++|+++|
T Consensus        80 ~f~~~g~~eL~ta~~~~l~i~vv  102 (178)
T cd02008          80 TFFHSGILGLINAVYNKANITVV  102 (178)
T ss_pred             HHhhccHHHHHHHHHcCCCEEEE
Confidence            99999 69999999999999875

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=99.62  E-value=5.4e-16  Score=142.25  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             HHHHHHHHhcc--CCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh-
Q 011590          385 MRIIRDAILGV--GSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG-  461 (482)
Q Consensus       385 ~~~l~~~l~~~--~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs-  461 (482)
                      ++.+.+.+.++  .|+|.+++.|.+...|..+ +++.        +..+|+|||++|+|+|+++|+|+|+||+|+|||| 
T Consensus        11 ~~~~~~~~~~~~~~~~d~ii~~D~G~~~~~~~-~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~   81 (193)
T cd03375          11 LKALAKALAELGIDPEKVVVVSGIGCSSRLPY-YFNT--------YGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDL   81 (193)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCChhceehh-hccc--------cchhhhhccHHHHHHHHHHhCCCCeEEEEeccchH
Confidence            44455554331  2667888888544444322 2221        2235999999999999999999999999999999 


Q ss_pred             ccCChHHHHHHHHcCcccccC
Q 011590          462 FGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       462 f~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+|+.|||+|++||++||++|
T Consensus        82 f~m~~~eL~ta~~~~lpv~ii  102 (193)
T cd03375          82 AAIGGNHFIHAARRNIDITVI  102 (193)
T ss_pred             hhccHHHHHHHHHhCCCeEEE
Confidence            689999999999999999865

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=99.59  E-value=4.5e-16  Score=146.76  Aligned_cols=96  Identities=15%  Similarity=0.071  Sum_probs=75.7

Q ss_pred             cccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHh----hhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEE
Q 011590          381 FMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV----LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV  456 (482)
Q Consensus       381 ~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~----~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~  456 (482)
                      ...+++.|++.+    |+|.|++.|++....+..++    ++...+.+++.+  .++|||++|+|+|++++.|+++||+|
T Consensus        13 ~~~~~~~l~~~l----p~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~--~gsmG~GlpaAiGa~~a~p~r~VV~i   86 (235)
T cd03376          13 AALALRHVLKAL----GPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFEN--AAAVASGIEAALKALGRGKDITVVAF   86 (235)
T ss_pred             cHHHHHHHHHHh----hcCeEEEeCCCcccccCCcCCCccccccceehhhcC--HHHHHHHHHHHHHHhccCCCCeEEEE
Confidence            345678888888    99999999955443322222    334444555543  47999999999999999999999999


Q ss_pred             Ecchh-ccCChHHHHHHHHcCcccccC
Q 011590          457 EGDSG-FGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       457 ~GDGs-f~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|||+ |+|++|||+|++|+++||++|
T Consensus        87 ~GDG~~~~m~~~eL~ta~~~~~pv~~v  113 (235)
T cd03376          87 AGDGGTADIGFQALSGAAERGHDILYI  113 (235)
T ss_pred             EcCchHHhhHHHHHHHHHHcCCCeEEE
Confidence            99999 589999999999999999875

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=99.59  E-value=2e-15  Score=136.72  Aligned_cols=87  Identities=15%  Similarity=0.181  Sum_probs=69.0

Q ss_pred             cHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhc-CCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590          383 TPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG  461 (482)
Q Consensus       383 ~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs  461 (482)
                      .+++.|++.+    | ++++++|+++...+.   +.. ..+++++   .+|+|||++|+|+|+++|.| ++|++++|||+
T Consensus         3 ~~~~~l~~~~----~-~~~vv~d~G~~~~~~---~~~~~~~~~~~---~~g~mG~~lp~AiGaala~~-~~vv~i~GDG~   70 (179)
T cd03372           3 DAIKTLIADL----K-DELVVSNIGFPSKEL---YAAGDRPLNFY---MLGSMGLASSIGLGLALAQP-RKVIVIDGDGS   70 (179)
T ss_pred             HHHHHHHHhC----C-CCeEEeCCCHhHHHH---HHccCcccccc---cccchhhHHHHHHHHHhcCC-CcEEEEECCcH
Confidence            3567777777    8 999999944432221   222 3456666   28999999999999999998 99999999999


Q ss_pred             ccCChHHHHHHHHcCc-cccc
Q 011590          462 FGFSAVEVEVWLSCII-MISS  481 (482)
Q Consensus       462 f~~~~~eL~T~~r~~l-~i~~  481 (482)
                      |+|+.|||+|++||++ |+++
T Consensus        71 f~m~~~el~ta~~~~~~~l~v   91 (179)
T cd03372          71 LLMNLGALATIAAEKPKNLII   91 (179)
T ss_pred             HHhCHHHHHHHHHcCCCCEEE
Confidence            9999999999999995 5654

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=99.58  E-value=1.2e-15  Score=144.24  Aligned_cols=96  Identities=15%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             ccHHHHHHHHHhccCC--CCcEEEeC-chhHHHHHHHhhhcCCCCeeecCC--CCCcccchHHHHHHHhhh-----CCCC
Q 011590          382 MTPMRIIRDAILGVGS--PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAG--TWGTMGVGLGYCIAAAIA-----CPER  451 (482)
Q Consensus       382 ~~~~~~l~~~l~~~~~--~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~--~~g~mG~~l~~AiGaala-----~p~~  451 (482)
                      .-+++.|.+.+    +  ++.|++.| |.+..|..+ ++....++.++.+.  +.|+|||++|+||||+++     .|++
T Consensus        14 ~~~~~~l~~~l----~~p~d~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~   88 (237)
T cd02018          14 VTAVRVVLAAL----PAPEDTVIANSTGCSSVYAST-APFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKK   88 (237)
T ss_pred             HHHHHHHHHHh----CCCCCEEEEeCCCccceeccc-CcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCC
Confidence            34577788888    7  89999999 555666544 32333445555543  459999999999999999     9999


Q ss_pred             cEEEEEcchhcc-CChHHHHHHHHcCcccccC
Q 011590          452 LVVAVEGDSGFG-FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       452 ~vi~~~GDGsf~-~~~~eL~T~~r~~l~i~~~  482 (482)
                      +||+|+|||+|+ |+.|+|+|++++++||++|
T Consensus        89 ~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~iv  120 (237)
T cd02018          89 DVVVIGGDGATYDIGFGALSHSLFRGEDITVI  120 (237)
T ss_pred             cEEEEeCchHHHhccHHHHHHHHHcCCCeEEE
Confidence            999999999997 8999999999999999875

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=99.52  E-value=1.6e-14  Score=139.51  Aligned_cols=93  Identities=17%  Similarity=0.155  Sum_probs=72.9

Q ss_pred             CcccHHHHHHHHHhccC--CCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCC-CcccchHHHHHHHhhhCCCCcEEEE
Q 011590          380 NFMTPMRIIRDAILGVG--SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAV  456 (482)
Q Consensus       380 ~~~~~~~~l~~~l~~~~--~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~l~~AiGaala~p~~~vi~~  456 (482)
                      ....+++.|++.+..+.  |++.+++++.+.+..+.          .|+.++++ |+||+++|+|+|+++|+|+++||++
T Consensus        24 g~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~----------~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i   93 (286)
T PRK11867         24 GDGSILAALQRALAELGLDPENVAVVSGIGCSGRLP----------GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV   93 (286)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccC----------ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE
Confidence            34457778888885432  67788888844322111          23444455 9999999999999999999999999


Q ss_pred             Ecchh-ccCChHHHHHHHHcCcccccC
Q 011590          457 EGDSG-FGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       457 ~GDGs-f~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|||+ |+|+.|||+|++|+|+||++|
T Consensus        94 ~GDG~~f~mg~~eL~tA~r~nl~i~vI  120 (286)
T PRK11867         94 TGDGDALAIGGNHFIHALRRNIDITYI  120 (286)
T ss_pred             eCccHHHhCCHHHHHHHHHhCCCcEEE
Confidence            99995 999999999999999999875

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=99.48  E-value=7.2e-14  Score=135.52  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=62.5

Q ss_pred             CCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc-cCChHHHHHHHHc
Q 011590          397 SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF-GFSAVEVEVWLSC  475 (482)
Q Consensus       397 ~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf-~~~~~eL~T~~r~  475 (482)
                      |++.+++++.+.+.+..+ ++.        ..+.+|+||+++|+|+|+++|+|+++||+++|||+| +|+.|||+|++|+
T Consensus        44 p~d~vivsdiG~s~~~~~-yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~tA~r~  114 (301)
T PRK05778         44 PDKVVVVSGIGCSSKIPG-YFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFIHAGRR  114 (301)
T ss_pred             CCCEEEEeCCcHhhhhhh-hcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHHHHHHH
Confidence            778888888554443333 222        122348999999999999999999999999999997 5999999999999


Q ss_pred             CcccccC
Q 011590          476 IIMISSI  482 (482)
Q Consensus       476 ~l~i~~~  482 (482)
                      |+||++|
T Consensus       115 nl~i~vI  121 (301)
T PRK05778        115 NIDITVI  121 (301)
T ss_pred             CCCcEEE
Confidence            9999875

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=99.48  E-value=8.9e-14  Score=133.65  Aligned_cols=76  Identities=18%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             CCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCC-CcccchHHHHHHHhhhCCCCcEEEEEcchhcc-CChHHHHHHHH
Q 011590          397 SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAVEGDSGFG-FSAVEVEVWLS  474 (482)
Q Consensus       397 ~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~-~~~~eL~T~~r  474 (482)
                      |++.+++++.+.+.         ..+ .|+...++ +.||+++|+|+|+++|+|+++||+++|||+|+ |+.|||+|++|
T Consensus        27 p~d~iivsdiGc~~---------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~r   96 (287)
T TIGR02177        27 PEQVVVVSGIGCSA---------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGR   96 (287)
T ss_pred             CCCEEEEECCCccc---------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHHH
Confidence            67888888844321         122 45554455 56899999999999999999999999999976 99999999999


Q ss_pred             cCcccccC
Q 011590          475 CIIMISSI  482 (482)
Q Consensus       475 ~~l~i~~~  482 (482)
                      +|+||++|
T Consensus        97 ~nl~I~vI  104 (287)
T TIGR02177        97 RNVDITVI  104 (287)
T ss_pred             hCcCeEEE
Confidence            99999875

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=99.46  E-value=7.8e-14  Score=133.84  Aligned_cols=95  Identities=16%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             CCCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEE
Q 011590          377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV  456 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~  456 (482)
                      ..+.+..+++.|++..  +.+++.+++++.+....+.. +   ..++.+     .++||+++|+|+|+++|+|+++||++
T Consensus        24 ~~i~~~~v~~al~e~~--~~~~d~ivvsdiGc~~~~~~-~---~~~~~~-----~~~~G~alPaAiGaklA~Pdr~VV~i   92 (277)
T PRK09628         24 DGVILKSIIRAIDKLG--WNMDDVCVVSGIGCSGRFSS-Y---VNCNTV-----HTTHGRAVAYATGIKLANPDKHVIVV   92 (277)
T ss_pred             CchHHHHHHHHHHHhc--CCCCCEEEEeCcCHHHHhhc-c---CCCCce-----eeccccHHHHHHHHHHHCCCCeEEEE
Confidence            3455566677776651  11778888888444322111 1   122222     36999999999999999999999999


Q ss_pred             Ecchhcc-CChHHHHHHHHcCcccccC
Q 011590          457 EGDSGFG-FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       457 ~GDGsf~-~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|||+|+ |..+|+.|++|+|+||++|
T Consensus        93 ~GDG~f~~~g~~el~ta~r~nlpi~iI  119 (277)
T PRK09628         93 SGDGDGLAIGGNHTIHGCRRNIDLNFI  119 (277)
T ss_pred             ECchHHHHhhHHHHHHHHHhCcCeEEE
Confidence            9999997 5889999999999999875

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.44  E-value=2.9e-13  Score=129.65  Aligned_cols=90  Identities=14%  Similarity=0.077  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhc--cCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590          384 PMRIIRDAILG--VGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG  461 (482)
Q Consensus       384 ~~~~l~~~l~~--~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs  461 (482)
                      ++..+.+.+..  +.|++.+++.|.+....+.. ++..        ....+.||+++|+|+|+++|+|+++||+++|||+
T Consensus        19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~-~~~~--------~~~~~~mG~alp~AiGaklA~pd~~VVai~GDG~   89 (280)
T PRK11869         19 IRNALMKALSELNLKPRQVVIVSGIGQAAKMPH-YINV--------NGFHTLHGRAIPAATAVKATNPELTVIAEGGDGD   89 (280)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHH-HccC--------CCCCcccccHHHHHHHHHHHCCCCcEEEEECchH
Confidence            34444444433  23778899998443332322 2221        1345779999999999999999999999999999


Q ss_pred             ccCC-hHHHHHHHHcCcccccC
Q 011590          462 FGFS-AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       462 f~~~-~~eL~T~~r~~l~i~~~  482 (482)
                      |+|. .|||+|++|+|+||++|
T Consensus        90 ~~~iG~~eL~tA~r~nl~i~~I  111 (280)
T PRK11869         90 MYAEGGNHLIHAIRRNPDITVL  111 (280)
T ss_pred             HhhCcHHHHHHHHHhCcCcEEE
Confidence            9976 99999999999999875

>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit

Probab=99.42  E-value=7.6e-13  Score=115.89  Aligned_cols=98  Identities=18%  Similarity=0.316  Sum_probs=79.1

Q ss_pred             HHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC------CCCCCCCCCcccchHH-------HHhh
Q 011590          209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG------KGLLPDTHPLAATAAR-------SLAI  275 (482)
Q Consensus       209 ~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~------~g~~~~~hp~~~G~~~-------~~~l  275 (482)
                      ++++++|++||||+|++|+++.+.++.+++.+|+|++|+||++|+.+      ||++  +||.++|..+       .+.+
T Consensus        18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~g~~~~~p~~e~~   95 (162)
T TIGR00315        18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEITQFLADPSWEGF   95 (162)
T ss_pred             HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHHHHhccCchhhhc
Confidence            67889999999999999999998899999999999999999999998      8988  7788887653       3566


Q ss_pred             ---hcCCEEEEecCccCcccccC--CCCCCCCCCcEEEEe
Q 011590          276 ---GQCDVALVVGARLNWLLHFG--EPPKWSKDVKFVLVD  310 (482)
Q Consensus       276 ---~~aDlvl~iG~~~~~~~~~g--~~~~~~~~~~ii~id  310 (482)
                         .++|+||.+|+++... ...  ....|. +.|.|.+|
T Consensus        96 ~g~g~~DlvlfvG~~~y~~-~~~ls~lk~f~-~~~~i~l~  133 (162)
T TIGR00315        96 DGEGNYDLVLFLGIIYYYL-SQMLSSLKHFS-HIVTIAID  133 (162)
T ss_pred             cCCCCcCEEEEeCCcchHH-HHHHHHHHhhc-CcEEEEec
Confidence               7999999999998421 111  123355 66776666

Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.41  E-value=5.3e-13  Score=127.94  Aligned_cols=92  Identities=21%  Similarity=0.251  Sum_probs=71.1

Q ss_pred             ccHHHHHHHHHhccC--CCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcc
Q 011590          382 MTPMRIIRDAILGVG--SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD  459 (482)
Q Consensus       382 ~~~~~~l~~~l~~~~--~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GD  459 (482)
                      ..++..|++.+..+.  |++.+++++.+...+... ++..        ....++||+++|+|+|+++|+|+++||+++||
T Consensus        16 ~~il~al~~al~~l~~~~~~~ivvsdiGc~~~~~~-~~~~--------~~~~~~~G~alp~A~GaklA~Pd~~VV~i~GD   86 (279)
T PRK11866         16 YGILEALRKALAELGIPPENVVVVSGIGCSSNLPE-FLNT--------YGIHGIHGRVLPIATGVKWANPKLTVIGYGGD   86 (279)
T ss_pred             hHHHHHHHHHHHHhcCCCCCEEEEECCchhhhhhh-hccC--------CCcccccccHHHHHHHHHHHCCCCcEEEEECC
Confidence            445667777775442  567788888443334433 2222        12369999999999999999999999999999


Q ss_pred             h-hccCChHHHHHHHHcCcccccC
Q 011590          460 S-GFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       460 G-sf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      | +|+|+.|||.|++|+|+||++|
T Consensus        87 G~~f~ig~~eL~tA~rrn~~i~vI  110 (279)
T PRK11866         87 GDGYGIGLGHLPHAARRNVDITYI  110 (279)
T ss_pred             hHHHHccHHHHHHHHHHCcCcEEE
Confidence            9 7999999999999999999865

>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional

Probab=99.40  E-value=1.5e-12  Score=114.76  Aligned_cols=100  Identities=20%  Similarity=0.287  Sum_probs=80.1

Q ss_pred             HHHHHHHHhCCCCEEEEcCCccc-cccHHHHHHHHHHhCCcEeeCCC------CCCCCCCCCCcccchHHH-------Hh
Q 011590          209 DKAVSLLKEAKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPM------GKGLLPDTHPLAATAARS-------LA  274 (482)
Q Consensus       209 ~~~~~~L~~a~rpvil~G~g~~~-~~~~~~l~~lae~~g~pv~~t~~------~~g~~~~~hp~~~G~~~~-------~~  274 (482)
                      ++++++|++||||+|++|.++.. .++.+.+.+|+|++++||++|++      +||++|+  |+++|..++       +.
T Consensus        25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~e~  102 (171)
T PRK00945         25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNWKG  102 (171)
T ss_pred             HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchhhh
Confidence            57889999999999999999987 77889999999999999999999      8999999  999887543       45


Q ss_pred             h---hcCCEEEEecCccCccccc-CCCCCCCCCCcEEEEeC
Q 011590          275 I---GQCDVALVVGARLNWLLHF-GEPPKWSKDVKFVLVDV  311 (482)
Q Consensus       275 l---~~aDlvl~iG~~~~~~~~~-g~~~~~~~~~~ii~id~  311 (482)
                      +   .++|+||++|+++...+.. .....|.+ .|.|.||.
T Consensus       103 ~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~~  142 (171)
T PRK00945        103 LDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITIDR  142 (171)
T ss_pred             hcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEecC
Confidence            6   7899999999998632111 11234555 67766663

>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]

Probab=98.98  E-value=3.1e-09  Score=88.08  Aligned_cols=162  Identities=11%  Similarity=0.061  Sum_probs=123.9

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      -+++.++++.+.|++.||+.+..+|.+....++.-+++ +.|..|.+..|..+...+.|-+.+.+||+..+..||  ++|
T Consensus         2 ~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lGN   79 (172)
T COG4032           2 YKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LGN   79 (172)
T ss_pred             cccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cch
Confidence            36789999999999999999999999999988887764 568777776677777778899999999999999876  459


Q ss_pred             hHHHHHHhhh-CCCcEEEEeCCCCcccCCCCCCCC-c--CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590           91 GLAGLSNGMI-NTWPIVMISGSCDQKDFGRGDFQE-L--DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC  166 (482)
Q Consensus        91 ~~~ai~~A~~-~~~Pvl~i~g~~~~~~~~~~~~q~-~--d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv  166 (482)
                      .+++|+.-+. -++|+++|.+.+.....+-.+ |- +  -.-.+.+..--..+.+.+|++..+++..|+..|..-. .||
T Consensus        80 siNal~SL~~ty~iPl~ml~ShRG~~~E~i~A-QVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s-~pv  157 (172)
T COG4032          80 SINALASLYVTYKIPLLMLASHRGVLKEGIEA-QVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS-RPV  157 (172)
T ss_pred             HHHHHHHHHHHhccchhhhhhccchhhcCCcc-ccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC-Cce
Confidence            9999988554 799999999987544333221 11 0  1122334444457788899999999999999998643 678


Q ss_pred             EEEcCcchhcc
Q 011590          167 YLDLPTDVLHQ  177 (482)
Q Consensus       167 ~l~iP~dv~~~  177 (482)
                      -+.+...+|++
T Consensus       158 ~vlls~~~We~  168 (172)
T COG4032         158 AVLLSPKYWEA  168 (172)
T ss_pred             EEEechHHhhh
Confidence            88777666543

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated

Probab=98.94  E-value=2.6e-08  Score=100.56  Aligned_cols=159  Identities=17%  Similarity=0.159  Sum_probs=129.2

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG   87 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG   87 (482)
                      .-++|.++++......|++.+++.|+++..++.+.+.+    .+..++..-+|.+|..||.|-+.+..|  ++..|||||
T Consensus         5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~TaTSg~G   82 (376)
T PRK08659          5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK--AMTATSGPG   82 (376)
T ss_pred             EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC--eEeecCCCc
Confidence            35799999999999999999999999999999888753    357899999999999999999999777  778899999


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhhh-hc---cccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA-VK---PFSKFAVKAKDITEVPKCVAQVLERAVSGR  162 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~~-~~---~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~  162 (482)
                      ++=++-++.-|-..++|++++..+++....|.....+ -|+... +.   .+..-.....+++++.+...+||+.|...+
T Consensus        83 l~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~  162 (376)
T PRK08659         83 FSLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYR  162 (376)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999998755444322211 233222 11   333456667888999999999999999876


Q ss_pred             CceEEEEcCcc
Q 011590          163 PGGCYLDLPTD  173 (482)
Q Consensus       163 ~gPv~l~iP~d  173 (482)
                       -||.+....-
T Consensus       163 -~PViv~~D~~  172 (376)
T PRK08659        163 -TPVIVLADEV  172 (376)
T ss_pred             -CCEEEEechH
Confidence             6999988774

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed

Probab=98.92  E-value=3e-08  Score=99.80  Aligned_cols=159  Identities=21%  Similarity=0.168  Sum_probs=128.8

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      -++|.++++......|++.+.+.|+++..++.+.+.+    .|.+++.+-+|.+|..||.|-+.+..|  ++..|||||+
T Consensus         5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G~   82 (375)
T PRK09627          5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK--SMTASSGPGI   82 (375)
T ss_pred             EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC--EEeecCCchH
Confidence            4689999999999999999999999999988887753    478999999999999999999999777  7788999999


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhh-hh---ccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVE-AV---KPFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~-~~---~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      +=+.=++.-|...++|++++..+++....|.....+ -|... ..   ..+.+-.....+++++.+...+||+.|...+ 
T Consensus        83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~-  161 (375)
T PRK09627         83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFM-  161 (375)
T ss_pred             HHHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHc-
Confidence            999999999999999999999998644444322221 12211 11   1334456667788899999999999999766 


Q ss_pred             ceEEEEcCcch
Q 011590          164 GGCYLDLPTDV  174 (482)
Q Consensus       164 gPv~l~iP~dv  174 (482)
                      -||.+....-+
T Consensus       162 ~PViv~~D~~l  172 (375)
T PRK09627        162 TPVFLLLDETV  172 (375)
T ss_pred             CceEEecchHH
Confidence            79999888744

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated

Probab=98.84  E-value=8.8e-08  Score=95.91  Aligned_cols=157  Identities=15%  Similarity=0.141  Sum_probs=128.0

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG   87 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG   87 (482)
                      .-++|.++++......|++.+.+.|+++..++.+.+.+    .+..++..-+|.+|..||.|-+....|  ++..|||||
T Consensus         5 ~~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G   82 (352)
T PRK07119          5 VLMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR--VMTSSSSPG   82 (352)
T ss_pred             eeehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC--EEeecCcch
Confidence            35799999999999999999999999999998887743    467899999999999999999999777  667789999


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhh---c-----cccceeeecCCcCcHHHHHHHHHHHhh
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV---K-----PFSKFAVKAKDITEVPKCVAQVLERAV  159 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~---~-----~~~k~~~~~~~~~~~~~~l~~A~~~a~  159 (482)
                      ++-+.-+|.-|...++|++++..+++....+.   -..||..++   +     ..-.-.....+++++.+....||+.|.
T Consensus        83 l~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g~---t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE  159 (352)
T PRK07119         83 ISLKQEGISYLAGAELPCVIVNIMRGGPGLGN---IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLAD  159 (352)
T ss_pred             HHHHHHHHHHHHHccCCEEEEEeccCCCCCCC---CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999886433332   222443332   2     222345567788999999999999999


Q ss_pred             cCCCceEEEEcCcch
Q 011590          160 SGRPGGCYLDLPTDV  174 (482)
Q Consensus       160 ~~~~gPv~l~iP~dv  174 (482)
                      ..+ -||.+.....+
T Consensus       160 ~~~-~PViv~~D~~l  173 (352)
T PRK07119        160 KYR-NPVMVLGDGVL  173 (352)
T ss_pred             HhC-CCEEEEcchhh
Confidence            866 69999888754

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit

Probab=98.77  E-value=1.1e-07  Score=101.26  Aligned_cols=160  Identities=15%  Similarity=0.117  Sum_probs=129.8

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG   87 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG   87 (482)
                      ..++|.++++......|++.+++.|+++..++.+.|.+    .++.++..-+|.+|..||.|.+.+..|  ++..|||||
T Consensus       194 ~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R--a~taTSg~G  271 (562)
T TIGR03710       194 ILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR--AMTATSGPG  271 (562)
T ss_pred             EEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc--eeecCCCCC
Confidence            46799999999999999999999999999998888753    379999999999999999999998777  677899999


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhc-------cccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK-------PFSKFAVKAKDITEVPKCVAQVLERAVS  160 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~-------~~~k~~~~~~~~~~~~~~l~~A~~~a~~  160 (482)
                      +.=+.-+|..|...++|+|++..+++....|-....  +|..++.       .+..-.....+++++.+...+||+.|..
T Consensus       272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~--eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~  349 (562)
T TIGR03710       272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKT--EQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEK  349 (562)
T ss_pred             hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCc--cHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999975544432222  2222211       1223455667888999999999999998


Q ss_pred             CCCceEEEEcCcchhc
Q 011590          161 GRPGGCYLDLPTDVLH  176 (482)
Q Consensus       161 ~~~gPv~l~iP~dv~~  176 (482)
                      .+ -||.+....-+..
T Consensus       350 ~~-~PViv~~D~~l~~  364 (562)
T TIGR03710       350 YQ-TPVIVLSDQYLAN  364 (562)
T ss_pred             hc-CCEEEEechHHhC
Confidence            65 8999988877643

The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=98.75  E-value=2.3e-07  Score=93.78  Aligned_cols=158  Identities=16%  Similarity=0.098  Sum_probs=124.2

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh------CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ------LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~------~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      .-++|.++++......|++.+++.|+++..++.+.+.+      .+.+++.+-+|.+|..||.|-+.+..|  +...|||
T Consensus         4 ~~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR--a~TaTSg   81 (390)
T PRK08366          4 KVVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR--AFTATSA   81 (390)
T ss_pred             EEeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeCc
Confidence            45799999999999999999999999998888887752      258888999999999999999999877  7778999


Q ss_pred             hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhh-ccccce-eeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV-KPFSKF-AVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~-~~~~k~-~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      ||+.=+.-+|..|-..++|+|+.-.++.-.. +-....  ||..++ .--+.| .....+++++.+...+||+.|..-+ 
T Consensus        82 ~Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~~~~~--~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~-  157 (390)
T PRK08366         82 QGLALMHEMLHWAAGARLPIVMVDVNRAMAP-PWSVWD--DQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVN-  157 (390)
T ss_pred             ccHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CCCCcc--hhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence            9999999999999999999999998775442 222211  232211 112233 3345788899999999999998765 


Q ss_pred             ceEEEEcCcchh
Q 011590          164 GGCYLDLPTDVL  175 (482)
Q Consensus       164 gPv~l~iP~dv~  175 (482)
                      -||.+....-+.
T Consensus       158 ~PViv~~Dg~~~  169 (390)
T PRK08366        158 LPAMVVESAFIL  169 (390)
T ss_pred             CCEEEEecCccc
Confidence            789888765433

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=98.67  E-value=6.1e-07  Score=90.96  Aligned_cols=160  Identities=16%  Similarity=0.081  Sum_probs=124.6

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh------CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ------LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~------~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      .-++|.++++......|++.+++.|+++..++.+.+.+      .+.+++.+-+|.+|..||.|-+.+..|  +...|||
T Consensus         5 ~~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR--a~TaTS~   82 (394)
T PRK08367          5 TVMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR--TFTATAS   82 (394)
T ss_pred             EeccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeecc
Confidence            45799999999999999999999999998888887753      257899999999999999999999777  7778999


Q ss_pred             hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhh--hhccccceeeecCCcCcHHHHHHHHHHHhhcCC-
Q 011590           86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE--AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR-  162 (482)
Q Consensus        86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~--~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~-  162 (482)
                      ||+.=+.-.|..|...++|+++..+++.... ....+.  ||..  ..+..........+++++.+..-.||+.|...+ 
T Consensus        83 ~Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i~~--d~~D~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~  159 (394)
T PRK08367         83 QGLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINIWN--DWQDTISQRDTGWMQFYAENNQEALDLILIAFKVAEDERV  159 (394)
T ss_pred             chHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCcCc--chHHHHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999997775443 212111  2222  223333333344678889999999999998643 


Q ss_pred             CceEEEEcCcchhc
Q 011590          163 PGGCYLDLPTDVLH  176 (482)
Q Consensus       163 ~gPv~l~iP~dv~~  176 (482)
                      .-||.+....-...
T Consensus       160 ~~Pviv~~Dgf~~s  173 (394)
T PRK08367        160 LLPAMVGFDAFILT  173 (394)
T ss_pred             CCCEEEEechhhhc
Confidence            25888887765443

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains

Probab=98.64  E-value=1.7e-07  Score=88.06  Aligned_cols=150  Identities=15%  Similarity=0.038  Sum_probs=108.7

Q ss_pred             HHHhcCCCEEEecCCcChHHHHHHHHh----CCC--cEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 011590           23 SLSLFGATHMFGVVGIPVTSLANRAVQ----LGV--RFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS   96 (482)
Q Consensus        23 ~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i--~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~   96 (482)
                      .....|++.+++.|+++..++++.+.+    .+.  +++..-+|.+|..||.|.+....|  ++..|||||+.=+.-+|.
T Consensus         2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~r--a~t~ts~~Gl~lm~e~l~   79 (230)
T PF01855_consen    2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGAR--AMTATSGPGLNLMAEPLY   79 (230)
T ss_dssp             HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHH
T ss_pred             HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCc--eEEeecCCcccccHhHHH
Confidence            356789999999999988888877642    344  899999999999999999998665  556899999999999999


Q ss_pred             HhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590           97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus        97 ~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      .+-..++|++++..++.....|....++.+-....+....-.....++.++.+....||+.|..-+ -||.+....-+.
T Consensus        80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~-~PViv~~Dg~~~  157 (230)
T PF01855_consen   80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQ-TPVIVLFDGFLC  157 (230)
T ss_dssp             HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHT-SEEEEEEECCCC
T ss_pred             HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHC-CCEEEEechhhh
Confidence            999999999999999876655444445544444555555556667788999999999999999866 899998877665

This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

Probab=98.64  E-value=1.9e-08  Score=96.69  Aligned_cols=52  Identities=19%  Similarity=0.109  Sum_probs=47.0

Q ss_pred             CCCcccchHHHHHHHhhhCC----CCcEEEEEcchhccC--ChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGF--SAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~~--~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|++++.+    +++|++++|||+|++  +.++|+|+.++++|.++
T Consensus       103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li  160 (255)
T cd02012         103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI  160 (255)
T ss_pred             CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEE
Confidence            46999999999999999965    899999999999998  58899999999998544

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

Probab=98.63  E-value=7.9e-07  Score=90.86  Aligned_cols=159  Identities=14%  Similarity=0.028  Sum_probs=125.3

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh---C---CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ---L---GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~---~---~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      .-++|.++++....+.|++.++|.|+++..++.+.+.+   +   +..+|..-+|.+|..||.|-+....|  ++..|||
T Consensus        11 ~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR--a~TaTS~   88 (407)
T PRK09622         11 EVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR--VATATSS   88 (407)
T ss_pred             eecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC--EEeecCc
Confidence            46799999999999999999999999998888888753   2   36789999999999999999998776  7778999


Q ss_pred             hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhh--hccccceeeecCCcCcHHHHHHHHHHHhhcCC-
Q 011590           86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEA--VKPFSKFAVKAKDITEVPKCVAQVLERAVSGR-  162 (482)
Q Consensus        86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~--~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~-  162 (482)
                      ||+.=+.-+|..|...++|++++..++.... .-.  -..||-.+  .+.-........+++++.+....||+.|...+ 
T Consensus        89 ~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~~~--i~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~  165 (407)
T PRK09622         89 QGLALMVEVLYQASGMRLPIVLNLVNRALAA-PLN--VNGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKV  165 (407)
T ss_pred             chHHHHhhHHHHHHHhhCCEEEEEeccccCC-CcC--CCchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999998886432 111  11233222  23333334456788899999999999998752 


Q ss_pred             CceEEEEcCcchh
Q 011590          163 PGGCYLDLPTDVL  175 (482)
Q Consensus       163 ~gPv~l~iP~dv~  175 (482)
                      +-||.+....-+.
T Consensus       166 ~~Pviv~~Dg~~~  178 (407)
T PRK09622        166 RLPVIVNQDGFLC  178 (407)
T ss_pred             CCCEEEEechhhh
Confidence            3899988877653

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=98.58  E-value=3.2e-08  Score=98.74  Aligned_cols=53  Identities=13%  Similarity=-0.018  Sum_probs=47.8

Q ss_pred             CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~  482 (482)
                      ..+.||+++|.|+|++++.    |++.|++++|||+|+|+  .++|.|++++++|++.|
T Consensus       120 ~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~V  178 (341)
T TIGR03181       120 PNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFF  178 (341)
T ss_pred             CCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEE
Confidence            3477999999999998886    89999999999999999  58899999999998865

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=98.54  E-value=5.8e-08  Score=95.20  Aligned_cols=53  Identities=17%  Similarity=0.144  Sum_probs=47.9

Q ss_pred             CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      ..|+||+++|.|+|+++|.    +++.||+++|||+|+|..  ++|+|+.++++|++.|
T Consensus       102 ~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v  160 (293)
T cd02000         102 GNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV  160 (293)
T ss_pred             cccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence            4699999999999999985    789999999999999973  6799999999999864

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=98.37  E-value=2.3e-07  Score=92.41  Aligned_cols=53  Identities=19%  Similarity=0.286  Sum_probs=46.8

Q ss_pred             CCCCcccchHHHHHHHhhhC-----------CCCcEEEEEcchhccCChH---HHHHHHHcCcccccC
Q 011590          429 GTWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFGFSAV---EVEVWLSCIIMISSI  482 (482)
Q Consensus       429 ~~~g~mG~~l~~AiGaala~-----------p~~~vi~~~GDGsf~~~~~---eL~T~~r~~l~i~~~  482 (482)
                      +++|+||+++|.|+|+++|.           |++.|++++|||+|+ ..+   +|.|+.++++|++.|
T Consensus       125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LPvifv  191 (341)
T CHL00149        125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVLWKLPIIFV  191 (341)
T ss_pred             CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhhcCCCEEEE
Confidence            35799999999999999994           789999999999997 545   699999999998864

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=98.32  E-value=3.2e-07  Score=90.62  Aligned_cols=53  Identities=11%  Similarity=0.105  Sum_probs=47.9

Q ss_pred             CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      .+|+||+++|.|+|+++|.    +++.|++++|||+|++..  .+|.++.++++|++.|
T Consensus       108 ~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~v  166 (315)
T TIGR03182       108 GHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFV  166 (315)
T ss_pred             CcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEE
Confidence            5699999999999999997    789999999999998765  6799999999998764

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=98.24  E-value=5e-05  Score=78.90  Aligned_cols=161  Identities=20%  Similarity=0.081  Sum_probs=112.6

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-----CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-----GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP   86 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-----~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp   86 (482)
                      +-+-+-++|++.+-+.||.++-|+||++..+|++.|.+.     ++.+=-..||-.|.-+|.|-+.. |.-+++..- +|
T Consensus        14 ~~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA~~~-G~ral~~mK-hV   91 (640)
T COG4231          14 RLLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGASYA-GVRALVTMK-HV   91 (640)
T ss_pred             HHhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHhhhc-CceeeEEec-cc
Confidence            345688999999999999999999999999999998642     36666789999999999995554 544444433 56


Q ss_pred             hhHhhHHHHHHhhhC--CCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCc
Q 011590           87 GCVHGLAGLSNGMIN--TWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPG  164 (482)
Q Consensus        87 G~~N~~~ai~~A~~~--~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~g  164 (482)
                      |+-=+.-.+.++-..  +=-+|+|+|+-+.....+   .+.|-...++.---+..++.++.++.+.+.+||....... -
T Consensus        92 GlNvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSq---neqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~-~  167 (640)
T COG4231          92 GLNVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQ---NEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSG-L  167 (640)
T ss_pred             ccccchhhhhhhhhcCccccEEEEEccCCCccccc---chhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhC-C
Confidence            643333344443332  335888888765543222   1224444555555677788899999999999999887655 6


Q ss_pred             eEEEEcCcchhccc
Q 011590          165 GCYLDLPTDVLHQT  178 (482)
Q Consensus       165 Pv~l~iP~dv~~~~  178 (482)
                      ||-|..-.++-...
T Consensus       168 pVilr~ttr~~h~~  181 (640)
T COG4231         168 PVILRTTTRVSHSR  181 (640)
T ss_pred             CEEEEEEeeeeccc
Confidence            88877766664433

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]

Probab=98.22  E-value=4.5e-05  Score=76.74  Aligned_cols=162  Identities=16%  Similarity=0.109  Sum_probs=127.4

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG   87 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG   87 (482)
                      ..++|.++++......|++.+.+.|=++..++.+.+.+    .+.+++...+|.+|..|+.|-+.+.-|  +.-.|||||
T Consensus         4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~aGar--~~TaTSg~G   81 (365)
T COG0674           4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYAGAR--AFTATSGQG   81 (365)
T ss_pred             EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhhCcc--eEeecCCcc
Confidence            46789999999999999999999999988888877643    479999999999999999999998666  567799999


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCc-CHhhhhc-cccceeeecCCcCcHHHHHHHHHHHhhcCCCce
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL-DQVEAVK-PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGG  165 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~-d~~~~~~-~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gP  165 (482)
                      ++=+..++.-|...++|+++...+++....+...+++. |...+.. .+......  +.+++.....+||+.|...+ -|
T Consensus        82 l~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~-~P  158 (365)
T COG0674          82 LLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAARDTGFPILVSA--SVQEAFDLTLLAFNIAEKVL-TP  158 (365)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHHHHHHHccCceEEeec--cHHHHHHHHHHHHHHHHHhc-CC
Confidence            99999999999999999999999998776655433321 2222111 12233322  67888888899999999865 78


Q ss_pred             EEEEcCcchhccc
Q 011590          166 CYLDLPTDVLHQT  178 (482)
Q Consensus       166 v~l~iP~dv~~~~  178 (482)
                      |.+....-+..-.
T Consensus       159 vi~~~D~~~~~h~  171 (365)
T COG0674         159 VIVLLDGFLASHE  171 (365)
T ss_pred             EEEeeccchhcCc
Confidence            9888665554333

>PRK05899 transketolase; Reviewed

Probab=98.21  E-value=8.8e-07  Score=95.94  Aligned_cols=52  Identities=19%  Similarity=0.144  Sum_probs=46.9

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCCh-HH-HHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSA-VE-VEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~-~e-L~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|+|+|.+              +++|++++|||+|++.. +| |.|+.+++||.++
T Consensus       116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li  183 (624)
T PRK05899        116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLI  183 (624)
T ss_pred             CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEE
Confidence            47999999999999999976              78999999999999997 55 9999999998544

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=98.19  E-value=8.7e-07  Score=81.38  Aligned_cols=53  Identities=19%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             CCCcccchHHHHHHHhhhCC----CCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~  482 (482)
                      ..|++|.++|.|+|+|+|.+    +++|++++|||+|+  +...+|.++.+++.|++.|
T Consensus        73 ~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~v  131 (195)
T cd02007          73 GTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVI  131 (195)
T ss_pred             CCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEE
Confidence            46999999999999999965    78999999999999  8889999999999998764

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=98.05  E-value=0.00061  Score=77.33  Aligned_cols=162  Identities=13%  Similarity=0.084  Sum_probs=117.0

Q ss_pred             cCCcHHHHHHHHHHh-------cCC---CEEEecCCcChHHHHHHHHh-------CCCcEEecCchHHHHHHHHHHHhH-
Q 011590           12 AQIDGNTLAAKSLSL-------FGA---THMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGYL-   73 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~-------~Gv---~~vFgvpG~~~~~l~~al~~-------~~i~~v~~~~E~~A~~~A~g~ar~-   73 (482)
                      .-++|.|+|++.+-+       .|+   ..+-|+||++..++.+.|.+       .+|.+-...||-.|+-+|.|-.+. 
T Consensus        18 ~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~   97 (1159)
T PRK13030         18 IFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVE   97 (1159)
T ss_pred             EeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccc
Confidence            467999999999999       999   99999999999999998853       348888899999999999998843 


Q ss_pred             -------hCCcEEEEEcCChhhHhhHHHHHHhhhCCC----cEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecC
Q 011590           74 -------TGKPGILLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK  142 (482)
Q Consensus        74 -------tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~----Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~  142 (482)
                             .|..+++ .--|||+-=+.-++..+-+.++    -||+|+|+=+.....+..+   |-.-.++...--...+.
T Consensus        98 ~~~~~~~~Gv~~l~-~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SSq~eq---dSr~~~~~a~iPvl~Ps  173 (1159)
T PRK13030         98 ADPERTVDGVFAMW-YGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMPH---QSDFALIAWHMPVLNPA  173 (1159)
T ss_pred             ccCCccccceEEEE-ecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccCcCHH---HHHHHHHHcCCceeCCC
Confidence                   3333332 3358887666677776555555    7999999865544333221   22223333334556677


Q ss_pred             CcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccc
Q 011590          143 DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT  178 (482)
Q Consensus       143 ~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~  178 (482)
                      ++.++.+....||....... -||-+-.-.++....
T Consensus       174 ~~qE~~d~~~~a~~lSr~~~-~pV~lr~~t~v~h~~  208 (1159)
T PRK13030        174 NVQEYLDFGLYGWALSRYSG-AWVGFKAISETVESG  208 (1159)
T ss_pred             CHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeee
Confidence            88899999999998887654 577777766665443

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=97.92  E-value=1.1e-05  Score=82.61  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             CCCCcccchHHHHHHHhhh-----------CCCCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590          429 GTWGTMGVGLGYCIAAAIA-----------CPERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       429 ~~~g~mG~~l~~AiGaala-----------~p~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~  482 (482)
                      +.++.||+++|.|+|+++|           .+++.|++++|||+++..  ..+|.++.+++|||+.|
T Consensus       191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfV  257 (433)
T PLN02374        191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV  257 (433)
T ss_pred             CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEE
Confidence            4568999999999999999           367899999999999755  23899999999998764

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=97.91  E-value=6.6e-06  Score=88.34  Aligned_cols=53  Identities=21%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             CCCcccchHHHHHHHhhhC-----CCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC-----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~-----p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~  482 (482)
                      ..|++|.++|.|+|+++|.     ++++|++++|||+++  |+.++|+++.+++.|+++|
T Consensus       115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~I  174 (580)
T PRK05444        115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVI  174 (580)
T ss_pred             CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEE
Confidence            4699999999999999985     678999999999995  9999999999999998654

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated

Probab=97.88  E-value=0.0007  Score=76.65  Aligned_cols=162  Identities=15%  Similarity=0.084  Sum_probs=114.6

Q ss_pred             cCCcHHHHHHHHHHh-------cCC---CEEEecCCcChHHHHHHHHh-------CCCcEEecCchHHHHHHHHHHHh--
Q 011590           12 AQIDGNTLAAKSLSL-------FGA---THMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGY--   72 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~-------~Gv---~~vFgvpG~~~~~l~~al~~-------~~i~~v~~~~E~~A~~~A~g~ar--   72 (482)
                      .-++|-|+|++.+-+       .|+   ..|-|+||++..++.+.|.+       .+|.+-...||-.|+-++-|--+  
T Consensus        26 ~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~  105 (1165)
T PRK09193         26 VFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVN  105 (1165)
T ss_pred             eeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccc
Confidence            357999999999988       999   99999999999999988853       34888889999999999865533  


Q ss_pred             ------HhCCcEEEEEcCChhhHhhHHHHHHhhhCCC----cEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecC
Q 011590           73 ------LTGKPGILLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK  142 (482)
Q Consensus        73 ------~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~----Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~  142 (482)
                            ..|..+++. --|||+-=+.-++..+-..++    -||+++|+=+.....+..+|   -.-.++..---...+.
T Consensus       106 ~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SSq~eqd---Sr~~~~~a~iPvl~Ps  181 (1165)
T PRK09193        106 LFPGAKYDGVFGMWY-GKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSSTLPHQ---SEHAFKAAGMPVLFPA  181 (1165)
T ss_pred             cccceeeccceEEEe-cCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccccchhh---hHHHHHHcCCceeCCC
Confidence                  445444433 358887666667765555544    79999998655543333222   2223333333455667


Q ss_pred             CcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccc
Q 011590          143 DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT  178 (482)
Q Consensus       143 ~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~  178 (482)
                      ++.++.+....||....... -||-+-.-.++....
T Consensus       182 ~~qE~~d~~~~g~~lSr~~g-~pV~lr~~t~v~h~~  216 (1165)
T PRK09193        182 NVQEILDYGLHGWAMSRYSG-LWVGMKTVTDVVESS  216 (1165)
T ss_pred             CHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeee
Confidence            88888888889998887654 577777766665443

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=97.75  E-value=0.0031  Score=71.49  Aligned_cols=161  Identities=16%  Similarity=0.089  Sum_probs=111.1

Q ss_pred             CCcHHHHHHHHH-------HhcCCC---EEEecCCcChHHHHHHHHh-------CCCcEEecCchHHHHHHHHHHHhH--
Q 011590           13 QIDGNTLAAKSL-------SLFGAT---HMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGYL--   73 (482)
Q Consensus        13 ~~~~~~~l~~~L-------~~~Gv~---~vFgvpG~~~~~l~~al~~-------~~i~~v~~~~E~~A~~~A~g~ar~--   73 (482)
                      -++|.|+|++.+       .+.|++   .|-|+||++..++.+.|.+       .+|.+-...||-.|+-|.-|--++  
T Consensus        30 ~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e~  109 (1186)
T PRK13029         30 YISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLEL  109 (1186)
T ss_pred             eecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhccc
Confidence            579999999999       999999   9999999999999998843       358888899999998888887653  


Q ss_pred             ------hCCcEEEEEcCChhhHhhHHHHHHhh---h-CCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCC
Q 011590           74 ------TGKPGILLTVSGPGCVHGLAGLSNGM---I-NTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKD  143 (482)
Q Consensus        74 ------tgk~~v~~~t~GpG~~N~~~ai~~A~---~-~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~  143 (482)
                            .|..+++ .--|||+-=+--++..+-   . -+=-||+++|+=+.....+..+|   -.-.++..---...+.+
T Consensus       110 ~~~a~~dGv~~lw-ygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SSq~eqd---Sr~~~~~a~iPvl~Ps~  185 (1186)
T PRK13029        110 DPGAKRDGVFGMW-YGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSSSVAHQ---SDHTFIAWGIPVLYPAS  185 (1186)
T ss_pred             ccceeeccceEEE-ecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccccCHHH---HHHHHHHcCCceeCCCC
Confidence                  2322332 235788655555554333   2 23468889988655443332222   22233333334556677


Q ss_pred             cCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccc
Q 011590          144 ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT  178 (482)
Q Consensus       144 ~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~  178 (482)
                      +.++.+....||....... -||-+-.-.++....
T Consensus       186 ~qE~~d~~~~a~~lSr~~g-~~V~lr~~t~v~~s~  219 (1186)
T PRK13029        186 VQDYLDYGLHGWAMSRYSG-LWVGMKCVTEVVEST  219 (1186)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCEEEEEeeeeeecc
Confidence            8888888889998887654 578877777776554

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=97.74  E-value=2.5e-05  Score=84.53  Aligned_cols=53  Identities=25%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             CCCcccchHHHHHHHhhhCCCCcEEEEEcchhc--cCChHHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF--GFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf--~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++|+||+++|+|+|++++.++++|++++|||+|  .+...+++++.++++|+++|
T Consensus       121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I  175 (641)
T PRK12571        121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVI  175 (641)
T ss_pred             CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEE
Confidence            467899999999999999999999999999999  66779999999999998764

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=97.71  E-value=0.00076  Score=77.60  Aligned_cols=152  Identities=16%  Similarity=0.098  Sum_probs=110.5

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHH---HhC---C-----CcEEecCchHHHHHHHHHHHhHhCCcEEEE
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRA---VQL---G-----VRFIAFHNEQSAGYAASAYGYLTGKPGILL   81 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al---~~~---~-----i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~   81 (482)
                      .|+|.++++..... |.+.+|+.|=++..++.+.+   ...   +     .+++...+|.+|+.|+.|.+.. |.. +..
T Consensus         3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~a-Gar-a~T   79 (1165)
T TIGR02176         3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQT-GAL-TTT   79 (1165)
T ss_pred             eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhhc-CCC-EEE
Confidence            58999999998877 99999999976665555554   321   1     2799999999999999997765 543 446


Q ss_pred             EcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC---CCCCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHH
Q 011590           82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG---RGDFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLER  157 (482)
Q Consensus        82 ~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~---~~~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~  157 (482)
                      .|||+|++-+...|+.+...++|+|+...++.....+   .++++++.   ..|. +.|.. ...++.++.+..-.|++.
T Consensus        80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~---~~R~-~G~ivl~s~svQEa~D~al~A~~l  155 (1165)
T TIGR02176        80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFGDHQDVM---AARQ-TGFAMLASSSVQEVMDLALVAHLA  155 (1165)
T ss_pred             ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCCCchHHH---Hhhc-CCeEEEeCCCHHHHHHHHHHHHHH
Confidence            7999999999999988777799999999998555332   22233321   2233 33433 335677888888899999


Q ss_pred             hhcCCCceEEEEcCc
Q 011590          158 AVSGRPGGCYLDLPT  172 (482)
Q Consensus       158 a~~~~~gPv~l~iP~  172 (482)
                      |...+ -||.+...-
T Consensus       156 Ae~~~-~Pvi~~~Dg  169 (1165)
T TIGR02176       156 TIEAR-VPFMHFFDG  169 (1165)
T ss_pred             HHhcC-CCEEEEecC
Confidence            98765 688776654

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]

Probab=97.63  E-value=0.00019  Score=61.16  Aligned_cols=81  Identities=22%  Similarity=0.296  Sum_probs=57.4

Q ss_pred             HHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC--Ccccch-HHHHhh----------
Q 011590          209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH--PLAATA-ARSLAI----------  275 (482)
Q Consensus       209 ~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h--p~~~G~-~~~~~l----------  275 (482)
                      +-++.+|++||||++++|..+...+-.|.+.+|+|+.++|+++|..+.+.+-+..  .-|.+. ....++          
T Consensus        26 ~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg  105 (170)
T COG1880          26 EVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDG  105 (170)
T ss_pred             HHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCC
Confidence            3456899999999999999998667778899999999999999987654333221  001111 111122          


Q ss_pred             -hcCCEEEEecCccC
Q 011590          276 -GQCDVALVVGARLN  289 (482)
Q Consensus       276 -~~aDlvl~iG~~~~  289 (482)
                       .+.|+||++|+...
T Consensus       106 ~g~yDlviflG~~~y  120 (170)
T COG1880         106 NGNYDLVIFLGSIYY  120 (170)
T ss_pred             CCCcceEEEEeccHH
Confidence             35899999998764

>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []

Probab=97.11  E-value=0.0008  Score=59.44  Aligned_cols=103  Identities=21%  Similarity=0.329  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC-CCCCCCCCCCCcccchH--HHHh---------
Q 011590          207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP-MGKGLLPDTHPLAATAA--RSLA---------  274 (482)
Q Consensus       207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~-~~~g~~~~~hp~~~G~~--~~~~---------  274 (482)
                      ..+.++++|++||||++++|..+......+.........++|++.|. ..+++ ++..|-| +..  .+++         
T Consensus        23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~-~d~~~ky-~~~~~~~~l~~p~w~g~~  100 (167)
T PF02552_consen   23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM-PDYRPKY-PKIEPENELNDPHWNGTD  100 (167)
T ss_dssp             HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH-CSSGCCE--HHHHHHHCCSTT--TTT
T ss_pred             hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc-ccccccc-ccccHHHhcCCCCCCccc
Confidence            44789999999999999999999765545667777778999999887 56664 3333433 321  1211         


Q ss_pred             -hhcCCEEEEecCccCccccc-CCCCCCCCCCcEEEEeC
Q 011590          275 -IGQCDVALVVGARLNWLLHF-GEPPKWSKDVKFVLVDV  311 (482)
Q Consensus       275 -l~~aDlvl~iG~~~~~~~~~-g~~~~~~~~~~ii~id~  311 (482)
                       =.+.|++|++|...-..+.. .-...|.+..+++.++.
T Consensus       101 g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~  139 (167)
T PF02552_consen  101 GHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDR  139 (167)
T ss_dssp             SS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SS
T ss_pred             cCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEecc
Confidence             13799999999765321100 00122445567766665

The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.

>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional

Probab=96.87  E-value=0.0019  Score=63.26  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             CEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--C-CCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCC
Q 011590          221 PLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--K-GLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP  297 (482)
Q Consensus       221 pvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~-g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~  297 (482)
                      .|+-.|.|....+..+.+++||+.+|..|-+|...  . |-+|  |...+|..+...  ..||-|++|.+=..+...|  
T Consensus       197 vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p--~~~QIGqTGk~V--~P~lYiA~GISGaiQH~~G--  270 (313)
T PRK03363        197 LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWME--HERYVGISNLML--KPELYLAVGISGQIQHMVG--  270 (313)
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCC--HHheecCCCCCc--CccEEEEEccccHHHHHhh--
Confidence            34444556555577888999999999999988653  2 3555  345566543211  4699999998765444333  


Q ss_pred             CCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          298 PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       298 ~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                        ......||-||.||+..=+...|..+++|+.++|++|.+.++
T Consensus       271 --m~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~  312 (313)
T PRK03363        271 --ANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA  312 (313)
T ss_pred             --cccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence              344567999999998776666799999999999999999874

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

Probab=96.87  E-value=0.04  Score=48.63  Aligned_cols=149  Identities=13%  Similarity=0.101  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHH-hCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~-~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      .++.|.+.+++.. +.++.............+. +..-+++ ..-.|++.+.+|.|.+.. |+..++... ..=...+..
T Consensus         3 ~~~~l~~~~~~~~-~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~f~~ra~d   79 (156)
T cd07033           3 FGEALLELAKKDP-RIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALH-GLKPFVSTF-SFFLQRAYD   79 (156)
T ss_pred             HHHHHHHHHhhCC-CEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHC-CCeEEEEEC-HHHHHHHHH
Confidence            3456666655543 3333333311112222232 2233555 357899999999999976 444444433 445666677


Q ss_pred             HHH-HhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           94 GLS-NGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        94 ai~-~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      .|. .+-..+.||+++........ ..-..||..++..+++.+-.... .+.+++++..+++.|++    . ++|+|+.+
T Consensus        80 qi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~----~-~~P~~irl  154 (156)
T cd07033          80 QIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE----Y-DGPVYIRL  154 (156)
T ss_pred             HHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh----C-CCCEEEEe
Confidence            777 67788999999988554433 22335778888999999876554 45566777777766664    2 37999988


Q ss_pred             Cc
Q 011590          171 PT  172 (482)
Q Consensus       171 P~  172 (482)
                      |.
T Consensus       155 ~~  156 (156)
T cd07033         155 PR  156 (156)
T ss_pred             eC
Confidence            73

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included

>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional

Probab=96.82  E-value=0.0026  Score=62.35  Aligned_cols=112  Identities=17%  Similarity=0.112  Sum_probs=80.5

Q ss_pred             EEEE-cCCccccccHHHHHHHHHHhCCcEeeCCCC---CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCC
Q 011590          222 LIVF-GKGAAYARAEGELKKLVESTGIPFLPTPMG---KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP  297 (482)
Q Consensus       222 vil~-G~g~~~~~~~~~l~~lae~~g~pv~~t~~~---~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~  297 (482)
                      +|+. |.|....+..+.+++||+.+|.-|-+|...   .|-+|.+  ..+|..+..  =..||-|++|.+=..+...|  
T Consensus       196 vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~--~QIGqTGk~--V~P~lYiA~GISGAiQH~aG--  269 (312)
T PRK11916        196 RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE--RYIGVSGVL--LKSDLYLTLGISGQIQHMVG--  269 (312)
T ss_pred             EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChh--cEECCCCCC--cCccEEEEeccccHHHHHhh--
Confidence            4444 555554467889999999999999988652   2456553  456643321  14699999998765443333  


Q ss_pred             CCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          298 PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       298 ~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                        ......||-||.|++..=+...|..+++|+.++|++|.+.++
T Consensus       270 --m~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~  311 (312)
T PRK11916        270 --GNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS  311 (312)
T ss_pred             --cccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence              344567999999998776666799999999999999998874

>PLN00022 electron transfer flavoprotein subunit alpha; Provisional

Probab=96.79  E-value=0.0027  Score=63.29  Aligned_cols=113  Identities=18%  Similarity=0.220  Sum_probs=80.9

Q ss_pred             EEEE-cCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590          222 LIVF-GKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP  298 (482)
Q Consensus       222 vil~-G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~  298 (482)
                      +|+. |.|....+..+.+++||+.+|.-|-+|...  .|-+|.  ...+|..+  ..=..||-|++|.+=..+...|   
T Consensus       239 vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~--~~QIGqTG--k~V~P~lYIA~GISGAiQH~~G---  311 (356)
T PLN00022        239 VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPN--DLQVGQTG--KIVAPELYIAVGISGAIQHLAG---  311 (356)
T ss_pred             EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCCh--HheeccCC--CCcCCcEEEEEecchHHHHHhh---
Confidence            4555 455554467889999999999999887542  355544  34455433  1125799999998755443333   


Q ss_pred             CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                       ......||-||.|++..=+...|..|++|+.++|++|.+.+++
T Consensus       312 -m~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk~  354 (356)
T PLN00022        312 -MKDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLPE  354 (356)
T ss_pred             -cccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHHh
Confidence             3445679999999987656667999999999999999999864

>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]

Probab=96.68  E-value=0.0044  Score=60.33  Aligned_cols=113  Identities=14%  Similarity=0.171  Sum_probs=81.3

Q ss_pred             EEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCC
Q 011590          222 LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPK  299 (482)
Q Consensus       222 vil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~  299 (482)
                      ++-.|.|....+..+.+.+||+.+|+-|-+|...  .|-+|++  +++|..+.  .=..||-|++|.+---+...|    
T Consensus       198 VVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d--~QVGqTGk--~V~P~LYIA~GISGAiQHlaG----  269 (313)
T COG2025         198 VVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPND--RQVGQTGK--TVAPKLYIALGISGAIQHLAG----  269 (313)
T ss_pred             EEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCcc--ceecCCCc--EecccEEEEEecccHHHHHhh----
Confidence            4444555554466777899999999999988653  4666655  45664331  225799999998765443333    


Q ss_pred             CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          300 WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       300 ~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ......||-||.|+...=+...|..+++|+..++++|.+.+++
T Consensus       270 m~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~~  312 (313)
T COG2025         270 MKDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALKK  312 (313)
T ss_pred             cccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHhc
Confidence            2344678889999877766667999999999999999999864

>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]

Probab=96.60  E-value=0.02  Score=55.75  Aligned_cols=127  Identities=17%  Similarity=0.196  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHH-------------
Q 011590          205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAAR-------------  271 (482)
Q Consensus       205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~-------------  271 (482)
                      +++++++++.|.+||||+++-++... -++.+.-.+|+|.+|+ ++.+         .-..+.|...             
T Consensus        66 deAie~Aa~ILv~aKrPllyg~s~ts-cEA~~~gielaE~~ga-viD~---------~asvchGp~~~alqe~g~p~~Tl  134 (429)
T COG1029          66 DEAIEKAAEILVNAKRPLLYGWSSTS-CEAQELGIELAEKLGA-VIDS---------NASVCHGPSVLALQEAGKPTATL  134 (429)
T ss_pred             HHHHHHHHHHHHhccCceEeccccch-HHHHHHHHHHHHHhCc-EecC---------CCccccchHHHHHHhcCCcccch
Confidence            46899999999999999999887763 3777888999999998 3333         3333444321             


Q ss_pred             HHhhhcCCEEEEecCccCcc--------ccc--CCCCCC-CCCCcEEEEeCCchhhc---ccCCceeEeccHHHHHHHHH
Q 011590          272 SLAIGQCDVALVVGARLNWL--------LHF--GEPPKW-SKDVKFVLVDVCKEEIE---LRKPHLGLVGDAKKVLEMIN  337 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~--------~~~--g~~~~~-~~~~~ii~id~d~~~~~---~~~~~~~i~~D~~~~l~~L~  337 (482)
                      .+.=+.||+|+--|+++-..        ..+  |++..- ..+.++|.||+-.....   .++..+..-+| .+++.+|.
T Consensus       135 gevKNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sD-yelisAl~  213 (429)
T COG1029         135 GEVKNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSD-YELISALR  213 (429)
T ss_pred             hhhcccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCc-HHHHHHHH
Confidence            13345799999999887431        111  111110 24567888888654432   22223333345 45677777


Q ss_pred             HhhhcC
Q 011590          338 KEIKDE  343 (482)
Q Consensus       338 ~~l~~~  343 (482)
                      ..+...
T Consensus       214 ~~l~G~  219 (429)
T COG1029         214 AALHGK  219 (429)
T ss_pred             HHhcCC
Confidence            776544

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=96.48  E-value=0.004  Score=60.54  Aligned_cols=90  Identities=16%  Similarity=0.040  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhC-----CCCcEEEEE
Q 011590          384 PMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIAC-----PERLVVAVE  457 (482)
Q Consensus       384 ~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~-----p~~~vi~~~  457 (482)
                      .++.+.+.+    .+++|++.+ |..+...+  .++.+   .+-.+.....+|.+.+.|.|+++|.     ++..|+++.
T Consensus        29 ~~~~l~~~l----g~~~v~~~~iGC~~~~~g--~~p~~---~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~   99 (300)
T PRK11864         29 GLRYLLKAL----GEKTVLVIPASCSTVIQG--DTPKS---PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWA   99 (300)
T ss_pred             HHHHHHHHh----CCCeEEEeCCCccceecC--CCCcc---cccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEE
Confidence            356677777    778888887 44332211  11222   1222334588999999999999985     456788899


Q ss_pred             cchhc-cCChHHHHHHHHcCcccccC
Q 011590          458 GDSGF-GFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       458 GDGsf-~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |||++ .-..+.|.-++..++||+.|
T Consensus       100 GDG~~~~~g~~~l~~A~~~~~~v~~v  125 (300)
T PRK11864        100 GDGGTADIGFQALSGAAERNHDILYI  125 (300)
T ss_pred             ccCccccccHHHHHHHHHhCcCEEEE
Confidence            99997 66678899999999999764

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=96.40  E-value=0.0062  Score=59.26  Aligned_cols=94  Identities=15%  Similarity=0.044  Sum_probs=64.8

Q ss_pred             CcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhh----CCCCcEE
Q 011590          380 NFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIA----CPERLVV  454 (482)
Q Consensus       380 ~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala----~p~~~vi  454 (482)
                      ...-+++.|.+.+    .++.|++.+ |..+.+.+  .++.+ |..  .+...+.||-+.+.|.|.+.|    .++++||
T Consensus        25 g~~~~~~~l~~a~----g~~~vi~~~iGC~s~~~~--~~p~~-~~~--~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv   95 (299)
T PRK11865         25 GAAIAMRLALKAL----GKNTVIVVATGCLEVITT--PYPET-AWN--VPWIHVAFENAAAVASGIERAVKALGKKVNVV   95 (299)
T ss_pred             CcHHHHHHHHHHc----CCCEEEEeCCCcccccCc--cCcCC-ccc--cccchhhhcchHHHHHHHHHHHHHhcCCCeEE
Confidence            3444577777777    778888887 54444321  12322 222  133457788899999888777    4567999


Q ss_pred             EEEcchhc-cCChHHHHHHHHcCcccccC
Q 011590          455 AVEGDSGF-GFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       455 ~~~GDGsf-~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++.|||++ --..+.|.-+++.+.+|+.|
T Consensus        96 ~~~GDG~~~dIG~~~L~~a~~r~~ni~~i  124 (299)
T PRK11865         96 AIGGDGGTADIGFQSLSGAMERGHNILYL  124 (299)
T ss_pred             EEeCCchHhhccHHHHHHHHHcCCCeEEE
Confidence            99999977 55578999999999888754

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=96.26  E-value=0.015  Score=53.43  Aligned_cols=109  Identities=7%  Similarity=0.084  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC----CCCCCcCHh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDFQELDQV  128 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~----~~~q~~d~~  128 (482)
                      +.-+|.|.+.+. +|+.+|++--| |+.-.+..|.+|...++|+++|.-+-....         .+.    ..+...|..
T Consensus        58 ~lpaaiGa~la~p~r~vv~i~GDG-~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~  136 (196)
T cd02013          58 ALPAIIGAKAAAPDRPVVAIAGDG-AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFA  136 (196)
T ss_pred             HHHHHHHHHHhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHH
Confidence            444677777654 57788777665 355557899999999999999994432210         010    022346777


Q ss_pred             hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.+.-...++++++++.+.+++|+..+..  .||+.|++..|-
T Consensus       137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~--~~p~liev~v~~  180 (196)
T cd02013         137 KIAEACGAKGITVDKPEDVGPALQKAIAMMAE--GKTTVIEIVCDQ  180 (196)
T ss_pred             HHHHHCCCEEEEECCHHHHHHHHHHHHhcCCC--CCeEEEEEEeCc
Confidence            78888877888999988888888877754323  489999998864

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>smart00861 Transket_pyr Transketolase, pyrimidine binding domain

Probab=96.14  E-value=0.074  Score=47.47  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=75.8

Q ss_pred             EE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCC-CcEEEEeCCCCcccCCCC-CCCCcCHhhh
Q 011590           54 FI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINT-WPIVMISGSCDQKDFGRG-DFQELDQVEA  130 (482)
Q Consensus        54 ~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~-~Pvl~i~g~~~~~~~~~~-~~q~~d~~~~  130 (482)
                      ++ ....|++.+.+|.|++....+|-+.  +..+-+..+...+..+-..+ +|+++....... .-+.+ .||..++..+
T Consensus        51 ~~~~gIaE~~~vg~a~GlA~~G~~pi~~--~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~-~g~~G~tH~~~~~~~~  127 (168)
T smart00861       51 VIDTGIAEQAMVGFAAGLALAGLRPVVA--IFFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGG-VGEDGPTHHSQEDEAL  127 (168)
T ss_pred             EEEcCcCHHHHHHHHHHHHHcCCCcEEE--eeHHHHHHHHHHHHHhCcccCCCEEEEecCccc-cCCCCccccchhHHHH
Confidence            65 3578999999999999986654443  44555556666776655554 777666532111 11224 3888999999


Q ss_pred             hcccccee-eecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590          131 VKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       131 ~~~~~k~~-~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      ++.+.+.. ..+.+++++..+++.+++    ...+|+||.++.
T Consensus       128 ~~~iP~~~v~~P~~~~e~~~~l~~a~~----~~~~p~~i~~~~  166 (168)
T smart00861      128 LRAIPGLKVVAPSDPAEAKGLLRAAIR----RDDGPPVIRLER  166 (168)
T ss_pred             HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCCEEEEecC
Confidence            99987654 456677888888877772    234899999874

Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.

>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]

Probab=96.06  E-value=0.011  Score=54.86  Aligned_cols=122  Identities=18%  Similarity=0.234  Sum_probs=85.8

Q ss_pred             HHHHhCCCC------EEEEcCCcccc-ccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEE
Q 011590          213 SLLKEAKKP------LIVFGKGAAYA-RAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALV  283 (482)
Q Consensus       213 ~~L~~a~rp------vil~G~g~~~~-~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~  283 (482)
                      +.|..++||      +++.|+...-+ +..+.|..||+++|+.|-.|..+  .|.+|++  +.+|.-+.  +=-..|-|+
T Consensus       205 ~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvpNd--lQiGQTGK--IVAPeLYiA  280 (336)
T KOG3954|consen  205 QELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVPND--LQIGQTGK--IVAPELYIA  280 (336)
T ss_pred             hhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCCCc--cccccccc--eeccceEEE
Confidence            455566666      56777655444 67788999999999999887765  3555553  55564321  223578888


Q ss_pred             ecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          284 VGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       284 iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      +|.+---+...|    ......|+-|+-||+..-+...|..+++|+-.++.+|++.|.+
T Consensus       281 vGisGAIQHLAG----mKDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~k  335 (336)
T KOG3954|consen  281 VGISGAIQHLAG----MKDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLPK  335 (336)
T ss_pred             EeccHHHHHhhc----CccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhccC
Confidence            987654333333    3444568889999987766677999999999999999998864

>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=96.05  E-value=0.0053  Score=58.10  Aligned_cols=78  Identities=17%  Similarity=0.176  Sum_probs=50.6

Q ss_pred             CCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc-cCCceeEeccHHHHHHHH
Q 011590          259 LPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL-RKPHLGLVGDAKKVLEMI  336 (482)
Q Consensus       259 ~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~-~~~~~~i~~D~~~~l~~L  336 (482)
                      |.|.+|.-.-......+++||++|+||+++..+.....+.....++++|.||.++..... ...|+.+.+|+.++|++|
T Consensus       157 FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~  235 (235)
T cd01408         157 FGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL  235 (235)
T ss_pred             CCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence            444444322223345678899999999998754322211122356788889998865532 335899999999999875

Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2

Probab=95.88  E-value=0.084  Score=47.66  Aligned_cols=120  Identities=15%  Similarity=0.170  Sum_probs=75.8

Q ss_pred             CcEEe-cCchHHHHHHHHHHHhHhC-CcEEEEEcCChhhH----hhHHHHH-HhhhCCCcEEEEeCCCCcccCCCCCCCC
Q 011590           52 VRFIA-FHNEQSAGYAASAYGYLTG-KPGILLTVSGPGCV----HGLAGLS-NGMINTWPIVMISGSCDQKDFGRGDFQE  124 (482)
Q Consensus        52 i~~v~-~~~E~~A~~~A~g~ar~tg-k~~v~~~t~GpG~~----N~~~ai~-~A~~~~~Pvl~i~g~~~~~~~~~~~~q~  124 (482)
                      -+++. .-.|++.+.+|.|++...+ ++.++... ++=+.    =+...+. .....+.|+.+++...-.....-+.||.
T Consensus        48 ~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f-~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s  126 (178)
T PF02779_consen   48 GRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF-ADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHS  126 (178)
T ss_dssp             TTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE-GGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSS
T ss_pred             ceEEecCcchhhccceeeeeeecccccceeEeec-cccccccchhhhhhhhhhhhcccceecceeecCcccccccccccc
Confidence            36664 4789999999999998864 66666544 33222    1334555 4666777877444433222333356788


Q ss_pred             cCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590          125 LDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus       125 ~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      .+...+++.+-++.... .++.++..+++.|++.   ..++|+||..|....
T Consensus       127 ~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~~r~~~  175 (178)
T PF02779_consen  127 IEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIREPRGLY  175 (178)
T ss_dssp             SSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEEESSEE
T ss_pred             cccccccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEeeHHhC
Confidence            89999999998876654 4556665555555532   234999999998754

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=95.74  E-value=0.042  Score=49.48  Aligned_cols=105  Identities=21%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-C---C----C----CC---CCcCH
Q 011590           63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G---R----G----DF---QELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~---~----~----~~---q~~d~  127 (482)
                      +--+|.|.+.+..|+.++++--| ++.-.+..|.+|...++|++++.-+-..... .   .    .    .+   ...|.
T Consensus        56 ~l~~aiGa~la~~~~Vv~i~GDG-sf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~  134 (175)
T cd02009          56 TLSTALGIALATDKPTVLLTGDL-SFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDF  134 (175)
T ss_pred             HHHHHHHHHhcCCCCEEEEEehH-HHHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCH
Confidence            44567777776678888776544 3444478999999999999998876542110 0   0    0    01   13466


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ..+.+.+--...++++++++.+.+++|+    .. .+|+.|++..|
T Consensus       135 ~~lA~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~lIev~v~  175 (175)
T cd02009         135 EHLAKAYGLEYRRVSSLDELEQALESAL----AQ-DGPHVIEVKTD  175 (175)
T ss_pred             HHHHHHcCCCeeeCCCHHHHHHHHHHHH----hC-CCCEEEEEeCC
Confidence            6677776656678888777766666665    33 48999998764

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B

Probab=95.73  E-value=0.036  Score=52.40  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             CCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCC-----C-------------eeecCCCCCcccchHHH
Q 011590          379 FNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEP-----R-------------CRLDAGTWGTMGVGLGY  440 (482)
Q Consensus       379 ~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~g~mG~~l~~  440 (482)
                      +....+.-.|+.+++.  |.|.|+.+.| +..++-. +|..+..     |             +-+...+.|--|.++++
T Consensus        44 LGvVELTiALH~vFd~--p~DkivwDvG-HQ~Y~HK-iLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSa  119 (270)
T PF13292_consen   44 LGVVELTIALHYVFDS--PKDKIVWDVG-HQAYVHK-ILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISA  119 (270)
T ss_dssp             HCCHHHHHHHHHHS-T--TTSEEEESSS-TT-HHHH-HCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHH
T ss_pred             ccHHHHHHHHHHHhCC--CCCeEEEecc-cccchhh-hccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHH
Confidence            3444555567777743  6666666554 4444322 2222110     0             11112234667889999


Q ss_pred             HHHHhhhC----CCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590          441 CIAAAIAC----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       441 AiGaala~----p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+|.+.|+    +++.||+++|||++-  |..-.|-.+...+-++++|
T Consensus       120 a~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVI  167 (270)
T PF13292_consen  120 ALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVI  167 (270)
T ss_dssp             HHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEE
T ss_pred             HHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEE
Confidence            99988885    578999999999985  3444566666677666654

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O

Probab=95.73  E-value=0.01  Score=55.26  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             CCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590          430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF  462 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf  462 (482)
                      ..|++|++++.|+|+++.+++..|++++|||.+
T Consensus        60 ~~G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~   92 (227)
T cd02011          60 EGGELGYSLSHAYGAVFDNPDLIVACVVGDGEA   92 (227)
T ss_pred             cccchhhHHHHHHHhhhcCCCcEEEEEECcCHH
Confidence            359999999999999999999999999999994

This enzyme requires divalent magnesium ions and TPP for activity.

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=95.72  E-value=0.044  Score=48.08  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCC-----C---CCCC
Q 011590           62 SAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGR-----G---DFQE  124 (482)
Q Consensus        62 ~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~-----~---~~q~  124 (482)
                      .+.-+|.|.+.+. +|+.++++--| ++...+..|.+|...++|+++|.-+-....        .+.     .   .+..
T Consensus        32 ~~~~~aiGa~~a~p~~~vv~i~GDG-~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (153)
T PF02775_consen   32 YALPAAIGAALARPDRPVVAITGDG-SFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPN  110 (153)
T ss_dssp             THHHHHHHHHHHSTTSEEEEEEEHH-HHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTT
T ss_pred             CHHHhhhHHHhhcCcceeEEecCCc-ceeeccchhHHHhhccceEEEEEEeCCcceEeccccccCcCccccccccccccc
Confidence            4556678888874 67888777655 455558999999999999999998664321        111     0   1455


Q ss_pred             cCHhhhhccccceeeecCCc--CcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590          125 LDQVEAVKPFSKFAVKAKDI--TEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus       125 ~d~~~~~~~~~k~~~~~~~~--~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      .|...+.+.+--...+++++  +++.+.+++|+    . ..||+.|+|
T Consensus       111 ~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~-~~gp~vIeV  153 (153)
T PF02775_consen  111 PDFAALAEAFGIKGARVTTPDPEELEEALREAL----E-SGGPAVIEV  153 (153)
T ss_dssp             CGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----H-SSSEEEEEE
T ss_pred             CCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----h-CCCcEEEEc
Confidence            68888888886667788777  66655555555    4 349999986

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=95.70  E-value=0.051  Score=48.72  Aligned_cols=105  Identities=16%  Similarity=0.081  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-C--------CC-----CCCCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G--------RG-----DFQELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~--------~~-----~~q~~d~  127 (482)
                      +.-+|.|.+.+. .|+.+|++--| ++.-....+..|...++|+++|.-+-..... .        ..     .+...|.
T Consensus        53 ~lp~AiGa~la~~~~~vv~i~GDG-~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  131 (172)
T cd02004          53 GLGYAIAAALARPDKRVVLVEGDG-AFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRY  131 (172)
T ss_pred             hHHHHHHHHHhCCCCeEEEEEcch-hhcCCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCH
Confidence            445667777765 46777776555 3444478899999999998888865432110 0        00     1233566


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ..+++.+.-...++++++++    ++|++.+... +||+.|++..|
T Consensus       132 ~~la~a~G~~~~~v~~~~el----~~al~~a~~~-~~p~liev~i~  172 (172)
T cd02004         132 DLVAEAFGGKGELVTTPEEL----KPALKRALAS-GKPALINVIID  172 (172)
T ss_pred             HHHHHHCCCeEEEECCHHHH----HHHHHHHHHc-CCCEEEEEEcC
Confidence            67777776667788776665    4555555444 49999998754

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=95.66  E-value=0.11  Score=47.89  Aligned_cols=110  Identities=11%  Similarity=0.023  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC----CCC------
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDF------  122 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~----~~~------  122 (482)
                      +.-+|.|.+.+. +|+.+|++--| ++.=.+..|..|...++|+++|.-+-.....         +.    ..+      
T Consensus        62 ~lpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~  140 (202)
T cd02006          62 TVPAALGVAAADPDRQVVALSGDY-DFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSS  140 (202)
T ss_pred             hhHHHHhHHhhCCCCeEEEEEeCh-HhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcccccccccccccc
Confidence            334566666654 46777777555 3444457899999999999999876542210         00    000      


Q ss_pred             ----CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          123 ----QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       123 ----q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                          +..|-..+.+.+.-...++++++++.+.+++|+..+... .+|+.|+|..|-
T Consensus       141 ~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~~p~liev~i~~  195 (202)
T cd02006         141 ELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEH-RVPVVVEAILER  195 (202)
T ss_pred             ccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccC-CCcEEEEEEecc
Confidence                135667777887777889999888888888777654332 489999998753

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=95.62  E-value=0.45  Score=41.96  Aligned_cols=136  Identities=11%  Similarity=0.067  Sum_probs=76.7

Q ss_pred             EEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhC-CCcEEEEe
Q 011590           31 HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMIN-TWPIVMIS  109 (482)
Q Consensus        31 ~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~-~~Pvl~i~  109 (482)
                      .+++=.|.....++. ..+..-+++..-.=..+.-+|.|.+.+..|+.+|++--| ++.-.+..+..+... ++|+++|.
T Consensus        16 ~vv~d~G~~~~~~~~-~~~~~~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i~GDG-~f~m~~~el~t~~~~~~~~i~~vV   93 (157)
T cd02001          16 PIVSTTGYASRELYD-VQDRDGHFYMLGSMGLAGSIGLGLALGLSRKVIVVDGDG-SLLMNPGVLLTAGEFTPLNLILVV   93 (157)
T ss_pred             EEEeCCCHhHHHHHH-hhcCCCCEEeecchhhHHHHHHHHHhcCCCcEEEEECch-HHHhcccHHHHHHHhcCCCEEEEE
Confidence            444445554444422 122333555321112233356777766667777776444 233344667777666 59999998


Q ss_pred             CCCCccc-CC-CCCCC-CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          110 GSCDQKD-FG-RGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       110 g~~~~~~-~~-~~~~q-~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      -+-.... .+ ....+ ..|...+.+.+.-...++++++++.+.+++|+    . ..||+.|++..|
T Consensus        94 ~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~----~-~~gp~vi~v~i~  155 (157)
T cd02001          94 LDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLL----A-TTGPTLLHAPIA  155 (157)
T ss_pred             EeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHH----h-CCCCEEEEEEec
Confidence            5543221 11 11122 45777777877666778877777666665555    3 348999998764

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins

Probab=95.55  E-value=0.66  Score=41.35  Aligned_cols=148  Identities=11%  Similarity=-0.005  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhcCCCEEEecCCcC----hHHHHHHHHhC--CCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           16 GNTLAAKSLSLFGATHMFGVVGIP----VTSLANRAVQL--GVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv~~vFgvpG~~----~~~l~~al~~~--~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      .++.|.+.+++. -+.++.-.+..    .....+.+.++  +.+++.+ -.|++.+.+|.|.++. |+..++..+..+=+
T Consensus         3 ~~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~-G~~pi~~~~~a~Fl   80 (167)
T cd07036           3 INEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMN-GLRPIVEIMFADFA   80 (167)
T ss_pred             HHHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHc-CCEEEEEeehHHHH
Confidence            345666555543 34443333211    12345556542  3478854 8999999999999997 55333333445544


Q ss_pred             HhhHHHHHH--hhhC-------CCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHh
Q 011590           89 VHGLAGLSN--GMIN-------TWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERA  158 (482)
Q Consensus        89 ~N~~~ai~~--A~~~-------~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a  158 (482)
                      ..++--|.+  |+.+       +.||+++.....  ..+.+..|......+++.+-...... .+++++..+++.++   
T Consensus        81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg--~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~---  155 (167)
T cd07036          81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAI---  155 (167)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC--CCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH---
Confidence            455554432  4443       699999874433  22334445444478999987766654 45666666665555   


Q ss_pred             hcCCCceEEEEcCc
Q 011590          159 VSGRPGGCYLDLPT  172 (482)
Q Consensus       159 ~~~~~gPv~l~iP~  172 (482)
                       .. +||+++.-|+
T Consensus       156 -~~-~~P~~~~e~k  167 (167)
T cd07036         156 -RD-DDPVIFLEHK  167 (167)
T ss_pred             -hC-CCcEEEEecC
Confidence             33 3899987763

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain

>PRK09212 pyruvate dehydrogenase subunit beta; Validated

Probab=95.30  E-value=1.4  Score=43.91  Aligned_cols=154  Identities=10%  Similarity=0.009  Sum_probs=86.5

Q ss_pred             CCcHHHHHHHHHHhcCC--CEEEecCCc-----ChHHHHHHHH-hC-CCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEE
Q 011590           13 QIDGNTLAAKSLSLFGA--THMFGVVGI-----PVTSLANRAV-QL-GVRFIA-FHNEQSAGYAASAYGYLTGKPGILLT   82 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv--~~vFgvpG~-----~~~~l~~al~-~~-~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~   82 (482)
                      +++..+++.+.|.+..-  +.++.+..+     ....+.+.+. +- .-+++. .-.|++++.+|.|.|....||-+++-
T Consensus         3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~   82 (327)
T PRK09212          3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM   82 (327)
T ss_pred             cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence            44555666666555532  234444332     1222234443 23 256664 47899999999999997666666643


Q ss_pred             cCChhhHhhHHHHHH--hhh-------CCCcEEEEeCCCCcccCCCCCC-CCcCHhhhhccccceeeec-CCcCcHHHHH
Q 011590           83 VSGPGCVHGLAGLSN--GMI-------NTWPIVMISGSCDQKDFGRGDF-QELDQVEAVKPFSKFAVKA-KDITEVPKCV  151 (482)
Q Consensus        83 t~GpG~~N~~~ai~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~-q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l  151 (482)
                      . --=+..++--|.+  |+.       -++||++....-.....| ..| |.++  ++++.+....... .++.++..++
T Consensus        83 ~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G-~tH~~~~e--a~~r~iP~l~V~~P~d~~e~~~~l  158 (327)
T PRK09212         83 T-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVA-AQHSQCYA--AWYSHIPGLKVVAPYFAADCKGLL  158 (327)
T ss_pred             h-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCC-cccccCHH--HHHhcCCCCEEEeeCCHHHHHHHH
Confidence            2 1112233222211  344       279999986653322221 224 4443  8999987766654 4666776666


Q ss_pred             HHHHHHhhcCCCceEEEEcCcchh
Q 011590          152 AQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus       152 ~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      +.|++    . ++|+||..|....
T Consensus       159 ~~a~~----~-~~Pv~i~~~~~~~  177 (327)
T PRK09212        159 KTAIR----D-PNPVIFLENEILY  177 (327)
T ss_pred             HHHHh----C-CCcEEEEEchhhc
Confidence            66553    3 4899997766544

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=95.30  E-value=0.12  Score=47.05  Aligned_cols=106  Identities=15%  Similarity=0.148  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CC-CC---C-CCCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FG-RG---D-FQELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~-~~---~-~q~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--| ++.-.+..|..|...++|++++.-+-....         .+ +.   . ....|.
T Consensus        55 ~lp~aiGa~la~~~~~vv~i~GDG-~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  133 (186)
T cd02015          55 GLPAAIGAKVARPDKTVICIDGDG-SFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDF  133 (186)
T ss_pred             hHHHHHHHHHhCCCCeEEEEEccc-HHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCH
Confidence            334566666654 46777776655 566667889999999999999887654321         00 00   0 123577


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-...++++++++.+.+++|+    .. .||+.|++..|-
T Consensus       134 ~~~a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~~~~  175 (186)
T cd02015         134 VKLAEAYGIKGLRVEKPEELEAALKEAL----AS-DGPVLLDVLVDP  175 (186)
T ss_pred             HHHHHHCCCceEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEeCC
Confidence            7788888777888888777665555554    33 489999998874

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated

Probab=95.21  E-value=2.7  Score=41.82  Aligned_cols=227  Identities=15%  Similarity=0.032  Sum_probs=116.6

Q ss_pred             CCcHHHHHHHHHHhcCC--CEEEecCCc-----ChHHHHHHHHh-CCC-cEEec-CchHHHHHHHHHHHhHhCCcEEEEE
Q 011590           13 QIDGNTLAAKSLSLFGA--THMFGVVGI-----PVTSLANRAVQ-LGV-RFIAF-HNEQSAGYAASAYGYLTGKPGILLT   82 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv--~~vFgvpG~-----~~~~l~~al~~-~~i-~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~   82 (482)
                      +++..+++.+.|.+..-  +.++.+-..     .....++.+.+ -+- +++.+ -.|++++.+|.|.|+...||-+...
T Consensus         3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~   82 (327)
T CHL00144          3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM   82 (327)
T ss_pred             cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence            35555666666655532  234443322     22344555654 233 78754 7899999999999998666665433


Q ss_pred             cCChhhHhhHHHHHH--hhh-------CCCcEEEEeCCCCcccCCCCC-C-CCcCHhhhhccccceeee-cCCcCcHHHH
Q 011590           83 VSGPGCVHGLAGLSN--GMI-------NTWPIVMISGSCDQKDFGRGD-F-QELDQVEAVKPFSKFAVK-AKDITEVPKC  150 (482)
Q Consensus        83 t~GpG~~N~~~ai~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~-~-q~~d~~~~~~~~~k~~~~-~~~~~~~~~~  150 (482)
                      .+- =+.-++--|.+  |+.       -++||++..+.-..  .+.+. | |.+  ..+++.+-.+... +.++.++..+
T Consensus        83 ~~~-f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~--~~~G~tHs~~~--ea~~~~iPgl~V~~Psd~~d~~~~  157 (327)
T CHL00144         83 NMG-FLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVG--RQLGAEHSQRL--ESYFQSVPGLQIVACSTPYNAKGL  157 (327)
T ss_pred             hhh-HHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCC--CCCCccccccH--HHHHhcCCCCEEEEeCCHHHHHHH
Confidence            211 11233333322  444       38899988543212  12232 4 443  4899999888665 4567777666


Q ss_pred             HHHHHHHhhcCCCceEEEEcCcchhcc--ccChhHHHHHHHhhhhhcc-----cccCCCCCHHHHHHHHHHHHhCCCCEE
Q 011590          151 VAQVLERAVSGRPGGCYLDLPTDVLHQ--TISVSEAEKLLKEAESAKE-----TVTQGGIVNSDIDKAVSLLKEAKKPLI  223 (482)
Q Consensus       151 l~~A~~~a~~~~~gPv~l~iP~dv~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~~a~rpvi  223 (482)
                      +..|++    . ++||||.-|..+...  .++... ...+........     ..-....--....++++.|++..--+=
T Consensus       158 l~~a~~----~-~~Pv~ire~~~l~~~~~~v~~~~-~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~  231 (327)
T CHL00144        158 LKSAIR----S-NNPVIFFEHVLLYNLKEEIPDNE-YLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPE  231 (327)
T ss_pred             HHHHHh----C-CCcEEEEEcHHhcCCCCCCCCCC-ccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEE
Confidence            666553    3 499999733333221  122110 001100000000     000111112345566667755332233


Q ss_pred             EEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          224 VFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       224 l~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      ++.--....-..+.|.+.+++++.-|+
T Consensus       232 VId~~~ikPlD~~~i~~~~~~t~~vv~  258 (327)
T CHL00144        232 IIDLISLKPLDLGTISKSVKKTHKVLI  258 (327)
T ss_pred             EEecCcCCCCCHHHHHHHHHhhCcEEE
Confidence            333333334567788889988877544

>PRK14138 NAD-dependent deacetylase; Provisional

Probab=95.21  E-value=0.022  Score=54.18  Aligned_cols=68  Identities=16%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCC--CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhh
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW--SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI  340 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~--~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l  340 (482)
                      ....+++||++|+||+++..+.. .....+  ..+.+++.||.++..... ..++.+.+|+.++|++|.+.+
T Consensus       172 ~~~~~~~aDl~lviGTSl~V~pa-~~l~~~~~~~g~~~i~iN~~~t~~d~-~~~~~i~~~~~~~l~~l~~~~  241 (244)
T PRK14138        172 AIRLSSKASLMIVMGSSLVVYPA-AELPLITVRSGGKLVIVNLGETPLDD-IATLKYNMDVVEFANRVMSEG  241 (244)
T ss_pred             HHHHHhcCCEEEEeCcCCeeecH-hHHHHHHHHcCCeEEEEcCCCCCCCc-ceeEEEeCCHHHHHHHHHHHh
Confidence            33567899999999999875432 221111  356889999998766542 247899999999999998864

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=95.13  E-value=0.15  Score=46.02  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=67.3

Q ss_pred             HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C--------CCC---CCCCcCHhhhhc
Q 011590           66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F--------GRG---DFQELDQVEAVK  132 (482)
Q Consensus        66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~~---~~q~~d~~~~~~  132 (482)
                      +|.|.+.++ +++.++++--|. +.-....|..|...++|+++|.-.-.... .        ++.   .++..|...+.+
T Consensus        56 ~aiGa~la~~~~~vv~i~GDG~-f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~  134 (177)
T cd02010          56 GAIGAKLVYPDRKVVAVSGDGG-FMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAE  134 (177)
T ss_pred             HHHHHHHhCCCCcEEEEEcchH-HHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHH
Confidence            456666554 467787776553 33334678889999999999975443211 0        011   122346667777


Q ss_pred             cccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       133 ~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.-...++.+++++.+.+++|+    . .+||+.|+++.|-
T Consensus       135 a~G~~~~~v~~~~el~~al~~a~----~-~~~p~liev~~~~  171 (177)
T cd02010         135 SFGAKGYRIESADDLLPVLERAL----A-ADGVHVIDCPVDY  171 (177)
T ss_pred             HCCCEEEEECCHHHHHHHHHHHH----h-CCCCEEEEEEecc
Confidence            77667788888888766666665    3 3599999998763

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=95.13  E-value=0.15  Score=55.63  Aligned_cols=117  Identities=12%  Similarity=0.052  Sum_probs=80.0

Q ss_pred             cEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhh
Q 011590           53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEA  130 (482)
Q Consensus        53 ~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~  130 (482)
                      +++. ---|++++.+|.|.++..|+..++ .|..+=+.-+...|..+-..+.||+++........ ..-..||.+.++.+
T Consensus       397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~  475 (653)
T TIGR00232       397 NYIHYGVREFAMGAIMNGIALHGGFKPYG-GTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLAS  475 (653)
T ss_pred             CeEeecccHHHHHHHHHHHHHcCCCeEEE-EEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHH
Confidence            6664 577999999999999977765554 45455444556788888889999999984332221 11235899999999


Q ss_pred             hccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ++.+-.... ++.++.++..+    ++.|.....||+||.+|..-
T Consensus       476 lr~iPn~~v~~PaD~~E~~~~----~~~a~~~~~gP~~irl~r~~  516 (653)
T TIGR00232       476 LRAIPNLSVWRPCDGNETAAA----WKYALESQDGPTALILSRQN  516 (653)
T ss_pred             HhcCCCCEEEeeCCHHHHHHH----HHHHHhcCCCcEEEEEcCCc
Confidence            998765443 44455555444    44444334599999999764

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=95.03  E-value=0.14  Score=47.46  Aligned_cols=138  Identities=12%  Similarity=0.035  Sum_probs=82.5

Q ss_pred             EEEecCCcChHHHHHHHH-hCCCcEEecCch---HHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcE
Q 011590           31 HMFGVVGIPVTSLANRAV-QLGVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPI  105 (482)
Q Consensus        31 ~vFgvpG~~~~~l~~al~-~~~i~~v~~~~E---~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pv  105 (482)
                      .++.=.|.+...+...+. +..-+++....=   .-+.-+|.|.+.+. +++.++++--| ++.-....|..|...++|+
T Consensus        17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv   95 (205)
T cd02003          17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI   95 (205)
T ss_pred             EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence            344444555444444443 233455543211   12333566666554 56777776555 4444567888899999999


Q ss_pred             EEEeCCCCccc--------CCCC------------------CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhh
Q 011590          106 VMISGSCDQKD--------FGRG------------------DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV  159 (482)
Q Consensus       106 l~i~g~~~~~~--------~~~~------------------~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~  159 (482)
                      ++|.-+-....        .+..                  ..+..|...+.+.+.-...++++++++.+.+++|+    
T Consensus        96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~----  171 (205)
T cd02003          96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAK----  171 (205)
T ss_pred             EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHH----
Confidence            98887554221        0000                  01245777788887666778888888776666665    


Q ss_pred             cCCCceEEEEcCcch
Q 011590          160 SGRPGGCYLDLPTDV  174 (482)
Q Consensus       160 ~~~~gPv~l~iP~dv  174 (482)
                      . .+||+.|++..|-
T Consensus       172 ~-~~gp~lIeV~v~~  185 (205)
T cd02003         172 A-SDRTTVIVIKTDP  185 (205)
T ss_pred             h-CCCCEEEEEEeec
Confidence            3 3489999998764

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=94.99  E-value=0.9  Score=40.89  Aligned_cols=105  Identities=17%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------CCC----CCCCcCHhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GRG----DFQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~~----~~q~~d~~~  129 (482)
                      +.-+|.|.+.+. +|+.++++.-|.-..+ +..|.+|...++|+++|.-+-.....        +..    .++..|...
T Consensus        56 ~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  134 (178)
T cd02014          56 GLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAK  134 (178)
T ss_pred             HHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHH
Confidence            334566666654 5788888776654444 67888899999999999876642210        110    123457777


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      +.+.+--...++++++++.+.+++    +... .+|+.|++..|
T Consensus       135 la~a~G~~~~~v~~~~el~~~l~~----a~~~-~~p~liev~~~  173 (178)
T cd02014         135 IAEAMGIKGIRVEDPDELEAALDE----ALAA-DGPVVIDVVTD  173 (178)
T ss_pred             HHHHCCCeEEEeCCHHHHHHHHHH----HHhC-CCCEEEEEEeC
Confidence            888776566788877766555544    4443 48999998765

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=94.96  E-value=0.89  Score=49.41  Aligned_cols=152  Identities=10%  Similarity=0.067  Sum_probs=91.6

Q ss_pred             CcHHHHHHHHHHhcCC--CEEEec----CCc-ChHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590           14 IDGNTLAAKSLSLFGA--THMFGV----VGI-PVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv--~~vFgv----pG~-~~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      .+..+++.+.|.+..-  +.++.+    +++ ....|.+.+   .-+++ ..--|++++.+|.|.|.. |+..+|.+ ..
T Consensus       310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~f---P~R~~d~GIaEq~~vg~AaGlA~~-G~~Pvv~~-~a  384 (617)
T TIGR00204       310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKF---PDRYFDVAIAEQHAVTFAAGMAIE-GYKPFVAI-YS  384 (617)
T ss_pred             ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHC---ccccccCCccHHHHHHHHHHHHHC-CCEEEEEe-cH
Confidence            4566777777766542  234442    222 222333332   23444 346799999999999985 54334333 44


Q ss_pred             hhhHhhHHHHH-HhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCC
Q 011590           86 PGCVHGLAGLS-NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        86 pG~~N~~~ai~-~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      +=+.-++--|. .+-..+.||+++..........-..||......+++.+...... +.++.++..+++.|+    ...+
T Consensus       385 ~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~----~~~~  460 (617)
T TIGR00204       385 TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGY----HYDD  460 (617)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHH----hCCC
Confidence            43444554553 35567899999865443321112357777778999998877544 456667666665555    3345


Q ss_pred             ceEEEEcCcch
Q 011590          164 GGCYLDLPTDV  174 (482)
Q Consensus       164 gPv~l~iP~dv  174 (482)
                      +|+|+.+|...
T Consensus       461 ~Pv~ir~~r~~  471 (617)
T TIGR00204       461 GPIAVRYPRGN  471 (617)
T ss_pred             CCEEEEEccCC
Confidence            99999999764

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PLN02790 transketolase

Probab=94.77  E-value=0.23  Score=54.35  Aligned_cols=117  Identities=12%  Similarity=0.026  Sum_probs=79.9

Q ss_pred             cEEe-cCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhh
Q 011590           53 RFIA-FHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVE  129 (482)
Q Consensus        53 ~~v~-~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~  129 (482)
                      +++. ---|++++.+|.|.++-. |...++ .|..+=++-+..++..+...+.||+++........ ..-..||.+.++.
T Consensus       393 Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~-~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla  471 (654)
T PLN02790        393 RNVRFGVREHGMGAICNGIALHSSGLIPYC-ATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLA  471 (654)
T ss_pred             CeEEeeechHHHHHHHHHHHhcCCCcEEEE-EecHHHHHHHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHH
Confidence            5553 356999999999999974 554443 35555445567788889999999999873322222 1124689999999


Q ss_pred             hhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          130 AVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       130 ~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +++.+...... +.+..++    ..+++.|.....||+||.+|..-
T Consensus       472 ~lR~iPnl~V~~PaD~~E~----~~~l~~al~~~~gP~~irl~R~~  513 (654)
T PLN02790        472 SLRAMPNILMLRPADGNET----AGAYKVAVTNRKRPTVLALSRQK  513 (654)
T ss_pred             HhcCCCCcEEEeCCCHHHH----HHHHHHHHHcCCCCEEEEecCCC
Confidence            99998775543 3444444    44555555434599999999864

>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins

Probab=94.76  E-value=0.088  Score=54.28  Aligned_cols=111  Identities=23%  Similarity=0.233  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcc-cch---HHHHhhhcCC
Q 011590          204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-ATA---ARSLAIGQCD  279 (482)
Q Consensus       204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~-~G~---~~~~~l~~aD  279 (482)
                      =+++++.+++.|+++++|+++ |++.........+.+|++.+|..+- +....+..+..+.+. .|.   ...+..+++|
T Consensus        56 WdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad  133 (415)
T cd02761          56 LEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQDSGWPTTTLGEVKNRAD  133 (415)
T ss_pred             cHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHhCCCccccHHHHHhcCC
Confidence            357899999999999999887 4444333445678899999997432 221212222222111 111   1123335799


Q ss_pred             EEEEecCccCcccccCC------CCC-----CCCCCcEEEEeCCchhh
Q 011590          280 VALVVGARLNWLLHFGE------PPK-----WSKDVKFVLVDVCKEEI  316 (482)
Q Consensus       280 lvl~iG~~~~~~~~~g~------~~~-----~~~~~~ii~id~d~~~~  316 (482)
                      +||++|+++........      ...     ...+.|+|.||+.....
T Consensus       134 ~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~t  181 (415)
T cd02761         134 VIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDT  181 (415)
T ss_pred             EEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcch
Confidence            99999998764321100      000     13567999999866554

Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional

Probab=94.72  E-value=0.12  Score=52.51  Aligned_cols=41  Identities=22%  Similarity=0.334  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590          206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG  246 (482)
Q Consensus       206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g  246 (482)
                      ...++++++|..|+|.+|+-|+|..-+.+...+++|+|.|.
T Consensus       294 ~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~  334 (462)
T PRK09444        294 TTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR  334 (462)
T ss_pred             cCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999988888888888888765

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2

Probab=94.64  E-value=0.021  Score=56.78  Aligned_cols=49  Identities=20%  Similarity=0.267  Sum_probs=36.9

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~  478 (482)
                      ..|++|.|++.|+|.|+|..              +.+|++|+|||.++=...  .+..+.+++|.
T Consensus       109 stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~  173 (332)
T PF00456_consen  109 STGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLD  173 (332)
T ss_dssp             --SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-T
T ss_pred             eccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCC
Confidence            36999999999999999852              457999999999986544  57777788886

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=94.56  E-value=0.44  Score=42.94  Aligned_cols=104  Identities=16%  Similarity=0.097  Sum_probs=64.9

Q ss_pred             HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCC-----------CCCCCcCHhhhh
Q 011590           65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGR-----------GDFQELDQVEAV  131 (482)
Q Consensus        65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~-----------~~~q~~d~~~~~  131 (482)
                      -+|.|.+.+. .|+.++++--|-=..+.+..|..|...++|+++|.-+-.... .+.           ......|...++
T Consensus        58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a  137 (178)
T cd02008          58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALV  137 (178)
T ss_pred             HHHhhHHhhCCCCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHH
Confidence            3456666654 456666654442222336889999999999999987654321 110           001235777778


Q ss_pred             ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590          132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus       132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +.+.-...++.+++++.++ .+|++.|... +||..|++
T Consensus       138 ~a~G~~~~~v~~~~~l~~~-~~al~~a~~~-~gp~lI~v  174 (178)
T cd02008         138 RAIGVKRVVVVDPYDLKAI-REELKEALAV-PGVSVIIA  174 (178)
T ss_pred             HHCCCCEEEecCccCHHHH-HHHHHHHHhC-CCCEEEEE
Confidence            8776667788888888743 3555555543 48888875

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>PRK00481 NAD-dependent deacetylase; Provisional

Probab=94.42  E-value=0.057  Score=51.36  Aligned_cols=67  Identities=19%  Similarity=0.219  Sum_probs=48.5

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCC--CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhh
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPK--WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI  340 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~--~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l  340 (482)
                      ...++++|++|+||+++.... ......  ..+++++|.||.++..... ..++.+.+|+.++|++|.+.+
T Consensus       172 ~~~~~~~dl~lviGTsl~V~p-~~~l~~~~~~~~~~~i~iN~~~~~~~~-~~~~~i~~~~~~~l~~l~~~~  240 (242)
T PRK00481        172 YEALEEADLFIVIGTSLVVYP-AAGLPYEAREHGAKTVEINLEPTPLDS-LFDLVIHGKAGEVVPELVEEL  240 (242)
T ss_pred             HHHHhcCCEEEEECCCceEcC-HhHHHHHHHHCCCeEEEECCCCCCCCC-ccCEEEECCHHHHHHHHHHHh
Confidence            356789999999999986422 222111  1367889999999865532 247899999999999998765

>PRK12753 transketolase; Reviewed

Probab=94.34  E-value=0.36  Score=52.80  Aligned_cols=117  Identities=13%  Similarity=-0.033  Sum_probs=81.0

Q ss_pred             cEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhh
Q 011590           53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEA  130 (482)
Q Consensus        53 ~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~  130 (482)
                      +++. ---|++++.+|.|.++-.|...+ +.|..+=+.=+...|..+-..+.||+++..-..... ..-..||.+.++.+
T Consensus       403 r~i~~GIaEq~mv~~aaGlA~~~G~~P~-~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~  481 (663)
T PRK12753        403 NYIHYGVREFGMTAIANGIAHHGGFVPY-TATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS  481 (663)
T ss_pred             CEEEeeecHHHHHHHHHHHHHhCCCeEE-EEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHH
Confidence            5553 36799999999999996664333 445556556777888888899999999854433333 22246899999999


Q ss_pred             hccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +|.+-..... +.+..++    ..+++.|.....||+||.++..-
T Consensus       482 lR~iPn~~v~~PaD~~E~----~~~~~~al~~~~gP~~irl~R~~  522 (663)
T PRK12753        482 LRLTPNFSTWRPCDQVEA----AVAWKLAIERHNGPTALILSRQN  522 (663)
T ss_pred             HhcCCCCEEEccCCHHHH----HHHHHHHHhcCCCCEEEEecCCC
Confidence            9998765543 3344444    45556665544599999999753

>PRK05333 NAD-dependent deacetylase; Provisional

Probab=94.33  E-value=0.05  Score=53.12  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ....++++|++|+||+++........+... ..+.++|.||.++...... .++.+.+|+.++|++|.+.|.
T Consensus       208 a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~-~~~~i~g~~~evL~~l~~~l~  278 (285)
T PRK05333        208 ARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL-LTLKVEASCAQALAALVARLG  278 (285)
T ss_pred             HHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc-eeEEEeCCHHHHHHHHHHHhC
Confidence            345678999999999999764332211111 2456899999987655322 278999999999999988875

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E

Probab=94.31  E-value=0.032  Score=55.96  Aligned_cols=47  Identities=19%  Similarity=0.074  Sum_probs=37.6

Q ss_pred             CCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhccCChH--HHHHHHHcCc
Q 011590          431 WGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCII  477 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l  477 (482)
                      .|++|.|++.|+|.|+|.+           +.+|++|+|||.++=...  .+..+.+++|
T Consensus       117 TGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL  176 (386)
T cd02017         117 TVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKL  176 (386)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCC
Confidence            5999999999999888742           578999999999886544  4666677787

coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=94.26  E-value=1.3  Score=39.64  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=68.9

Q ss_pred             CCcEEecCchHHHH---HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------
Q 011590           51 GVRFIAFHNEQSAG---YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------  117 (482)
Q Consensus        51 ~i~~v~~~~E~~A~---~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------  117 (482)
                      .-+++.... ..-+   -+|.|.+.+. .++.++++--| ++.-.+..|..|...+.|+++|.-+-.....         
T Consensus        40 ~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~  117 (178)
T cd02002          40 PGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDG-SFMYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVG  117 (178)
T ss_pred             CCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHc
Confidence            346665544 3322   3677777765 56666666544 3344457888898999999999876542110         


Q ss_pred             C----------CC-CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590          118 G----------RG-DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus       118 ~----------~~-~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      +          .. .....|...+++.+.-...++++++++.+.+++    +... .+|+.|++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~----a~~~-~~p~vi~v~  177 (178)
T cd02002         118 PEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALRE----ALAE-GGPALIEVV  177 (178)
T ss_pred             CCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHH----HHhC-CCCEEEEEE
Confidence            0          00 012356677777776566778776665544444    4443 489998874

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>PTZ00089 transketolase; Provisional

Probab=94.24  E-value=0.36  Score=52.85  Aligned_cols=117  Identities=12%  Similarity=0.037  Sum_probs=79.2

Q ss_pred             cEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhh
Q 011590           53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEA  130 (482)
Q Consensus        53 ~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~  130 (482)
                      +++. ---|++++.+|.|.++-.|...+ +.|..+=+.=+...|..+-..+.||+++..-..... ..-..||.+.++.+
T Consensus       404 rfi~~GIaEq~mv~~AaGlA~~~G~~P~-~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~  482 (661)
T PTZ00089        404 RYIRFGVREHAMCAIMNGIAAHGGFIPF-GATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLAL  482 (661)
T ss_pred             CeeeeeecHHHHHHHHHHHHHcCCCeEE-EEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHH
Confidence            5553 35699999999999996563333 334455455777889999999999999963222222 12245899999999


Q ss_pred             hccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ++.+-.-.. ++.+..++    ..+++.|.....||+||.+|..-
T Consensus       483 lR~iPn~~V~~PaD~~E~----~~~l~~al~~~~gP~~irl~R~~  523 (661)
T PTZ00089        483 LRATPNLLVIRPADGTET----SGAYALALANAKTPTILCLSRQN  523 (661)
T ss_pred             HhcCCCcEEEecCCHHHH----HHHHHHHHHcCCCCEEEEecCCC
Confidence            999866443 33444444    45555555334599999999863

>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []

Probab=94.20  E-value=0.12  Score=53.02  Aligned_cols=129  Identities=26%  Similarity=0.324  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC---CcEee-CCCCCCCCCCCCCcccch-------------
Q 011590          207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG---IPFLP-TPMGKGLLPDTHPLAATA-------------  269 (482)
Q Consensus       207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g---~pv~~-t~~~~g~~~~~hp~~~G~-------------  269 (482)
                      ..++++++|..|+|.+|+-|+|..-+.+...+++|+|.|.   +-|-- =..-.|-.|-    ++..             
T Consensus       296 ~~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----HMNVLLAEa~VpYd~~~  371 (463)
T PF02233_consen  296 SAEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPG----HMNVLLAEANVPYDIVK  371 (463)
T ss_dssp             SHHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTT----HHHHHHHHCT--GGGEE
T ss_pred             CHHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC----cceEEEEecCCCHHHHh
Confidence            4678999999999999999999988888888888777654   33210 0001111111    1111             


Q ss_pred             ---HHHHhhhcCCEEEEecCccCc----c-----cccCCC--CCCCCCCcEEEEeCCch--hhc-----ccCC-ceeEec
Q 011590          270 ---ARSLAIGQCDVALVVGARLNW----L-----LHFGEP--PKWSKDVKFVLVDVCKE--EIE-----LRKP-HLGLVG  327 (482)
Q Consensus       270 ---~~~~~l~~aDlvl~iG~~~~~----~-----~~~g~~--~~~~~~~~ii~id~d~~--~~~-----~~~~-~~~i~~  327 (482)
                         ..|.-+.+.|++|+||++-.-    .     ..+|-|  .-| +-+++|.+..+-.  ..+     ++++ +.=+.|
T Consensus       372 emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~-~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfG  450 (463)
T PF02233_consen  372 EMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVW-KAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFG  450 (463)
T ss_dssp             EHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GG-GSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES
T ss_pred             hhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchh-hcCeEEEEEcCCCCCCCCCCCcceecCCcEEEec
Confidence               134567899999999976421    1     112211  112 2234444443221  111     3344 556889


Q ss_pred             cHHHHHHHHHHhh
Q 011590          328 DAKKVLEMINKEI  340 (482)
Q Consensus       328 D~~~~l~~L~~~l  340 (482)
                      |++..++++..++
T Consensus       451 DAk~~~~~l~~~~  463 (463)
T PF02233_consen  451 DAKKTLEELVAEL  463 (463)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhC
Confidence            9999999987653

It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=94.12  E-value=8  Score=42.35  Aligned_cols=154  Identities=12%  Similarity=0.027  Sum_probs=89.9

Q ss_pred             CCcHHHHHHHHHHhcCC--CEEEec-CCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590           13 QIDGNTLAAKSLSLFGA--THMFGV-VGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPG   87 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv--~~vFgv-pG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG   87 (482)
                      .++..+++.+.|.+..=  +.|+++ ++.....-++.+.+ -.-+++. .--|++++.+|.|.|...-||.+++-  .+=
T Consensus       380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy--stF  457 (701)
T PLN02225        380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP--SAF  457 (701)
T ss_pred             CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEee--hhH
Confidence            45777777777766642  344444 22111111233332 2334443 35799999999999987666665533  222


Q ss_pred             hHhhHHHHHH-hhhCCCcEEEEeCCCCcccCC-CC-CCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCC
Q 011590           88 CVHGLAGLSN-GMINTWPIVMISGSCDQKDFG-RG-DFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        88 ~~N~~~ai~~-A~~~~~Pvl~i~g~~~~~~~~-~~-~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      +.-++--|.. +-..+.||.++.....  ..+ .| .||.+..+++++.+....... .++.++..++..|+    ...+
T Consensus       458 lqRAyDQI~~Dval~~lpV~~vid~aG--lvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~----~~~~  531 (701)
T PLN02225        458 LQRAYDQVVHDVDRQRKAVRFVITSAG--LVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAA----YVTD  531 (701)
T ss_pred             HHHHHHHHHHHHHhhcCCceEEEECCc--cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----hcCC
Confidence            3333333333 4556778877754332  223 23 467666679999998877765 45556655554444    3345


Q ss_pred             ceEEEEcCcch
Q 011590          164 GGCYLDLPTDV  174 (482)
Q Consensus       164 gPv~l~iP~dv  174 (482)
                      +|+||.+|...
T Consensus       532 gPv~IR~pRg~  542 (701)
T PLN02225        532 RPVCFRFPRGS  542 (701)
T ss_pred             CCEEEEecccc
Confidence            99999999874

>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional

Probab=94.12  E-value=2  Score=43.23  Aligned_cols=157  Identities=13%  Similarity=0.055  Sum_probs=89.6

Q ss_pred             ccCCcHHHHHHHHHHhcCC--CEEEecCCc-C----hHHHHHHHHh-CC-CcEEe-cCchHHHHHHHHHHHhHhCCcEEE
Q 011590           11 NAQIDGNTLAAKSLSLFGA--THMFGVVGI-P----VTSLANRAVQ-LG-VRFIA-FHNEQSAGYAASAYGYLTGKPGIL   80 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv--~~vFgvpG~-~----~~~l~~al~~-~~-i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~   80 (482)
                      +.+++..+++.+.|.+..-  +.++.+.++ .    ....++.+.+ -+ -+++. .-.|++++.+|.|.|....||-+.
T Consensus        32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~  111 (355)
T PTZ00182         32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE  111 (355)
T ss_pred             ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence            3456677777777776643  234444333 2    1333444543 32 45664 478999999999999975555554


Q ss_pred             EEcCChhhHhhHHHHHH--hhh-------CCCcEEEEeCCCCcccCCCCCC-CCcCHhhhhccccceeeec-CCcCcHHH
Q 011590           81 LTVSGPGCVHGLAGLSN--GMI-------NTWPIVMISGSCDQKDFGRGDF-QELDQVEAVKPFSKFAVKA-KDITEVPK  149 (482)
Q Consensus        81 ~~t~GpG~~N~~~ai~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~-q~~d~~~~~~~~~k~~~~~-~~~~~~~~  149 (482)
                      + ....=+..++--|.+  |+.       -++||++....-.... .-..| |.++  .+++.+-...... .++.++..
T Consensus       112 ~-~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~-~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~~~  187 (355)
T PTZ00182        112 F-MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGH-GGAYHSQSFE--AYFAHVPGLKVVAPSDPEDAKG  187 (355)
T ss_pred             e-chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCC-CCCcccchHH--HHHhcCCCCEEEeeCCHHHHHH
Confidence            3 222222333333322  333       3789987743222211 12234 4443  8899987766654 45666666


Q ss_pred             HHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          150 CVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       150 ~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      +++.|+    .. ++|+||..|..+..
T Consensus       188 ~l~~a~----~~-~~P~~i~~p~~l~r  209 (355)
T PTZ00182        188 LLKAAI----RD-PNPVVFFEPKLLYR  209 (355)
T ss_pred             HHHHHH----hC-CCcEEEEeehHHhC
Confidence            665555    33 49999998876654

>PLN02790 transketolase

Probab=94.09  E-value=0.046  Score=59.63  Aligned_cols=49  Identities=16%  Similarity=0.125  Sum_probs=39.9

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~  478 (482)
                      ..|.+|.+++.|+|.|+|..              +..|++++|||+++=...  .+..+..++||
T Consensus       103 ~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~  167 (654)
T PLN02790        103 TTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLG  167 (654)
T ss_pred             cCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCC
Confidence            46999999999999988854              467999999999875433  57777789997

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=94.05  E-value=0.44  Score=51.50  Aligned_cols=153  Identities=10%  Similarity=0.059  Sum_probs=91.4

Q ss_pred             CcHHHHHHHHHHhcCC--CEEEec-CC---c-ChHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590           14 IDGNTLAAKSLSLFGA--THMFGV-VG---I-PVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv--~~vFgv-pG---~-~~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      .+..+++.+.|.+..=  ..++++ .+   + ....|.+.+   .-+++ ..--|++++.+|.|.+.. |...++.+ ..
T Consensus       279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~---p~R~i~~GIaE~~mvg~A~GlA~~-G~~p~~~~-f~  353 (580)
T PRK05444        279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRF---PDRYFDVGIAEQHAVTFAAGLATE-GLKPVVAI-YS  353 (580)
T ss_pred             ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHh---hhhccCCChHHHHHHHHHHHHHHC-CCeeEEEe-eH
Confidence            4566777777666532  234432 22   2 222333322   12444 235799999999999995 44333332 34


Q ss_pred             hhhHhhHHHHHH-hhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           86 PGCVHGLAGLSN-GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        86 pG~~N~~~ai~~-A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      +=+.-+..-|.+ +-..+.||+++..........-..||.+.+..+++.+-.+.. .+.++.++..+++.|+    ...+
T Consensus       354 ~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~----~~~~  429 (580)
T PRK05444        354 TFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTAL----AYDD  429 (580)
T ss_pred             HHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----hCCC
Confidence            433445554544 566899999997533332211235788888999999988754 4455666655555444    4335


Q ss_pred             ceEEEEcCcchh
Q 011590          164 GGCYLDLPTDVL  175 (482)
Q Consensus       164 gPv~l~iP~dv~  175 (482)
                      +|+||.+|....
T Consensus       430 ~P~~ir~~r~~~  441 (580)
T PRK05444        430 GPIAIRYPRGNG  441 (580)
T ss_pred             CcEEEEecCCCC
Confidence            999999998653

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=94.03  E-value=0.44  Score=43.58  Aligned_cols=149  Identities=11%  Similarity=0.043  Sum_probs=80.0

Q ss_pred             cHHHHHHHHHHhcCC---CE-EEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhH
Q 011590           15 DGNTLAAKSLSLFGA---TH-MFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCV   89 (482)
Q Consensus        15 ~~~~~l~~~L~~~Gv---~~-vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~   89 (482)
                      ..-+++.+.+.+.|+   +. ++.=-|.. . +....  -.+......- ..+.-+|.|.+.+. +|+.++++--|--..
T Consensus         9 ~~~~~~~~~~~~~~~~~~d~ii~~D~G~~-~-~~~~~--~~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~GDGs~f~   83 (193)
T cd03375           9 SILKALAKALAELGIDPEKVVVVSGIGCS-S-RLPYY--FNTYGFHTLH-GRALAVATGVKLANPDLTVIVVSGDGDLAA   83 (193)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCChh-c-eehhh--ccccchhhhh-ccHHHHHHHHHHhCCCCeEEEEeccchHhh
Confidence            355778888888776   33 33333332 2 11111  1111111000 11334677777764 567777765553233


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCccc-CC----------CC---CC-----CCcCHhhhhccc-ccee--eecCCcCcH
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKD-FG----------RG---DF-----QELDQVEAVKPF-SKFA--VKAKDITEV  147 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~----------~~---~~-----q~~d~~~~~~~~-~k~~--~~~~~~~~~  147 (482)
                      -.+..|..|...++|+++|.-+-.... .+          ..   ..     ...|...+.+.+ .++.  .++.+++++
T Consensus        84 m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el  163 (193)
T cd03375          84 IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQL  163 (193)
T ss_pred             ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHH
Confidence            446889999999999999886543221 11          00   00     113555565554 2332  356676666


Q ss_pred             HHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          148 PKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       148 ~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+.+++|+    .. +||+.|++..+
T Consensus       164 ~~al~~al----~~-~gp~vIev~~~  184 (193)
T cd03375         164 KEIIKKAI----QH-KGFSFVEVLSP  184 (193)
T ss_pred             HHHHHHHH----hc-CCCEEEEEECC
Confidence            55555555    33 48999988754

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=94.02  E-value=0.4  Score=42.43  Aligned_cols=102  Identities=14%  Similarity=0.177  Sum_probs=64.5

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC----------C---CCCCCcCHhh
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG----------R---GDFQELDQVE  129 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~----------~---~~~q~~d~~~  129 (482)
                      ..+|.|.+.+. +++.++++--|. +...+.++..|...++|+++|.-+-......          .   ...+..|...
T Consensus        52 ~~~a~Gaa~a~~~~~vv~~~GDG~-~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  130 (168)
T cd00568          52 LPAAIGAALAAPDRPVVCIAGDGG-FMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAA  130 (168)
T ss_pred             HHHHHHHHHhCCCCcEEEEEcCcH-HhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHH
Confidence            34566777666 466776665553 3346688999999999999998765432110          0   1123457777


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      +++.+.-...++.+++++    .+|++.+.+. .||+.|++.
T Consensus       131 ~a~~~G~~~~~v~~~~~l----~~a~~~a~~~-~~p~~i~v~  167 (168)
T cd00568         131 LAEAYGAKGVRVEDPEDL----EAALAEALAA-GGPALIEVK  167 (168)
T ss_pred             HHHHCCCeEEEECCHHHH----HHHHHHHHhC-CCCEEEEEE
Confidence            777765556677765555    4555555444 489998874

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=93.98  E-value=0.64  Score=48.49  Aligned_cols=150  Identities=9%  Similarity=0.023  Sum_probs=91.8

Q ss_pred             cCCcHHHHHHHHHHhcCC--CEEEecCC-----cChHHHHHHHH-hC-CCcEEe-cCchHHHHHHHHHHHhHhCCcEEEE
Q 011590           12 AQIDGNTLAAKSLSLFGA--THMFGVVG-----IPVTSLANRAV-QL-GVRFIA-FHNEQSAGYAASAYGYLTGKPGILL   81 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv--~~vFgvpG-----~~~~~l~~al~-~~-~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~   81 (482)
                      .+++..+++.+.|.+..-  +.+|.+-.     ...+.+.+.|. +- .-+++. .-.|++++.+|.|.|....||-+.+
T Consensus       140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~  219 (464)
T PRK11892        140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF  219 (464)
T ss_pred             cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence            445666677666666542  23444432     12222222222 22 235664 3689999999999999866776654


Q ss_pred             EcCChhhHhhHHHHHH-hh--------hCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcHHHHH
Q 011590           82 TVSGPGCVHGLAGLSN-GM--------INTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCV  151 (482)
Q Consensus        82 ~t~GpG~~N~~~ai~~-A~--------~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l  151 (482)
                      .++. =+..++--|.+ +-        ..+.||++...+.+...  .+.+|..+...+++.+-..... +.++.++..++
T Consensus       220 ~~~~-f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll  296 (464)
T PRK11892        220 MTFN-FAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLL  296 (464)
T ss_pred             ehHH-HHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHH
Confidence            4321 12344444433 33        67899999976654443  4558888889999999776665 45667776666


Q ss_pred             HHHHHHhhcCCCceEEEE
Q 011590          152 AQVLERAVSGRPGGCYLD  169 (482)
Q Consensus       152 ~~A~~~a~~~~~gPv~l~  169 (482)
                      +.|+    .. ++|||+.
T Consensus       297 ~~ai----~~-~~Pv~il  309 (464)
T PRK11892        297 KAAI----RD-PNPVIFL  309 (464)
T ss_pred             HHHh----hC-CCcEEEE
Confidence            6665    33 4899984

>PRK12754 transketolase; Reviewed

Probab=93.93  E-value=0.45  Score=51.90  Aligned_cols=116  Identities=14%  Similarity=-0.028  Sum_probs=80.9

Q ss_pred             cEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC-CCCCCCcCHhhh
Q 011590           53 RFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEA  130 (482)
Q Consensus        53 ~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q~~d~~~~  130 (482)
                      ++| .---|++++.+|.|.++-.|... +..|..+=+.-+...|..+-..+.||+++..-.....-. -..||.+.++.+
T Consensus       403 r~i~~GIaE~~Mv~iaaGlA~~~G~~P-f~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~  481 (663)
T PRK12754        403 NYIHYGVREFGMTAIANGIALHGGFLP-YTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVAS  481 (663)
T ss_pred             CeEeeccchhhHHHHHhhHHhcCCCeE-EEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHH
Confidence            555 34679999999999999767433 344555655677789988889999998877544333322 235899999999


Q ss_pred             hccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          131 VKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       131 ~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      +|.+-.-... +.+..++    ..+++.|...+.||+||.++..
T Consensus       482 lR~iPn~~V~~PaD~~E~----~~~~~~a~~~~~gP~yirl~R~  521 (663)
T PRK12754        482 LRVTPNMSTWRPCDQVES----AVAWKYGVERQDGPTALILSRQ  521 (663)
T ss_pred             HhcCCCcEEecCCCHHHH----HHHHHHHHhCCCCCEEEEeCCC
Confidence            9998765443 3344444    4555555555469999999975

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=93.89  E-value=0.49  Score=51.59  Aligned_cols=151  Identities=11%  Similarity=0.060  Sum_probs=92.7

Q ss_pred             cHHHHHHHHHHhcC--CCEEEec----CCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590           15 DGNTLAAKSLSLFG--ATHMFGV----VGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGP   86 (482)
Q Consensus        15 ~~~~~l~~~L~~~G--v~~vFgv----pG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp   86 (482)
                      +..+++.+.|.+..  -..++++    +|+..  + +.+.+ ..-+++. .--|++++.+|.|.|.. |...++.+ ..+
T Consensus       320 ~~~~~f~~~L~~la~~d~~iv~isadl~~~~~--~-~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~-G~~P~v~~-f~~  394 (641)
T PRK12571        320 SYTSVFGEELTKEAAEDSDIVAITAAMPLGTG--L-DKLQKRFPNRVFDVGIAEQHAVTFAAGLAAA-GLKPFCAV-YST  394 (641)
T ss_pred             hHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC--h-HHHHHhCCCcccccCccHHHHHHHHHHHHHC-CCEEEEEe-hHH
Confidence            55666666666553  2344444    33321  1 33332 2235553 36799999999999984 54344333 445


Q ss_pred             hhHhhHHHHHH-hhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCc
Q 011590           87 GCVHGLAGLSN-GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPG  164 (482)
Q Consensus        87 G~~N~~~ai~~-A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~g  164 (482)
                      =+.-+...|.. +-..+.||+++..........-..||.+.++.+++.+-.+... +.++.++..+++.|+    ....+
T Consensus       395 Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~  470 (641)
T PRK12571        395 FLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAA----AHDDG  470 (641)
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----hCCCC
Confidence            45567777744 6788999999873222211112357888889999999877554 456666666665555    32359


Q ss_pred             eEEEEcCcch
Q 011590          165 GCYLDLPTDV  174 (482)
Q Consensus       165 Pv~l~iP~dv  174 (482)
                      |+||.+|...
T Consensus       471 P~~ir~~r~~  480 (641)
T PRK12571        471 PIAVRFPRGE  480 (641)
T ss_pred             cEEEEEecCc
Confidence            9999999763

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=93.85  E-value=1.6  Score=39.40  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=64.0

Q ss_pred             HHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCC-CcEEEEeCCCCccc-CC---CCCCCCcCHhhhhcccccee
Q 011590           64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINT-WPIVMISGSCDQKD-FG---RGDFQELDQVEAVKPFSKFA  138 (482)
Q Consensus        64 ~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~-~Pvl~i~g~~~~~~-~~---~~~~q~~d~~~~~~~~~k~~  138 (482)
                      .-+|.|.+.+..++.+|++--|- +.-.+..+..|...+ .|+++|.-+-.... .+   .......|...+.+.+.-..
T Consensus        48 lpaAiGa~la~~~~Vv~i~GDG~-f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~  126 (181)
T TIGR03846        48 SSIGLGLALATDRTVIVIDGDGS-LLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRN  126 (181)
T ss_pred             HHHHHHHHHcCCCcEEEEEcchH-HHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCe
Confidence            34567776666788887775553 332346788887777 59999885443211 11   01112456677777765555


Q ss_pred             ee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          139 VK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       139 ~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+ +++++++.+.+    + +.. .+||..|++..|-
T Consensus       127 ~~~v~~~~~l~~al----~-a~~-~~~p~li~v~~~~  157 (181)
T TIGR03846       127 VEKVADEEELRDAL----K-ALA-MKGPTFIHVKVKP  157 (181)
T ss_pred             EEEeCCHHHHHHHH----H-HHc-CCCCEEEEEEeCC
Confidence            55 77777665555    3 333 3489999998763

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=93.84  E-value=0.42  Score=51.69  Aligned_cols=103  Identities=17%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             CCCCcccHHHHHHHHHhccCCCCcEEEeCchhHH----HHHHH--h--hhcC-----CCCee---ecCCCCCcccchHHH
Q 011590          377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM----DVGRA--V--LVQT-----EPRCR---LDAGTWGTMGVGLGY  440 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~----~~~~~--~--~~~~-----~~~~~---~~~~~~g~mG~~l~~  440 (482)
                      ..++...+.-.|...++  .|.|.++.+.|-..+    ..+|.  +  ++..     .|...   ....+.|++|.++++
T Consensus       108 ssLs~vEl~~aL~~vf~--~p~DriI~s~GHqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~  185 (641)
T PLN02234        108 SNLGVVELTVALHYIFN--TPHDKILWDVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSA  185 (641)
T ss_pred             ccchHHHHHHHHHHhcC--CCCCeEEEecchhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHH
Confidence            34676777777777665  277777776653221    11111  1  0111     01100   011246999999999


Q ss_pred             HHHHhhhC----CCCcEEEEEcchhccCChH--HHHHHHHcCccccc
Q 011590          441 CIAAAIAC----PERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISS  481 (482)
Q Consensus       441 AiGaala~----p~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~~  481 (482)
                      |+|.|+|.    .+.+|++++|||.+.-...  .+..+.+++-++++
T Consensus       186 a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nliv  232 (641)
T PLN02234        186 GLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIV  232 (641)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEE
Confidence            99988885    3568999999999875432  34455555545544

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

Probab=93.79  E-value=0.44  Score=43.22  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=66.3

Q ss_pred             HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-----C----CCCCCCcCHhhhhccc
Q 011590           65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-----G----RGDFQELDQVEAVKPF  134 (482)
Q Consensus        65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-----~----~~~~q~~d~~~~~~~~  134 (482)
                      -+|.|.+.+. +|+.++++--| ++.-.+..+.+|...++|+++|.-.-.....     +    ...++..|...+.+.+
T Consensus        57 ~~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~  135 (183)
T cd02005          57 PAALGAALAAPDRRVILLVGDG-SFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVF  135 (183)
T ss_pred             HHHHHHHHhCCCCeEEEEECCc-hhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHh
Confidence            3456666555 36666666544 3444456788999999999999875543211     0    0112335667777776


Q ss_pred             c----ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          135 S----KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       135 ~----k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .    -+..++.+++++.+.+++|++   .. .||+.|++..|
T Consensus       136 G~~~~~~~~~v~~~~el~~al~~a~~---~~-~~p~liev~~~  174 (183)
T cd02005         136 GGGGGGLSFRVKTEGELDEALKDALF---NR-DKLSLIEVILP  174 (183)
T ss_pred             CCCccccEEEecCHHHHHHHHHHHHh---cC-CCcEEEEEEcC
Confidence            5    456778887777666666664   13 48999999875

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.

>PRK08611 pyruvate oxidase; Provisional

Probab=93.74  E-value=0.7  Score=49.95  Aligned_cols=106  Identities=16%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------CC----CCCCCcCHhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GR----GDFQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~----~~~q~~d~~~  129 (482)
                      +.-+|.|.+.+. +|+.++++--| |+.-.+..|..|...++|+++|.-+-.....        +.    ..++..|...
T Consensus       413 glpaaiGa~la~p~~~Vv~i~GDG-sf~m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~  491 (576)
T PRK08611        413 GLPGAIAAKIAFPDRQAIAICGDG-GFSMVMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAK  491 (576)
T ss_pred             hHHHHHHHHHhCCCCcEEEEEccc-HHhhhHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence            344567777765 67888887666 4555568999999999999888876543210        11    1134567788


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +.+.+.....++++++++.+.+++|+    .. .||+.|++..|-
T Consensus       492 lA~a~G~~~~~v~~~~eL~~al~~a~----~~-~~p~lIeV~vd~  531 (576)
T PRK08611        492 FAEACGGKGYRVEKAEELDPAFEEAL----AQ-DKPVIIDVYVDP  531 (576)
T ss_pred             HHHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEeCC
Confidence            88888778889999888877777665    33 489999999874

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=93.73  E-value=0.48  Score=51.70  Aligned_cols=152  Identities=14%  Similarity=0.013  Sum_probs=94.8

Q ss_pred             CcHHHHHHHHHHhcCC--CEEEec----CCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590           14 IDGNTLAAKSLSLFGA--THMFGV----VGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv--~~vFgv----pG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      .+.++++.+.|.+..-  +.|+.+    +|+.-+   +.+.+ -.-+++. .--|++++.+|.|.|...-||.+++  ..
T Consensus       356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl---~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~--fs  430 (677)
T PLN02582        356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YS  430 (677)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccch---HHHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEEe--cH
Confidence            4677788888877643  344444    333222   22322 2344443 3679999999999999766666554  44


Q ss_pred             hhhHhhHHHH-HHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCC
Q 011590           86 PGCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        86 pG~~N~~~ai-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      +=+.-++.-| ..+...+.||+++..........-..||.+....+++.+..+.... .++.++..+++.|+    ...+
T Consensus       431 ~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al----~~~~  506 (677)
T PLN02582        431 SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAA----AIDD  506 (677)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----hCCC
Confidence            4344555544 5566789999988543322221223578877888999988776654 45566655555554    3345


Q ss_pred             ceEEEEcCcch
Q 011590          164 GGCYLDLPTDV  174 (482)
Q Consensus       164 gPv~l~iP~dv  174 (482)
                      +|+||.+|...
T Consensus       507 gPv~IR~pr~~  517 (677)
T PLN02582        507 RPSCFRYPRGN  517 (677)
T ss_pred             CCEEEEEecCC
Confidence            99999999864

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

Probab=93.71  E-value=0.088  Score=48.28  Aligned_cols=51  Identities=18%  Similarity=0.183  Sum_probs=37.3

Q ss_pred             CCCcccchHHHHHHHhhh----CCCCcEEEEEcchhccCChH--HHHHHHHcCcccc
Q 011590          430 TWGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFGFSAV--EVEVWLSCIIMIS  480 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~  480 (482)
                      ..||+|-|++.|+|.|++    ..+.+|.+++|||-+.=...  .+.++++|+|.=+
T Consensus       117 stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NL  173 (243)
T COG3959         117 STGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNL  173 (243)
T ss_pred             cCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcE
Confidence            358888877777776665    45679999999998865532  5677778888533

>PRK05261 putative phosphoketolase; Provisional

Probab=93.69  E-value=1.9  Score=47.70  Aligned_cols=210  Identities=16%  Similarity=0.089  Sum_probs=113.1

Q ss_pred             CcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhh---------------hCCCcEEEEeCCCCccc
Q 011590           52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGM---------------INTWPIVMISGSCDQKD  116 (482)
Q Consensus        52 i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~---------------~~~~Pvl~i~g~~~~~~  116 (482)
                      -++|....|..++.++.||.. +|+.+.+. |+. .+...+-.+.+++               ..++. +++|...-.-.
T Consensus       450 Grvie~LsEh~~~g~~~Gy~L-tG~~~~~~-sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~~~~qg  525 (785)
T PRK05261        450 GRVMEVLSEHLCEGWLEGYLL-TGRHGFFS-SYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSHVWRQD  525 (785)
T ss_pred             CCeeeeecHHHHHHHHHHHHh-cCCCccee-cHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeecceeecC
Confidence            477778899999999999999 89887754 443 4554444455544               34444 44444332222


Q ss_pred             CCCCCCCC---cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccccChhHH-HHHHHhhh
Q 011590          117 FGRGDFQE---LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA-EKLLKEAE  192 (482)
Q Consensus       117 ~~~~~~q~---~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~~~~~-~~~~~~~~  192 (482)
                      ..-..||.   +|++...++=.-..+++.+..++.    .|+++|+..+.+|..|.+...-+.+....... .....   
T Consensus       526 hNG~THQ~Pg~ie~l~~~r~~~~rV~rPaDaNe~l----aa~~~al~s~~~p~~IvlsRQ~lp~~~~~~~a~~~~~k---  598 (785)
T PRK05261        526 HNGFSHQDPGFIDHVANKKPDVIRVYLPPDANTLL----AVADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTK---  598 (785)
T ss_pred             CCCCCCCCchHHHHHHhcCCCcceEEeCCCHHHHH----HHHHHHHHhCCCCEEEEEeCCCCcccCChHHHHHhccC---
Confidence            22235888   888888888555666665555543    55566666667899998887543322221110 00000   


Q ss_pred             hhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccc-cHHHHHHHHHH---hCCcEeeCCC-CCCCCCCCCCccc
Q 011590          193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR-AEGELKKLVES---TGIPFLPTPM-GKGLLPDTHPLAA  267 (482)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~-~~~~l~~lae~---~g~pv~~t~~-~~g~~~~~hp~~~  267 (482)
                       .-+... ...+ +         ...+.-++|++.|.-..- +.++...|.++   +++-|+.-.. -+---++.||..+
T Consensus       599 -Gayi~~-~a~~-~---------~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~l  666 (785)
T PRK05261        599 -GLGIWD-WASN-D---------DGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGL  666 (785)
T ss_pred             -ceEEEE-eccC-C---------CCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCC
Confidence             000000 0000 0         011345677766653332 44555566555   4455554321 1112345788887


Q ss_pred             chHHHHhhhcCC--EEEEe
Q 011590          268 TAARSLAIGQCD--VALVV  284 (482)
Q Consensus       268 G~~~~~~l~~aD--lvl~i  284 (482)
                      ....-+.|-..|  +|+.+
T Consensus       667 sd~~f~~lFt~d~pvif~~  685 (785)
T PRK05261        667 SDREFDALFTTDKPVIFAF  685 (785)
T ss_pred             CHHHHHHhCCCCCcEEEEe
Confidence            765555555566  66655

>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional

Probab=93.57  E-value=0.079  Score=51.15  Aligned_cols=71  Identities=23%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      +...+++||++|+||+++..+.....+.. ...++++|.||.++........++.+.+++.+++. +++.++.
T Consensus       193 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~~~  264 (271)
T PTZ00409        193 AEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDILKG  264 (271)
T ss_pred             HHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHhcc
Confidence            34577899999999999976543322111 13578899999988765433358899999998885 5565543

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]

Probab=93.41  E-value=0.088  Score=51.36  Aligned_cols=52  Identities=17%  Similarity=0.177  Sum_probs=47.4

Q ss_pred             CCcccchHHHHHHHhhhCCCCcEEEEEcch-hccCChHHHHHHHHcCcccccC
Q 011590          431 WGTMGVGLGYCIAAAIACPERLVVAVEGDS-GFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDG-sf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      .+..|-+.+.|.|.++|+++..||++.||| ++-...+.|.-+.|.|..|++|
T Consensus        69 hs~~gra~a~atGik~A~~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~i  121 (294)
T COG1013          69 HSLHGRAAAVATGIKLANPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYI  121 (294)
T ss_pred             eeccCcchhhHHHHHHhccCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEE
Confidence            466788999999999999999999999999 8889999999999999988764

>PTZ00408 NAD-dependent deacetylase; Provisional

Probab=93.30  E-value=0.096  Score=49.73  Aligned_cols=68  Identities=10%  Similarity=0.021  Sum_probs=48.6

Q ss_pred             HhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          273 LAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       273 ~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      .++++||++|+||+++........+.. -..+++++.||.++..... ..++.+.+++.++|++|.+++.
T Consensus       168 ~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~-~~~~~i~g~~~~~l~~l~~~~~  236 (242)
T PTZ00408        168 SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS-QFDESIYGKASVIVPAWVDRVL  236 (242)
T ss_pred             HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc-cCCEEEECCHHHHHHHHHHHHH
Confidence            568899999999999875432211110 1357889999998865542 2367788999999999987663

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=93.30  E-value=0.078  Score=52.24  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=27.3

Q ss_pred             CCcccchHHHHHHHhhhCCCCcEEEEEcchhcc
Q 011590          431 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFG  463 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~  463 (482)
                      .|-+||++.-|.||++-+||.-|+|++|||.+-
T Consensus       139 GGELGYaLshA~GA~~DnPdliv~~vvGDGEaE  171 (379)
T PF09364_consen  139 GGELGYALSHAFGAVFDNPDLIVACVVGDGEAE  171 (379)
T ss_dssp             -SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGG
T ss_pred             CcchhhHHHHHhhcccCCCCeEEEEEecCCccc
Confidence            588999999999999999999999999999863

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>PLN02683 pyruvate dehydrogenase E1 component subunit beta

Probab=93.29  E-value=1.5  Score=44.17  Aligned_cols=153  Identities=10%  Similarity=0.031  Sum_probs=89.8

Q ss_pred             ccCCcHHHHHHHHHHhcCC--CEEEecCCc-----ChHHHHHHHH-hC-CCcEEec-CchHHHHHHHHHHHhHhCCcEEE
Q 011590           11 NAQIDGNTLAAKSLSLFGA--THMFGVVGI-----PVTSLANRAV-QL-GVRFIAF-HNEQSAGYAASAYGYLTGKPGIL   80 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv--~~vFgvpG~-----~~~~l~~al~-~~-~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~   80 (482)
                      +++++..+++.+.|.+..-  +.++.+..+     ..+...+.+. +. .-+++.+ -.|++++.+|.|.|....||-+.
T Consensus        24 ~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~  103 (356)
T PLN02683         24 AKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVE  103 (356)
T ss_pred             ccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEE
Confidence            4456777777777777643  345554432     1222233332 33 3667743 78999999999999987777665


Q ss_pred             EEcCChhhHhhHHHHHH-hhhC--------CCcEEEEeCCCCcccCCCC-CCCCcCHhhhhccccceeeec-CCcCcHHH
Q 011590           81 LTVSGPGCVHGLAGLSN-GMIN--------TWPIVMISGSCDQKDFGRG-DFQELDQVEAVKPFSKFAVKA-KDITEVPK  149 (482)
Q Consensus        81 ~~t~GpG~~N~~~ai~~-A~~~--------~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~  149 (482)
                      +..+ -=+..++--|.+ +...        +.||+++.... . ..|.+ .||..+ ..+++.+-...... .++.++..
T Consensus       104 ~~~~-~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G-~-~~g~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~  179 (356)
T PLN02683        104 FMTF-NFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNG-A-AAGVGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARG  179 (356)
T ss_pred             Eehh-hHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCC-C-CCCCCCccccCH-HHHHhcCCCCEEEEeCCHHHHHH
Confidence            4321 112344444322 2222        38999886542 2 12223 355556 69999987776654 45666655


Q ss_pred             HHHHHHHHhhcCCCceEEEEcCc
Q 011590          150 CVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       150 ~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +++.|+    .. +||+||..+.
T Consensus       180 ~l~~a~----~~-~gPv~ir~~~  197 (356)
T PLN02683        180 LLKAAI----RD-PDPVVFLENE  197 (356)
T ss_pred             HHHHHH----hC-CCcEEEEEeh
Confidence            555444    33 4999997543

>PRK05261 putative phosphoketolase; Provisional

Probab=93.25  E-value=0.078  Score=58.15  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=30.4

Q ss_pred             CCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590          431 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGF  462 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf  462 (482)
                      .|.+|++++.|+|+++.+++..|++++|||.+
T Consensus       141 ~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~  172 (785)
T PRK05261        141 GGELGYSLSHAYGAAFDNPDLIVACVVGDGEA  172 (785)
T ss_pred             CCchhhHHHHHHHHHHcCCCCEEEEEECcCch
Confidence            59999999999999999999999999999993

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=93.18  E-value=2  Score=48.34  Aligned_cols=176  Identities=16%  Similarity=0.090  Sum_probs=96.5

Q ss_pred             CcEEe-cCchHHHHH--HHHHHHhH-hCCcEE-EEEcCCh-hhHhhHHHHHHhhhCCCc-EEEEeCCCCcccCCCC-CCC
Q 011590           52 VRFIA-FHNEQSAGY--AASAYGYL-TGKPGI-LLTVSGP-GCVHGLAGLSNGMINTWP-IVMISGSCDQKDFGRG-DFQ  123 (482)
Q Consensus        52 i~~v~-~~~E~~A~~--~A~g~ar~-tgk~~v-~~~t~Gp-G~~N~~~ai~~A~~~~~P-vl~i~g~~~~~~~~~~-~~q  123 (482)
                      =+++. --.|+++..  +|.|-++. .|++.+ +..|..+ |+.=+.--+-.|-..+.+ +++++.......-+.| .||
T Consensus       573 gR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ  652 (896)
T PRK13012        573 GQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQ  652 (896)
T ss_pred             CcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCc
Confidence            35553 468999944  56666554 344322 3333333 232333333333333444 4444443333333333 478


Q ss_pred             CcCHhhhhccccc-eeeecCCcCcHHHHHHHHHHHhhc-CCCceEEEEcCcchhcc-ccChhHHHHHHHhhhhhcccccC
Q 011590          124 ELDQVEAVKPFSK-FAVKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPTDVLHQ-TISVSEAEKLLKEAESAKETVTQ  200 (482)
Q Consensus       124 ~~d~~~~~~~~~k-~~~~~~~~~~~~~~l~~A~~~a~~-~~~gPv~l~iP~dv~~~-~~~~~~~~~~~~~~~~~~~~~~~  200 (482)
                      .++...+++.+.. -++++.+..++..+++.+++.+.. ...+|+||.+...-..+ ..++....               
T Consensus       653 ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~~~~---------------  717 (896)
T PRK13012        653 DGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEGAEE---------------  717 (896)
T ss_pred             chHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCccchh---------------
Confidence            8888889999865 455667778888888888877533 34589999997543221 11111000               


Q ss_pred             CCCCHHHHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          201 GGIVNSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       201 ~~~~~~~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                            .+.+-...|...+  .-+.|+|.|.-...+.++...|++.+|+.
T Consensus       718 ------~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~  761 (896)
T PRK13012        718 ------GILKGMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVD  761 (896)
T ss_pred             ------ccccCcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCC
Confidence                  0111111122212  25788888876667777788888887764

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=93.16  E-value=0.75  Score=49.64  Aligned_cols=153  Identities=13%  Similarity=0.044  Sum_probs=91.1

Q ss_pred             CCcHHHHHHHHHHhcCCC--EEEec----CCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590           13 QIDGNTLAAKSLSLFGAT--HMFGV----VGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVS   84 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~--~vFgv----pG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~   84 (482)
                      +++..+++.+.|.+..-+  .++.+    +|...  + +.+.+ -.-+++. ---|++++.+|.|.+...-||- | .+.
T Consensus       277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pv-v-~~f  351 (581)
T PRK12315        277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPV-I-FVN  351 (581)
T ss_pred             CcCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEE-E-Eee
Confidence            446667776777665432  34433    22321  2 33322 2235553 3579999999999998544444 3 333


Q ss_pred             ChhhHhhHHHHH-HhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCC
Q 011590           85 GPGCVHGLAGLS-NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGR  162 (482)
Q Consensus        85 GpG~~N~~~ai~-~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~  162 (482)
                      .+=+..++--|. .+-..+.||+++........ .-..||.+.++++++.+...... +.++.++..+++.|+    ...
T Consensus       352 s~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~  426 (581)
T PRK12315        352 STFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWAL----TQH  426 (581)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHH----hCC
Confidence            332334444332 24567899999976332222 23457888889999999887764 455666655555554    433


Q ss_pred             CceEEEEcCcchh
Q 011590          163 PGGCYLDLPTDVL  175 (482)
Q Consensus       163 ~gPv~l~iP~dv~  175 (482)
                      +||+||.+|....
T Consensus       427 ~gP~~ir~~r~~~  439 (581)
T PRK12315        427 EHPVAIRVPEHGV  439 (581)
T ss_pred             CCcEEEEEcCCcc
Confidence            5999999998643

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=93.14  E-value=1.3  Score=43.46  Aligned_cols=150  Identities=15%  Similarity=0.075  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhcCC--CEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 011590           16 GNTLAAKSLSLFGA--THMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv--~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~   92 (482)
                      .-..+.+.|.+.|+  +.+.-+.|.......-...  +...+...|- .+.-+|.|...+. .++.++++--|-...-.+
T Consensus        29 i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl--~~~~~~g~mG-~alpaAiGaklA~pd~~VV~i~GDG~~~~mg~  105 (301)
T PRK05778         29 ILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYF--LSHGLHTLHG-RAIAFATGAKLANPDLEVIVVGGDGDLASIGG  105 (301)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhc--ccCccchhhc-cHHHHHHHHHHHCCCCcEEEEeCccHHHhccH
Confidence            44677888888876  3444444544332111111  1122222332 2445677877765 456666665543334556


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCccc-----------CCC-------CC-CCCcCHhhhhcccc-ceee--ecCCcCcHHHH
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKD-----------FGR-------GD-FQELDQVEAVKPFS-KFAV--KAKDITEVPKC  150 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~-----------~~~-------~~-~q~~d~~~~~~~~~-k~~~--~~~~~~~~~~~  150 (482)
                      ..+..|...++|+++|.-+-....           .+.       +. ...+|...+.+... .+..  ++.+++++.++
T Consensus       106 ~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~a  185 (301)
T PRK05778        106 GHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVEL  185 (301)
T ss_pred             HHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHH
Confidence            789999999999999986443210           110       00 12356666666653 2322  56677776666


Q ss_pred             HHHHHHHhhcCCCceEEEEcCcc
Q 011590          151 VAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       151 l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      |.+|+    .. +||++|+|...
T Consensus       186 i~~A~----~~-~GpalIeV~~~  203 (301)
T PRK05778        186 IKKAI----SH-KGFAFIDVLSP  203 (301)
T ss_pred             HHHHH----hC-CCCEEEEEcCC
Confidence            66655    43 49999987554

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=93.11  E-value=0.33  Score=51.01  Aligned_cols=43  Identities=23%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             CCcccchHHHHHHHhhh----CCCCcEEEEEcchhcc--CChHHHHHHH
Q 011590          431 WGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFG--FSAVEVEVWL  473 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~--~~~~eL~T~~  473 (482)
                      -|.-+.++++|+|.|.|    ..++.||+++|||++-  |....|-.+-
T Consensus       114 ~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag  162 (627)
T COG1154         114 VGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAG  162 (627)
T ss_pred             cCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhh
Confidence            35556688888887766    4578999999999873  4444555554

>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E

Probab=93.10  E-value=0.083  Score=49.64  Aligned_cols=63  Identities=16%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCC--CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHH
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPK--WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMI  336 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~--~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L  336 (482)
                      .+.++++|++|+||+++.-.. ......  -.+++++|.||.++.... ...++.+.+|+.++|++|
T Consensus       159 ~~~~~~~dl~lvlGTsl~v~p-~~~l~~~~~~~~~~~i~iN~~~~~~~-~~~~~~i~g~~~~~l~~l  223 (224)
T cd01412         159 VEALAKADLFLVIGTSGVVYP-AAGLPEEAKERGARVIEINPEPTPLS-PIADFAFRGKAGEVLPAL  223 (224)
T ss_pred             HHHHHcCCEEEEECcCccchh-HHHHHHHHHHCCCeEEEECCCCCCCC-CcCCEEEECCHHHHHHHh
Confidence            356779999999999876432 222111  135788999999887664 334889999999999886

coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=93.07  E-value=0.39  Score=52.19  Aligned_cols=100  Identities=15%  Similarity=0.013  Sum_probs=59.4

Q ss_pred             CCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcC----CCCee-------------ecCCCCCcccchHHHH
Q 011590          379 FNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT----EPRCR-------------LDAGTWGTMGVGLGYC  441 (482)
Q Consensus       379 ~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~----~~~~~-------------~~~~~~g~mG~~l~~A  441 (482)
                      +....+--.|+.+++.  |.|.|+.+.| +..++-. +|..+    ..|++             +...+-|.-+.++++|
T Consensus       123 LGvVELTvALH~VFd~--p~DkiiwDvg-HQ~Y~HK-iLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaa  198 (701)
T PLN02225        123 FAAIELTLALHYVFRA--PVDNILWDAV-EQTYAHK-VLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAG  198 (701)
T ss_pred             ccHHHHHHHHHHHhCC--CCCceeeccc-cccchhh-HhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHH
Confidence            5555666678888853  7777777665 3322212 12211    11221             1122235556689999


Q ss_pred             HHHhhhC----CCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590          442 IAAAIAC----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       442 iGaala~----p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|.|.|+    .++.||+++|||++-  |..-.|-.+...+-++++|
T Consensus       199 lG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livI  245 (701)
T PLN02225        199 LGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVI  245 (701)
T ss_pred             HHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEE
Confidence            9988884    567999999999974  4444566666666565543

>PRK05899 transketolase; Reviewed

Probab=93.05  E-value=0.62  Score=50.83  Aligned_cols=116  Identities=13%  Similarity=0.040  Sum_probs=78.4

Q ss_pred             CcEEe-cCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-CCCCCCCcCHh
Q 011590           52 VRFIA-FHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-GRGDFQELDQV  128 (482)
Q Consensus        52 i~~v~-~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~~~~~q~~d~~  128 (482)
                      -+++. .--|++++.+|.|++... -||-+  .|..+=+.-++..|..+...+.|++++........- .-..||.++..
T Consensus       367 ~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~--~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edi  444 (624)
T PRK05899        367 GRYIHYGVREFAMAAIANGLALHGGFIPFG--GTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQL  444 (624)
T ss_pred             CCeeeeChhHHHHHHHHHHHHHcCCCeEEE--EEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHH
Confidence            35564 578999999999999876 34333  333343456667777777789999999754433222 22357888888


Q ss_pred             hhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          129 EAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       129 ~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+++.+..... .+.++.++..+++.|+    ...++|+||.+|..
T Consensus       445 a~~r~iP~~~V~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~  486 (624)
T PRK05899        445 ASLRAIPNLTVIRPADANETAAAWKYAL----ERKDGPSALVLTRQ  486 (624)
T ss_pred             HHHHhCCCcEEEeCCCHHHHHHHHHHHH----HcCCCCEEEEEeCC
Confidence            89999877654 3456666666665555    33359999999864

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=92.82  E-value=1.7  Score=42.06  Aligned_cols=147  Identities=15%  Similarity=0.100  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcCCC---EEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 011590           17 NTLAAKSLSLFGAT---HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        17 ~~~l~~~L~~~Gv~---~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~   92 (482)
                      -.+|-+.|.+.|++   .++...-+....+...   -+...+...| ..+.-+|.|...+. .++.++++--|-++.-.+
T Consensus        19 l~al~~al~~l~~~~~~~ivvsdiGc~~~~~~~---~~~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig~   94 (279)
T PRK11866         19 LEALRKALAELGIPPENVVVVSGIGCSSNLPEF---LNTYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGYGIGL   94 (279)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCchhhhhhhh---ccCCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHHHccH
Confidence            35677778887753   4444333332221111   1233445566 44556678888875 567777776665677888


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcc---------cCCCCC------C----CCcCHhhhhccc-cceeeec--CCcCcHHHH
Q 011590           93 AGLSNGMINTWPIVMISGSCDQK---------DFGRGD------F----QELDQVEAVKPF-SKFAVKA--KDITEVPKC  150 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~---------~~~~~~------~----q~~d~~~~~~~~-~k~~~~~--~~~~~~~~~  150 (482)
                      +.|..|...++|+++|.-+-...         ..+.+.      +    ..+|...+.+.+ +.|..+.  .++++    
T Consensus        95 ~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~----  170 (279)
T PRK11866         95 GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH----  170 (279)
T ss_pred             HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH----
Confidence            99999999999999987543211         111000      0    113666666654 2344343  33444    


Q ss_pred             HHHHHHHhhcCCCceEEEEcCc
Q 011590          151 VAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       151 l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +.++++.|... +||++|++=.
T Consensus       171 l~~~l~~Al~~-~Gps~I~v~~  191 (279)
T PRK11866        171 LKEIIKEAIKH-KGFSFIDVLS  191 (279)
T ss_pred             HHHHHHHHHhC-CCCEEEEEeC
Confidence            45555555554 4999988754

>PRK12753 transketolase; Reviewed

Probab=92.82  E-value=0.097  Score=57.21  Aligned_cols=50  Identities=20%  Similarity=0.130  Sum_probs=40.1

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMI  479 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i  479 (482)
                      ..|++|.+++.|+|.|+|..              +..|++++|||+++=...  .+..+.+++||-
T Consensus       112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~n  177 (663)
T PRK12753        112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGK  177 (663)
T ss_pred             CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCC
Confidence            46899999999999998842              468999999999875543  466677899973

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=92.78  E-value=0.43  Score=51.70  Aligned_cols=108  Identities=9%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC---C-CC-CCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---G-DF-QELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~---~-~~-q~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--| |+.-.+..|.+|...++|+++|.-.-....         .+.   + .+ +..|.
T Consensus       440 glp~aiGa~la~p~r~vv~i~GDG-~f~~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~  518 (588)
T PRK07525        440 AFPAIIGAKIACPDRPVVGFAGDG-AWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSY  518 (588)
T ss_pred             HHHHHHHHHHhCCCCcEEEEEcCc-hHhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCH
Confidence            445677777765 68888888877 555557899999999999999986543221         000   0 12 23577


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ..+.+.+.-+..++++++++...+.+|+... . +.||+.|++..|
T Consensus       519 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~~-~-~~~p~lIev~~~  562 (588)
T PRK07525        519 AGIAEAMGAEGVVVDTQEELGPALKRAIDAQ-N-EGKTTVIEIMCN  562 (588)
T ss_pred             HHHHHHCCCeEEEECCHHHHHHHHHHHHhcC-C-CCCcEEEEEEec
Confidence            7788888777788988888777777766543 1 238999999987

>PRK06163 hypothetical protein; Provisional

Probab=92.77  E-value=7.9  Score=35.64  Aligned_cols=104  Identities=19%  Similarity=0.114  Sum_probs=64.7

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhh-CCCcEEEEeCCCCcccC-C---CCCCCCcCHhhhhccccce
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMI-NTWPIVMISGSCDQKDF-G---RGDFQELDQVEAVKPFSKF  137 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~-~~~Pvl~i~g~~~~~~~-~---~~~~q~~d~~~~~~~~~k~  137 (482)
                      .-+|.|.+.+. +|+.+|++--| |+.=.+..|..+.. .++|+++|.-+-..... +   ....+..|...+.+.+.-.
T Consensus        63 lpaAiGaalA~p~r~Vv~i~GDG-~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~  141 (202)
T PRK06163         63 FPIALGVALAQPKRRVIALEGDG-SLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLE  141 (202)
T ss_pred             HHHHHHHHHhCCCCeEEEEEcch-HHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCc
Confidence            33566666654 45666666443 34444578888754 47888888876532221 1   1112335766777776554


Q ss_pred             -eeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          138 -AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       138 -~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                       ..++++++++...+++|+    . ..||+.|++..|
T Consensus       142 ~~~~v~~~~el~~al~~a~----~-~~~p~lIeV~i~  173 (202)
T PRK06163        142 NSHWAADEAHFEALVDQAL----S-GPGPSFIAVRID  173 (202)
T ss_pred             eEEEeCCHHHHHHHHHHHH----h-CCCCEEEEEEec
Confidence             567888888777776665    3 358999999876

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=92.72  E-value=0.12  Score=56.17  Aligned_cols=103  Identities=15%  Similarity=0.055  Sum_probs=62.6

Q ss_pred             CCCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHh---------hhcCCC-----C---eeecCCCCCcccchHH
Q 011590          377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV---------LVQTEP-----R---CRLDAGTWGTMGVGLG  439 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~---------~~~~~~-----~---~~~~~~~~g~mG~~l~  439 (482)
                      ..++...+.-.|...++  .|.|.++++.|- ..+....+         ++....     .   +-....+.|++|.+++
T Consensus        75 ~~Ls~vel~~aL~~~~~--~p~Dr~i~s~GH-~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls  151 (677)
T PLN02582         75 SSLGVVELTVALHYVFN--APQDKILWDVGH-QSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTIS  151 (677)
T ss_pred             ccccHHHHHHHHHHhhC--CCCCeEEEECcc-hHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHH
Confidence            35677777777777664  266666666542 22211111         111100     0   0111124688999999


Q ss_pred             HHHHHhhhC----CCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          440 YCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       440 ~AiGaala~----p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      .|+|.|+|.    .++.|++++|||++.-..  -.|-.+..+++|+++|
T Consensus       152 ~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~i  200 (677)
T PLN02582        152 AGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVI  200 (677)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEE
Confidence            999998884    467899999999987543  2455666778887754

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=92.72  E-value=0.12  Score=56.12  Aligned_cols=53  Identities=17%  Similarity=0.134  Sum_probs=41.2

Q ss_pred             CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      ..|++|.+++.|+|.|+|.    ++..|++++|||+++-..  -.+..+..+++|+++|
T Consensus       109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~i  167 (617)
T TIGR00204       109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVI  167 (617)
T ss_pred             CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEE
Confidence            4577888999999988885    567899999999987543  3566677889988553

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=92.69  E-value=2.4  Score=46.00  Aligned_cols=152  Identities=11%  Similarity=-0.025  Sum_probs=89.0

Q ss_pred             CcHHHHHHHHHHhcCCC--EEEe----cCCcChHHHHHHHH-hCCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590           14 IDGNTLAAKSLSLFGAT--HMFG----VVGIPVTSLANRAV-QLGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~--~vFg----vpG~~~~~l~~al~-~~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      ++..+++.+.|.+..-+  .|+.    ++|+..+   +.+. +-.-+++. .--|++++.+|.|.|...-||-+++  ..
T Consensus       357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~---~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~--fs  431 (641)
T PLN02234        357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTML---NLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI--YS  431 (641)
T ss_pred             CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcch---HHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEe--hH
Confidence            56777777777765432  2332    2333322   2232 22234443 3579999999999999755655554  33


Q ss_pred             hhhHhhHHHH-HHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCC
Q 011590           86 PGCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        86 pG~~N~~~ai-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      +=+.-++--| ..+...+.||+++..........-..||......+++.+-...... .++.++..+    ++.|...+.
T Consensus       432 ~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~----l~~a~~~~~  507 (641)
T PLN02234        432 SFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNM----VATAAAIDD  507 (641)
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHH----HHHHHhCCC
Confidence            3233444444 2346789999888632222111123477777788888887766544 445555444    444444345


Q ss_pred             ceEEEEcCcch
Q 011590          164 GGCYLDLPTDV  174 (482)
Q Consensus       164 gPv~l~iP~dv  174 (482)
                      +|+|+.+|...
T Consensus       508 ~Pv~ir~~R~~  518 (641)
T PLN02234        508 RPSCFRYHRGN  518 (641)
T ss_pred             CCEEEEeeccc
Confidence            99999999864

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=92.68  E-value=2.9  Score=37.66  Aligned_cols=101  Identities=12%  Similarity=0.128  Sum_probs=59.0

Q ss_pred             HHHHHHHhHhCCcEEEEEcCChhhHh-hHHHHHHhhhCCC-cEEEEeCCCCcc-cCCC---CCCCCcCHhhhhcccccee
Q 011590           65 YAASAYGYLTGKPGILLTVSGPGCVH-GLAGLSNGMINTW-PIVMISGSCDQK-DFGR---GDFQELDQVEAVKPFSKFA  138 (482)
Q Consensus        65 ~~A~g~ar~tgk~~v~~~t~GpG~~N-~~~ai~~A~~~~~-Pvl~i~g~~~~~-~~~~---~~~q~~d~~~~~~~~~k~~  138 (482)
                      -+|.|.+.+..++.+|++  |=|... .+..+.++...+. |++++.-+-... ..+.   ......|...+.+.+.-..
T Consensus        49 p~AiGaala~~~~vv~i~--GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~  126 (179)
T cd03372          49 SIGLGLALAQPRKVIVID--GDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDN  126 (179)
T ss_pred             HHHHHHHhcCCCcEEEEE--CCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcCCCe
Confidence            456666665446666665  444443 3678888888875 677776443221 1110   1112356666777765555


Q ss_pred             eecC-CcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          139 VKAK-DITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       139 ~~~~-~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .++. +++++    ++|++.+.   .||..|++..|-
T Consensus       127 ~~v~~~~~el----~~al~~a~---~gp~lIev~~~~  156 (179)
T cd03372         127 VATVASEEAF----EKAVEQAL---DGPSFIHVKIKP  156 (179)
T ss_pred             EEecCCHHHH----HHHHHHhc---CCCEEEEEEEcC
Confidence            5665 55554    55555554   389999998863

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>PRK08617 acetolactate synthase; Reviewed

Probab=92.65  E-value=0.84  Score=49.05  Aligned_cols=102  Identities=24%  Similarity=0.337  Sum_probs=71.6

Q ss_pred             HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C--------CC--C-CCCCcCHhhhhc
Q 011590           66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F--------GR--G-DFQELDQVEAVK  132 (482)
Q Consensus        66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~--~-~~q~~d~~~~~~  132 (482)
                      +|.|.+.+. +|+.++++--| |+.-.++.|.+|...++|+++|.-.-.... .        +.  + .++..|...+.+
T Consensus       422 aaiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~  500 (552)
T PRK08617        422 WAIAAALVRPGKKVVSVSGDG-GFLFSAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAE  500 (552)
T ss_pred             HHHhhHhhcCCCcEEEEEech-HHhhhHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHH
Confidence            566666554 67888777655 455556899999999999998876553211 0        10  0 123467778888


Q ss_pred             cccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       133 ~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+.-...++++++++.+.+++|+    . ..+|+.|++..|
T Consensus       501 a~G~~~~~v~~~~eL~~al~~a~----~-~~~p~liev~~~  536 (552)
T PRK08617        501 SFGAKGLRVTSPDELEPVLREAL----A-TDGPVVIDIPVD  536 (552)
T ss_pred             HCCCeEEEECCHHHHHHHHHHHH----h-CCCcEEEEEEec
Confidence            88888889999888877777776    3 348999999876

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=92.61  E-value=0.47  Score=51.14  Aligned_cols=109  Identities=17%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhH-HHHHHhhhCCCcEEEEeCCCCcccC---------CC-----------CC
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGL-AGLSNGMINTWPIVMISGSCDQKDF---------GR-----------GD  121 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~-~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~-----------~~  121 (482)
                      .-+|.|.+.++ +|+.+|++--|-=..+.. ..+..|...++|+++|.-+-.....         +.           ..
T Consensus       436 lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~  515 (569)
T PRK08327        436 LGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTD  515 (569)
T ss_pred             hHHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCccccccccccccccc
Confidence            34566666654 677777775443222222 3477788899999999876642110         00           01


Q ss_pred             C-CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          122 F-QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       122 ~-q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      + ...|...+.+.+.-+..++++++++.+.+++|++...+++ ||+.|++..|
T Consensus       516 ~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~-gp~liev~v~  567 (569)
T PRK08327        516 FDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGR-RSAVLDVIVD  567 (569)
T ss_pred             CCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEcc
Confidence            1 2357777888887788899999999999998887765544 8999999875

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=92.55  E-value=0.099  Score=57.10  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=40.2

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMIS  480 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~  480 (482)
                      ..|++|.+++.|+|.|+|..              +..|++++|||+++=...  .+..+..++||-+
T Consensus       108 ~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nL  174 (653)
T TIGR00232       108 TTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKL  174 (653)
T ss_pred             CCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcE
Confidence            35999999999999988842              567999999999876432  4666778999843

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>PRK12754 transketolase; Reviewed

Probab=92.52  E-value=0.12  Score=56.29  Aligned_cols=51  Identities=20%  Similarity=0.139  Sum_probs=40.7

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMIS  480 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~  480 (482)
                      ..|++|.+++.|+|.|+|..              +..|++++|||+++=...  .+..+..++||-+
T Consensus       112 stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nL  178 (663)
T PRK12754        112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKL  178 (663)
T ss_pred             cCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCE
Confidence            36899999999999998832              567999999999886533  4666778999843

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=92.47  E-value=2.1  Score=41.56  Aligned_cols=147  Identities=14%  Similarity=0.112  Sum_probs=80.7

Q ss_pred             HHHHHHHHhcCC---CEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHH
Q 011590           18 TLAAKSLSLFGA---THMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        18 ~~l~~~L~~~Gv---~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~   93 (482)
                      ..+++.|.+.++   +.++. -|......+-..  -....+...| ..+.-+|.|..++. +++.++++--|-.......
T Consensus        29 ~~v~~al~e~~~~~~d~ivv-sdiGc~~~~~~~--~~~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g~~  104 (277)
T PRK09628         29 KSIIRAIDKLGWNMDDVCVV-SGIGCSGRFSSY--VNCNTVHTTH-GRAVAYATGIKLANPDKHVIVVSGDGDGLAIGGN  104 (277)
T ss_pred             HHHHHHHHHhcCCCCCEEEE-eCcCHHHHhhcc--CCCCceeecc-ccHHHHHHHHHHHCCCCeEEEEECchHHHHhhHH
Confidence            567788888763   34433 333332221111  1233333334 24566788888875 5666666654432222234


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccC-----------C-------CCC-CCCcCHhhhhcccc-cee--eecCCcCcHHHHH
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDF-----------G-------RGD-FQELDQVEAVKPFS-KFA--VKAKDITEVPKCV  151 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~-----------~-------~~~-~q~~d~~~~~~~~~-k~~--~~~~~~~~~~~~l  151 (482)
                      .+..|...++|+++|.-+-.....           +       .+. ...+|...+.+.+. ++.  .++.+++++.+.+
T Consensus       105 el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al  184 (277)
T PRK09628        105 HTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLL  184 (277)
T ss_pred             HHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHH
Confidence            555689999999999854322110           0       001 12245566666653 232  4777777776666


Q ss_pred             HHHHHHhhcCCCceEEEEcCcc
Q 011590          152 AQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       152 ~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ++|+    .. +||+.|++..+
T Consensus       185 ~~Al----~~-~Gp~lIeV~~~  201 (277)
T PRK09628        185 VKGF----SH-KGFSFFDVFSN  201 (277)
T ss_pred             HHHH----hC-CCCEEEEEcCC
Confidence            6665    43 49999988765

>PRK13761 hypothetical protein; Provisional

Probab=92.38  E-value=1.3  Score=40.78  Aligned_cols=132  Identities=17%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCC------------------CCCCC-CCc
Q 011590          205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG------------------LLPDT-HPL  265 (482)
Q Consensus       205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g------------------~~~~~-hp~  265 (482)
                      ..+.+.++.+|..|++|||=+-+.+. +-..+++.+||+.+|+++=...+.+-                  +.-.+ ...
T Consensus        54 ~~A~raAaA~LLlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNLF~RT~eR~~~I~~~l~~~Ga~~vlG~~~~~~  132 (248)
T PRK13761         54 LEAERAAAALLLLAKHPVISVNGNTA-ALVPEEIVELAEALNAKLEVNLFYRTEERVEKIAEVLREHGAKEVLGTDEDAR  132 (248)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcchHH-hhChHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHcCCceeeCCCCcCc
Confidence            45677788899999999999987764 46788999999999999865544210                  00000 000


Q ss_pred             ccc--h----HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHh
Q 011590          266 AAT--A----ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKE  339 (482)
Q Consensus       266 ~~G--~----~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~  339 (482)
                      .-|  .    ...+-+-.||+|++=   +.+-+..-  ..-.-++++|.||.+|..-.....++.|+-++--++..|.+.
T Consensus       133 ip~L~~~R~~v~~~GIy~ADVVLVP---LEDGDR~E--aL~~mGK~VI~IDLNPLSRTar~A~itIVDni~RA~p~m~~~  207 (248)
T PRK13761        133 IPGLDHERAKVSEDGIYSADVVLVP---LEDGDRTE--ALVKMGKTVIAIDLNPLSRTARTATITIVDNITRAVPNMTEY  207 (248)
T ss_pred             CCCCCCccceECcccceeccEEEec---CCCCcHHH--HHHHcCCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHH
Confidence            000  0    011224456766653   22100000  001235789999999987766777999999988888887776


Q ss_pred             hhc
Q 011590          340 IKD  342 (482)
Q Consensus       340 l~~  342 (482)
                      .++
T Consensus       208 ~~e  210 (248)
T PRK13761        208 ARE  210 (248)
T ss_pred             HHH
Confidence            543

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=92.36  E-value=0.42  Score=51.20  Aligned_cols=105  Identities=20%  Similarity=0.263  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC--C-CCCCcCHhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR--G-DFQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~--~-~~q~~d~~~  129 (482)
                      +.-+|.|.+.+. +|+.++++--| ++.-....|.+|...++|+++|.-.-....         .++  + .+...|...
T Consensus       413 ~lpaaiGa~la~~~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~  491 (539)
T TIGR02418       413 ALPWAIGAALVRPNTKVVSVSGDG-GFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVK  491 (539)
T ss_pred             HHHHHHHHHHhCCCCcEEEEEcch-hhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence            444677777654 57877777655 344445789999999999999987643211         010  0 223467788


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      +.+.+..+..++++++++.+.+++|+.     ..||..|++..|
T Consensus       492 lA~a~G~~~~~V~~~~eL~~al~~a~~-----~~~p~lIev~v~  530 (539)
T TIGR02418       492 YAESFGAKGLRVESPDQLEPTLRQAME-----VEGPVVVDIPVD  530 (539)
T ss_pred             HHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence            888888888999998888777777653     248999999876

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=92.31  E-value=0.098  Score=50.29  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=42.3

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCC-CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHH
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPP-KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVL  333 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~-~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l  333 (482)
                      +.+.+++||++|+||+++..+.....+. ....++++|.||.++...+. ..++.+.+++.++|
T Consensus       198 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~-~a~~~i~~~~~~~l  260 (260)
T cd01409         198 AAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADH-LATLKVDARCGEVL  260 (260)
T ss_pred             HHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCc-cccEEEeCChhhhC
Confidence            4467789999999999997543222111 11357899999998866542 24788888877653

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.

>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]

Probab=92.30  E-value=0.66  Score=45.64  Aligned_cols=40  Identities=33%  Similarity=0.414  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590          207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG  246 (482)
Q Consensus       207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g  246 (482)
                      ..++++.+|++|+..+|+-|+|..-+.+...++++++++.
T Consensus       297 saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~  336 (463)
T COG1282         297 SAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLR  336 (463)
T ss_pred             CHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHH
Confidence            4578899999999999999999988777777777777664

>PTZ00089 transketolase; Provisional

Probab=92.29  E-value=0.11  Score=56.75  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMI  479 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i  479 (482)
                      ..|++|.+++.|+|.|+|..              +..|++++|||+++=...  .+..+..++||-
T Consensus       114 ~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~n  179 (661)
T PTZ00089        114 TTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEK  179 (661)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCC
Confidence            36899999999999988852              567999999999875433  466677889873

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha

Probab=92.02  E-value=0.13  Score=51.71  Aligned_cols=51  Identities=16%  Similarity=0.089  Sum_probs=36.8

Q ss_pred             CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCChHHHHH----HHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEVEV----WLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~~eL~T----~~r~~l~i~~~  482 (482)
                      ..+.+|.++|.|+|+++|.    .++.++++.|||+..  -.++|.    +..+++|++.|
T Consensus       136 ~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~--eG~~~Ealn~A~~~~lPvvfv  194 (362)
T PLN02269        136 GHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAAN--QGQLFEALNIAALWDLPVIFV  194 (362)
T ss_pred             cCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcc--cCHHHHHHHHhhccCcCEEEE
Confidence            3477888899999988884    467899999999943  334443    34578887653

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=91.97  E-value=1.5  Score=49.18  Aligned_cols=180  Identities=17%  Similarity=0.126  Sum_probs=110.8

Q ss_pred             CcEEe-cCchHHHHH--HHHHHHhH-hCCcEEEEE-cCCh-hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCC-C-CCC
Q 011590           52 VRFIA-FHNEQSAGY--AASAYGYL-TGKPGILLT-VSGP-GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR-G-DFQ  123 (482)
Q Consensus        52 i~~v~-~~~E~~A~~--~A~g~ar~-tgk~~v~~~-t~Gp-G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q  123 (482)
                      =+++. --.|++++.  +|.|-++. .|++.+.++ +..+ |+.=+.--|-.|-..+.++.++.+.......+. | .||
T Consensus       560 ~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq  639 (889)
T TIGR03186       560 GQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQ  639 (889)
T ss_pred             CcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCccccc
Confidence            45553 478999987  88887775 455444443 3333 344555667777778889888888876643333 3 467


Q ss_pred             CcCHhhhhccccce-eeecCCcCcHHHHHHHHHHHhhcC-CCceEEEEcCcchhccc-cChhHHHHHHHhhhhhcccccC
Q 011590          124 ELDQVEAVKPFSKF-AVKAKDITEVPKCVAQVLERAVSG-RPGGCYLDLPTDVLHQT-ISVSEAEKLLKEAESAKETVTQ  200 (482)
Q Consensus       124 ~~d~~~~~~~~~k~-~~~~~~~~~~~~~l~~A~~~a~~~-~~gPv~l~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~  200 (482)
                      .+....+++.+-.. ++.+.++.++..++..+++.+... ..||+||.+...-...+ .+.......             
T Consensus       640 ~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~~~~~~~~~-------------  706 (889)
T TIGR03186       640 DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPEDRLDAV-------------  706 (889)
T ss_pred             chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCcCCCcccch-------------
Confidence            77778888887654 445667788999999999866654 46999999986522111 111000000             


Q ss_pred             CCCCHHHHHHHHHHHHh---CCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          201 GGIVNSDIDKAVSLLKE---AKKPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       201 ~~~~~~~~~~~~~~L~~---a~rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                          +..+-+....|..   ...-+.|+|.|.....+.++...|++.+|+-
T Consensus       707 ----~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~  753 (889)
T TIGR03186       707 ----RRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGID  753 (889)
T ss_pred             ----hcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCC
Confidence                0000011122331   1235788888877677778888888876654

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=91.94  E-value=0.27  Score=53.28  Aligned_cols=109  Identities=11%  Similarity=0.015  Sum_probs=74.2

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC---C-CC-------
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---G-DF-------  122 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~---~-~~-------  122 (482)
                      .-+|.|.+.+. .|+.++++--| |+.=...-|.+|...++|+++|.-+-.....         +.   + .+       
T Consensus       424 lpaaiGa~lA~pdr~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~  502 (588)
T TIGR01504       424 IPAALGVCAADPKRNVVALSGDY-DFQFMIEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSE  502 (588)
T ss_pred             HhHHHhhhhhCCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccccceeecccccccc
Confidence            34455655554 46777776555 3434457899999999999999876543210         00   0 00       


Q ss_pred             ---CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          123 ---QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       123 ---q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                         ...|-..+.+.+..+..++++++++.+.+++|++..... .+|+.|++..|-
T Consensus       503 ~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~-~~p~lIeV~i~~  556 (588)
T TIGR01504       503 VNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEH-RVPVVVEVILER  556 (588)
T ss_pred             ccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccC-CCcEEEEEEecc
Confidence               125777888888888899999999888888877654323 389999999864

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=91.87  E-value=1.1  Score=45.01  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=61.9

Q ss_pred             EEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCCcCHhhhhccccceeeecCCcCc--HHHH
Q 011590           78 GILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQELDQVEAVKPFSKFAVKAKDITE--VPKC  150 (482)
Q Consensus        78 ~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~~k~~~~~~~~~~--~~~~  150 (482)
                      .++++..|=|..|.   ..++..|...++|+|+|.-+-.........  ....|.....+.+.-...+++..+.  +.+.
T Consensus       145 ~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a  224 (341)
T TIGR03181       145 NVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAV  224 (341)
T ss_pred             CEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHH
Confidence            35555557777663   356778999999999999865321110000  1123555666666556667766654  4778


Q ss_pred             HHHHHHHhhcCCCceEEEEcCcc
Q 011590          151 VAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       151 l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      +.+|++.|...+ ||+.|++-..
T Consensus       225 ~~~A~~~a~~~~-gP~lIev~t~  246 (341)
T TIGR03181       225 TKEAVERARSGG-GPTLIEAVTY  246 (341)
T ss_pred             HHHHHHHHHcCC-CCEEEEEEee
Confidence            888999898765 9999999654

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=91.83  E-value=0.9  Score=49.09  Aligned_cols=105  Identities=19%  Similarity=0.197  Sum_probs=73.1

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCCC----CCCCcCHhhh
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGRG----DFQELDQVEA  130 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~~----~~q~~d~~~~  130 (482)
                      .-+|.|.+.+. +|+.+|++--| ++.-.+..|..|...++|+++|.-+-....        .+..    .++..|...+
T Consensus       414 ~paAiGa~la~p~~~vv~i~GDG-sf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~l  492 (578)
T PRK06546        414 LPHAIGAQLADPGRQVISMSGDG-GLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAI  492 (578)
T ss_pred             hHHHHHHHHhCCCCcEEEEEcCc-hHhhhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHHH
Confidence            34677877764 57777777555 344455788999999999999987554321        1100    1345677788


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.-...++++++++.+.+++|+.    . .||+.|++..|-
T Consensus       493 A~a~G~~~~~v~~~~el~~al~~a~~----~-~gp~lIev~~~~  531 (578)
T PRK06546        493 AAALGIHAVRVEDPKDVRGALREAFA----H-PGPALVDVVTDP  531 (578)
T ss_pred             HHHCCCeeEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence            88887778889888887766666653    3 499999998764

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=91.76  E-value=3.6  Score=44.45  Aligned_cols=106  Identities=15%  Similarity=0.190  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------CC---C-CCCCcCHhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GR---G-DFQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~---~-~~q~~d~~~  129 (482)
                      +.-+|.|.+.+. +|+.++++--| |+.-.+..|..|...++|+++|.-+-.....        +.   + .++..|-..
T Consensus       413 ~lpaAiGa~la~p~r~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~  491 (574)
T PRK09124        413 AMPQALGAQAAHPGRQVVALSGDG-GFSMLMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAA  491 (574)
T ss_pred             hHHHHHHHHHhCCCCeEEEEecCc-HHhccHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHH
Confidence            455677777665 56777777655 5666678899999999999998876542210        11   0 123457777


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +.+.+.....++++++++.+.+++|+.     ..||+.|++..|-
T Consensus       492 lA~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIev~i~~  531 (574)
T PRK09124        492 IAEACGITGIRVEKASELDGALQRAFA-----HDGPALVDVVTAK  531 (574)
T ss_pred             HHHHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEecC
Confidence            888888888899998888777776653     3489999998874

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=91.70  E-value=0.79  Score=44.93  Aligned_cols=109  Identities=14%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             HHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCCcCHhhhhcccccee
Q 011590           67 ASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQELDQVEAVKPFSKFA  138 (482)
Q Consensus        67 A~g~ar~t---gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~~k~~  138 (482)
                      |.|.+.+.   ++..++++..|=|..+.   .-++..|...++|+|+|.-+-.........  ....|...+.+.+.-..
T Consensus       113 a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~  192 (293)
T cd02000         113 AAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPG  192 (293)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCE
Confidence            44554432   22335555557776654   357888999999999999765321111100  11235555666665555


Q ss_pred             eecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          139 VKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       139 ~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      .+++  +++++.+.+.+|++.+..++ +|+.|++-.+-..
T Consensus       193 ~~Vdg~d~~~v~~a~~~A~~~ar~~~-~P~lIev~~~r~~  231 (293)
T cd02000         193 IRVDGNDVLAVYEAAKEAVERARAGG-GPTLIEAVTYRLG  231 (293)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEEeccC
Confidence            6665  34578888899998888765 8999999765443

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=91.69  E-value=3.8  Score=39.73  Aligned_cols=149  Identities=16%  Similarity=0.127  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhcCCC--EEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 011590           16 GNTLAAKSLSLFGAT--HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv~--~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~   92 (482)
                      .-.+|.+.|.+.|+.  ..+-+.|...........  +.......|-.+. -+|.|...+. +++.++++--|-...+.+
T Consensus        19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~--~~~~~~~~mG~al-p~AiGaklA~pd~~VVai~GDG~~~~iG~   95 (280)
T PRK11869         19 IRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYI--NVNGFHTLHGRAI-PAATAVKATNPELTVIAEGGDGDMYAEGG   95 (280)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHc--cCCCCCcccccHH-HHHHHHHHHCCCCcEEEEECchHHhhCcH
Confidence            345677788887764  344444433332222221  2223333355444 4467777765 567777776665444558


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCccc-----------CC-------CCCC-CCcCHhhhhcccc-ceeee--cCCcCcHHHH
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKD-----------FG-------RGDF-QELDQVEAVKPFS-KFAVK--AKDITEVPKC  150 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~-----------~~-------~~~~-q~~d~~~~~~~~~-k~~~~--~~~~~~~~~~  150 (482)
                      ..|..|...++||++|.-+-....           .+       .+.. ..+|...+.+.+. +|..+  +.+++++.+.
T Consensus        96 ~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~  175 (280)
T PRK11869         96 NHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEI  175 (280)
T ss_pred             HHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHH
Confidence            999999999999999975432110           00       0111 1246666666643 34443  4455665555


Q ss_pred             HHHHHHHhhcCCCceEEEEcCc
Q 011590          151 VAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       151 l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +.+|+    .. +||++|++-.
T Consensus       176 i~~Al----~~-~Gp~lIeV~~  192 (280)
T PRK11869        176 LKEAI----KH-KGLAIVDIFQ  192 (280)
T ss_pred             HHHHH----hC-CCCEEEEEEC
Confidence            55554    54 4899888754

>PRK06154 hypothetical protein; Provisional

Probab=91.67  E-value=0.67  Score=49.94  Aligned_cols=109  Identities=10%  Similarity=0.014  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CC------CCCC----CCcCHhhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FG------RGDF----QELDQVEA  130 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~------~~~~----q~~d~~~~  130 (482)
                      +.-+|.|.+.+. +|+.+|++--| |+.=....|.+|...++|+++|.-.-.... ..      ...+    ...|-..+
T Consensus       436 glpaaiGa~la~p~r~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~l  514 (565)
T PRK06154        436 GLGLAMGAKLARPDALVINLWGDA-AFGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAI  514 (565)
T ss_pred             HHHHHHHHHHhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHH
Confidence            444566666665 57888877555 344445789999999999999987654221 00      0000    12466778


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.....++++++++.+.+++|+.....  .+|+.|++..|-
T Consensus       515 A~a~G~~g~~V~~~~el~~al~~a~~~~~~--~~p~lIev~v~~  556 (565)
T PRK06154        515 ARALGGYGERVEDPEMLVPALLRALRKVKE--GTPALLEVITSE  556 (565)
T ss_pred             HHHCCCeEEEECCHHHHHHHHHHHHhhccC--CCeEEEEEEeCh
Confidence            888888889999999988888887764322  379999998653

>PTZ00410 NAD-dependent SIR2; Provisional

Probab=91.67  E-value=0.44  Score=47.48  Aligned_cols=43  Identities=21%  Similarity=0.165  Sum_probs=27.9

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCc
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCK  313 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~  313 (482)
                      ....+++||++|+||+++..+.....+.....++++|.||.++
T Consensus       199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~  241 (349)
T PTZ00410        199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLER  241 (349)
T ss_pred             HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECccc
Confidence            3456788999999999987543222111113457788787765

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=91.62  E-value=0.89  Score=49.11  Aligned_cols=107  Identities=14%  Similarity=0.153  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--C-CCC-CcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-DFQ-ELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~-~~q-~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--| |+.-.+..|..|...++|+++|.-+-....          .++  + .++ ..|.
T Consensus       428 glpaAiGa~la~p~r~Vv~i~GDG-~f~m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~  506 (574)
T PRK06466        428 GLPAAMGVKLAFPDQDVACVTGEG-SIQMNIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDF  506 (574)
T ss_pred             hHHHHHHHHHhCCCCeEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCH
Confidence            344577777765 67888877665 344446899999999999999988664321          011  0 112 2577


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+..+..++++++++.+.+++|++.    +.||+.|++..|-
T Consensus       507 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~----~~~p~lIev~i~~  549 (574)
T PRK06466        507 VKLAEAYGHVGIRITDLKDLKPKLEEAFAM----KDRLVFIDIYVDR  549 (574)
T ss_pred             HHHHHHCCCeEEEECCHHHHHHHHHHHHhc----CCCcEEEEEEeCC
Confidence            778888888899999988887777777742    3589999988764

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=91.58  E-value=1.3  Score=41.97  Aligned_cols=97  Identities=18%  Similarity=0.185  Sum_probs=56.0

Q ss_pred             CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEeCCCCccc-CC-C-------C----------CCCCcCHhhhhccc
Q 011590           75 GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKD-FG-R-------G----------DFQELDQVEAVKPF  134 (482)
Q Consensus        75 gk~~v~~~t~GpG~~-N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~-~-------~----------~~q~~d~~~~~~~~  134 (482)
                      +|+.+|++--| |+. -.+..+.++...++|+++|.-+-.... .+ .       +          .+...|...+.+.+
T Consensus        87 ~~~Vv~i~GDG-~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~  165 (237)
T cd02018          87 KKDVVVIGGDG-ATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATH  165 (237)
T ss_pred             CCcEEEEeCch-HHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHC
Confidence            45666665444 222 246677777789999999987554221 10 0       0          11234666677776


Q ss_pred             cceeee---cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          135 SKFAVK---AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       135 ~k~~~~---~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      .-...+   +.+++++    ..|++.|....+||++|++..|...
T Consensus       166 G~~~~~~~~v~~~~~l----~~al~~al~~~~GP~lI~v~i~c~~  206 (237)
T cd02018         166 GCVYVARLSPALKKHF----LKVVKEAISRTDGPTFIHAYTPCIT  206 (237)
T ss_pred             CCCEEEEEccCCHHHH----HHHHHHHHhcCCCCEEEEEeCCCCC
Confidence            444443   6665555    4555555441248999999887543

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]

Probab=91.53  E-value=1.7  Score=41.75  Aligned_cols=160  Identities=13%  Similarity=0.136  Sum_probs=92.9

Q ss_pred             cHHHHHHHHHHhcC---CCEEEecCCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590           15 DGNTLAAKSLSLFG---ATHMFGVVGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV   89 (482)
Q Consensus        15 ~~~~~l~~~L~~~G---v~~vFgvpG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~   89 (482)
                      +..+.+.+.|.++|   -+-|.-.-......=...+.+ -.=+++. ---||+.+.+|.|.+....+|-++  |.++=++
T Consensus         8 ~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~--tfa~F~s   85 (312)
T COG3958           8 SLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVS--TFAAFLS   85 (312)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceee--chHHHHH
Confidence            44555566655554   454544433211111111222 2234443 357999999999999987776554  3333222


Q ss_pred             -hhHHHHHHhh-hCCCcEEEEeCCCCcccCC-CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590           90 -HGLAGLSNGM-INTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC  166 (482)
Q Consensus        90 -N~~~ai~~A~-~~~~Pvl~i~g~~~~~~~~-~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv  166 (482)
                       -+.-=|.++- .++.||=++........-. -+.||.++-..++|.+.+....... +.+  ..+.++..+...+ ||+
T Consensus        86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~-D~v--~~~~i~~~~~~~~-GP~  161 (312)
T COG3958          86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPA-DAV--ETRAILDQIADYK-GPV  161 (312)
T ss_pred             HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccC-cHH--HHHHHHHHHHhcC-CCE
Confidence             2222333322 3667777776665544332 3458999889999999888776642 222  4566666666665 999


Q ss_pred             EEEcCcchhccccC
Q 011590          167 YLDLPTDVLHQTIS  180 (482)
Q Consensus       167 ~l~iP~dv~~~~~~  180 (482)
                      |+.+..+-....++
T Consensus       162 Y~Rl~R~~~p~~~~  175 (312)
T COG3958         162 YMRLGRGKVPVVVD  175 (312)
T ss_pred             EEEecCCCCCceec
Confidence            99999854333333

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=91.50  E-value=1.1  Score=48.41  Aligned_cols=107  Identities=15%  Similarity=0.109  Sum_probs=71.8

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-------CCC-----CCCCcCHhhh
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-------GRG-----DFQELDQVEA  130 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-------~~~-----~~q~~d~~~~  130 (482)
                      .-+|.|.+.+. +|+.++++--| |+.-....|.++...++|+++|.-.-.....       ..+     .+...|-..+
T Consensus       414 lpaAiGa~la~p~r~Vv~i~GDG-sf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~i  492 (575)
T TIGR02720       414 VPGAIAAKLNYPDRQVFNLAGDG-AFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKI  492 (575)
T ss_pred             HHHHHHHHHhCCCCcEEEEEccc-HHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHH
Confidence            34455655554 46777777655 3444467899999999999999765432210       001     1334577778


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.-...++++.+++.+.+++|++ . .. .+|+.|++..|-
T Consensus       493 A~a~G~~~~~v~~~~el~~al~~a~~-~-~~-~~p~liev~i~~  533 (575)
T TIGR02720       493 AEGVGAVGFRVNKIEQLPAVFEQAKA-I-KQ-GKPVLIDAKITG  533 (575)
T ss_pred             HHHCCCEEEEeCCHHHHHHHHHHHHh-h-CC-CCcEEEEEEeCC
Confidence            88887777889888888777777765 2 33 489999998865

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=91.42  E-value=0.95  Score=48.86  Aligned_cols=106  Identities=12%  Similarity=0.025  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC-C---CC-CCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR-G---DF-QELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~-~---~~-q~~d~  127 (482)
                      +.-+|.|.+.++ +|+.++++--|. +.-.+..|..|...++|+++|.-+-....         .+. .   .+ ...|.
T Consensus       429 glpaAiGaala~p~~~vv~i~GDGs-f~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~  507 (571)
T PRK07710        429 GLPAAIGAQLAKPDETVVAIVGDGG-FQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDF  507 (571)
T ss_pred             hHHHHHHHHHhCCCCcEEEEEcchH-HhhhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCH
Confidence            555677888765 678888876653 44445679999999999999987654311         010 0   11 23577


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-...++++.+++.+.+++|+    .. .||+.|++..|-
T Consensus       508 ~~~A~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~lieV~vd~  549 (571)
T PRK07710        508 VKLAEAYGIKGVRIDDELEAKEQLQHAI----EL-QEPVVIDCRVLQ  549 (571)
T ss_pred             HHHHHHCCCeEEEECCHHHHHHHHHHHH----hC-CCCEEEEEEecC
Confidence            7788888778889988877766666655    33 489999999874

>PRK11269 glyoxylate carboligase; Provisional

Probab=91.42  E-value=0.73  Score=49.95  Aligned_cols=109  Identities=10%  Similarity=0.004  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc------CC---C---C-CC------
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD------FG---R---G-DF------  122 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~------~~---~---~-~~------  122 (482)
                      +.-+|.|.+.+. +|+.+|++--| |+.-....|..|...++|+++|.-+-....      .+   .   . .+      
T Consensus       424 glpaAiGa~la~p~r~Vv~i~GDG-~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~  502 (591)
T PRK11269        424 TIPAALGVRAADPDRNVVALSGDY-DFQFLIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSP  502 (591)
T ss_pred             hhhhHHhhhhhCCCCcEEEEEccc-hhhcCHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccccc
Confidence            455677777765 57777776555 455566889999999999999987654210      00   0   0 01      


Q ss_pred             ----CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          123 ----QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       123 ----q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                          ...|-..+.+.+.-+..++++++++.+.+++|++..... .||+.|+|..|
T Consensus       503 ~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~-~gp~lieV~v~  556 (591)
T PRK11269        503 ELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEF-RVPVVVEVILE  556 (591)
T ss_pred             cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccC-CCcEEEEEEec
Confidence                125777788888888999999999888888887654333 48999999876

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=91.41  E-value=1.2  Score=44.59  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=61.9

Q ss_pred             EEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCC-C-CCCCCcCHhhhhccccceeeecCCcC--cHHHH
Q 011590           78 GILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQVEAVKPFSKFAVKAKDIT--EVPKC  150 (482)
Q Consensus        78 ~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~d~~~~~~~~~k~~~~~~~~~--~~~~~  150 (482)
                      .++++..|=|..+.   .-++..|-..++|+|+|.-+-...... . ......|.....+.+.-...+++..+  ++.+.
T Consensus       158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a  237 (341)
T CHL00149        158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREV  237 (341)
T ss_pred             CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHH
Confidence            35556667777762   235777888999999999765421100 0 01112355666676666667776555  55777


Q ss_pred             HHHHHHHhhcCCCceEEEEcCc
Q 011590          151 VAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       151 l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +.+|++.|..++ ||+.|++-.
T Consensus       238 ~~~A~~~ar~~~-gP~lIev~t  258 (341)
T CHL00149        238 AKEAVERARQGD-GPTLIEALT  258 (341)
T ss_pred             HHHHHHHHHhCC-CCEEEEEEE
Confidence            889999998865 899999864

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=91.30  E-value=4.6  Score=43.60  Aligned_cols=109  Identities=15%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--C-CC-CCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-DF-QELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~-~~-q~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--| |+.=...-|.+|...++|+++|.-+-....          .+.  . .+ ...|-
T Consensus       426 glpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~  504 (574)
T PRK07979        426 GLPAALGVKMALPEETVVCVTGDG-SIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDF  504 (574)
T ss_pred             HHHHHHHHHHhCCCCeEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCH
Confidence            445677777765 56777776555 344445789999999999999987654211          011  1 11 12577


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+..+..++++++++.+.+++|++....  .+|+.|+|..|-
T Consensus       505 ~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~--~~p~lIeV~i~~  549 (574)
T PRK07979        505 VRLAEAYGHVGIQISHPDELESKLSEALEQVRN--NRLVFVDVTVDG  549 (574)
T ss_pred             HHHHHHCCCEEEEECCHHHHHHHHHHHHhccCC--CCcEEEEEEECC
Confidence            788888888889999999988888888764322  489999999873

>PRK08322 acetolactate synthase; Reviewed

Probab=91.26  E-value=1.1  Score=48.19  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=71.4

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC---CCCCCcCHhhh
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---GDFQELDQVEA  130 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~---~~~q~~d~~~~  130 (482)
                      .-+|.|.+.+. +|+.++++--|. +.=.+..|.+|...++|+++|.-.-.....         +.   ..++..|...+
T Consensus       412 lpaaiGa~la~p~~~vv~i~GDGs-f~m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~l  490 (547)
T PRK08322        412 LPSAIAAKLVHPDRKVLAVCGDGG-FMMNSQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKY  490 (547)
T ss_pred             hHHHHHHHHhCCCCcEEEEEcchh-HhccHHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHH
Confidence            34567777664 677777776553 444457788899999999999875543210         11   11234577778


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+.+.-+..++++++++.+.+++|+.    . .||+.|++..|
T Consensus       491 A~a~G~~~~~v~~~~eL~~al~~a~~----~-~~p~lIev~v~  528 (547)
T PRK08322        491 AESYGAKGYRVESADDLLPTLEEALA----Q-PGVHVIDCPVD  528 (547)
T ss_pred             HHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEec
Confidence            88887788899988887777766653    3 48999999876

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=91.25  E-value=1.1  Score=48.09  Aligned_cols=105  Identities=15%  Similarity=0.121  Sum_probs=75.7

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------C-CC---CC-CCcCHh
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G-RG---DF-QELDQV  128 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~-~~---~~-q~~d~~  128 (482)
                      .-+|.|.+.+. +|+.++++--| |+.-.++.|.+|...++|+++|.-.-.....         + +.   .+ ...|..
T Consensus       407 lpaAiGa~la~p~~~vv~i~GDG-~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  485 (548)
T PRK08978        407 LPAAIGAQVARPDDTVICVSGDG-SFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFV  485 (548)
T ss_pred             HHHHHHHHHhCCCCcEEEEEccc-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHH
Confidence            55677777765 67888887665 4666678999999999999999876542210         0 10   11 235777


Q ss_pred             hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.+.-+..++++++++.+.+++|+.    . .+|..|+|..|-
T Consensus       486 ~la~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIeV~id~  526 (548)
T PRK08978        486 MLASAFGIPGQTITRKDQVEAALDTLLN----S-EGPYLLHVSIDE  526 (548)
T ss_pred             HHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEecC
Confidence            7888888888999998888777777764    2 389999999874

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=91.23  E-value=1.3  Score=47.90  Aligned_cols=105  Identities=22%  Similarity=0.294  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC----CCCCCcCHh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDFQELDQV  128 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~----~~~q~~d~~  128 (482)
                      +.-+|.|.+.+. +|+.+|++--| ++.-.+..+..|...++|+++|.-+-....         .+.    ..+...|..
T Consensus       442 ~l~~aiGa~la~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~  520 (578)
T PRK06112        442 GVPMAIGAKVARPGAPVICLVGDG-GFAHVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHA  520 (578)
T ss_pred             HHHHHHHHHhhCCCCcEEEEEcch-HHHhHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHH
Confidence            455677877765 56777777655 344456788889999999999987664210         000    011235666


Q ss_pred             hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+.+.+.-...++++++++.+.+++|+    .. .||+.|++..|
T Consensus       521 ~~A~a~G~~~~~v~~~~el~~al~~a~----~~-~gp~lIev~~~  560 (578)
T PRK06112        521 AIARACGCDGVRVEDPAELAQALAAAM----AA-PGPTLIEVITD  560 (578)
T ss_pred             HHHHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEcC
Confidence            777777667778888777666665554    33 48999999876

>PRK07064 hypothetical protein; Provisional

Probab=91.06  E-value=0.89  Score=48.75  Aligned_cols=103  Identities=13%  Similarity=0.146  Sum_probs=70.2

Q ss_pred             HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------C-C---CCCCCcCHhhh
Q 011590           65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G-R---GDFQELDQVEA  130 (482)
Q Consensus        65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~-~---~~~q~~d~~~~  130 (482)
                      -+|.|.+.+. +|+.++++--| |+.-.+..|.+|...++|+++|.-.-.....         + .   ..+...|-..+
T Consensus       412 paAiGa~lA~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~l  490 (544)
T PRK07064        412 AMAIGAALAGPGRKTVGLVGDG-GLMLNLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALL  490 (544)
T ss_pred             chhhhhhhhCcCCcEEEEEcch-HhhhhHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHH
Confidence            3455655554 56777777655 4555568999999999999999765432210         1 0   11234577778


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+.+.-...++++++++.+.+++|+    . ..||+.|++..|
T Consensus       491 A~a~G~~~~~v~~~~eL~~al~~a~----~-~~~p~lIeV~~~  528 (544)
T PRK07064        491 AASLGLPHWRVTSADDFEAVLREAL----A-KEGPVLVEVDML  528 (544)
T ss_pred             HHHCCCeEEEeCCHHHHHHHHHHHH----c-CCCCEEEEEEcc
Confidence            8888777789999888777777666    3 348999999986

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=91.05  E-value=10  Score=38.37  Aligned_cols=154  Identities=13%  Similarity=0.117  Sum_probs=89.6

Q ss_pred             CcHHHHHHHHHHhcCCC-EEEecCCcChHHHHHHHHhC-----CCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCCh
Q 011590           14 IDGNTLAAKSLSLFGAT-HMFGVVGIPVTSLANRAVQL-----GVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGP   86 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~-~vFgvpG~~~~~l~~al~~~-----~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~Gp   86 (482)
                      ++-.++|-..++...=+ .|+.-.|.....++. +.+.     .-.++..-.=..+.-+|.|.+.+. +|+.+|++--| 
T Consensus       172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~-~~~~~~~~~~~~f~~~GsMG~a~p~AlG~ala~p~r~Vv~i~GDG-  249 (361)
T TIGR03297       172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYE-LRDRIGQGHARDFLTVGSMGHASQIALGLALARPDQRVVCLDGDG-  249 (361)
T ss_pred             CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH-hhcccccCCCCceEeechhhhHHHHHHHHHHHCCCCCEEEEEChH-
Confidence            78888888888888764 444445544444433 2222     234443322223445677777653 46677766443 


Q ss_pred             hhHhhHHHHHHhhhCCC-cEEEEeCCCCccc-CCC-CC-CCCcCHhhhhcccc-ceeeecCCcCcHHHHHHHHHHHhhcC
Q 011590           87 GCVHGLAGLSNGMINTW-PIVMISGSCDQKD-FGR-GD-FQELDQVEAVKPFS-KFAVKAKDITEVPKCVAQVLERAVSG  161 (482)
Q Consensus        87 G~~N~~~ai~~A~~~~~-Pvl~i~g~~~~~~-~~~-~~-~q~~d~~~~~~~~~-k~~~~~~~~~~~~~~l~~A~~~a~~~  161 (482)
                      ++.-.+..+..+...+. |+++|.-+-.... .+. .. ....|...+++.+. .+..++.+++++.+.+++|.    ..
T Consensus       250 sflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a~----~~  325 (361)
T TIGR03297       250 AALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEVSTLEELETALTAAS----SA  325 (361)
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHH----hC
Confidence            22223467777766664 7888876654321 111 00 12356667777765 35678887777766665554    33


Q ss_pred             CCceEEEEcCcch
Q 011590          162 RPGGCYLDLPTDV  174 (482)
Q Consensus       162 ~~gPv~l~iP~dv  174 (482)
                       +||++|++..+.
T Consensus       326 -~gp~lIeV~v~~  337 (361)
T TIGR03297       326 -NGPRLIEVKVRP  337 (361)
T ss_pred             -CCcEEEEEEecC
Confidence             489999998765

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=90.94  E-value=0.86  Score=44.82  Aligned_cols=104  Identities=16%  Similarity=0.264  Sum_probs=65.8

Q ss_pred             HHHHh---HhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCCcCHhhhhccc--cce
Q 011590           68 SAYGY---LTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQELDQVEAVKPF--SKF  137 (482)
Q Consensus        68 ~g~ar---~tgk~~v~~~t~GpG~~N---~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~--~k~  137 (482)
                      .|.++   ..++..|+++..|=|++|   ..-++--|...+.|||+++-+-.....-...  .-.-+.....+.+  ...
T Consensus       111 ~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~  190 (300)
T PF00676_consen  111 AGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGI  190 (300)
T ss_dssp             HHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEE
T ss_pred             cchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccCCcEE
Confidence            36665   457788888888877755   3457888999999999999754221100000  0001122223333  334


Q ss_pred             eeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590          138 AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       138 ~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      ...-.++..+.+.+..|++.+..++ ||+.|++=.
T Consensus       191 ~VDG~D~~av~~a~~~A~~~~R~g~-gP~lie~~t  224 (300)
T PF00676_consen  191 RVDGNDVEAVYEAAKEAVEYARAGK-GPVLIEAVT  224 (300)
T ss_dssp             EEETTSHHHHHHHHHHHHHHHHTTT---EEEEEEE
T ss_pred             EECCEeHHHHHHHHHHHHHHHhcCC-CCEEEEEee
Confidence            4444678899999999999999987 999999864

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>COG1701 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.92  E-value=2.1  Score=38.93  Aligned_cols=134  Identities=19%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCC------------------CCC--CCC
Q 011590          203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK------------------GLL--PDT  262 (482)
Q Consensus       203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~------------------g~~--~~~  262 (482)
                      +..++++.++..|.-||+|||=+-+.+. .-..+++.+||+.+|+.+-...+-+                  .++  +.+
T Consensus        54 ~A~eA~raAaA~LlLAk~PVISVNGN~A-AL~p~e~v~La~~~~aklEVNLF~RteeRv~~I~e~L~~~Ga~~vLg~~~~  132 (256)
T COG1701          54 PALEAIRAAAAALLLAKHPVISVNGNVA-ALVPEEVVELAEATGAKLEVNLFYRTEERVRKIAEVLKEHGAKEVLGTDPD  132 (256)
T ss_pred             hHHHHHHHHHHHHHhccCCeEEEcCcee-eeCcHHHHHHHHHhCCceEEEeeccCHHHHHHHHHHHHhcCcceeecCCcc
Confidence            3456788888899999999999987765 4667899999999999876554321                  111  001


Q ss_pred             CCcccch------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHH
Q 011590          263 HPLAATA------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMI  336 (482)
Q Consensus       263 hp~~~G~------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L  336 (482)
                      +...-|.      ...+-+-.||+||+=   +.+-+..-  ..-.-+.++|.||.+|..-.....++.|+-++--+++.|
T Consensus       133 ~~~ip~l~s~R~~v~~~GIy~ADVVLvp---LEDGDRte--aLv~mGK~ViaIDLNPLSRTar~AsItIVDnivRA~p~l  207 (256)
T COG1701         133 AARIPGLESERGKVSEEGIYSADVVLVP---LEDGDRTE--ALVRMGKTVIAIDLNPLSRTARKASITIVDNIVRAVPNL  207 (256)
T ss_pred             cccCCCccccccccCcccceeccEEEEe---cCCCcHHH--HHHHhCCeEEEEeCCccccccccCceeeeHHHHHHHHHH
Confidence            1111110      011234468888764   22100000  001236789999999987766777999999988888888


Q ss_pred             HHhhhc
Q 011590          337 NKEIKD  342 (482)
Q Consensus       337 ~~~l~~  342 (482)
                      .+..++
T Consensus       208 i~~~~e  213 (256)
T COG1701         208 IEFVKE  213 (256)
T ss_pred             HHHHHH
Confidence            776653

>PLN02573 pyruvate decarboxylase

Probab=90.90  E-value=1.2  Score=48.19  Aligned_cols=106  Identities=10%  Similarity=0.051  Sum_probs=70.4

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-C------CCCCCCcCHhhhhcccc
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G------RGDFQELDQVEAVKPFS  135 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~------~~~~q~~d~~~~~~~~~  135 (482)
                      .-+|.|.+.+. +|+.++++--| |+.=.+.-|.+|...++|+++|.-.-..... .      ....+..|...+.+.+.
T Consensus       434 lpaaiGa~lA~p~r~vv~i~GDG-~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G  512 (578)
T PLN02573        434 VGATLGYAQAAPDKRVIACIGDG-SFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH  512 (578)
T ss_pred             hhHHHHHHHhCCCCceEEEEecc-HHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHhc
Confidence            34566666665 57777777555 3444457899999999999999876543211 0      01123356666777663


Q ss_pred             -----ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          136 -----KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       136 -----k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                           .+..++++++++.+.+++|+..   .+.||+.|++..|
T Consensus       513 ~~~g~~~~~~V~~~~eL~~al~~a~~~---~~~~p~lieV~v~  552 (578)
T PLN02573        513 NGEGKCWTAKVRTEEELIEAIATATGE---KKDCLCFIEVIVH  552 (578)
T ss_pred             CcCCceeEEEecCHHHHHHHHHHHHhh---CCCCcEEEEEEcC
Confidence                 5678898888887777776642   2358999999987

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=90.81  E-value=1.2  Score=48.03  Aligned_cols=106  Identities=9%  Similarity=0.177  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CCC----CC-CCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----DF-QELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~~----~~-q~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--|. +.-.+..|.+|...++|+++|.-+-.....         +..    .+ ...|.
T Consensus       424 ~lpaaiGa~la~~~~~vv~i~GDGs-f~~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~d~  502 (564)
T PRK08155        424 GLPAAIGAALANPERKVLCFSGDGS-LMMNIQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGKINF  502 (564)
T ss_pred             hhHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCeeeccCCCCCCH
Confidence            455677777765 577777776664 334467888999999999998876542210         000    11 23577


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-+..++++++++.+.+++|+.    . .+|+.|++..|-
T Consensus       503 ~~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIeV~~~~  544 (564)
T PRK08155        503 MQIAAGFGLETCDLNNEADPQAALQEAIN----R-PGPALIHVRIDA  544 (564)
T ss_pred             HHHHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence            77888887777888888887666666653    3 489999999874

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=90.80  E-value=1.1  Score=48.26  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC---CCC-CCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR---GDF-QELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~---~~~-q~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--|. +.-.+..|..|...++|+++|.-+-....          .+.   ..+ ...|.
T Consensus       426 ~lp~aiGa~la~p~~~vv~i~GDG~-f~~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~  504 (574)
T PRK06882        426 GLPAAIGVKFAHPEATVVCVTGDGS-IQMNIQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDF  504 (574)
T ss_pred             hhHHHHHHHhhcCCCcEEEEEcchh-hhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCH
Confidence            445677777665 467777766553 44445889999999999999987665221          011   011 12466


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-...++++.+++.+.+++|+..    +.+|+.|++..|-
T Consensus       505 ~~la~a~G~~~~~v~~~~eL~~al~~a~~~----~~~p~liev~i~~  547 (574)
T PRK06882        505 AKLAEAYGHVGIQIDTPDELEEKLTQAFSI----KDKLVFVDVNVDE  547 (574)
T ss_pred             HHHHHHCCCeEEEeCCHHHHHHHHHHHHhc----CCCcEEEEEEecC
Confidence            677788777788999888887777766642    3489999999874

>PRK08266 hypothetical protein; Provisional

Probab=90.78  E-value=1.4  Score=47.29  Aligned_cols=104  Identities=19%  Similarity=0.301  Sum_probs=72.5

Q ss_pred             HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------C-CC---CCCCCcCHhhh
Q 011590           65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------F-GR---GDFQELDQVEA  130 (482)
Q Consensus        65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~-~~---~~~q~~d~~~~  130 (482)
                      -+|.|.+... +|+.+|++--| |+.-....|..|...++|+++|.-+-....         . ++   ..+...|...+
T Consensus       409 p~aiGa~la~p~~~vv~v~GDG-~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~l  487 (542)
T PRK08266        409 PTALGAKVANPDRPVVSITGDG-GFMFGVQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKL  487 (542)
T ss_pred             HHHHHHHHhCCCCcEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHH
Confidence            4577777665 67888887766 555567899999999999999876553211         0 11   11234577788


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.-...++++++++.+.+++|+    .. .||+.|++..|-
T Consensus       488 a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~i~~  526 (542)
T PRK08266        488 AESFGVAAFRVDSPEELRAALEAAL----AH-GGPVLIEVPVPR  526 (542)
T ss_pred             HHHcCCeEEEeCCHHHHHHHHHHHH----hC-CCcEEEEEEecC
Confidence            8888888888988877766665554    33 389999998764

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=90.77  E-value=0.69  Score=49.90  Aligned_cols=106  Identities=12%  Similarity=0.080  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC----CCCCCcCHh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDFQELDQV  128 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~----~~~q~~d~~  128 (482)
                      +.-+|.|.+.+. +|+.++++--|. +.=...-|.+|...++|++++.-+-.....         +.    -.+...|..
T Consensus       427 ~lp~aiGa~lA~p~~~vv~i~GDG~-f~~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~  505 (570)
T PRK06725        427 GFPAAIGAQLAKEEELVICIAGDAS-FQMNIQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFV  505 (570)
T ss_pred             hhhHHHhhHhhcCCCeEEEEEecch-hhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHH
Confidence            444566666654 578887776664 333347888999999999999876542210         00    012345777


Q ss_pred             hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.+..+..++++++++.+.+++|+.    . .||+.|+++.|-
T Consensus       506 ~~a~a~G~~~~~v~~~~~l~~al~~a~~----~-~~p~liev~id~  546 (570)
T PRK06725        506 KVAEAYGVKGLRATNSTEAKQVMLEAFA----H-EGPVVVDFCVEE  546 (570)
T ss_pred             HHHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence            8888888888899888887666666653    3 489999999874

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=90.76  E-value=1.1  Score=48.15  Aligned_cols=106  Identities=19%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------C-C--C-CCC-CcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G-R--G-DFQ-ELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~-~--~-~~q-~~d~  127 (482)
                      +.-+|.|.+.+. .|+.+|++--|. +.=.+..|..|...++|++++.-+-.....         + .  . .+. ..|.
T Consensus       419 ~l~~aiGa~la~p~~~vv~i~GDG~-f~m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~  497 (563)
T PRK08527        419 GLPAALGAKLAVPDKVVINFTGDGS-ILMNIQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDF  497 (563)
T ss_pred             hHHHHHHHHHhCCCCcEEEEecCch-hcccHHHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCH
Confidence            445677877776 577777775553 333346788899999999988876542210         0 0  0 121 3577


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-+.+++++++++.+.+++|+.    . .||+.|++..|-
T Consensus       498 ~~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lieV~v~~  539 (563)
T PRK08527        498 VKLAESFGGIGFRVTTKEEFDKALKEALE----S-DKVALIDVKIDR  539 (563)
T ss_pred             HHHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEECC
Confidence            77888887788899998888777777653    2 489999999874

>PLN02470 acetolactate synthase

Probab=90.76  E-value=1.3  Score=48.09  Aligned_cols=106  Identities=11%  Similarity=0.105  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C--------CC---CC-CC-----
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F--------GR---GD-FQ-----  123 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~---~~-~q-----  123 (482)
                      +.-+|.|.+.+. +|+.++++--| |+.=....|.+|...++|+++|.-.-.... +        +.   +. +.     
T Consensus       431 glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~  509 (585)
T PLN02470        431 GLPAAIGAAAANPDAIVVDIDGDG-SFIMNIQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAE  509 (585)
T ss_pred             hHHHHHHHHHhCCCCcEEEEEccc-hhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCccccc
Confidence            556678888776 67888777655 344445899999999999999887654310 0        00   00 00     


Q ss_pred             ---CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          124 ---ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       124 ---~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                         ..|...+.+.+.-...++++++++.+.+++|+.    . .+|+.|+|..|-
T Consensus       510 ~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lieV~i~~  558 (585)
T PLN02470        510 AEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLD----T-PGPYLLDVIVPH  558 (585)
T ss_pred             cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence               147777888887778899998888777777764    2 489999999874

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=90.71  E-value=2.2  Score=40.31  Aligned_cols=95  Identities=13%  Similarity=0.073  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--CCCC----------------------CCCcCHhhh
Q 011590           75 GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--GRGD----------------------FQELDQVEA  130 (482)
Q Consensus        75 gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--~~~~----------------------~q~~d~~~~  130 (482)
                      .|+.++++--|--..-.+..|..|...++|+++|.-+-.....  +...                      ....|...+
T Consensus        80 ~r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~i  159 (235)
T cd03376          80 DITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLI  159 (235)
T ss_pred             CCeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHH
Confidence            5677777655532234468899999999999999876543220  0000                      011455556


Q ss_pred             hcccc-cee--eecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFS-KFA--VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~-k~~--~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+- ++.  .++.+++++.+.+++|++    . +||+.|++..+=
T Consensus       160 A~a~G~~~~~~~~v~~~~el~~al~~a~~----~-~gP~lIev~~~C  201 (235)
T cd03376         160 MAAHNIPYVATASVAYPEDLYKKVKKALS----I-EGPAYIHILSPC  201 (235)
T ss_pred             HHHcCCcEEEEEcCCCHHHHHHHHHHHHh----C-CCCEEEEEECCC
Confidence            66653 332  357777776666666553    3 489999887663

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=90.67  E-value=4.1  Score=44.07  Aligned_cols=157  Identities=7%  Similarity=0.017  Sum_probs=93.2

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCc-ChHHHHHHHHh-CCCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCChh
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGI-PVTSLANRAVQ-LGVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPG   87 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~-~~~~l~~al~~-~~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~GpG   87 (482)
                      ++..+++-+.-+...=+.++..=++ ........+.- ...+++....   =..+.-+|.|.+.+. +|+.+|++--|. 
T Consensus       381 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~-  459 (579)
T TIGR03457       381 LHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGA-  459 (579)
T ss_pred             cCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchH-
Confidence            4444443333333443455544333 32333333332 3345553211   111334677777765 577777775553 


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC---C-CCCC-cCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---G-DFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQ  153 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~---~-~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~  153 (482)
                      +.=....|.+|...++|+++|.-+-....         .+.   + .++. .|...+.+.+.-+..++++++++.+.+++
T Consensus       460 f~m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~  539 (579)
T TIGR03457       460 WGMSMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALKK  539 (579)
T ss_pred             HhccHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHH
Confidence            44445899999999999999887554321         010   0 1223 47778888888888899999998888888


Q ss_pred             HHHHhhcCCCceEEEEcCcc
Q 011590          154 VLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       154 A~~~a~~~~~gPv~l~iP~d  173 (482)
                      |++...  ..+|+.|++..|
T Consensus       540 a~~~~~--~~~p~lieV~v~  557 (579)
T TIGR03457       540 AIAAQA--EGKTTVIEIVCT  557 (579)
T ss_pred             HHhhCC--CCCcEEEEEEeC
Confidence            875432  237899999887

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK07524 hypothetical protein; Provisional

Probab=90.54  E-value=1.4  Score=47.15  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C-------C-C---CCCCCcCHhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F-------G-R---GDFQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~-------~-~---~~~q~~d~~~  129 (482)
                      +.-+|.|.+.+. +|+.++++--|.-..| +..|..|...++|++++.-+-.... .       + .   ..+...|...
T Consensus       412 ~lp~aiGa~lA~p~~~vv~i~GDG~f~~~-~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~  490 (535)
T PRK07524        412 GLPAAIGAALGAPERPVVCLVGDGGLQFT-LPELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPVGVDPYTPDFIA  490 (535)
T ss_pred             hHHHHHHHHHhCCCCcEEEEEcchHHhhh-HHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCccccCCCCCCHHH
Confidence            344577777764 6788888766643333 4668899999999998887653221 0       1 0   0123457778


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      +.+.+.-+..++++++++.+.+++|+    .. .||+.|++..|-+.
T Consensus       491 ~A~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~~~~~~  532 (535)
T PRK07524        491 LARAFGCAAERVADLEQLQAALRAAF----AR-PGPTLIEVDQACWF  532 (535)
T ss_pred             HHHHCCCcEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEECCccc
Confidence            88888777888888777666665555    43 48999999877543

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=90.51  E-value=2  Score=41.87  Aligned_cols=106  Identities=15%  Similarity=0.164  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcc-----------cCCC-------CCC-
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK-----------DFGR-------GDF-  122 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~-----------~~~~-------~~~-  122 (482)
                      +.-+|.|...+. .++.++++--|-++.-.++.+..|...++|+++|.-+-...           ..+.       +.. 
T Consensus        74 alpaAiGaklA~Pd~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~  153 (286)
T PRK11867         74 ALAIATGLKLANPDLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIE  153 (286)
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCC
Confidence            344567777765 56777777666556667788999999999999987643211           0110       000 


Q ss_pred             CCcCHhhhhccccc-eee--ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          123 QELDQVEAVKPFSK-FAV--KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       123 q~~d~~~~~~~~~k-~~~--~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ..+|...+...+.- +..  .+.+++++.    ++++.|+.. +||++|++-.+
T Consensus       154 ~~~d~~~lA~a~Ga~~va~~~~~~~~el~----~al~~Al~~-~Gp~lIev~~~  202 (286)
T PRK11867        154 PPFNPVELALGAGATFVARGFDSDVKQLT----ELIKAAINH-KGFSFVEILQP  202 (286)
T ss_pred             CCCCHHHHHHHCCCcEEEEecCCCHHHHH----HHHHHHHhC-CCCEEEEEeCC
Confidence            12455655555432 222  234455554    455555454 49999998766

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=90.48  E-value=1.4  Score=47.66  Aligned_cols=105  Identities=15%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CC-C--C-CC--CCcCH
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FG-R--G-DF--QELDQ  127 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~-~--~-~~--q~~d~  127 (482)
                      .-+|.|.+.+. +|+.++++--| |+.=....|..|...++|++++.-.-....         .+ +  + .+  ...|.
T Consensus       436 lpaaiGaala~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~  514 (585)
T CHL00099        436 LPAAIGAQIAHPNELVICISGDA-SFQMNLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDF  514 (585)
T ss_pred             HHHHHHHHHhCCCCeEEEEEcch-hhhhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCH
Confidence            34567777765 67777777555 344445788999999999999987654211         00 0  0 01  23577


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-+..++++++++.+.+++|+.    . .||+.|++..|-
T Consensus       515 ~~la~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~v~~  556 (585)
T CHL00099        515 VKLAEAYGIKGLRIKSRKDLKSSLKEALD----Y-DGPVLIDCQVIE  556 (585)
T ss_pred             HHHHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEECC
Confidence            77888888888899988887777766664    3 389999999873

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=90.46  E-value=1.3  Score=47.58  Aligned_cols=103  Identities=15%  Similarity=0.191  Sum_probs=69.7

Q ss_pred             HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C---------CC---CCCCCcCHhhhh
Q 011590           66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F---------GR---GDFQELDQVEAV  131 (482)
Q Consensus        66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~---------~~---~~~q~~d~~~~~  131 (482)
                      +|.|.+... +|+.+|++--| ++.-....|..|...++|+++|.-+-.... .         +.   -.+...|...+.
T Consensus       423 aaiGa~la~p~~~vv~i~GDG-sf~~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a  501 (557)
T PRK08199        423 AAIAAKLLFPERTVVAFAGDG-CFLMNGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALA  501 (557)
T ss_pred             HHHHHHHhCCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHH
Confidence            466666654 57777777555 344455888899999999999987664221 0         00   012235677788


Q ss_pred             ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +.+.-+..++++++++.+.+++|+    .. .||+.|++..|-
T Consensus       502 ~a~G~~~~~v~~~~el~~al~~a~----~~-~gp~li~v~~~~  539 (557)
T PRK08199        502 RAYGGHGETVERTEDFAPAFERAL----AS-GKPALIEIRIDP  539 (557)
T ss_pred             HHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEeCH
Confidence            888777888988887766666665    33 489999998864

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=90.38  E-value=1.3  Score=45.72  Aligned_cols=94  Identities=18%  Similarity=0.210  Sum_probs=60.7

Q ss_pred             cEEEEEcCChhhHhhH---HHHHHhhhCCCcEEEEeCCCCcccCCCC-CCC--CcCHhhhhccccceeeecCCc--CcHH
Q 011590           77 PGILLTVSGPGCVHGL---AGLSNGMINTWPIVMISGSCDQKDFGRG-DFQ--ELDQVEAVKPFSKFAVKAKDI--TEVP  148 (482)
Q Consensus        77 ~~v~~~t~GpG~~N~~---~ai~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~~k~~~~~~~~--~~~~  148 (482)
                      ..++++..|=|.+|.-   -++..|...++|+|++.-+.... ++.. ..|  ..|.....+.+.-...+++..  .++.
T Consensus       223 ~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~ya-ig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~  301 (433)
T PLN02374        223 DDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVR  301 (433)
T ss_pred             CCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEe-ecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHH
Confidence            3456666677776633   37888999999999999654211 1110 011  224555556655555566543  4667


Q ss_pred             HHHHHHHHHhhcCCCceEEEEcCc
Q 011590          149 KCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       149 ~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +.+.+|++.|..++ ||+.|++-.
T Consensus       302 ~a~~~A~~~Ar~g~-gP~LIe~~t  324 (433)
T PLN02374        302 EVAKEAIERARRGE-GPTLVECET  324 (433)
T ss_pred             HHHHHHHHHHHHcC-CCEEEEEEE
Confidence            78889999999875 999999754

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=90.32  E-value=0.87  Score=49.01  Aligned_cols=106  Identities=17%  Similarity=0.089  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--C-C-CCCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-D-FQELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~-~-~q~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--|. +.-....|.+|...++|+++|.-+-....          .++  . . ....|.
T Consensus       417 ~l~aaiGa~la~~~~~vv~~~GDG~-f~~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~  495 (558)
T TIGR00118       417 GLPAAIGAKVAKPESTVICITGDGS-FQMNLQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDF  495 (558)
T ss_pred             hhhHHHhhhhhCCCCcEEEEEcchH-HhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCH
Confidence            445778887776 577777765553 44445689999999999999987664321          000  0 1 123677


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-+..++++++++.+.+++|+    .. .||+.|++..|-
T Consensus       496 ~~~a~a~G~~~~~v~~~~~l~~al~~a~----~~-~~p~liev~~~~  537 (558)
T TIGR00118       496 VKLAEAYGIKGIRIEKPEELDEKLKEAL----SS-NEPVLLDVVVDK  537 (558)
T ss_pred             HHHHHHCCCeEEEECCHHHHHHHHHHHH----hC-CCCEEEEEEeCC
Confidence            7788888777788888777766666555    33 489999998874

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)

Probab=90.30  E-value=1.1  Score=45.70  Aligned_cols=111  Identities=19%  Similarity=0.170  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcc-cc--hHHHHhhhcCC
Q 011590          205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-AT--AARSLAIGQCD  279 (482)
Q Consensus       205 ~~~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~-~G--~~~~~~l~~aD  279 (482)
                      +++++.+++.|++.+  +..++.|.... .+....+.+|++.+|.+.+.....-........+. .+  .....=++++|
T Consensus        72 deAl~~ia~~l~~~~~~~i~~~~~~~~~-~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad  150 (386)
T cd02768          72 EEALKTVAEGLKAVKGDKIGGIAGPRAD-LESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEAD  150 (386)
T ss_pred             HHHHHHHHHHHHhcChhheEEEecCCCC-HHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCC
Confidence            567888888888876  56666665432 23345688999999988653321111000000000 00  01123357999


Q ss_pred             EEEEecCccCcccccC--CC-CCCC-CCCcEEEEeCCchhh
Q 011590          280 VALVVGARLNWLLHFG--EP-PKWS-KDVKFVLVDVCKEEI  316 (482)
Q Consensus       280 lvl~iG~~~~~~~~~g--~~-~~~~-~~~~ii~id~d~~~~  316 (482)
                      +||++|+++.+.....  +. .... .++++|.||+.....
T Consensus       151 ~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~  191 (386)
T cd02768         151 AVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL  191 (386)
T ss_pred             EEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence            9999999875422111  11 1112 378999999866544

The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=90.19  E-value=1.6  Score=46.70  Aligned_cols=104  Identities=12%  Similarity=-0.001  Sum_probs=69.0

Q ss_pred             HHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC--------CCCCCCcCHhhhhccccce
Q 011590           66 AASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--------RGDFQELDQVEAVKPFSKF  137 (482)
Q Consensus        66 ~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--------~~~~q~~d~~~~~~~~~k~  137 (482)
                      +|.|.+.+..++.++++--| |+.=.+.-|.+|...++|+++|.-.-.....-        ...+...|-..+.+.+..+
T Consensus       411 aaiGa~lA~~~r~v~i~GDG-~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~  489 (535)
T TIGR03394       411 AGIGAQCTSGKRILTLVGDG-AFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGMGGD  489 (535)
T ss_pred             HHHHHHhCCCCCeEEEEeCh-HHHhHHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHcCCC
Confidence            45555556555566654333 34444589999999999999998765432110        1122335667788888888


Q ss_pred             eeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          138 AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       138 ~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..++++++++.+.+++|++    .+.+|+.|++..|-
T Consensus       490 ~~~v~~~~eL~~al~~a~~----~~~~p~lIev~i~~  522 (535)
T TIGR03394       490 GVRVRTRAELAAALDKAFA----TRGRFQLIEAMLPR  522 (535)
T ss_pred             ceEeCCHHHHHHHHHHHHh----cCCCeEEEEEECCc
Confidence            8999998888777777764    23358899998763

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK05858 hypothetical protein; Provisional

Probab=90.00  E-value=1.5  Score=47.09  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CCC---CC-CCcCHhhhh
Q 011590           66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG---DF-QELDQVEAV  131 (482)
Q Consensus        66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~~---~~-q~~d~~~~~  131 (482)
                      +|.|.+.+. +|+.++++--| |+.-.+.-|.+|...++|+++|.-.-.....         +..   .+ ...|...+.
T Consensus       415 ~aiGa~la~p~r~vv~i~GDG-~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA  493 (542)
T PRK05858        415 YALAARLARPSRQVVLLQGDG-AFGFSLMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVV  493 (542)
T ss_pred             HHHHHHHhCCCCcEEEEEcCc-hhcCcHHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHH
Confidence            444555443 57777777655 4555567888888999999999876532210         111   11 346777788


Q ss_pred             ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      +.+.-+..++++++++.+.+++|++    . .+|+.|++..|
T Consensus       494 ~a~G~~~~~v~~~~eL~~al~~a~~----~-~~p~lIev~~~  530 (542)
T PRK05858        494 RALGGHGELVTVPAELGPALERAFA----S-GVPYLVNVLTD  530 (542)
T ss_pred             HHCCCeEEEeCCHHHHHHHHHHHHh----C-CCcEEEEEEEC
Confidence            8887888899999998888887774    2 48999999986

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=89.98  E-value=24  Score=37.58  Aligned_cols=153  Identities=14%  Similarity=0.110  Sum_probs=95.5

Q ss_pred             cCCcHHHHHHHHHHhcCC--CEEEec----CCc-ChHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEc
Q 011590           12 AQIDGNTLAAKSLSLFGA--THMFGV----VGI-PVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTV   83 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv--~~vFgv----pG~-~~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t   83 (482)
                      ...+..+++.+.|.+..-  +.++++    |++ ....|-..+   --+|+ ..--||.|+-+|.|.|...-||.|++-+
T Consensus       314 ~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~f---P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYS  390 (627)
T COG1154         314 SAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKF---PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYS  390 (627)
T ss_pred             CCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhC---chhheehhhhHHHHHHHHHHHHhCCCCCEEEEec
Confidence            445677888888777653  345444    222 333333322   12344 2357999999999999999999988865


Q ss_pred             CChhhHhhH-HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecC-CcCcHHHHHHHHHHHhhcC
Q 011590           84 SGPGCVHGL-AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK-DITEVPKCVAQVLERAVSG  161 (482)
Q Consensus        84 ~GpG~~N~~-~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~-~~~~~~~~l~~A~~~a~~~  161 (482)
                      +=  +.=+. -=++.-..++.||++..-....-......||..=-+++++.+-....... +.+++    ++.+.+|...
T Consensus       391 TF--LQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el----~~ml~ta~~~  464 (627)
T COG1154         391 TF--LQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEEL----RQMLYTALAQ  464 (627)
T ss_pred             HH--HHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHH----HHHHHHHHhc
Confidence            31  11122 23455667899999987533222222234666444788999988887764 33444    4555555565


Q ss_pred             CCceEEEEcCcc
Q 011590          162 RPGGCYLDLPTD  173 (482)
Q Consensus       162 ~~gPv~l~iP~d  173 (482)
                      .-||+.|.+|..
T Consensus       465 ~~gP~AiRyPrg  476 (627)
T COG1154         465 DDGPVAIRYPRG  476 (627)
T ss_pred             CCCCeEEEecCC
Confidence            558999999975

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=89.94  E-value=0.27  Score=52.97  Aligned_cols=53  Identities=17%  Similarity=0.087  Sum_probs=40.7

Q ss_pred             CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccC--ChHHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGF--SAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~--~~~eL~T~~r~~l~i~~~  482 (482)
                      ..|..|.++|.|+|.|+|.    .++.|++++|||+++-  ....|-.+..+++|+++|
T Consensus       111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~I  169 (581)
T PRK12315        111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIII  169 (581)
T ss_pred             CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEE
Confidence            3466677899999988883    3578999999999986  333577777888998765

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=89.93  E-value=0.72  Score=49.76  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             CcEEecCchH---HHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----CC--C---
Q 011590           52 VRFIAFHNEQ---SAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----FG--R---  119 (482)
Q Consensus        52 i~~v~~~~E~---~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----~~--~---  119 (482)
                      .+++....-.   .+.-+|.|.+.+.+|+.+|++--| ++.-.++.+.+|...++|+++|.-+-....    ..  .   
T Consensus       416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~GDG-sf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~  494 (568)
T PRK07449        416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALIGDL-SFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEP  494 (568)
T ss_pred             ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEechH-HhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcc
Confidence            5555443321   245567888877778887777544 333335789999999999999987654311    00  0   


Q ss_pred             ------CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          120 ------GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       120 ------~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                            +.....|-..+.+.+.-...++++++++.+.+++|+    . +++|+.|++..|
T Consensus       495 ~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~----~-~~~p~lIev~id  549 (568)
T PRK07449        495 VFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADAL----P-TPGLTVIEVKTN  549 (568)
T ss_pred             hhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh----c-CCCCEEEEEeCC
Confidence                  001224556666666666778888777766666654    4 358999999876

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=89.86  E-value=1.7  Score=46.74  Aligned_cols=103  Identities=14%  Similarity=0.175  Sum_probs=71.2

Q ss_pred             HHHHHHhHh--CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCCCC----CCCcCHhhhh
Q 011590           66 AASAYGYLT--GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGRGD----FQELDQVEAV  131 (482)
Q Consensus        66 ~A~g~ar~t--gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~~~----~q~~d~~~~~  131 (482)
                      +|.|.+.+.  +|+.++++--| ++.-.+..|..|...++|+++|.-+-....        .+...    +...|...+.
T Consensus       404 aaiGa~la~p~~~~Vv~i~GDG-sf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA  482 (549)
T PRK06457        404 GSVGASFAVENKRQVISFVGDG-GFTMTMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIA  482 (549)
T ss_pred             HHHHHHhcCCCCCeEEEEEccc-HHhhhHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHH
Confidence            567777665  57888887665 455556889999999999999887654321        01111    1134666777


Q ss_pred             ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +.+.-...++++++++...+++|+.     ..||+.|+|-.|-
T Consensus       483 ~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~i~~  520 (549)
T PRK06457        483 ESIGFKGFRLEEPKEAEEIIEEFLN-----TKGPAVLDAIVDP  520 (549)
T ss_pred             HHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeCc
Confidence            7777777889988888777777663     2489999988874

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=89.73  E-value=1.6  Score=47.11  Aligned_cols=104  Identities=15%  Similarity=0.210  Sum_probs=73.9

Q ss_pred             HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCCC----CC-CCcCHhh
Q 011590           65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGRG----DF-QELDQVE  129 (482)
Q Consensus        65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~~----~~-q~~d~~~  129 (482)
                      -+|.|.+.+. +|+.++++--| |+.=....|..|...++|+++|.-+-....         .+..    .+ ...|...
T Consensus       428 paAiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~  506 (572)
T PRK06456        428 PAAMGAKLARPDKVVVDLDGDG-SFLMTGTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVK  506 (572)
T ss_pred             HHHHHHHHhCCCCeEEEEEccc-hHhcchHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHH
Confidence            4677877776 57777777665 355556899999999999999987664321         0110    12 2367778


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +.+.+.-+..++++++++.+.+.+|+.    . .||..|++..|-
T Consensus       507 ~A~a~G~~~~~v~~~~eL~~al~~a~~----~-~~p~lIev~v~~  546 (572)
T PRK06456        507 LAEAFGALGFNVTTYEDIEKSLKSAIK----E-DIPAVIRVPVDK  546 (572)
T ss_pred             HHHHCCCeeEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCc
Confidence            888888888899988887777766653    3 489999999874

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=89.59  E-value=2  Score=46.24  Aligned_cols=149  Identities=11%  Similarity=0.048  Sum_probs=91.4

Q ss_pred             HHHHHHhcCCCEEEecCCcChHH-HHHHHH-hCCCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHH
Q 011590           20 AAKSLSLFGATHMFGVVGIPVTS-LANRAV-QLGVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        20 l~~~L~~~Gv~~vFgvpG~~~~~-l~~al~-~~~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~   93 (482)
                      +++.|.+.-=+.++..=++.... ....+. ...-+++....   =..+.-+|.|.+.++ +|+.++++--| |+.=...
T Consensus       371 ~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~  449 (561)
T PRK06048        371 VIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDG-SFQMNSQ  449 (561)
T ss_pred             HHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCc-hhhccHH
Confidence            45555543224444333332222 222332 23345554322   122555677877775 57888887766 4555567


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccC----------CCC---CC-CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhh
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDF----------GRG---DF-QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV  159 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~----------~~~---~~-q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~  159 (482)
                      .|.+|...++|+++|.-.-.....          +..   .+ ...|...+.+.+.-+..++++++++.+.|++|+.   
T Consensus       450 eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~---  526 (561)
T PRK06048        450 ELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVA---  526 (561)
T ss_pred             HHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh---
Confidence            899999999999999876542210          010   11 2357777888887788899998888777777763   


Q ss_pred             cCCCceEEEEcCcch
Q 011590          160 SGRPGGCYLDLPTDV  174 (482)
Q Consensus       160 ~~~~gPv~l~iP~dv  174 (482)
                       . .||+.|++..|-
T Consensus       527 -~-~~p~liev~~~~  539 (561)
T PRK06048        527 -S-DRPVVIDFIVEC  539 (561)
T ss_pred             -C-CCCEEEEEEecC
Confidence             2 389999998764

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=89.52  E-value=1.7  Score=46.76  Aligned_cols=105  Identities=13%  Similarity=0.049  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-------CCC----CC-CCcCHhhh
Q 011590           63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-------GRG----DF-QELDQVEA  130 (482)
Q Consensus        63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-------~~~----~~-q~~d~~~~  130 (482)
                      +.-+|.|.+.+.+|+.++++--|. +.=...-|.+|...++|+++|.-.-.....       +..    .+ ...|-..+
T Consensus       422 ~lpaaiGaala~~~~vv~i~GDGs-f~m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~l  500 (554)
T TIGR03254       422 GMGYAIAAAVETGKPVVALEGDSA-FGFSGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKM  500 (554)
T ss_pred             hHHHHHHHHhcCCCcEEEEEcCch-hcccHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHH
Confidence            334566766667788887775553 333346788999999999998876542111       100    11 23466677


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+.+.-...++++++++.+.+++|+    .. .||+.|++..|
T Consensus       501 a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~lIev~id  538 (554)
T TIGR03254       501 MKAFGGVGYNVTTPDELKAALNEAL----AS-GKPTLINAVID  538 (554)
T ss_pred             HHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEEC
Confidence            7888777889998888777776665    32 48999999876

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=89.52  E-value=1.5  Score=47.66  Aligned_cols=106  Identities=8%  Similarity=0.065  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC---CC-CC-CcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---GD-FQ-ELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~---~~-~q-~~d~  127 (482)
                      +.-+|.|.+.+. .|+.++++--| |+.=...-|..|...++|++++.-+-....         .+.   .. +. ..|.
T Consensus       435 glpaaiGa~lA~p~r~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~  513 (595)
T PRK09107        435 GLPAALGVQIAHPDALVIDIAGDA-SIQMCIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDF  513 (595)
T ss_pred             hHHHHHHHHHhCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCH
Confidence            344566666665 46777776554 344444789999999999999987664321         011   01 11 2467


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-+..++++++++.+.+++|+.    . .+|+.|+++.|-
T Consensus       514 ~~lA~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIeV~i~~  555 (595)
T PRK09107        514 VKLAEAYGAVGIRCEKPGDLDDAIQEMID----V-DKPVIFDCRVAN  555 (595)
T ss_pred             HHHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEecC
Confidence            77888888888999998888777776664    2 489999999874

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=89.47  E-value=1.8  Score=46.93  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=71.4

Q ss_pred             HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhC-----CCcEEEEeCCCCccc---------CCCC------CCCC
Q 011590           66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMIN-----TWPIVMISGSCDQKD---------FGRG------DFQE  124 (482)
Q Consensus        66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~-----~~Pvl~i~g~~~~~~---------~~~~------~~q~  124 (482)
                      +|.|.+.+. +|+.++++--|.=..|.+.-|.+|...     ++|+++|.-.-....         .+..      .+..
T Consensus       423 aaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~  502 (597)
T PRK08273        423 YAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPD  502 (597)
T ss_pred             HHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCC
Confidence            566666665 578887775553223334678888888     899999887654220         1111      1234


Q ss_pred             cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       125 ~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .|...+.+.+.-...++++.+++.+.+++|+.     ..||+.|++..|-
T Consensus       503 ~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIeV~~~~  547 (597)
T PRK08273        503 VPYARFAELLGLKGIRVDDPEQLGAAWDEALA-----ADRPVVLEVKTDP  547 (597)
T ss_pred             CCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence            56778888888888899998888777777764     2489999998864

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=89.41  E-value=1.6  Score=46.71  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCCC-----CCCCcCHh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGRG-----DFQELDQV  128 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~~-----~~q~~d~~  128 (482)
                      +.-+|.|.+.+. +|+.+|++--|. +.-.+..|..|...++|++++.-+-....        .+.+     .+...|..
T Consensus       412 ~lp~aiGa~la~p~~~vv~i~GDG~-f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  490 (530)
T PRK07092        412 GLPAAVGVALAQPGRRVIGLIGDGS-AMYSIQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFV  490 (530)
T ss_pred             hHHHHHHHHHhCCCCeEEEEEeCch-HhhhHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHH
Confidence            334677777665 577777776553 44456899999999999999886554211        0111     12345677


Q ss_pred             hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+.+.+.-...++++++++.+.+++|+    .. .||+.|++..|
T Consensus       491 ~~a~~~G~~~~~v~~~~~l~~al~~a~----~~-~~p~liev~~d  530 (530)
T PRK07092        491 ALARGYGCEAVRVSDAAELADALARAL----AA-DGPVLVEVEVA  530 (530)
T ss_pred             HHHHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEcC
Confidence            788887777778887766655555554    43 48999998765

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=89.38  E-value=1.6  Score=43.21  Aligned_cols=108  Identities=15%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             HHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCC--CCCCcCHhhhhcccccee
Q 011590           67 ASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRG--DFQELDQVEAVKPFSKFA  138 (482)
Q Consensus        67 A~g~ar~t---gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~~~~~~~~k~~  138 (482)
                      |.|.+++.   +...++++..|=|..+.   ..++..|...++|+|+|.-+-........  .....|.....+.+.-..
T Consensus       119 AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~  198 (315)
T TIGR03182       119 ATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPG  198 (315)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCE
Confidence            45555543   23345555567776652   24577788889999999877521111100  011234455556655556


Q ss_pred             eecCC--cCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590          139 VKAKD--ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus       139 ~~~~~--~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      .+++.  +.++.+.+.+|++.+..++ ||+.|++-..=+
T Consensus       199 ~~Vdg~d~~av~~a~~~A~~~ar~~~-gP~lIe~~t~R~  236 (315)
T TIGR03182       199 ERVDGMDVLAVREAAKEAVERARSGK-GPILLEMKTYRF  236 (315)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEeCCcC
Confidence            67764  4577888899999888865 999999966543

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=89.32  E-value=14  Score=41.77  Aligned_cols=178  Identities=16%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             CCcEEe-cCchHHHHH--HHHHHHhH-hCCcEEEEEc-CCh-hhHhhHHHHHH-hhhCCCcEEEEeCCCCcccCCCC-CC
Q 011590           51 GVRFIA-FHNEQSAGY--AASAYGYL-TGKPGILLTV-SGP-GCVHGLAGLSN-GMINTWPIVMISGSCDQKDFGRG-DF  122 (482)
Q Consensus        51 ~i~~v~-~~~E~~A~~--~A~g~ar~-tgk~~v~~~t-~Gp-G~~N~~~ai~~-A~~~~~Pvl~i~g~~~~~~~~~~-~~  122 (482)
                      .=+++. --.|+++..  +|.|-++. .|++.+.+++ ..+ |+.-+.-=|-. +-+...++++.+.......-+.| .|
T Consensus       564 PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qH  643 (891)
T PRK09405        564 DGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQH  643 (891)
T ss_pred             CCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccC
Confidence            345553 478999888  88887775 4554444433 333 33333332332 34455666666655544443333 35


Q ss_pred             CCcCHhhhhccccce-eeecCCcCcHHHHHHHHHHHhhcCCCc--eEEEEcC-cchhccccChhHHHHHHHhhhhhcccc
Q 011590          123 QELDQVEAVKPFSKF-AVKAKDITEVPKCVAQVLERAVSGRPG--GCYLDLP-TDVLHQTISVSEAEKLLKEAESAKETV  198 (482)
Q Consensus       123 q~~d~~~~~~~~~k~-~~~~~~~~~~~~~l~~A~~~a~~~~~g--Pv~l~iP-~dv~~~~~~~~~~~~~~~~~~~~~~~~  198 (482)
                      |+..-..+++.+... ++.+.+..++..+++.+++.+.... +  |+||.+. ........++..               
T Consensus       644 qdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~-~~~~yYlrl~ne~~~~~~~pe~~---------------  707 (891)
T PRK09405        644 EDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQ-ENVFYYITVMNENYHQPAMPEGA---------------  707 (891)
T ss_pred             CchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcC-CCeEEEEEeCCCCCCCCCCCccc---------------
Confidence            665555688887554 4456677888889999988766333 4  7889986 111111111000               


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC-----CCEEEEcCCccccccHHHHHHHHHHhCCc--Ee
Q 011590          199 TQGGIVNSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIP--FL  250 (482)
Q Consensus       199 ~~~~~~~~~~~~~~~~L~~a~-----rpvil~G~g~~~~~~~~~l~~lae~~g~p--v~  250 (482)
                            +..+-+....|+..+     .-|.|+|.|.-...+.++...|++..|+-  |+
T Consensus       708 ------~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Vi  760 (891)
T PRK09405        708 ------EEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVW  760 (891)
T ss_pred             ------ccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEE
Confidence                  001111111232222     14888888887677777888888766654  55

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=89.24  E-value=1.9  Score=46.96  Aligned_cols=154  Identities=10%  Similarity=0.004  Sum_probs=90.0

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChH-HHHHHHHhCCCcEEecCchH---HHHHHHHHHHhHh-CCcEEEEEcCChhh
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVT-SLANRAVQLGVRFIAFHNEQ---SAGYAASAYGYLT-GKPGILLTVSGPGC   88 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~-~l~~al~~~~i~~v~~~~E~---~A~~~A~g~ar~t-gk~~v~~~t~GpG~   88 (482)
                      ++..+ +++.|.+.-=+.+|..=++... .....+....-.++....=.   .+.-+|.|.+.+. +|+.++++--| |+
T Consensus       387 l~~~~-v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG-~f  464 (616)
T PRK07418        387 IYPQE-VLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDA-SF  464 (616)
T ss_pred             cCHHH-HHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcch-Hh
Confidence            44433 4555555422555554444322 22233332223344332211   1233566666665 67777777555 33


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CCC----CC--CCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----DF--QELDQVEAVKPFSKFAVKAKDITEVPKCVAQ  153 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~~----~~--q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~  153 (482)
                      .=.+.-|..|...++|+++|.-.-.....         +..    .+  ...|-..+.+.+.-+..++++++++.+.+++
T Consensus       465 ~m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~  544 (616)
T PRK07418        465 LMNIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVISERDQLKDAIAE  544 (616)
T ss_pred             hhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHH
Confidence            33356788999999999999876543210         000    11  2356677888888888999998888777777


Q ss_pred             HHHHhhcCCCceEEEEcCcch
Q 011590          154 VLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       154 A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      |+.    . .+|+.|++..|-
T Consensus       545 a~~----~-~~p~lIeV~i~~  560 (616)
T PRK07418        545 ALA----H-DGPVLIDVHVRR  560 (616)
T ss_pred             HHh----C-CCCEEEEEEecC
Confidence            663    3 389999998873

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=89.24  E-value=4.9  Score=39.35  Aligned_cols=116  Identities=15%  Similarity=0.066  Sum_probs=69.9

Q ss_pred             CCcEEecCchHHHHHHHHHHHhHh-----CCcEEE-EEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCC---------cc
Q 011590           51 GVRFIAFHNEQSAGYAASAYGYLT-----GKPGIL-LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCD---------QK  115 (482)
Q Consensus        51 ~i~~v~~~~E~~A~~~A~g~ar~t-----gk~~v~-~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~---------~~  115 (482)
                      ++-++.+.++.+.+. |.|.+++.     +...|+ +.--|-.....+.++-.|...+.|+++|.=+..         +.
T Consensus        63 ~~~~i~~~~G~~~~~-A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~  141 (300)
T PRK11864         63 TVPVLHTAFAATAAV-ASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSS  141 (300)
T ss_pred             cccceeehhhChHHH-HHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCC
Confidence            566777888877655 56777753     223333 333333334456899999999999999975432         11


Q ss_pred             cCCCC----------CCCCcCHhhhhccc-cceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590          116 DFGRG----------DFQELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus       116 ~~~~~----------~~q~~d~~~~~~~~-~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      ..+.+          .....|...++..+ ..|..++.. .+. ..+.++++.|...+ ||.+|.+
T Consensus       142 ~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~-~~~-~~~~~~i~~A~~~~-Gps~I~~  204 (300)
T PRK11864        142 STPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASI-AYP-EDFIRKLKKAKEIR-GFKFIHL  204 (300)
T ss_pred             CCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeC-CCH-HHHHHHHHHHHhCC-CCEEEEE
Confidence            11111          12335777766654 457776643 333 34467777777754 9999875

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=89.20  E-value=1.8  Score=46.75  Aligned_cols=107  Identities=15%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--CC-C-CCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--GD-F-QELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~~-~-q~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--|. +.=...-|.+|...++|++++.-+-....          .++  +. + ...|-
T Consensus       426 glpaaiGa~la~p~~~vv~i~GDG~-f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~  504 (572)
T PRK08979        426 GLPAAMGVKFAMPDETVVCVTGDGS-IQMNIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDF  504 (572)
T ss_pred             hhhHHHhhhhhCCCCeEEEEEcchH-hhccHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCH
Confidence            444566666664 467777775553 33345789999999999999987665221          011  11 1 12566


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+..+..++++++++.+.+++|+.    .+.+|+.|++..|-
T Consensus       505 ~~~A~a~G~~~~~v~~~~eL~~al~~a~~----~~~~p~lIev~i~~  547 (572)
T PRK08979        505 AKIAEAYGHVGIRISDPDELESGLEKALA----MKDRLVFVDINVDE  547 (572)
T ss_pred             HHHHHHCCCeEEEECCHHHHHHHHHHHHh----cCCCcEEEEEEeCC
Confidence            77888888888999998888777777764    23489999998873

>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]

Probab=88.87  E-value=0.74  Score=42.54  Aligned_cols=65  Identities=22%  Similarity=0.287  Sum_probs=45.8

Q ss_pred             hcCCEEEEecCccCcccccCCCC-CCCCCCcEEEEeCCchhh--cccC-CceeEeccHHHHHHHHHHhhh
Q 011590          276 GQCDVALVVGARLNWLLHFGEPP-KWSKDVKFVLVDVCKEEI--ELRK-PHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       276 ~~aDlvl~iG~~~~~~~~~g~~~-~~~~~~~ii~id~d~~~~--~~~~-~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ..+|++|++|+++..+. +...+ ..+...+=+.|+.+..-.  +..+ .|+.+.+|....+++|.+.|.
T Consensus       211 ~~~dl~lV~GTSL~V~P-FAsLpe~vp~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLG  279 (314)
T KOG2682|consen  211 LKVDLLLVMGTSLQVQP-FASLPEKVPLSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLG  279 (314)
T ss_pred             cccceEEEeccceeeee-cccchhhhhhcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhC
Confidence            45899999999997543 33322 234455666677766542  3333 499999999999999999985

>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]

Probab=88.86  E-value=1.1  Score=42.85  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             CCCCCCcccch--HHHHhhhcCCEEEEecCccCcccccCCC-CCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHH
Q 011590          259 LPDTHPLAATA--ARSLAIGQCDVALVVGARLNWLLHFGEP-PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEM  335 (482)
Q Consensus       259 ~~~~hp~~~G~--~~~~~l~~aDlvl~iG~~~~~~~~~g~~-~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~  335 (482)
                      .++++.+-...  .+....++||++|.+|+++.-...+.++ .....+.|++-||.++...+ ...++.|.|+.+.++..
T Consensus       196 ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hD-k~A~l~Ihg~vd~Vm~~  274 (353)
T KOG1905|consen  196 LDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHD-KIANLKIHGKVDLVMAS  274 (353)
T ss_pred             ccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCccc-chhheeehhhHHHHHHH
Confidence            45566555542  3456778999999999999754433222 12246789999999875443 23478899999999999


Q ss_pred             HHHhhhc
Q 011590          336 INKEIKD  342 (482)
Q Consensus       336 L~~~l~~  342 (482)
                      |.+.|.-
T Consensus       275 lm~~Lgv  281 (353)
T KOG1905|consen  275 LMELLGV  281 (353)
T ss_pred             HHHHhCC
Confidence            9998863

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=88.81  E-value=1.6  Score=46.72  Aligned_cols=104  Identities=13%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C-------CCC--CCCCc--C-Hhhhh
Q 011590           66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F-------GRG--DFQEL--D-QVEAV  131 (482)
Q Consensus        66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~-------~~~--~~q~~--d-~~~~~  131 (482)
                      +|.|...+. +|+.++++--|.-..| +.-|.+|...++|+++|.-.-.... .       ..+  ...++  . -..+.
T Consensus       416 aAIGAkla~P~r~Vv~i~GDG~F~m~-~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klA  494 (550)
T COG0028         416 AAIGAKLAAPDRKVVAIAGDGGFMMN-GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLA  494 (550)
T ss_pred             HHHHHHhhCCCCcEEEEEcccHHhcc-HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHH
Confidence            455556655 4778888877654444 7899999999999999987654221 0       011  11111  1 33555


Q ss_pred             ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590          132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus       132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      +.+.-...++++++++.+.+++|+    . .++|+.|+++.|--
T Consensus       495 ea~G~~g~~v~~~~el~~al~~al----~-~~~p~lidv~id~~  533 (550)
T COG0028         495 EAYGAKGIRVETPEELEEALEEAL----A-SDGPVLIDVVVDPE  533 (550)
T ss_pred             HHcCCeeEEeCCHHHHHHHHHHHH----h-CCCCEEEEEEecCc
Confidence            666667778888888766666666    4 34899999998864

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=88.79  E-value=15  Score=33.35  Aligned_cols=106  Identities=11%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCC-cEEEEeCCCCcc-cCCC-CC-CCCcCHhhhhcccc-c
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTW-PIVMISGSCDQK-DFGR-GD-FQELDQVEAVKPFS-K  136 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~-Pvl~i~g~~~~~-~~~~-~~-~q~~d~~~~~~~~~-k  136 (482)
                      +.-+|.|.+.+. +++.+|++--| ++.-.+..|..+...+. |+++|.-+-... ..+. .. ....|...+.+.+. +
T Consensus        53 ~lpaAiGaala~p~~~Vv~i~GDG-~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~~  131 (188)
T cd03371          53 ASQIALGIALARPDRKVVCIDGDG-AALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYR  131 (188)
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCCc-HHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCCc
Confidence            344566666554 56777776554 33334567888777776 576666544322 1111 01 12356666666663 3


Q ss_pred             eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          137 FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       137 ~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +..++.+++++.+.+++|+    .. .+|+.|++..|-
T Consensus       132 ~~~~v~~~~el~~al~~a~----~~-~~p~lIev~~~~  164 (188)
T cd03371         132 AVYEVPSLEELVAALAKAL----AA-DGPAFIEVKVRP  164 (188)
T ss_pred             eEEecCCHHHHHHHHHHHH----hC-CCCEEEEEEecC
Confidence            4456777777665555554    43 489999988764

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>TIGR00300 conserved hypothetical protein TIGR00300

Probab=88.76  E-value=3.1  Score=41.55  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHHHHHHHh----CCCCEEEEcCCccccccHHHHHHHHHHhCCcE----------------eeCCCCC---
Q 011590          200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPF----------------LPTPMGK---  256 (482)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~----a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv----------------~~t~~~~---  256 (482)
                      +..+....++++++.|+.    ..+.+.+.|.-+...++.++|.+|.+.==+-.                +.|..|-   
T Consensus       179 ~E~p~~~~~~~ia~~lr~~r~~gG~Iv~V~GPAvvhtga~~ala~Lir~GYV~~LlaGNAlAtHDiE~al~GTsLG~di~  258 (407)
T TIGR00300       179 SERPVETLIEQIAWEMYEIRDKGGKIGVVAGPAVIHTGAAQALAHLIREGYVDALLAGNALAVHDIEQALYGTSLGVDIQ  258 (407)
T ss_pred             cCCccHHHHHHHHHHHHHHHHCCCCEEEEecCeEEecCcHHHHHHHHHcCcccEEecchHHHHhhhhHhhhCcccccccc
Confidence            345566778888877754    45678888888888899999999988632222                2233332   


Q ss_pred             --CCCCCCCCccc---------ch-----------------H--------------------------------HHHhhh
Q 011590          257 --GLLPDTHPLAA---------TA-----------------A--------------------------------RSLAIG  276 (482)
Q Consensus       257 --g~~~~~hp~~~---------G~-----------------~--------------------------------~~~~l~  276 (482)
                        ..+|..|..++         |.                 +                                -...++
T Consensus       259 ~~~~v~~GH~~Hl~~IN~irraGSI~~aVe~G~l~~Gimy~cvk~~VPfVLAGSIRDDGPLPdvitDv~~AQ~amR~~~~  338 (407)
T TIGR00300       259 RGIPVPGGHRHHLKAINSVRRAGGIRDAVEQGIIKKGVMYECVKNNIPYVLAGSIRDDGPLPDVITDVVRAQSKMRELLQ  338 (407)
T ss_pred             ccccCCCchHHHHHHHHHHHHcCCHHHHHHhCCCccchHHHHHhCCCCEEEeeeccCCCCCCcchhhHHHHHHHHHHHhc
Confidence              23444444432         10                 0                                113567


Q ss_pred             cCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc----cC-CceeEeccHHHHHHHHHHhhhc
Q 011590          277 QCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL----RK-PHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       277 ~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~----~~-~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ++|+||.+.+-+-...+.+   ..+...+++.||++|....+    .. ..+.++.|+..||..|.++|.+
T Consensus       339 ~a~~vimlaTmLHSIAtGN---m~Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~~  406 (407)
T TIGR00300       339 GADMVLMLSTMLHSIAVGN---LLPSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIKQ  406 (407)
T ss_pred             cCCeehhHHHHHHHHhhcc---cccccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHhc
Confidence            8999999998887654432   23455799999999987643    22 2678999999999999988753

All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=88.73  E-value=2.4  Score=45.93  Aligned_cols=107  Identities=16%  Similarity=0.151  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--CC-CC-CcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--GD-FQ-ELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~~-~q-~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--| |+.=...-|..|...++|+++|.-+-....          .++  .. ++ ..|-
T Consensus       442 glpaaiGa~lA~p~r~Vv~i~GDG-sf~m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~  520 (587)
T PRK06965        442 GLPYAMGIKMAHPDDDVVCITGEG-SIQMCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDF  520 (587)
T ss_pred             hHHHHHHHHHhCCCCcEEEEEcch-hhhcCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCH
Confidence            345677777765 57777777555 344445789999999999999997654321          001  11 11 2466


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..+.+.+.-+..++++.+++.+.+++|++    .+.+|+.|++..|-
T Consensus       521 ~~iA~a~G~~~~~v~~~~eL~~al~~a~~----~~~~p~lieV~i~~  563 (587)
T PRK06965        521 VKLAEAYGHVGMRIEKTSDVEPALREALR----LKDRTVFLDFQTDP  563 (587)
T ss_pred             HHHHHHCCCEEEEECCHHHHHHHHHHHHh----cCCCcEEEEEEecc
Confidence            77888888888999998888777776665    22489999998873

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=88.64  E-value=2  Score=41.78  Aligned_cols=107  Identities=12%  Similarity=0.015  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcc-----------cCCC-------CCC
Q 011590           62 SAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK-----------DFGR-------GDF  122 (482)
Q Consensus        62 ~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~-----------~~~~-------~~~  122 (482)
                      .+.-+|.|...+. .++.++++--|-...-.++.+..|...++||++|.-+-...           ..|.       +..
T Consensus        57 ~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~  136 (287)
T TIGR02177        57 RALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNI  136 (287)
T ss_pred             cHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCcc
Confidence            3556778888775 56777777555433355678999999999999997543211           0110       001


Q ss_pred             ---CCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          123 ---QELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       123 ---q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                         ...+...+...++..... ..+++++.+.|    +.|+.. +||++|++...
T Consensus       137 ~~~~np~~~a~A~g~g~va~~~~~~~~eL~~ai----~~Al~~-~GpslIeV~~p  186 (287)
T TIGR02177       137 QDPVNPLLLAIALGYTFVARGFSGDVAHLKEII----KEAINH-KGYALVDILQP  186 (287)
T ss_pred             CCCCCHHHHHHhCCCCeEEEEecCCHHHHHHHH----HHHHhC-CCCEEEEEeCC
Confidence               112333444444322222 35555555444    445454 48999888654

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=88.62  E-value=1.9  Score=46.59  Aligned_cols=106  Identities=10%  Similarity=0.042  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-------CC--C---CCC-CCcCHhh
Q 011590           63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-------FG--R---GDF-QELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-------~~--~---~~~-q~~d~~~  129 (482)
                      +.-+|.|.+.+.+|+.++++--|. +.=.+.-|..|...++|+++|.-.-..-.       .+  .   ..+ ...|-..
T Consensus       429 glpaaiGa~la~~~~vv~i~GDG~-f~m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  507 (569)
T PRK09259        429 GMGYAIAAAVETGKPVVAIEGDSA-FGFSGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDK  507 (569)
T ss_pred             cHHHHHHHHhcCCCcEEEEecCcc-ccccHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHH
Confidence            445677777777788777775553 33334678889999999999987654210       01  0   011 2346667


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +.+.+.-...++++++++.+.+++|+.    . .||+.|++..|-
T Consensus       508 lA~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIev~id~  547 (569)
T PRK09259        508 MMEAFGGVGYNVTTPDELRHALTEAIA----S-GKPTLINVVIDP  547 (569)
T ss_pred             HHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEECC
Confidence            777777778899998888777777753    2 489999999873

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=88.61  E-value=0.38  Score=53.60  Aligned_cols=49  Identities=20%  Similarity=0.109  Sum_probs=38.8

Q ss_pred             CCCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~  478 (482)
                      ..|+||-|++.|+|.|++.+           +.+|++|+|||-++=...  .+..+.+++|.
T Consensus       187 sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLd  248 (889)
T TIGR03186       187 PTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLD  248 (889)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence            46999999999999988622           578999999999876533  46667788874

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1

Probab=88.41  E-value=1.3  Score=44.99  Aligned_cols=107  Identities=18%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCC--CCcccchHHHHhhhcCCE
Q 011590          205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT--HPLAATAARSLAIGQCDV  280 (482)
Q Consensus       205 ~~~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~--hp~~~G~~~~~~l~~aDl  280 (482)
                      +++++.+++.|++.+  ...++.|+.. ..+....+.+|++.+|.+-+.+...-...+..  ..+.+|... .-+++||+
T Consensus        71 deAl~~ia~~l~~~~~~si~~~~g~~~-~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~-~di~~ad~  148 (375)
T cd02773          71 EEALAAIAKALKGVKPDEIAAIAGDLA-DVESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTTI-AGIEEADA  148 (375)
T ss_pred             HHHHHHHHHHHhhcCcCcEEEEeCCCC-CHHHHHHHHHHHHHhCCCcccccccccccccccccccccCCCH-HHHhhCCE
Confidence            467788888888764  5566655433 22444568899999998765443221111111  112222222 23589999


Q ss_pred             EEEecCccCcccc-cC-CC-CCC-CCCCcEEEEeCCc
Q 011590          281 ALVVGARLNWLLH-FG-EP-PKW-SKDVKFVLVDVCK  313 (482)
Q Consensus       281 vl~iG~~~~~~~~-~g-~~-~~~-~~~~~ii~id~d~  313 (482)
                      ||++|+++.+... .. +. ..+ ..+++++.||+..
T Consensus       149 il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~  185 (375)
T cd02773         149 VLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPV  185 (375)
T ss_pred             EEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCcc
Confidence            9999998853211 00 11 112 2368999998754

The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=87.90  E-value=9.5  Score=41.57  Aligned_cols=107  Identities=14%  Similarity=0.062  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CC-CC---CC-----C
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FG-RG---DF-----Q  123 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~-~~---~~-----q  123 (482)
                      +.-+|.|.+.+. +|+.+|++--| |+.=....|.+|...++|+++|.-+-....         .+ ..   .+     .
T Consensus       452 glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~  530 (612)
T PRK07789        452 AVPAAMGAKVGRPDKEVWAIDGDG-CFQMTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHR  530 (612)
T ss_pred             hhhhHHhhhccCCCCcEEEEEcch-hhhccHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCC
Confidence            455667777764 67877776555 455456789999999999999987654221         00 00   11     1


Q ss_pred             CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       124 ~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ..|...+.+.+.-+..++++++++.+.|++|+..    ..||+.|++..|-
T Consensus       531 ~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~----~~~p~lIev~i~~  577 (612)
T PRK07789        531 IPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAI----NDRPVVIDFVVGK  577 (612)
T ss_pred             CCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhc----CCCcEEEEEEECC
Confidence            2577778888888888999988887777777753    1389999999874

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=87.85  E-value=2.2  Score=46.23  Aligned_cols=105  Identities=16%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC----CCC-CCcCH
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDF-QELDQ  127 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~----~~~-q~~d~  127 (482)
                      +.-+|.|.+.+. +|+.++++--| ++.-..+.|.+|...++|+++|.-+-....         .+.    ..+ ...|.
T Consensus       424 ~lpaaiGa~la~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~  502 (586)
T PRK06276        424 GFPAAIGAKVAKPDANVIAITGDG-GFLMNSQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDF  502 (586)
T ss_pred             chhHHHhhhhhcCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCH
Confidence            445677777765 56777776555 344446789999999999999987664311         011    011 23567


Q ss_pred             hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ..+.+.+.-+..++++++++...+++|+    .. .||..|++..|
T Consensus       503 ~~la~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~lIeV~i~  543 (586)
T PRK06276        503 VKLAESYGVKADRVEKPDEIKEALKEAI----KS-GEPYLLDIIID  543 (586)
T ss_pred             HHHHHHCCCeEEEECCHHHHHHHHHHHH----hC-CCCEEEEEEec
Confidence            7788888777888998888766666665    32 48899988765

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=87.76  E-value=2.7  Score=44.99  Aligned_cols=101  Identities=9%  Similarity=0.058  Sum_probs=64.1

Q ss_pred             HHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-----CC-CCC---CCCcCHhhhhccccc
Q 011590           67 ASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FG-RGD---FQELDQVEAVKPFSK  136 (482)
Q Consensus        67 A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-----~~-~~~---~q~~d~~~~~~~~~k  136 (482)
                      |.|.+.+. +|+.+|++--| |+.=.+.-|.+|...++|+++|.-+-....     .+ ...   ....|-..+.+.+..
T Consensus       413 aiGa~la~p~~~vv~i~GDG-~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~  491 (539)
T TIGR03393       413 AFGAQTACPNRRVILLIGDG-SAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSL  491 (539)
T ss_pred             HHHHHhcCCCCCeEEEEcCc-HHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCC
Confidence            44444443 56777777555 344445789999999999999987654321     11 011   122355556665543


Q ss_pred             ----eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          137 ----FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       137 ----~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                          +..++++.+++.+.+++|+    . ..||+.|++..|
T Consensus       492 ~~~~~~~~v~~~~el~~al~~a~----~-~~~p~liev~i~  527 (539)
T TIGR03393       492 DPQSECWRVSEAEQLADVLEKVA----A-HERLSLIEVVLP  527 (539)
T ss_pred             CCccceEEeccHHHHHHHHHHHh----c-cCCeEEEEEEcC
Confidence                3788888888777776665    3 348999999876

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=87.65  E-value=0.4  Score=44.33  Aligned_cols=56  Identities=20%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEec
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVG  327 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~  327 (482)
                      ..+.+++||++|+||+++..+.....+.. ...++++|.||.++...... .++.+.+
T Consensus       149 a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~-~d~~~~~  205 (206)
T cd01410         149 AAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKL-ADLVIHG  205 (206)
T ss_pred             HHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCcc-ccEEEeC
Confidence            34567899999999999875433222211 13568899999987655422 2454444

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

Probab=87.48  E-value=3  Score=41.71  Aligned_cols=111  Identities=20%  Similarity=0.189  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCc----CHhhhhc
Q 011590           60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL----DQVEAVK  132 (482)
Q Consensus        60 E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~----d~~~~~~  132 (482)
                      =.-|+.+|.+..+...+..|+++..|=|++|-   .-++--|-.-+.|||++.=.......-....|..    .+....-
T Consensus       142 ~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~ay  221 (358)
T COG1071         142 IPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAY  221 (358)
T ss_pred             ccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhcc
Confidence            33455556555555435558888888888774   4577778888999999986553332211112321    2233333


Q ss_pred             cccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590          133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus       133 ~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      .+......=.++..+.+.+.+|...|..+. ||+.|+.=
T Consensus       222 gipgv~VDG~D~~avy~~~~~A~e~AR~g~-GPtLIE~~  259 (358)
T COG1071         222 GIPGVRVDGNDVLAVYEAAKEAVERARAGE-GPTLIEAV  259 (358)
T ss_pred             CCCeEEECCcCHHHHHHHHHHHHHHHHcCC-CCEEEEEE
Confidence            344444455577789999999999999987 99999874

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=87.43  E-value=3.9  Score=44.40  Aligned_cols=106  Identities=17%  Similarity=0.145  Sum_probs=69.3

Q ss_pred             HHHHHHhHh-CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEeCCCCccc-CCC------C------CCCCcCHhhh
Q 011590           66 AASAYGYLT-GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKD-FGR------G------DFQELDQVEA  130 (482)
Q Consensus        66 ~A~g~ar~t-gk~~v~~~t~GpG~~-N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~------~------~~q~~d~~~~  130 (482)
                      +|.|.+.+. .|+.++++--| ++. +.+..|.+|...++|+++|.-+-.... .+.      +      ..+.+|...+
T Consensus       411 ~AiGa~~a~p~~~Vv~i~GDG-~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~i  489 (595)
T TIGR03336       411 VASGLSKAGEKQRIVAFIGDS-TFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEEL  489 (595)
T ss_pred             HHhhhhhcCCCCCEEEEeccc-hhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHH
Confidence            455665544 46766666554 344 348999999999999999876553221 110      0      1134677778


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.-...++.+++++.+ +.+|++.+... +||..|.+..+-
T Consensus       490 a~a~G~~~~~v~~~~~l~~-l~~al~~a~~~-~gp~li~v~~~C  531 (595)
T TIGR03336       490 CRASGVEFVEVVDPLNVKE-TIEVFKAALAA-EGVSVIIAKQPC  531 (595)
T ss_pred             HHHcCCCEEEEeCcCCHHH-HHHHHHHHHhc-CCCEEEEEcccC
Confidence            8888777788888877643 35666666654 489999988764

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=87.17  E-value=7.1  Score=38.22  Aligned_cols=117  Identities=19%  Similarity=0.177  Sum_probs=71.6

Q ss_pred             CCcEEecCchHHHHHHHHHHHhHh---CC--cEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------
Q 011590           51 GVRFIAFHNEQSAGYAASAYGYLT---GK--PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------  116 (482)
Q Consensus        51 ~i~~v~~~~E~~A~~~A~g~ar~t---gk--~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------  116 (482)
                      +..++...+|.++++ |.|.+++.   ++  ..+++.--|-.....+.+|..|...+.++++|.=+.....         
T Consensus        63 ~~~~~~~~fg~~~a~-a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~  141 (299)
T PRK11865         63 NVPWIHVAFENAAAV-ASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGS  141 (299)
T ss_pred             ccccchhhhcchHHH-HHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCC
Confidence            466777777877765 56777753   33  5555555555556677899999999999999875543211         


Q ss_pred             CCC---------C------CCCCcCHhhhhccc-cceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590          117 FGR---------G------DFQELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus       117 ~~~---------~------~~q~~d~~~~~~~~-~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ...         |      .....|...++... +.|..++. +.+ +..+.++++.|...+ ||.+|.+=
T Consensus       142 Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~-~~~-~~~l~~~i~~A~~~~-Gps~I~v~  209 (299)
T PRK11865        142 TPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATAS-IGY-PEDFMEKVKKAKEVE-GPAYIQVL  209 (299)
T ss_pred             CCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEe-CCC-HHHHHHHHHHHHhCC-CCEEEEEE
Confidence            111         0      11235666665443 45666653 333 333456777776654 99998763

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=86.54  E-value=0.62  Score=51.56  Aligned_cols=49  Identities=18%  Similarity=0.048  Sum_probs=38.8

Q ss_pred             CCCcccchHHHHHHHhhhC-----------CCCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFGFSAV--EVEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~-----------p~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~  478 (482)
                      ..|+||-|++.|+|.|++.           .+++|++|+|||-++=...  .+..+.+++|.
T Consensus       187 sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLd  248 (885)
T TIGR00759       187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLD  248 (885)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence            4599999999999988864           3578999999999875433  46667788874

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B

Probab=86.15  E-value=1.9  Score=44.31  Aligned_cols=110  Identities=21%  Similarity=0.152  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCc-ccch---HHHHhhhcCCE
Q 011590          205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-AATA---ARSLAIGQCDV  280 (482)
Q Consensus       205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~-~~G~---~~~~~l~~aDl  280 (482)
                      +++++.+++.|++++++.++.|+.. .......+.+|++.+|..+-. ...-+..+....+ ..|.   ...+..++||+
T Consensus        63 deAl~~ia~~l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~  140 (421)
T TIGR03129        63 EEAIEKAAEILKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVIDN-TASVCHGPSLLALQEVGWPSCTLGEVKNRADV  140 (421)
T ss_pred             HHHHHHHHHHHHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCccc-cchhccccHHHHHHhcCCccccHHHHhhcCCE
Confidence            5788899999999999877655543 234445678999999874311 0000000000000 0011   11133347999


Q ss_pred             EEEecCccCccccc--CC--------CCCC-CCCCcEEEEeCCchhh
Q 011590          281 ALVVGARLNWLLHF--GE--------PPKW-SKDVKFVLVDVCKEEI  316 (482)
Q Consensus       281 vl~iG~~~~~~~~~--g~--------~~~~-~~~~~ii~id~d~~~~  316 (482)
                      ||++|+++......  .+        ...- .++.++|.||+.....
T Consensus       141 il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t  187 (421)
T TIGR03129       141 IIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDT  187 (421)
T ss_pred             EEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCc
Confidence            99999987542210  00        0001 3457899998865544

Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.

>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]

Probab=85.99  E-value=0.57  Score=44.54  Aligned_cols=69  Identities=20%  Similarity=0.318  Sum_probs=47.4

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCC-C-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-W-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ....+++||++|++|++.-.+.-.+ .+. . ..+.+++.||..+.... ...+..+.+++..+++.|.+.+.
T Consensus       176 ~~~~~~~~d~liviGTSl~V~Paa~-~p~~~~~~g~~~i~iN~~~~~~~-~~~d~~i~~~a~~~~~~l~~~~~  246 (250)
T COG0846         176 ALEALKEADLLIVIGTSLKVYPAAG-LPELAKRRGAKVIEINLEPTRLD-PIADEVIRGDAGEVLPLLLEELL  246 (250)
T ss_pred             HHHHhccCCEEEEECcceEEcChhh-hhHHHHhcCCEEEEECCCcccCc-chhHHHHHhhHHHHHHHHHHHhh
Confidence            4456689999999999987654444 222 1 46788888888554332 12367788888888888877654

>PRK12474 hypothetical protein; Provisional

Probab=85.98  E-value=1.8  Score=46.11  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=68.5

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------C---CC-------CCC-
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------G---RG-------DFQ-  123 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~---~~-------~~q-  123 (482)
                      .-+|.|.+.+. +|+.+|++--| |+.=.+.-|.+|...++|+++|.-.-.....        +   .+       .+. 
T Consensus       395 lpaAiGa~lA~p~r~vv~i~GDG-~f~m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~  473 (518)
T PRK12474        395 LPLAAGAAVAAPDRKVVCPQGDG-GAAYTMQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHN  473 (518)
T ss_pred             HHHHHHHHHHCCCCcEEEEEcCc-hhcchHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCC
Confidence            34567777765 57777777555 3444458899999999999999876542210        0   00       011 


Q ss_pred             -CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590          124 -ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus       124 -~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                       ..|-..+.+.+.-...++++++++.+.+++|+.     ..||+.|++.
T Consensus       474 ~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~-----~~~p~liev~  517 (518)
T PRK12474        474 PELNWMKIAEGLGVEASRATTAEEFSAQYAAAMA-----QRGPRLIEAM  517 (518)
T ss_pred             CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHc-----CCCCEEEEEE
Confidence             246667778877788899988888777777753     3489999874

>PRK07586 hypothetical protein; Validated

Probab=84.85  E-value=2.6  Score=44.77  Aligned_cols=150  Identities=11%  Similarity=0.106  Sum_probs=85.9

Q ss_pred             CcHHHHHHHHHHh-cCCCEEEecC-CcChHHHHHHHHh-CCCcEEecCchHH---HHHHHHHHHhHh-CCcEEEEEcCCh
Q 011590           14 IDGNTLAAKSLSL-FGATHMFGVV-GIPVTSLANRAVQ-LGVRFIAFHNEQS---AGYAASAYGYLT-GKPGILLTVSGP   86 (482)
Q Consensus        14 ~~~~~~l~~~L~~-~Gv~~vFgvp-G~~~~~l~~al~~-~~i~~v~~~~E~~---A~~~A~g~ar~t-gk~~v~~~t~Gp   86 (482)
                      ++-.+ +++.|.+ ..=+.++..= |+........+.- ..-+++.... .+   +.-+|.|.+.+. +|+.+|++--| 
T Consensus       337 i~~~~-~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDG-  413 (514)
T PRK07586        337 LTPEA-IAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDG-  413 (514)
T ss_pred             cCHHH-HHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEech-
Confidence            44444 3444443 3334444443 3333334333332 2234444332 22   233566766664 57777777555 


Q ss_pred             hhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCC---C-------CC--CCcCHhhhhccccceeeecCCcCc
Q 011590           87 GCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGR---G-------DF--QELDQVEAVKPFSKFAVKAKDITE  146 (482)
Q Consensus        87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~---~-------~~--q~~d~~~~~~~~~k~~~~~~~~~~  146 (482)
                      |+.=.+..|.+|...++|+++|.-+-....        .+.   +       .+  ...|...+.+.+.-...+++++++
T Consensus       414 sf~m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~e  493 (514)
T PRK07586        414 SAMYTIQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVTTAEE  493 (514)
T ss_pred             HHHhHHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeCCHHH
Confidence            344446899999999999988876443211        000   0       11  235777788888778889988888


Q ss_pred             HHHHHHHHHHHhhcCCCceEEEEcC
Q 011590          147 VPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus       147 ~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      +.+.+++|+    .. .||+.|++.
T Consensus       494 l~~al~~a~----~~-~~p~liev~  513 (514)
T PRK07586        494 FADALAAAL----AE-PGPHLIEAV  513 (514)
T ss_pred             HHHHHHHHH----cC-CCCEEEEEE
Confidence            766666665    33 489999875

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=84.82  E-value=1.4  Score=49.40  Aligned_cols=49  Identities=20%  Similarity=0.095  Sum_probs=38.5

Q ss_pred             CCCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~  478 (482)
                      ..|+||-|++.|+|.|+.++           +++|++|+|||-++=...  .+..+.+++|.
T Consensus       201 ~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~Ld  262 (896)
T PRK13012        201 PTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLD  262 (896)
T ss_pred             CCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCC
Confidence            45999999999999988854           378999999999865432  46666688874

>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=84.56  E-value=3.3  Score=33.16  Aligned_cols=77  Identities=14%  Similarity=0.094  Sum_probs=48.8

Q ss_pred             EEEEcCCcccc-ccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCC
Q 011590          222 LIVFGKGAAYA-RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKW  300 (482)
Q Consensus       222 vil~G~g~~~~-~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~  300 (482)
                      ++-+|.|...+ -+.+.|++.+++.|+.+-.+..+..-+...       ....-+.++|+||.+|.......      .|
T Consensus         4 i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~-------l~~~~i~~Ad~vi~~~~~~~~~~------rf   70 (96)
T cd05569           4 VTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENE-------LTAEDIAEADAVILAADVPVDDE------RF   70 (96)
T ss_pred             EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCc-------CCHHHHhhCCEEEEecCCCCchh------hh
Confidence            34557777665 567889999999999877554443211111       12356889999999997654321      13


Q ss_pred             CCCCcEEEEeCC
Q 011590          301 SKDVKFVLVDVC  312 (482)
Q Consensus       301 ~~~~~ii~id~d  312 (482)
                       .+.++++.+++
T Consensus        71 -~gk~v~~~~~~   81 (96)
T cd05569          71 -AGKRVYEVSVA   81 (96)
T ss_pred             -CCCeEEEecHH
Confidence             24477766664

In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p

>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function

Probab=84.35  E-value=3.7  Score=36.08  Aligned_cols=121  Identities=18%  Similarity=0.163  Sum_probs=71.9

Q ss_pred             HhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCC---------------------CCCCCCCCcccch-----
Q 011590          216 KEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK---------------------GLLPDTHPLAATA-----  269 (482)
Q Consensus       216 ~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~---------------------g~~~~~hp~~~G~-----  269 (482)
                      .-|++|||=+-+.+. +-..+++.+||+.+|+++=...+.+                     |.=++.....-|-     
T Consensus         2 LlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNLFyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~   80 (178)
T PF02006_consen    2 LLAKHPVISVNGNTA-ALVPEEIVELAKATGAKIEVNLFYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERA   80 (178)
T ss_pred             CccCCCEEEEcccHH-HhChHHHHHHHHHhCCCEEEEcccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccc
Confidence            357999999877764 4677889999999999986554421                     1100000000010     


Q ss_pred             -HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          270 -ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       270 -~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                       ...+-+-.||+||+=   +.+-+..-  ..-.-+.++|.||.+|..-.....++.|+-++--++..|.+..++
T Consensus        81 ~v~~~GIy~ADVVLVP---LEDGDR~E--AL~~mGK~VIaIDLNPLSRTar~AtitIVDni~RA~p~~~~~~~~  149 (178)
T PF02006_consen   81 KVSKEGIYSADVVLVP---LEDGDRTE--ALVKMGKTVIAIDLNPLSRTARTATITIVDNITRAIPNMIEFARE  149 (178)
T ss_pred             eECcccceeccEEEec---cCCCcHHH--HHHHcCCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHHHHH
Confidence             011223456666653   21100000  001236789999999987766677899999988888888776543

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=84.28  E-value=1.2  Score=43.87  Aligned_cols=50  Identities=16%  Similarity=0.158  Sum_probs=35.5

Q ss_pred             CCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCChHHH----HHHHHcCcccccC
Q 011590          431 WGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEV----EVWLSCIIMISSI  482 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~~eL----~T~~r~~l~i~~~  482 (482)
                      .+.+|..+|.|.|.++|.    .+.-++++.|||+  .+-.++    --+..+++|++.|
T Consensus       100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga--~~qG~~~EalN~A~~~~lPvifv  157 (300)
T PF00676_consen  100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGA--TSQGDFHEALNLAALWKLPVIFV  157 (300)
T ss_dssp             ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGG--GGSHHHHHHHHHHHHTTTSEEEE
T ss_pred             cccccccCccccchhHhhhhcCCceeEEEEecCcc--cccCccHHHHHHHhhccCCeEEE
Confidence            366777788888887773    4678999999999  333333    3344689998753

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins

Probab=83.44  E-value=1.9  Score=45.18  Aligned_cols=112  Identities=12%  Similarity=-0.036  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHh------CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH----HHHh
Q 011590          205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA----RSLA  274 (482)
Q Consensus       205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~----~~~~  274 (482)
                      +++++.+++.|++      .+...++.|.+...........+|+..+|.+-+.....-+..+...+..+|..    ...-
T Consensus        88 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~d  167 (461)
T cd02750          88 DEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQTDVPESAD  167 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCCCCCCChhH
Confidence            3556666666653      22222333323221223344678999999876543322221222333334431    1234


Q ss_pred             hhcCCEEEEecCccCccccc--CCCCCC-CCCCcEEEEeCCchhh
Q 011590          275 IGQCDVALVVGARLNWLLHF--GEPPKW-SKDVKFVLVDVCKEEI  316 (482)
Q Consensus       275 l~~aDlvl~iG~~~~~~~~~--g~~~~~-~~~~~ii~id~d~~~~  316 (482)
                      +++||+||++|+++.+....  .+.... ..++|+|.||+.....
T Consensus       168 ~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~t  212 (461)
T cd02750         168 WYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPS  212 (461)
T ss_pred             HhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcc
Confidence            68999999999987542111  111111 3568999999876554

Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=83.29  E-value=1.5  Score=49.08  Aligned_cols=48  Identities=19%  Similarity=0.073  Sum_probs=38.9

Q ss_pred             CCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590          431 WGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM  478 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~  478 (482)
                      .|+||.|++.|+|.|++++           +++|++|+|||-++=...  .+..+.+++|.
T Consensus       194 tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~Ld  254 (891)
T PRK09405        194 TVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLD  254 (891)
T ss_pred             ccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence            5999999999999999865           678999999999875432  46666788874

>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E

Probab=82.83  E-value=2.4  Score=46.35  Aligned_cols=111  Identities=16%  Similarity=0.135  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhCC---------------CC--EEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCC---CC
Q 011590          205 NSDIDKAVSLLKEAK---------------KP--LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT---HP  264 (482)
Q Consensus       205 ~~~~~~~~~~L~~a~---------------rp--vil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~---hp  264 (482)
                      +++++.+++.|++.+               +|  +.+.|+.....+..-.+.+|+..+|.+.+... ++-+....   ..
T Consensus        74 deAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l~  152 (649)
T cd02752          74 DEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGLA  152 (649)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHHH
Confidence            456777777776542               34  45555543322334468999999998766432 22111000   00


Q ss_pred             cccchH--H--HHhhhcCCEEEEecCccCccccc--CCCCC-CCC-CCcEEEEeCCchhh
Q 011590          265 LAATAA--R--SLAIGQCDVALVVGARLNWLLHF--GEPPK-WSK-DVKFVLVDVCKEEI  316 (482)
Q Consensus       265 ~~~G~~--~--~~~l~~aDlvl~iG~~~~~~~~~--g~~~~-~~~-~~~ii~id~d~~~~  316 (482)
                      ..+|..  .  -.-+++||+||++|+++.+...-  .+... ... ++|+|.||+.....
T Consensus       153 ~~~G~ga~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~T  212 (649)
T cd02752         153 NTFGRGAMTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRT  212 (649)
T ss_pred             hhcCCCCCCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCch
Confidence            111211  0  12368899999999987542211  11110 123 78999999866544

coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK13936 phosphoheptose isomerase; Provisional

Probab=80.80  E-value=11  Score=34.46  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=59.6

Q ss_pred             cHHHHHHHHHHhcCCCEEEecCCcChHH--HHHHHH------hCCCcEEecCchHHH----------HHHHHHH-HhHhC
Q 011590           15 DGNTLAAKSLSLFGATHMFGVVGIPVTS--LANRAV------QLGVRFIAFHNEQSA----------GYAASAY-GYLTG   75 (482)
Q Consensus        15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al~------~~~i~~v~~~~E~~A----------~~~A~g~-ar~tg   75 (482)
                      ..++.+++.|.+.+.=++||+-++....  +...+.      +.++..+....+...          ..+...+ +....
T Consensus        31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~  110 (197)
T PRK13936         31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ  110 (197)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence            4678889999999999999998875432  333343      345555544222111          0000011 11112


Q ss_pred             CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCC
Q 011590           76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD  113 (482)
Q Consensus        76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~  113 (482)
                      +--++++-|..| .-+.+..+..|+..++|+|.||+...
T Consensus       111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~  149 (197)
T PRK13936        111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDG  149 (197)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            222445555555 44577788889999999999999753

>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose

Probab=80.44  E-value=1.1  Score=41.73  Aligned_cols=55  Identities=25%  Similarity=0.405  Sum_probs=34.2

Q ss_pred             HhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEecc
Q 011590          273 LAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGD  328 (482)
Q Consensus       273 ~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D  328 (482)
                      +.++++|++|+||+++............ ..++++|.||.++.... ...++.+.+|
T Consensus       163 ~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~-~~~d~~~~~~  218 (218)
T cd01407         163 EALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPAD-RKADLVILGD  218 (218)
T ss_pred             HHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCC-ccceEEEeCC
Confidence            4567799999999998754322211112 24788999999876553 1235555443

Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.

>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria

Probab=80.17  E-value=4.6  Score=41.59  Aligned_cols=109  Identities=13%  Similarity=0.075  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhC------CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCC-c---ccchHHHHh
Q 011590          205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-L---AATAARSLA  274 (482)
Q Consensus       205 ~~~~~~~~~~L~~a------~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp-~---~~G~~~~~~  274 (482)
                      +++++.+++.|++.      +...++.|... .......+.+|++.+|.|.++.......+....- .   +.+ ....-
T Consensus        72 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~-~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d  149 (414)
T cd02772          72 ETALEYVAEGLSAIIKKHGADQIGALASPHS-TLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAPWLG-MPIAE  149 (414)
T ss_pred             HHHHHHHHHHHHHHHHhcCcceEEEEecCCC-CcHHHHHHHHHHHHhCCCCccCccccCccchhhhhccCCCCC-CcHHH
Confidence            35667777777653      22333444332 2234457899999999987643211110000000 0   001 11234


Q ss_pred             hhcCCEEEEecCccCccccc--CCCC-CCCCCCcEEEEeCCchh
Q 011590          275 IGQCDVALVVGARLNWLLHF--GEPP-KWSKDVKFVLVDVCKEE  315 (482)
Q Consensus       275 l~~aDlvl~iG~~~~~~~~~--g~~~-~~~~~~~ii~id~d~~~  315 (482)
                      ++++|+||++|+++......  .+.. ....+.|+|.||+-..+
T Consensus       150 i~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~  193 (414)
T cd02772         150 ISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD  193 (414)
T ss_pred             HHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence            78899999999987532110  0110 11246899999985443

The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	482
2c31_A	568	Crystal Structure Of Oxalyl-Coa Decarboxylase In Co		3e-88
2q27_A	564	Crystal Structure Of Oxalyl-Coa Decarboxylase From		4e-88
1ybh_A	590	Crystal Structure Of Arabidopsis Thaliana Acetohydr		5e-33
3e9y_A	584	Arabidopsis Thaliana Acetohydroxyacid Synthase In C		5e-33
2pan_A	616	Crystal Structure Of E. Coli Glyoxylate Carboligase		3e-29
1ozg_A	566	The Crystal Structure Of Klebsiella Pneumoniae Acet		8e-28
1jsc_A	630	Crystal Structure Of The Catalytic Subunit Of Yeast		1e-25
1n0h_A	677	Crystal Structure Of Yeast Acetohydroxyacid Synthas		1e-25
1pox_A	585	The Refined Structures Of A Stabilized Mutant And O		1e-23
1y9d_A	603	Pyruvate Oxidase Variant V265a From Lactobacillus P		2e-23
1pow_A	585	The Refined Structures Of A Stabilized Mutant And O		2e-23
2ez4_A	603	Pyruvate Oxidase Variant F479w Length = 603		3e-23
4fee_A	603	High-Resolution Structure Of Pyruvate Oxidase In Co		3e-23
3d7k_A	570	Crystal Structure Of Benzaldehyde Lyase In Complex		2e-22
2uz1_B	563	1.65 Angstrom Structure Of Benzaldehyde Lyase Compl		2e-22
3iae_A	570	Structure Of Benzaldehyde Lyase A28s Mutant With Be		2e-22
2ag0_A	563	Crystal Structure Of Benzaldehyde Lyase (Bal)- Nati		2e-22
3iaf_A	570	Structure Of Benzaldehyde Lyase A28s Mutant With Mo		2e-22
2ag1_A	563	Crystal Structure Of Benzaldehyde Lyase (Bal)- Seme		1e-20
2pgn_A	589	The Crystal Structure Of Fad And Thdp-Dependent Cyc		3e-14
1v5f_A	589	Crystal Structure Of Pyruvate Oxidase Complexed Wit		2e-10
1v5e_A	590	Crystal Structure Of Pyruvate Oxidase Containing Fa		2e-10
1upb_A	573	Carboxyethylarginine Synthase From Streptomyces Cla		9e-10
1upa_A	573	Carboxyethylarginine Synthase From Streptomyces Cla		3e-08
2vjy_A	563	Pyruvate Decarboxylase From Kluyveromyces Lactis In		3e-07
3eya_A	549	Structural Basis For Membrane Binding And Catalytic		3e-07
3ey9_A	572	Structural Basis For Membrane Binding And Catalytic		4e-07
1yno_A	527	High Resolution Structure Of Benzoylformate Decarbo		2e-06
3fzn_A	534	Intermediate Analogue In Benzoylformate Decarboxyla		2e-06
1mcz_A	528	Benzoylformate Decarboxylase From Pseudomonas Putid		2e-06
2v3w_A	528	Crystal Structure Of The Benzoylformate Decarboxyla		2e-06
2fn3_A	528	High Resolution Structure Of S26a Mutant Of Benzoyl		2e-06
3f6b_X	525	Crystal Structure Of Benzoylformate Decarboxylase I		2e-06
1pi3_A	528	E28q Mutant Benzoylformate Decarboxylase From Pseud		2e-06
1po7_A	528	High Resolution Structure Of E28a Mutant Benzoylfor		2e-06
2fwn_A	528	Phosphorylation Of An Active Site Serine In A Thdp-		2e-06
1pvd_A	555	Crystal Structure Of The Thiamin Diphosphate Depend		6e-06
1pyd_A	556	Catalytic Centers In The Thiamin Diphosphate Depend		6e-06
2w93_A	563	Crystal Structure Of The Saccharomyces Cerevisiae P		8e-06
1qpb_A	563	Pyruvate Decarboyxlase From Yeast (Form B) Complexe		2e-05
2vk8_A	563	Crystal Structure Of The Saccharomyces Cerevisiae P		6e-05
2vk1_A	563	Crystal Structure Of The Saccharomyces Cerevisiae P		6e-05
2vbf_A	570	The Holostructure Of The Branched-Chain Keto Acid D		7e-04

>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex With The Cofactor Derivative Thiamin-2-Thiazolone Diphosphate And Adenosine Diphosphate Length = 568

Iteration: 1
 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 180/473 (38%), Positives = 276/473 (58%), Gaps = 16/473 (3%)
Query: 6   LQNSQNAQI-DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXX 64
           + N  N ++ DG  +   +L +     M+GVVGIP+T+LA      G RF +F +EQ   
Sbjct: 1   MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 65  XXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDF 122
                   + GKPG+ LTVS PG ++G+  L++   N +P++++SGS +++  D  +GD+
Sbjct: 61  YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 123 QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVX 182
           +E+DQ+   +P  K + +   I ++P  +A+ +  AVSGRPGG Y+DLP  +  QTISV 
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVE 180
Query: 183 XXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242
                                    I +A  L+K AK+P+I+ GKGAAYA+ + E++ LV
Sbjct: 181 EANKLLFKPIDPAPAQIP---AEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALV 237
Query: 243 ESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK 302
           E TGIPFLP  M KGLLPD HP +A A R+ A+ QCDV +++GARLNWL+  G+   W  
Sbjct: 238 EETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGD 297
Query: 303 DV-KFVLVDVCKEEIELRKPHLG-LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKK 360
           ++ K+V +D+   E++  +P    +VGD K  + ++ K +K  P     +  W  A+  K
Sbjct: 298 ELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKA---DAEWTGALKAK 354
Query: 361 TKDNVLKMEVQLAKDVVP--FNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLV 418
              N  K+  ++  +      N+   + ++RD +L   +P   LV+EGAN +D  R ++ 
Sbjct: 355 VDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFML--ANPDISLVNEGANALDNTRMIVD 412
Query: 419 QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
             +PR RLD+GTWG MG+G+GYC+AAA A   + V+AVEGDS FGFS +E+E 
Sbjct: 413 MLKPRKRLDSGTWGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELET 464

>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From Escherichia Coli Length = 564

Iteration: 1
 Score =  322 bits (824), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 183/462 (39%), Positives = 271/462 (58%), Gaps = 16/462 (3%)
Query: 15  DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXXLT 74
           DG  +  ++L       ++GVVGIPVT +A  A   G+R+I F +EQ           LT
Sbjct: 9   DGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLT 68
Query: 75  GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELDQVEAVK 132
            KPGI LTVS PG ++GL  L+N  +N +P++MISGS D+   D  +GD++ELDQ+ A K
Sbjct: 69  QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAK 128
Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXX 192
           P++K A +     ++   +A+ +  +VSGRPGG YLDLP +VL  T+             
Sbjct: 129 PYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVE 188
Query: 193 XXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
                +         +  A+SLL +A++PLI+ GKGAAY++A+ +L++ +ES  IPFLP 
Sbjct: 189 NPSPALLP---CPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM 245
Query: 253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312
            M KG+L DTHPL+A AARS A+   DV ++VGARLNWLL  G+   W+ D +F+ +D+ 
Sbjct: 246 SMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIE 304
Query: 313 KEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHP--WVEAIWKKTKDNVLKME 369
            +EI+  +P  + +VGD    ++ +  E+K   F      P  W + +    + N  KM 
Sbjct: 305 PQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTT----PLVWRDILNIHKQQNAQKMH 360
Query: 370 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 429
            +L+ D  P N+   +  +RD +    +    LV+EGANT+D  R ++   +PR RLD G
Sbjct: 361 EKLSTDTQPLNYFNALSAVRDVLR--ENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCG 418
Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           TWG MG+G+GY I A++      VVA+EGDS FGFS +E+E 
Sbjct: 419 TWGVMGIGMGYAIGASVTSGSP-VVAIEGDSAFGFSGMEIET 459

>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide Chlorimuron Ethyl Length = 590

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 194/433 (44%), Gaps = 35/433 (8%)
Query: 52  VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
           +R +   +EQ            +GKPGI +  SGPG  + ++GL++ ++++ P+V I+G 
Sbjct: 51  IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQ 110
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
             ++  G   FQE   VE  +  +K      D+ ++P+ + +    A SGRPG   +D+P
Sbjct: 111 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVP 170
Query: 172 TDVLHQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAY 231
            D+  Q   +               +       +S +++ V L+ E+KKP++  G G   
Sbjct: 171 KDIQQQ---LAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCL- 226
Query: 232 ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVV 284
             +  EL + VE TGIP   T MG G  P    L+        T   + A+   D+ L  
Sbjct: 227 -NSSDELGRFVELTGIPVASTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAF 285
Query: 285 GARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDE 343
           G R +  +  G+   ++   K V +D+   EI   K PH+ + GD K  L+ +NK +++ 
Sbjct: 286 GVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENR 344
Query: 344 PFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMT------PMRIIRDAILGVGS 397
              L  +      +W+         E+ + K   P +F T      P   I+  +L   +
Sbjct: 345 AEELKLDF----GVWRN--------ELNVQKQKFPLSFKTFGEAIPPQYAIK--VLDELT 390
Query: 398 PAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456
               ++S G     +  A      +PR  L +G  G MG GL   I A++A P+ +VV +
Sbjct: 391 DGKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDI 450
Query: 457 EGDSGFGFSAVEV 469
           +GD  F  +  E+
Sbjct: 451 DGDGSFIMNVQEL 463

>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex With Monosulfuron Length = 584

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 194/433 (44%), Gaps = 35/433 (8%)
Query: 52  VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
           +R +   +EQ            +GKPGI +  SGPG  + ++GL++ ++++ P+V I+G 
Sbjct: 50  IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQ 109
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
             ++  G   FQE   VE  +  +K      D+ ++P+ + +    A SGRPG   +D+P
Sbjct: 110 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVP 169
Query: 172 TDVLHQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAY 231
            D+  Q   +               +       +S +++ V L+ E+KKP++  G G   
Sbjct: 170 KDIQQQ---LAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCL- 225
Query: 232 ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVV 284
             +  EL + VE TGIP   T MG G  P    L+        T   + A+   D+ L  
Sbjct: 226 -NSSDELGRFVELTGIPVATTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAF 284
Query: 285 GARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDE 343
           G R +  +  G+   ++   K V +D+   EI   K PH+ + GD K  L+ +NK +++ 
Sbjct: 285 GVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENR 343
Query: 344 PFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMT------PMRIIRDAILGVGS 397
              L  +      +W+         E+ + K   P +F T      P   I+  +L   +
Sbjct: 344 AEELKLDF----GVWRN--------ELNVQKQKFPLSFKTFGEAIPPQYAIK--VLDELT 389
Query: 398 PAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456
               ++S G     +  A      +PR  L +G  G MG GL   I A++A P+ +VV +
Sbjct: 390 DGKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDI 449
Query: 457 EGDSGFGFSAVEV 469
           +GD  F  +  E+
Sbjct: 450 DGDGSFIMNVQEL 462

>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase Length = 616

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 194/458 (42%), Gaps = 31/458 (6%)
Query: 28  GATHMFGVVGIPVTSLANRAVQLG-VRFI-AFHNEQXXXXXXXXXXXLTGKPGILLTVSG 85
           G T  FGV G  +    +   + G +R I A H E              G  G+ L  SG
Sbjct: 41  GITTAFGVPGAAINPFYSAXRKHGGIRHILARHVEGASHXAEGYTRATAGNIGVCLGTSG 100
Query: 86  PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDIT 145
           P     +  L +   ++ PI+ I+G   +    + DFQ +D     KP SK AV  ++  
Sbjct: 101 PAGTDXITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKXAVTVREAA 160
Query: 146 EVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVTQGGIVN 205
            VP+ + Q      SGRPG   +DLP DV    I                 +  Q     
Sbjct: 161 LVPRVLQQAFHLXRSGRPGPVLVDLPFDVQVAEIEFDPDXYEPLPVYKPAASRXQ----- 215
Query: 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
             I+KAV  L +A++P+IV G G   A A   L++  E T +P +PT  G G +PD H L
Sbjct: 216 --IEKAVEXLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLXGWGCIPDDHEL 273
Query: 266 AA------TAAR--SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI- 316
            A      TA R  +  +   D    +G R     H G   K+++  K V +D+   +I 
Sbjct: 274 XAGXVGLQTAHRYGNATLLASDXVFGIGNRFAN-RHTGSVEKYTEGRKIVHIDIEPTQIG 332
Query: 317 ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGK---NHPWVEAIWKKTKDNVLKMEVQLA 373
            +  P LG+V DAK  L ++  E+  E    G+      WV    ++ +  + K      
Sbjct: 333 RVLCPDLGIVSDAKAALTLL-VEVAQEXQKAGRLPCRKEWVADCQQRKRTLLRKTHF--- 388
Query: 374 KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGT 433
            D VP   + P R+  +     G     + + G + +   + + V  + R  ++ G  G 
Sbjct: 389 -DNVP---VKPQRVYEEXNKAFGRDVCYVTTIGLSQIAAAQXLHVFKD-RHWINCGQAGP 443
Query: 434 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           +G  +   +    A P+R VVA+ GD  F F   E+ V
Sbjct: 444 LGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAV 481

>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae Acetolactate Synthase With Enzyme-bound Cofactor And With An Unusual Intermediate Length = 566

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 188/461 (40%), Gaps = 21/461 (4%)
Query: 16  GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXXLTG 75
           G  L    L   G   +FG+ G  +  + +  +   +R I   +E            +TG
Sbjct: 13  GADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITG 72
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
           K G+ L  SGPGC + + G++       P+V + G+  + D  +   Q +D V    P +
Sbjct: 73  KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVT 132
Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXX 195
           K+A++      + + V+     A  GRPG  ++ LP DV+   +S               
Sbjct: 133 KYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVS--------GKVLPAS 184
Query: 196 XTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
                G   +  ID+   L+ +AK P+ + G  A+       L++L+E++ IP   T   
Sbjct: 185 GAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQA 244
Query: 256 KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFG----EPPKW-SKDVKFVLVD 310
            G +   +         L   Q    L+  A L   + +     EP  W S +   V +D
Sbjct: 245 AGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWNSGNATLVHID 304
Query: 311 VCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKME 369
           V     E    P + LVGD    L  + + I D    L      +    +  ++ + +  
Sbjct: 305 VLPAYEERNYTPDVELVGDIAGTLNKLAQNI-DHRLVLSPQAAEILRDRQHQRELLDRRG 363
Query: 370 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 429
            QL +       + P+RI+R     V S   + V  G+  + + R  L     R  + + 
Sbjct: 364 AQLNQFA-----LHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIAR-YLYTFRARQVMISN 417
Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
              TMGV L + I A +  PER VV+V GD GF  S++E+E
Sbjct: 418 GQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELE 458

>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast Acetohydroxyacid Synthase: A Target For Herbicidal Inhibitors Length = 630

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 186/455 (40%), Gaps = 64/455 (14%)
Query: 53  RFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSC 112
            F+   +EQ            +GKPG++L  SGPG  + +  +++   +  P+V+ +G  
Sbjct: 75  NFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQV 134
Query: 113 DQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172
                G   FQE D V   +  +K+ V  K + E+P  + +  E A SGRPG   +DLP 
Sbjct: 135 PTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 194
Query: 173 DVLHQTIS--VXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA- 229
           DV    +   +               +  Q   V   I+KA  L+  AKKP++  G G  
Sbjct: 195 DVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGIL 254
Query: 230 AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVAL 282
            +A     LK+L +   IP   T  G G      P       +   A  +LA+   D+ +
Sbjct: 255 NHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLII 314
Query: 283 VVGARLNWLLHFGEPPKWSKDVK---------FVLVDVCKEEI-ELRKPHLGLVGDAKKV 332
            VGAR +  +  G   K++ + +          +  +V  + I ++ +  + + GDA   
Sbjct: 315 AVGARFDDRV-TGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTN 373
Query: 333 LEMINKEIKDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRD 390
           L  +  +I    F + +   W   I  WKK        E        P + + P  +I+ 
Sbjct: 374 LGKMMSKI----FPVKERSEWFAQINKWKKEYPYAYMEE-------TPGSKIKPQTVIKK 422
Query: 391 AILGVGSPAPILVSEGANTMDVGRAVLVQT----------------EPRCRLDAGTWGTM 434
                       +S+ AN  D GR V+V T                 P   + +G  GTM
Sbjct: 423 ------------LSKVAN--DTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTM 468
Query: 435 GVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
           G GL   I A +A PE LV+ ++GD+ F  +  E+
Sbjct: 469 GYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTEL 503

>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl Length = 677

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 186/455 (40%), Gaps = 64/455 (14%)
Query: 53  RFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSC 112
            F+   +EQ            +GKPG++L  SGPG  + +  +++   +  P+V+ +G  
Sbjct: 122 NFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQV 181
Query: 113 DQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172
                G   FQE D V   +  +K+ V  K + E+P  + +  E A SGRPG   +DLP 
Sbjct: 182 PTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241
Query: 173 DVLHQTIS--VXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA- 229
           DV    +   +               +  Q   V   I+KA  L+  AKKP++  G G  
Sbjct: 242 DVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGIL 301
Query: 230 AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVAL 282
            +A     LK+L +   IP   T  G G      P       +   A  +LA+   D+ +
Sbjct: 302 NHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLII 361
Query: 283 VVGARLNWLLHFGEPPKWSKDVK---------FVLVDVCKEEI-ELRKPHLGLVGDAKKV 332
            VGAR +  +  G   K++ + +          +  +V  + I ++ +  + + GDA   
Sbjct: 362 AVGARFDDRV-TGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTN 420
Query: 333 LEMINKEIKDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRD 390
           L  +  +I    F + +   W   I  WKK        E        P + + P  +I+ 
Sbjct: 421 LGKMMSKI----FPVKERSEWFAQINKWKKEYPYAYMEE-------TPGSKIKPQTVIKK 469
Query: 391 AILGVGSPAPILVSEGANTMDVGRAVLVQT----------------EPRCRLDAGTWGTM 434
                       +S+ AN  D GR V+V T                 P   + +G  GTM
Sbjct: 470 ------------LSKVAN--DTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTM 515
Query: 435 GVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
           G GL   I A +A PE LV+ ++GD+ F  +  E+
Sbjct: 516 GYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTEL 550

>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum Length = 585

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 197/460 (42%), Gaps = 49/460 (10%)
Query: 22  KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           K L  +G  H++G+ G  + S+ +   A +  + +I   +E+           LTGK G+
Sbjct: 11  KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 70
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
               +GPG  H + GL +   +  P++ + G           FQE+++       + + V
Sbjct: 71  CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 130
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
            A +   +P  + + + RA + + G   + +P D+  Q IS                   
Sbjct: 131 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQISAEDWYASANNY-------- 181
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
           Q  ++     +AV+ L +    A++PLI +G GA   +A  EL++L ++  IP + T   
Sbjct: 182 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 239
Query: 256 KGLLPDTHPLAATAARSL-------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308
           KG++ D +P    +A  +       A+ Q DV L VG        F E  K  K+ ++ L
Sbjct: 240 KGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 295
Query: 309 -VDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL 366
            +D+   ++  R K  + ++ DA+K L  I  ++ +      ++ PW    W+    NV 
Sbjct: 296 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSER-----ESTPW----WQANLANVK 346
Query: 367 KMEVQLA----KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTE 421
                LA    K   P      +R    A+  +  P  I  +  G   ++  R + +   
Sbjct: 347 NWRAYLASLEDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPS 402
Query: 422 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
            R  + +  + TMGVG+   IAA +  PER V  + GD G
Sbjct: 403 NR-HITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGG 441

>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus Plantarum Length = 603

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 115/482 (23%), Positives = 205/482 (42%), Gaps = 53/482 (10%)
Query: 22  KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           K L  +G  H++G+ G  + S+ +   A +  + +I   +E+           LTGK G+
Sbjct: 19  KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 78
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
               +GPG  H + GL +   +  P++ + G           FQE+++       + + V
Sbjct: 79  CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 138
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
            A +   +P  + + + RA + + G   + +P D+  Q I                    
Sbjct: 139 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPA--------EDWYASANSY 189
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
           Q  ++     +AV+ L +    A++PLI +G GA   +A  EL++L ++  IP + T   
Sbjct: 190 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 247
Query: 256 KGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308
           KG++ D +P        AA    + A+ Q DV L VG        F E  K  K+ ++ L
Sbjct: 248 KGIVADRYPAYLGSANRAAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 303
Query: 309 -VDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL 366
            +D+   ++  R K  + ++ DA+K L  I  ++ +      ++ PW    W+    NV 
Sbjct: 304 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSER-----ESTPW----WQANLANVK 354
Query: 367 KMEVQLA----KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTE 421
                LA    K   P      +R    A+  +  P  I  +  G   ++  R + +   
Sbjct: 355 NWRAYLASLEDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPS 410
Query: 422 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCII 477
            R  + +  + TMGVG+   IAA +  PER V  + GD G   +    A +V+  L  I 
Sbjct: 411 NR-HITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVIN 469
Query: 478 MI 479
           ++
Sbjct: 470 VV 471

>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum Length = 585

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 205/482 (42%), Gaps = 53/482 (10%)
Query: 22  KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           K L  +G  H++G+ G  + S+ +   A +  + +I   +E+           LTGK G+
Sbjct: 11  KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 70
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
               +GPG  H + GL +   +  P++ + G           FQE+++       + + V
Sbjct: 71  CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 130
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
            A +   +P  + + + RA + + G   + +P D+  Q I                    
Sbjct: 131 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPA--------EDWYASANSY 181
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
           Q  ++     +AV+ L +    A++PLI +G GA   +A  EL++L ++  IP + T   
Sbjct: 182 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 239
Query: 256 KGLLPDTHPLAATAARSL-------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308
           KG++ D +P    +A  +       A+ Q DV L VG        F E  K  K+ ++ L
Sbjct: 240 KGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 295
Query: 309 -VDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL 366
            +D+   ++  R K  + ++ DA+K L  I  ++ +      ++ PW    W+    NV 
Sbjct: 296 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSER-----ESTPW----WQANLANVK 346
Query: 367 KMEVQLA----KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTE 421
                LA    K   P      +R    A+  +  P  I  +  G   ++  R + +   
Sbjct: 347 NWRAYLASLEDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPS 402
Query: 422 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCII 477
            R  + +  + TMGVG+   IAA +  PER V  + GD G   +    A +V+  L  I 
Sbjct: 403 NR-HITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVIN 461
Query: 478 MI 479
           ++
Sbjct: 462 VV 463

>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w Length = 603

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 205/482 (42%), Gaps = 53/482 (10%)
Query: 22  KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           K L  +G  H++G+ G  + S+ +   A +  + +I   +E+           LTGK G+
Sbjct: 19  KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 78
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
               +GPG  H + GL +   +  P++ + G           FQE+++       + + V
Sbjct: 79  CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 138
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
            A +   +P  + + + RA + + G   + +P D+  Q I                    
Sbjct: 139 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPA--------EDWYASANSY 189
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
           Q  ++     +AV+ L +    A++PLI +G GA   +A  EL++L ++  IP + T   
Sbjct: 190 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 247
Query: 256 KGLLPDTHPLAATAARSL-------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308
           KG++ D +P    +A  +       A+ Q DV L VG        F E  K  K+ ++ L
Sbjct: 248 KGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 303
Query: 309 -VDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL 366
            +D+   ++  R K  + ++ DA+K L  I  ++ +      ++ PW    W+    NV 
Sbjct: 304 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSER-----ESTPW----WQANLANVK 354
Query: 367 KMEVQLA----KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTE 421
                LA    K   P      +R    A+  +  P  I  +  G   ++  R + +   
Sbjct: 355 NWRAYLASLEDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPS 410
Query: 422 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCII 477
            R  + +  + TMGVG+   IAA +  PER V  + GD G   +    A +V+  L  I 
Sbjct: 411 NR-HITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVIN 469
Query: 478 MI 479
           ++
Sbjct: 470 VV 471

>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex With Reaction Intermediate 2-Hydroxyethyl-Thiamin Diphosphate Carbanion-Enamine, Crystal B Length = 603

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 205/482 (42%), Gaps = 53/482 (10%)
Query: 22  KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           K L  +G  H++G+ G  + S+ +   A +  + +I   +E+           LTGK G+
Sbjct: 19  KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 78
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
               +GPG  H + GL +   +  P++ + G           FQE+++       + + V
Sbjct: 79  CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 138
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
            A +   +P  + + + RA + + G   + +P D+  Q I                    
Sbjct: 139 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPA--------EDWYASANSY 189
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
           Q  ++     +AV+ L +    A++PLI +G GA   +A  EL++L ++  IP + T   
Sbjct: 190 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 247
Query: 256 KGLLPDTHPLAATAARSL-------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308
           KG++ D +P    +A  +       A+ Q DV L VG        F E  K  K+ ++ L
Sbjct: 248 KGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 303
Query: 309 -VDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL 366
            +D+   ++  R K  + ++ DA+K L  I  ++ +      ++ PW    W+    NV 
Sbjct: 304 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSER-----ESTPW----WQANLANVK 354
Query: 367 KMEVQLA----KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTE 421
                LA    K   P      +R    A+  +  P  I  +  G   ++  R + +   
Sbjct: 355 NWRAYLASLEDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPS 410
Query: 422 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCII 477
            R  + +  + TMGVG+   IAA +  PER V  + GD G   +    A +V+  L  I 
Sbjct: 411 NR-HITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVIN 469
Query: 478 MI 479
           ++
Sbjct: 470 VV 471

>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With The Inhibitor Mbp Length = 570

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 194/476 (40%), Gaps = 35/476 (7%)
Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
           A I G  L  ++L   G  H+FG+ G  + ++    +   V  I   +E           
Sbjct: 2   AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72  XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
               K G+ L  +G G  + +  ++N  ++  P++ ++GS   +D      Q  +DQV  
Sbjct: 62  RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
             P +K+A +      +P+ V Q +  A+S   G   LDLP D+L   I           
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
                          +D+D+A++LL++A++P+IV G  A+    +  L   V +TG+P  
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGAR--LNWLLHFGE 296
                      LP  M  GL+ + +  A   A        D+ L++GAR  LN     G+
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARFGLNTGHGSGQ 290
Query: 297 PPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA 356
               S  V  V  D C E   L+   LG+V D    +E + +    +     +   W   
Sbjct: 291 LIPHSAQVIQVDPDAC-ELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGD-WCAK 348
Query: 357 IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV 416
           +    ++    +  + + +     F     I +    GV      +V++GA T      V
Sbjct: 349 VTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGV-----TVVADGALTYLWLSEV 403
Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGDSGFGFSAVEVE 470
           + + +P   L  G  G+MGVG G  + A +A  E  R  + V GD   G+S  E +
Sbjct: 404 MSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFD 459

>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed With 2-Methyl-2,4-Pentanediol Length = 563

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 194/476 (40%), Gaps = 35/476 (7%)
Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
           A I G  L  ++L   G  H+FG+ G  + ++    +   V  I   +E           
Sbjct: 2   AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72  XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
               K G+ L  +G G  + +  ++N  ++  P++ ++GS   +D      Q  +DQV  
Sbjct: 62  RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
             P +K+A +      +P+ V Q +  A+S   G   LDLP D+L   I           
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
                          +D+D+A++LL++A++P+IV G  A+    +  L   V +TG+P  
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGAR--LNWLLHFGE 296
                      LP  M  GL+ + +  A   A        D+ L++GAR  LN     G+
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARFGLNTGHGSGQ 290
Query: 297 PPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA 356
               S  V  V  D C E   L+   LG+V D    +E + +    +     +   W   
Sbjct: 291 LIPHSAQVIQVDPDAC-ELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGD-WCAK 348
Query: 357 IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV 416
           +    ++    +  + + +     F     I +    GV      +V++GA T      V
Sbjct: 349 VTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGV-----TVVADGALTYLWLSEV 403
Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGDSGFGFSAVEVE 470
           + + +P   L  G  G+MGVG G  + A +A  E  R  + V GD   G+S  E +
Sbjct: 404 MSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFD 459

>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With Benzoylphosphonate Length = 570

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 194/476 (40%), Gaps = 35/476 (7%)
Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
           A I G  L  ++L   G  H+FG+ G  + ++    +   V  I   +E           
Sbjct: 2   AMITGGELVVRTLIKAGVEHLFGLHGSHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72  XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
               K G+ L  +G G  + +  ++N  ++  P++ ++GS   +D      Q  +DQV  
Sbjct: 62  RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
             P +K+A +      +P+ V Q +  A+S   G   LDLP D+L   I           
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
                          +D+D+A++LL++A++P+IV G  A+    +  L   V +TG+P  
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGAR--LNWLLHFGE 296
                      LP  M  GL+ + +  A   A        D+ L++GAR  LN     G+
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARFGLNTGHGSGQ 290
Query: 297 PPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA 356
               S  V  V  D C E   L+   LG+V D    +E + +    +     +   W   
Sbjct: 291 LIPHSAQVIQVDPDAC-ELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGD-WCAK 348
Query: 357 IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV 416
           +    ++    +  + + +     F     I +    GV      +V++GA T      V
Sbjct: 349 VTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGV-----TVVADGALTYLWLSEV 403
Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGDSGFGFSAVEVE 470
           + + +P   L  G  G+MGVG G  + A +A  E  R  + V GD   G+S  E +
Sbjct: 404 MSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFD 459

>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native Length = 563

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 194/476 (40%), Gaps = 35/476 (7%)
Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
           A I G  L  ++L   G  H+FG+ G  + ++    +   V  I   +E           
Sbjct: 2   AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72  XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
               K G+ L  +G G  + +  ++N  ++  P++ ++GS   +D      Q  +DQV  
Sbjct: 62  RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
             P +K+A +      +P+ V Q +  A+S   G   LDLP D+L   I           
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
                          +D+D+A++LL++A++P+IV G  A+    +  L   V +TG+P  
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGAR--LNWLLHFGE 296
                      LP  M  GL+ + +  A   A        D+ L++GAR  LN     G+
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARFGLNTGHGSGQ 290
Query: 297 PPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA 356
               S  V  V  D C E   L+   LG+V D    +E + +    +     +   W   
Sbjct: 291 LIPHSAQVIQVDPDAC-ELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGD-WCAK 348
Query: 357 IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV 416
           +    ++    +  + + +     F     I +    GV      +V++GA T      V
Sbjct: 349 VTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGV-----TVVADGALTYLWLSEV 403
Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGDSGFGFSAVEVE 470
           + + +P   L  G  G+MGVG G  + A +A  E  R  + V GD   G+S  E +
Sbjct: 404 MSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFD 459

>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With Monomethyl Benzoylphosphonate Length = 570

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 194/476 (40%), Gaps = 35/476 (7%)
Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
           A I G  L  ++L   G  H+FG+ G  + ++    +   V  I   +E           
Sbjct: 2   AMITGGELVVRTLIKAGVEHLFGLHGXHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72  XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
               K G+ L  +G G  + +  ++N  ++  P++ ++GS   +D      Q  +DQV  
Sbjct: 62  RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
             P +K+A +      +P+ V Q +  A+S   G   LDLP D+L   I           
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
                          +D+D+A++LL++A++P+IV G  A+    +  L   V +TG+P  
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGAR--LNWLLHFGE 296
                      LP  M  GL+ + +  A   A        D+ L++GAR  LN     G+
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARFGLNTGHGSGQ 290
Query: 297 PPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA 356
               S  V  V  D C E   L+   LG+V D    +E + +    +     +   W   
Sbjct: 291 LIPHSAQVIQVDPDAC-ELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGD-WCAK 348
Query: 357 IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV 416
           +    ++    +  + + +     F     I +    GV      +V++GA T      V
Sbjct: 349 VTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGV-----TVVADGALTYLWLSEV 403
Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGDSGFGFSAVEVE 470
           + + +P   L  G  G+MGVG G  + A +A  E  R  + V GD   G+S  E +
Sbjct: 404 MSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFD 459

>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet Length = 563

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 190/476 (39%), Gaps = 35/476 (7%)
Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
           A I G  L  ++L   G  H+FG+ G  + ++    +   V  I   +E           
Sbjct: 2   AXITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72  XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
               K G+ L  +G G  + +  ++N  ++  P++ ++GS   +D      Q  +DQV  
Sbjct: 62  RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAX 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
             P +K+A +      +P+ V Q +  A+S   G   LDLP D+L   I           
Sbjct: 122 AAPITKWAHRVXATEHIPRLVXQAIRAALSAPRGPVLLDLPWDILXNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
                          +D+D+A++LL++A++P+IV G  A+    +  L   V +TG+P  
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGAR--LNWLLHFGE 296
                      LP     GL+ + +  A   A        D+ L +GAR  LN     G+
Sbjct: 237 ADYEGLSXLSGLPDAXRGGLVQNLYSFAKADAAP------DLVLXLGARFGLNTGHGSGQ 290
Query: 297 PPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA 356
               S  V  V  D C E   L+   LG+V D    +E + +    +     +   W   
Sbjct: 291 LIPHSAQVIQVDPDAC-ELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGD-WCAK 348
Query: 357 IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV 416
           +    ++    +  + + +     F     I +    GV      +V++GA T      V
Sbjct: 349 VTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGV-----TVVADGALTYLWLSEV 403
Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGDSGFGFSAVEVE 470
             + +P   L  G  G+ GVG G  + A +A  E  R  + V GD   G+S  E +
Sbjct: 404 XSRVKPGGFLCHGYLGSXGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFD 459

>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent Cyclohexane-1,2-Dione Hydrolase In Complex With Cyclohexane-1,2-Dione Length = 589

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 165/402 (41%), Gaps = 48/402 (11%)
Query: 104 PIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163
           P V I  + D +  GR +  +    ++  P ++   + + + +V + + +   R   G P
Sbjct: 96  PAVHIGLNSDGRLAGRSEAAQQVPWQSFTPIARSTQRVERLDKVGEAIHEAF-RVAEGHP 154
Query: 164 GG-CYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPL 222
            G  Y+D+P D+    I                         N D+ +A + L  AK P+
Sbjct: 155 AGPAYVDIPFDLTADQIDDKALVPRGATRAKSVLHAP-----NEDVREAAAQLVAAKNPV 209
Query: 223 IVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA-------RSLAI 275
           I+ G G A +     L KL E  G+P + T  G G+ P+TH LA  +A        +  +
Sbjct: 210 ILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMM 269
Query: 276 GQCDVALVVGARL-NWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVL 333
              D  LV+G+RL +W +  G     +K  KFV VD     +     P L +V DAK  +
Sbjct: 270 AAADFVLVLGSRLSDWGIAQG---YITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFM 326
Query: 334 EMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLK-----------MEVQLAKDVVPFNFM 382
           E +   I+  P   G      +A+  + ++N  +           +  Q + D +P +  
Sbjct: 327 EQL---IEVLPGTSG-----FKAVRYQERENFRQATEFRAAWDGWVREQESGDGMPASMF 378
Query: 383 TPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYC 441
             M  +R     V  P  I+V++ G +T+ +    ++Q  PR  + +   G +G G    
Sbjct: 379 RAMAEVRK----VQRPEDIIVTDIGNHTLPMFGGAILQ-RPRRLVTSMAEGILGCGFPMA 433
Query: 442 IAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCIIMI 479
           + A +A P   V    GD    +      V VE  L  I M+
Sbjct: 434 LGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMV 475

>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad And Tpp, From Aerococcus Viridans Length = 589

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 12/235 (5%)
Query: 22  KSLSLFGATHMFGVVGIPVTSLANR--AVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           K L  +GA  ++G+    ++SL +     +  V+F+   +E+             G  G+
Sbjct: 11  KILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGV 70
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
            +   GPG  H + GL +  ++  P+V I GS  Q++     FQEL+Q       + +  
Sbjct: 71  TVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNR 130
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
           +     ++PK V +    A++ R G   L++P D     I                    
Sbjct: 131 RVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSANSLRKYAPIAP 189
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLI-----VFGKGAAYARAEGELKKLVESTGIPF 249
                  DID AV LL  +K+P+I       G G A      ++K  V +TG  F
Sbjct: 190 AA----QDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNF 240

>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From Aerococcus Viridans Length = 590

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 12/235 (5%)
Query: 22  KSLSLFGATHMFGVVGIPVTSLANR--AVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           K L  +GA  ++G+    ++SL +     +  V+F+   +E+             G  G+
Sbjct: 12  KILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGV 71
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
            +   GPG  H + GL +  ++  P+V I GS  Q++     FQEL+Q       + +  
Sbjct: 72  TVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNR 131
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
           +     ++PK V +    A++ R G   L++P D     I                    
Sbjct: 132 RVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSANSLRKYAPIAP 190
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLI-----VFGKGAAYARAEGELKKLVESTGIPF 249
                  DID AV LL  +K+P+I       G G A      ++K  V +TG  F
Sbjct: 191 AA----QDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNF 241

>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces Clavuligerus Length = 573

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 174/447 (38%), Gaps = 47/447 (10%)
Query: 51  GVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
           G+ F+   +E            +TG+P       GPG  +   G++  +++  P++ ++ 
Sbjct: 48  GIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAA 107
Query: 111 SCDQKD-FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169
             +  D F     Q LD V  V P SK+AV+ +   E+   V   +  A++   G  ++ 
Sbjct: 108 QSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFIS 167
Query: 170 LPTDVL--HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGK 227
           LP D+L   + I                  V  G    +D  +A +LL EAK P++V G 
Sbjct: 168 LPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAAD--QAAALLAEAKHPVLVVGA 225
Query: 228 GAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA------------ARSLAI 275
            A  + A   ++ L E   IP + T + KG+LP  H L   A            A     
Sbjct: 226 AAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMF 285
Query: 276 GQCDVALVVGARLNWLLHFGEPPKWSKDV--KFVLVDVCKEEI-ELRKPHLGLVGDAKKV 332
              D+ L VG      L    P  W K +  K V +      I  + +P + +V D    
Sbjct: 286 APVDLVLTVGYDYAEDL---RPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAF 342
Query: 333 LEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVV-PFNFMTPMRI--IR 389
           +E                     +   K + ++  +  ++A+ +  P  +   MR+  + 
Sbjct: 343 VEHFETATA--------------SFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVI 388
Query: 390 DAILGVGSPAPILVSEGANTMDVG----RAVLV--QTEPRCRLDAGTWGTMGVGLGYCIA 443
           D++  V   A     EG    D+G      VL     +P   L +    + G G+   I 
Sbjct: 389 DSMNTVMEEA-AEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIG 447
Query: 444 AAIACPERLVVAVEGDSGFGFSAVEVE 470
           A +A P++    + GD GF  ++ ++E
Sbjct: 448 AQMARPDQPTFLIAGDGGFHSNSSDLE 474

>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces Clavuligerus (semet Structure) Length = 573

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 170/447 (38%), Gaps = 47/447 (10%)
Query: 51  GVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
           G+ F+   +E            +TG+P       GPG  +   G++  +++  P++ ++ 
Sbjct: 48  GIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGXTNLSTGIATSVLDRSPVIALAA 107
Query: 111 SCDQKD-FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169
             +  D F     Q LD V  V P SK+AV+ +   E+   V   +  A +   G  ++ 
Sbjct: 108 QSESHDIFPNDTHQCLDSVAIVAPXSKYAVELQRPHEITDLVDSAVNAAXTEPVGPSFIS 167
Query: 170 LPTDVL--HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGK 227
           LP D+L   + I                  V  G    +D  +A +LL EAK P++V G 
Sbjct: 168 LPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAAD--QAAALLAEAKHPVLVVGA 225
Query: 228 GAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA------------ARSLAI 275
            A  + A   ++ L E   IP + T + KG+LP  H L   A            A     
Sbjct: 226 AAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYXDGILNFPALQTXF 285
Query: 276 GQCDVALVVGARLNWLLHFGEPPKWSKDV--KFVLVDVCKEEI-ELRKPHLGLVGDAKKV 332
              D+ L VG      L    P  W K +  K V +      I  + +P + +V D    
Sbjct: 286 APVDLVLTVGYDYAEDL---RPSXWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAF 342
Query: 333 LEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVV-PFNFMTPMRI--IR 389
           +E                     +   K + ++  +  ++A+ +  P  +    R+  + 
Sbjct: 343 VEHFETATA--------------SFGAKQRHDIEPLRARIAEFLADPETYEDGXRVHQVI 388
Query: 390 DAILGVGSPAPILVSEGANTMDVG----RAVLV--QTEPRCRLDAGTWGTMGVGLGYCIA 443
           D+   V   A     EG    D+G      VL     +P   L +    + G G+   I 
Sbjct: 389 DSXNTVXEEA-AEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIG 447
Query: 444 AAIACPERLVVAVEGDSGFGFSAVEVE 470
           A  A P++    + GD GF  ++ ++E
Sbjct: 448 AQXARPDQPTFLIAGDGGFHSNSSDLE 474

>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In Complex With The Substrate Analogue Methyl Acetylphosphonate Length = 563

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
            G GDF    ++ +    S+      DI   P  + + +    VS RP   YL LP +++
Sbjct: 117 LGNGDFTVFHRMSS--NISETTAMITDINTAPAEIDRCIRTTYVSQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
             T+                    +  +    I+  + L+KEAK P+I+     +   A+
Sbjct: 173 DLTVPASLLDTPIDLSLKPNDPEAEEEV----IENVLQLIKEAKNPVILADACCSRHDAK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP---------LAATAARSLAIGQCDVALVVGA 286
            E KKL++ T  P   TPMGKG + + HP         L++ A +  A+   D+ L VGA
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEKHPRFGGVYVGTLSSPAVKE-AVESADLVLSVGA 287
Query: 287 RLN 289
            L+
Sbjct: 288 LLS 290

>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic Activation Of The Peripheral Membrane Enzyme Pyruvate Oxidase From Escherichia Coli Length = 549

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 106/491 (21%), Positives = 192/491 (39%), Gaps = 67/491 (13%)
Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           AK+L   G   ++GV G  +  L++   ++G + +++  +E+           L+G+  +
Sbjct: 10  AKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAV 69
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
                GPG +H + GL +   N  P++ I+      + G G FQE    E  +  S +  
Sbjct: 70  CAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCE 129
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
                 ++P+ +A  + +AV  R G   + LP DV    +                  VT
Sbjct: 130 LVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDV---ALKPAPEGATMHWYHAPQPVVT 185
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG---IPFLPTPMGK 256
                  ++ K   LL+ +    ++ G G A     G  K+LVE  G    P +    GK
Sbjct: 186 PE---EEELRKLAQLLRYSSNIALMCGSGCA-----GAHKELVEFAGKIKAPIVHALRGK 237
Query: 257 GLLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV 309
             +   +P       L   ++    +   D  +++G +  +   +        D K + +
Sbjct: 238 EHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFY------PTDAKIIQI 291
Query: 310 DVCKEEIELR-KPHLGLVGDAKKVLEM---INKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           D+    I    K  + LVGD K  L     + +E  D  F       + +A  +K  D++
Sbjct: 292 DINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDA--RKGLDDL 349
Query: 366 LKMEVQ------LAKDVVPFNFMTPMRIIRDAIL--GVGSPAPILVSEGANTMDVGRAVL 417
            K   +      LA+ +  F          DAI    VG+P          T+   R + 
Sbjct: 350 AKPSEKAIHPQYLAQQISHF-------AADDAIFTCDVGTP----------TVWAARYLK 392
Query: 418 VQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFG------FSAVEVEV 471
           +  + R  L +   G+M   +   + A    PER VVA+ GD GF        S V++++
Sbjct: 393 MNGKRRL-LGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKL 451
Query: 472 WLSCIIMISSI 482
            +  ++  +S+
Sbjct: 452 PVKIVVFNNSV 462

>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic Activation Of The Peripheral Membrane Enzyme Pyruvate Oxidase From Escherichia Coli Length = 572

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 106/491 (21%), Positives = 192/491 (39%), Gaps = 67/491 (13%)
Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
           AK+L   G   ++GV G  +  L++   ++G + +++  +E+           L+G+  +
Sbjct: 10  AKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAV 69
Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
                GPG +H + GL +   N  P++ I+      + G G FQE    E  +  S +  
Sbjct: 70  CAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCE 129
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
                 ++P+ +A  + +AV  R G   + LP DV    +                  VT
Sbjct: 130 LVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDV---ALKPAPEGATMHWYHAPQPVVT 185
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG---IPFLPTPMGK 256
                  ++ K   LL+ +    ++ G G A     G  K+LVE  G    P +    GK
Sbjct: 186 PE---EEELRKLAQLLRYSSNIALMCGSGCA-----GAHKELVEFAGKIKAPIVHALRGK 237
Query: 257 GLLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV 309
             +   +P       L   ++    +   D  +++G +  +   +        D K + +
Sbjct: 238 EHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFY------PTDAKIIQI 291
Query: 310 DVCKEEIELR-KPHLGLVGDAKKVLEM---INKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           D+    I    K  + LVGD K  L     + +E  D  F       + +A  +K  D++
Sbjct: 292 DINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDA--RKGLDDL 349
Query: 366 LKMEVQ------LAKDVVPFNFMTPMRIIRDAIL--GVGSPAPILVSEGANTMDVGRAVL 417
            K   +      LA+ +  F          DAI    VG+P          T+   R + 
Sbjct: 350 AKPSEKAIHPQYLAQQISHF-------AADDAIFTCDVGTP----------TVWAARYLK 392
Query: 418 VQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFG------FSAVEVEV 471
           +  + R  L +   G+M   +   + A    PER VVA+ GD GF        S V++++
Sbjct: 393 MNGKRRL-LGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKL 451
Query: 472 WLSCIIMISSI 482
            +  ++  +S+
Sbjct: 452 PVKIVVFNNSV 462

>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With Thiamine Thiazolone Diphosphate Length = 527

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 62  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 121
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 122 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 181
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 182 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 235
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 236 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 293
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 294 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 349
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 350 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 387
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 388 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 433

>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase Length = 534

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 63  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 294
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 295 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 350
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 351 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 388
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 389 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 434

>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With An Inhibitor, R-Mandelate Length = 528

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 63  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 294
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 295 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 350
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 351 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 388
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 389 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 434

>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase Variant L461a From Pseudomonas Putida Length = 528

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 63  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 294
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 295 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 350
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 351 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 388
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 389 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 434

>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With Thiamine Thiazolone Diphosphate Length = 528

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 63  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 294
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 295 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 350
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 351 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 388
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 389 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 434

>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In Complex With The Pyridyl Inhibitor Paa Length = 525

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 62  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 121
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 122 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 181
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 182 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 235
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 236 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 293
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 294 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 349
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 350 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 387
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 388 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 433

>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Length = 528

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 63  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 294
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 295 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 350
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 351 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 388
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 389 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 434

>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Length = 528

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 63  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 294
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 295 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 350
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 351 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 388
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 389 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 434

>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp- Dependent Enzyme By Phosphonate Inactivation Length = 528

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 143/406 (35%), Gaps = 50/406 (12%)
Query: 76  KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
           KP  +   S  G  + +  LSN   +  P+++ +G   +   G       +D     +P 
Sbjct: 63  KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
            K++ +     EVP  +++ +  A     G  YL +P D   +                 
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
                Q      D+D  V  L  A  P IV G     A A  +   L E    P    P 
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307
             +   P  HP       A  AA S  +   DV LV+GA + +  H  +P ++ K     
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKP-GTR 294
Query: 308 LVDVCKEEIELRKPHLG--LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNV 365
           L+ V  + +E  +  +G  +V D   +   +   +++      +  P       K   + 
Sbjct: 295 LISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES----SRQLPTAAPEPAKVDQDA 350
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCR 425
            ++  +   D +  N M P                    E A  ++   +   Q   R  
Sbjct: 351 GRLHPETVFDTL--NDMAP--------------------ENAIYLNESTSTTAQMWQRLN 388
Query: 426 L-DAGTW-----GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
           + + G++     G +G  L   I   +A PER V+AV GD    +S
Sbjct: 389 MRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYS 434

>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent Enzyme Pyruvate Decarboxylase From The Yeast Saccharomyces Cerevisiae At 2.3 Angstroms Resolution Length = 555

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
            G GDF    ++ A    S+      DI   P  + + +    V+ RP   YL LP +++
Sbjct: 116 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 171
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
              +                   ++  +    ID  ++L+K+AK P+I+     +    +
Sbjct: 172 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILALVKDAKNPVILADACCSRHDVK 227
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
            E KKL++ T  P   TPMGKG + + HP        T ++     A+   D+ L VGA 
Sbjct: 228 AETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 287
Query: 288 LN 289
           L+
Sbjct: 288 LS 289

>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent Enzyme Pyruvate Decarboxylase At 2.4 Angstroms Resolution Length = 556

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
            G GDF    ++ A    S+      DI   P  + + +    V+ RP   YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
              +                   ++  +    ID  ++L+K+AK P+I+     +    +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILALVKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
            E KKL++ T  P   TPMGKG + + HP        T ++     A+   D+ L VGA 
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
           L+
Sbjct: 289 LS 290

>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant E477q In Complex With The Surrogate Pyruvamide Length = 563

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
            G GDF    ++ A    S+      DI   P  + + +    V+ RP   YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
              +                   ++  +    ID  ++L+K+AK P+I+     +    +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILALVKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
            E KKL++ T  P   TPMGKG + + HP        T ++     A+   D+ L VGA 
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
           L+
Sbjct: 289 LS 290

>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With Pyruvamide Length = 563

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
            G GDF    ++ A    S+      DI   P  + + +    V+ RP   YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
              +                   ++  +    ID  + L+K+AK P+I+     +    +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILVLIKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
            E KKL++ T  P   TPMGKG + + HP        T ++     A+   D+ L VGA 
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
           L+
Sbjct: 289 LS 290

>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant E477q In Complex With Its Substrate Length = 563

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
            G GDF    ++ A    S+      DI   P  + + +    V+ RP   YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
              +                   ++  +    ID  + L K+AK P+I+     +    +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILVLDKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
            E KKL++ T  P   TPMGKG + + HP        T ++     A+   D+ L VGA 
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
           L+
Sbjct: 289 LS 290

>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant D28a In Complex With Its Substrate Length = 563

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
            G GDF    ++ A    S+      DI   P  + + +    V+ RP   YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
              +                   ++  +    ID  + L K+AK P+I+     +    +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILVLDKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
            E KKL++ T  P   TPMGKG + + HP        T ++     A+   D+ L VGA 
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
           L+
Sbjct: 289 LS 290

>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid Decarboxylase (Kdca) From Lactococcus Lactis Length = 570

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 23/202 (11%)
Query: 74  TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK----------DFGRGDFQ 123
           T K    LT  G G +  + GL+       P+V I GS   K              GDF+
Sbjct: 85  TKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFK 144
Query: 124 ELDQVEAVKPFSKFAVKAKDIT-EVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVX 182
              ++      ++  + A++ T E+ + ++Q+L+     +P   Y++LP DV     +  
Sbjct: 145 HFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKER---KP--VYINLPVDV----AAAK 195
Query: 183 XXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242
                         T T   ++ S I+++   LK A+KP+++ G        E  + + V
Sbjct: 196 AEKPALSLEKESSTTNTTEQVILSKIEES---LKNAQKPVVIAGHEVISFGLEKTVTQFV 252
Query: 243 ESTGIPFLPTPMGKGLLPDTHP 264
             T +P      GK  + ++ P
Sbjct: 253 SETKLPITTLNFGKSAVDESLP 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	482
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	1e-130
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	1e-121
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	6e-64
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	2e-63
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	8e-63
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	7e-61
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	1e-60
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	1e-59
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	5e-58
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	2e-55
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	2e-53
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	1e-52
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	2e-50
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	4e-50
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	1e-49
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	3e-48
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	8e-48
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	4e-47
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	2e-46
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	2e-31
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	1e-29
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	5e-22
3cf4_G	170	Acetyl-COA decarboxylase/synthase epsilon subunit;	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1djl_A	207	Transhydrogenase DIII; rossmann fold dinucleotide	3e-04
2fsv_C	203	NAD(P) transhydrogenase subunit beta; NAD(P) trans	4e-04

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Length = 568

 Score =  388 bits (1000), Expect = e-130
 Identities = 190/471 (40%), Positives = 285/471 (60%), Gaps = 15/471 (3%)

Query: 7   QNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYA 66
            +      DG  +   +L +     M+GVVGIP+T+LA      G RF +F +EQ AGYA
Sbjct: 3   NDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYA 62

Query: 67  ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQE 124
           AS  GY+ GKPG+ LTVS PG ++G+  L++   N +P++++SGS +++  D  +GD++E
Sbjct: 63  ASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEE 122

Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
           +DQ+   +P  K + +   I ++P  +A+ +  AVSGRPGG Y+DLP  +  QTISV EA
Sbjct: 123 MDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEA 182

Query: 185 EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES 244
            KLL +                 I +A  L+K AK+P+I+ GKGAAYA+ + E++ LVE 
Sbjct: 183 NKLLFKPIDP---APAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEE 239

Query: 245 TGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDV 304
           TGIPFLP  M KGLLPD HP +A A R+ A+ QCDV +++GARLNWL+  G+   W  ++
Sbjct: 240 TGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDEL 299

Query: 305 -KFVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTK 362
            K+V +D+   E++  +     +VGD K  + ++ K +K  P     +  W  A+  K  
Sbjct: 300 KKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAP---KADAEWTGALKAKVD 356

Query: 363 DNVLKMEVQLAKDVV--PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT 420
            N  K+  ++  +      N+   + ++RD +L   +P   LV+EGAN +D  R ++   
Sbjct: 357 GNKAKLAGKMTAETPSGMMNYSNSLGVVRDFML--ANPDISLVNEGANALDNTRMIVDML 414

Query: 421 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
           +PR RLD+GTWG MG+G+GYC+AAA A   + V+AVEGDS FGFS +E+E 
Sbjct: 415 KPRKRLDSGTWGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELET 464

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Length = 564

 Score =  365 bits (940), Expect = e-121
 Identities = 193/466 (41%), Positives = 285/466 (61%), Gaps = 12/466 (2%)

Query: 8   NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAA 67
           + Q    DG  +  ++L       ++GVVGIPVT +A  A   G+R+I F +EQSAGYAA
Sbjct: 2   SDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAA 61

Query: 68  SAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQEL 125
           +A G+LT KPGI LTVS PG ++GL  L+N  +N +P++MISGS D+   D  +GD++EL
Sbjct: 62  AASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEEL 121

Query: 126 DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAE 185
           DQ+ A KP++K A +     ++   +A+ +  +VSGRPGG YLDLP +VL  T+   EA 
Sbjct: 122 DQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEAL 181

Query: 186 KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
             + + E+    +         +  A+SLL +A++PLI+ GKGAAY++A+ +L++ +ES 
Sbjct: 182 TTIVKVENPSPALL---PCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESA 238

Query: 246 GIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
            IPFLP  M KG+L DTHPL+A AARS A+   DV ++VGARLNWLL       W+ D +
Sbjct: 239 QIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLA-HGKKGWAADTQ 297

Query: 306 FVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
           F+ +D+  +EI+  R   + +VGD    ++ +  E+K   F       W + +    + N
Sbjct: 298 FIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTF--TTPLVWRDILNIHKQQN 355

Query: 365 VLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRC 424
             KM  +L+ D  P N+   +  +RD +    +    LV+EGANT+D  R ++   +PR 
Sbjct: 356 AQKMHEKLSTDTQPLNYFNALSAVRDVL--RENQDIYLVNEGANTLDNARNIIDMYKPRR 413

Query: 425 RLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
           RLD GTWG MG+G+GY I A++      VVA+EGDS FGFS +E+E
Sbjct: 414 RLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIE 458

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Length = 590

 Score =  216 bits (552), Expect = 6e-64
 Identities = 89/468 (19%), Positives = 163/468 (34%), Gaps = 41/468 (8%)

Query: 11  NAQIDGNTLAAKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYA 66
           + +I+      K L  +GA  ++G+       +  ++     +  V+F+   +E+    A
Sbjct: 1   DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEE--ENNVKFLQVKHEEVGAMA 58

Query: 67  ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELD 126
           A       G  G+ +   GPG  H + GL +  ++  P+V I GS  Q++     FQEL+
Sbjct: 59  AVMQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELN 118

Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
           Q       + +  +     ++PK V +    A++ R G   L++P D     I   +   
Sbjct: 119 QNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYS 177

Query: 187 LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246
                               DID AV LL  +K+P+I  G G         +++L     
Sbjct: 178 SANSLRKYAPIAPAAQ----DIDAAVELLNNSKRPVIYAGIGTMGHGPA--VQELARKIK 231

Query: 247 IPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGE--- 296
            P + T                          +  I + D  L  G+       F     
Sbjct: 232 APVITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSN------FPFSEV 285

Query: 297 PPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVE 355
              +     F+ +D+    +  R    + ++GDA   ++ I  ++            W  
Sbjct: 286 EGTFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVE-----ESAWWT 340

Query: 356 AIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGR 414
           A  K   +    + +   K+      +   ++   AI        I   + G +T    R
Sbjct: 341 ANLKNIANWREYINMLETKEEGD---LQFYQVYN-AINNHADEDAIYSIDVGNSTQTSIR 396

Query: 415 AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
             L  T       +  + TMG+ +   + A    P+R V  + GD  F
Sbjct: 397 -HLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAF 443

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Length = 603

 Score =  215 bits (549), Expect = 2e-63
 Identities = 105/473 (22%), Positives = 193/473 (40%), Gaps = 43/473 (9%)

Query: 7   QNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSA 63
           + ++   I       K L  +G  H++G+ G     +   A  A +  + +I   +E+  
Sbjct: 4   KQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMD-ALSAERDRIHYIQVRHEEVG 62

Query: 64  GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
             AA+A   LTGK G+    +GPG  H + GL +   +  P++ + G           FQ
Sbjct: 63  AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122

Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
           E+++       + + V A +   +P  + + + RA + + G   + +P D+  Q I   +
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAED 181

Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
                         + +       + +    L  A++PLI +G GA  A  E  L++L +
Sbjct: 182 WYA--SANSYQTPLLPEPD--VQAVTRLTQTLLAAERPLIYYGIGARKAGKE--LEQLSK 235

Query: 244 STGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHF-- 294
           +  IP + T   KG++ D +P         A    + A+ Q DV L VG        +  
Sbjct: 236 TLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNN------YPF 289

Query: 295 ---GEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKN 350
                   +     F+ +D+   ++  R K  + ++ DA+K L  I  ++ +       +
Sbjct: 290 AEVS--KAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERE-----S 342

Query: 351 HPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANT 409
            PW +A     K+    +     K   P   +   +++R A+  +  P  I   + G   
Sbjct: 343 TPWWQANLANVKNWRAYLASLEDKQEGP---LQAYQVLR-AVNKIAEPDAIYSIDVGDIN 398

Query: 410 MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
           ++  R  L  T     + +  + TMGVG+   IAA +  PER V  + GD G 
Sbjct: 399 LNANR-HLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGA 450

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Length = 549

 Score =  212 bits (543), Expect = 8e-63
 Identities = 92/466 (19%), Positives = 169/466 (36%), Gaps = 65/466 (13%)

Query: 22  KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
           K+L   G   ++GV G     ++   NR     + +++  +E+ A +AA A   L+G+  
Sbjct: 11  KTLESAGVKRIWGVTGDSLNGLSDSLNR--MGTIEWMSTRHEEVAAFAAGAEAQLSGELA 68

Query: 79  ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
           +     GPG +H + GL +   N  P++ I+      + G G FQE    E  +  S + 
Sbjct: 69  VCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYC 128

Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
                  ++P+ +A  + +AV  R G   + LP DV  +              +     V
Sbjct: 129 ELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYHAPQP----V 183

Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
                   ++ K   LL+ +    ++ G G A A    EL +       P +    GK  
Sbjct: 184 VTPE--EEELRKLAQLLRYSSNIALMCGSGCAGAHK--ELVEFAGKIKAPIVHALRGKEH 239

Query: 259 LPDTHPLAA-------TAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDV 311
           +   +P           ++    +   D  +++G +  +   +        D K + +D+
Sbjct: 240 VEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFY------PTDAKIIQIDI 293

Query: 312 CKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEV 370
               I       + LVGD K  L  +   ++++      +  +++   +  +D    ++ 
Sbjct: 294 NPASIGAHSKVDMALVGDIKSTLRALLPLVEEKA-----DRKFLDKALEDYRDARKGLDD 348

Query: 371 QLAKDVVPFNFMTPMRIIR--------DAILGVGSPAPILVSEGANTMDVGRAV------ 416
                    +   P  + +        DAI                T DVG         
Sbjct: 349 LAKPSEKAIH---PQYLAQQISHFAADDAIF---------------TCDVGTPTVWAARY 390

Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
           L     R  L +   G+M   +   + A    PER VVA+ GD GF
Sbjct: 391 LKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGF 436

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Length = 566

 Score =  207 bits (530), Expect = 7e-61
 Identities = 110/472 (23%), Positives = 186/472 (39%), Gaps = 41/472 (8%)

Query: 7   QNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYA 66
           Q        G  L    L   G   +FG+ G  +  + +  +   +R I   +E +A + 
Sbjct: 4   QYPVRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFM 63

Query: 67  ASAYGYLTGKPGILLTVSGPGC---VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
           A+A G +TGK G+ L  SGPGC   + G+A          P+V + G+  + D  +   Q
Sbjct: 64  AAAVGRITGKAGVALVTSGPGCSNLITGMA---TANSEGDPVVALGGAVKRADKAKQVHQ 120

Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
            +D V    P +K+A++      + + V+     A  GRPG  ++ LP DV+   +S   
Sbjct: 121 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKV 180

Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
                            G   +  ID+   L+ +AK P+ + G  A+       L++L+E
Sbjct: 181 LPA--------SGAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLE 232

Query: 244 STGIPFLPTPMGKGLLPDTH-PLAA-------TAARSLAIGQCDVALVVGARLNWLLHFG 295
           ++ IP   T    G +   +    A         A    +   D+ + +G          
Sbjct: 233 TSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYS------PV 286

Query: 296 E--PPKW-SKDVKFVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH 351
           E  P  W S +   V +DV     E    P + LVGD    L  + + I           
Sbjct: 287 EYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHR----LVLS 342

Query: 352 PWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTM 410
           P    I +  +    +  +      +    + P+RI+R  +  + +    L  + G+  +
Sbjct: 343 PQAAEILRDRQH--QRELLDRRGAQLNQFALHPLRIVRA-MQDIVNSDVTLTVDMGSFHI 399

Query: 411 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
            + R +      R  + +    TMGV L + I A +  PER VV+V GD GF
Sbjct: 400 WIARYLYT-FRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGF 450

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Length = 565

 Score =  207 bits (528), Expect = 1e-60
 Identities = 80/482 (16%), Positives = 157/482 (32%), Gaps = 73/482 (15%)

Query: 9   SQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAG 64
            + + +       ++L   GA  MFG+ G   +P             +      +E + G
Sbjct: 16  PRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEE---TQILPLHTLSHEPAVG 72

Query: 65  YAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGD 121
           +AA A    +   G+     G G    V+ +AG         P+V+ISG+    +   G 
Sbjct: 73  FAADAAARYSSTLGVAAVTYGAGAFNMVNAVAG---AYAEKSPVVVISGAPGTTEGNAGL 129

Query: 122 --FQELD----QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175
               +      Q +  K  +    +  D  + P  +A+VL  A   +    YL++P +++
Sbjct: 130 LLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVL-GAARAQSRPVYLEIPRNMV 188

Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
           +  +     +        A              D+ ++ ++ A  P+++          E
Sbjct: 189 NAEVEPVGDDPAWPVDRDALAAC---------ADEVLAAMRSATSPVLMVCVEVRRYGLE 239

Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHPLAA--------TAARSLAIGQCDVALVVGAR 287
            ++ +L +  G+P + T MG+GLL D               A  +  + + D   ++GA 
Sbjct: 240 AKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAI 299

Query: 288 L---NWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDE 343
           L   N    F    +     K +        +       + L G    +LE +    +  
Sbjct: 300 LSDTN----FAVSQRKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLPPSDRTT 355

Query: 344 PFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--DAILGVGSPAPI 401
                  +P       +     +                 PM I R  +  +  G    +
Sbjct: 356 RGKEPHAYPT----GLQADGEPIA----------------PMDIARAVNDRVRAGQEPLL 395

Query: 402 LVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 460
           + ++ G                   +  G +  MG G+   I A      + ++ V GD 
Sbjct: 396 IAADMGDCLF--TAM---DMIDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDG 450

Query: 461 GF 462
            F
Sbjct: 451 AF 452

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Length = 573

 Score =  204 bits (521), Expect = 1e-59
 Identities = 103/496 (20%), Positives = 179/496 (36%), Gaps = 68/496 (13%)

Query: 4   SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSA 63
           S +  + + +          L   G   +FGVVG    S+    V+ G+ F+   +E +A
Sbjct: 2   SRVSTAPSGKPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-GIDFVLTRHEFTA 60

Query: 64  GYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDF-GR 119
           G AA     +TG+P       GPG      G+A     +++  P++ ++   +  D    
Sbjct: 61  GVAADVLARITGRPQACWATLGPGMTNLSTGIA---TSVLDRSPVIALAAQSESHDIFPN 117

Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
              Q LD V  V P SK+AV+ +   E+   V   +  A++   G  ++ LP D+L  + 
Sbjct: 118 DTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSE 177

Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
            +            AK             D+A +LL EAK P++V G  A  + A   ++
Sbjct: 178 GIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIR 237

Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPLAA------------TAARSLAIGQCDVALVVGAR 287
            L E   IP + T + KG+LP  H L                A        D+ L VG  
Sbjct: 238 ALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYD 297

Query: 288 LNWLLHF-----GEPPKWSKDVKFVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIK 341
                 +         +   + K V +      I  + +P + +V D    +E       
Sbjct: 298 ------YAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351

Query: 342 DEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--DAILGVGSPA 399
                  K    +E +  +  + +   E          + M   ++I   + ++   +  
Sbjct: 352 SFG---AKQRHDIEPLRARIAEFLADPE-------TYEDGMRVHQVIDSMNTVMEEAAEP 401

Query: 400 P--ILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAI 446
               +VS      D+G                  +P   L +    + G G+   I A +
Sbjct: 402 GEGTIVS------DIG-----FFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQM 450

Query: 447 ACPERLVVAVEGDSGF 462
           A P++    + GD GF
Sbjct: 451 ARPDQPTFLIAGDGGF 466

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Length = 616

 Score =  200 bits (512), Expect = 5e-58
 Identities = 123/493 (24%), Positives = 192/493 (38%), Gaps = 77/493 (15%)

Query: 7   QNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQS 62
             +  A++     A   L   G T  FGV G    P  +++       G+R I   + + 
Sbjct: 20  HMASMAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRK---HGGIRHILARHVEG 76

Query: 63  AGYAASAYGYLT-GKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDFG 118
           A + A  Y   T G  G+ L  SGP     +  L    +   ++ PI+ I+G   +    
Sbjct: 77  ASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALY---SASADSIPILCITGQAPRARLH 133

Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
           + DFQ +D     KP SK AV  ++   VP+ + Q      SGRPG   +DLP DV    
Sbjct: 134 KEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAE 193

Query: 179 ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
           I               K   ++       I+KAV +L +A++P+IV G G   A A   L
Sbjct: 194 IEFDPDMYE--PLPVYKPAASRM-----QIEKAVEMLIQAERPVIVAGGGVINADAAALL 246

Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPLAA-------TAARS-LAIGQCDVALVVGARLNW 290
           ++  E T +P +PT MG G +PD H L A               +   D+   +G R   
Sbjct: 247 QQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNR--- 303

Query: 291 LLHF-----GEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEP 344
              F     G   K+++  K V +D+   +I  +  P LG+V DAK  L ++ +  ++  
Sbjct: 304 ---FANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQ 360

Query: 345 FCLGKNH--PWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400
                     WV      K+T   + K       D VP   + P R+    +        
Sbjct: 361 KAGRLPCRKEWVADCQQRKRT--LLRKTH----FDNVP---VKPQRVYE-EMNKAFGRDV 410

Query: 401 ILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAIACP 449
             V+       +G                  + R  ++ G  G +G  +   +    A P
Sbjct: 411 CYVT------TIG-----LSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADP 459

Query: 450 ERLVVAVEGDSGF 462
           +R VVA+ GD  F
Sbjct: 460 KRNVVAISGDFDF 472

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Length = 589

 Score =  193 bits (494), Expect = 2e-55
 Identities = 90/434 (20%), Positives = 154/434 (35%), Gaps = 62/434 (14%)

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
           E    +  + Y Y+  +   +      G +   A +        P V I  + D +  GR
Sbjct: 52  ELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGR 111

Query: 120 GD-FQELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176
            +  Q++       P ++    V+   + +V + + +    A     G  Y+D+P D+  
Sbjct: 112 SEAAQQVPWQS-FTPIARSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTA 168

Query: 177 QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236
             I           A  AK  +      N D+ +A + L  AK P+I+ G G A +    
Sbjct: 169 DQIDDKALVPR--GATRAKSVLH---APNEDVREAAAQLVAAKNPVILAGGGVARSGGSE 223

Query: 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAA-------TAARSLAIGQCDVALVVGARLN 289
            L KL E  G+P + T  G G+ P+TH LA          + +  +   D  LV+G+R  
Sbjct: 224 ALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSR-- 281

Query: 290 WLLHFGE----PPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEP 344
                 +        +K  KFV VD     +     P L +V DAK  +E + + +    
Sbjct: 282 ----LSDWGIAQGYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTS 337

Query: 345 FCLGKNH---PWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA 399
                 +           ++   D    +  Q + D +P    +  R +   +  V  P 
Sbjct: 338 GFKAVRYQERENFRQATEFRAAWD--GWVREQESGDGMP---ASMFRAMA-EVRKVQRPE 391

Query: 400 PILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAIAC 448
            I+V+      D+G                   PR  + +   G +G G    + A +A 
Sbjct: 392 DIIVT------DIG-----NHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAE 440

Query: 449 PERLVVAVEGDSGF 462
           P   V    GD   
Sbjct: 441 PNSRVFLGTGDGAL 454

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Length = 563

 Score =  185 bits (473), Expect = 1e-52
 Identities = 94/437 (21%), Positives = 160/437 (36%), Gaps = 69/437 (15%)

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKD 116
           E +AG+AA  Y     K G+ L  +G G    V  +A   N  ++  P++ ++GS   +D
Sbjct: 50  EAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIA---NAWLDRTPVLFLTGSGALRD 106

Query: 117 FGRGDFQE-LDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173
                 Q  +DQV    P +K    V       +P+ V Q +  A+S   G   LDLP D
Sbjct: 107 DETNTLQAGIDQVAMAAPITKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164

Query: 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
           +L   I          +   +     +     +D+D+A++LL++A++P+IV G  A+   
Sbjct: 165 ILMNQIDEDSVIIP--DLVLSAHG-ARPD--PADLDQALALLRKAERPVIVLGSEASRTA 219

Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA------TAARSLAIGQCDVALVVGAR 287
            +  L   V +TG+P      G  +L                + + A    D+ L++GAR
Sbjct: 220 RKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGAR 279

Query: 288 LNWLLHF-----GEPPKWS-KDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEI 340
                 F         +      + + VD    E+  L+   LG+V D    +E + +  
Sbjct: 280 ------FGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT 333

Query: 341 KDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398
             +         W   +    + +         +A      + + P    +  I      
Sbjct: 334 AQDA-AWPDRGDWCAKVTDLAQER------YASIAAKSSSEHALHPFHASQ-VIAKHVDA 385

Query: 399 APILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAIA 447
              +V+      D                    +P   L  G  G+MGVG G  + A +A
Sbjct: 386 GVTVVA------DGA-----LTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVA 434

Query: 448 CPE--RLVVAVEGDSGF 462
             E  R  + V GD   
Sbjct: 435 DLEAGRRTILVTGDGSV 451

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Length = 677

 Score =  181 bits (461), Expect = 2e-50
 Identities = 113/448 (25%), Positives = 175/448 (39%), Gaps = 62/448 (13%)

Query: 52  VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMI 108
             F+   +EQ AG+ A  Y   +GKPG++L  SGPG    V  +A   +   +  P+V+ 
Sbjct: 121 FNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMA---DAFADGIPMVVF 177

Query: 109 SGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168
           +G       G   FQE D V   +  +K+ V  K + E+P  + +  E A SGRPG   +
Sbjct: 178 TGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLV 237

Query: 169 DLPTDVLHQTISVS--EAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 226
           DLP DV    +         L   A +   +  Q   V   I+KA  L+  AKKP++  G
Sbjct: 238 DLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVG 297

Query: 227 KGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQC 278
            G   +A     LK+L +   IP   T  G G      P +         A  +LA+   
Sbjct: 298 AGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNA 357

Query: 279 DVALVVGARL-----NWLLHFGEPPKWSKDVKFVLV---DVCKEEIE-LRKPHLGLVGDA 329
           D+ + VGAR        +  F    + +       +   +V  + I  + +  + + GDA
Sbjct: 358 DLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDA 417

Query: 330 KKVLEMINKEIKDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRI 387
              L  +  +I        +   W   I  WKK          +          + P  +
Sbjct: 418 TTNLGKMMSKIFPVK----ERSEWFAQINKWKKE--YPYAYMEETPGSK-----IKPQTV 466

Query: 388 IR--DAILGVGSPAPILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTM 434
           I+    +        I+ +       VG     Q             P   + +G  GTM
Sbjct: 467 IKKLSKVANDTGRHVIVTT------GVG-----QHQMWAAQHWTWRNPHTFITSGGLGTM 515

Query: 435 GVGLGYCIAAAIACPERLVVAVEGDSGF 462
           G GL   I A +A PE LV+ ++GD+ F
Sbjct: 516 GYGLPAAIGAQVAKPESLVIDIDGDASF 543

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528

 Score =  178 bits (453), Expect = 4e-50
 Identities = 83/419 (19%), Positives = 137/419 (32%), Gaps = 50/419 (11%)

Query: 60  EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
           E      A  Y   + KP  +   S  G  + +  LSN   +  P+++ +G   +   G 
Sbjct: 47  EACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGV 106

Query: 120 GDF-QELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176
                 +D     +P  K  +        EVP  +++ +  A     G  YL +P D   
Sbjct: 107 EALLTNVDAANLPRPLVKWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWD 164

Query: 177 QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236
           +           +   S+        + + D+D  V  L  A  P IV G     A A  
Sbjct: 165 KDADPQSHHLFDRHVSSSVR------LNDQDLDILVKALNSASNPAIVLGPDVDAANANA 218

Query: 237 ELKKLVESTGIPFLPTP-MGKGLLPDTHPL------AATAARSLAIGQCDVALVVGARLN 289
           +   L E    P    P   +   P  HP       A  AA S  +   DV LV+GA + 
Sbjct: 219 DCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVF 278

Query: 290 WLLHF--GEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFC 346
               +   +P ++     + + V     E         +V D   +   +   +++    
Sbjct: 279 ---RYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQ 335

Query: 347 LGKNHPWVEAIWKKTKDNVLKME--VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404
           L       E          L  E       D+ P           +AI          ++
Sbjct: 336 L--PTAAPEPAKVDQDAGRLHPETVFDTLNDMAP----------ENAIY---------LN 374

Query: 405 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
           E  + T  + + + ++  P         G +G  L   I   +A PER V+AV GD   
Sbjct: 375 ESTSTTAQMWQRLNMR-NPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSA 431

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Length = 552

 Score =  177 bits (451), Expect = 1e-49
 Identities = 90/479 (18%), Positives = 155/479 (32%), Gaps = 89/479 (18%)

Query: 21  AKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
              L+  GA H+FGV G   +     + +      + ++   NE +A YAA  Y    G 
Sbjct: 12  LDRLTDCGADHLFGVPGDYNLQFLDHVIDSP---DICWVGCANELNASYAADGYARCKGF 68

Query: 77  PGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQKD-------FG 118
              LLT  G G    ++G+AG     +        P++ I G   +  Q+         G
Sbjct: 69  -AALLTTFGVGELSAMNGIAGSYAEHV--------PVLHIVGAPGTAAQQRGELLHHTLG 119

Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
            G+F+        +P +       +     +    +       RPG  YL LP DV  + 
Sbjct: 120 DGEFRH--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG--YLMLPADVAKKA 175

Query: 179 ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
            +        K+A +    +          D A + L  +K+  ++          +  L
Sbjct: 176 ATPPVNALTHKQAHADSACLKA------FRDAAENKLAMSKRTALLADFLVLRHGLKHAL 229

Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVGARLN- 289
           +K V+   +      MGKG+  +            A+T A   AI   D  L VG R   
Sbjct: 230 QKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTD 289

Query: 290 ----WLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEP 344
                  H           + + V      + ++    + +    + ++E+  + +    
Sbjct: 290 TLTAGFTHQ------LTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHAGL 343

Query: 345 FCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404
                      AI     D  L                T     R  +     P  I+++
Sbjct: 344 M-----SSSSGAIPFPQPDGSL----------------TQENFWR-TLQTFIRPGDIILA 381

Query: 405 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
           + G +    G   L        +    WG++G  L     A  ACP R V+ + GD   
Sbjct: 382 DQGTSAF--GAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAA 438

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Length = 566

 Score =  173 bits (441), Expect = 3e-48
 Identities = 82/474 (17%), Positives = 150/474 (31%), Gaps = 76/474 (16%)

Query: 21  AKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
           A+ L   G  H F V G   + +   L        ++ I   NE + G++A  Y    G 
Sbjct: 10  AERLVQIGLKHHFAVAGDYNLVLLDQLLLNK---DMKQIYCCNELNCGFSAEGYARSNGA 66

Query: 77  PGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQK-------DFG 118
               +     G    ++ L G     L        P+++ISG   S DQ          G
Sbjct: 67  -AAAVVTFSVGAISAMNALGGAYAENL--------PVILISGAPNSNDQGTGHILHHTIG 117

Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
           + D+    Q+E  +  +  A    D    P  +  V+  A+  R    YLD+  ++  + 
Sbjct: 118 KTDYS--YQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPA-YLDIACNIASEP 174

Query: 179 ISVSEAEKL-LKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE 237
                     L E E    ++         +D  V+LL+++  P+++ G     A A   
Sbjct: 175 CVRPGPVSSLLSEPEIDHTSLKA------AVDATVALLEKSASPVMLLGSKLRAANALAA 228

Query: 238 LKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVGARLN 289
            + L +            KG  P+ H           +       +   D  L +    N
Sbjct: 229 TETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFN 288

Query: 290 WLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGK 349
                     W K    +L +   + + +           +  L+ + ++    P    K
Sbjct: 289 -DYSTVGWSAWPKGPNVILAEP--DRVTVDGRAYDGF-TLRAFLQALAEKAPARPASAQK 344

Query: 350 NHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GAN 408
           +     ++   + +  L                T   I+R  I  + +    LV+E G +
Sbjct: 345 SSVPTCSLTATSDEAGL----------------TNDEIVR-HINALLTSNTTLVAETGDS 387

Query: 409 TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
                   +             WG +G  +      A+   +R  V + GD  F
Sbjct: 388 WF--NAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSF 439

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Length = 568

 Score =  172 bits (438), Expect = 8e-48
 Identities = 77/486 (15%), Positives = 150/486 (30%), Gaps = 96/486 (19%)

Query: 21  AKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
           A+ L   G  H F V G         + +           +  +   NE + G++A  Y 
Sbjct: 10  AERLVQIGLKHHFAVAGDYNLVLLDNLLLNK--------NMEQVYCCNELNCGFSAEGYA 61

Query: 72  YLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQKD---- 116
              G     +     G       + G     L        P+++ISG   + D       
Sbjct: 62  RAKGA-AAAVVTYSVGALSAFDAIGGAYAENL--------PVILISGAPNNNDHAAGHVL 112

Query: 117 ---FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173
               G+ D+    Q+E  K  +  A       E P  +  V++ A+  +    YL++  +
Sbjct: 113 HHALGKTDYH--YQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPV-YLEIACN 169

Query: 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
           +     +       L   E++ E       +N+ +++ +  +    K  ++ G     A 
Sbjct: 170 IASMPCAAPGPASALFNDEASDEAS-----LNAAVEETLKFIANRDKVAVLVGSKLRAAG 224

Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVG 285
           AE    K  ++ G         K   P+ +P          +       + + D  + + 
Sbjct: 225 AEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALA 284

Query: 286 ARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEP 344
              N               K VL +     +  +R P + L     ++ + ++K+     
Sbjct: 285 PVFN-DYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALD 343

Query: 345 FCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404
           F    N   ++          L                    I R  +  + +P   +++
Sbjct: 344 FFKSLNAGELKKAAPADPSAPL----------------VNAEIAR-QVEALLTPNTTVIA 386

Query: 405 E------GANTMDV--GRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456
           E       A  M +  G  V  +           WG +G  +      A+  PER  + +
Sbjct: 387 ETGDSWFNAQRMKLPNGARVEYE---------MQWGHIGWSVPAAFGYAVGAPERRNILM 437

Query: 457 EGDSGF 462
            GD  F
Sbjct: 438 VGDGSF 443

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Length = 563

 Score =  170 bits (433), Expect = 4e-47
 Identities = 91/501 (18%), Positives = 156/501 (31%), Gaps = 105/501 (20%)

Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQS 62
           ++I       + L       +FG+ G         I            G+R+    NE +
Sbjct: 2   SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVE--------GMRWAGNANELN 53

Query: 63  AGYAASAYGYLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---S 111
           A YAA  Y  + G    ++T  G G    ++G+AG     +         ++ + G    
Sbjct: 54  AAYAADGYARIKGM-SCIITTFGVGELSALNGIAGSYAEHV--------GVLHVVGVPSI 104

Query: 112 CDQKD-------FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR-P 163
             Q          G GDF            S+      DI   P  + + +      + P
Sbjct: 105 SAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRP 162

Query: 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLI 223
              YL LP +++   +       LL+                  ID  + L K+AK P+I
Sbjct: 163 V--YLGLPANLVDLNVPAK----LLQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVI 216

Query: 224 VFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAI 275
           +     +    + E KKL++ T  P   TPMGKG + + HP          +      A+
Sbjct: 217 LADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAV 276

Query: 276 GQCDVALVVGARL------NWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK---PHLGLV 326
              D+ L VGA L      ++   +       K    V      + +++R    P + + 
Sbjct: 277 ESADLILSVGALLSDFNTGSFSYSY-------KTKNIVEFHS--DHMKIRNATFPGVQMK 327

Query: 327 GDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMR 386
              +K+L  I    K              A         L                    
Sbjct: 328 FVLQKLLTTIADAAKGYK--PVAVPARTPANAAVPASTPL----------------KQEW 369

Query: 387 IIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGL----GYC 441
           +    +        ++++E G +    G            +    WG++G       G  
Sbjct: 370 MWN-QLGNFLQEGDVVIAETGTSAF--GINQTTFPNNTYGISQVLWGSIGFTTGATLGAA 426

Query: 442 IAAAIACPERLVVAVEGDSGF 462
            AA    P++ V+   GD   
Sbjct: 427 FAAEEIDPKKRVILFIGDGSL 447

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Length = 570

 Score =  168 bits (429), Expect = 2e-46
 Identities = 80/484 (16%), Positives = 158/484 (32%), Gaps = 102/484 (21%)

Query: 21  AKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
              L   G   +FGV G         I             +++I   NE +A Y A  Y 
Sbjct: 32  LDRLHELGIEEIFGVPGDYNLQFLDQIISRE--------DMKWIGNANELNASYMADGYA 83

Query: 72  YLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
             T K    LT  G G    ++GLAG     L        P+V I GS   K    G F 
Sbjct: 84  R-TKKAAAFLTTFGVGELSAINGLAGSYAENL--------PVVEIVGSPTSKVQNDGKFV 134

Query: 124 ELD--------QVEAVKPFSKFAVKAKDIT---EVPKCVAQVLERAVSGRPGGCYLDLPT 172
                       ++  +P +             E+ + ++Q+L+     +P   Y++LP 
Sbjct: 135 HHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKE---RKPV--YINLPV 189

Query: 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA 232
           DV              + + +              + K    LK A+KP+++ G      
Sbjct: 190 DVAAAKAEKPALSLEKESSTTNTTEQVI-------LSKIEESLKNAQKPVVIAGHEVISF 242

Query: 233 RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVV 284
             E  + + V  T +P      GK  + ++ P          +  +    +   D  L++
Sbjct: 243 GLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILML 302

Query: 285 GARLNWLLHF-----GEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKE 339
           G +            G       + K + +++  +E  +    +    D + V+  +++ 
Sbjct: 303 GVK------LTDSSTGAFTHHLDENKMISLNI--DEGIIFNKVVEDF-DFRAVVSSLSEL 353

Query: 340 IKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA 399
              E         +++  +++   +                 ++  R+ + A+  +    
Sbjct: 354 KGIEY-----EGQYIDKQYEEFIPSSAP--------------LSQDRLWQ-AVESLTQSN 393

Query: 400 PILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEG 458
             +V+E G +    G + +        +    WG++G      + + IA  E   +   G
Sbjct: 394 ETIVAEQGTSFF--GASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIG 451

Query: 459 DSGF 462
           D   
Sbjct: 452 DGSL 455

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578

 Score =  126 bits (318), Expect = 2e-31
 Identities = 75/484 (15%), Positives = 158/484 (32%), Gaps = 49/484 (10%)

Query: 6   LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQS 62
           L N +    D      + L   G        G    P+  +      L  +     +E+S
Sbjct: 3   LTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPIL--KIYVDVDERS 60

Query: 63  AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF 122
           AG+ A      + +P +LL  SG    +    ++   ++  P+++++     +    G  
Sbjct: 61  AGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAP 120

Query: 123 QELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAV----SGRPGGCYLDLPTDV- 174
           Q +DQ+       K        ++  E+ +       RAV        G  +L+ P    
Sbjct: 121 QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREP 180

Query: 175 LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234
           L   +  S      K+        T   + +S I K V+     KK + V G        
Sbjct: 181 LVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECT-GKKGVFVVG-PIDKKEL 238

Query: 235 EGELKKLVESTGIPFLPTPM-GKGLLPDTHPLAATAARSL-------AIGQCDVALVVGA 286
           E  +  L +  G P L  P+ G         +      +             +V +  G+
Sbjct: 239 EQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGS 298

Query: 287 R------LNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI 340
                   NWL    +   +  D      D       ++     +  D + +L+++ + +
Sbjct: 299 MPVSKPLKNWLEQLSDIRFYVVDPGAAWKDP------IKAVTDMIHCDERFLLDIMQQNM 352

Query: 341 KDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400
            D+     K+  W+   W        +    +  ++     +   +I+ +    +   A 
Sbjct: 353 PDDA----KDAAWLNG-WTSYNKVARE---IVLAEMANTTILEEGKIVAELRRLLPDKAG 404

Query: 401 ILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAI--ACPERLVVAVEG 458
           + +       DV      Q + + ++ A   G    G+   +++A+  +   + +  + G
Sbjct: 405 LFIGNSMPIRDVDT-YFSQIDKKIKMLANR-GAN--GIDGVVSSALGASVVFQPMFLLIG 460

Query: 459 DSGF 462
           D  F
Sbjct: 461 DLSF 464

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Length = 604

 Score =  121 bits (305), Expect = 1e-29
 Identities = 71/482 (14%), Positives = 143/482 (29%), Gaps = 45/482 (9%)

Query: 6   LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQS 62
           L+ + N             +L G T      G    P+  L      +        +E+S
Sbjct: 23  LEMTVNPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDI--SVHVQIDERS 80

Query: 63  AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF 122
           AG+ A        +P +L+  SG    +    +     +  PI++++     +    G  
Sbjct: 81  AGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAP 140

Query: 123 QELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAV----SGRPGGCYLDLPTDVL 175
           Q ++Q      F KF       ++  ++ + +  +  RA         G  ++++P    
Sbjct: 141 QAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREP 200

Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
                  E    ++             +    +     +L EA+K +IV G+  + A  E
Sbjct: 201 LMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKE 260

Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFG 295
             +  L ++   P L  P+               A    +   ++   +    + ++ FG
Sbjct: 261 -NIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRP--DVVIRFG 317

Query: 296 EPPKWSKDVKFVLVDVCKEEIE-----------LRKPHLGLVGDAKKVLEMINKEIKDEP 344
             P  SK V   L D    +              +     +  +A    E I   +    
Sbjct: 318 PMP-VSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAAT 376

Query: 345 FCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404
                        W+           +  + +   +      + R     V   + + V 
Sbjct: 377 -----RSSEWLEKWQFVNGRFR----EHLQTISSEDVSFEGNLYRILQHLVPENSSLFVG 427

Query: 405 EGANTMDVGRAVLVQTEPRCRLDAGTWGTMGV-GLGYCIAAAIAC---PERLVVAVEGDS 460
                 DV      Q  P        +   G  G+   +++A+      +  V  V GD 
Sbjct: 428 NSMPIRDVDTFFEKQDRPF-----RIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDL 482

Query: 461 GF 462
            F
Sbjct: 483 SF 484

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Length = 556

 Score = 98.3 bits (245), Expect = 5e-22
 Identities = 56/479 (11%), Positives = 142/479 (29%), Gaps = 51/479 (10%)

Query: 1   MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIP---VTSLANRAVQLG-VRFIA 56
           M+ S   N + A +       ++L+  G  H   +   P    T L   A +        
Sbjct: 1   MSVSAF-NRRWAAV-----ILEALTRHGVRH---ICIAPGSRSTLLTLAAAENSAFIHHT 51

Query: 57  FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD 116
             +E+  G+ A     ++ +P  ++  SG    +    L    +    +++++     + 
Sbjct: 52  HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPEL 111

Query: 117 FGRGDFQELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAVSGRPGGCYLDLP-T 172
              G  Q + Q          ++   +          V+ +     +   GG +++ P  
Sbjct: 112 IDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171

Query: 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA 232
           + L+  +  +      +  +  ++             +        ++   V   G   A
Sbjct: 172 EPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSA 231

Query: 233 RAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARL-- 288
               ++    ++ G P +   +      LP        A  +  + Q  + + +G+ L  
Sbjct: 232 EEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTG 291

Query: 289 NWLLHFGEPPKWSKDVKFVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCL 347
             LL +       +  ++ +VD  +  ++        L+ +    LE+   E        
Sbjct: 292 KRLLQW---QASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAE-------- 340

Query: 348 GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA 407
            K  PW   I +  +  +  +  +              ++       +     + V    
Sbjct: 341 -KRQPWCVEIPRLAEQAMQAVIARRDA-------FGEAQLAHRICDYLPEQGQLFVGNSL 392

Query: 408 NTMDVGRAVLVQTEPRCRLDAGTWGTMGV-GLGYCIAAAI---ACPERLVVAVEGDSGF 462
               +     +            +   G  G+   ++ A        +  +A+ GD   
Sbjct: 393 VVRLIDALSQLPAGYPV------YSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSA 445

>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} Length = 170

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268
           + A  ++ +AK+PL++ G  A        + K+ ++  IP   T     +L D    A  
Sbjct: 25  EMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKY 84

Query: 269 AARSLAI--------------GQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310
               +                G  D+ + +G +  ++       K   ++K + ++
Sbjct: 85  INAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIE 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 48/357 (13%), Positives = 100/357 (28%), Gaps = 93/357 (26%)

Query: 167 YLDLPTDVLHQT----ISVSEAEKLLKEAESAK-ETVTQGGIVNSDIDKAVSLLKEAKKP 221
           ++D  T          +SV E +  +   +    + + +  +   +ID  +         
Sbjct: 6   HMDFETGEHQYQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 222 LIVFG----KGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIG 276
           L +F     K      +   E    V      FL +P+       T     +    + I 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEE----VLRINYKFLMSPI------KTEQRQPSMMTRMYIE 114

Query: 277 QCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE--IELR------KPHLGLV-- 326
           Q D       RL     + +   ++K       +V + +  ++LR      +P   ++  
Sbjct: 115 QRD-------RL-----YNDNQVFAKY------NVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 327 ---GDAKKVLEMINKEIKDEPFCLGKNHP--WVEAIWKKTKDNVLKMEVQLAKDVVPFNF 381
              G  K  +                +    W+      + + VL+M  +L   + P N+
Sbjct: 157 GVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NW 213

Query: 382 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTE-PRCRL------DAGTWGTM 434
                          S    L           R +L       C L      +A  W   
Sbjct: 214 ---------TSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 435 GVGLGYC----------IAAAIACPERLVVAVEGDSGFGFSAVEVEV----WLSCII 477
            +    C          +   ++      ++++       +  EV+     +L C  
Sbjct: 263 NLS---CKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRP 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 99/326 (30%)

Query: 125 LDQVEAVKPFSKFAVKAKD-ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
           L  V+  K ++ F +  K  +T   K V   L  A +       LD  +  L       E
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLTP----DE 302

Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKK--PLIVFGKGAAY----ARAEG- 236
            + LL      K        ++        L +E     P  +     +     A  +  
Sbjct: 303 VKSLL-----LK-------YLDCRPQD---LPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 237 ------ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL--VVGARL 288
                 +L  ++ES+ +  L     + +              L++      +  ++ + +
Sbjct: 348 KHVNCDKLTTIIESS-LNVLEPAEYRKMF-----------DRLSVFPPSAHIPTILLSLI 395

Query: 289 NWL-LHFGEPP-------------KWSKDVKFVLVDV-------CKEEIELRKPHLGLVG 327
            W  +   +               K  K+    +  +        + E  L   H     
Sbjct: 396 -WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---H----- 446

Query: 328 DAKKVLEMINKEIKDEPFCLGKNHPWVEAIW-------KKTKDNVLKMEV--QLAKDVVP 378
             + +++  N     +   L    P+++  +        K  ++  +M +   +  D   
Sbjct: 447 --RSIVDHYNIPKTFDSDDLIP--PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--- 499

Query: 379 FNFMTPMRIIRD--AILGVGSPAPIL 402
           F F+   +I  D  A    GS    L
Sbjct: 500 FRFLE-QKIRHDSTAWNASGSILNTL 524

>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A* Length = 207

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 28/119 (23%)

Query: 190 EAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
                K     G     ++D A+ +++EA   +I  G G   A+A+  +  LV+      
Sbjct: 17  STAGGKPMEISGTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVK------ 70

Query: 250 LPTPMGKGLLPDTHPLAATAARSLAI----------------------GQCDVALVVGA 286
           + T  GK +    HP+A      L +                         D+ LV+GA
Sbjct: 71  MLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGA 129

>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C* Length = 203

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 28/118 (23%)

Query: 191 AESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250
             +A        +     + A  ++K A K +IV G G A A+A+  L+++ +      +
Sbjct: 19  VAAAGGAAGDRSVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMAD------V 72

Query: 251 PTPMGKGLLPDTHPLAATAARSLAI----------------------GQCDVALVVGA 286
               G  +    HP+A      + +                         DVA V+GA
Sbjct: 73  LKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGA 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	482
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	100.0
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	100.0
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	100.0
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	100.0
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	100.0
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	100.0
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	100.0
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	100.0
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	100.0
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	100.0
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	100.0
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	100.0
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	100.0
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	100.0
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	100.0
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	100.0
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	100.0
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	100.0
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	100.0
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	100.0
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	100.0
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	100.0
3cf4_G	170	Acetyl-COA decarboxylase/synthase epsilon subunit;	99.73
1ytl_A	174	Acetyl-COA decarboxylase/synthase complex epsilon	99.66
1yd7_A	395	2-keto acid:ferredoxin oxidoreductase subunit alph	99.63
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	98.94
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	98.6
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	98.44
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	98.34
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	98.32
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	98.27
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	98.27
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	98.27
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	98.24
3l84_A	632	Transketolase; TKT, structural genomics, center fo	98.17
3uk1_A	711	Transketolase; structural genomics, seattle struct	98.17
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	98.16
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	98.1
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	98.09
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	98.07
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	98.07
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	98.07
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	98.02
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	97.83
1o97_D	320	Electron transferring flavoprotein alpha-subunit;	97.11
1efv_A	315	Electron transfer flavoprotein; electron transport	97.0
3glr_A	285	NAD-dependent deacetylase sirtuin-3, mitochondria;	97.0
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	96.77
1efp_A	307	ETF, protein (electron transfer flavoprotein); ele	96.64
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	96.49
1j8f_A	323	SIRT2, sirtuin 2, isoform 1, silencing INFO; gene	96.46
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	96.36
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	96.13
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	96.12
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	95.99
2bru_C	186	NAD(P) transhydrogenase subunit beta; paramagnetic	95.66
1pno_A	180	NAD(P) transhydrogenase subunit beta; nucleotide b	95.63
1d4o_A	184	NADP(H) transhydrogenase; nucleotide-binding fold,	95.63
1djl_A	207	Transhydrogenase DIII; rossmann fold dinucleotide	95.62
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	95.58
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	95.52
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	95.5
2hjh_A	354	NAD-dependent histone deacetylase SIR2; protein, s	95.49
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	95.49
1q1a_A	289	HST2 protein; ternary complex, histone deacetylase	95.46
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	95.46
2fsv_C	203	NAD(P) transhydrogenase subunit beta; NAD(P) trans	95.4
4iao_A	492	NAD-dependent histone deacetylase SIR2; protein co	95.38
1q14_A	361	HST2 protein; histone deacetylase, hydrolase; 2.50	95.32
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	95.14
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	95.1
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	94.88
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	94.85
1s5p_A	235	NAD-dependent deacetylase; protein deacetylase, SI	94.84
3l84_A	632	Transketolase; TKT, structural genomics, center fo	94.76
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	94.66
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	94.64
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	94.56
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	94.53
3pki_A	355	NAD-dependent deacetylase sirtuin-6; ADP ribose, s	94.44
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	94.28
1yc5_A	246	NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM,	94.03
1ma3_A	253	SIR2-AF2, transcriptional regulatory protein, SIR2	93.9
3k35_A	318	NAD-dependent deacetylase sirtuin-6; rossmann fold	93.89
1m2k_A	249	Silent information regulator 2; protein-ligand com	93.67
3riy_A	273	NAD-dependent deacetylase sirtuin-5; desuccinylase	93.33
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	93.04
3uk1_A	711	Transketolase; structural genomics, seattle struct	92.95
3u31_A	290	SIR2A, transcriptional regulatory protein SIR2 hom	92.39
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	92.35
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	92.27
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	91.39
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	91.21
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	90.89
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	90.17
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	89.73
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	88.0
3c2q_A	345	Uncharacterized conserved protein; putative LOR/SD	87.79
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	87.45
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	87.38
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	86.89
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	86.78
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	86.25
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	86.11
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	85.34
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	84.91
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	83.66
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	83.05
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	80.64

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=100.00  E-value=9.3e-87  Score=710.15  Aligned_cols=463  Identities=41%  Similarity=0.722  Sum_probs=397.7

Q ss_pred             ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      +..++++++|++.|+++||+||||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus         5 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N   84 (564)
T 2q28_A            5 LQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLN   84 (564)
T ss_dssp             CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred             cccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHH
Confidence            45579999999999999999999999999999999998778999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      +++||++|+.+++|||+|+|++++...+  ++.+|++||..+|+++|||++++++++++++.+++|++.|.++|||||||
T Consensus        85 ~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l  164 (564)
T 2q28_A           85 GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYL  164 (564)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence            9999999999999999999999998877  68999999999999999999999999999999999999999999999999


Q ss_pred             EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590          169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP  248 (482)
Q Consensus       169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p  248 (482)
                      +||.|++.++++.... ..+. .+ ...+...+.++++.+++++++|.+||||+|++|.++.++++.+++.+|||++|+|
T Consensus       165 ~iP~dv~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~P  241 (564)
T 2q28_A          165 DLPANVLAATMEKDEA-LTTI-VK-VENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIP  241 (564)
T ss_dssp             EEEHHHHHCEEEHHHH-HHTC-CC-CSCSSCCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCC
T ss_pred             EcCHHHhhcccccccc-cccc-cc-ccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCC
Confidence            9999998776543210 0100 00 0000112235678899999999999999999999998889999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEec
Q 011590          249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVG  327 (482)
Q Consensus       249 v~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~  327 (482)
                      |++|+++||.+|++||+++|...++++++||+||.||+++++..++++ ..|.+++++||||.|+.+++... .++.+++
T Consensus       242 v~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~  320 (564)
T 2q28_A          242 FLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIEPQEIDSNRPIAVPVVG  320 (564)
T ss_dssp             EEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGT-TTSCTTCEEEEEESCGGGTTSSSCCSEEEES
T ss_pred             EEeccCccccCCCCChhhcChHHHhHhhcCCEEEEECCcccccccccc-cccCCCCeEEEEeCCHHHhcCCCCCCeEEEc
Confidence            999999999999999999999888899999999999999987655555 55667889999999999997665 4999999


Q ss_pred             cHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeCch
Q 011590          328 DAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA  407 (482)
Q Consensus       328 D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~  407 (482)
                      |++.+|++|.+.++....  .....|.+.+.+.++++..........+..++++.++++.|++.++  .|++.++++||+
T Consensus       321 d~~~~l~~L~~~l~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~d~ivv~dg~  396 (564)
T 2q28_A          321 DIASSMQGMLAELKQNTF--TTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLR--ENQDIYLVNEGA  396 (564)
T ss_dssp             CHHHHHHHHHHHHHHSCC--CCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHT--TCTTCEEEEESS
T ss_pred             CHHHHHHHHHHHhhhcCc--CCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhc--CCCCEEEEECCc
Confidence            999999999988765311  1245687776655544432222212223457888889999988883  156788898998


Q ss_pred             hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          408 NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++.++.+.++....|++++.++++|+||+++|+|+|++++ |+++||+++|||||+|+.|||+|++|+++|+++|
T Consensus       397 ~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~iv  470 (564)
T 2q28_A          397 NTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIV  470 (564)
T ss_dssp             HHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred             hHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence            8888888777778889999898999999999999999999 8999999999999999999999999999998764

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=100.00  E-value=2.3e-86  Score=707.37  Aligned_cols=462  Identities=41%  Similarity=0.744  Sum_probs=398.2

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      ..++++++|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         8 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~   87 (568)
T 2c31_A            8 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNG   87 (568)
T ss_dssp             CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence            56899999999999999999999999999999999987789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD  169 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~  169 (482)
                      ++||++|+.+++|||+|+|+++....+  ++.+|++||..+|++++||++++++++++++.+++|++.|.++|||||||+
T Consensus        88 ~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~  167 (568)
T 2c31_A           88 VTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVD  167 (568)
T ss_dssp             HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEEe
Confidence            999999999999999999999999887  689999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590          170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF  249 (482)
Q Consensus       170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv  249 (482)
                      ||.|++.++++.........  + ...+...+.++++.+++++++|.+||||+|++|+++.++++.+++.+|||++|+||
T Consensus       168 iP~dv~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv  244 (568)
T 2c31_A          168 LPAKLFGQTISVEEANKLLF--K-PIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPF  244 (568)
T ss_dssp             EETHHHHCEEEHHHHHHHCC--C-CSCSSCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE
T ss_pred             CCHHHhhccccccccccccc--c-ccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHHhCCCE
Confidence            99999877655321000000  0 00011233567788999999999999999999999988899999999999999999


Q ss_pred             eeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCC-CCCcEEEEeCCchhhcccC-CceeEec
Q 011590          250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVDVCKEEIELRK-PHLGLVG  327 (482)
Q Consensus       250 ~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~-~~~~ii~id~d~~~~~~~~-~~~~i~~  327 (482)
                      ++|+++||.+|++||+++|...++++++||+||.||+++++..++++...|. +++++||||.|+.+++..+ .++.+++
T Consensus       245 ~~t~~~~g~~~~~~p~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~  324 (568)
T 2c31_A          245 LPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVG  324 (568)
T ss_dssp             EECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEES
T ss_pred             EecccccccCCCCChhhcchHHHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeC
Confidence            9999999999999999999988889999999999999998776656555565 6889999999999997665 4999999


Q ss_pred             cHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcC--CCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590          328 DAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKD--VVPFNFMTPMRIIRDAILGVGSPAPILVSE  405 (482)
Q Consensus       328 D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e  405 (482)
                      |++.+|++|.+.++...   .....|.+.+.+.++++...........  ..++++..+++.|++.++ . |++.++++|
T Consensus       325 d~~~~l~~L~~~l~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~iv~~d  399 (568)
T 2c31_A          325 DIKSAVSLLRKALKGAP---KADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFML-A-NPDISLVNE  399 (568)
T ss_dssp             CHHHHHHHHHHHHTTCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHH-H-CCSSEEEEE
T ss_pred             CHHHHHHHHHHhhhhcC---CCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhc-C-CCCeEEEEC
Confidence            99999999998875431   1245687766555444332222111122  456888889999988873 1 567889999


Q ss_pred             chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       406 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+++.++.+.++....|++++.++++|+||+++|+|+|++++ |+++||+++|||||+|+.|||+|++|+++|+++|
T Consensus       400 g~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~iv  475 (568)
T 2c31_A          400 GANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYNLPVTVI  475 (568)
T ss_dssp             SSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred             ChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence            988888888777778889999999999999999999999999 8999999999999999999999999999998764

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=100.00  E-value=1.8e-84  Score=696.33  Aligned_cols=455  Identities=22%  Similarity=0.380  Sum_probs=391.0

Q ss_pred             cCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590            8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG   85 (482)
Q Consensus         8 ~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G   85 (482)
                      ++++.+++++++|++.|+++||+||||+||+.+++|+++|.+  .+|++|.++||++|+|||+||+|+||||+||++|+|
T Consensus         5 ~~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsG   84 (603)
T 4feg_A            5 QTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG   84 (603)
T ss_dssp             ----CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTT
T ss_pred             CCCcCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCC
Confidence            445678999999999999999999999999999999999986  479999999999999999999999999999999999


Q ss_pred             hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCce
Q 011590           86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGG  165 (482)
Q Consensus        86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gP  165 (482)
                      ||++|+++||++|+.+++|||+|+|++++...+++.+|++||..+|++++||++++.+++++++.+++||+.|.+ ++||
T Consensus        85 pG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GP  163 (603)
T 4feg_A           85 PGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGV  163 (603)
T ss_dssp             HHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSE
T ss_pred             chHHHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998 5699


Q ss_pred             EEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh
Q 011590          166 CYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST  245 (482)
Q Consensus       166 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~  245 (482)
                      |||+||.|++..+++.........    .......+.++++.+++++++|.+||||+|++|.|+  +++.+++.+|||++
T Consensus       164 V~l~iP~dv~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~~  237 (603)
T 4feg_A          164 AVVQIPVDLPWQQIPAEDWYASAN----SYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTL  237 (603)
T ss_dssp             EEEEEETTGGGSEEETTTCCCCGG----GCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHHH
T ss_pred             EEEEeChhhhhccCCccccccccc----ccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHHH
Confidence            999999999988875432110000    000123445678899999999999999999999998  57899999999999


Q ss_pred             CCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc
Q 011590          246 GIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL  318 (482)
Q Consensus       246 g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~  318 (482)
                      |+||++|++|||.||++||+|+|.       ..++++++||+||.||+++++.   .+...|++++++||||.|+.+++.
T Consensus       238 ~~PV~~t~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~---~~~~~~~~~~~~i~id~d~~~~~~  314 (603)
T 4feg_A          238 KIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFA---EVSKAFKNTRYFLQIDIDPAKLGK  314 (603)
T ss_dssp             TCCEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTTT---TTTTTTTTCSEEEEEESCGGGTTS
T ss_pred             CCCEEEcCccccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCcc---cccccCCCCCeEEEEeCCHHHhCC
Confidence            999999999999999999999985       3567899999999999999852   223346678999999999999976


Q ss_pred             cC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590          319 RK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS  397 (482)
Q Consensus       319 ~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  397 (482)
                      .. +++.+++|++.+|++|.+.+...     ....|.+.+.+.+++|.............++++.++++.|++.+    +
T Consensus       315 ~~~~~~~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~  385 (603)
T 4feg_A          315 RHKTDIAVLADAQKTLAAILAQVSER-----ESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIA----E  385 (603)
T ss_dssp             SSCCSEEEESCHHHHHHHHHHTCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHC----C
T ss_pred             ccCCCEEEEeCHHHHHHHHHHhhhcc-----CChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhC----C
Confidence            54 59999999999999999987643     23457766555555554433332233456789999999999988    9


Q ss_pred             CCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590          398 PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI  476 (482)
Q Consensus       398 ~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~  476 (482)
                      ++++++.| |.+..|..++ ++...+++|+.++++|+||+++|+|+|++++.|+++||+++|||||+|+.|||+|+++++
T Consensus       386 ~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~  464 (603)
T 4feg_A          386 PDAIYSIDVGDINLNANRH-LKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYH  464 (603)
T ss_dssp             TTCEEEECSSHHHHHHHHH-CCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTT
T ss_pred             CCCEEEECCchHHHHHHHh-ceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHC
Confidence            99999988 5566666664 577788899999899999999999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 011590          477 IMISSI  482 (482)
Q Consensus       477 l~i~~~  482 (482)
                      +|+++|
T Consensus       465 lp~~~v  470 (603)
T 4feg_A          465 LPVINV  470 (603)
T ss_dssp             CCCEEE
T ss_pred             cCeEEE
Confidence            998764

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=100.00  E-value=8.7e-85  Score=692.17  Aligned_cols=445  Identities=20%  Similarity=0.284  Sum_probs=385.2

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      +++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~   81 (549)
T 3eya_A            2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL   81 (549)
T ss_dssp             CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred             CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence            4799999999999999999999999999999999986 489999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ++||++|+.+++|||+|+|+++....+.+.+|++||..+|+++|||++++.+++++++.+++|++.|.++ +|||||+||
T Consensus        82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP  160 (549)
T 3eya_A           82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGVSVVVLP  160 (549)
T ss_dssp             HHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSEEEEEEE
T ss_pred             HHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999996 599999999


Q ss_pred             cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590          172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP  251 (482)
Q Consensus       172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~  251 (482)
                      .|++..+++........      ....+...++++.+++++++|.+||||+|++|.|+  .++.+++.+|||++|+||++
T Consensus       161 ~dv~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~--~~a~~~l~~lae~~~~Pv~~  232 (549)
T 3eya_A          161 GDVALKPAPEGATMHWY------HAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGC--AGAHKELVEFAGKIKAPIVH  232 (549)
T ss_dssp             HHHHTSBCCTTCCCCCC------CCCCCEEECCHHHHHHHHHHHHTCCSEEEEECGGG--TTCHHHHHHHHHHHTCCEEE
T ss_pred             hhHhhcccCcccccccc------ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCc--hHHHHHHHHHHHHhCCCEEE
Confidence            99998887643211000      00112234567899999999999999999999998  47889999999999999999


Q ss_pred             CCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590          252 TPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL  323 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~  323 (482)
                      |++|||.||++||+++|.       ..++++++||+||.||+++++..      .+++++++||||.|+.+++... .++
T Consensus       233 t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~~------~~~~~~~~i~id~d~~~~~~~~~~~~  306 (549)
T 3eya_A          233 ALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRA------FYPTDAKIIQIDINPASIGAHSKVDM  306 (549)
T ss_dssp             CGGGHHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCGG------GSCSSSEEEEEESCGGGTTSSSCCSE
T ss_pred             CCccCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCccc------cCCCCCeEEEEeCCHHHhCCCCCCCe
Confidence            999999999999999984       35678999999999999987532      1356789999999999997654 599


Q ss_pred             eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590          324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV  403 (482)
Q Consensus       324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v  403 (482)
                      .+++|++.+|++|.+.+...     ....|.+.+.+.++++....+........++++..+++.|++.+    +++++++
T Consensus       307 ~i~~d~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ivv  377 (549)
T 3eya_A          307 ALVGDIKSTLRALLPLVEEK-----ADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFA----ADDAIFT  377 (549)
T ss_dssp             EEECCHHHHHHHHGGGSCCC-----CCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHS----CTTCEEE
T ss_pred             EEEeCHHHHHHHHHHhcccc-----CcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhC----CCCCEEE
Confidence            99999999999999887643     23468776655555554433322222345788899999999988    9999999


Q ss_pred             eC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          404 SE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       404 ~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      .| |.+..|..++ ++...+++++.++++|+||+++|+|+|+++|.|+++||+++|||||+|+.|||+|++|+++|+++|
T Consensus       378 ~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv  456 (549)
T 3eya_A          378 CDVGTPTVWAARY-LKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIV  456 (549)
T ss_dssp             ECTTHHHHHHHHH-CCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEE
T ss_pred             EcCcHHHHHHHHh-CccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence            88 5556666554 577788999999899999999999999999999999999999999999999999999999998764

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=100.00  E-value=1.3e-83  Score=685.09  Aligned_cols=452  Identities=24%  Similarity=0.373  Sum_probs=379.8

Q ss_pred             CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590           10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV   89 (482)
Q Consensus        10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~   89 (482)
                      ....++++++|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus         7 ~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~   86 (566)
T 1ozh_A            7 VRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCS   86 (566)
T ss_dssp             CEEESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHH
T ss_pred             ccccCcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHH
Confidence            34458999999999999999999999999999999999877899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD  169 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~  169 (482)
                      |+++||++|+.+++|||+|+|+++....+++.+|++||..+|++++||++++.+++++++.+++|++.|.++|||||||+
T Consensus        87 N~~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~  166 (566)
T 1ozh_A           87 NLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVS  166 (566)
T ss_dssp             TTHHHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590          170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF  249 (482)
Q Consensus       170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv  249 (482)
                      ||.|++.++.+..... .+       .....+.++++.+++++++|.+||||+|++|+++.++++.+++.+|||++|+||
T Consensus       167 iP~dv~~~~~~~~~~~-~~-------~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv  238 (566)
T 1ozh_A          167 LPQDVVDGPVSGKVLP-AS-------GAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPV  238 (566)
T ss_dssp             EEHHHHHSCEEECCCC-CC-------CSCEECCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCE
T ss_pred             eChhhhhccccccccc-cc-------cccCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCE
Confidence            9999987765421100 00       011123566788999999999999999999999998999999999999999999


Q ss_pred             eeCCCCCCCCCCCCC-cccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccC
Q 011590          250 LPTPMGKGLLPDTHP-LAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRK  320 (482)
Q Consensus       250 ~~t~~~~g~~~~~hp-~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~  320 (482)
                      ++|+++||.+|++|| +++|.       ..++++++||+||.||+++..+..    ..| .+++++||||.|+.+++...
T Consensus       239 ~~t~~~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~----~~~~~~~~~~i~id~d~~~~~~~~  314 (566)
T 1ozh_A          239 TSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEP----AMWNSGNATLVHIDVLPAYEERNY  314 (566)
T ss_dssp             EECGGGTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCGGGSCG----GGTCCSCSEEEEEESSCCCCBTTB
T ss_pred             EEccccCCcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCCCcCCc----cccCCCCCcEEEEeCCHHHhCCCC
Confidence            999999999999999 99874       246788999999999996543222    223 24689999999999997665


Q ss_pred             -CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCC-CCcccHHHHHHHHHhccCCC
Q 011590          321 -PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVP-FNFMTPMRIIRDAILGVGSP  398 (482)
Q Consensus       321 -~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~  398 (482)
                       +++.+.+|++.+|++|.+.+...    .....|.+.+.+.++++.............+ +++..+++.|++.+    ++
T Consensus       315 ~~~~~i~~d~~~~l~~L~~~l~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l----~~  386 (566)
T 1ozh_A          315 TPDVELVGDIAGTLNKLAQNIDHR----LVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIV----NS  386 (566)
T ss_dssp             CCSEEEESCHHHHHHHHHHTCCSC----CCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHC----CT
T ss_pred             CCCEEEEeCHHHHHHHHHHhcccc----CCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhC----CC
Confidence             59999999999999999877532    1224587766555444322111111122345 88888999999888    99


Q ss_pred             CcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590          399 APILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII  477 (482)
Q Consensus       399 ~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l  477 (482)
                      +++++.| |.+..|..+ +++...|++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++++++
T Consensus       387 ~~iv~~d~G~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l  465 (566)
T 1ozh_A          387 DVTLTVDMGSFHIWIAR-YLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKA  465 (566)
T ss_dssp             TEEEEECSSHHHHHHHH-TGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTC
T ss_pred             CCEEEEcCcHHHHHHHH-hcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCC
Confidence            9999988 555566655 45777899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 011590          478 MISSI  482 (482)
Q Consensus       478 ~i~~~  482 (482)
                      |+++|
T Consensus       466 ~~~iv  470 (566)
T 1ozh_A          466 NVLHL  470 (566)
T ss_dssp             CEEEE
T ss_pred             CcEEE
Confidence            98764

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=100.00  E-value=4.2e-83  Score=690.56  Aligned_cols=463  Identities=24%  Similarity=0.376  Sum_probs=381.7

Q ss_pred             ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590           11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV   89 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~   89 (482)
                      ...++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus        79 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~  158 (677)
T 1t9b_A           79 FVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGAT  158 (677)
T ss_dssp             TTTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHH
T ss_pred             ccCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHH
Confidence            446799999999999999999999999999999999975 5799999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD  169 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~  169 (482)
                      |+++||++|+.+++|||+|+|++++..++.+.+|++||..++++++||++++++++++++.+++||+.|.++|||||||+
T Consensus       159 N~~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~  238 (677)
T 1t9b_A          159 NVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVD  238 (677)
T ss_dssp             TTHHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhccccChhHHH--HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcccc-ccHHHHHHHHHHhC
Q 011590          170 LPTDVLHQTISVSEAE--KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA-RAEGELKKLVESTG  246 (482)
Q Consensus       170 iP~dv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~-~~~~~l~~lae~~g  246 (482)
                      ||.|++.++++++...  ..+..............+.++.+++++++|.+||||+|++|.|+.++ .+.++|.+|||++|
T Consensus       239 lP~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~  318 (677)
T 1t9b_A          239 LPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQ  318 (677)
T ss_dssp             EEHHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTT
T ss_pred             cCHHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHHHHHhC
Confidence            9999988765421100  01000000000000112335689999999999999999999999766 46789999999999


Q ss_pred             CcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCc---------EEEEe
Q 011590          247 IPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK---------FVLVD  310 (482)
Q Consensus       247 ~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~---------ii~id  310 (482)
                      +||++|.+|||+||++||+++|.       ..++++++||+||.||+++++..+ ++...|.++.+         +||||
T Consensus       319 ~PV~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t-~~~~~~~~~~~~~~~~~~~~iI~id  397 (677)
T 1t9b_A          319 IPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVT-GNISKFAPEARRAAAEGRGGIIHFE  397 (677)
T ss_dssp             CCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTS-CSGGGSSHHHHHHHHTTSCEEEEEE
T ss_pred             CCeeeccccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCcccc-cCccccCcccccccccCCceEEEEE
Confidence            99999999999999999998774       346788999999999999987643 44444555566         99999


Q ss_pred             CCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHH
Q 011590          311 VCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR  389 (482)
Q Consensus       311 ~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  389 (482)
                      +|+.+++... .++.+.+|+..+|++|.+.+...    ..+..|.+.+.++++++....  ....+..++++..+++.|+
T Consensus       398 id~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~~----~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~l~~~~v~~~L~  471 (677)
T 1t9b_A          398 VSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPV----KERSEWFAQINKWKKEYPYAY--MEETPGSKIKPQTVIKKLS  471 (677)
T ss_dssp             SCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCCC----CCCHHHHHHHHHHHHHSCCCC--CCCCTTCCBCHHHHHHHHH
T ss_pred             CCHHHhCCcccCCEEEeCCHHHHHHHHHHHhhcc----ccchHHHHHHHHHHHhccccc--ccccCCCCcCHHHHHHHHH
Confidence            9999997655 49999999999999999887541    134568776655544331000  0011234578888999999


Q ss_pred             HHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHH
Q 011590          390 DAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE  468 (482)
Q Consensus       390 ~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~e  468 (482)
                      +.+... +++.|++.+ |.+.+|..+ +++...|++|+.++++|+|||++|+|+|+++|.|+++||+|+|||||+|+.||
T Consensus       472 ~~l~~~-~~~~iv~~~vg~~~~~~~~-~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~e  549 (677)
T 1t9b_A          472 KVANDT-GRHVIVTTGVGQHQMWAAQ-HWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTE  549 (677)
T ss_dssp             HHHHTT-CSCEEEEECSSHHHHHHHH-HSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGG
T ss_pred             HHhhcC-CCCEEEEeCCchHHHHHHH-hcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhccHHH
Confidence            988322 445666666 445566555 45777899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcccccC
Q 011590          469 VEVWLSCIIMISSI  482 (482)
Q Consensus       469 L~T~~r~~l~i~~~  482 (482)
                      |+|++|+++|+++|
T Consensus       550 L~ta~~~~l~v~iv  563 (677)
T 1t9b_A          550 LSSAVQAGTPVKIL  563 (677)
T ss_dssp             HHHHHHHTCCCEEE
T ss_pred             HHHHHHhCCCeEEE
Confidence            99999999998754

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=100.00  E-value=4.1e-83  Score=681.60  Aligned_cols=455  Identities=23%  Similarity=0.364  Sum_probs=383.5

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      .+++++++|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus         2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~   81 (563)
T 2uz1_A            2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA   81 (563)
T ss_dssp             CEEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred             CccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence            35799999999999999999999999999999999976569999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      ++||++|+.+++|||+|+|+++....+++.+|+ +||..+|++++||+.++++++++++.+++|++.|.++|||||||+|
T Consensus        82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~i  161 (563)
T 2uz1_A           82 VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDL  161 (563)
T ss_dssp             HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence            999999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             Ccchhccc-cChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590          171 PTDVLHQT-ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF  249 (482)
Q Consensus       171 P~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv  249 (482)
                      |.|++.++ .+...  ..+.    .......+.++++.+++++++|.++|||+|++|.++.++++.+++.+|||++|+||
T Consensus       162 P~dv~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv  235 (563)
T 2uz1_A          162 PWDILMNQIDEDSV--IIPD----LVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPV  235 (563)
T ss_dssp             EHHHHHCEEEGGGS--CCCC----CCCCSSCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCE
T ss_pred             CHHHhhhhcccccc--cccc----cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcE
Confidence            99966543 22110  0000    00011133456788999999999999999999999998899999999999999999


Q ss_pred             eeCCCCCCCCCCC-CCcccchHH------HHhhhcCCEEEEecCccCcccccCCCCCCCC-CCcEEEEeCCchhhcccC-
Q 011590          250 LPTPMGKGLLPDT-HPLAATAAR------SLAIGQCDVALVVGARLNWLLHFGEPPKWSK-DVKFVLVDVCKEEIELRK-  320 (482)
Q Consensus       250 ~~t~~~~g~~~~~-hp~~~G~~~------~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~-~~~ii~id~d~~~~~~~~-  320 (482)
                      ++|+++||.+|++ ||+|+|..+      ++ +++||+||.||+++.+..+. .+..|.+ +.++||||.|+.+++... 
T Consensus       236 ~~t~~~~g~~~~~~~p~~~G~~g~~~~~~~~-~~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~  313 (563)
T 2uz1_A          236 FADYEGLSMLSGLPDAMRGGLVQNLYSFAKA-DAAPDLVLMLGARFGLNTGH-GSGQLIPHSAQVIQVDPDACELGRLQG  313 (563)
T ss_dssp             EECGGGGGGGTTSCGGGEEEEGGGGGGTTTT-TCCCSEEEEESCCSSGGGTT-TSCSSSCTTSEEEEECSCGGGTTSSSC
T ss_pred             EEcCcccCcCCCCCChhhcCCCCCCCHHHHh-hcCCCEEEEECCCCcccccc-cccccCCCCCeEEEEECCHHHhCCCCC
Confidence            9999999999999 999998543      34 88999999999999986643 3334545 789999999999997654 


Q ss_pred             CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHH-HHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCC
Q 011590          321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK-KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA  399 (482)
Q Consensus       321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  399 (482)
                      .++.+++|++.+|++|.+.++.... ......|.+.+.+ .++++........ ... ++++..+++.|++.+    |++
T Consensus       314 ~~~~i~~d~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~l----~~~  386 (563)
T 2uz1_A          314 IALGIVADVGGTIEALAQATAQDAA-WPDRGDWCAKVTDLAQERYASIAAKSS-SEH-ALHPFHASQVIAKHV----DAG  386 (563)
T ss_dssp             CSEEECSCHHHHHHHHHHHHTTSCC-CCCCHHHHHHHHHHHHHHHHHHHHHCC-CSS-SCCHHHHHHHHHTTC----STT
T ss_pred             CCeEEEcCHHHHHHHHHHhhhhccc-ccCcHHHHHHHHHHHHHHhHhhhhccc-cCC-CcCHHHHHHHHHHhC----CCC
Confidence            5999999999999999988754200 0123457765554 4433321110100 122 688888888888777    899


Q ss_pred             cEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhC--CCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590          400 PILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIAC--PERLVVAVEGDSGFGFSAVEVEVWLSCI  476 (482)
Q Consensus       400 ~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~--p~~~vi~~~GDGsf~~~~~eL~T~~r~~  476 (482)
                      ++++.|.+ ++.|..+ +|....+++++.++++|+||+++|+|+|+++|.  |+++|++++|||+|+|+.|||+|+++++
T Consensus       387 ~iv~~d~G~~~~~~~~-~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~~  465 (563)
T 2uz1_A          387 VTVVADGALTYLWLSE-VMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQ  465 (563)
T ss_dssp             EEEEECSSHHHHHHHH-HHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHHT
T ss_pred             cEEEEcCchHHHHHHH-hccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHhC
Confidence            99999954 4566655 467788999999999999999999999999998  8999999999999999999999999999


Q ss_pred             cccccC
Q 011590          477 IMISSI  482 (482)
Q Consensus       477 l~i~~~  482 (482)
                      +|+++|
T Consensus       466 l~~~iv  471 (563)
T 2uz1_A          466 LPLIVI  471 (563)
T ss_dssp             CCCEEE
T ss_pred             CCeEEE
Confidence            998754

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=100.00  E-value=1.5e-82  Score=680.11  Aligned_cols=451  Identities=22%  Similarity=0.306  Sum_probs=382.5

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV   89 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~   89 (482)
                      ..++++++|++.|+++||++|||+||+.+++|++++.+  .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus         2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~   81 (589)
T 2pgn_A            2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNL   81 (589)
T ss_dssp             CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGG
T ss_pred             CCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHH
Confidence            45799999999999999999999999999999999986  4699999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCcccCCCC-CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRG-DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL  168 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l  168 (482)
                      |+++||++|+.+++|||+|+|+++....+++ .+|++||.. |++++||++++++++++++.+++||+.|.++|||||||
T Consensus        82 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l  160 (589)
T 2pgn_A           82 LLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYV  160 (589)
T ss_dssp             GCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEE
Confidence            9999999999999999999999999999999 999999999 99999999999999999999999999999999999999


Q ss_pred             EcCcchhccccChhHHHHHHHhhhhhcccccC--CCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590          169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQ--GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG  246 (482)
Q Consensus       169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g  246 (482)
                      +||.|++.++++....  .+.    .......  ..++ +.+++++++|.+||||+|++|+++.++++.+++.+|||++|
T Consensus       161 ~iP~dv~~~~~~~~~~--~~~----~~~~~~~~~~~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~  233 (589)
T 2pgn_A          161 DIPFDLTADQIDDKAL--VPR----GATRAKSVLHAPN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVG  233 (589)
T ss_dssp             EEETHHHHCEEECTTT--SCC----CCCCCCCCCCCCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHT
T ss_pred             EeCHhhhhcccccccc--ccc----ccccCCccCCChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHHhC
Confidence            9999998765442100  000    0000011  1233 77999999999999999999999988899999999999999


Q ss_pred             CcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590          247 IPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR  319 (482)
Q Consensus       247 ~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~  319 (482)
                      +||++|+++||.+|++||+++|.       ..++++++||+||.||+++.++.+.  +..|.+++++||||.|+.+++..
T Consensus       234 ~Pv~~t~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~--~~~~~~~~~~i~id~d~~~~~~~  311 (589)
T 2pgn_A          234 VPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIA--QGYITKMPKFVHVDTDPAVLGTF  311 (589)
T ss_dssp             CCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT--TTTTCCCCSEEEEESCGGGTTSS
T ss_pred             CCEEEccccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccccccc--ccccCCCCeEEEEeCCHHHHCCC
Confidence            99999999999999999999984       3467889999999999999876543  34565678999999999999765


Q ss_pred             C-CceeEeccHHHHHHHHHHhhhcCCCCC----CCChHHH--HHHHH-HHHHhHHHHHHhhh-cCCCCCCcccHHHHHHH
Q 011590          320 K-PHLGLVGDAKKVLEMINKEIKDEPFCL----GKNHPWV--EAIWK-KTKDNVLKMEVQLA-KDVVPFNFMTPMRIIRD  390 (482)
Q Consensus       320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~----~~~~~w~--~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~  390 (482)
                      . +++.+++|++.+|++|.+.+.......    .....|.  +.+.+ .++ .    ..... .+..++++..+++.|++
T Consensus       312 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~~~l~~  386 (589)
T 2pgn_A          312 YFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-W----VREQESGDGMPASMFRAMAEVRK  386 (589)
T ss_dssp             SCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-H----HHHHTCCCCSSCCHHHHHHHHHH
T ss_pred             cCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-H----HhhhccCCCCCcCHHHHHHHHHH
Confidence            5 599999999999999998775310000    1224576  54443 222 1    10111 13456888888888888


Q ss_pred             HHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHH
Q 011590          391 AILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV  469 (482)
Q Consensus       391 ~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL  469 (482)
                      .+    +++++++.| |.+..|..++ ++...|++++.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||
T Consensus       387 ~l----~~~~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L  461 (589)
T 2pgn_A          387 VQ----RPEDIIVTDIGNHTLPMFGG-AILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEF  461 (589)
T ss_dssp             TC----CTTCEEEECSSTTHHHHHHH-CCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGH
T ss_pred             hC----CCCCEEEEcCchHHHHHHHh-cccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHH
Confidence            87    999999988 5556676654 57788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCcccccC
Q 011590          470 EVWLSCIIMISSI  482 (482)
Q Consensus       470 ~T~~r~~l~i~~~  482 (482)
                      +|++++++|+++|
T Consensus       462 ~ta~~~~l~~~iv  474 (589)
T 2pgn_A          462 RVAVEHKLPVITM  474 (589)
T ss_dssp             HHHHHTTCCCEEE
T ss_pred             HHHHHhCCCeEEE
Confidence            9999999998764

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=100.00  E-value=2.2e-81  Score=670.71  Aligned_cols=448  Identities=20%  Similarity=0.281  Sum_probs=383.1

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      +++++++|++.|+++||++|||+||+.+++|++++.+  .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus         3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N   82 (590)
T 1v5e_A            3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH   82 (590)
T ss_dssp             EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred             CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence            4789999999999999999999999999999999975  47999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++|+.+++|||+|+|+++....+++.+|++||..+|++++||+.++.+++++++.+++||+.|.++||||||| |
T Consensus        83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-i  161 (590)
T 1v5e_A           83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-V  161 (590)
T ss_dssp             THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             CcchhccccChhHHH-HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590          171 PTDVLHQTISVSEAE-KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF  249 (482)
Q Consensus       171 P~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv  249 (482)
                      |.|++..+++..... .... .   ....+. .++.+.+++++++|.++|||+|++|+|+ + ++.+++.+|||++|+||
T Consensus       162 P~dv~~~~~~~~~~~~~~~~-~---~~~~~~-~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~lae~~~~Pv  234 (590)
T 1v5e_A          162 PGDFAKVEIDNDQWYSSANS-L---RKYAPI-APAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQELARKIKAPV  234 (590)
T ss_dssp             ETTGGGCEEEGGGCCCCGGG-C---CCCCCC-CCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHHHHHHHTCCE
T ss_pred             ccchhhcccCcccccccccc-c---ccCCCC-CCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHHHHHHHCCCE
Confidence            999987765421100 0000 0   000111 4567889999999999999999999999 7 88999999999999999


Q ss_pred             eeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590          250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P  321 (482)
Q Consensus       250 ~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~  321 (482)
                      ++|+++||.||++||+++|.       ..++++++||+||+||+++++...++..  | ++.++||||.|+.++++.. +
T Consensus       235 ~~t~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d~~~~~~~~~~  311 (590)
T 1v5e_A          235 ITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDIDPAMLGKRHHA  311 (590)
T ss_dssp             EECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESCGGGTTSSSCC
T ss_pred             EEccccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCCHHHHCCCcCC
Confidence            99999999999999999985       3567899999999999999876532321  4 5789999999999997665 5


Q ss_pred             ceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhh-cCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590          322 HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLA-KDVVPFNFMTPMRIIRDAILGVGSPAP  400 (482)
Q Consensus       322 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~  400 (482)
                      ++.+++|++.+|++|.+.+...     ....|.+.+.+.++++. ....... ....++++.++++.|++.+    |+++
T Consensus       312 ~~~i~gd~~~~l~~L~~~l~~~-----~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~  381 (590)
T 1v5e_A          312 DVAILGDAALAIDEILNKVDAV-----EESAWWTANLKNIANWR-EYINMLETKEEGDLQFYQVYNAINNHA----DEDA  381 (590)
T ss_dssp             SEEEESCHHHHHHHHHHHSCCC-----CCCHHHHHHHHHHHHHH-HHHHHHHTCCSSBCCHHHHHHHHHHHS----CTTC
T ss_pred             CeEEEcCHHHHHHHHHHhhccC-----CcHHHHHHHHHHHHHhH-hhhhhcccCCCCCcCHHHHHHHHHhhC----CCCC
Confidence            9999999999999999887532     22458766655544432 1111100 1345688889999999988    9999


Q ss_pred             EEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          401 ILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       401 i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      +++.| |.+..|..+ +++...|++++.+.++|+||+++|+|+|+++|.|+++|++++|||+|+|+.|||+|++++++|+
T Consensus       382 ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~  460 (590)
T 1v5e_A          382 IYSIDVGNSTQTSIR-HLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPV  460 (590)
T ss_dssp             EEEECSSHHHHGGGG-TCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCC
T ss_pred             EEEECCchHHHHHHH-hcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCC
Confidence            99988 555555544 5677889999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       461 ~iv  463 (590)
T 1v5e_A          461 INV  463 (590)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=100.00  E-value=2.6e-82  Score=676.45  Aligned_cols=446  Identities=22%  Similarity=0.272  Sum_probs=377.0

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcC-hHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIP-VTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~-~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      +++++++|++.|+++||++|||+||+. +++|++++. . |++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus        11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~   88 (573)
T 2iht_A           11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL   88 (573)
T ss_dssp             CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred             CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence            479999999999999999999999999 999999988 4 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCC-CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGR-GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~-~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      ++||++|+.+++|||+|+|+++....++ +.+|++||..+|++++||+.++++++++++.+++|++.|.++|||||||+|
T Consensus        89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i  168 (573)
T 2iht_A           89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISL  168 (573)
T ss_dssp             HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred             HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            9999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             Ccchhccc------cChhHHHHHHHhhhhhcccccC--CCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHH
Q 011590          171 PTDVLHQT------ISVSEAEKLLKEAESAKETVTQ--GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV  242 (482)
Q Consensus       171 P~dv~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~la  242 (482)
                      |.|++..+      ++...  ..+      ...+..  +.++++.+++++++|.+||||+|++|.++.++++.+++.+||
T Consensus       169 P~dv~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~la  240 (573)
T 2iht_A          169 PVDLLGSSEGIDTTVPNPP--ANT------PAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALA  240 (573)
T ss_dssp             EHHHHTCCTTCC---CCCC--CCC------CSSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHH
T ss_pred             cchHhhhhhcccccCCccc--ccc------CCCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHHHH
Confidence            99998765      22110  000      000111  135567899999999999999999999998889999999999


Q ss_pred             HHhCCcEeeCCCCCCCCCCCCCcccchH------------HHHhhhcCCEEEEecCc-cCcccccCCCCCCCCCCcEEEE
Q 011590          243 ESTGIPFLPTPMGKGLLPDTHPLAATAA------------RSLAIGQCDVALVVGAR-LNWLLHFGEPPKWSKDVKFVLV  309 (482)
Q Consensus       243 e~~g~pv~~t~~~~g~~~~~hp~~~G~~------------~~~~l~~aDlvl~iG~~-~~~~~~~g~~~~~~~~~~ii~i  309 (482)
                      |++|+||++|+++||.+|++||+++|..            .++++++||+||.||++ +.++.+..+. . .+++++|||
T Consensus       241 e~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~-~~~~~~i~i  318 (573)
T 2iht_A          241 ERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQ-K-GIEKKTVRI  318 (573)
T ss_dssp             HHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHC-C-SSCCEEEEE
T ss_pred             HHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccC-C-CCCCeEEEE
Confidence            9999999999999999999999998853            34678999999999999 8655443222 1 156899999


Q ss_pred             eCCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHH
Q 011590          310 DVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRII  388 (482)
Q Consensus       310 d~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  388 (482)
                      |.|+.+++... +++.+++|++.+|++|.+.+....     ...| +.+.+.++++..... ....+..++++..+++.|
T Consensus       319 d~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~w-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l  391 (573)
T 2iht_A          319 SPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFG-----AKQR-HDIEPLRARIAEFLA-DPETYEDGMRVHQVIDSM  391 (573)
T ss_dssp             ESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTCC-----CCCC-CCCHHHHHHHHHHHT-CCCCCSSSBCHHHHHHHH
T ss_pred             eCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhccccC-----chhH-HHHHHHHHHhhhhhh-ccccCcCCcCHHHHHHHH
Confidence            99999997664 599999999999999998775421     1234 322222222211110 111123468889999999


Q ss_pred             HHHHhccCCC-----CcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590          389 RDAILGVGSP-----APILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF  462 (482)
Q Consensus       389 ~~~l~~~~~~-----~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf  462 (482)
                      ++.+    |+     +++++.| |.+..|..+ +++...|++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|
T Consensus       392 ~~~l----~~~~~~~~~iv~~d~G~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~  466 (573)
T 2iht_A          392 NTVM----EEAAEPGEGTIVSDIGFFRHYGVL-FARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGF  466 (573)
T ss_dssp             HHHH----HHHSCTTCCEEEECSSHHHHHHHH-HCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHH
T ss_pred             HHhc----ccccCCCCcEEEEcCcHhHHHHHH-hcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHH
Confidence            9998    77     8999888 556666655 45777889999998999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCcccccC
Q 011590          463 GFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       463 ~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|+.|||+|++++++|+++|
T Consensus       467 ~~~~~~L~~a~~~~l~~~iv  486 (573)
T 2iht_A          467 HSNSSDLETIARLNLPIVTV  486 (573)
T ss_dssp             HHTGGGHHHHHHHTCCCEEE
T ss_pred             HhHHHHHHHHHHhCCCeEEE
Confidence            99999999999999998754

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=100.00  E-value=8.6e-81  Score=659.13  Aligned_cols=441  Identities=19%  Similarity=0.241  Sum_probs=377.8

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      ++++++|++.|+++||++|||+||+.+++|++++. .+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus         2 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~   80 (528)
T 1q6z_A            2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMG   80 (528)
T ss_dssp             CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHH
T ss_pred             CcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHH
Confidence            58999999999999999999999999999999994 67999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      ||++|+.+++|||+|+|++++...+.+.+|+ +||..+|++++||+.++++++++++.+++|++.|.++|+|||||+||.
T Consensus        81 ~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~  160 (528)
T 1q6z_A           81 ALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPY  160 (528)
T ss_dssp             HHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred             HHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence            9999999999999999999999999999999 799999999999999999999999999999999999999999999999


Q ss_pred             chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE-ee
Q 011590          173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF-LP  251 (482)
Q Consensus       173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv-~~  251 (482)
                      |++..+.+... .....     ........++++.+++++++|.++|||+|++|.++.++++.+++.+|||++|+|| ++
T Consensus       161 d~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~~  234 (528)
T 1q6z_A          161 DDWDKDADPQS-HHLFD-----RHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA  234 (528)
T ss_dssp             GGTTSBCCGGG-GGGTT-----CCCCCCCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEEC
T ss_pred             hhhhCcccccc-ccccc-----cCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence            99877654321 00100     0011223467788999999999999999999999988899999999999999999 77


Q ss_pred             CCCCCCCCCCCCCcccch------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeE
Q 011590          252 TPMGKGLLPDTHPLAATA------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGL  325 (482)
Q Consensus       252 t~~~~g~~~~~hp~~~G~------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i  325 (482)
                      +.++||.+|++||+|+|.      ..++++++||+||.||+++.++.+.++...+++++++||||.|+.++++...++.+
T Consensus       235 ~~~g~g~~~~~~p~~~G~~g~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i  314 (528)
T 1q6z_A          235 PSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAI  314 (528)
T ss_dssp             SSCSBCCSCTTSTTEEEECCSCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHCSSSEEE
T ss_pred             ccCccccCCCCCccccCcCCCCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCCCCCeeE
Confidence            889999999999999985      34578899999999999998877655544456688999999999999766559999


Q ss_pred             eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590          326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE  405 (482)
Q Consensus       326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e  405 (482)
                      ++|++.+|++|.+.++.....  . ..|.+       +..     .......++++.++++.|++.+    |++++++.|
T Consensus       315 ~~d~~~~l~~L~~~~~~~~~~--~-~~~~~-------~~~-----~~~~~~~~~~~~~~~~~l~~~l----~~~~iv~~d  375 (528)
T 1q6z_A          315 VADIGAMASALANLVEESSRQ--L-PTAAP-------EPA-----KVDQDAGRLHPETVFDTLNDMA----PENAIYLNE  375 (528)
T ss_dssp             ESCHHHHHHHHHHHSCCCCSC--C-CCCCC-------CCC-----CCCCCSSSBCHHHHHHHHHHHS----CTTCEEEEE
T ss_pred             eCCHHHHHHHHHHHhhccccc--h-HHHHh-------hhh-----cccccCCCcCHHHHHHHHHhhC----CCCeEEEEC
Confidence            999999999999877532100  0 01110       000     0011234678888999998888    999999888


Q ss_pred             -chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          406 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       406 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                       |.+..|..+ +++...+++++.+.+ |+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++++++|+++|
T Consensus       376 ~g~~~~~~~~-~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~iv  451 (528)
T 1q6z_A          376 STSTTAQMWQ-RLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFV  451 (528)
T ss_dssp             CTTSHHHHHH-HCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEE
T ss_pred             CcccHHHHHH-hccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEE
Confidence             455656544 567777889999888 999999999999999999999999999999999999999999999998864

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=100.00  E-value=6.5e-81  Score=671.13  Aligned_cols=454  Identities=27%  Similarity=0.348  Sum_probs=381.7

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH   90 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N   90 (482)
                      +++++|+|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+| ||++||++|+|||++|
T Consensus        26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N  105 (616)
T 2pan_A           26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD  105 (616)
T ss_dssp             EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred             cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence            4689999999999999999999999999999999975 6799999999999999999999998 8999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++|+.+++|||+|+|+++....+++.+|++||..+|++++||++++.+++++++.+++|++.|.++|||||||+|
T Consensus       106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i  185 (616)
T 2pan_A          106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDL  185 (616)
T ss_dssp             SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590          171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL  250 (482)
Q Consensus       171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~  250 (482)
                      |.|++..+.+........       .+...+.+.++.+++++++|.++|||+|++|.|+.++++.+++.+|||++|+||+
T Consensus       186 P~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~  258 (616)
T 2pan_A          186 PFDVQVAEIEFDPDMYEP-------LPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVI  258 (616)
T ss_dssp             EHHHHHSEEECCGGGCCC-------CCCCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEE
T ss_pred             chhhhhcccccccccccc-------cccCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEE
Confidence            999987654321100000       0111123347789999999999999999999999888999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590          251 PTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P  321 (482)
Q Consensus       251 ~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~  321 (482)
                      +|+++||.+|++||+++|.        ..++++++||+||+||+++++..+ +++..|.++.++||||.|+.++++.. +
T Consensus       259 ~t~~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~  337 (616)
T 2pan_A          259 PTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHT-GSVEKYTEGRKIVHIDIEPTQIGRVLCP  337 (616)
T ss_dssp             ECTTTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHHH-SSHHHHHTTCEEEEEESCGGGTTSSSCC
T ss_pred             EccccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCccccc-CcccccCCCCeEEEEeCCHHHhCCCCCC
Confidence            9999999999999999884        456788999999999999986433 33333446789999999999997655 4


Q ss_pred             ceeEeccHHHHHHHHHHhhhcCCC-CCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590          322 HLGLVGDAKKVLEMINKEIKDEPF-CLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP  400 (482)
Q Consensus       322 ~~~i~~D~~~~l~~L~~~l~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  400 (482)
                      ++.+++|++.+|++|.+.++.... .......|++.+.+.+++...   ........++++..+++.|++.+    |+++
T Consensus       338 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~l----~~~~  410 (616)
T 2pan_A          338 DLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLL---RKTHFDNVPVKPQRVYEEMNKAF----GRDV  410 (616)
T ss_dssp             SSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSE---ECCCCCCSSBCHHHHHHHHHHHS----CTTE
T ss_pred             CeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhh---hccccCCCCcCHHHHHHHHHHhC----CCCc
Confidence            999999999999999887653100 001224565554333222110   00011234688888999999888    8999


Q ss_pred             EEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590          401 ILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI  479 (482)
Q Consensus       401 i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i  479 (482)
                      |++.|. .+..|..+ +++...|++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++++++|+
T Consensus       411 ivv~d~G~~~~~~~~-~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~  489 (616)
T 2pan_A          411 CYVTTIGLSQIAAAQ-MLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPY  489 (616)
T ss_dssp             EEEECSSHHHHHHHH-HCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCC
T ss_pred             EEEEcCcHHHHHHHH-hcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCe
Confidence            999984 45555544 4577788999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC
Q 011590          480 SSI  482 (482)
Q Consensus       480 ~~~  482 (482)
                      ++|
T Consensus       490 ~iv  492 (616)
T 2pan_A          490 IHV  492 (616)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=100.00  E-value=4.5e-81  Score=667.23  Aligned_cols=461  Identities=15%  Similarity=0.109  Sum_probs=368.3

Q ss_pred             ccccCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEc
Q 011590            5 ELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTV   83 (482)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t   83 (482)
                      ||+++.+..++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|
T Consensus         2 ~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~T   81 (578)
T 3lq1_A            2 SLTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCT   81 (578)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CcchHHHHHHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEEC
Confidence            688888888899999999999999999999999999999999986 5899999999999999999999999999999999


Q ss_pred             CChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHH-------HHHHHHH
Q 011590           84 SGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPK-------CVAQVLE  156 (482)
Q Consensus        84 ~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~-------~l~~A~~  156 (482)
                      +|||++|+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||++++++++++++       .+++||+
T Consensus        82 sGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~  161 (578)
T 3lq1_A           82 SGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVD  161 (578)
T ss_dssp             SSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998765       8999999


Q ss_pred             HhhcCCCceEEEEcCcchhccc-cChhHHH-HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcccccc
Q 011590          157 RAVSGRPGGCYLDLPTDVLHQT-ISVSEAE-KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA  234 (482)
Q Consensus       157 ~a~~~~~gPv~l~iP~dv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~  234 (482)
                      .|.++|||||||+||.|++..+ ++..... ..+...+ ...+...+.++++.+++++++|.+ |||+|++|+|+.+ ++
T Consensus       162 ~A~~gr~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~~  238 (578)
T 3lq1_A          162 IAMKTPRGPVHLNFPLREPLVPILEPSPFTATGKKHHH-VHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-EL  238 (578)
T ss_dssp             HHHSSSCCCEEEEEECCSCCCCCCSSCCC-------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-TC
T ss_pred             HhhCCCCCcEEEECccCCCCCCCcccchhcccCccccc-cccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-HH
Confidence            9999999999999999976543 2211110 0000000 000111234567889999999999 9999999999975 56


Q ss_pred             HHHHHHHHHHhCCcEeeCCC-CCCCCCCCCCcccchHH-------HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcE
Q 011590          235 EGELKKLVESTGIPFLPTPM-GKGLLPDTHPLAATAAR-------SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF  306 (482)
Q Consensus       235 ~~~l~~lae~~g~pv~~t~~-~~g~~~~~hp~~~G~~~-------~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~i  306 (482)
                      .+++.+|||++|+||++|++ +++.+|++||+++|.+.       ...+++||+||.+|+++..+....+... .++.++
T Consensus       239 ~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~-~~~~~~  317 (578)
T 3lq1_A          239 EQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQ-LSDIRF  317 (578)
T ss_dssp             HHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHHHHHHHH-CCSSEE
T ss_pred             HHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccchhHHHHHhc-CCCCEE
Confidence            79999999999999999965 68999999999998643       2347799999999998754332222111 256899


Q ss_pred             EEEeCCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHH-HHHHhhhcCCCCCCcccH
Q 011590          307 VLVDVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL-KMEVQLAKDVVPFNFMTP  384 (482)
Q Consensus       307 i~id~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  384 (482)
                      ||||.|+.+++... +++.+++|++.+|++|.+.+...    .....|.+.+.+.++++.. .+..  ..+..++++.++
T Consensus       318 i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~----~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  391 (578)
T 3lq1_A          318 YVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDD----AKDAAWLNGWTSYNKVAREIVLAE--MANTTILEEGKI  391 (578)
T ss_dssp             EEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSCST----TCCHHHHHHHHHHHHHHHHHHHHH--SCC----CTTHH
T ss_pred             EEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhccCC----CCcHHHHHHHHHHHHHHhHHHHHh--hhcCCCCCHHHH
Confidence            99999998886554 59999999999999999877542    1145687766555444332 2211  123457889999


Q ss_pred             HHHHHHHHhccCCCCcEEEeCchh-HHHHHHHhhh-cCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590          385 MRIIRDAILGVGSPAPILVSEGAN-TMDVGRAVLV-QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF  462 (482)
Q Consensus       385 ~~~l~~~l~~~~~~~~i~v~eg~~-~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf  462 (482)
                      ++.|++.+    |++++++.+.+. ..++.+ ++. ...+.+++.+.+++++|+++|+|+|+++  ++++||+|+|||||
T Consensus       392 ~~~l~~~l----~~~~iv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf  464 (578)
T 3lq1_A          392 VAELRRLL----PDKAGLFIGNSMPIRDVDT-YFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSF  464 (578)
T ss_dssp             HHHHHHHS----CSEEEEEECSSHHHHHHHH-HCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHH
T ss_pred             HHHHHHhC----CCCCeEEEeCccHHHHHHH-hhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHH
Confidence            99999998    999988877443 344434 343 3445577777666677779999999974  58999999999999


Q ss_pred             cCChHHHHHHHHcCcccccC
Q 011590          463 GFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       463 ~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|++|||+|++|+++|+++|
T Consensus       465 ~~~~~eL~ta~~~~l~~~iv  484 (578)
T 3lq1_A          465 YHDMNGLLMAKKYKMNLTIV  484 (578)
T ss_dssp             HHTGGGGHHHHHTTCCEEEE
T ss_pred             HhhHHHHHhhccCCCCeEEE
Confidence            99999999999999998764

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=100.00  E-value=1.2e-80  Score=667.32  Aligned_cols=454  Identities=14%  Similarity=0.082  Sum_probs=371.1

Q ss_pred             CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      ....++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||+
T Consensus        27 ~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~  106 (604)
T 2x7j_A           27 VNPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAA  106 (604)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHH
Confidence            3466789999999999999999999999999999999976 479999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc-------HHHHHHHHHHHhhcC
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE-------VPKCVAQVLERAVSG  161 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~-------~~~~l~~A~~~a~~~  161 (482)
                      +|+++||++|+.+++|||+|||++++...+++.+|++||..+|+++|||++++.++++       +++.+++||+.|.++
T Consensus       107 ~N~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~  186 (604)
T 2x7j_A          107 ANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKR  186 (604)
T ss_dssp             HTTHHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999999999999999999998       999999999999999


Q ss_pred             CCceEEEEcCcchhccccChhH-HH--HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHH
Q 011590          162 RPGGCYLDLPTDVLHQTISVSE-AE--KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL  238 (482)
Q Consensus       162 ~~gPv~l~iP~dv~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l  238 (482)
                      |||||||+||.|++..+..... ..  .... .  .......+.++++.+++++++|.+||||+|++|+++ ++++.+++
T Consensus       187 ~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a~~~l  262 (604)
T 2x7j_A          187 PMGPVHVNVPLREPLMPDLSDEPFGRMRTGR-H--VSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDADKENI  262 (604)
T ss_dssp             SCCEEEEEEECCSCCCCCTTSCTTCCSSSSC-S--SEEECCEEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHHHHHH
T ss_pred             CCCcEEEEcccCccCCCcccccccccccccc-c--ccccccCccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHHHHHH
Confidence            9999999999998654432111 00  0000 0  000111123455779999999999999999999998 56778999


Q ss_pred             HHHHHHhCCcEeeCCCCCCCC-CCCCCcccchHH--------HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEE
Q 011590          239 KKLVESTGIPFLPTPMGKGLL-PDTHPLAATAAR--------SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV  309 (482)
Q Consensus       239 ~~lae~~g~pv~~t~~~~g~~-~~~hp~~~G~~~--------~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~i  309 (482)
                      .+|||++|+||++|+++++.+ |++||+++|...        ++.++ +|+||.||+++.+.....+... .++.++|||
T Consensus       263 ~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~-~~~~~~i~i  340 (604)
T 2x7j_A          263 IALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKD-DPTIQQIVI  340 (604)
T ss_dssp             HHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHH-CTTSEEEEE
T ss_pred             HHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhh-CCCCeEEEE
Confidence            999999999999999987655 888999988532        23455 8999999999876533222111 125799999


Q ss_pred             eCCchhhcccC-CceeEeccHHHHHHHHHHhhh-cCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHH
Q 011590          310 DVCKEEIELRK-PHLGLVGDAKKVLEMINKEIK-DEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRI  387 (482)
Q Consensus       310 d~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (482)
                      |.|+.+++... +++.+++|++.+|++|.+.+. ..     ....|.+.+.+.++++.....  ...+..++++.++++.
T Consensus       341 d~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  413 (604)
T 2x7j_A          341 DEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAAT-----RSSEWLEKWQFVNGRFREHLQ--TISSEDVSFEGNLYRI  413 (604)
T ss_dssp             CTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSCSSC-----CCCHHHHHHHHHHHHHHHHHH--TSCCCCTTSHHHHHHH
T ss_pred             CCCCCccCCCccceEEEEcCHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHHHHHHHHH--hhcccCCCCHHHHHHH
Confidence            99999987654 599999999999999998774 21     234576654443333221111  1112356888899999


Q ss_pred             HHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCC-CCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCC
Q 011590          388 IRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTE-PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS  465 (482)
Q Consensus       388 l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~-~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~  465 (482)
                      |++.+    |++++++.| |....++.+ +++... +++++.+.++++||+++|+|+|+++| ++++||+++|||||+|+
T Consensus       414 L~~~l----p~d~iv~~d~g~~~~~~~~-~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~  487 (604)
T 2x7j_A          414 LQHLV----PENSSLFVGNSMPIRDVDT-FFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHD  487 (604)
T ss_dssp             HHHHS----CTTCEEEECTTHHHHHHHH-HCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHT
T ss_pred             HHHhC----CCCCEEEEECCHHHHHHHH-hcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhH
Confidence            99888    999999888 444555544 455544 78999998899999999999999999 68999999999999999


Q ss_pred             hHHHHHHHHcCcccccC
Q 011590          466 AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       466 ~~eL~T~~r~~l~i~~~  482 (482)
                      .|||+|++|+++|+++|
T Consensus       488 ~~eL~ta~~~~lp~~iv  504 (604)
T 2x7j_A          488 LNGLLAAKKLGIPLTVI  504 (604)
T ss_dssp             GGGGHHHHHHCCCEEEE
T ss_pred             HHHHHHhhhcCCCeEEE
Confidence            99999999999998764

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=100.00  E-value=1.5e-77  Score=639.37  Aligned_cols=444  Identities=16%  Similarity=0.217  Sum_probs=363.0

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      +++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus         2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~   80 (568)
T 2wvg_A            2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA   80 (568)
T ss_dssp             CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred             CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence            3789999999999999999999999999999999986 47999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCC--------CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDF--------QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~--------q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      ++||++|+.+++|||+|+|+++....+.+.+        |..||..+|+++|||++++.+++++++.+++|++.|.++| 
T Consensus        81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~-  159 (568)
T 2wvg_A           81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK-  159 (568)
T ss_dssp             HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence            9999999999999999999999988776532        2248999999999999999999999999999999999987 


Q ss_pred             ceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH
Q 011590          164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE  243 (482)
Q Consensus       164 gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae  243 (482)
                      |||||+||.|++..+++.........     ......+.++++.+++++++|.+||||+|++|.++.++++.+++.+|||
T Consensus       160 GPV~l~iP~dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae  234 (568)
T 2wvg_A          160 KPVYLEIACNIASMPCAAPGPASALF-----NDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFAD  234 (568)
T ss_dssp             CCEEEEEEGGGTTSEECEECCTHHHH-----CCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHH
T ss_pred             CCEEEEechhHhcCcccCCCcccccc-----cCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHH
Confidence            99999999999877654211111110     0001111123467999999999999999999999999999999999999


Q ss_pred             HhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh
Q 011590          244 STGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE  315 (482)
Q Consensus       244 ~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~  315 (482)
                      ++|+||++|+++||.||++||+++|.        ..++++++||+||+||+++.++.+.++. .+.++.++||||.|+.+
T Consensus       235 ~~~~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~  313 (568)
T 2wvg_A          235 ALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWT-DIPDPKKLVLAEPRSVV  313 (568)
T ss_dssp             HHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTT-CCCCTTTEEEECSSEEE
T ss_pred             HhCCCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccc-cCCCCCcEEEEeCChhh
Confidence            99999999999999999999999885        2456889999999999999877654443 33467899999999988


Q ss_pred             hcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHH-HhHHHHHHhhhcCCCCCCcccHHHHHHHHHhc
Q 011590          316 IELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTK-DNVLKMEVQLAKDVVPFNFMTPMRIIRDAILG  394 (482)
Q Consensus       316 ~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  394 (482)
                      ++..   .....+++.+|++|.+.++..      ...|.+ ..+.++ ++.   .........++++..+++.|++.+  
T Consensus       314 ~~~~---~~~~~~~~~~l~~L~~~l~~~------~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l--  378 (568)
T 2wvg_A          314 VNGI---RFPSVHLKDYLTRLAQKVSKK------TGALDF-FKSLNAGELK---KAAPADPSAPLVNAEIARQVEALL--  378 (568)
T ss_dssp             ETTE---EEESCCHHHHHHHHHHHCCCC------CHHHHH-HHHTTCCSCC---CCCCCCTTSBCCHHHHHHHHHTTC--
T ss_pred             cCCe---ecCCCCHHHHHHHHHHhcccc------ccchhh-hhhhhhhccc---ccccCCCCCccCHHHHHHHHHHhC--
Confidence            7642   233446899999998876431      234632 111110 000   000011234578888888887777  


Q ss_pred             cCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHH
Q 011590          395 VGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLS  474 (482)
Q Consensus       395 ~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r  474 (482)
                        |++++++.|.++..+.. .++....+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++|
T Consensus       379 --~~~~iv~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~  455 (568)
T 2wvg_A          379 --TPNTTVIAETGDSWFNA-QRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVR  455 (568)
T ss_dssp             --CTTEEEEECSSHHHHHH-HTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH
T ss_pred             --CCCCEEEEcCcHHHHHH-hhcccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHH
Confidence              99999999955555543 445666788999998999999999999999999999999999999999999999999999


Q ss_pred             cCcccccC
Q 011590          475 CIIMISSI  482 (482)
Q Consensus       475 ~~l~i~~~  482 (482)
                      +++|+++|
T Consensus       456 ~~l~~~iv  463 (568)
T 2wvg_A          456 LKLPVIIF  463 (568)
T ss_dssp             TTCCCEEE
T ss_pred             cCCCcEEE
Confidence            99998654

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=100.00  E-value=4.2e-78  Score=641.44  Aligned_cols=445  Identities=13%  Similarity=0.109  Sum_probs=343.6

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      ..++++|+|++.|+++||+||||+||+.+++|++++.+ .++++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus         6 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N   85 (556)
T 3hww_A            6 FNRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVAN   85 (556)
T ss_dssp             HHHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHT
T ss_pred             hhhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHh
Confidence            45789999999999999999999999999999999975 57999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc------HHHHHHHHHHHhhcCCCc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPG  164 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~------~~~~l~~A~~~a~~~~~g  164 (482)
                      +++||++||.+++|||+|||++++...+++.+|++||..+|+++|||++++.++++      +.+.+++|+   .++|||
T Consensus        86 ~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~---~~~r~G  162 (556)
T 3hww_A           86 LYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHAL---GTLHAG  162 (556)
T ss_dssp             THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHH---HSCCSS
T ss_pred             hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHH---hcCCCC
Confidence            99999999999999999999999999999999999999999999999999999875      777777777   358899


Q ss_pred             eEEEEcCcchhcc-ccChhHHHHHHHhhhh-hcccccCCCCCHHHH-HHHHHHHHhCCCCEEEEcCCccccccHHHHHHH
Q 011590          165 GCYLDLPTDVLHQ-TISVSEAEKLLKEAES-AKETVTQGGIVNSDI-DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKL  241 (482)
Q Consensus       165 Pv~l~iP~dv~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~l  241 (482)
                      ||||+||.|+... +++........+.... ....+....+..+.+ ++++++|.+||||+|++|.+  ++++.+++.+|
T Consensus       163 PV~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~a~~~l~~l  240 (556)
T 3hww_A          163 GVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRM--SAEEGKKVALW  240 (556)
T ss_dssp             CEEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSSCCCCCCCCCCCTTHHHHTTSCEEEEECBC--CHHHHHHHHHH
T ss_pred             CEEEeCCcCCCCCCCccccccccccccccccccccccccccccccchhhhhhhhccCCCeEEEECCC--ChHHHHHHHHH
Confidence            9999999985433 3332110000000000 000011111111222 34567788999999999974  46788999999


Q ss_pred             HHHhCCcEeeCCC-CCCCCCCCCCcccch-HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590          242 VESTGIPFLPTPM-GKGLLPDTHPLAATA-ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR  319 (482)
Q Consensus       242 ae~~g~pv~~t~~-~~g~~~~~hp~~~G~-~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~  319 (482)
                      ||++|+||++|++ ++|.++++||+++|. ..++++++||+||+||+++++..+.++...+++ .++||||.|+.+++..
T Consensus       241 ae~~~~PV~~t~~~~~~~~~~~~~~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~  319 (556)
T 3hww_A          241 AQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEP-EEYWIVDDIEGRLDPA  319 (556)
T ss_dssp             HHHHTCCEEECTTTCSCCSSCCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCC-SEEEEEESSCSCCCTT
T ss_pred             HHhcCCEEEEccCCCCCCCcCcHHHHhcCchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCC-CeEEEECCCCccCCCC
Confidence            9999999999975 889999999999984 567889999999999999976544443333443 4999999999999765


Q ss_pred             C-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590          320 K-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP  398 (482)
Q Consensus       320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  398 (482)
                      . +++.+++|++.+|++|.+..         ...|.+.+.+.++++....    .....++++.++++.|++.+    |+
T Consensus       320 ~~~~~~i~~d~~~~l~~l~~~~---------~~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l----~~  382 (556)
T 3hww_A          320 HHRGRRLIANIADWLELHPAEK---------RQPWCVEIPRLAEQAMQAV----IARRDAFGEAQLAHRICDYL----PE  382 (556)
T ss_dssp             CCSEEEEESCHHHHHHHSCCCC---------CCCCCSSHHHHHHHHHHHH----HTTCCSSSHHHHHHTGGGTC----CT
T ss_pred             CCceEEEEcCHHHHHHhccccc---------chHHHHHHHHHHHHHHHHH----hhcccCcCHHHHHHHHHHhC----CC
Confidence            4 59999999999999864321         1124333333333322211    12345788888888888777    99


Q ss_pred             CcEEEeCchhHH-HHHHHhhhcCCCCeeecC-CCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590          399 APILVSEGANTM-DVGRAVLVQTEPRCRLDA-GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI  476 (482)
Q Consensus       399 ~~i~v~eg~~~~-~~~~~~~~~~~~~~~~~~-~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~  476 (482)
                      +++++.+.+... ++ ..+........++.+ +++|.||+ +|+|+|+++| |+++||+++|||||+|++|||+|++|++
T Consensus       383 ~~iv~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~~~  459 (556)
T 3hww_A          383 QGQLFVGNSLVVRLI-DALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVS  459 (556)
T ss_dssp             TCEEEECSSHHHHHH-HHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTTCS
T ss_pred             CCeEEEeCCcHHHHH-HHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcccC
Confidence            998886522211 11 111111222345554 45677788 9999999999 7999999999999999999999999999


Q ss_pred             cccccC
Q 011590          477 IMISSI  482 (482)
Q Consensus       477 l~i~~~  482 (482)
                      +|+++|
T Consensus       460 lpv~iv  465 (556)
T 3hww_A          460 APLVLI  465 (556)
T ss_dssp             SCEEEE
T ss_pred             CCcEEE
Confidence            998764

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=100.00  E-value=3.9e-77  Score=635.94  Aligned_cols=441  Identities=18%  Similarity=0.233  Sum_probs=362.3

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      +++++++|++.|+++||++|||+||+.+++|++++.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus         2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~   80 (566)
T 2vbi_A            2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA   80 (566)
T ss_dssp             CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred             ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence            37999999999999999999999999999999999864 7999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCC--C-----C-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDF--Q-----E-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~--q-----~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      ++||++|+.+++|||+|+|+++....+.+.+  |     + .||..+|++++||+.++++++++++.+++|++.|.++| 
T Consensus        81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~-  159 (566)
T 2vbi_A           81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER-  159 (566)
T ss_dssp             HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence            9999999999999999999999988876542  2     3 38999999999999999999999999999999999987 


Q ss_pred             ceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH
Q 011590          164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE  243 (482)
Q Consensus       164 gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae  243 (482)
                      |||||+||.|++..+++.........     ......+.++++.+++++++|.+||||+|++|.++.++++.+++.+|||
T Consensus       160 GPV~l~iP~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae  234 (566)
T 2vbi_A          160 KPAYLDIACNIASEPCVRPGPVSSLL-----SEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLAD  234 (566)
T ss_dssp             CCEEEEEETTTTTSBCCEECCCSCSC-----CCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHH
T ss_pred             CCEEEEechhhcCCeecCCCCCcccC-----CCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHH
Confidence            99999999999877654211000000     0000011123467999999999999999999999999999999999999


Q ss_pred             HhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh
Q 011590          244 STGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE  315 (482)
Q Consensus       244 ~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~  315 (482)
                      ++|+||++|+++||.+|++||+++|.        ..++++++||+||+||+++.++.+.++. .+.+++++||||.|+.+
T Consensus       235 ~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~  313 (566)
T 2vbi_A          235 KLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWS-AWPKGPNVILAEPDRVT  313 (566)
T ss_dssp             HHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTT-SCCCSTTEEEECSSEEE
T ss_pred             HhCCCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCcccccccccc-ccCCCCcEEEEeCChhe
Confidence            99999999999999999999999885        2456789999999999999887655443 33467899999999988


Q ss_pred             hcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhcc
Q 011590          316 IELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGV  395 (482)
Q Consensus       316 ~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  395 (482)
                      ++..   .....+++.+|++|.+.+...      ...|.+ ..+.+++.    .  ......++++..+++.|++.+   
T Consensus       314 ~~~~---~~~~~~~~~~l~~L~~~l~~~------~~~~~~-~~~~~~~~----~--~~~~~~~l~~~~~~~~l~~~l---  374 (566)
T 2vbi_A          314 VDGR---AYDGFTLRAFLQALAEKAPAR------PASAQK-SSVPTCSL----T--ATSDEAGLTNDEIVRHINALL---  374 (566)
T ss_dssp             ETTE---EEESSCHHHHHHHHHHHCCCC------CHHHHT-SCCCCCCC----C--CCCTTSCCCHHHHHHHHHHHC---
T ss_pred             eCCc---ccCCccHHHHHHHHHHhcccc------ccchhh-hhhhhhcc----C--CCCCCCccCHHHHHHHHHHhc---
Confidence            7642   223345789999998876432      233421 10000000    0  001234688888999998888   


Q ss_pred             CCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHc
Q 011590          396 GSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSC  475 (482)
Q Consensus       396 ~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~  475 (482)
                       |++++++.|.++..+.. .+++...+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++++
T Consensus       375 -~~~~iv~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~  452 (566)
T 2vbi_A          375 -TSNTTLVAETGDSWFNA-MRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRY  452 (566)
T ss_dssp             -CTTEEEEECSSHHHHHH-HTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHT
T ss_pred             -CCCCEEEECCchHHHhh-hheECCCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHh
Confidence             99999999855544543 3456666788999889999999999999999999999999999999999999999999999


Q ss_pred             CcccccC
Q 011590          476 IIMISSI  482 (482)
Q Consensus       476 ~l~i~~~  482 (482)
                      ++|+++|
T Consensus       453 ~l~~~iv  459 (566)
T 2vbi_A          453 ELPVIIF  459 (566)
T ss_dssp             TCCCEEE
T ss_pred             CCCcEEE
Confidence            9998754

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=100.00  E-value=8.1e-78  Score=641.11  Aligned_cols=443  Identities=19%  Similarity=0.237  Sum_probs=358.6

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .+++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus         2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N   80 (563)
T 2vk8_A            2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELS   80 (563)
T ss_dssp             CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred             CccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHH
Confidence            35799999999999999999999999999999999986 47999999999999999999999999 99999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccC----------CCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDF----------GRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS  160 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~----------~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~  160 (482)
                      +++||++|+.+++|||+|+|++++...          +.+.+|  ||..+|++++||+.++++++++++.+++|++.|.+
T Consensus        81 ~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~  158 (563)
T 2vk8_A           81 ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYV  158 (563)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998753          456677  68999999999999999999999999999999998


Q ss_pred             CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590          161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK  240 (482)
Q Consensus       161 ~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~  240 (482)
                      +| |||||+||.|++..+++.........    ...+...+.++++.+++++++|.+||||+|++|+++.++++.+++.+
T Consensus       159 ~~-GPV~l~iP~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~  233 (563)
T 2vk8_A          159 TQ-RPVYLGLPANLVDLNVPAKLLQTPID----MSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKK  233 (563)
T ss_dssp             HT-SCEEEEEETTGGGSEEEGGGGGSCCC----CSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHH
T ss_pred             CC-CCEEEEechhhhcCccCCccCcCccc----ccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHH
Confidence            76 99999999999876654321000000    00000011122357899999999999999999999988899999999


Q ss_pred             HHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590          241 LVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC  312 (482)
Q Consensus       241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d  312 (482)
                      |||++|+||++|+++||.||++||+++|.        ..++++++||+||+||+++++..+.++. .+.++.++||||.|
T Consensus       234 lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d  312 (563)
T 2vk8_A          234 LIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFS-YSYKTKNIVEFHSD  312 (563)
T ss_dssp             HHHHHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTC-CCCCCSCEEEECSS
T ss_pred             HHHHhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccc-cCCCCCeEEEEeCC
Confidence            99999999999999999999999999874        2467899999999999999887655443 33457899999999


Q ss_pred             chhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 011590          313 KEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAI  392 (482)
Q Consensus       313 ~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  392 (482)
                      +.+++...   ....+++.+|++|.+.+....      ..|.+ +.+.++++.    ........++++.++++.|++.+
T Consensus       313 ~~~~~~~~---~~~~~~~~~l~~L~~~l~~~~------~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l  378 (563)
T 2vk8_A          313 HMKIRNAT---FPGVQMKFVLQKLLTTIADAA------KGYKP-VAVPARTPA----NAAVPASTPLKQEWMWNQLGNFL  378 (563)
T ss_dssp             EEEETTEE---EETCCHHHHHHHHHHHHHHHT------TTCCC-CCCCCCCCC----CCCCCTTCBCCHHHHHHHHTTTC
T ss_pred             ceEECCcc---cCCcCHHHHHHHHHHhhcccc------chhhh-hhhhhhccc----ccCCCCCCCcCHHHHHHHHHHhC
Confidence            98876542   223356899999988764321      01210 000000000    00011234578877888887776


Q ss_pred             hccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCC----CcEEEEEcchhccCChHH
Q 011590          393 LGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE----RLVVAVEGDSGFGFSAVE  468 (482)
Q Consensus       393 ~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~----~~vi~~~GDGsf~~~~~e  468 (482)
                          |++++++.|.+++.+.. .+++...+++++.++++|+||+++|+|+|+++|.|+    ++||+++|||+|+|+.||
T Consensus       379 ----~~~~iv~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~e  453 (563)
T 2vk8_A          379 ----QEGDVVIAETGTSAFGI-NQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQE  453 (563)
T ss_dssp             ----CTTCEEEECTTHHHHHG-GGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGG
T ss_pred             ----CCCCEEEECCchHHHHH-hhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHH
Confidence                99999999955555543 345666788999999999999999999999999887    999999999999999999


Q ss_pred             HHHHHHcCcccccC
Q 011590          469 VEVWLSCIIMISSI  482 (482)
Q Consensus       469 L~T~~r~~l~i~~~  482 (482)
                      |+|++++++|+++|
T Consensus       454 l~ta~~~~l~~~iv  467 (563)
T 2vk8_A          454 ISTMIRWGLKPYLF  467 (563)
T ss_dssp             HHHHHHTTCCCEEE
T ss_pred             HHHHHHcCCCcEEE
Confidence            99999999998764

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=100.00  E-value=1.8e-77  Score=637.80  Aligned_cols=437  Identities=17%  Similarity=0.209  Sum_probs=354.5

Q ss_pred             ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590           11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV   89 (482)
Q Consensus        11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~   89 (482)
                      +.+++++++|++.|+++||++|||+||+.+++|++++.+. .+++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus        18 ~~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~   97 (565)
T 2nxw_A           18 GSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAF   97 (565)
T ss_dssp             SCCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHH
T ss_pred             CCCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHH
Confidence            3468999999999999999999999999999999999754 468899999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCC-----CCcC-HhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF-----QELD-QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~-----q~~d-~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      |+++||++|+.+++|||+|+|+++....+.+.+     |++| |..+|++++||++++++++++++.+++||+.|.++ +
T Consensus        98 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~  176 (565)
T 2nxw_A           98 NMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ-S  176 (565)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-C
Confidence            999999999999999999999999998887764     6788 99999999999999999999999999999999986 5


Q ss_pred             ceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH
Q 011590          164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE  243 (482)
Q Consensus       164 gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae  243 (482)
                      |||||+||.|++.++++....  .+       .....+.+.++.+++++++|.++|||+|++|.++.++++.+++.+|||
T Consensus       177 GPV~l~iP~Dv~~~~~~~~~~--~~-------~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae  247 (565)
T 2nxw_A          177 RPVYLEIPRNMVNAEVEPVGD--DP-------AWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQ  247 (565)
T ss_dssp             CCEEEEEEGGGTTCBCCCCCC--CC-------CCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHH
T ss_pred             CCEEEECChhhhcCcCCCccc--cC-------CCCCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHH
Confidence            999999999999876542110  00       000111122457899999999999999999999988899999999999


Q ss_pred             HhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh
Q 011590          244 STGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE  315 (482)
Q Consensus       244 ~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~  315 (482)
                      ++|+||++|+++||.+|++||+++|.        ..++++++||+||+||+++.+..+..+...+ +..++|+||.|+.+
T Consensus       248 ~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~i~i~~d~~~  326 (565)
T 2nxw_A          248 RLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKI-DLRKTIHAFDRAVT  326 (565)
T ss_dssp             HHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTS-CGGGEEEEETTEEE
T ss_pred             HhCCCEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccC-CCCcEEEEeCCcee
Confidence            99999999999999999999999885        2457889999999999999876543333223 34689999999988


Q ss_pred             hcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhcc
Q 011590          316 IELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGV  395 (482)
Q Consensus       316 ~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  395 (482)
                      ++...   .....+..++++|.+.+...      ...|.+. .+  ++..    .....+..++++..+++.|++.+   
T Consensus       327 ~~~~~---~~~~~~~~~l~~L~~~l~~~------~~~w~~~-~~--~~~~----~~~~~~~~~l~~~~v~~~l~~~l---  387 (565)
T 2nxw_A          327 LGYHT---YADIPLAGLVDALLERLPPS------DRTTRGK-EP--HAYP----TGLQADGEPIAPMDIARAVNDRV---  387 (565)
T ss_dssp             ETTEE---EESCCHHHHHHHHHHTSCCC------CCCCCCS-CS--SCCC----CCCCCSSSBCCHHHHHHHHHHHH---
T ss_pred             eCCcc---cCCccHHHHHHHHHHhcccc------chhhhhh-hh--hhcc----ccccCCCCccCHHHHHHHHHHhc---
Confidence            76432   22234467888888766432      1123211 00  0000    00011234688899999999999   


Q ss_pred             CCC--CcEE-EeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590          396 GSP--APIL-VSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW  472 (482)
Q Consensus       396 ~~~--~~i~-v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~  472 (482)
                       |+  ++++ +.|.+++.|+... +   .+++++.++++|+||+++|+|+|+|+|.|+++|++++|||+|+|+.+||+|+
T Consensus       388 -~~~~~~iv~~~d~G~~~~~~~~-~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta  462 (565)
T 2nxw_A          388 -RAGQEPLLIAADMGDCLFTAMD-M---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNC  462 (565)
T ss_dssp             -HTTCCCCEEEECSSHHHHHHTT-S---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGH
T ss_pred             -ccccCCEEEEecchHHHHHHHh-C---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHH
Confidence             88  8887 8885555555433 2   6788999988999999999999999999999999999999999999999999


Q ss_pred             HHcCcccccC
Q 011590          473 LSCIIMISSI  482 (482)
Q Consensus       473 ~r~~l~i~~~  482 (482)
                      +|+++|+++|
T Consensus       463 ~~~~l~~~iv  472 (565)
T 2nxw_A          463 RRLGIDPIVI  472 (565)
T ss_dssp             HHHTCCCEEE
T ss_pred             HHhCCCCEEE
Confidence            9999998754

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=100.00  E-value=2.9e-76  Score=627.96  Aligned_cols=437  Identities=19%  Similarity=0.211  Sum_probs=358.0

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      ..++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus         3 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N   81 (552)
T 1ovm_A            3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELS   81 (552)
T ss_dssp             CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred             CccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHH
Confidence            45899999999999999999999999999999999986 47999999999999999999999999 99999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccC----------CCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDF----------GRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS  160 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~----------~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~  160 (482)
                      +++||++|+.+++|||+|+|+++....          +.+.+|  ||..++++++||++++.+ +++++.+++|++.|.+
T Consensus        82 ~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~  158 (552)
T 1ovm_A           82 AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLR  158 (552)
T ss_dssp             THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHh
Confidence            999999999999999999999987653          445677  589999999999999999 9999999999999998


Q ss_pred             CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590          161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK  240 (482)
Q Consensus       161 ~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~  240 (482)
                      +| |||||+||.|++.++++.... ....     ..+...+.++++.+++++++|.++|||+|++|+|+.++++.+++.+
T Consensus       159 ~~-GPV~l~iP~d~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~  231 (552)
T 1ovm_A          159 ER-RPGYLMLPADVAKKAATPPVN-ALTH-----KQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQK  231 (552)
T ss_dssp             HT-CCEEEEEEHHHHHSBCCCCSS-CCCC-----CCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHH
T ss_pred             CC-CCEEEEeehhhccCccCCCcc-cccc-----cCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHH
Confidence            76 999999999998766542210 0000     0000011123457999999999999999999999998999999999


Q ss_pred             HHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590          241 LVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC  312 (482)
Q Consensus       241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d  312 (482)
                      |||++|+||++|++|||.+|++||+++|.        ..++++++||+||+||+++++..+.++. .+.++.++||||.|
T Consensus       232 lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d  310 (552)
T 1ovm_A          232 WVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFT-HQLTPAQTIEVQPH  310 (552)
T ss_dssp             HHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTC-CCCCTTTEEEECSS
T ss_pred             HHHHHCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccc-cCCCCCeEEEEeCC
Confidence            99999999999999999999999999985        2457889999999999999887655443 34457899999999


Q ss_pred             chhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 011590          313 KEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAI  392 (482)
Q Consensus       313 ~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  392 (482)
                      +.+++....   ...+++.+|++|.+ +....      ..|.+..   +++...    .......++++..+++.|++.+
T Consensus       311 ~~~~~~~~~---~~~~~~~~l~~L~~-l~~~~------~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~l~~~l  373 (552)
T 1ovm_A          311 AARVGDVWF---TGIPMNQAIETLVE-LCKQH------VHAGLMS---SSSGAI----PFPQPDGSLTQENFWRTLQTFI  373 (552)
T ss_dssp             EEEETTEEE---ESCCHHHHHHHHHH-HHHTS------CCC---------------------CCSBCCHHHHHHHHHHHC
T ss_pred             hheeCCccc---CCccHHHHHHHHHh-Ccccc------cchhhhh---hhcccc----ccCCCCCccCHHHHHHHHHHhc
Confidence            988764321   23456899999988 65421      1243211   111110    0111335688899999999888


Q ss_pred             hccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590          393 LGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW  472 (482)
Q Consensus       393 ~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~  472 (482)
                          +++++++.|.++..+..+ +++...+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|+
T Consensus       374 ----~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta  448 (552)
T 1ovm_A          374 ----RPGDIILADQGTSAFGAI-DLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSM  448 (552)
T ss_dssp             ----CTTCEEEECTTHHHHHHT-TCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHH
T ss_pred             ----CCCCEEEECCchHHHHHH-hcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHH
Confidence                999999998555445434 456667888999999999999999999999999999999999999999999999999


Q ss_pred             HHcCcccccC
Q 011590          473 LSCIIMISSI  482 (482)
Q Consensus       473 ~r~~l~i~~~  482 (482)
                      +++++|+++|
T Consensus       449 ~~~~l~~~iv  458 (552)
T 1ovm_A          449 LRDKQHPIIL  458 (552)
T ss_dssp             HHTTCCCEEE
T ss_pred             HHhCCCCEEE
Confidence            9999998764

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=100.00  E-value=2.9e-74  Score=614.39  Aligned_cols=436  Identities=17%  Similarity=0.208  Sum_probs=356.3

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      ..++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus        23 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N  101 (570)
T 2vbf_A           23 SMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELS  101 (570)
T ss_dssp             -CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred             CcCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHH
Confidence            35799999999999999999999999999999999986 47999999999999999999999999 99999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CC-----Cc-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQ-----EL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR  162 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q-----~~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~  162 (482)
                      +++||++|+.+++|||+|+|+++....+++.  +|     ++ ||..++++++||++++.+ +++++.+++|++.|.++|
T Consensus       102 ~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~  180 (570)
T 2vbf_A          102 AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER  180 (570)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999987654432  22     23 488999999999999999 999999999999999886


Q ss_pred             CceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHH
Q 011590          163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV  242 (482)
Q Consensus       163 ~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~la  242 (482)
                       |||||+||.|++..+++.... ....     ..+...+.+ ++.+++++++|.++|||+|++|+|+.++++.+++.+||
T Consensus       181 -GPV~l~iP~d~~~~~~~~~~~-~~~~-----~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~la  252 (570)
T 2vbf_A          181 -KPVYINLPVDVAAAKAEKPAL-SLEK-----ESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFV  252 (570)
T ss_dssp             -CCEEEEEEHHHHTSBCCCCSS-CCC-----------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHH
T ss_pred             -CCEEEEcchhhhcCcccCCcc-cccc-----cCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHH
Confidence             999999999998776543210 0000     000011112 56799999999999999999999999899999999999


Q ss_pred             HHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCch
Q 011590          243 ESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE  314 (482)
Q Consensus       243 e~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~  314 (482)
                      |++|+||++|+++||.+|++||+++|.        ..++++++||+||+||+++.+..+..+. .+.++.++||||.|+.
T Consensus       253 e~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~  331 (570)
T 2vbf_A          253 SETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFT-HHLDENKMISLNIDEG  331 (570)
T ss_dssp             HHHCCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTC-CCCCGGGEEEECSSCE
T ss_pred             HHHCCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccc-cCCCCCeEEEEeCCHH
Confidence            999999999999999999999999874        2457889999999999999877654433 2345689999999998


Q ss_pred             hhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhc
Q 011590          315 EIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILG  394 (482)
Q Consensus       315 ~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  394 (482)
                      +++...   ....|++.+|++|.+.+...     .   |.  .... ++..     .......++++..+++.|++.+  
T Consensus       332 ~~~~~~---~~~~~~~~~l~~L~~~l~~~-----~---~~--~~~~-~~~~-----~~~~~~~~~~~~~~~~~l~~~l--  390 (570)
T 2vbf_A          332 IIFNKV---VEDFDFRAVVSSLSELKGIE-----Y---EG--QYID-KQYE-----EFIPSSAPLSQDRLWQAVESLT--  390 (570)
T ss_dssp             EETTEE---ECSSCHHHHHHTGGGCCSCC-----C---CS--CCCC-CCCC-----CCCCCSSBCCHHHHHHHHHHHC--
T ss_pred             HhCCee---ecCCCHHHHHHHHHHhcccc-----c---cc--cchh-hhcc-----ccCCCCCCcCHHHHHHHHHHhc--
Confidence            776432   23347899999888766431     1   21  0000 0000     0011234678888999998888  


Q ss_pred             cCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHH
Q 011590          395 VGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLS  474 (482)
Q Consensus       395 ~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r  474 (482)
                        |++++++.|.+++.+.. .+++...+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++|
T Consensus       391 --~~~~iv~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~  467 (570)
T 2vbf_A          391 --QSNETIVAEQGTSFFGA-STIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIR  467 (570)
T ss_dssp             --CSSEEEEECTTHHHHHH-TTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH
T ss_pred             --CCCCEEEEeCCHHHHHH-HhcccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHH
Confidence              99999999955544443 345666788999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccC
Q 011590          475 CIIMISSI  482 (482)
Q Consensus       475 ~~l~i~~~  482 (482)
                      +++|+++|
T Consensus       468 ~~l~~~iv  475 (570)
T 2vbf_A          468 EKLNPICF  475 (570)
T ss_dssp             TTCCCEEE
T ss_pred             cCCCCEEE
Confidence            99998764

>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}

Probab=99.73  E-value=6.2e-19  Score=157.38  Aligned_cols=129  Identities=16%  Similarity=0.191  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCC--cc--cchHH-------H--
Q 011590          206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP--LA--ATAAR-------S--  272 (482)
Q Consensus       206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp--~~--~G~~~-------~--  272 (482)
                      ..+++++++|++||||+|++|+|+.++++.+++.+|||++|+||++|.++||+||++||  +|  +|..+       +  
T Consensus        22 ~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~  101 (170)
T 3cf4_G           22 VSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPG  101 (170)
T ss_dssp             CCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhH
Confidence            45899999999999999999999998999999999999999999999999999999999  99  88643       3  


Q ss_pred             -HhhhcCCEEEEecCcc--CcccccCCCCCCCCCCcEEEEeCCchh-hcccCCceeEeccHHHHHHHHHHhh
Q 011590          273 -LAIGQCDVALVVGARL--NWLLHFGEPPKWSKDVKFVLVDVCKEE-IELRKPHLGLVGDAKKVLEMINKEI  340 (482)
Q Consensus       273 -~~l~~aDlvl~iG~~~--~~~~~~g~~~~~~~~~~ii~id~d~~~-~~~~~~~~~i~~D~~~~l~~L~~~l  340 (482)
                       +.+++||+||++|+++  +++.+.++ ..|.+ .++|+++.+... .....+.+    ..+.+|+.|.+.+
T Consensus       102 ~~~~~~aDlvl~iG~~~~~~~~~t~~~-~~~~~-~~iI~i~~~~~~~~~~~~~~l----~~~~~l~~L~~~~  167 (170)
T 3cf4_G          102 LDGNGNYDMIITIGFKKFYINQVLSAA-KNFSN-LKTIAIERGYIQNATMSFGNL----SKADHYAALDELI  167 (170)
T ss_dssp             SSSSCCCSEEEEESCCHHHHHHHHHHH-HHHCC-CCEEECSSSCCTTSSEECCCC----CHHHHHHHHHHHH
T ss_pred             HHHhhcCCEEEEECCccCccccccccc-cccCC-CeEEEECCCcccchhhhhccC----CHHHHHHHHHHHH
Confidence             6688999999999999  76654322 22344 788866553211 11111222    3567777776654

>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6

Probab=99.66  E-value=2.7e-18  Score=152.31  Aligned_cols=101  Identities=20%  Similarity=0.299  Sum_probs=84.0

Q ss_pred             HHHH-HHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCC-CC-C--cccc--hHHHHhh-----
Q 011590          208 IDKA-VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD-TH-P--LAAT--AARSLAI-----  275 (482)
Q Consensus       208 ~~~~-~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~-~h-p--~~~G--~~~~~~l-----  275 (482)
                      ++++ +++|++||||+|++|+ +..+++.++|++|+|+ |+||++|.+|+|.||+ +| |  +++|  ..++...     
T Consensus        24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~~~~g~~~~~~~~~  101 (174)
T 1ytl_A           24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWK  101 (174)
T ss_dssp             CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccccHHHHHHhhhhhhh
Confidence            6788 9999999999999999 9888999999999999 9999999999999999 99 8  5666  4455544     


Q ss_pred             -----hcCCEEEEecCccCcccc-cCCCCCCCCCCcEEEEe
Q 011590          276 -----GQCDVALVVGARLNWLLH-FGEPPKWSKDVKFVLVD  310 (482)
Q Consensus       276 -----~~aDlvl~iG~~~~~~~~-~g~~~~~~~~~~ii~id  310 (482)
                           ++|||||+||+|+++... .+.+..|.+++++||||
T Consensus       102 ~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id  142 (174)
T 1ytl_A          102 GFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID  142 (174)
T ss_dssp             CTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             hhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence                 899999999999973221 22333455688999986

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}

Probab=99.63  E-value=3.8e-16  Score=157.81  Aligned_cols=162  Identities=17%  Similarity=0.179  Sum_probs=125.4

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      .++|.+++++.+.+.|++++||+||++..++++.+.+    .+++++.+.||.+|+.||.|+++.++|  ++..|+|||+
T Consensus        22 ~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~G~   99 (395)
T 1yd7_A           22 FIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGPGF   99 (395)
T ss_dssp             EEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETTHH
T ss_pred             EeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCchHH
Confidence            5799999999999999999999999999988888753    579999999999999999999999998  5557999999


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCc-CHhhh--hc--cccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL-DQVEA--VK--PFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~-d~~~~--~~--~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      .+++.+|.++...++|+++++++++....+...+++. |...+  ..  ++.++...+.+++++.+++..||+.|...+ 
T Consensus       100 ~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~-  178 (395)
T 1yd7_A          100 SLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYR-  178 (395)
T ss_dssp             HHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence            9999999999999999999999987666554444444 22222  22  567889999999999999999999999876 


Q ss_pred             ceEEEEcCcchhcc
Q 011590          164 GGCYLDLPTDVLHQ  177 (482)
Q Consensus       164 gPv~l~iP~dv~~~  177 (482)
                      .||.+.+|.++-..
T Consensus       179 ~PVi~~~~~~l~h~  192 (395)
T 1yd7_A          179 TPVILLTDAEVGHM  192 (395)
T ss_dssp             SEEEEEECHHHHHC
T ss_pred             CCEEEEcchhHhCe
Confidence            99999999997443

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=98.94  E-value=6.2e-10  Score=126.33  Aligned_cols=154  Identities=12%  Similarity=0.005  Sum_probs=110.5

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHH---h---CC-----CcEEecCchHHHHHHHHHHHhHhCCcEEE
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV---Q---LG-----VRFIAFHNEQSAGYAASAYGYLTGKPGIL   80 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~---~---~~-----i~~v~~~~E~~A~~~A~g~ar~tgk~~v~   80 (482)
                      ..++|.++++... ..|++.+++.|+++..++.+.+.   .   .+     ..++...+|.+|..||.|.+.+..|+.  
T Consensus         5 ~~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~--   81 (1231)
T 2c42_A            5 MTTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTT--   81 (1231)
T ss_dssp             EEEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEE--
T ss_pred             EEccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHh--
Confidence            4578999999986 88999999999999899888774   1   12     388899999999999999998866643  


Q ss_pred             EEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhh
Q 011590           81 LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAV  159 (482)
Q Consensus        81 ~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~  159 (482)
                      ..|++||+.-+...|..+...++|+|+...+++....+...+.+.++. ++.-.+.|.. ...++.++.+++..|++.|.
T Consensus        82 t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd~-~~ar~~G~~vl~pss~QEa~dl~~~Af~lAe  160 (1231)
T 2c42_A           82 TFTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQDI-YAARQTGFAMLASSSVQEAHDMALVAHLAAI  160 (1231)
T ss_dssp             EEECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCCSHHH-HTTTTSSCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCchhhH-HHHhcCCcEEEECCCHHHHHHHHHHHHHHHH
Confidence            448999999999999876667899999999886543322212221122 2222233333 34567777778888888777


Q ss_pred             cCCCceEEEEc
Q 011590          160 SGRPGGCYLDL  170 (482)
Q Consensus       160 ~~~~gPv~l~i  170 (482)
                      ..+ -||.+..
T Consensus       161 k~~-~PVi~~~  170 (1231)
T 2c42_A          161 ESN-VPFMHFF  170 (1231)
T ss_dssp             HHC-CCEEEEE
T ss_pred             HcC-CCEEEEe
Confidence            544 4555443

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=98.60  E-value=4.4e-08  Score=104.72  Aligned_cols=55  Identities=20%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             CCCCCcccchHHHHHHHhhh----CCCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590          428 AGTWGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       428 ~~~~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~  482 (482)
                      ..+.|+||+++|+|+|+|+|    .++++|++++|||+|+  |+.++|.|+.++++|+++|
T Consensus       119 ~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~I  179 (629)
T 2o1x_A          119 AITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIV  179 (629)
T ss_dssp             CSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE
T ss_pred             CcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE
Confidence            34679999999999999999    4899999999999999  7789999999999998754

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=98.44  E-value=8.6e-08  Score=96.44  Aligned_cols=53  Identities=13%  Similarity=0.081  Sum_probs=49.0

Q ss_pred             CCCcccchHHHHHHHhhhCC----CCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      ..|+||+++|.|+|+++|.+    ++.|++++|||+|+|..  ++|.++.++++|++.|
T Consensus       160 ~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v  218 (400)
T 2bfd_A          160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFF  218 (400)
T ss_dssp             CCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEE
Confidence            45999999999999999976    89999999999999988  9999999999998754

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=98.34  E-value=2e-07  Score=92.66  Aligned_cols=54  Identities=9%  Similarity=0.001  Sum_probs=47.4

Q ss_pred             CCCCcccchHHHHHHHhhhCC----CCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590          429 GTWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       429 ~~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~  482 (482)
                      ++.|+||+++|.|+|+|+|.+    ++.||+++|||+|++.  ..+|.|+.++++|++.|
T Consensus       139 ~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~v  198 (368)
T 1w85_A          139 PPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFV  198 (368)
T ss_dssp             CCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEE
Confidence            357999999999999999964    8999999999999985  34799999999998754

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=98.32  E-value=2.3e-07  Score=99.06  Aligned_cols=53  Identities=19%  Similarity=0.134  Sum_probs=48.2

Q ss_pred             CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~  482 (482)
                      ..|+||+++|+|+|+|+|.    ++++|++++|||+|+  |+.++|.|+.++++|+++|
T Consensus       119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~v  177 (621)
T 2o1s_A          119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVI  177 (621)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE
T ss_pred             CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE
Confidence            4799999999999999995    789999999999999  6778999999999998764

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=98.27  E-value=3.6e-07  Score=91.90  Aligned_cols=53  Identities=13%  Similarity=0.033  Sum_probs=47.0

Q ss_pred             CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~  482 (482)
                      +.|+||+++|.|+|+++|.    +++.||++.|||+|++.  .++|+++.++++|++.|
T Consensus       179 ~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~V  237 (407)
T 1qs0_A          179 ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILN  237 (407)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEE
T ss_pred             cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEE
Confidence            4699999999999999995    58999999999999986  47899999999996643

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=98.27  E-value=4.7e-07  Score=90.25  Aligned_cols=53  Identities=13%  Similarity=-0.029  Sum_probs=42.9

Q ss_pred             CCCcccchHHHHHHHhhh----CCCCcEEEEEcchhccCC-hHH-HHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFGFS-AVE-VEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~~~-~~e-L~T~~r~~l~i~~~  482 (482)
                      ..|++|.++|.|+|+++|    .++++||+++|||+|+++ .+| |.++.++++|++.|
T Consensus       142 ~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~v  200 (367)
T 1umd_A          142 VASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFI  200 (367)
T ss_dssp             CCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEE
Confidence            346666666666665554    688999999999999999 899 99999999997654

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=98.27  E-value=3e-07  Score=97.70  Aligned_cols=52  Identities=17%  Similarity=0.095  Sum_probs=47.4

Q ss_pred             CCCcccchHHHHHHHhhhCC-----CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP-----ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p-----~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|+|+|.+     +++|++++|||+|+  |+.++|.++.++++|.++
T Consensus       119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~li  177 (616)
T 3mos_A          119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLV  177 (616)
T ss_dssp             CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEE
T ss_pred             cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEE
Confidence            46999999999999999976     78999999999999  888999999999998654

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=98.24  E-value=4.9e-07  Score=89.70  Aligned_cols=53  Identities=15%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             CCCcccchHHHHHHHhhhCC----CCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590          430 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI  482 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~  482 (482)
                      +.|+||+++|.|+|+++|.+    ++.||++.|||++++.  ..+|.++.++++|++.|
T Consensus       138 ~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~v  196 (365)
T 2ozl_A          138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFI  196 (365)
T ss_dssp             CCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEE
Confidence            45899999999999999975    8999999999999985  45799999999998754

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=98.17  E-value=5e-07  Score=95.95  Aligned_cols=52  Identities=15%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             CCCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|+|+|.+           +++|++++|||+|+  |+.++|.++.++++|.++
T Consensus       112 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~li  176 (632)
T 3l84_A          112 ATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFI  176 (632)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred             CCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEE
Confidence            35999999999999999987           89999999999999  888999999999998543

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=98.17  E-value=5.2e-07  Score=96.87  Aligned_cols=52  Identities=17%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|+|+|.+              +++|++|+|||+|+  |+.++|.++.++++|.++
T Consensus       153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~li  220 (711)
T 3uk1_A          153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLI  220 (711)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred             CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEE
Confidence            46999999999999999976              78999999999999  688899999999999443

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=98.16  E-value=5.5e-07  Score=96.24  Aligned_cols=52  Identities=15%  Similarity=0.111  Sum_probs=47.1

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|+|+|.+              +++|++++|||+++  |+.++|.++.+++||.++
T Consensus       114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~li  181 (663)
T 3kom_A          114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLV  181 (663)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEE
T ss_pred             CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEE
Confidence            46999999999999999976              79999999999999  678899999999998543

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=98.10  E-value=8.9e-07  Score=95.14  Aligned_cols=52  Identities=21%  Similarity=0.162  Sum_probs=47.1

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|+|+|.+              +++|++++|||+++  |+.++|.++.+++||.++
T Consensus       112 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li  179 (669)
T 2r8o_A          112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLI  179 (669)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred             ccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEE
Confidence            57999999999999999975              78999999999999  778899999999999543

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=98.09  E-value=9.6e-07  Score=94.60  Aligned_cols=52  Identities=15%  Similarity=0.131  Sum_probs=46.9

Q ss_pred             CCCcccchHHHHHHHhhhC--------------CCCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIAC--------------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~--------------p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|+|+|.              ++++|++++|||+++  |+.++|.++.+++||.++
T Consensus       116 ~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li  183 (651)
T 2e6k_A          116 TTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLI  183 (651)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred             ccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEE
Confidence            5799999999999999995              378999999999999  788999999999999543

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=98.07  E-value=1.1e-06  Score=94.28  Aligned_cols=52  Identities=21%  Similarity=0.211  Sum_probs=46.9

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|+|+|+|+|.+              +++|++++|||+++  |+.++|.++.++++|.++
T Consensus       138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~li  205 (690)
T 3m49_A          138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLV  205 (690)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred             CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEE
Confidence            45999999999999999976              89999999999999  678999999999998543

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=98.07  E-value=2.6e-05  Score=88.71  Aligned_cols=97  Identities=11%  Similarity=0.124  Sum_probs=78.0

Q ss_pred             ccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHh---hhcCCCC---eeecCC--CCCcccchHHH------------
Q 011590          382 MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAV---LVQTEPR---CRLDAG--TWGTMGVGLGY------------  440 (482)
Q Consensus       382 ~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~---~~~~~~~---~~~~~~--~~g~mG~~l~~------------  440 (482)
                      ..+++.|.+++    +++.+++++ |.+++|.++++   +..+.++   .|..+.  +.++||||+|+            
T Consensus       817 ~~~ik~l~ql~----g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~~~~  892 (1231)
T 2c42_A          817 TPYVRVITQLF----GERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHLADL  892 (1231)
T ss_dssp             HHHHHHHHHHH----GGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777777    888889888 77788877763   2333444   676663  55999999999            


Q ss_pred             ---------------HH--------------------HHhhhCCC----------------CcEEEEEcch-hccCChHH
Q 011590          441 ---------------CI--------------------AAAIACPE----------------RLVVAVEGDS-GFGFSAVE  468 (482)
Q Consensus       441 ---------------Ai--------------------Gaala~p~----------------~~vi~~~GDG-sf~~~~~e  468 (482)
                                     ||                    |++|+.|+                ++||+|.||| +|+|++||
T Consensus       893 ~~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~~e  972 (1231)
T 2c42_A          893 AAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGG  972 (1231)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTHHH
T ss_pred             HHHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcchHH
Confidence                           99                    99998544                7899999999 99999999


Q ss_pred             HHHHHHcCcccccC
Q 011590          469 VEVWLSCIIMISSI  482 (482)
Q Consensus       469 L~T~~r~~l~i~~~  482 (482)
                      |.|++++|+||++|
T Consensus       973 L~ta~~~~~~v~ii  986 (1231)
T 2c42_A          973 LDHVLASGEDVNVF  986 (1231)
T ss_dssp             HHHHHHTTCSCEEE
T ss_pred             HHHHHHhCCCeEEE
Confidence            99999999999865

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=98.07  E-value=1.4e-06  Score=93.67  Aligned_cols=51  Identities=16%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             CCCcccchHHHHHHHhhhC--------------CCCcEEEEEcchhcc--CChHHHHHHHHcCcccc
Q 011590          430 TWGTMGVGLGYCIAAAIAC--------------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS  480 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~--------------p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~  480 (482)
                      ..|+||+++|+|+|+|+|.              ++++|++++|||+++  |+.++|.++.+++|+.+
T Consensus       125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~l  191 (675)
T 1itz_A          125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKL  191 (675)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred             CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcE
Confidence            4699999999999999996              689999999999999  88999999999999643

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=98.02  E-value=1.5e-06  Score=93.47  Aligned_cols=52  Identities=17%  Similarity=0.161  Sum_probs=46.9

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~  481 (482)
                      ..|+||+++|.|+|+|+|.+              +++|++++|||+++  |+.++|.++.+++||.++
T Consensus       114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li  181 (680)
T 1gpu_A          114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLI  181 (680)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred             ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEE
Confidence            46999999999999999965              78999999999999  888999999999999443

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=97.83  E-value=5.1e-06  Score=89.22  Aligned_cols=51  Identities=18%  Similarity=0.145  Sum_probs=45.4

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCC--hHHHHHHHHcCcccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFS--AVEVEVWLSCIIMIS  480 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~  480 (482)
                      ..|+||+++|.|+|+|+|.+              +++|++++|||++++.  ..++.++.+++||.+
T Consensus       114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~l  180 (673)
T 1r9j_A          114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKL  180 (673)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTE
T ss_pred             ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcE
Confidence            46999999999999999964              7899999999999964  678999999999844

>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*

Probab=97.11  E-value=0.00049  Score=66.70  Aligned_cols=113  Identities=15%  Similarity=0.246  Sum_probs=82.4

Q ss_pred             EEEE-cCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590          222 LIVF-GKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP  298 (482)
Q Consensus       222 vil~-G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~  298 (482)
                      +|+. |.|....+..+.+.+||+.||+-|-+|...  .|.+|.  .+.+|..+ ..+.-|+|-|++|.+=--+...|   
T Consensus       204 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTG-k~V~P~~lYiA~GISGAiQHlaG---  277 (320)
T 1o97_D          204 FIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPK--SRQVGQSG-KVVGSCKLYVAMGISGSIQHMAG---  277 (320)
T ss_dssp             EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTS-BCCTTCSEEEEESCCCCHHHHHH---
T ss_pred             EEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeecCc-eEecccceEEEEeccCcHHHHhh---
Confidence            4444 555554567899999999999999887542  465655  44566543 34455799999998765443333   


Q ss_pred             CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                       ......||-||.||+..=+...|..+++|+.+++++|.+.++
T Consensus       278 -m~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~  319 (320)
T 1o97_D          278 -MKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA  319 (320)
T ss_dssp             -HTTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred             -cccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence             234567999999998776666799999999999999999874

>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*

Probab=97.00  E-value=0.0014  Score=63.40  Aligned_cols=114  Identities=16%  Similarity=0.173  Sum_probs=82.7

Q ss_pred             CEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590          221 PLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP  298 (482)
Q Consensus       221 pvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~  298 (482)
                      .|+-.|.|....+..+.+.+||+.||+-|-+|...  .|.+|.  .+.+|..+.  .=..+|-|++|.+=--+...|   
T Consensus       199 ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk--~V~P~lYiA~GISGAiQHlaG---  271 (315)
T 1efv_A          199 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQTGK--IVAPELYIAVGISGAIQHLAG---  271 (315)
T ss_dssp             EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB--CCCCSEEEEESCCCCHHHHTT---
T ss_pred             EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCH--HheeccCCc--ccCcceEEEecccCcHHHHhh---
Confidence            44444555554567889999999999999887542  466655  445664331  114799999998765544444   


Q ss_pred             CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                       ......||-||.||+..=+...|..+++|+.+++++|.+.+++
T Consensus       272 -m~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~~  314 (315)
T 1efv_A          272 -MKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK  314 (315)
T ss_dssp             -TTTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC-
T ss_pred             -cccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHhc
Confidence             3445679999999987766667999999999999999999853

>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*

Probab=97.00  E-value=0.0021  Score=60.96  Aligned_cols=70  Identities=14%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh-hc--ccCCceeEeccHHHHHHHHHHhhh
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE-IE--LRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~-~~--~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ...+++||++|+||+++..+...+.+.....+.+++.||.++.. +.  ....|+.+.+|+...+++|.+.+.
T Consensus       192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lg  264 (285)
T 3glr_A          192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLG  264 (285)
T ss_dssp             HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhC
Confidence            45678999999999999765433333334566788999998753 22  234589999999999999999875

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=96.77  E-value=0.00044  Score=74.05  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=43.4

Q ss_pred             CCCcccchHHHHHHHhhhCC-----------------CCcEEEEEcchhccCC--hHHHHHHHHcCcc-cc
Q 011590          430 TWGTMGVGLGYCIAAAIACP-----------------ERLVVAVEGDSGFGFS--AVEVEVWLSCIIM-IS  480 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p-----------------~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~-i~  480 (482)
                      ..|++|.++|.|+|.|+|.+                 ++.|++++|||+++..  ..++.++.+++|| ++
T Consensus       131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli  201 (700)
T 3rim_A          131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLI  201 (700)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEE
Confidence            35899999999999999843                 6899999999999964  4579999999997 44

>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2

Probab=96.64  E-value=0.0034  Score=60.44  Aligned_cols=112  Identities=15%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             CEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590          221 PLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP  298 (482)
Q Consensus       221 pvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~  298 (482)
                      .++-.|.|....+..+.+.+||+++|+-|-+|...  .|.+|.+  +.+|..+.  .=..+|-|++|.+=--+...|   
T Consensus       194 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~--~QVGqTGk--~V~P~lYiA~GISGAiQHlaG---  266 (307)
T 1efp_A          194 RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPND--WQVGQTGK--VVAPELYVAVGISGAIQHLAG---  266 (307)
T ss_dssp             EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSSSSB--CCCCSEEEEESCCCCHHHHTT---
T ss_pred             EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChh--hEeccCCc--ccCCceEEEEeccCcHHHHhh---
Confidence            34444555554567889999999999999887542  3666553  45664331  114799999998765544444   


Q ss_pred             CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhh
Q 011590          299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI  340 (482)
Q Consensus       299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l  340 (482)
                       ......||-||.||+..=+...|..+++|+.+++++|.+.+
T Consensus       267 -m~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l  307 (307)
T 1efp_A          267 -MKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL  307 (307)
T ss_dssp             -TTTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred             -hccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence             34456799999999877666679999999999999998864

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B

Probab=96.49  E-value=0.045  Score=53.50  Aligned_cols=114  Identities=11%  Similarity=0.009  Sum_probs=82.5

Q ss_pred             CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhh---------CCCcEEEEeCCCCcccCCCC-
Q 011590           52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMI---------NTWPIVMISGSCDQKDFGRG-  120 (482)
Q Consensus        52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~---------~~~Pvl~i~g~~~~~~~~~~-  120 (482)
                      -+++.+ -.|++++.+|.|++.. |...++..|.+..+.-+.-.|.++-.         .++||+++... .. .-+.+ 
T Consensus        62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~-~g~~G~  138 (341)
T 2ozl_B           62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA-SAGVAA  138 (341)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC-CSSCCG
T ss_pred             CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC-CCCCCc
Confidence            588887 5999999999999987 55444445778888778888876433         89999998764 22 11122 


Q ss_pred             CC-CCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590          121 DF-QELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus       121 ~~-q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      .| |.+|  .+++.+..+... +.++.++..++..|++    . ++||+|..|..+.
T Consensus       139 tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i~~~~~~~  188 (341)
T 2ozl_B          139 QHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIR----D-NNPVVVLENELMY  188 (341)
T ss_dssp             GGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHH----S-SSCEEEEECHHHH
T ss_pred             chhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHh----c-CCCEEEEEChhhh
Confidence            34 5554  788888777664 4577788888888776    2 4999999997653

>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5

Probab=96.46  E-value=0.0062  Score=59.01  Aligned_cols=71  Identities=13%  Similarity=0.053  Sum_probs=50.7

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc-------------------cCCceeEeccHHH
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL-------------------RKPHLGLVGDAKK  331 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~-------------------~~~~~~i~~D~~~  331 (482)
                      ....+++||++|+||+++..+...+.+....++...+.||.++.....                   ...++.+.+|+..
T Consensus       214 a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~  293 (323)
T 1j8f_A          214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ  293 (323)
T ss_dssp             HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred             HHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHH
Confidence            345778999999999999765433333334444566789987754321                   2247899999999


Q ss_pred             HHHHHHHhhh
Q 011590          332 VLEMINKEIK  341 (482)
Q Consensus       332 ~l~~L~~~l~  341 (482)
                      ++.+|.+.+.
T Consensus       294 ~l~~L~~~lg  303 (323)
T 1j8f_A          294 GCLALAELLG  303 (323)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999998864

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*

Probab=96.36  E-value=0.045  Score=53.10  Aligned_cols=117  Identities=11%  Similarity=-0.014  Sum_probs=79.9

Q ss_pred             CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--hh---h----CCCcEEEEeCCCCcccCCCCC
Q 011590           52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--GM---I----NTWPIVMISGSCDQKDFGRGD  121 (482)
Q Consensus        52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~--A~---~----~~~Pvl~i~g~~~~~~~~~~~  121 (482)
                      -+++.+ -.|++++.+|.|++.. |...++..|.++.+.-+.-.|.+  |+   .    .++|++++.. +.....+...
T Consensus        51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~  128 (324)
T 1umd_B           51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH  128 (324)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG
T ss_pred             CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc
Confidence            467755 8999999999999998 55444445778887777777754  32   1    7999998864 2111112112


Q ss_pred             CCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          122 FQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       122 ~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      +|..| ..+++.+..+.. .+.++.++..++..|++     .++||++..|..+..
T Consensus       129 hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~~  178 (324)
T 1umd_B          129 HSQSP-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVFLEPKRLYR  178 (324)
T ss_dssp             SSCCC-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEEEEEGGGSS
T ss_pred             cchhH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEEEechHhcC
Confidence            33333 588888877554 45677888888888875     349999988876643

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*

Probab=96.13  E-value=0.024  Score=55.05  Aligned_cols=117  Identities=9%  Similarity=-0.062  Sum_probs=80.3

Q ss_pred             CcEEecC-chHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--hh---h----CCCcEEEEeCCCCcccCCCCC
Q 011590           52 VRFIAFH-NEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--GM---I----NTWPIVMISGSCDQKDFGRGD  121 (482)
Q Consensus        52 i~~v~~~-~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~--A~---~----~~~Pvl~i~g~~~~~~~~~~~  121 (482)
                      -+++.+- .|++++.+|.|++.. |...++..|.++++.-+.-.|.+  |+   .    .++|++++.. +.....+ +.
T Consensus        50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~-g~  126 (324)
T 1w85_B           50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHT-PE  126 (324)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCC-CT
T ss_pred             CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCC-CC
Confidence            5788764 999999999999987 55444444788888777777764  32   2    7999998853 2111112 22


Q ss_pred             CCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          122 FQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       122 ~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      +++..+..+++.+.++.. .+.++.++..++..|++     .++||++..|..+..
T Consensus       127 ~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~r  177 (324)
T 1w85_B          127 LHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIFLEHLKLYR  177 (324)
T ss_dssp             TSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEEEETTTSS
T ss_pred             cccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEEEechHhcC
Confidence            332234588999887555 45677888888888875     349999988876643

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B

Probab=96.12  E-value=0.045  Score=53.43  Aligned_cols=117  Identities=8%  Similarity=-0.017  Sum_probs=82.5

Q ss_pred             CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--h---hh----CCCcEEEEeCCCCcccCCCCC
Q 011590           52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--G---MI----NTWPIVMISGSCDQKDFGRGD  121 (482)
Q Consensus        52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~--A---~~----~~~Pvl~i~g~~~~~~~~~~~  121 (482)
                      -+++.+ -.|++++.+|.|++.. |...++..|.++++.-+.-.|.+  |   |.    .++||+++..... . ..-+.
T Consensus        52 ~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~-~~G~t  128 (338)
T 1qs0_B           52 SRVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G-IYGGQ  128 (338)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S-SSCCS
T ss_pred             CcEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C-CCCcc
Confidence            488876 6999999999999998 54444445788888777787763  3   21    3599998873322 1 12245


Q ss_pred             CCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          122 FQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       122 ~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      ||......+++.+-++... +.++.++..++..|++    . ++||+|..|..+..
T Consensus       129 h~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~----~-~~Pv~i~~p~~l~r  179 (338)
T 1qs0_B          129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIE----C-DDPVIFLEPKRLYN  179 (338)
T ss_dssp             SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHH----S-SSCEEEEEEGGGSS
T ss_pred             cccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----c-CCcEEEEEchHhhc
Confidence            6776677889988776554 5677888888888776    2 49999988865543

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=95.99  E-value=0.003  Score=69.38  Aligned_cols=49  Identities=20%  Similarity=0.061  Sum_probs=43.7

Q ss_pred             CCCcccchHHHHHHHhhhC-----------CCCcEEEEEcchhcc--CChHHHHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~-----------p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~  478 (482)
                      ..|+||.+++.|+|+|+++           +++.|++|+|||++.  ++..+|..+.+++|+
T Consensus       190 ~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~  251 (886)
T 2qtc_A          190 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLD  251 (886)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCT
T ss_pred             cccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCC
Confidence            4699999999999999973           478999999999999  677889999999986

>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*

Probab=95.63  E-value=0.035  Score=47.11  Aligned_cols=129  Identities=24%  Similarity=0.292  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch-------------
Q 011590          207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA-------------  269 (482)
Q Consensus       207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~-------------  269 (482)
                      ..++++++|..|++.+|+-|+|..-+.+.-.+.+|++.|   |+-|=-- ..-.|-.|.    .+..             
T Consensus        12 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hmNVLLAEA~VPYd~v~   87 (180)
T 1pno_A           12 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPG----HMNVLLAEANVPYDEVF   87 (180)
T ss_dssp             CHHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTT----HHHHHHHHTTCCGGGEE
T ss_pred             CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCC----cceEEEEeeCCCHHHHh
Confidence            367899999999999999999998888887777777765   4433110 000111111    1111             


Q ss_pred             ---HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCCc--hhhc-----ccCC-ceeEec
Q 011590          270 ---ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVCK--EEIE-----LRKP-HLGLVG  327 (482)
Q Consensus       270 ---~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d~--~~~~-----~~~~-~~~i~~  327 (482)
                         ..|.-+.+.|++|+||++-..         ...+|-+  .-|. -.++|.+-..-  ...+     ++++ +.-+.|
T Consensus        88 EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfG  166 (180)
T 1pno_A           88 ELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEK-AGTVLFIKRSMASGYAGVENELFFRNNTMMLFG  166 (180)
T ss_dssp             EHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGTSTTEEEEES
T ss_pred             hHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhh-CCEEEEEECCCCCCcCCCcCcceecCCceEEec
Confidence               134457789999999976421         1112221  1121 22343333211  1111     3444 567899


Q ss_pred             cHHHHHHHHHHhh
Q 011590          328 DAKKVLEMINKEI  340 (482)
Q Consensus       328 D~~~~l~~L~~~l  340 (482)
                      |++..+++|...+
T Consensus       167 DAK~~~~~l~~~l  179 (180)
T 1pno_A          167 DAKKMTEQIVQAM  179 (180)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHh
Confidence            9999999998765

>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4

Probab=95.63  E-value=0.036  Score=47.21  Aligned_cols=131  Identities=23%  Similarity=0.356  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch-------------
Q 011590          207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA-------------  269 (482)
Q Consensus       207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~-------------  269 (482)
                      ..++++++|..|++.+|+-|+|..-+.+.-.+.+|++.|   |+-|=-. ..-.|-.|.    .+..             
T Consensus        11 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hMNVLLAEA~VPYd~v~   86 (184)
T 1d4o_A           11 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPG----QLNVLLAEAGVPYDIVL   86 (184)
T ss_dssp             CHHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTT----HHHHHHHHHTCCGGGEE
T ss_pred             CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCC----cceEEEEEecCCHHHHH
Confidence            467889999999999999999998888887777777765   4433110 000111111    1111             


Q ss_pred             ---HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCC--chhhc-----ccCC-ceeEec
Q 011590          270 ---ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVC--KEEIE-----LRKP-HLGLVG  327 (482)
Q Consensus       270 ---~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d--~~~~~-----~~~~-~~~i~~  327 (482)
                         ..|.-+.+.|++|+||++-..         ...+|-+  .-|. -.++|.+-..  +...+     ++++ +.-+.|
T Consensus        87 EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfG  165 (184)
T 1d4o_A           87 EMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLG  165 (184)
T ss_dssp             EHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGG-SSCEEEEESSSCCCTTCCCCGGGGSTTEEEEES
T ss_pred             hHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhh-CCEEEEEECCCCCCcCCCcCcceecCCceEEec
Confidence               134457789999999976421         1122322  1232 2234434322  11111     3444 567899


Q ss_pred             cHHHHHHHHHHhhhc
Q 011590          328 DAKKVLEMINKEIKD  342 (482)
Q Consensus       328 D~~~~l~~L~~~l~~  342 (482)
                      |++..+++|...+++
T Consensus       166 DAK~~~~~l~~~l~~  180 (184)
T 1d4o_A          166 DAKKTCDALQAKVRE  180 (184)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999998864

>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*

Probab=95.62  E-value=0.037  Score=48.25  Aligned_cols=131  Identities=23%  Similarity=0.355  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch-------------
Q 011590          207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA-------------  269 (482)
Q Consensus       207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~-------------  269 (482)
                      ..++++++|..|++.+|+-|+|..-+.+...+.+|++.|   |+-|=-- ..-.|-.|.    .+..             
T Consensus        34 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hMNVLLAEA~VPYd~v~  109 (207)
T 1djl_A           34 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPG----QLNVLLAEAGVPYDIVL  109 (207)
T ss_dssp             CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTT----HHHHHHHHTTCCGGGEE
T ss_pred             CHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCC----CCcEEEEEeCCCHHHHh
Confidence            457889999999999999999998888887777777765   4433110 000111111    1111             


Q ss_pred             ---HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCCc--hhhc-----ccCC-ceeEec
Q 011590          270 ---ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVCK--EEIE-----LRKP-HLGLVG  327 (482)
Q Consensus       270 ---~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d~--~~~~-----~~~~-~~~i~~  327 (482)
                         ..|.-+.+.|++|+||++-..         ...+|-+  .-|. -.++|.+-..-  ...+     ++++ +.-+.|
T Consensus       110 EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfG  188 (207)
T 1djl_A          110 EMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLG  188 (207)
T ss_dssp             EHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTEEEEES
T ss_pred             hHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeeccee-cCEEEEEECCCCCCcCCCcCcceecCCceEEec
Confidence               134457789999999976421         1123322  1122 22344343221  1111     3444 566899


Q ss_pred             cHHHHHHHHHHhhhc
Q 011590          328 DAKKVLEMINKEIKD  342 (482)
Q Consensus       328 D~~~~l~~L~~~l~~  342 (482)
                      |++..+++|...+++
T Consensus       189 DAK~~~~~l~~~l~~  203 (207)
T 1djl_A          189 DAKKTCDALQAKVRE  203 (207)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999998874

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=95.58  E-value=0.056  Score=57.82  Aligned_cols=117  Identities=13%  Similarity=0.029  Sum_probs=82.0

Q ss_pred             CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC-C-CCCCCcCHh
Q 011590           52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQV  128 (482)
Q Consensus        52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~d~~  128 (482)
                      -+++.+ -.|++++.+|.|++...|...++ .|..+.+.-+..+|..+-..+.||+++....... .| . ..||.+.++
T Consensus       402 ~R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq~~edl  479 (669)
T 2r8o_A          402 GNYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQPVEQV  479 (669)
T ss_dssp             CSEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCSSHH
T ss_pred             CCeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccCCHHHH
Confidence            466654 48999999999999985544444 4667777778888999889999999996422222 23 2 347888889


Q ss_pred             hhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          129 EAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       129 ~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+++.+-.... .+.++.++..++..|+    ....+|+||.+|...
T Consensus       480 a~lr~iP~l~V~~Pad~~E~~~~l~~a~----~~~~~Pv~i~~~r~~  522 (669)
T 2r8o_A          480 ASLRVTPNMSTWRPCDQVESAVAWKYGV----ERQDGPTALILSRQN  522 (669)
T ss_dssp             HHHHTSTTCEEECCSSHHHHHHHHHHHH----HCSSSCEEEECCSSE
T ss_pred             HHhcCCCCCEEEecCCHHHHHHHHHHHH----HhCCCcEEEEeCCCC
Confidence            99998866544 3445555555555555    443599999999754

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=95.52  E-value=0.16  Score=53.63  Aligned_cols=150  Identities=13%  Similarity=0.036  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      .+++|.+.+++ .=+.+.+-+......+.+.+.+ ..-+++.+ -.|++++.+|.|.+....++ ++..|+++++.-+..
T Consensus       319 ~~~~L~~l~~~-d~~vv~~~aD~~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~-~~~~~f~~Fl~~a~d  396 (616)
T 3mos_A          319 YGQALAKLGHA-SDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTV-PFCSTFAAFFTRAFD  396 (616)
T ss_dssp             HHHHHHHHHHH-CTTEEEEESSCHHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCE-EEEEEEGGGGGGGHH
T ss_pred             HHHHHHHHHhh-CCCEEEEeCCcCCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCC-EEEEehHHHHHHHHH
Confidence            34444444433 3344444444322223344432 22377755 59999999999999986543 444577888999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      .|..+...+.|++++.. ...-..|.  ..+|.+....+++.+-..... +.++.++..++    +.|... +||++|..
T Consensus       397 qi~~~a~~~~~v~~v~~-~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l----~~a~~~-~gp~~ir~  470 (616)
T 3mos_A          397 QIRMAAISESNINLCGS-HCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAV----ELAANT-KGICFIRT  470 (616)
T ss_dssp             HHHHHHHTTCCEEEEEE-SBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHH----HHHHTC-CSEEEEEC
T ss_pred             HHHHHHHhCCCeEEEEE-CCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHH----HHHHhc-CCCEEEEE
Confidence            99988889999988743 32222332  246778888999998876543 33455554444    445454 49999999


Q ss_pred             Ccc
Q 011590          171 PTD  173 (482)
Q Consensus       171 P~d  173 (482)
                      |.+
T Consensus       471 ~r~  473 (616)
T 3mos_A          471 SRP  473 (616)
T ss_dssp             CSS
T ss_pred             eCC
Confidence            875

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...

Probab=95.50  E-value=0.037  Score=54.13  Aligned_cols=118  Identities=9%  Similarity=-0.042  Sum_probs=82.5

Q ss_pred             CcEEecC-chHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--h---hh----CCC-cEEEEeCCCCcccCCCC
Q 011590           52 VRFIAFH-NEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--G---MI----NTW-PIVMISGSCDQKDFGRG  120 (482)
Q Consensus        52 i~~v~~~-~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~--A---~~----~~~-Pvl~i~g~~~~~~~~~~  120 (482)
                      -+++.+- .|++++.+|.|++.. |...++..|.++++.-+.-.|.+  |   +.    -++ ||+++......  .+-+
T Consensus        67 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~--~~G~  143 (342)
T 2bfd_B           67 DRVFNTPLCEQGIVGFGIGIAVT-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV--GHGA  143 (342)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHT-TCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC--SSCG
T ss_pred             CeEEEcCcCHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC--CCCc
Confidence            4788775 999999999999998 54444445789988877777753  3   21    134 99998553221  1224


Q ss_pred             CCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhcc
Q 011590          121 DFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ  177 (482)
Q Consensus       121 ~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~  177 (482)
                      .+|......+++.+-++.. .+.++.++..++..|++    . ++||+|..|..+...
T Consensus       144 th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i~~p~~l~r~  196 (342)
T 2bfd_B          144 LYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----D-KNPCIFFEPKILYRA  196 (342)
T ss_dssp             GGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----S-SSCEEEEEEGGGTTS
T ss_pred             chhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----c-CCcEEEEecchhcCC
Confidence            5677666788888877544 45677888888888776    2 499999888766443

>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.012  Score=57.70  Aligned_cols=69  Identities=17%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ...+++||++|+||+++..+...+.+..+..+.++|.||.++...  ...++.+.+|+..++.+|.+.+.-
T Consensus       250 ~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~--~~~dl~i~g~~~~vl~~L~~~lgw  318 (354)
T 2hjh_A          250 REDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH--AEFDLSLLGYCDDIAAMVAQKCGW  318 (354)
T ss_dssp             HHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTT--SCCSEEEESCHHHHHHHHHHHHTC
T ss_pred             HHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCC--CCcCEEEeCCHHHHHHHHHHHcCC
Confidence            456788999999999997654333222334577899999988653  235899999999999999998864

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=95.49  E-value=0.0028  Score=69.50  Aligned_cols=49  Identities=12%  Similarity=-0.054  Sum_probs=42.9

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhc--cCChHH-HHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGF--GFSAVE-VEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf--~~~~~e-L~T~~r~~l~  478 (482)
                      +.+.||.++|.|+|+++|.+              +..|+++.|||+|  ++..+| |.++..+++|
T Consensus       243 n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp  308 (868)
T 2yic_A          243 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR  308 (868)
T ss_dssp             CCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTC
T ss_pred             CCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCC
Confidence            35889999999999999953              3479999999998  688999 9999999998

>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*

Probab=95.46  E-value=0.0092  Score=56.98  Aligned_cols=68  Identities=21%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             hhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh-hc--ccCCceeEeccHHHHHHHHHHhhh
Q 011590          274 AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE-IE--LRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       274 ~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~-~~--~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      .+++||++|+||+++..+...+.+.....++++|.||.++.. ..  ....++.+.+|+..+|++|.+.+.
T Consensus       208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~  278 (289)
T 1q1a_A          208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG  278 (289)
T ss_dssp             --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred             HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence            367899999999998754322222223457889999998864 21  223589999999999999998764

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=95.46  E-value=0.087  Score=56.15  Aligned_cols=117  Identities=10%  Similarity=0.047  Sum_probs=80.0

Q ss_pred             CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEe-CCCCcccCCCCCCCCcCHhh
Q 011590           52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMIS-GSCDQKDFGRGDFQELDQVE  129 (482)
Q Consensus        52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~-g~~~~~~~~~~~~q~~d~~~  129 (482)
                      =+++.+ --|++++.+|.|.+...|...++. |..+-+.-+...|..+-..+.||+++. .+.-.-...-..||.+.+..
T Consensus       403 ~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a  481 (663)
T 3kom_A          403 ANYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVP  481 (663)
T ss_dssp             CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred             CCeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHH
Confidence            366654 789999999999998845544433 366777777788888888999999985 33322111234578888899


Q ss_pred             hhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          130 AVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       130 ~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      +++.+....... .++.++    ..+++.|....++||+|.+|..
T Consensus       482 ~lr~iPnl~V~~Pad~~e~----~~~l~~A~~~~~~Pv~ir~~r~  522 (663)
T 3kom_A          482 SLRLIPNLSVWRPADTIET----MIAWKEAVKSKDTPSVMVLTRQ  522 (663)
T ss_dssp             HHHTSTTCEEECCCSHHHH----HHHHHHHHHCSSCCEEEECCSS
T ss_pred             HHhcCCCcEEEeeCCHHHH----HHHHHHHHHhCCCCEEEEccCc
Confidence            999988754433 344444    4555555553459999999864

>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*

Probab=95.40  E-value=0.037  Score=48.04  Aligned_cols=129  Identities=25%  Similarity=0.340  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch-------------
Q 011590          207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA-------------  269 (482)
Q Consensus       207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~-------------  269 (482)
                      ..++++++|..|++.+|+-|+|..-+.+...+.+|++.|   |+-|=-- ..-.|-.|.    .+..             
T Consensus        35 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hMNVLLAEA~VPYd~v~  110 (203)
T 2fsv_C           35 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPG----HMNVLLAEANVPYDEVF  110 (203)
T ss_dssp             CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTT----HHHHHHHHTTCCGGGEE
T ss_pred             CHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccccCCCC----CccEEEEEecCCHHHHh
Confidence            467789999999999999999998888887777777765   4433110 000111111    1111             


Q ss_pred             ---HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCCc--hhhc-----ccCC-ceeEec
Q 011590          270 ---ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVCK--EEIE-----LRKP-HLGLVG  327 (482)
Q Consensus       270 ---~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d~--~~~~-----~~~~-~~~i~~  327 (482)
                         ..|.-+.+.|++|+||++-..         ...+|-+  .-|. -.++|.+-..-  ...+     ++++ +.-+.|
T Consensus       111 EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfG  189 (203)
T 2fsv_C          111 ELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWK-AGTVLFIKRSMASGYAGVENELFFRNNTMMLFG  189 (203)
T ss_dssp             EHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTEEEEES
T ss_pred             hHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeecccc-CCEEEEEECCCCCCcCCCcCcceecCCceEEec
Confidence               133456789999999976421         1112221  1121 22344333221  1111     3444 566899


Q ss_pred             cHHHHHHHHHHhh
Q 011590          328 DAKKVLEMINKEI  340 (482)
Q Consensus       328 D~~~~l~~L~~~l  340 (482)
                      |++..+++|...+
T Consensus       190 DAK~~~~~l~~~l  202 (203)
T 2fsv_C          190 DAKKMTEQIVQAM  202 (203)
T ss_dssp             CHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHh
Confidence            9999999998765

>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.014  Score=59.02  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhcC
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDE  343 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~  343 (482)
                      ...+++||++|++|+++..+...+.+..++.++++|.||.++...  ...|+.+.||...++..|.+.+...
T Consensus       388 ~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~--~~~Dl~l~G~cdevv~~L~~~LGw~  457 (492)
T 4iao_A          388 REDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH--AEFDLSLLGYCDDIAAMVAQKCGWT  457 (492)
T ss_dssp             HHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT--SCCSEEEESCHHHHHHHHHHHTTCC
T ss_pred             HHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC--CCccEEEeCCHHHHHHHHHHHhCCC
Confidence            356789999999999997654433322335567889999987542  2358999999999999999998754

>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5

Probab=95.32  E-value=0.023  Score=55.73  Aligned_cols=68  Identities=21%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             hhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh-hc--ccCCceeEeccHHHHHHHHHHhhh
Q 011590          274 AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE-IE--LRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       274 ~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~-~~--~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      .+.+||++|+||+++..+...+.+..+..++++|.||.++.. ..  ....++.+.+|+..+|.+|.+.+.
T Consensus       216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg  286 (361)
T 1q14_A          216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG  286 (361)
T ss_dssp             ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT
T ss_pred             hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC
Confidence            456899999999998765433322223457889999998864 21  233589999999999999998764

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=95.14  E-value=0.18  Score=53.49  Aligned_cols=150  Identities=10%  Similarity=0.098  Sum_probs=97.6

Q ss_pred             CCcHHHHHHHHHHhcC--CCEEEec----CCc-ChHHHHHHHHhCCCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590           13 QIDGNTLAAKSLSLFG--ATHMFGV----VGI-PVTSLANRAVQLGVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVS   84 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~G--v~~vFgv----pG~-~~~~l~~al~~~~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~   84 (482)
                      .++..+++.+.|.+..  =+.++.+    +++ ....|.+.   -.-+++.+ -.|++++.+|.|.+...-||-+.+  +
T Consensus       321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~---~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~--~  395 (629)
T 2o1x_A          321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRV---HPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI--Y  395 (629)
T ss_dssp             CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHH---CGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE--E
T ss_pred             hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHh---cCcceEeccccHHHHHHHHHHHHHcCCEEEEEe--c
Confidence            4566666666555442  2335544    443 33344432   23477774 499999999999999744444433  6


Q ss_pred             ChhhHhhHHH-HHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhc
Q 011590           85 GPGCVHGLAG-LSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVS  160 (482)
Q Consensus        85 GpG~~N~~~a-i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~  160 (482)
                      .+.+.-+.-- +..+-..+.||+++......  .+  ...||...+..+++.+..+... +.++.++..++..|++.   
T Consensus       396 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~---  470 (629)
T 2o1x_A          396 STFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH---  470 (629)
T ss_dssp             HHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC---
Confidence            6776655544 44467789999998854332  23  2357777778899998776654 45677777777777764   


Q ss_pred             CCCceEEEEcCcch
Q 011590          161 GRPGGCYLDLPTDV  174 (482)
Q Consensus       161 ~~~gPv~l~iP~dv  174 (482)
                        ++||+|.+|...
T Consensus       471 --~~Pv~i~~~r~~  482 (629)
T 2o1x_A          471 --DGPFAIRYPRGN  482 (629)
T ss_dssp             --SSCEEEECCSSB
T ss_pred             --CCCEEEEecCCC
Confidence              499999999753

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2

Probab=95.10  E-value=0.059  Score=53.26  Aligned_cols=116  Identities=12%  Similarity=-0.069  Sum_probs=74.2

Q ss_pred             CcEEecC-chHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH-hhhC--------CCcEEEEeCCCCcccCCCCC
Q 011590           52 VRFIAFH-NEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN-GMIN--------TWPIVMISGSCDQKDFGRGD  121 (482)
Q Consensus        52 i~~v~~~-~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~-A~~~--------~~Pvl~i~g~~~~~~~~~~~  121 (482)
                      -+++.+- .|++++.+|.|++.. |...++..|.++.+.-+.-.|.+ +-..        ++||+++.....  ..+.+.
T Consensus        98 ~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg--~~g~g~  174 (369)
T 1ik6_A           98 ERVIDTPLNEGGILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS--GTRGGL  174 (369)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------
T ss_pred             CcEEECcccHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC--CCCCCc
Confidence            5788754 999999999999987 54444444678877777777755 3222        899998775333  223333


Q ss_pred             -CCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          122 -FQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       122 -~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                       +|..| ..+++.+..+... +.++.++..++..|++     .++||+|..|..+..
T Consensus       175 ~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-----~~~Pv~i~~p~~l~r  225 (369)
T 1ik6_A          175 YHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-----GDDPVVFLEPKILYR  225 (369)
T ss_dssp             -----H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-----SSSCEEEEEEGGGSS
T ss_pred             cccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEehhhhc
Confidence             34444 6889988877665 4577788888888775     248999998877653

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=94.88  E-value=0.11  Score=55.45  Aligned_cols=118  Identities=13%  Similarity=0.058  Sum_probs=80.8

Q ss_pred             CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEe-CCCCcccCCCCCCCCcCHhh
Q 011590           52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMIS-GSCDQKDFGRGDFQELDQVE  129 (482)
Q Consensus        52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~-g~~~~~~~~~~~~q~~d~~~  129 (482)
                      -+++.+ -.|++++.+|.|++...|.. .+..|+.+...=+..+|..+-..+.||+++. .+...-...-..||.+.+..
T Consensus       397 ~R~i~~gIaE~~~~~~a~GlA~~Gg~~-P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla  475 (651)
T 2e6k_A          397 GRYLHFGVREHAMGAILNGLNLHGGYR-AYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLM  475 (651)
T ss_dssp             CCEEECCSCHHHHHHHHHHHHHHSSCE-EEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred             CceEecCcCHHHHHHHHHHHHHcCCCE-EEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHH
Confidence            467765 48999999999999875333 2334556666667778888888999999984 33322111123578888889


Q ss_pred             hhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          130 AVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       130 ~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +++.+-.+.. .+.++.++..++..|++    ...+||+|.+|...
T Consensus       476 ~lr~iP~l~V~~Pad~~E~~~~l~~A~~----~~~~Pv~i~~~r~~  517 (651)
T 2e6k_A          476 SLRAMPNLFVIRPADAYETFYAWLVALR----RKEGPTALVLTRQA  517 (651)
T ss_dssp             HHHTSTTCEEECCSSHHHHHHHHHHHHH----CCSSCEEEECCSSC
T ss_pred             HhcCCCCcEEEecCCHHHHHHHHHHHHH----cCCCCEEEEEeCCC
Confidence            9999866554 34556666666666654    33589999999754

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=94.85  E-value=0.25  Score=52.31  Aligned_cols=151  Identities=11%  Similarity=0.073  Sum_probs=96.6

Q ss_pred             CCcHHHHHHHHHHhcC--CCEEEec----CCc-ChHHHHHHHHhCCCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590           13 QIDGNTLAAKSLSLFG--ATHMFGV----VGI-PVTSLANRAVQLGVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVS   84 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~G--v~~vFgv----pG~-~~~~l~~al~~~~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~   84 (482)
                      .++..+++.+.|.+..  =+.++.+    +++ ....|.+   +-.-+++.+ -.|++++.+|.|.+...-||-+. + .
T Consensus       318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~---~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~-~-~  392 (621)
T 2o1s_A          318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSR---KFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVA-I-Y  392 (621)
T ss_dssp             CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHH---HCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEE-E-E
T ss_pred             hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHH---hCCCceEecCcCHHHHHHHHHHHHHCCCEEEEE-e-h
Confidence            3466666666555442  2335544    443 3333333   234578875 59999999999999974343333 3 6


Q ss_pred             ChhhHhhHHH-HHHhhhCCCcEEEEeCCCCcccCC-C-CCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhc
Q 011590           85 GPGCVHGLAG-LSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVS  160 (482)
Q Consensus        85 GpG~~N~~~a-i~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~  160 (482)
                      .+.+.-+.-- +..+-..++||+++......  .+ . ..||......+++.+..+... +.++.++..++..|++..  
T Consensus       393 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~--  468 (621)
T 2o1s_A          393 STFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN--  468 (621)
T ss_dssp             TTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC--
T ss_pred             HhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC--
Confidence            7777656544 45566789999998854332  23 2 346766667889998776554 456777777777777532  


Q ss_pred             CCCceEEEEcCcch
Q 011590          161 GRPGGCYLDLPTDV  174 (482)
Q Consensus       161 ~~~gPv~l~iP~dv  174 (482)
                        ++||+|..|...
T Consensus       469 --~~Pv~i~~~r~~  480 (621)
T 2o1s_A          469 --DGPSAVRYPRGN  480 (621)
T ss_dssp             --SSCEEEECCSSB
T ss_pred             --CCCEEEEeCCCC
Confidence              489999999754

>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5

Probab=94.84  E-value=0.023  Score=52.52  Aligned_cols=70  Identities=11%  Similarity=0.076  Sum_probs=49.5

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ....+++||++|+||+++..+.....+... ..++++|.||.++..... ..++.+.+|+.++|++|.+.+.
T Consensus       161 a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~-~~~~~i~~~~~~~l~~l~~~l~  231 (235)
T 1s5p_A          161 IYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN-EFAEKYYGPASQVVPEFVEKLL  231 (235)
T ss_dssp             HHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC----CCSEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCc-cccEEEeCCHHHHHHHHHHHHH
Confidence            346788999999999998754322211111 236889999998865432 4588999999999999987764

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=94.76  E-value=0.1  Score=55.23  Aligned_cols=116  Identities=11%  Similarity=-0.095  Sum_probs=79.2

Q ss_pred             cEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEe-CCCCcccCCCCCCCCcCHhhh
Q 011590           53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMIS-GSCDQKDFGRGDFQELDQVEA  130 (482)
Q Consensus        53 ~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~-g~~~~~~~~~~~~q~~d~~~~  130 (482)
                      +++. ---|++++.+|.|.+...|...++.+ ..+=+.-+...|..+-..+.||+++. .+.-.--..-..||.+.+..+
T Consensus       383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~-f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~  461 (632)
T 3l84_A          383 KNIHFGIREHAMAAINNAFARYGIFLPFSAT-FFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLST  461 (632)
T ss_dssp             SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHH
T ss_pred             CeEEeCccHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHH
Confidence            5554 35799999999999998444333332 45556677788887778899999985 333221111235788888999


Q ss_pred             hccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      ++.+...... +.++.++..++..|++     .++||||.+|..-
T Consensus       462 lr~iP~l~V~~P~d~~e~~~~l~~A~~-----~~~Pv~ir~~r~~  501 (632)
T 3l84_A          462 FRAMPNFLTFRPADGVENVKAWQIALN-----ADIPSAFVLSRQK  501 (632)
T ss_dssp             HHHSSSCEEECCSSHHHHHHHHHHHHH-----CSSCEEEECCSSC
T ss_pred             HhcCCCCEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEcCCC
Confidence            9999876554 4455666666666654     3599999999743

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=94.66  E-value=0.011  Score=65.37  Aligned_cols=48  Identities=15%  Similarity=0.063  Sum_probs=41.6

Q ss_pred             CCcccchHHHHHHHhhhCCCC---------cEEEEEcchhc--cCChHH-HHHHHHcCcc
Q 011590          431 WGTMGVGLGYCIAAAIACPER---------LVVAVEGDSGF--GFSAVE-VEVWLSCIIM  478 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~p~~---------~vi~~~GDGsf--~~~~~e-L~T~~r~~l~  478 (482)
                      -+.+|.++|.|+|+++|.+.+         .||++.|||+|  +....| |-++..+++|
T Consensus       320 ~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp  379 (933)
T 2jgd_A          320 PSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYE  379 (933)
T ss_dssp             CSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTC
T ss_pred             CcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCC
Confidence            367899999999999996443         79999999998  888888 8888889999

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=94.64  E-value=0.16  Score=54.33  Aligned_cols=115  Identities=16%  Similarity=0.080  Sum_probs=78.0

Q ss_pred             CcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeC-CCCcccCC-C-CCCCCcCH
Q 011590           52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG-SCDQKDFG-R-GDFQELDQ  127 (482)
Q Consensus        52 i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g-~~~~~~~~-~-~~~q~~d~  127 (482)
                      -+++. .-.|++++.+|.|++...|...++. +..+-..-+..+|..+-..+.|++++.. +...  .| . ..||.+.+
T Consensus       402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g--~G~dG~tHq~~ed  478 (673)
T 1r9j_A          402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGG-TFLNFIGYALGAVRLAAISHHRVIYVATHDSIG--VGEDGPTHQPVEL  478 (673)
T ss_dssp             CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSH
T ss_pred             CCeEecCccHHHHHHHHHHHHhcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEECCccC--cCCCCcccCCHHH
Confidence            45664 4789999999999998754433333 3555556677888888889999998862 2212  23 2 34788888


Q ss_pred             hhhhcccccee-eecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          128 VEAVKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       128 ~~~~~~~~k~~-~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ..+++.+-... ..+.++.++..++..|+    ..+.+|++|.+|..
T Consensus       479 la~lr~iP~l~V~~Pad~~e~~~~l~~a~----~~~~~Pv~i~~~r~  521 (673)
T 1r9j_A          479 VAALRAMPNLQVIRPSDQTETSGAWAVAL----SSIHTPTVLCLSRQ  521 (673)
T ss_dssp             HHHHHHSTTCEEECCSSHHHHHHHHHHHH----HCTTCCEEEECCSS
T ss_pred             HHHHcCCCCCEEEeCCCHHHHHHHHHHHH----HhCCCeEEEEEcCC
Confidence            99999876643 33445556555555555    44359999999975

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=94.56  E-value=0.15  Score=54.63  Aligned_cols=114  Identities=12%  Similarity=0.119  Sum_probs=77.6

Q ss_pred             CcEEe-cCchHHHHHHHHHHHhHhC-C-cEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeC-CCCcccCC-C-CCCCCc
Q 011590           52 VRFIA-FHNEQSAGYAASAYGYLTG-K-PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG-SCDQKDFG-R-GDFQEL  125 (482)
Q Consensus        52 i~~v~-~~~E~~A~~~A~g~ar~tg-k-~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g-~~~~~~~~-~-~~~q~~  125 (482)
                      -+++. .-.|++++.+|.|.+...| | |-+  .+..+-..-+..+|..+-..+.||+++.. +...  .| . ..||.+
T Consensus       409 ~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~--~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g--~G~dG~tHq~~  484 (680)
T 1gpu_A          409 GRYIRYGIREHAMGAIMNGISAFGANYKPYG--GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG--VGEDGPTHQPI  484 (680)
T ss_dssp             CCEEECCSCHHHHHHHHHHHHHHCTTCEEEE--EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCS
T ss_pred             CceecCCccHHHHHHHHHHHHhcCCCceEEE--eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCccCCH
Confidence            34554 4679999999999998864 4 444  35556556677888888888999999862 2222  23 2 347888


Q ss_pred             CHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          126 DQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       126 d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .++.+++.+-..... +.++.++..++..|+    ...++||+|.+|..
T Consensus       485 edla~lr~iP~l~V~~Pad~~e~~~~l~~A~----~~~~~Pv~i~~~r~  529 (680)
T 1gpu_A          485 ETLAHFRSLPNIQVWRPADGNEVSAAYKNSL----ESKHTPSIIALSRQ  529 (680)
T ss_dssp             SHHHHHHTSSSCEEECCCSHHHHHHHHHHHH----HCSSCCEEEECCSS
T ss_pred             HHHHHhcCCCCCEEEecCCHHHHHHHHHHHH----HhCCCcEEEEecCC
Confidence            889999988664433 344555555555444    44359999999974

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=94.53  E-value=0.009  Score=67.22  Aligned_cols=48  Identities=13%  Similarity=-0.059  Sum_probs=42.0

Q ss_pred             CCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhc--cCChHH-HHHHHHcCcc
Q 011590          431 WGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGF--GFSAVE-VEVWLSCIIM  478 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf--~~~~~e-L~T~~r~~l~  478 (482)
                      .+.||.++|.|+|+++|.+              +..++++.|||+|  +...+| |.++..+++|
T Consensus       489 ~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp  553 (1113)
T 2xt6_A          489 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR  553 (1113)
T ss_dssp             CSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTC
T ss_pred             CccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCC
Confidence            4679999999999999853              3579999999998  889999 8888899998

>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*

Probab=94.44  E-value=0.042  Score=53.30  Aligned_cols=71  Identities=15%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      +...+++||++|+||+++..+.-.+.+.. ...+.+++.||.++...+ ...++.+.+++.++|.+|.+.|.-
T Consensus       200 A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d-~~adl~i~g~a~evl~~L~~~Lg~  271 (355)
T 3pki_A          200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD-RHADLRIHGYVDEVMTRLMEHLGL  271 (355)
T ss_dssp             HHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTG-GGCSEEECSCHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC-CccCEEEeCCHHHHHHHHHHHhCC
Confidence            34567899999999999976543332211 124678999999876543 235789999999999999998763

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=94.28  E-value=0.17  Score=54.09  Aligned_cols=115  Identities=10%  Similarity=0.031  Sum_probs=77.8

Q ss_pred             CcEEe-cCchHHHHHHHHHHHhHh--CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC-C-CCCCCcC
Q 011590           52 VRFIA-FHNEQSAGYAASAYGYLT--GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELD  126 (482)
Q Consensus        52 i~~v~-~~~E~~A~~~A~g~ar~t--gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~d  126 (482)
                      -+++. --.|++++.+|.|++...  -||-+.  +..+...-+..+|..+-..+.||+++....... .| . ..||.+.
T Consensus       414 ~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~--t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~tHq~~e  490 (675)
T 1itz_A          414 ERNVRFGVREHGMGAICNGIALHSPGFVPYCA--TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG-LGEDGPTHQPIE  490 (675)
T ss_dssp             CCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEE--EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSS
T ss_pred             CCeEeecccHHHHHHHHHHHHhcCCCCEEEEE--EHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCCCCcCcHH
Confidence            34554 348999999999999875  344333  356777777888988889999999987211111 23 2 3578888


Q ss_pred             Hhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          127 QVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       127 ~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      ++.+++.+-.... .+.++.++..++..|+    ....+||+|.+|..
T Consensus       491 dla~lr~iP~l~V~~Pad~~e~~~~l~~a~----~~~~~Pv~i~~~r~  534 (675)
T 1itz_A          491 HLVSFRAMPNILMLRPADGNETAGAYKVAV----LNRKRPSILALSRQ  534 (675)
T ss_dssp             HHHHHHSSSSCEEECCCSHHHHHHHHHHHH----HCTTSCEEEEECSS
T ss_pred             HHHHhccCCCeEEEECCCHHHHHHHHHHHH----HhCCCcEEEEecCC
Confidence            8999998766443 3445555555555554    44359999999974

>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*

Probab=94.03  E-value=0.024  Score=52.76  Aligned_cols=69  Identities=14%  Similarity=0.056  Sum_probs=49.4

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ...+++||++|+||+++..+...+.+... ..++++|.||.++..... ..++.+.+|+.++|++|.+.+.
T Consensus       175 ~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~-~~~~~i~~~~~~~l~~l~~~lg  244 (246)
T 1yc5_A          175 IGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD-IATLKYNMDVVEFARRVMEEGG  244 (246)
T ss_dssp             HHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG-GCSEEECSCHHHHHHHHHHHHT
T ss_pred             HHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCc-ceeEEEeCCHHHHHHHHHHHcC
Confidence            45678999999999987654322111001 236889999998876532 2488999999999999988764

>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*

Probab=93.90  E-value=0.028  Score=52.48  Aligned_cols=71  Identities=23%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ....+++||++|+||+++..+...+.+... ..++++|.||.++..... ..++.+.+|+.++|++|.+.++.
T Consensus       177 a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~-~~~~~i~~~~~~~l~~l~~~l~~  248 (253)
T 1ma3_A          177 AIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP-IFDVKIIGKAGEVLPKIVEEVKR  248 (253)
T ss_dssp             HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG-GCSEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCC-ceeEEEeCCHHHHHHHHHHHHHH
Confidence            345678999999999987654322111001 236789999998876532 34889999999999999887653

>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}

Probab=93.89  E-value=0.042  Score=52.68  Aligned_cols=71  Identities=17%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      +...+++||++|++|+++..+.-.+.+.. ...+.+++.||.++...+ ...++.+.+++.++|.+|.+.+.-
T Consensus       200 a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d-~~adl~i~g~~~evl~~L~~~Lg~  271 (318)
T 3k35_A          200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD-RHADLRIHGYVDEVMTRLMKHLGL  271 (318)
T ss_dssp             HHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTG-GGCSEEECSCHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC-CcccEEEeCCHHHHHHHHHHHhCC
Confidence            34577899999999999976543221100 124678999999875543 235889999999999999998863

>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*

Probab=93.67  E-value=0.036  Score=51.61  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=49.1

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ...+++||++|++|+++..+...+.+... ..++++|.||.++..... ..++.+.+|+.++|++|.+.+.
T Consensus       172 ~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~-~~~~~i~~~~~~~l~~l~~~l~  241 (249)
T 1m2k_A          172 MREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP-IADYSLRGKAGEVMDELVRHVR  241 (249)
T ss_dssp             HHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG-GCSEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCc-ceeEEEeCCHHHHHHHHHHHHH
Confidence            35678899999999987654322111001 247889999998876532 3478999999999999987764

>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*

Probab=93.33  E-value=0.049  Score=51.41  Aligned_cols=65  Identities=15%  Similarity=0.145  Sum_probs=47.6

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHH
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMIN  337 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~  337 (482)
                      ...+++||++|+||+++..+.-.+.... ...+++++.||.++..... ..++.+.+++.++|.+|+
T Consensus       207 ~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~-~~~~~i~g~~~~~l~~l~  272 (273)
T 3riy_A          207 DRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN-RFRFHFQGPCGTTLPEAL  272 (273)
T ss_dssp             HHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG-GSSEEEESCHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc-ceeEEEeCCHHHHHHHHh
Confidence            3567899999999999976443222111 1357899999998866542 457889999999999875

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=93.04  E-value=0.39  Score=51.28  Aligned_cols=114  Identities=14%  Similarity=0.019  Sum_probs=75.1

Q ss_pred             cEEe-cCchHHHHHHHHHHHhHhC-CcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHh
Q 011590           53 RFIA-FHNEQSAGYAASAYGYLTG-KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQV  128 (482)
Q Consensus        53 ~~v~-~~~E~~A~~~A~g~ar~tg-k~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~  128 (482)
                      +++. ---|++++.+|.|.|...| ||-+.  |..+-..=+..+|..+-..+.||+++....... .|  -..||.+.+.
T Consensus       428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~--tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~ied~  504 (690)
T 3m49_A          428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG--TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPIEQL  504 (690)
T ss_dssp             CEEECCSCHHHHHHHHHHHHHHSSCEEEEE--EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCSSHH
T ss_pred             ceEEcCchHHHHHHHHHHHHHcCCCEEEEE--ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCHHHH
Confidence            5554 3579999999999999844 44443  223322334556777777899999997432221 23  2347888889


Q ss_pred             hhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          129 EAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       129 ~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+++.+-...... .++.++    ..+++.|.....+||+|.+|..
T Consensus       505 a~lr~iPnl~V~~Pad~~E~----~~~l~~Ai~~~~~Pv~ir~~R~  546 (690)
T 3m49_A          505 AALRAMPNVSVIRPADGNES----VAAWRLALESTNKPTALVLTRQ  546 (690)
T ss_dssp             HHHHTSTTCEEECCSSHHHH----HHHHHHHHHCSSSCEEEECCSS
T ss_pred             HHHhcCCCCEEEeeCCHHHH----HHHHHHHHHcCCCCEEEEeecc
Confidence            9999998766443 344444    4555555555469999999974

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=92.95  E-value=0.46  Score=50.93  Aligned_cols=115  Identities=12%  Similarity=0.035  Sum_probs=77.3

Q ss_pred             CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHh
Q 011590           52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQV  128 (482)
Q Consensus        52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~  128 (482)
                      =+++.+ --|++++.+|.|.+...|...++.+ ..+=+.-+...|..+-..+.||+++....... .|  -..||.+.+.
T Consensus       448 ~R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~~ed~  525 (711)
T 3uk1_A          448 GNHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQSVEHV  525 (711)
T ss_dssp             CSEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHH
T ss_pred             CcEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCChhHH
Confidence            356643 6799999999999986455444433 33333445567777667899999886322111 22  2357888889


Q ss_pred             hhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          129 EAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       129 ~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+++.+-..... +.++.++..++..|++     .++||||.+|..
T Consensus       526 a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-----~~~Pv~ir~~r~  566 (711)
T 3uk1_A          526 ASLRLIPNLDVWRPADTVETAVAWTYAVA-----HQHPSCLIFSRQ  566 (711)
T ss_dssp             HHHHTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEECCSS
T ss_pred             HHHhcCCCCEEEecCCHHHHHHHHHHHHh-----cCCCEEEEeeCC
Confidence            999999876554 4566677666666665     359999999864

>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*

Probab=92.39  E-value=0.038  Score=52.57  Aligned_cols=69  Identities=17%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ...+++||++|+||+++..+...+.+... ..+++++.||.++........++.+.+|+.++++ |.+.++
T Consensus       211 ~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d~~i~g~a~~vl~-~~~~l~  280 (290)
T 3u31_A          211 EEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTK-VANILK  280 (290)
T ss_dssp             HHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTTTCSEEEESCGGGHHH-HHHHHH
T ss_pred             HHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCccceEEEECCHHHHHH-HHHHHh
Confidence            35678999999999998754322211111 2568899999988766433458899999998775 555554

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=92.35  E-value=0.78  Score=49.03  Aligned_cols=116  Identities=13%  Similarity=0.029  Sum_probs=76.2

Q ss_pred             cEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeC-CCCcccCCCCCCCCcCHhhh
Q 011590           53 RFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG-SCDQKDFGRGDFQELDQVEA  130 (482)
Q Consensus        53 ~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g-~~~~~~~~~~~~q~~d~~~~  130 (482)
                      +++.+ --|++++.+|.|.+...|...++- |..+=+.-+...|..+-..+.||+++.. +.-.--..-..||.+.++.+
T Consensus       433 R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~  511 (700)
T 3rim_A          433 RTLHFGVREHAMGAILSGIVLHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSA  511 (700)
T ss_dssp             CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHH
T ss_pred             ceeecCccHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHH
Confidence            66643 679999999999999845433333 3333233456678777888999999863 22111112245788899999


Q ss_pred             hccccceeeec-CCcCcHHHHHHHHHHHhhcCCC--ceEEEEcCcc
Q 011590          131 VKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP--GGCYLDLPTD  173 (482)
Q Consensus       131 ~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~--gPv~l~iP~d  173 (482)
                      ++.+-...... .++.++    ..+++.|+..+.  |||+|.+|..
T Consensus       512 lr~iPnl~V~~Pad~~e~----~~~l~~Ai~~~~~~~Pv~ir~~r~  553 (700)
T 3rim_A          512 LRAIPRLSVVRPADANET----AYAWRTILARRNGSGPVGLILTRQ  553 (700)
T ss_dssp             HHTSTTCEEECCSSHHHH----HHHHHHHHTTTTCSSCEEEECCSS
T ss_pred             HhcCCCCEEEeCCCHHHH----HHHHHHHHHccCCCCCEEEEeccc
Confidence            99988755443 344444    455555556554  7999999874

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=92.27  E-value=0.29  Score=51.06  Aligned_cols=118  Identities=15%  Similarity=0.120  Sum_probs=74.5

Q ss_pred             CCcEEecCchH---HHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CC--------
Q 011590           51 GVRFIAFHNEQ---SAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FG--------  118 (482)
Q Consensus        51 ~i~~v~~~~E~---~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~--------  118 (482)
                      +.+++..+--.   +..-+|.|.+.+.+|+.+|++--| ++.-.+..|..|...+.|+++|.-+-.... .+        
T Consensus       406 ~~~~~~~~g~~g~~G~l~~A~Gaa~a~~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~  484 (556)
T 3hww_A          406 GYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDL-SALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSE  484 (556)
T ss_dssp             TCCEEECCSSCCSSSHHHHHHHHHHHHCCCEEEEEEHH-HHHHTGGGHHHHTTCSSCEEEEEEESCC-------------
T ss_pred             CceEEecCcccccccHHHHHHHHHhcCCCcEEEEEccH-HhhhcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcchh
Confidence            45566543221   114567888888888888877555 344456789899999999988876543210 00        


Q ss_pred             C----CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          119 R----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       119 ~----~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .    ...+..|...+.+.+.-...++++++++    ++|++.+... .||+.|++..|-
T Consensus       485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l----~~al~~a~~~-~gp~liev~~~~  539 (556)
T 3hww_A          485 RERFYLMPQNVHFEHAAAMFELKYHRPQNWQEL----ETAFADAWRT-PTTTVIEMVVND  539 (556)
T ss_dssp             ----CCCCCCCCSHHHHHHTTCEEECCSSHHHH----HHHHHHHTTS-SSEEEEEEECCS
T ss_pred             HHHhccCCCCCCHHHHHHHcCCcEEecCCHHHH----HHHHHHHHhC-CCCEEEEEECCc
Confidence            0    1123456667777776666777776554    5555566564 499999998764

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=91.39  E-value=0.11  Score=56.25  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             CCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590          431 WGTMGVGLGYCIAAAIACPERLVVAVEGDSG  461 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDGs  461 (482)
                      .|+||+|++.|+|+++.+|+..|++++|||.
T Consensus       174 tG~LGqGls~AvG~A~~~~~~~v~~~~GDGe  204 (845)
T 3ahc_A          174 GGELGYALSHAYGAVMNNPSLFVPCIIGDGE  204 (845)
T ss_dssp             CSSTTCHHHHHHHHHTTCTTCEEEEEEETTG
T ss_pred             CCCccchHhHHhhhhhcCCCCeEEEEECCCc
Confidence            6999999999999999999999999999999

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=91.21  E-value=0.58  Score=48.73  Aligned_cols=108  Identities=8%  Similarity=0.066  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C-------CC----CCCCCcCHhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F-------GR----GDFQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~-------~~----~~~q~~d~~~  129 (482)
                      +.-+|.|.+.+. +|+.+|++--|. +.-.+..|.+|...+.|+++|.-+-.... .       +.    ..++..|...
T Consensus       411 ~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~  489 (549)
T 3eya_A          411 AMPQALGAQATEPERQVVAMCGDGG-FSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFAR  489 (549)
T ss_dssp             HHHHHHHHHHHSTTSCEEEEEEHHH-HHHTGGGHHHHHHTTCCCEEEEEECSBCCCC------------CCBCCCCCHHH
T ss_pred             HHHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCCcCCcCCCCCHHH
Confidence            556678888875 677777775553 44447789999999999887765443211 0       00    1123457777


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      +++.+.-...++++++++.+.+++|++    . .||+.|++..|-.+
T Consensus       490 ~a~a~G~~~~~v~~~~~l~~al~~a~~----~-~gp~liev~~~~~~  531 (549)
T 3eya_A          490 IAEACGITGIRVEKASEVDEALQRAFS----I-DGPVLVDVVVAKEE  531 (549)
T ss_dssp             HHHHTTSEEEEECSGGGHHHHHHHHHH----S-SSCEEEEEEBCCCC
T ss_pred             HHHHcCCcEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEecccc
Confidence            777776667788888888777666654    3 48999999877543

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=90.89  E-value=0.62  Score=45.80  Aligned_cols=113  Identities=14%  Similarity=0.084  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhccc
Q 011590           63 AGYAASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPF  134 (482)
Q Consensus        63 A~~~A~g~ar~t---gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~  134 (482)
                      ..-+|.|.+++.   +.-.++++..|=|..+.   .-++..|...+.|+|+|.-+........  ......|....++.+
T Consensus       147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~  226 (368)
T 1w85_A          147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAA  226 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGT
T ss_pred             cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHC
Confidence            444566777653   22233444446666663   2367788899999999986543211110  011123445556665


Q ss_pred             cceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          135 SKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       135 ~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      .-...+++  +++++.+.+++|+..+..+. ||+.|++-.+-..
T Consensus       227 G~~~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~r~~  269 (368)
T 1w85_A          227 GIPGIQVDGMDPLAVYAAVKAARERAINGE-GPTLIETLCFRYG  269 (368)
T ss_dssp             TCCEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECCCSS
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEeeccC
Confidence            44445564  57788888888888887765 8999998665443

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=90.17  E-value=0.7  Score=48.58  Aligned_cols=110  Identities=10%  Similarity=0.071  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C---------CC-C-CCCCcCHhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F---------GR-G-DFQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~---------~~-~-~~q~~d~~~  129 (482)
                      +.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|++++.-+-.... .         .+ + .++..|...
T Consensus       418 ~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~  496 (590)
T 1v5e_A          418 AIPGGLGAKNTYPDRQVWNIIGDGA-FSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAK  496 (590)
T ss_dssp             HHHHHHHHHHHCTTSCEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHH
T ss_pred             hHHHHHHHHHhCCCCeEEEEEechH-HhchHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCCccccCCCCCHHH
Confidence            445677777764 567777775553 44446889999999999888875432111 0         00 0 023457777


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      +++.+.-...++++++++.+.+++|+..+..  .||+.|++..|-.
T Consensus       497 ~a~a~G~~~~~v~~~~el~~al~~a~~~~~~--~gp~liev~~~~~  540 (590)
T 1v5e_A          497 IAEAQGAKGFTVSRIEDMDRVMAEAVAANKA--GHTVVIDCKITQD  540 (590)
T ss_dssp             HHHHTTSEEEEECBHHHHHHHHHHHHHHHHT--TCCEEEEEECCSC
T ss_pred             HHHHcCCEEEEECCHHHHHHHHHHHHHhcCC--CCCEEEEEEeccc
Confidence            8888766677888888887777777765443  4899999887643

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=89.73  E-value=0.72  Score=48.20  Aligned_cols=106  Identities=14%  Similarity=0.061  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcc--cCCC----CC-----CCCcCHhhhh
Q 011590           63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGR----GD-----FQELDQVEAV  131 (482)
Q Consensus        63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~--~~~~----~~-----~q~~d~~~~~  131 (482)
                      +.-+|.|.+.+.+|+.++++--|. +.-.+..|..|...+.|+++|.-+-...  ....    +.     .+..|...++
T Consensus       431 ~l~~AiGaala~~~~vv~i~GDGs-f~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a  509 (568)
T 2c31_A          431 GMGYCVAAAAVTGKPVIAVEGDSA-FGFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMM  509 (568)
T ss_dssp             HHHHHHHHHHHHCSCEEEEEEHHH-HHTTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHH
T ss_pred             cHHHHHHHHhCCCCcEEEEEcchH-hhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHHH
Confidence            355677777777888887775443 3333678889999999999888655431  1100    00     2335777778


Q ss_pred             ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +.+.-...++++++++.+.+++|+.    . .||+.|++..|-
T Consensus       510 ~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~~~~  547 (568)
T 2c31_A          510 EAFGGKGYVANTPAELKAALEEAVA----S-GKPCLINAMIDP  547 (568)
T ss_dssp             HTTTCEEEEESSHHHHHHHHHHHHH----H-TSCEEEEEEBCT
T ss_pred             HHcCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEecc
Confidence            8876667788887777666666653    2 489999998774

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=88.00  E-value=0.58  Score=46.68  Aligned_cols=106  Identities=13%  Similarity=0.032  Sum_probs=63.1

Q ss_pred             HHHHHHHhHh-----CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCC--CCC-CCcCHhhhhcc
Q 011590           65 YAASAYGYLT-----GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDF-QELDQVEAVKP  133 (482)
Q Consensus        65 ~~A~g~ar~t-----gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~-q~~d~~~~~~~  133 (482)
                      -+|.|.+++.     ++..+|++  |=|.++.   .-++..|...++|+|+|.-+........  ... ...|....++.
T Consensus       188 p~AvGaA~A~k~~~~~~~vv~i~--GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a  265 (407)
T 1qs0_A          188 VQAVGWAMASAIKGDTKIASAWI--GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVG  265 (407)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEEE--ETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHH
T ss_pred             hHHHHHHHHHHHhCCCCEEEEEE--CCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHH
Confidence            3456666543     44444444  5566653   4578888889999998885442111100  001 11233344555


Q ss_pred             ccceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          134 FSKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       134 ~~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      +.-...+++  +++++.+.+.+|+..+..+. ||+.|++-.+
T Consensus       266 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~  306 (407)
T 1qs0_A          266 CGIASLRVDGNDFVAVYAASRWAAERARRGL-GPSLIEWVTY  306 (407)
T ss_dssp             TTCEEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECC
T ss_pred             cCCeEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence            444445554  45678888888888887765 8999998654

>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}

Probab=87.79  E-value=2.6  Score=39.79  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             HHHHHHHhCCcEeeCC--CCCCCCCCCCCcccc--hHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCc
Q 011590          238 LKKLVESTGIPFLPTP--MGKGLLPDTHPLAAT--AARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCK  313 (482)
Q Consensus       238 l~~lae~~g~pv~~t~--~~~g~~~~~hp~~~G--~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~  313 (482)
                      +..=|-+.++|++-..  .-.|=+|+.+.--.-  ..-...++++|+||.+.+-+-...+..   ..+...+++.||++|
T Consensus       230 Imy~cvk~~VPfVLAGSIRDDGPLPdvitdv~~AQ~~mr~~~~~a~~vimlaTmLHSIAtGN---m~Ps~v~~~cVDInp  306 (345)
T 3c2q_A          230 IMYQCIKNNIPYVLAGSIRDDGPIPDVITDSMVAQDKMRTTVMDKKMVIMLSTLLHSVATGN---LMPSYIKTVCVDIQP  306 (345)
T ss_dssp             HHHHHHHTTCCEEEECCTTCSSCCTTCBCBHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHT---TCCTTSEEEEEESCH
T ss_pred             hHHHHHhCCCCEEEEeeccCCCCCCcccccHHHHHHHHHHHhccCCchHHHHHHHHHHHhcc---cCcccceEEEEECCH
Confidence            3344556777766322  223444443221110  123457889999999999887655433   235567899999999


Q ss_pred             hhhcc----cC-CceeEeccHHHHHHHHHHhhhc
Q 011590          314 EEIEL----RK-PHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       314 ~~~~~----~~-~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ....+    .. ..+.++.|+..||..|.+.|.+
T Consensus       307 ~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~~  340 (345)
T 3c2q_A          307 STVTKLMDRGTSQAIGVVTDVGVFLVLLLKELER  340 (345)
T ss_dssp             HHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhccCceeEEEEEecHHHHHHHHHHHHHH
Confidence            86642    22 3688999999999999888753

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=87.45  E-value=1.3  Score=46.10  Aligned_cols=106  Identities=8%  Similarity=0.054  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcc--cCC-----CCC------CCCcCHhh
Q 011590           63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFG-----RGD------FQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~--~~~-----~~~------~q~~d~~~  129 (482)
                      +.-+|.|.+.+.+|+.+|++--|. +.-.+..|..|...+.|+++|.-+-...  ...     .+.      ....|...
T Consensus       426 ~l~~AiGaa~a~~~~vv~i~GDGs-f~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  504 (564)
T 2q28_A          426 GMGYAIGASVTSGSPVVAIEGDSA-FGFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDK  504 (564)
T ss_dssp             HHHHHHHHHHHHCSCEEEEEEHHH-HHTTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGGG
T ss_pred             hHHHHHHHhhcCCCcEEEEEcchH-hhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCccccccCCCCCHHH
Confidence            556677777777888888775543 3233578888999999998887655431  111     010      11346667


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +++.+.-...++++++++.+.+++|+    .. .||+.|++..|-
T Consensus       505 ~a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~~~~  544 (564)
T 2q28_A          505 LMDAFRGVGYNVTTTDELRHALTTGI----QS-RKPTIINVVIDP  544 (564)
T ss_dssp             GGGGGTCEEEEECSHHHHHHHHHHHH----HH-TSCEEEEEEBCT
T ss_pred             HHHHcCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEecc
Confidence            77777666778887777766666665    32 389999988773

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=87.38  E-value=0.71  Score=48.47  Aligned_cols=149  Identities=11%  Similarity=0.147  Sum_probs=89.5

Q ss_pred             HHHHHHhc-CCCEEEec-CCcChHHHHHHHH-hCCCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 011590           20 AAKSLSLF-GATHMFGV-VGIPVTSLANRAV-QLGVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        20 l~~~L~~~-Gv~~vFgv-pG~~~~~l~~al~-~~~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~   92 (482)
                      +++.|.+. .=+.++.. .|.........+. ....+++..+.   =..+.-+|.|.+.+. +++.+|++--|. +...+
T Consensus       380 ~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~-~~~~~  458 (589)
T 2pgn_A          380 AMAEVRKVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGA-LYYHF  458 (589)
T ss_dssp             HHHHHHHTCCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHH-HHHHG
T ss_pred             HHHHHHHhCCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHH-HHhhH
Confidence            34444443 32334333 3443344444332 23345654321   122556678888765 477777775554 44446


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCccc-C--------CC---CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKD-F--------GR---GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS  160 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~---~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~  160 (482)
                      .+|..|...+.|+++|.-+-.... .        +.   ..+...|...+++.+.-...++++++++.+.+++|+.    
T Consensus       459 ~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~----  534 (589)
T 2pgn_A          459 NEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRETGDIAGALQRAID----  534 (589)
T ss_dssp             GGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHH----
T ss_pred             HHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----
Confidence            899999999999888876553211 0        00   1233457777778776667788999998888887764    


Q ss_pred             CCCceEEEEcCcch
Q 011590          161 GRPGGCYLDLPTDV  174 (482)
Q Consensus       161 ~~~gPv~l~iP~dv  174 (482)
                      . .||+.|++..|-
T Consensus       535 ~-~gp~liev~~~~  547 (589)
T 2pgn_A          535 S-GKPALIEIPVSK  547 (589)
T ss_dssp             H-CSCEEEEEECCS
T ss_pred             C-CCCEEEEEEecC
Confidence            2 489999988763

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=86.89  E-value=0.63  Score=48.79  Aligned_cols=104  Identities=18%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             HHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CC-----C--C-------CCCCcCHh
Q 011590           64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FG-----R--G-------DFQELDQV  128 (482)
Q Consensus        64 ~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~-----~--~-------~~q~~d~~  128 (482)
                      .-+|.|.+. .+|+.+|++--| ++.-.+..|..|...+.|+++|.-+-.... .+     .  .       ..+..|..
T Consensus       442 l~~AiGaa~-~~~~vv~i~GDG-sf~~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~  519 (578)
T 3lq1_A          442 VSSALGASV-VFQPMFLLIGDL-SFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFR  519 (578)
T ss_dssp             HHHHHHHTT-TSSSEEEEEEHH-HHHHTGGGGHHHHHTTCCEEEEEECCC-------------------------CCCTH
T ss_pred             HHHHHHHhc-CCCCEEEEEchH-HHHhhHHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCHH
Confidence            456778874 478888777544 233336788889999999998876543211 00     0  0       01234666


Q ss_pred             hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.+.-...++++++++    ++|++.+... .||+.|++..|-
T Consensus       520 ~~a~a~G~~~~~v~~~~el----~~al~~a~~~-~gp~liev~~~~  560 (578)
T 3lq1_A          520 FAAAFYDADYHEAKSVDEL----EEAIDKASYH-KGLDIIEVKTNR  560 (578)
T ss_dssp             HHHHHTTCEEEECCSHHHH----HHHHHHHTTS-SSEEEEEEC---
T ss_pred             HHHHHcCCceEecCCHHHH----HHHHHHHHhC-CCCEEEEEECCc
Confidence            6777776666788776665    4555555554 499999998775

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=86.78  E-value=1.2  Score=46.41  Aligned_cols=106  Identities=9%  Similarity=0.072  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC----------C-C-CCCCCcCHhh
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF----------G-R-GDFQELDQVE  129 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~----------~-~-~~~q~~d~~~  129 (482)
                      +.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|+++|.-+-.....          + . ..++..|...
T Consensus       425 ~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  503 (566)
T 1ozh_A          425 ALPWAIGAWLVNPERKVVSVSGDGG-FLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKA  503 (566)
T ss_dssp             HHHHHHHHHHHSTTSEEEEEEEHHH-HHHHTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHH
T ss_pred             hHHHHHHHHHhCCCCCEEEEEcChH-HhccHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCCccCcCCCCCHHH
Confidence            445677877765 467777665443 344467899999999998888865532210          0 0 1234467778


Q ss_pred             hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +++.+.-...++++++++.+.+++|+.    . .||+.|++..+-
T Consensus       504 ~a~a~G~~~~~v~~~~el~~al~~a~~----~-~gp~liev~~~~  543 (566)
T 1ozh_A          504 YAESFGAKGFAVESAEALEPTLRAAMD----V-DGPAVVAIPVDY  543 (566)
T ss_dssp             HHHTTTSEEEECCSGGGHHHHHHHHHH----S-SSCEEEEEEBCC
T ss_pred             HHHHcCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence            888886667788888888777776663    3 489999988763

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=86.25  E-value=1.7  Score=45.82  Aligned_cols=110  Identities=9%  Similarity=-0.053  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC--------CCCC-
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR--------GDFQ-  123 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~--------~~~q-  123 (482)
                      +.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|+++|.-+-....         .+.        ...+ 
T Consensus       447 ~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (616)
T 2pan_A          447 TIPAALGVCAADPKRNVVAISGDFD-FQFLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSS  525 (616)
T ss_dssp             HHHHHHHHHHHCTTCEEEEEEEHHH-HHHTGGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCCTTCG
T ss_pred             hHHHHHHHHHhCCCCcEEEEEcchh-hhCCHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCccccccccccccc
Confidence            667788888875 467777665553 44446799999999999877775443211         010        0011 


Q ss_pred             -----CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          124 -----ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       124 -----~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                           ..|...+++.+.-...++++++++.+.+++|+..+...+ ||+.|++..+-
T Consensus       526 ~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~-gp~lIev~~~~  580 (616)
T 2pan_A          526 EVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYR-VPVVVEVILER  580 (616)
T ss_dssp             GGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHC-SCEEEEEEBCS
T ss_pred             cCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCC-CcEEEEEEecc
Confidence                 256667777776666788899999888888887655433 89999988764

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=86.11  E-value=1.8  Score=45.58  Aligned_cols=157  Identities=11%  Similarity=0.060  Sum_probs=89.2

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCc-ChHHHHHHHH-hCCCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCCh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGI-PVTSLANRAV-QLGVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGP   86 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~-~~~~l~~al~-~~~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~Gp   86 (482)
                      .++-..++-...+..+=+.++....+ +.......+. ..+-+++....   =..+.-+|.|.+.+. +++.+|++--|.
T Consensus       370 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~  449 (603)
T 4feg_A          370 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGG  449 (603)
T ss_dssp             BCCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHH
T ss_pred             CcCHHHHHHHHHHhCCCCCEEEECCchHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHH
Confidence            34444443333444454555555333 2222223232 12345554321   112445677777765 566666664443


Q ss_pred             hhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------CCC-----CCCCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590           87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GRG-----DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQ  153 (482)
Q Consensus        87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~~-----~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~  153 (482)
                       +.-.+.+|..|...+.|+++|.-+-.....        +..     .+...|...+++.+.-...++++++++.+.+++
T Consensus       450 -~~~~~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~  528 (603)
T 4feg_A          450 -ASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQ  528 (603)
T ss_dssp             -HHHHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHH
T ss_pred             -HhhhHHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHH
Confidence             444466788899999999888765532210        011     123457777877776667788888887776666


Q ss_pred             HHHHhhcCCCceEEEEcCcc
Q 011590          154 VLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       154 A~~~a~~~~~gPv~l~iP~d  173 (482)
                      |+..  .. .||++|++..+
T Consensus       529 a~~~--~~-~gP~lIev~~~  545 (603)
T 4feg_A          529 AKAI--AQ-HEPVLIDAVIT  545 (603)
T ss_dssp             HHHH--TT-TSCEEEEEECC
T ss_pred             HHHh--cC-CCcEEEEEEeC
Confidence            6531  43 49999999875

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=85.34  E-value=0.8  Score=44.96  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=59.6

Q ss_pred             HHHHHHHhHh-----CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCC-C--CCCcCHhhhhcc
Q 011590           65 YAASAYGYLT-----GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRG-D--FQELDQVEAVKP  133 (482)
Q Consensus        65 ~~A~g~ar~t-----gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~-~--~q~~d~~~~~~~  133 (482)
                      -.|.|.+++.     +++.+|+  .|=|+++.   .-++..|...+.|+|+|.-+.... .... .  ....|...  +.
T Consensus       147 p~A~G~A~A~~~~~~~~~vv~~--~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g-~~t~~~~~~~~~~~~~--ra  221 (365)
T 2ozl_A          147 PLGAGIALACKYNGKDEVCLTL--YGDGAANQGQIFEAYNMAALWKLPCIFICENNRYG-MGTSVERAAASTDYYK--RG  221 (365)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEE--EETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEEHHHHCSCCCGGG--TT
T ss_pred             HHHHHHHHHHHhcCCCceEEEE--ECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcc-cCCCcccccCCCCHHH--Hh
Confidence            3456666543     3444444  46666663   347888989999999998443111 1000 0  00111111  22


Q ss_pred             ccceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          134 FSKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       134 ~~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      +.--..+++  +++++.+.+++|+..+..++ ||+.|++-.+
T Consensus       222 ~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~  262 (365)
T 2ozl_A          222 DFIPGLRVDGMDILCVREATRFAAAYCRSGK-GPILMELQTY  262 (365)
T ss_dssp             TTSCEEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEEECC
T ss_pred             CCCCEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEee
Confidence            211223444  67888888888988888775 9999998654

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=84.91  E-value=1.7  Score=45.21  Aligned_cols=149  Identities=12%  Similarity=0.081  Sum_probs=85.6

Q ss_pred             HHHHHHHhc-CCCEEEecCCcC-hHHHHHHHHh-CCCcEEecC---chHHHHHHHHHHHhHh---CCcEEEEEcCChhhH
Q 011590           19 LAAKSLSLF-GATHMFGVVGIP-VTSLANRAVQ-LGVRFIAFH---NEQSAGYAASAYGYLT---GKPGILLTVSGPGCV   89 (482)
Q Consensus        19 ~l~~~L~~~-Gv~~vFgvpG~~-~~~l~~al~~-~~i~~v~~~---~E~~A~~~A~g~ar~t---gk~~v~~~t~GpG~~   89 (482)
                      .+++.|.+. .=+.++..-.+. .+.....+.- ..-+++...   .=..+.-+|.|.+.+.   +++.+|++--|. +.
T Consensus       374 ~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~-~~  452 (563)
T 2uz1_A          374 HASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGS-VG  452 (563)
T ss_dssp             HHHHHHHTTCSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHH-HG
T ss_pred             HHHHHHHHhCCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHH-Hh
Confidence            344555443 334444443332 2333443432 234455422   1123445677877764   677777775553 44


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC-C----CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHH
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKD---------FGR-G----DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVL  155 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~-~----~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~  155 (482)
                      -.+.+|..|...+.|+++|.-+-....         .+. .    .++..|...+++.+.-...++++++++.+.+++|+
T Consensus       453 ~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~  532 (563)
T 2uz1_A          453 YSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQAL  532 (563)
T ss_dssp             GGTTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH
Confidence            446799999999999887775443210         011 1    12345777788887666677877766666555554


Q ss_pred             HHhhcCCCceEEEEcCcc
Q 011590          156 ERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       156 ~~a~~~~~gPv~l~iP~d  173 (482)
                          .. .||+.|++..+
T Consensus       533 ----~~-~gp~liev~~~  545 (563)
T 2uz1_A          533 ----AH-NRPACINVAVA  545 (563)
T ss_dssp             ----HS-SSCEEEEEECC
T ss_pred             ----HC-CCCEEEEEEec
Confidence                33 48999999887

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=83.66  E-value=2.6  Score=41.80  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             HHHHHHHhHh-----CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhccc
Q 011590           65 YAASAYGYLT-----GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPF  134 (482)
Q Consensus        65 ~~A~g~ar~t-----gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~  134 (482)
                      -+|.|.+++.     ++..+|++  |=|..+.   .-++..|...++|+|+|.-+......+.  ......|....++.+
T Consensus       169 p~AvG~AlA~~~~~~~~~vv~~~--GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~  246 (400)
T 2bfd_A          169 PQAVGAAYAAKRANANRVVICYF--GEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY  246 (400)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEEE--ETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred             cHHHHHHHhhhhhCCCCeEEEEE--CchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHc
Confidence            3455666543     34455544  5454432   2577788888999999986542221111  011123455556665


Q ss_pred             cceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          135 SKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       135 ~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .-...+++  +++++.+.+.+|+..+.... ||+.|++-..-
T Consensus       247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-~P~lIe~~tyR  287 (400)
T 2bfd_A          247 GIMSIRVDGNDVFAVYNATKEARRRAVAEN-QPFLIEAMTYR  287 (400)
T ss_dssp             TCEEEEEETTCHHHHHHHHHHHHHHHHHHT-CCEEEEEECCC
T ss_pred             CCcEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEeee
Confidence            44444554  56688888888888776654 89999886643

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=83.05  E-value=1.9  Score=44.81  Aligned_cols=106  Identities=13%  Similarity=0.082  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-----CCC----CCCCCcCHhhhhc
Q 011590           63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FGR----GDFQELDQVEAVK  132 (482)
Q Consensus        63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-----~~~----~~~q~~d~~~~~~  132 (482)
                      +.-+|.|.+.+. +++.+|++--|. +.-.+..+..|...+.|++++.-+-....     .+.    ..++..|...+++
T Consensus       413 ~l~~A~G~a~a~~~~~vv~~~GDG~-~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~  491 (552)
T 1ovm_A          413 TLAAAFGAQTACPNRRVIVLTGDGA-AQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQ  491 (552)
T ss_dssp             HHHHHHHHHHHCTTSCEEEEEEHHH-HHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGSTT
T ss_pred             HHHHHHHHHHhCCCCcEEEEECchH-HHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcccCCCCCHHHHHH
Confidence            445577777764 467777665443 33346788889999999888875543211     011    1233457777777


Q ss_pred             cccc----eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          133 PFSK----FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       133 ~~~k----~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.-    ...++++++++    .+|++.+... .||+.|++..+-
T Consensus       492 a~G~~~~~~~~~v~~~~~l----~~al~~a~~~-~gp~liev~~~~  532 (552)
T 1ovm_A          492 ALSLDPQSECWRVSEAEQL----ADVLEKVAHH-ERLSLIEVMLPK  532 (552)
T ss_dssp             TSCSSCCEEEEEECBHHHH----HHHHHHHTTC-SSEEEEEEECCT
T ss_pred             HhCCCcCCCEEEeCCHHHH----HHHHHHHHhC-CCCEEEEEEcCc
Confidence            7754    56677765554    5555555554 489999987763

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=80.64  E-value=2.2  Score=43.93  Aligned_cols=153  Identities=14%  Similarity=0.086  Sum_probs=86.2

Q ss_pred             CcHHHHHHHHHHh-cCCCEEEec-CCcChHHHHHHHH-hCCCcEEecCc--hHHHHHHHHHHHhHh-CCcEEEEEcCChh
Q 011590           14 IDGNTLAAKSLSL-FGATHMFGV-VGIPVTSLANRAV-QLGVRFIAFHN--EQSAGYAASAYGYLT-GKPGILLTVSGPG   87 (482)
Q Consensus        14 ~~~~~~l~~~L~~-~Gv~~vFgv-pG~~~~~l~~al~-~~~i~~v~~~~--E~~A~~~A~g~ar~t-gk~~v~~~t~GpG   87 (482)
                      ++-..+ ++.|.+ ..=+.++.. .|.....+...+. ....+++..+.  =..+.-+|.|.+.+. .|+.+|++--|. 
T Consensus       353 ~~~~~~-~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~~GDG~-  430 (528)
T 1q6z_A          353 LHPETV-FDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGS-  430 (528)
T ss_dssp             BCHHHH-HHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEEEHHH-
T ss_pred             cCHHHH-HHHHHhhCCCCeEEEECCcccHHHHHHhccccCCCcEECCCCccccchHHHHHHHHHhCCCCcEEEEECCcH-
Confidence            444433 444433 343444444 4555444444333 22345665443  112344677877765 466666664442 


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC----CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHH
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQV  154 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~----~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A  154 (482)
                      +.-.+.+|..|...+.|+++|.-+-.....         +.    ..++..|...+++.+.-...++++++++    .+|
T Consensus       431 ~~~~~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l----~~a  506 (528)
T 1q6z_A          431 ANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL----KGS  506 (528)
T ss_dssp             HTTTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHH----HHH
T ss_pred             HHhhHHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHH----HHH
Confidence            334478899998999999988855432110         00    1124467777777776556677776655    555


Q ss_pred             HHHhhcCCCceEEEEcCcc
Q 011590          155 LERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       155 ~~~a~~~~~gPv~l~iP~d  173 (482)
                      ++.+... .||+.|++..|
T Consensus       507 l~~a~~~-~gp~liev~~~  524 (528)
T 1q6z_A          507 LQEALSA-KGPVLIEVSTV  524 (528)
T ss_dssp             HHHHHTC-SSCEEEEEEBC
T ss_pred             HHHHHHC-CCcEEEEEEec
Confidence            5555554 48999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	482
d1t9ba2	175	c.36.1.5 (A:89-263) Acetohydroxyacid synthase cata	5e-27
d1ybha2	195	c.36.1.5 (A:86-280) Acetohydroxyacid synthase cata	1e-26
d2ji7a1	175	c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxa	3e-24
d1q6za1	160	c.31.1.3 (A:182-341) Benzoylformate decarboxylase	4e-21
d2ji7a2	188	c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalo	5e-20
d1ovma1	161	c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxyla	8e-20
d2ihta1	177	c.31.1.3 (A:198-374) Carboxyethylarginine synthase	2e-19
d1ozha2	181	c.36.1.5 (A:7-187) Catabolic acetolactate synthase	3e-19
d1ozha1	179	c.31.1.3 (A:188-366) Catabolic acetolactate syntha	4e-19
d1ytla1	158	c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synth	6e-19
d1zpda1	175	c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymom	1e-16
d1ybha1	179	c.31.1.3 (A:281-459) Acetohydroxyacid synthase cat	5e-16
d1pvda1	179	c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker	9e-16
d2ez9a2	174	c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus	3e-15
d1q6za2	180	c.36.1.5 (A:2-181) Benzoylformate decarboxylase {P	2e-14
d2ihta2	186	c.36.1.5 (A:12-197) Carboxyethylarginine synthase	4e-14
d1pvda2	180	c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's	8e-14
d1t9ba1	171	c.31.1.3 (A:290-460) Acetohydroxyacid synthase cat	1e-13
d2djia2	184	c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus vi	7e-13
d1ovma2	178	c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase	1e-12
d2ez9a1	183	c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacill	2e-12
d1zpda2	186	c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomon	4e-12
d2djia1	177	c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus	1e-11
d2ji7a3	183	c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxa	1e-11
d1zpda3	204	c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymom	6e-06
d1ovma3	196	c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxyla	7e-04

>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (261), Expect = 5e-27
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 1/167 (0%)

Query: 14  IDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-RAVQLGVRFIAFHNEQSAGYAASAYGY 72
           + G  +  + +S      +FG  G  +  + +         F+   +EQ AG+ A  Y  
Sbjct: 4   LTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYAR 63

Query: 73  LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
            +GKPG++L  SGPG  + +  +++   +  P+V+ +G       G   FQE D V   +
Sbjct: 64  ASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISR 123

Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
             +K+ V  K + E+P  + +  E A SGRPG   +DLP DV    +
Sbjct: 124 SCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAIL 170

>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score =  104 bits (259), Expect = 1e-26
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 1/165 (0%)

Query: 16  GNTLAAKSLSLFGATHMFGVVGIPVTSLAN-RAVQLGVRFIAFHNEQSAGYAASAYGYLT 74
           G  +  ++L   G   +F   G     +         +R +   +EQ   +AA  Y   +
Sbjct: 14  GADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSS 73

Query: 75  GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPF 134
           GKPGI +  SGPG  + ++GL++ ++++ P+V I+G   ++  G   FQE   VE  +  
Sbjct: 74  GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSI 133

Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
           +K      D+ ++P+ + +    A SGRPG   +D+P D+  Q  
Sbjct: 134 TKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLA 178

>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 175

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

 Score = 97.0 bits (240), Expect = 3e-24
 Identities = 65/172 (37%), Positives = 97/172 (56%), Gaps = 5/172 (2%)

Query: 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
             I +A  L+K AK+P+I+ GKGAAYA+ + E++ LVE TGIPFLP  M KGLLPD HP 
Sbjct: 7   DAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQ 66

Query: 266 AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR--KPHL 323
           +A A R+ A+ QCDV +++GARLNWL+  G+   W  ++K  +    +            
Sbjct: 67  SAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAA 126

Query: 324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKD 375
            +VGD K  + ++ K +K  P     +  W  A+  K   N  K+  ++  +
Sbjct: 127 PVVGDIKSAVSLLRKALKGAPK---ADAEWTGALKAKVDGNKAKLAGKMTAE 175

>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 160

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

 Score = 88.0 bits (217), Expect = 4e-21
 Identities = 30/145 (20%), Positives = 45/145 (31%), Gaps = 7/145 (4%)

Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
           + D+D  V  L  A  P IV G     A A  +   L E    P    P        T  
Sbjct: 6   DQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRH 65

Query: 265 -------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE 317
                   A  AA S  +   DV LV+GA +     +          + + V     E  
Sbjct: 66  PCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAA 125

Query: 318 LRKPHLGLVGDAKKVLEMINKEIKD 342
                  +V D   +   +   +++
Sbjct: 126 RAPMGDAIVADIGAMASALANLVEE 150

>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

 Score = 85.5 bits (210), Expect = 5e-20
 Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 2/177 (1%)

Query: 14  IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYL 73
            DG  +   +L +     M+GVVGIP+T+LA      G RF +F +EQ AGYAAS  GY+
Sbjct: 4   TDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYI 63

Query: 74  TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG--SCDQKDFGRGDFQELDQVEAV 131
            GKPG+ LTVS PG ++G+  L++   N +P++++SG    +  D  +GD++E+DQ+   
Sbjct: 64  EGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVA 123

Query: 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLL 188
           +P  K + +   I ++P  +A+ +  AVSGRPGG Y+DLP  +  QTISV EA KLL
Sbjct: 124 RPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEANKLL 180

>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 161

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

 Score = 84.0 bits (207), Expect = 8e-20
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 10/159 (6%)

Query: 191 AESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250
           A + K+       + +  D A + L  +K+  ++          +  L+K V+   +   
Sbjct: 2   ALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHA 61

Query: 251 PTPMGKGLLPDTHP--------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK 302
              MGKG+  +            A+T A   AI   D  L VG R    L          
Sbjct: 62  TMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTA-GFTHQLT 120

Query: 303 DVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEI 340
             + + V      + ++    + +    + ++E+  + +
Sbjct: 121 PAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHV 159

>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 177

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 83.1 bits (204), Expect = 2e-19
 Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 198 VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257
           V  G       D+A +LL EAK P++V G  A  + A   ++ L E   IP + T + KG
Sbjct: 1   VADGW--QKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKG 58

Query: 258 LLPDTHPLAA------------TAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
           +LP  H L                A        D+ L VG      L      K  +   
Sbjct: 59  VLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKT 118

Query: 306 FVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKK 360
             +         + +P + +V D    +E              K    +E +  +
Sbjct: 119 VRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGA---KQRHDIEPLRAR 170

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 181

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 83.1 bits (204), Expect = 3e-19
 Identities = 46/169 (27%), Positives = 80/169 (47%)

Query: 14  IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYL 73
             G  L    L   G   +FG+ G  +  + +  +   +R I   +E +A + A+A G +
Sbjct: 5   AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRI 64

Query: 74  TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKP 133
           TGK G+ L  SGPGC + + G++       P+V + G+  + D  +   Q +D V    P
Sbjct: 65  TGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSP 124

Query: 134 FSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVS 182
            +K+A++      + + V+     A  GRPG  ++ LP DV+   +S  
Sbjct: 125 VTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGK 173

>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 179

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 82.7 bits (203), Expect = 4e-19
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 16/168 (9%)

Query: 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 260
           G   +  ID+   L+ +AK P+ + G  A+       L++L+E++ IP   T    G + 
Sbjct: 3   GAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVN 62

Query: 261 DTHP--------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312
             +         L    A    +   D+ + +G               +     V +DV 
Sbjct: 63  QDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWNSGNA---TLVHIDVL 119

Query: 313 KEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK 359
               E    P + LVGD    L  + + I           P    I +
Sbjct: 120 PAYEERNYTPDVELVGDIAGTLNKLAQNIDHRL----VLSPQAAEILR 163

>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 158

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: ACDE2-like
domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 81.6 bits (201), Expect = 6e-19
 Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 22/156 (14%)

Query: 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP------MGKG 257
           +        +++K+AK+PL++ G          E  K      I  + T       +  G
Sbjct: 5   LLEKGKPVANMIKKAKRPLLIVGPDMTDEMF--ERVKKFVEKDITVVATGSAITRFIDAG 62

Query: 258 LLPDTHPLA-------ATAARSLAI---GQCDVALVVGARLNWL-LHFGEPPKWSKDVKF 306
           L    +                      G  D+ L++G+              ++  ++ 
Sbjct: 63  LGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRA 122

Query: 307 VLVDVCKEEIELRKPHLG-LVGDAKKVLEMINKEIK 341
           + +D  +          G L    +  L+++++ + 
Sbjct: 123 LAID--RYYHPNADMSFGNLWKKEEDYLKLLDEILA 156

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 175

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

 Score = 75.7 bits (185), Expect = 1e-16
 Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 19/174 (10%)

Query: 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH 263
           +N+ +D+ +  +    K  ++ G     A AE    K  ++ G         K   P+ +
Sbjct: 8   LNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEEN 67

Query: 264 PL--------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE 315
            L         +       + + D  + +    N               K VL +     
Sbjct: 68  ALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFND-YSTTGWTDIPDPKKLVLAEP--RS 124

Query: 316 IELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKME 369
           + +       V   K  L  + +++        K    ++         + K  
Sbjct: 125 VVVNGIRFPSV-HLKDYLTRLAQKVS-------KKTGSLDFFKSLNAGELKKAA 170

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 179

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 73.9 bits (180), Expect = 5e-16
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 14/167 (8%)

Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
           +S +++ V L+ E+KKP++  G G   +    EL + VE TGIP   T MG G  P    
Sbjct: 6   DSHLEQIVRLISESKKPVLYVGGGCLNSSD--ELGRFVELTGIPVASTLMGLGSYPCDDE 63

Query: 265 L-------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE 317
           L         T   + A+   D+ L  G R +     G+   ++   K V +D+   EI 
Sbjct: 64  LSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDD-RVTGKLEAFASRAKIVHIDIDSAEIG 122

Query: 318 LR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH-PWVEAI--WKK 360
               PH+ + GD K  L+ +NK +++    L  +   W   +   K+
Sbjct: 123 KNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQ 169

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 179

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.0 bits (178), Expect = 9e-16
 Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
              ID  ++L+K+AK P+I+     +    + E KKL++ T  P   TPMGKG + + HP
Sbjct: 17  KEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSISEQHP 76

Query: 265 L--------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI 316
                     +      A+   D+ L VGA L+   + G      K    V       +I
Sbjct: 77  RYGGVYVGTLSKPEVKEAVESADLILSVGALLSD-FNTGSFSYSYKTKNIVEFHSDHMKI 135

Query: 317 -ELRKPHLGLVGDAKKVLEMINKEIKD 342
                P + +    +K+L  I    K 
Sbjct: 136 RNATFPGVQMKFVLQKLLTNIADAAKG 162

>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

 Score = 71.5 bits (174), Expect = 3e-15
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 3/173 (1%)

Query: 13  QIDGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAY 70
            I       K L  +G  H++G+ G  + S+  A  A +  + +I   +E+    AA+A 
Sbjct: 2   NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAAD 61

Query: 71  GYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEA 130
             LTGK G+    +GPG  H + GL +   +  P++ + G           FQE+++   
Sbjct: 62  AKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPI 121

Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
               + + V A +   +P  + + + RA     G   + +P D+  Q I   +
Sbjct: 122 YADVADYNVTAVNAATLPHVIDEAIRRA-YAHQGVAVVQIPVDLPWQQIPAED 173

>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.6 bits (169), Expect = 2e-14
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 2/174 (1%)

Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGIL 80
            + L   G   +FG  G               R+I    E      A  Y   + KP  +
Sbjct: 8   YELLRRQGIDTVFGNPGSNALPFLK-DFPEDFRYILALQEACVVGIADGYAQASRKPAFI 66

Query: 81  LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFAV 139
              S  G  + +  LSN   +  P+++ +G   +   G       +D     +P  K++ 
Sbjct: 67  NLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSY 126

Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAES 193
           +     EVP  +++ +  A     G  YL +P D   +           +   S
Sbjct: 127 EPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSS 180

>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 68.5 bits (166), Expect = 4e-14
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGIL 80
              L   G   +FGVVG    S+    V+ G+ F+   +E +AG AA     +TG+P   
Sbjct: 8   LSRLRDHGVGKVFGVVGREAASILFDEVE-GIDFVLTRHEFTAGVAADVLARITGRPQAC 66

Query: 81  LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEA-VKPFSKFAV 139
               GPG  +   G++  +++  P++ ++   +  D    D  +     A V P SK+AV
Sbjct: 67  WATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAV 126

Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISV 181
           + +   E+   V   +  A++   G  ++ LP D+L  +  +
Sbjct: 127 ELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGI 168

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (164), Expect = 8e-14
 Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 13/185 (7%)

Query: 12  AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
           ++I       + L       +FG+ G    SL ++  ++     A +  +     A+   
Sbjct: 1   SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 60

Query: 72  YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--------RGDFQ 123
                   ++T  G G +  L G++        ++ + G                 G+  
Sbjct: 61  ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGD 120

Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
                      S+      DI   P  + + +           YL LP +++   +    
Sbjct: 121 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTT-YVTQRPVYLGLPANLVDLNVP--- 176

Query: 184 AEKLL 188
             KLL
Sbjct: 177 -AKLL 180

>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 1e-13
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 23/171 (13%)

Query: 209 DKAVSLLKEAKKPLIVFGKGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267
           +KA  L+  AKKP++  G G   +A     LK+L +   IP   T  G G      P + 
Sbjct: 1   NKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSL 60

Query: 268 TAARSLAIGQCDVALVVGARLNWLLHFG---------------EPPKWSKDVKFVLVDVC 312
                      ++A+     +  +                              +  +V 
Sbjct: 61  DMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVS 120

Query: 313 KEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI--WKK 360
            + I ++ +  + + GDA   L  +  +I        +   W   I  WKK
Sbjct: 121 PKNINKVVQTQIAVEGDATTNLGKMMSKIFPVK----ERSEWFAQINKWKK 167

>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

 Score = 65.0 bits (157), Expect = 7e-13
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 11  NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAAS 68
           + +I+      K L  +GA  ++G+    ++SL  A    +  V+F+   +E+    AA 
Sbjct: 1   DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60

Query: 69  AYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQV 128
                 G  G+ +   GPG  H + GL +  ++  P+V I GS  Q++     FQEL+Q 
Sbjct: 61  MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120

Query: 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
                 + +  +     ++PK V +    A++ R G   L++P D     I   +
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQ 174

>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 178

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

 Score = 63.8 bits (154), Expect = 1e-12
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 12/169 (7%)

Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
              L+  GA H+FGV G       +  +    + ++   NE +A YAA  Y    G   +
Sbjct: 10  LDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAAL 69

Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE--------LDQVEAV 131
           L T  G G +  + G++       P++ I G+       RG+                  
Sbjct: 70  L-TTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMS 128

Query: 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS 180
           +P +       +     +    +       RPG  YL LP DV  +  +
Sbjct: 129 EPITVAQAVLTEQNACYEIDRVLTTMLRERRPG--YLMLPADVAKKAAT 175

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 183

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

 Score = 63.5 bits (153), Expect = 2e-12
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 16/165 (9%)

Query: 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP- 264
             + +    L  A++PLI +G GA   +A  EL++L ++  IP + T   KG++ D +P 
Sbjct: 18  QAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPA 75

Query: 265 ------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL 318
                   A    + A+ Q DV L VG    +          +      +     +  + 
Sbjct: 76  YLGSANRVAQKPANEALAQADVVLFVGNNYPF--AEVSKAFKNTRYFLQIDIDPAKLGKR 133

Query: 319 RKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKD 363
            K  + ++ DA+K L  I  ++ +      ++ PW +A     K+
Sbjct: 134 HKTDIAVLADAQKTLAAILAQVSER-----ESTPWWQANLANVKN 173

>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

 Score = 62.5 bits (151), Expect = 4e-12
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 11/170 (6%)

Query: 21  AKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGYLTGKPGI 79
           A+ L   G  H F V G     L +  +    +  +   NE + G++A  Y    G    
Sbjct: 9   AERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAA 68

Query: 80  LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE--------LDQVEAV 131
           +      G +     +        P+++ISG+ +  D   G              Q+E  
Sbjct: 69  V-VTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMA 127

Query: 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISV 181
           K  +  A       E P  +  V++ A+  +    YL++  ++     + 
Sbjct: 128 KNITAAAEAIYTPEEAPAKIDHVIKTALREK-KPVYLEIACNIASMPCAA 176

>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 177

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 12/163 (7%)

Query: 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAE-----GELKKLVESTGIPFLPTPMGKGLLP 260
            DID AV LL  +K+P+I  G G             ++K  V +TG  F         L 
Sbjct: 9   QDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEWDFEALT 68

Query: 261 DTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK 320
            +         +  I + D  L  G+   +     E    + D    +        +   
Sbjct: 69  GSTYRVGWKPANETILEADTVLFAGSNFPF--SEVEGTFRNVDNFIQIDIDPAMLGKRHH 126

Query: 321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKD 363
             + ++GDA   ++ I  ++        +   W  A  K   +
Sbjct: 127 ADVAILGDAALAIDEILNKVDAV-----EESAWWTANLKNIAN 164

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

 Score = 61.1 bits (147), Expect = 1e-11
 Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 3/95 (3%)

Query: 378 PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVG 437
             N+   + ++RD +L   +P   LV+EGAN +D  R ++   +PR RLD+GTWG MG+G
Sbjct: 5   MMNYSNSLGVVRDFMLA--NPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIG 62

Query: 438 LGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW 472
           +GYC+ AA A   + V+AVEGDS FGFS +E+E  
Sbjct: 63  MGYCV-AAAAVTGKPVIAVEGDSAFGFSGMELETI 96

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 382 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYC 441
           +    I R  +  + +P   +++E  ++       +             WG +G  +   
Sbjct: 3   LVNAEIAR-QVEALLTPNTTVIAETGDSW-FNAQRMKLPNGARVEYEMQWGHIGWSVPAA 60

Query: 442 IAAAIACPERLVVAVEGDSGFGFSAVEVEVW 472
              A+  PER  + + GD  F  +A EV   
Sbjct: 61  FGYAVGAPERRNILMVGDGSFQLTAQEVAQM 91

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 378 PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVG 437
           P   +T     R  +     P  I++++   +   G   L        +    WG++G  
Sbjct: 1   PDGSLTQENFWR-TLQTFIRPGDIILADQGTSA-FGAIDLRLPADVNFIVQPLWGSIGYT 58

Query: 438 LGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482
           L     A  ACP R V+ + GD     +  E+   L        +
Sbjct: 59  LAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIIL 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	482
d2ez9a2	174	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	100.0
d1ozha2	181	Catabolic acetolactate synthase {Klebsiella pneumo	100.0
d2djia2	184	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	100.0
d1ybha2	195	Acetohydroxyacid synthase catalytic subunit {Thale	100.0
d1t9ba2	175	Acetohydroxyacid synthase catalytic subunit {Baker	100.0
d1q6za2	180	Benzoylformate decarboxylase {Pseudomonas putida [	100.0
d2ji7a2	188	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	100.0
d2ihta2	186	Carboxyethylarginine synthase {Streptomyces clavul	100.0
d1zpda2	186	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	100.0
d1pvda2	180	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	100.0
d1ovma2	178	Indole-3-pyruvate decarboxylase {Enterobacter cloa	100.0
d2ji7a1	175	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	99.97
d2ez9a1	183	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	99.95
d1ybha1	179	Acetohydroxyacid synthase catalytic subunit {Thale	99.95
d2djia1	177	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	99.95
d1ozha1	179	Catabolic acetolactate synthase {Klebsiella pneumo	99.95
d1t9ba1	171	Acetohydroxyacid synthase catalytic subunit {Baker	99.95
d2ihta1	177	Carboxyethylarginine synthase {Streptomyces clavul	99.94
d1q6za1	160	Benzoylformate decarboxylase {Pseudomonas putida [	99.92
d1pvda1	179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	99.91
d1ovma1	161	Indole-3-pyruvate decarboxylase {Enterobacter cloa	99.9
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	99.9
d2ez9a3	228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	99.88
d1ybha3	208	Acetohydroxyacid synthase catalytic subunit {Thale	99.88
d2djia3	229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	99.86
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	99.86
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	99.86
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	99.85
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	99.85
d1ovma3	196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	99.84
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	99.84
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	99.83
d1pvda3	196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	99.8
d1ytla1	158	Acetyl-CoA decarbonylase/synthase complex epsilon	99.7
d2c42a1	257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	98.73
d1efva2	124	C-terminal domain of the electron transfer flavopr	98.02
d3clsd2	123	C-terminal domain of the electron transfer flavopr	97.61
d1ma3a_	252	AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog	96.96
d1gpua2	197	Transketolase (TK), Pyr module {Baker's yeast (Sac	96.91
d1itza2	192	Transketolase (TK), Pyr module {Maize (Zea mays) [	96.7
d1j8fa_	323	Sirt2 histone deacetylase {Human (Homo sapiens) [T	96.68
d2r8oa1	195	Transketolase (TK), Pyr module {Escherichia coli [	96.42
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	96.42
d1r9ja1	190	Transketolase (TK), Pyr module {Leishmania mexican	96.38
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	96.31
d2ez9a3	228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	96.27
d1d4oa_	177	Transhydrogenase domain III (dIII) {Cow (Bos tauru	96.19
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	96.12
d2djia3	229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	96.06
d1pnoa_	180	Transhydrogenase domain III (dIII) {Rhodospirillum	95.86
d2b4ya1	267	NAD-dependent deacetylase sirtuin-5 {Human (Homo s	95.76
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	95.74
d1m2ka_	249	AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo	95.6
d1s5pa_	235	NAD-dependent deacetylase CobB {Escherichia coli [	95.45
d1r9ja2	336	Transketolase (TK), PP module {Leishmania mexicana	95.44
d1q1aa_	289	Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.31
d1gpua1	335	Transketolase (TK), PP module {Baker's yeast (Sacc	95.2
d2r8oa2	331	Transketolase (TK), PP module {Escherichia coli [T	95.18
d1ovma3	196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	95.08
d1yc5a1	245	NAD-dependent deacetylase NpdA {Thermotoga maritim	95.01
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	94.61
d1itza1	338	Transketolase (TK), PP module {Maize (Zea mays) [T	94.45
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	94.39
d1ybha3	208	Acetohydroxyacid synthase catalytic subunit {Thale	93.92
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	91.51
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	90.92
d1umdb1	186	Branched-chain alpha-keto acid dehydrogenase, Pyr	90.6
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	90.45
d1pvda3	196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	90.04
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	89.27
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	89.17
d2ozlb1	192	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	88.92
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	88.69
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	88.11
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	88.1
d1ik6a1	191	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	86.84
d2bfdb1	203	Branched-chain alpha-keto acid dehydrogenase, Pyr	86.54
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	86.36
d2c42a2	447	Pyruvate-ferredoxin oxidoreductase, PFOR, domains	85.41
d1qs0b1	204	2-oxoisovalerate dehydrogenase (E1B), Pyr module {	85.17
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	84.34

>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=100.00  E-value=4.8e-46  Score=331.71  Aligned_cols=169  Identities=23%  Similarity=0.423  Sum_probs=162.3

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .|+++|+|++.|+++||++|||+||+.+++|+++|.+  .+|++|.+|||++|+|||+||+|+||||++|++|+|||++|
T Consensus         2 ~m~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~~i~~i~~r~E~~A~~~A~gyar~tgk~gv~~~t~GpG~~N   81 (174)
T d2ez9a2           2 NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTH   81 (174)
T ss_dssp             EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred             CchHHHHHHHHHHHCCCCEEEEECCHhHHHHHHHHHhcCCCcEEEEecccchhHHHHHHHHhhcCceeEEeecccccccc
Confidence            5789999999999999999999999999999999953  47999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++|+.+++|||+|+|+.+++..+++.+|++||..+++++|||+.++.+++++++.+++|++.|.++ ||||||+|
T Consensus        82 ~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-pGPv~l~i  160 (174)
T d2ez9a2          82 LMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAH-QGVAVVQI  160 (174)
T ss_dssp             THHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCHHHHTTTCSEEEECCCSTTHHHHHHHHHHHHHHH-TSEEEEEE
T ss_pred             hhhhHHHHHhcCccceeeeccccccccCccccccchhhhhhccccccccccccHHHHHHHHHHHHHHHhCC-CCCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999874 69999999


Q ss_pred             CcchhccccChh
Q 011590          171 PTDVLHQTISVS  182 (482)
Q Consensus       171 P~dv~~~~~~~~  182 (482)
                      |.|++.++++.+
T Consensus       161 P~Dv~~~~i~~~  172 (174)
T d2ez9a2         161 PVDLPWQQIPAE  172 (174)
T ss_dssp             ETTGGGSEEETT
T ss_pred             CcccccCcCCcC
Confidence            999999998753

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=100.00  E-value=4.3e-46  Score=334.13  Aligned_cols=169  Identities=27%  Similarity=0.535  Sum_probs=159.8

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      .+||+|+|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||++|++|+|||++|++
T Consensus         4 ~~~G~d~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~   83 (181)
T d1ozha2           4 WAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI   83 (181)
T ss_dssp             ESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred             cccHHHHHHHHHHHCCCCEEEEeCcHhHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhcCCccceeeccchhhhhhh
Confidence            57999999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +||++|+.|++|||+|+|+.+....+++.+|++||..++++++||+.++.+++++++.+++||+.|.++|+|||||+||.
T Consensus        84 ~gi~~A~~~~~Pvl~isg~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~  163 (181)
T d1ozha2          84 TGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQ  163 (181)
T ss_dssp             HHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             hhHHHHhhcCCceeeeecccchhhccccccccccccccccccchheeccCchhHHHHHHHHHHHHHhhCCCccEEEEcCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhccccCh
Q 011590          173 DVLHQTISV  181 (482)
Q Consensus       173 dv~~~~~~~  181 (482)
                      |+++++++.
T Consensus       164 Dv~~~~~~~  172 (181)
T d1ozha2         164 DVVDGPVSG  172 (181)
T ss_dssp             HHHHSCEEE
T ss_pred             HHhcCcCCC
Confidence            999998874

>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=100.00  E-value=1e-45  Score=332.30  Aligned_cols=170  Identities=25%  Similarity=0.405  Sum_probs=164.0

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHH--hCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV--QLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV   89 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~--~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~   89 (482)
                      .+||++|+|++.|+++||+||||+||+.+++|++++.  +.+|++|.+|||++|++||+||+|+||||+||++|+|||++
T Consensus         2 ~~i~~~~~i~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~r~E~~A~~~A~gyar~tg~~gv~~~t~GpG~~   81 (184)
T d2djia2           2 NKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGAS   81 (184)
T ss_dssp             CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCEEEEECTTHHHH
T ss_pred             CceeHHHHHHHHHHHCCCCEEEEECChhHHHHHHHHHhccCCcEEEEecCCcchHHHHHhhhhcccCcceeecccccccc
Confidence            4789999999999999999999999999999999984  45799999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590           90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD  169 (482)
Q Consensus        90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~  169 (482)
                      |+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++++++++++.+++||+.|.++| |||||+
T Consensus        82 n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~~~~A~~~a~~~r-GPv~i~  160 (184)
T d2djia2          82 HLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLE  160 (184)
T ss_dssp             TTHHHHHHHHHHTCCEEEEEEESCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred             chhHhHHHHHHhCccceeecccchhhHhhcCcccccccccchhhhcceeeccccchhhHHHHHHHHHHHhCCC-CCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986 999999


Q ss_pred             cCcchhccccChh
Q 011590          170 LPTDVLHQTISVS  182 (482)
Q Consensus       170 iP~dv~~~~~~~~  182 (482)
                      ||.|++.++++..
T Consensus       161 iP~Dv~~~~v~~~  173 (184)
T d2djia2         161 VPGDFAKVEIDND  173 (184)
T ss_dssp             EETTGGGCEEEGG
T ss_pred             eCchhhhCcCCCc
Confidence            9999999998754

>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=100.00  E-value=4.2e-45  Score=331.61  Aligned_cols=169  Identities=27%  Similarity=0.491  Sum_probs=163.5

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .+++|+|+|++.|+++||+||||+||+.+++|+++|.+. +++++.+|||++|++||+||+|+||||+||++|+|||++|
T Consensus        10 ~~~~Gad~i~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N   89 (195)
T d1ybha2          10 QPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATN   89 (195)
T ss_dssp             CCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEcCCccHHHHHHHHhhhcceeecccccHHHHHHHHHHHHHHHCCCeEEEEecChHHHH
Confidence            468999999999999999999999999999999999764 5999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++|+.+++|||+|+|+.+....+++.+|++|+..++++++||+.++.+++++++.+++||+.|.++|+|||||+|
T Consensus        90 ~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~A~~~a~~~r~GPV~l~i  169 (195)
T d1ybha2          90 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDV  169 (195)
T ss_dssp             THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             HHHHHHHHHHcCCCEEEEecCCcHHHhccCcccccchhhhhcccccchhhcchHhhcchHHHHHHHHHhcCCCCcEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccC
Q 011590          171 PTDVLHQTIS  180 (482)
Q Consensus       171 P~dv~~~~~~  180 (482)
                      |.|++.+++.
T Consensus       170 P~Dv~~~~~~  179 (195)
T d1ybha2         170 PKDIQQQLAI  179 (195)
T ss_dssp             EHHHHHCEEC
T ss_pred             ChHHhhCccC
Confidence            9999988754

>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-45  Score=325.98  Aligned_cols=170  Identities=28%  Similarity=0.485  Sum_probs=164.5

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH   90 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N   90 (482)
                      .+||++|+|++.|+++||+||||+||+++++|++++.+ .++++|.+|||++|++||+||+|++|||++|++|+|||++|
T Consensus         2 ~~mtg~~~l~~~L~~~Gi~~vFgipG~~~~~l~~al~~~~~~~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n   81 (175)
T d1t9ba2           2 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN   81 (175)
T ss_dssp             TTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHT
T ss_pred             CcEEHHHHHHHHHHHCCCCEEEEcCChhHHHHHHHHhhcccceEEEecCchhHHHHHHHHHHHhCCceEEEEecCcHHHH
Confidence            36899999999999999999999999999999999964 57999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590           91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus        91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||+.++++++++.+.+++|++.|.++|+|||||+|
T Consensus        82 ~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i  161 (175)
T d1t9ba2          82 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDL  161 (175)
T ss_dssp             THHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             HHHHHHHHHHcCCCEEEEecCCChhhcCCCccccccHhHhcccceeeeEecCCHHHHHHHHHHHHHHHhcCCCccEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccccCh
Q 011590          171 PTDVLHQTISV  181 (482)
Q Consensus       171 P~dv~~~~~~~  181 (482)
                      |.|++.++++.
T Consensus       162 P~Dv~~~~~~~  172 (175)
T d1t9ba2         162 PKDVTAAILRN  172 (175)
T ss_dssp             EHHHHHSBCCS
T ss_pred             ChhhhhccccC
Confidence            99999888764

>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=2.6e-45  Score=328.74  Aligned_cols=167  Identities=19%  Similarity=0.283  Sum_probs=160.6

Q ss_pred             cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 011590           15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG   94 (482)
Q Consensus        15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~a   94 (482)
                      |++++|++.|+++||+||||+||+.+++|++++. .++++|.+|||++|++||+||+|+||||++|++|+|||++|+++|
T Consensus         2 ~v~~~i~e~L~~~GV~~vFgipG~~~~~~~~al~-~~i~~i~~rhE~~A~~mA~gyar~tgk~~v~~~~~GpG~~n~~~g   80 (180)
T d1q6za2           2 SVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGA   80 (180)
T ss_dssp             BHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHH
T ss_pred             cHHHHHHHHHHHCCCCEEEEECcHhHHHHHHHHH-hCCeEEEEccchhHHHHHHHHhhhccCcceEEeccccccccccce
Confidence            6899999999999999999999999999999986 589999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCcEEEEeCCCCcccCCCCC-CCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590           95 LSNGMINTWPIVMISGSCDQKDFGRGD-FQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus        95 i~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      |++|+.+++|||+|+|+.++...+++. +|++||.++++++|||+.++.+++++++.+++||+.|.++|+|||||+||.|
T Consensus        81 l~~A~~~~~Pvlvi~g~~~~~~~g~~~~~q~~D~~~~~~~~tK~~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D  160 (180)
T d1q6za2          81 LSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD  160 (180)
T ss_dssp             HHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred             eHhhhhcccceeeeccccccccccccccchhhheeecccccccccccCCCHHHHHHHHHHHHHHHhcCCCccEEEEcChh
Confidence            999999999999999999998888765 8999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccChh
Q 011590          174 VLHQTISVS  182 (482)
Q Consensus       174 v~~~~~~~~  182 (482)
                      ++.++++.+
T Consensus       161 ~~~~~~~p~  169 (180)
T d1q6za2         161 DWDKDADPQ  169 (180)
T ss_dssp             GTTSBCCGG
T ss_pred             HhcCcCCCC
Confidence            999988743

>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=100.00  E-value=1.1e-44  Score=327.76  Aligned_cols=170  Identities=42%  Similarity=0.775  Sum_probs=162.3

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA   93 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~   93 (482)
                      ++|+|+|++.|+++||+++||+||+.+.++++++.+.++++|.++||++|++||+||+|++|||+||++|+|||++|+++
T Consensus         4 ~~G~~~i~~~L~~~GV~~vFg~pG~~~~~~~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~   83 (188)
T d2ji7a2           4 TDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVT   83 (188)
T ss_dssp             EEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhCCCEEEEecccchhhhHHHHHHhhhcccceeeccccccccccch
Confidence            46999999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcEEEEeCCCCcccC--CCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590           94 GLSNGMINTWPIVMISGSCDQKDF--GRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus        94 ai~~A~~~~~Pvl~i~g~~~~~~~--~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ||++||.+++|||+|+|+.++...  +++.+|++||..+|+++|||++++.+++++++.+++||+.|.++|+|||||+||
T Consensus        84 gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l~iP  163 (188)
T d2ji7a2          84 SLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLP  163 (188)
T ss_dssp             HHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred             hHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCcchhhhccccccccHHHHHHHHHHHhCCCCceEEEEcC
Confidence            999999999999999999887643  457899999999999999999999999999999999999999999999999999


Q ss_pred             cchhccccChhH
Q 011590          172 TDVLHQTISVSE  183 (482)
Q Consensus       172 ~dv~~~~~~~~~  183 (482)
                      .|++.++++.+.
T Consensus       164 ~dv~~~~~~~~~  175 (188)
T d2ji7a2         164 AKLFGQTISVEE  175 (188)
T ss_dssp             HHHHTCEEEHHH
T ss_pred             hhHhhCccCccc
Confidence            999999987544

>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=100.00  E-value=8.4e-44  Score=321.03  Aligned_cols=166  Identities=26%  Similarity=0.445  Sum_probs=156.4

Q ss_pred             cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 011590           15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG   94 (482)
Q Consensus        15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~a   94 (482)
                      |++++|++.|+++||+||||+||+.+++++++ ..++|++|.++||++|++||+||+|+|||++||++|+|||++|+++|
T Consensus         2 T~a~~lv~~L~~~Gv~~vFgipG~~~~~~~~~-~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~g   80 (186)
T d2ihta2           2 TAAHALLSRLRDHGVGKVFGVVGREAASILFD-EVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTG   80 (186)
T ss_dssp             CHHHHHHHHHHHTTCCEEEECCCGGGGTCCSC-SSTTCEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCEEEEECChhHHHHHHH-HhcCCEEEEEccchhhHHHHHHHhhccCCcceeeccccccccchhhh
Confidence            79999999999999999999999999998765 34689999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590           95 LSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus        95 i~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      |++|+.|++|||+|+|+.+... .+.+.+|++||..+|++++||++++++++++++.+++||+.|.++|+|||||+||.|
T Consensus        81 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~D  160 (186)
T d2ihta2          81 IATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD  160 (186)
T ss_dssp             HHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred             hhHHHHhhccceeeeccCcchhccccccccccccccccCCceeeccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHh
Confidence            9999999999999999998765 455678999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCh
Q 011590          174 VLHQTISV  181 (482)
Q Consensus       174 v~~~~~~~  181 (482)
                      ++.++.+.
T Consensus       161 i~~~~~~~  168 (186)
T d2ihta2         161 LLGSSEGI  168 (186)
T ss_dssp             HHTCCTTC
T ss_pred             HhhCcccc
Confidence            99887664

>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=100.00  E-value=2.9e-41  Score=304.37  Aligned_cols=166  Identities=19%  Similarity=0.318  Sum_probs=152.6

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL   92 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~   92 (482)
                      .|++|+|++.|+++||+||||+||+.+++|++++.+ .++++|.+|||++|+|||+||+|++||+++|+ |+|||++|++
T Consensus         2 ~Tv~~~l~~~L~~~Gv~~vFgvpG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~-t~GpG~~N~~   80 (186)
T d1zpda2           2 YTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVV-TYSVGALSAF   80 (186)
T ss_dssp             CBHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEE-CTTTTHHHHH
T ss_pred             eeHHHHHHHHHHHCCCCEEEEeCChhHHHHHHHHHHcCCceEeeeccccceehhhhhhhhccccceeEe-eccccchhhh
Confidence            589999999999999999999999999999999875 58999999999999999999999999998764 7899999999


Q ss_pred             HHHHHhhhCCCcEEEEeCCCCcccCCCCCC-----C--C-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCc
Q 011590           93 AGLSNGMINTWPIVMISGSCDQKDFGRGDF-----Q--E-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPG  164 (482)
Q Consensus        93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~-----q--~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~g  164 (482)
                      +||++|+.+++|||+|+|+.+....+++..     |  + .||.++++++|||+.++.+++++++.+++|++.|.++| |
T Consensus        81 ~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-~  159 (186)
T d1zpda2          81 DAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK-K  159 (186)
T ss_dssp             HHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHGGGCSCEEEECSGGGHHHHHHHHHHHHHHHT-C
T ss_pred             hhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhccCCceeeeeEcCCHHHHHHHHHHHHHHHhhCC-C
Confidence            999999999999999999998887765432     2  2 25789999999999999999999999999999999987 7


Q ss_pred             eEEEEcCcchhccccCh
Q 011590          165 GCYLDLPTDVLHQTISV  181 (482)
Q Consensus       165 Pv~l~iP~dv~~~~~~~  181 (482)
                      ||||+||.|++.++++.
T Consensus       160 PV~l~iP~Dv~~~~~~~  176 (186)
T d1zpda2         160 PVYLEIACNIASMPCAA  176 (186)
T ss_dssp             CEEEEEETTSTTSBCCE
T ss_pred             CEEEECCcchhhCcCCC
Confidence            99999999999988864

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-41  Score=303.55  Aligned_cols=168  Identities=18%  Similarity=0.274  Sum_probs=148.4

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      +||++|+|++.|+++||++|||+||+.+++|++++.+ ++|++|.++||++|+|||+||+|.+|++ +|++|+|||++|+
T Consensus         2 emt~~~~i~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t~~~-~v~~t~GpG~~N~   80 (180)
T d1pvda2           2 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS-CIITTFGVGELSA   80 (180)
T ss_dssp             EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHGGGGSTTCEECCCSCHHHHHHHHHHHHHHHSCE-EEEEETTHHHHHH
T ss_pred             ccCHHHHHHHHHHHCCCCEEEEeCCccHHHHHHHHHHhcceEEeeecccchhhHHHHHHhhccCCc-eeeeccccccchh
Confidence            6899999999999999999999999999999999975 5799999999999999999999999886 5678999999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC--------cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE--------LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~--------~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      ++||++|+.+++|||+|+|+.+....+++.+|+        .++..+++++|||+.++++++++++.+++|++.|.+. |
T Consensus        81 ~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~-~  159 (180)
T d1pvda2          81 LNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVT-Q  159 (180)
T ss_dssp             HHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHHH-T
T ss_pred             hHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhCC-C
Confidence            999999999999999999998888766654322        2356899999999999999999999999999999875 5


Q ss_pred             ceEEEEcCcchhccccChh
Q 011590          164 GGCYLDLPTDVLHQTISVS  182 (482)
Q Consensus       164 gPv~l~iP~dv~~~~~~~~  182 (482)
                      |||||+||.|+++.++|++
T Consensus       160 gPv~i~iP~dv~~~~vp~~  178 (180)
T d1pvda2         160 RPVYLGLPANLVDLNVPAK  178 (180)
T ss_dssp             SCEEEEEETTTTTSEEEGG
T ss_pred             CCEEEECCcccccCcCCcc
Confidence            9999999999999988754

>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=100.00  E-value=5.4e-39  Score=288.26  Aligned_cols=165  Identities=21%  Similarity=0.275  Sum_probs=144.5

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      ++|++|+|++.|+++||++|||+||+.+.++++++.+ .+|++|.++||++|++||+||+|.+||++| ++|+|||++|+
T Consensus         2 p~tvad~iv~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~~A~gyar~t~~~~v-~~t~GpG~~n~   80 (178)
T d1ovma2           2 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAAL-LTTFGVGELSA   80 (178)
T ss_dssp             CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEE-EEETTHHHHHT
T ss_pred             CccHHHHHHHHHHHCCCCEEEEeCChhHHHHHHHHHhCCCeEEEEeccchhhHHHHHHHHhcCCCceE-Eeecccccccc
Confidence            5799999999999999999999999999999999976 689999999999999999999999999875 67899999999


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCC--------CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ--------ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--------~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      ++||++|+.+++|||+|+|+.++...+++.+|        ..|+..++++++||+.++++++++.++++.+++.+.+ + 
T Consensus        81 ~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~~~-~-  158 (178)
T d1ovma2          81 MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-R-  158 (178)
T ss_dssp             HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-T-
T ss_pred             chhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEEeCcHHHHHHHHHHHHHHHhC-C-
Confidence            99999999999999999999987765444322        1357889999999999999999888865555444444 3 


Q ss_pred             ceEEEEcCcchhccccC
Q 011590          164 GGCYLDLPTDVLHQTIS  180 (482)
Q Consensus       164 gPv~l~iP~dv~~~~~~  180 (482)
                      |||||+||.|++.++++
T Consensus       159 ~Pv~i~iP~Dv~~~~~~  175 (178)
T d1ovma2         159 RPGYLMLPADVAKKAAT  175 (178)
T ss_dssp             CCEEEEEEHHHHHSBCC
T ss_pred             CCEEEEEChHHhhCccC
Confidence            79999999999988875

>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=99.97  E-value=9.8e-30  Score=226.88  Aligned_cols=167  Identities=40%  Similarity=0.735  Sum_probs=146.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEE
Q 011590          202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVA  281 (482)
Q Consensus       202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlv  281 (482)
                      -|+++.+++++++|.+|+||+|++|+|+.++++.+++.+|+|++|+||++|+++||+||++||+|+|..++.++++||||
T Consensus         3 ~P~~~~l~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~~~g~~~~~h~~~~~~~~~~~l~~aDli   82 (175)
T d2ji7a1           3 IPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVC   82 (175)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTBTTBCTTCTTBCGGGHHHHHHHCSEE
T ss_pred             CcCHHHHHHHHHHHHhCCCEEEEECCCccccccHHHHHHHhhhceeeeeccccccccCCCcccccccccccceeecccce
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHH
Q 011590          282 LVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK  359 (482)
Q Consensus       282 l~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~  359 (482)
                      |+||+++++..++++...| ++++++||||.|+.+++..+ +++.++||++.+|++|.+.++..   ...+..|.+++++
T Consensus        83 i~vG~~~~~~~~~~~~~~~~~~~~kvI~Id~d~~~i~~~~~~~l~i~~D~~~~l~~L~~~l~~~---~~~~~~w~~~~~~  159 (175)
T d2ji7a1          83 VLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGA---PKADAEWTGALKA  159 (175)
T ss_dssp             EEESCCSSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHTTTC---CCSCHHHHHHHHH
T ss_pred             eeeeccCCcccccccccccCCccceEEEEeccchhhccccCcCceEEEcHHHHHHHHHHHhccC---CCCCHHHHHHHHH
Confidence            9999999987777765544 45689999999999997655 59999999999999999998653   1245679888887


Q ss_pred             HHHHhHHHHHHh
Q 011590          360 KTKDNVLKMEVQ  371 (482)
Q Consensus       360 ~~~~~~~~~~~~  371 (482)
                      ..+++..++...
T Consensus       160 ~~~~~~~~~~~~  171 (175)
T d2ji7a1         160 KVDGNKAKLAGK  171 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHH
Confidence            777776655443

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.95  E-value=1.5e-27  Score=213.69  Aligned_cols=161  Identities=24%  Similarity=0.372  Sum_probs=133.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-------H
Q 011590          198 VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------A  270 (482)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-------~  270 (482)
                      +..+.|+++.+++++++|.+|+||+|++|.|++  .+.++|.+|||++|+||++|+++||+||++||+|+|.       .
T Consensus        10 p~~p~pd~~~i~~~~~~L~~A~rPvii~G~G~~--~a~~~l~~lae~~~~Pv~tt~~~~g~~~~~hp~~~G~~G~~~~~~   87 (183)
T d2ez9a1          10 PLLPEPDVQAVTRLTQTLLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKP   87 (183)
T ss_dssp             CCCCBCCHHHHHHHHHHHHHCSSEEEEECGGGT--TCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc--cchHHHHHHhhccceEEEeeccccccccccCccccccccccccHH
Confidence            345678999999999999999999999999986  4668899999999999999999999999999999984       3


Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-CCceeEeccHHHHHHHHHHhhhcCCCCCCC
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGK  349 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~  349 (482)
                      .+.++++||+||+||+++++..+.   ..+++++++||||.|+.+++.. .+++.++||++.+|++|.+.+++.     .
T Consensus        88 ~~~~i~~aDlil~vG~~l~~~~~~---~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~-----~  159 (183)
T d2ez9a1          88 ANEALAQADVVLFVGNNYPFAEVS---KAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSER-----E  159 (183)
T ss_dssp             HHHHHHHCSEEEEESCCCTTTTTT---TTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCCC-----C
T ss_pred             HHhhhhccCceEEeecccCcccce---eecccccchheeeccHHHHhhcCCCCeEEEECHHHHHHHHHHHhhhc-----C
Confidence            567899999999999999875432   2356789999999999999765 459999999999999999998764     2


Q ss_pred             ChHHHHHHHHHHHHhHHHH
Q 011590          350 NHPWVEAIWKKTKDNVLKM  368 (482)
Q Consensus       350 ~~~w~~~~~~~~~~~~~~~  368 (482)
                      ...|+....+..++|+..+
T Consensus       160 ~~~~~~~~~~~~~~wr~~l  178 (183)
T d2ez9a1         160 STPWWQANLANVKNWRAYL  178 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            2344444444445565544

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.95  E-value=4.9e-28  Score=216.49  Aligned_cols=158  Identities=27%  Similarity=0.405  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-------HHHHhh
Q 011590          203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAI  275 (482)
Q Consensus       203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l  275 (482)
                      |+++.+++++++|++||||+|++|+|+.+  +.++|.+|||++|+||++|++++|++|++||+++|.       .+++++
T Consensus         4 P~~~~i~~~~~~L~~AkrPvii~G~G~~~--a~~~l~~lae~~~~Pv~tt~~~~g~~~~~h~~~~G~~G~~g~~~~~~~~   81 (179)
T d1ybha1           4 PEDSHLEQIVRLISESKKPVLYVGGGCLN--SSDELGRFVELTGIPVASTLMGLGSYPCDDELSLHMLGMHGTVYANYAV   81 (179)
T ss_dssp             CCHHHHHHHHHHHHHCSSEEEEECGGGTT--CHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCeEEEECHHHHH--HHHHHHHHHhhhcccceecccccCCCccccccccccCCCcCCHHHHHHH
Confidence            67899999999999999999999999974  467899999999999999999999999999999985       356889


Q ss_pred             hcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCC-CCCChHH
Q 011590          276 GQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFC-LGKNHPW  353 (482)
Q Consensus       276 ~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~w  353 (482)
                      ++|||||++|++++++.++ +...|.+++++||||.|+.++++.+ +++.+++|+..+|++|.+.+++.... ......|
T Consensus        82 ~~aDlil~lG~~l~~~~~~-~~~~~~~~~kiI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~W  160 (179)
T d1ybha1          82 EHSDLLLAFGVRFDDRVTG-KLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVW  160 (179)
T ss_dssp             HHCSEEEEESCCCCHHHHS-SGGGTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHH
T ss_pred             Hhhhhhhhccccccccccc-cccccCCCCeEEEEeCcccccccccCCCceEEeccHHHHHHHHHHHHhhhhcchhhHHHH
Confidence            9999999999999986543 4445788899999999999997654 59999999999999999988654211 1234678


Q ss_pred             HHHHHHHHHH
Q 011590          354 VEAIWKKTKD  363 (482)
Q Consensus       354 ~~~~~~~~~~  363 (482)
                      .+++.+++++
T Consensus       161 ~~~i~~~k~~  170 (179)
T d1ybha1         161 RNELNVQKQK  170 (179)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8887766554

>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=99.95  E-value=2.7e-27  Score=211.33  Aligned_cols=155  Identities=19%  Similarity=0.270  Sum_probs=129.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-------HHHHh
Q 011590          202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLA  274 (482)
Q Consensus       202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~  274 (482)
                      .|+++++++++++|.+||||+|++|+|+.+  +.+++.+|||++|+||++|++++|+||++||+|+|.       ..+++
T Consensus         5 ~P~~~~i~~~~~~l~~Ak~Pvii~G~g~~~--a~~~l~~lae~l~~Pv~~t~~~~g~ip~~hp~~~G~~g~~~~~~~~~~   82 (177)
T d2djia1           5 APAAQDIDAAVELLNNSKRPVIYAGIGTMG--HGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANET   82 (177)
T ss_dssp             CCCHHHHHHHHHHHHTCSSEEEEECGGGTT--CHHHHHHHHHHHTCCEEECTTCGGGSCTTCTTBCCCSSSSSCHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCEEEEECcChhh--HHHHHHHhhhccceEEEecccccccccccccccccccccccChhhhhh
Confidence            578899999999999999999999999875  457899999999999999999999999999999985       35688


Q ss_pred             hhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-CCceeEeccHHHHHHHHHHhhhcCCCCCCCChHH
Q 011590          275 IGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPW  353 (482)
Q Consensus       275 l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w  353 (482)
                      +++|||||+||+++++....+   .|.+++++||||.|+.++++. .+++.+.||+..+|++|++.++..     ....|
T Consensus        83 l~~aDlvi~lG~~~~~~~~~~---~~~~~~kiI~Id~d~~~i~~~~~~d~~i~gD~~~~L~~L~~~l~~~-----~~~~~  154 (177)
T d2djia1          83 ILEADTVLFAGSNFPFSEVEG---TFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAV-----EESAW  154 (177)
T ss_dssp             HHHCSEEEEESCCCTTTTTTT---TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSCCC-----CCCHH
T ss_pred             hhccCceEEeeccCCCcccee---ccccccchheEEecccccCCcccCceEEEeCHHHHHHHHHHhhhhc-----cCcHH
Confidence            999999999999998665444   356788999999999999764 559999999999999999998654     23345


Q ss_pred             HHHHHHHHHHhHH
Q 011590          354 VEAIWKKTKDNVL  366 (482)
Q Consensus       354 ~~~~~~~~~~~~~  366 (482)
                      +....+..++|..
T Consensus       155 ~~~~~~~~~~w~e  167 (177)
T d2djia1         155 WTANLKNIANWRE  167 (177)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5544444555543

>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.95  E-value=3.3e-27  Score=211.06  Aligned_cols=157  Identities=21%  Similarity=0.259  Sum_probs=131.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC-Ccccch-------HHHH
Q 011590          202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH-PLAATA-------ARSL  273 (482)
Q Consensus       202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h-p~~~G~-------~~~~  273 (482)
                      ..+++.+++++++|.+||||+|++|.|+.++++.+++.+|||++|+||++|++++|+||++| |+|+|.       ..++
T Consensus         4 ~a~~~~i~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~~giPv~tt~~~~g~~~~~~~~~~~G~~g~~~~~~~~~   83 (179)
T d1ozha1           4 AAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDR   83 (179)
T ss_dssp             CSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEEEchhhChhhHHHHHHHHHHhccceEEeecccccccccccccccccccCccccHHHhh
Confidence            34567899999999999999999999999999999999999999999999999999999987 788764       3568


Q ss_pred             hhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-CCceeEeccHHHHHHHHHHhhhcCCCCCCCChH
Q 011590          274 AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHP  352 (482)
Q Consensus       274 ~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~  352 (482)
                      ++++||+||+||+++.++.+..+   +++++++||||+|+.+++.. .+++.++||++.+|++|++.++..    ...+.
T Consensus        84 ~~~~aDlvl~vG~~~~~~~~~~~---~~~~~kvI~id~d~~~i~~~~~~d~~i~gD~~~~l~~L~~~l~~~----~~~~~  156 (179)
T d1ozha1          84 LLQLADLVICIGYSPVEYEPAMW---NSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHR----LVLSP  156 (179)
T ss_dssp             HHHHCSEEEEESCCGGGSCGGGT---CCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCCSC----CCCCH
T ss_pred             hhccccceEEEcccccccccccc---ccccccEEEEecchhhcCCccCCCeEEEeCHHHHHHHHHHhhhcc----CCCCH
Confidence            89999999999999987765543   35678999999999999765 459999999999999999998654    12345


Q ss_pred             HHHHHHHHHHHhH
Q 011590          353 WVEAIWKKTKDNV  365 (482)
Q Consensus       353 w~~~~~~~~~~~~  365 (482)
                      |..++.+.+++++
T Consensus       157 ~~~~~~~~~~~~~  169 (179)
T d1ozha1         157 QAAEILRDRQHQR  169 (179)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6665554444443

>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.5e-27  Score=211.86  Aligned_cols=152  Identities=24%  Similarity=0.320  Sum_probs=130.0

Q ss_pred             HHHHHHHHhCCCCEEEEcCCcc-ccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCE
Q 011590          209 DKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDV  280 (482)
Q Consensus       209 ~~~~~~L~~a~rpvil~G~g~~-~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDl  280 (482)
                      ++++++|++||||+|++|.|+. .+++.+++++|||++|+||+||++++|+||++||+++|.       .++..+++||+
T Consensus         1 nkaa~lL~~AkrPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~~~~g~~~~~hp~~~G~~g~~~~~~a~~~~~~~Dl   80 (171)
T d1t9ba1           1 NKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADL   80 (171)
T ss_dssp             HHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSE
T ss_pred             CHHHHHHHHCCCeEEEECcChhhhhhHHHHHHHHHHhcCCceeecccccccccCCcccccccccccccHHHHhhhhcccc
Confidence            4789999999999999999984 467889999999999999999999999999999999984       35688999999


Q ss_pred             EEEecCccCcccccCCCC--------CCCCCCcEEEEeCCchhhccc-CCceeEeccHHHHHHHHHHhhhcCCCCCCCCh
Q 011590          281 ALVVGARLNWLLHFGEPP--------KWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH  351 (482)
Q Consensus       281 vl~iG~~~~~~~~~g~~~--------~~~~~~~ii~id~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~  351 (482)
                      ||++|+++++..+.++..        .+..+.++||||.|+.++++. .+++.|++|+..+|++|.+.+++.    ..++
T Consensus        81 vl~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~iI~Id~d~~el~~~~~~d~~i~~D~~~~l~~L~~~l~~~----~~~~  156 (171)
T d1t9ba1          81 IIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPV----KERS  156 (171)
T ss_dssp             EEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCCC----CCCH
T ss_pred             eeecccccccccccccchhhhhhhhcccCCCceEEEEeCCccccCCcccCceeEEEcHHHHHHHHHHhcccc----cCcH
Confidence            999999999876554321        125678999999999999765 459999999999999999988653    3567


Q ss_pred             HHHHHHHHHHHHh
Q 011590          352 PWVEAIWKKTKDN  364 (482)
Q Consensus       352 ~w~~~~~~~~~~~  364 (482)
                      .|.+++.+.+++|
T Consensus       157 ~W~~~~~~~k~~~  169 (171)
T d1t9ba1         157 EWFAQINKWKKEY  169 (171)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHC
Confidence            8999888877765

>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.94  E-value=1.9e-27  Score=212.44  Aligned_cols=139  Identities=26%  Similarity=0.295  Sum_probs=122.5

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH------------H
Q 011590          204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA------------R  271 (482)
Q Consensus       204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~------------~  271 (482)
                      .++.+++++++|.+||||+|++|.|++++++.+++++|||++|+||++|+++||+||++||+|+|..            .
T Consensus         5 ~~~~i~~a~~lL~~AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~~kg~~p~~hp~~~G~~~~~~~G~~~~~~~   84 (177)
T d2ihta1           5 WQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPAL   84 (177)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHH
T ss_pred             CHHHHHHHHHHHHhCCCEEEEECcCcchhhhHHHHHHHhhcceEEEEeccccccCCCCcccceeeeeeeccccccccHHH
Confidence            3578999999999999999999999999999999999999999999999999999999999999842            3


Q ss_pred             HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-CCceeEeccHHHHHHHHHHhhhcC
Q 011590          272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDE  343 (482)
Q Consensus       272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~~  343 (482)
                      ++++++||+||+||+++++..+.+. ..+.+++++||||.|+.+++.. .+++.+.+|+..+|++|.+.+.+.
T Consensus        85 ~~~l~~aDlvl~vG~~~~~~~~~~~-~~~~~~~k~I~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~  156 (177)
T d2ihta1          85 QTMFAPVDLVLTVGYDYAEDLRPSM-WQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASF  156 (177)
T ss_dssp             HHHHTTCCEEEEETCCGGGCCCHHH-HCCSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTC
T ss_pred             HHHhccCCceEEecccccccccccc-cccCCccceeEEcCCHHHhCCccCCCeEEEeCHHHHHHHHHHHhhhc
Confidence            5789999999999999986543222 2356788999999999999754 569999999999999999988655

>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=7.6e-25  Score=192.19  Aligned_cols=142  Identities=20%  Similarity=0.241  Sum_probs=127.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC-CCCCCCCCCCCCcccch------HHHHh
Q 011590          202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT-PMGKGLLPDTHPLAATA------ARSLA  274 (482)
Q Consensus       202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t-~~~~g~~~~~hp~~~G~------~~~~~  274 (482)
                      .++++++++++++|++|+||+|++|.|++++++.+++.+|||++|+||++| ..+++++|++||++.|.      ..+++
T Consensus         3 ~~~~~~ld~~~~~l~~A~rPvii~G~g~~~~~~~~~l~~lae~l~~pv~~t~~~~~~~~~~~~p~~~G~~~~~~~~~~~~   82 (160)
T d1q6za1           3 RLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQL   82 (160)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECCSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEEECcCccccccchHHHHHHHhcCceEEeecccccccccccccccccccccCcHHHHHH
Confidence            567899999999999999999999999999999999999999999998755 57899999999999984      35688


Q ss_pred             hhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhcC
Q 011590          275 IGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDE  343 (482)
Q Consensus       275 l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~  343 (482)
                      +++||+||++|+++.++.++.+...+.+++++||||.|+.++++++.++.+++|++.+|++|.+.+++.
T Consensus        83 l~~aDlil~lG~~l~~~~~~~~~~~~~~~~~ii~v~~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~  151 (160)
T d1q6za1          83 LEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEES  151 (160)
T ss_dssp             HTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSCCC
T ss_pred             HhcCCeEEEEecccccccccccccccccCceEEEeeCCHHHhCCCCCCeeEEeCHHHHHHHHHHhcccc
Confidence            999999999999998876666656677889999999999999877779999999999999999998765

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.8e-25  Score=195.10  Aligned_cols=138  Identities=27%  Similarity=0.286  Sum_probs=114.2

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhh
Q 011590          204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAI  275 (482)
Q Consensus       204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l  275 (482)
                      +++.+++++++|.+||||+|++|.|+.++++.+++.+|+|++|+||+||++|||+||++||+|+|.        ..++++
T Consensus        16 ~~~~i~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~e~hp~~~G~~~g~~~~~~~~~~~   95 (179)
T d1pvda1          16 EKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAV   95 (179)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEEECGGGTTTSTHHHHHHHHHHHCCCEEECGGGTTSSCTTSTTEEEECCSTTSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEecccchhhhHHHHHHHHHhhCceEEecccccccccccccccccccccccCCHHHHHHh
Confidence            457899999999999999999999999999999999999999999999999999999999999984        256789


Q ss_pred             hcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-CCceeEeccHHHHHHHHHHhhhc
Q 011590          276 GQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       276 ~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ++||+||+||+++++++++++. .+.++.++||||.|+.+++.. .+++.+.+|++.++++|.+..+.
T Consensus        96 ~~aDlvl~lG~~~~d~~t~~~~-~~~~~~~iI~i~~d~~~i~~~~~~~v~i~~~l~~ll~~l~~~~~~  162 (179)
T d1pvda1          96 ESADLILSVGALLSDFNTGSFS-YSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTNIADAAKG  162 (179)
T ss_dssp             HTCSEEEEESCCCCC-----------CCCEEEEEETTEEEETTEEEETCCHHHHHHHHHHHHHHHTTT
T ss_pred             hcCCEEEEEcCCccccccCcCc-ccCCCCcEEEEeCCHHHhCCcccCCccHHHHHHHHHHHHHHHHhc
Confidence            9999999999999987765543 445678999999999988644 45788888888888888776543

>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.90  E-value=3.4e-24  Score=187.93  Aligned_cols=132  Identities=18%  Similarity=0.121  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhc
Q 011590          206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQ  277 (482)
Q Consensus       206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~  277 (482)
                      ..+++++++|++||||+||+|.|+.++++.++|.+|+|++|+||+||++|||+||++||+|+|.        ..++++++
T Consensus        17 a~~~~a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~~iPv~tt~~gkg~i~e~~p~~~G~~~G~~~~~~~~~~i~~   96 (161)
T d1ovma1          17 AFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEG   96 (161)
T ss_dssp             HHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcEEEECcCcChhhhHHHHHHHHHhcCccEEEcCCcCCcccccccccccccCCCcCcHHHHHHHhc
Confidence            4566778899999999999999999999999999999999999999999999999999999884        24578999


Q ss_pred             CCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-CCceeEeccHHHHHHHHHHhhhc
Q 011590          278 CDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       278 aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ||+||+||+++++++++++.. +.++.++||||.|+.+++.. .+++.    +..+|++|.+.+++
T Consensus        97 aDliL~iG~~l~~~~t~~~~~-~~~~~kiI~id~d~~~i~~~~~~~v~----l~~~l~~L~e~l~~  157 (161)
T d1ovma1          97 ADTVLCVGTRFTDTLTAGFTH-QLTPAQTIEVQPHAARVGDVWFTGIP----MNQAIETLVELCKQ  157 (161)
T ss_dssp             SSEEEEESCCCCTTTTTTTCC-CCCTTTEEEECSSEEEETTEEEESCC----HHHHHHHHHHHHHT
T ss_pred             CCEEEEECCcccccccccccc-cCCCceEEEEeCCHHHhCCeeecCcc----HHHHHHHHHHHHHh
Confidence            999999999999887766554 34568999999999888643 33553    46678888887764

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.90  E-value=6.3e-24  Score=188.80  Aligned_cols=133  Identities=16%  Similarity=0.224  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhh
Q 011590          205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIG  276 (482)
Q Consensus       205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~  276 (482)
                      +..+++++++|.+||||+|++|.|++++++.+++.+|+|++|+||++|++|||+||++||+|+|.        ..+++++
T Consensus         9 ~~~v~~~~~~l~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~i~e~~p~~~G~~~G~~~~~~~~~~~~   88 (175)
T d1zpda1           9 NAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMK   88 (175)
T ss_dssp             HHHHHHHHHHHTTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCCEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEECcCccccchHHHHHHHHHhhceeEEeccccccCCCcccccccCCcccccchHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999999999999999984        2467899


Q ss_pred             cCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-CCceeEeccHHHHHHHHHHhhhc
Q 011590          277 QCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       277 ~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      +||+||+||++++++++.++. .+.++.++||||.|+..++.. .+++    ++..+|++|.+++++
T Consensus        89 ~aDlvl~lG~~~~d~~t~~~~-~~~~~~~~I~i~~d~~~i~~~~~~~v----~~~~~l~~L~~~l~~  150 (175)
T d1zpda1          89 EADAVIALAPVFNDYSTTGWT-DIPDPKKLVLAEPRSVVVNGIRFPSV----HLKDYLTRLAQKVSK  150 (175)
T ss_dssp             HCSEEEEESCCCBTTTTTTTT-CCCCGGGEEEECSSEEEETTEEEESC----CHHHHHHHHHHHCCC
T ss_pred             cCceEEEEcCccCccccCCcc-ccCCCCeEEEEeCchheEcccccCCc----CHHHHHHHHHHHhcc
Confidence            999999999999988766654 345678999999999887532 2333    578899999998764

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.88  E-value=8.5e-24  Score=195.04  Aligned_cols=102  Identities=22%  Similarity=0.353  Sum_probs=92.8

Q ss_pred             CCCCCcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEE
Q 011590          376 VVPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVV  454 (482)
Q Consensus       376 ~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi  454 (482)
                      ++|+++.++++.|++.+    |+|+|++.|+ .+..|..+ +|+...|++|+.++++|+|||++|+||||++|.|+++||
T Consensus         3 ~gpi~p~~v~~~l~~~l----~~d~ivv~D~G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~Vv   77 (228)
T d2ez9a3           3 EGPLQAYQVLRAVNKIA----EPDAIYSIDVGDINLNANR-HLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVF   77 (228)
T ss_dssp             SSBCCHHHHHHHHHHHC----CTTCEEEECSSHHHHHHHH-HCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEE
T ss_pred             CCCcCHHHHHHHHHhhC----CCCeEEEEcCcHHHHHHHH-HccCCCCceeeeecccccccccchhhhhhhhhhccceeE
Confidence            46899999999999998    9999999995 45565544 578889999999999999999999999999999999999


Q ss_pred             EEEcchhccCChHHHHHHHHcCcccccC
Q 011590          455 AVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       455 ~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +++|||||+|++|||+|++||++|+++|
T Consensus        78 ~i~GDG~f~m~~~EL~Ta~~~~lpi~~v  105 (228)
T d2ez9a3          78 NLAGDGGASMTMQDLATQVQYHLPVINV  105 (228)
T ss_dssp             EEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred             eecCCccccccchhhhhhccccCceEEE
Confidence            9999999999999999999999999875

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.88  E-value=1.1e-23  Score=192.27  Aligned_cols=100  Identities=22%  Similarity=0.380  Sum_probs=92.0

Q ss_pred             CCCcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEE
Q 011590          378 PFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV  456 (482)
Q Consensus       378 ~~~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~  456 (482)
                      +++|.++++.|++++    |+|+|++.| |.+..|..+ +|+..+|++++.++++|+|||++|+|||+++|+|+++||++
T Consensus         2 ~i~P~~v~~~l~~~l----~~d~ivv~D~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~~A~p~~~Vi~i   76 (208)
T d1ybha3           2 AIPPQYAIKVLDELT----DGKAIISTGVGQHQMWAAQ-FYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDI   76 (208)
T ss_dssp             BCCHHHHHHHHHHHT----TTCCEEEECSSHHHHHHHH-SCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEE
T ss_pred             ccCHHHHHHHHHhhC----CcCeEEEEcCcHHHHHHHH-hcccCCCceeccccccccchhhhhhHHHHHhcCCCCcEEEE
Confidence            478889999999999    999999999 556777665 56888999999999999999999999999999999999999


Q ss_pred             EcchhccCChHHHHHHHHcCcccccC
Q 011590          457 EGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       457 ~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|||||+|++|||+|++||+||+++|
T Consensus        77 ~GDGsf~m~~~El~Ta~r~~lpi~ii  102 (208)
T d1ybha3          77 DGDGSFIMNVQELATIRVENLPVKVL  102 (208)
T ss_dssp             EEHHHHHHTTTHHHHHHHTTCCEEEE
T ss_pred             ccCCchhhhhhhHHHHHHhCCCEEEE
Confidence            99999999999999999999999875

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=99.86  E-value=7.6e-23  Score=189.01  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=91.5

Q ss_pred             CCCCcccHHHHHHHHHhccCCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEE
Q 011590          377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVA  455 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~  455 (482)
                      +++++.++++.|++.+    |+|+|++.|++ +..|. ..+|+...|++|+.++++|+|||++|+||||++|+|+++|++
T Consensus         1 Gpl~~~~v~~~l~~~l----~~d~iiv~d~G~~~~~~-~~~~~~~~~~~~~~s~~~g~mG~~lp~aiGa~~a~p~~~vv~   75 (229)
T d2djia3           1 GDLQFYQVYNAINNHA----DEDAIYSIDVGNSTQTS-IRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWN   75 (229)
T ss_dssp             SBCCHHHHHHHHHHHS----CTTCEEEECSSHHHHGG-GGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEE
T ss_pred             CCCCHHHHHHHHHhhC----CCCeEEEEcCcHhHHHH-HHHcccCCCCeEEecCCcccccccchhhhhhhhhcccccccc
Confidence            3688899999999998    99999999955 55554 456788899999999999999999999999999999999999


Q ss_pred             EEcchhccCChHHHHHHHHcCcccccC
Q 011590          456 VEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       456 ~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+|||||+|+.|||+|++|+++|+++|
T Consensus        76 i~GDGsf~m~~~eL~ta~~~~lpi~ii  102 (229)
T d2djia3          76 IIGDGAFSMTYPDVVTNVRYNMPVINV  102 (229)
T ss_dssp             EEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred             cccccccccccchhhhhhcccCCceEE
Confidence            999999999999999999999999865

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.5e-22  Score=186.40  Aligned_cols=106  Identities=22%  Similarity=0.317  Sum_probs=94.6

Q ss_pred             CCCCCCcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcE
Q 011590          375 DVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLV  453 (482)
Q Consensus       375 ~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~v  453 (482)
                      ++.+++|.++++.|++++... .+++|+++| |.+..|..+ +|+...|++++.++++|+|||++|+|||+++|+|+|+|
T Consensus         7 ~~~~i~P~~~~~~L~~~~~~~-~~d~ivv~D~G~~~~~~~~-~~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA~p~r~V   84 (227)
T d1t9ba3           7 PGSKIKPQTVIKKLSKVANDT-GRHVIVTTGVGQHQMWAAQ-HWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLV   84 (227)
T ss_dssp             TTCCBCHHHHHHHHHHHHHTT-CSCEEEEECSSHHHHHHHH-HSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEE
T ss_pred             CCCCcCHHHHHHHHHHhcccC-CCCEEEEECCcHHHHHHHH-HcCCCCCceEeeecccccchhhHHHHHHHHhcCCCCeE
Confidence            457899999999999999443 358899988 556777765 46888999999999999999999999999999999999


Q ss_pred             EEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          454 VAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       454 i~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+|+|||||+|++|||+|++||++|+++|
T Consensus        85 v~i~GDGsf~m~~~EL~Ta~r~~l~i~ii  113 (227)
T d1t9ba3          85 IDIDGDASFNMTLTELSSAVQAGTPVKIL  113 (227)
T ss_dssp             EEEEEHHHHHHHGGGHHHHHHHTCCCEEE
T ss_pred             EEeCCCcccccchHHHHHHhhcCCceEEE
Confidence            99999999999999999999999999875

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.86  E-value=1.2e-22  Score=184.71  Aligned_cols=100  Identities=17%  Similarity=0.262  Sum_probs=89.3

Q ss_pred             CCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEE
Q 011590          378 PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE  457 (482)
Q Consensus       378 ~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~  457 (482)
                      |+++.++++.|++.+    ++++|++.|+++..++.+. +....+++++.++++|+|||++|+|+|+++|+|+|+||+++
T Consensus         2 Pl~~~~~~~~l~~~l----~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGa~la~p~~~vv~i~   76 (204)
T d1zpda3           2 PLVNAEIARQVEALL----TPNTTVIAETGDSWFNAQR-MKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMV   76 (204)
T ss_dssp             BCCHHHHHHHHHHTC----CTTEEEEECSSHHHHHHHT-CCCCTTCEEEECTTTCCTTTHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCHHHHHHHHHhhC----CCCCEEEECchHhHHHHHH-hCCCCCCeEEcCCCCcccchhhHHHHHHHHhCCCCceeccc
Confidence            688889999999988    9999999996555555554 45667889999999999999999999999999999999999


Q ss_pred             cchhccCChHHHHHHHHcCcccccC
Q 011590          458 GDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       458 GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |||||+|++|||+|++||++|+++|
T Consensus        77 GDGsf~m~~~eL~Ta~~~~lpi~ii  101 (204)
T d1zpda3          77 GDGSFQLTAQEVAQMVRLKLPVIIF  101 (204)
T ss_dssp             EHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred             cccceeeeecccchhhhcccccceE
Confidence            9999999999999999999999764

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.85  E-value=4e-22  Score=179.51  Aligned_cols=101  Identities=26%  Similarity=0.321  Sum_probs=92.0

Q ss_pred             CCCCcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEE
Q 011590          377 VPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVA  455 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~  455 (482)
                      .|++|.++++.|++.+    |+|++++.|+ .+..|..++ |...+|++|+.++++|+|||++|+|||+++|+|+++||+
T Consensus         3 ~pi~P~~v~~~L~~~l----~~d~ii~~d~G~~~~~~~~~-l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vi~   77 (192)
T d1ozha3           3 FALHPLRIVRAMQDIV----NSDVTLTVDMGSFHIWIARY-LYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVS   77 (192)
T ss_dssp             SSBCHHHHHHHHHHHC----CTTEEEEECSSHHHHHHHHT-GGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEE
T ss_pred             CCcCHHHHHHHHHHhC----CCCcEEEEcCcHHHHHHHHh-cccCCCceeecccccccccccccchhHHHhhccccccee
Confidence            5789999999999998    9999999994 456666664 577889999999999999999999999999999999999


Q ss_pred             EEcchhccCChHHHHHHHHcCcccccC
Q 011590          456 VEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       456 ~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++|||||+|+.+||+|++||++|+++|
T Consensus        78 i~GDG~f~~~~~el~t~~~~~l~~~ii  104 (192)
T d1ozha3          78 VSGDGGFLQSSMELETAVRLKANVLHL  104 (192)
T ss_dssp             EEEHHHHHHHTTHHHHHHHHTCCEEEE
T ss_pred             ecccccccchhhhHHHHhhhcCceeEE
Confidence            999999999999999999999999864

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.85  E-value=4.9e-22  Score=179.56  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=90.3

Q ss_pred             CCCCcccHHHHHHHHHhcc-CCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEE
Q 011590          377 VPFNFMTPMRIIRDAILGV-GSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVV  454 (482)
Q Consensus       377 ~~~~~~~~~~~l~~~l~~~-~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi  454 (482)
                      +++.+..+++.|+++++.. .|+|+++++|++ +..|. ..+++..+|++|+.+.++|+|||++|+|||+++|+|+++||
T Consensus         6 d~~~~~~v~~~l~~~~~~~~~p~d~iiv~d~G~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~~a~p~~~Vv   84 (198)
T d2ihta3           6 DGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYG-VLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTF   84 (198)
T ss_dssp             SSBCHHHHHHHHHHHHHHHSCTTCCEEEECSSHHHHHH-HHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEE
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCEEEEEcCcHHHHHH-HHHcCcCCCCeEEecCCcccchhHHHHHHHHhhhhcccceE
Confidence            3566677788888887543 277899999955 45554 45678899999999999999999999999999999999999


Q ss_pred             EEEcchhccCChHHHHHHHHcCcccccC
Q 011590          455 AVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       455 ~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +++|||||+|++|||+|++|+++||++|
T Consensus        85 ~i~GDGsf~~~~~el~t~~~~~lpi~iv  112 (198)
T d2ihta3          85 LIAGDGGFHSNSSDLETIARLNLPIVTV  112 (198)
T ss_dssp             EEEEHHHHHHTGGGHHHHHHHTCCCEEE
T ss_pred             eecccccccccchhhhhhhhhhhhhhHH
Confidence            9999999999999999999999999864

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.84  E-value=6.4e-22  Score=178.72  Aligned_cols=102  Identities=19%  Similarity=0.233  Sum_probs=89.7

Q ss_pred             CCCCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEE
Q 011590          376 VVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVA  455 (482)
Q Consensus       376 ~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~  455 (482)
                      +.++++.++++.|++.+    |+++|++.|.++..++..+ +....+++++.+.++|+||+++|+|+|+++|.|+|+||+
T Consensus         2 ~g~l~~~~~~~~l~~~l----~~d~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~   76 (196)
T d1ovma3           2 DGSLTQENFWRTLQTFI----RPGDIILADQGTSAFGAID-LRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIV   76 (196)
T ss_dssp             CSBCCHHHHHHHHHHHC----CTTCEEEECTTHHHHHHTT-CCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEE
T ss_pred             CCccCHHHHHHHHHhhC----CCCCEEEEcCCHhHHHHHH-hccCCCCeEEeCCCCccccccchhhHHHHHhhhccceec
Confidence            46899999999999999    9999999995543334443 455667789999999999999999999999999999999


Q ss_pred             EEcchhccCChHHHHHHHHcCcccccC
Q 011590          456 VEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       456 ~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++|||||+|++|||+|++|+++|+++|
T Consensus        77 i~GDG~f~~~~~eL~ta~~~~l~i~ii  103 (196)
T d1ovma3          77 LTGDGAAQLTIQELGSMLRDKQHPIIL  103 (196)
T ss_dssp             EEEHHHHHHHTTHHHHHHHTTCCCEEE
T ss_pred             ccccccceeecccccccccccccceEE
Confidence            999999999999999999999999764

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=1.3e-21  Score=174.75  Aligned_cols=102  Identities=23%  Similarity=0.227  Sum_probs=89.3

Q ss_pred             CCCCCCcccHHHHHHHHHhccCCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcE
Q 011590          375 DVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLV  453 (482)
Q Consensus       375 ~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~v  453 (482)
                      +..++++.++++.|++.+    |+|+|++.|++ +..++ ..++....|++++.+ ++|+||+++|+|+|+++|+|+++|
T Consensus         8 ~~~~i~p~~~~~~l~~~l----~~d~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~-~~g~mG~~~p~AiGa~la~p~~~v   81 (183)
T d1q6za3           8 DAGRLHPETVFDTLNDMA----PENAIYLNESTSTTAQM-WQRLNMRNPGSYYFC-AAGGLGFALPAAIGVQLAEPERQV   81 (183)
T ss_dssp             CSSSBCHHHHHHHHHHHS----CTTCEEEEECTTSHHHH-HHHCCCCSSSCEEEC-TTCCTTSHHHHHHHHHHHCTTSCE
T ss_pred             CCCCCCHHHHHHHHHHhC----CCCcEEEEcCCchHHHH-HHHHhhccccccccc-cCCCcccchhHHHhhhhhccccce
Confidence            456899999999999998    99999998854 45555 445677888888876 579999999999999999999999


Q ss_pred             EEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          454 VAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       454 i~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+++|||||+|+.|||+|++||++|+++|
T Consensus        82 v~i~GDG~f~~~~~el~ta~~~~lpv~~i  110 (183)
T d1q6za3          82 IAVIGDGSANYSISALWTAAQYNIPTIFV  110 (183)
T ss_dssp             EEEEEHHHHTTTGGGHHHHHHHTCCCEEE
T ss_pred             EEeccccccccccHHHHHHHHhCCCEEEE
Confidence            99999999999999999999999998754

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=99.83  E-value=1e-21  Score=175.44  Aligned_cols=105  Identities=44%  Similarity=0.773  Sum_probs=93.8

Q ss_pred             CCCCCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEE
Q 011590          375 DVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVV  454 (482)
Q Consensus       375 ~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi  454 (482)
                      +++.+++..+++.|++++..  .+|.|+++||+++.++.+.+++..+|++|+.++++|+|||++|+|+|++ ++|+|+|+
T Consensus         2 P~g~~~~~~~~~~l~~~~~~--~~D~iiv~dgg~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~-a~~~~~vv   78 (183)
T d2ji7a3           2 PSGMMNYSNSLGVVRDFMLA--NPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAA-AVTGKPVI   78 (183)
T ss_dssp             CTTCBCHHHHHHHHHHHHHH--CCSSEEEEESSHHHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHH-HHHCSCEE
T ss_pred             CCCcCCHHHHHHHHHHHHhc--CCCEEEEECchhHHHHHHHHhccCCCCcEEecCCccccccccchhhhhh-cCCcceEE
Confidence            34678899999999999843  3478999998888888888889999999999999999999999999887 56899999


Q ss_pred             EEEcchhccCChHHHHHHHHcCcccccC
Q 011590          455 AVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       455 ~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      +|+|||||+|++|||+|++|+++||++|
T Consensus        79 ~i~GDGsf~~~~~el~ta~~~~l~i~ii  106 (183)
T d2ji7a3          79 AVEGDSAFGFSGMELETICRYNLPVTVI  106 (183)
T ss_dssp             EEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred             EEEcCcchhhchhhhhhhhhccccchhh
Confidence            9999999999999999999999999875

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1e-20  Score=170.90  Aligned_cols=101  Identities=15%  Similarity=0.299  Sum_probs=85.6

Q ss_pred             CCCCCcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhh----CCC
Q 011590          376 VVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIA----CPE  450 (482)
Q Consensus       376 ~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala----~p~  450 (482)
                      +.|+++.++++.|++.+    |+++|++.| |.+.+|..+ + ....+..++.+.++|+|||++|+|+|+|+|    +|+
T Consensus         2 ~~Pl~~~~~~~~l~~~l----~~~~ivv~d~G~~~~~~~~-~-~~~~~~~~~~~~~~g~mG~~l~~aiG~alaa~~~~p~   75 (196)
T d1pvda3           2 STPLKQEWMWNQLGNFL----QEGDVVIAETGTSAFGINQ-T-TFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPK   75 (196)
T ss_dssp             TSBCCHHHHHHHHTTTC----CTTCEEEECTTHHHHHGGG-C-CCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTT
T ss_pred             cCCcCHHHHHHHHHhhC----CCCCEEEECCcHhHHHHHH-h-hccCCCEEEccCCcCcccccccchhHHHHHHHhcCCC
Confidence            36889999999999888    999999998 555555433 2 333456788888999999999999998887    699


Q ss_pred             CcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590          451 RLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       451 ~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~  482 (482)
                      |+||+|+|||||+|+.|||+|++||++|+++|
T Consensus        76 ~~Vv~i~GDGsf~m~~~eL~ta~~~~l~i~~i  107 (196)
T d1pvda3          76 KRVILFIGDGSLQLTVQEISTMIRWGLKPYLF  107 (196)
T ss_dssp             CCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred             CceeeccCccccccccccccccccccccceEE
Confidence            99999999999999999999999999998864

>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: ACDE2-like
domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.70  E-value=9.3e-19  Score=151.61  Aligned_cols=132  Identities=14%  Similarity=0.170  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC------CCCCCCCCCCCcccchHHH-------
Q 011590          206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP------MGKGLLPDTHPLAATAARS-------  272 (482)
Q Consensus       206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~------~~~g~~~~~hp~~~G~~~~-------  272 (482)
                      +.+++++++|++||||+|++|+|+..  +..++.++++++++||++|.      ++||++|++||+++|..+.       
T Consensus         7 e~~~~~a~~i~~AkrPvii~G~g~~~--~~~e~~~~~~~~~ipv~~T~~~~~~~~gkg~~~~~~~~~~G~~g~~g~~~~n   84 (158)
T d1ytla1           7 EKGKPVANMIKKAKRPLLIVGPDMTD--EMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDW   84 (158)
T ss_dssp             CCHHHHHHHHHHCSSEEEEECSCCCH--HHHHHHHHHHTSSSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhCCCCEEEECcChHH--hHHHHHHHHHHhCcCEEecccccccccccCCCCCCCccccccccccCcHHHH
Confidence            45889999999999999999999964  56678999999999999986      5899999999999986432       


Q ss_pred             H---hhhcCCEEEEecCccCccc-ccCCCCCCCCCCcEEEEeCCchhhcc-cCCceeEeccHHHHHHHHHHhhh
Q 011590          273 L---AIGQCDVALVVGARLNWLL-HFGEPPKWSKDVKFVLVDVCKEEIEL-RKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       273 ~---~l~~aDlvl~iG~~~~~~~-~~g~~~~~~~~~~ii~id~d~~~~~~-~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      .   ++++|||||++|+++++.+ ..+....|.++.++|+||.+...... ..+  .+..+...+++.|.+.++
T Consensus        85 ~a~~~~~~aDLvi~iG~~~~~~~~~~~~~~~~~~~~k~I~Id~~~~~~~~~~~~--~l~~~~~~~~~~L~~ll~  156 (158)
T d1ytla1          85 KGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFG--NLWKKEEDYLKLLDEILA  156 (158)
T ss_dssp             CCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECSSSCCTTSSEECC--CCGGGHHHHHHHHHHHHH
T ss_pred             HHhhcccCcCEEEEECCcccchhhccccccccCCCCeEEEEcCCccccccccch--hhhhhHHHHHHHHHHHHh
Confidence            2   3458999999999986432 12333446788999999876533321 122  234566667766666553

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR Pyr module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I
species: Desulfovibrio africanus [TaxId: 873]

Probab=98.73  E-value=6.7e-08  Score=88.98  Aligned_cols=157  Identities=11%  Similarity=-0.028  Sum_probs=116.5

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-----------CCCcEEecCchHHHHHHHHHHHhHhCCcEEEE
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-----------LGVRFIAFHNEQSAGYAASAYGYLTGKPGILL   81 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-----------~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~   81 (482)
                      .++|.++++... ..|++.+++.|+++..++.+.+.+           .+++++...+|.+|+.||.|++....|  +..
T Consensus         6 ~~~GneAva~~a-~a~~~v~~~YPiTPss~i~e~l~~~~~~g~~~~~~~~~~~~~~e~E~~A~~~~~Ga~~aG~r--~~t   82 (257)
T d2c42a1           6 TTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGAL--TTT   82 (257)
T ss_dssp             EEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCC--EEE
T ss_pred             ecchHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHHHHcCCcccCCCceEEEEecccchhHHHHHHHHhcCCC--eEE
Confidence            467999999865 589999999999998888887742           236899999999999999999987554  556


Q ss_pred             EcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcC
Q 011590           82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSG  161 (482)
Q Consensus        82 ~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~  161 (482)
                      .|+|||+.=+...|..|...++|+++...+++....+.....+.+..-..+...--.....++.++.+..-.|++.|...
T Consensus        83 ~ts~~Gl~~m~e~l~~a~~~~~P~V~~v~~r~~~~~~~~~~~~q~d~~~~~~~g~~~l~~~s~QEa~d~~~~A~~lae~~  162 (257)
T d2c42a1          83 FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQDIYAARQTGFAMLASSSVQEAHDMALVAHLAAIES  162 (257)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCCSHHHHTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHH
T ss_pred             EecchHHHHHHHHHHHHHhcCCceEEEEEecCCCCCCCccccchHHHHHHHhcceEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            67899999888999999999999988887764433222211222223233333222344667888999999999999876


Q ss_pred             CCceEEEEcCcc
Q 011590          162 RPGGCYLDLPTD  173 (482)
Q Consensus       162 ~~gPv~l~iP~d  173 (482)
                      + -||.+...-.
T Consensus       163 ~-~Pv~~~~Dg~  173 (257)
T d2c42a1         163 N-VPFMHFFDGF  173 (257)
T ss_dssp             C-CCEEEEEETT
T ss_pred             C-CCEEEEeccc
Confidence            6 5888876543

>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: C-terminal domain of the electron transfer flavoprotein alpha subunit
domain: C-terminal domain of the electron transfer flavoprotein alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.2e-06  Score=65.14  Aligned_cols=114  Identities=16%  Similarity=0.190  Sum_probs=86.7

Q ss_pred             CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCC
Q 011590          220 KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP  297 (482)
Q Consensus       220 rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~  297 (482)
                      +.++-+|.|....+..+.+.+||+++|+-|-+|...  .|.+|.+  ..+|..+...  ..++.|++|.+-..+...|  
T Consensus         9 ~ivV~~GrG~~~~e~~~~~~~lA~~lga~vg~SR~~vd~gw~~~~--~qIG~SG~~V--~P~lyia~GISGa~QH~~G--   82 (124)
T d1efva2           9 KVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPND--MQVGQTGKIV--APELYIAVGISGAIQHLAG--   82 (124)
T ss_dssp             SEEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSTTSBCC--CCSEEEEESCCCCHHHHTT--
T ss_pred             CEEEECCCCcCCHHHHHHHHHHHHHhCCeeeEeehhhhCCCcccc--eeecccceEe--CCcEEEEecchhHHHHHhh--
Confidence            456666777766678899999999999999988642  4666554  4566544332  6899999998776544444  


Q ss_pred             CCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          298 PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       298 ~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                        ......+|-||.|+...=+...|..+++|..++|++|.+.++
T Consensus        83 --i~~s~~IvAIN~D~~ApIf~~aD~giVgD~~evlp~L~e~lk  124 (124)
T d1efva2          83 --MKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK  124 (124)
T ss_dssp             --TTTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred             --ccCCCEEEEEeCCCCCCccccCCEEEeccHHHHHHHHHHHhC
Confidence              345568999999998776667799999999999999998763

>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: C-terminal domain of the electron transfer flavoprotein alpha subunit
domain: C-terminal domain of the electron transfer flavoprotein alpha subunit
species: Methylophilus methylotrophus [TaxId: 17]

Probab=97.61  E-value=3.5e-05  Score=60.57  Aligned_cols=114  Identities=14%  Similarity=0.233  Sum_probs=83.0

Q ss_pred             CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCC
Q 011590          220 KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP  297 (482)
Q Consensus       220 rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~  297 (482)
                      +.++-+|.|....+..+.+++||+.+|+-+-+|...  .|.+|.+  ..+|..+ ..+...+|.|++|.+=..+...|  
T Consensus         8 ~vVV~~GrG~~~~e~~~~~~eLA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG-~~v~~P~lYia~GISGa~QH~~G--   82 (123)
T d3clsd2           8 DFIMSIGRGIGEETNVEQFRELADEAGATLCCSCPIADAGWLPKS--RQVGQSG-KVVGSCKLYVAMGISGSIQHMAG--   82 (123)
T ss_dssp             SEEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSSSS-BCCTTCSEEEEESCCCCHHHHHH--
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHhhcceeeccHHHHcCCCChh--heEecCC-ccccCCcEEEEEcccchHHHHHh--
Confidence            345556667766678899999999999999887542  4666553  3455433 12335799999998765443333  


Q ss_pred             CCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhh
Q 011590          298 PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI  340 (482)
Q Consensus       298 ~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l  340 (482)
                        ......||-||.|+...=+...|..+++|..++|++|.+++
T Consensus        83 --m~~s~~IVAIN~D~~ApIf~~adygiVgD~~evlp~L~~~l  123 (123)
T d3clsd2          83 --MKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL  123 (123)
T ss_dssp             --HTTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred             --ccCCCEEEEEcCCCCCCchhhCCEEEEeeHHHHHHHHHhhC
Confidence              24456799999999877666779999999999999998864

>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: AF0112, Sir2 homolog (Sir2-AF2)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.96  E-value=0.0011  Score=60.05  Aligned_cols=69  Identities=23%  Similarity=0.277  Sum_probs=49.9

Q ss_pred             HhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          273 LAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       273 ~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ..+++||++|+||+++........+.. -..+.++|.||.++.... ...++.+.+|++++|.+|++.+++
T Consensus       179 ~~~~~~dl~LviGTSl~V~p~~~~~~~a~~~~~~~i~IN~~~~~~d-~~~d~~i~g~~~evl~~l~~~l~~  248 (252)
T d1ma3a_         179 EEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMAD-PIFDVKIIGKAGEVLPKIVEEVKR  248 (252)
T ss_dssp             HHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTG-GGCSEEEESCHHHHHHHHHHHHHH
T ss_pred             HHhhCCCeEEEecCCceeeechHHHHHHHHcCCeEEEECCCCCCCC-CceeEEEECCHHHHHHHHHHHHHH
Confidence            457889999999999875432221110 024688999999886543 233789999999999999988764

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.0037  Score=53.90  Aligned_cols=159  Identities=7%  Similarity=0.008  Sum_probs=97.2

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHH---H--------HH-hCCCcEEe-cCchHHHHHHHHHHHhHhCCcE
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN---R--------AV-QLGVRFIA-FHNEQSAGYAASAYGYLTGKPG   78 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~---a--------l~-~~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~   78 (482)
                      +++.....+...|.+..-+.+.|...-.......   .        +. +..=++|. ---|++++.+|.|.++..+++-
T Consensus        20 aTR~a~g~~L~~la~~~p~lv~~sADL~~St~t~~~~~~~f~~~~~~~~~~p~R~i~~GIaEq~m~~iaaGlA~~G~~~~   99 (197)
T d1gpua2          20 ATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYK   99 (197)
T ss_dssp             CHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHCTTCE
T ss_pred             chHHHHHHHHHHHHhhChhhcccccccCCccccccccccccccccccccCCCCceeecccchhhHHHHHHHHHHcCCcee
Confidence            4445555556666666566665555532221110   0        00 01125553 3679999999999998744344


Q ss_pred             EEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC-CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHH
Q 011590           79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLER  157 (482)
Q Consensus        79 v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~  157 (482)
                      .+..|..+=...+...+..+-..+.|++++........-. -..||.++++.++|.+-.-....  |.+..+. ..|++.
T Consensus       100 p~~~t~~~f~~~~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn~~v~~--PaD~~e~-~~a~~~  176 (197)
T d1gpua2         100 PYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWR--PADGNEV-SAAYKN  176 (197)
T ss_dssp             EEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEEC--CCSHHHH-HHHHHH
T ss_pred             EEEEeehhhhhhhHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHHHhcCCCcEEEe--cCCHHHH-HHHHHH
Confidence            5555555444455556666666678888776554443322 34689999999999997655443  4444333 467777


Q ss_pred             hhcCCCceEEEEcCcc
Q 011590          158 AVSGRPGGCYLDLPTD  173 (482)
Q Consensus       158 a~~~~~gPv~l~iP~d  173 (482)
                      |.....||+||.++..
T Consensus       177 a~~~~~gP~yiRl~R~  192 (197)
T d1gpua2         177 SLESKHTPSIIALSRQ  192 (197)
T ss_dssp             HHHCSSCCEEEECCSS
T ss_pred             HHHcCCCCEEEEecCC
Confidence            7665669999999864

>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.70  E-value=0.0076  Score=51.58  Aligned_cols=157  Identities=8%  Similarity=-0.024  Sum_probs=93.8

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHH------HHHHh-CCCcEEe-cCchHHHHHHHHHHHhH-hCCcEEEEEc
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLA------NRAVQ-LGVRFIA-FHNEQSAGYAASAYGYL-TGKPGILLTV   83 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~------~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~-tgk~~v~~~t   83 (482)
                      ++.........|.+..-+-+.+..........      +...+ ..-++|. ---|++++.+|.|.+.- +|.. .+..|
T Consensus        21 tR~a~g~~L~~la~~~~~iv~~sADL~~St~t~~~~~~~~~~~~~p~r~i~~GIaEq~m~~iAaGlA~~~~G~~-p~~~t   99 (192)
T d1itza2          21 TRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFV-PYCAT   99 (192)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCE-EEEEE
T ss_pred             HHHHHHHHHHHHHhhCchhheeccccCCCcCcccccccccccccchhccceeceecchHHHHHHHHHHhcCCCE-EEEEE
Confidence            44555556666766665555555432211111      00111 1125553 36799999999999985 4543 33445


Q ss_pred             CChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590           84 SGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR  162 (482)
Q Consensus        84 ~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~  162 (482)
                      ..+=..-+-..+..+-..+.|++++........ ..-..||.++++.+++.+-.......  .+.. .+..+++.|....
T Consensus       100 f~~F~~~~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iPn~~v~~P--~d~~-e~~~~~~~a~~~~  176 (192)
T d1itza2         100 FFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRP--ADGN-ETAGAYKVAVLNR  176 (192)
T ss_dssp             EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECC--CSHH-HHHHHHHHHHHCT
T ss_pred             EhhhhhhccchhhhhccccccceEEEecCCcccccCCcccHHHHHHHHHhCcCCceEEec--CCHH-HHHHHHHHHHHcC
Confidence            555444455566666666777776665443333 22346899999999999987766553  3222 2356666666556


Q ss_pred             CceEEEEcCcc
Q 011590          163 PGGCYLDLPTD  173 (482)
Q Consensus       163 ~gPv~l~iP~d  173 (482)
                      .||+||.++..
T Consensus       177 ~gP~yiRl~R~  187 (192)
T d1itza2         177 KRPSILALSRQ  187 (192)
T ss_dssp             TSCEEEEECSS
T ss_pred             CCCEEEEEcCC
Confidence            69999999864

>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: Sirt2 histone deacetylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0018  Score=60.44  Aligned_cols=84  Identities=12%  Similarity=0.082  Sum_probs=54.7

Q ss_pred             CCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhc------------------c-
Q 011590          258 LLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE------------------L-  318 (482)
Q Consensus       258 ~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~------------------~-  318 (482)
                      .|-|.+|...-......+++||++|++||++..+.....+.....+...|.|+.++....                  . 
T Consensus       201 ~FGE~lP~~~~~~a~~~~~~aDllIViGTSL~V~Paa~l~~~a~~~~~~v~IN~e~~~~~~~~~~~~~~~~~~~~~~~~~  280 (323)
T d1j8fa_         201 FFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKK  280 (323)
T ss_dssp             CBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTT
T ss_pred             EcCCCCcHHHHHHHHHHHhCCCEEEEECCCCeecCHHHHHHHHHcCCCEEEEECCCCCCCCccchhhccccccccccccC
Confidence            455555533323355678899999999999865432222222344555666988764321                  0 


Q ss_pred             cCCceeEeccHHHHHHHHHHhhh
Q 011590          319 RKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       319 ~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ...|+.+.||...++..|.+.+.
T Consensus       281 ~~~D~~~~gdcd~~~~~l~~~lg  303 (323)
T d1j8fa_         281 AYRDVAWLGECDQGCLALAELLG  303 (323)
T ss_dssp             CCSEEEEESCHHHHHHHHHHHTT
T ss_pred             CcceEEEccCHHHHHHHHHHHcC
Confidence            12389999999999999999875

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.018  Score=49.25  Aligned_cols=158  Identities=11%  Similarity=-0.018  Sum_probs=94.4

Q ss_pred             cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHH-----HHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590           12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLA-----NRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVS   84 (482)
Q Consensus        12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~-----~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~   84 (482)
                      +++..+....+.|.+.--+.+-|...-......     +.+.+ ..=++|. ---|++++.+|.|.+.-.|. ..+..|.
T Consensus        24 ATR~asg~~L~~la~~~p~liggsADL~~St~t~~~~~~~f~~~~p~r~i~~GIaEq~M~~iAaGlA~~g~~-~p~~stf  102 (195)
T d2r8oa1          24 ASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGF-LPYTSTF  102 (195)
T ss_dssp             EHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSC-EEEEEEE
T ss_pred             chHHHHHHHHHHHHhhcccceecccccccccccccccccccccCCCCCeeeeeeehhhHHHHHHHHHhhCCc-eEEeecc
Confidence            455666666777766654555443322111100     11111 1224553 46799999999999876554 4444555


Q ss_pred             ChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590           85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP  163 (482)
Q Consensus        85 GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~  163 (482)
                      .+=..-+...+..+-..+.+++++........ ..-..||.++++.++|.+-......  |.+..+ +..|++.|+....
T Consensus       103 ~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iEDia~lR~iPn~~v~~--P~D~~E-~~~a~~~a~~~~~  179 (195)
T d2r8oa1         103 LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWR--PCDQVE-SAVAWKYGVERQD  179 (195)
T ss_dssp             GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEEC--CSSHHH-HHHHHHHHHHCSS
T ss_pred             eeeeccccchhhccccccccceeeeccccccccccchhhHHHHHHHHHHhhCCcEEEe--cCCHHH-HHHHHHHHHHcCC
Confidence            55555566777775555555555543322222 2224589999999999998766553  444333 3677777776666


Q ss_pred             ceEEEEcCcc
Q 011590          164 GGCYLDLPTD  173 (482)
Q Consensus       164 gPv~l~iP~d  173 (482)
                      ||+||.++..
T Consensus       180 gP~ylRl~R~  189 (195)
T d2r8oa1         180 GPTALILSRQ  189 (195)
T ss_dssp             SCEEEECCSS
T ss_pred             CCEEEEecCC
Confidence            9999999874

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=96.42  E-value=0.01  Score=50.49  Aligned_cols=150  Identities=12%  Similarity=-0.003  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-C-CCcEEecCchHH---HHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590           17 NTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-L-GVRFIAFHNEQS---AGYAASAYGYLTGKPGILLTVSGPGCVHG   91 (482)
Q Consensus        17 ~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~-~i~~v~~~~E~~---A~~~A~g~ar~tgk~~v~~~t~GpG~~N~   91 (482)
                      -++|-+.+.+. =+.++..-|+....+...+.. . .-+++..-.-.+   +.-+|.|..-..+|+.++++--| ++.-.
T Consensus        12 ~~~l~~~~~~~-~D~iiv~dgg~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~~~~~vv~i~GDG-sf~~~   89 (183)
T d2ji7a3          12 LGVVRDFMLAN-PDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAVEGDS-AFGFS   89 (183)
T ss_dssp             HHHHHHHHHHC-CSSEEEEESSHHHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHHHHHCSCEEEEEEHH-HHHTT
T ss_pred             HHHHHHHHhcC-CCEEEEECchhHHHHHHHHhccCCCCcEEecCCccccccccchhhhhhcCCcceEEEEEcCc-chhhc
Confidence            34444445443 367777777766666655432 2 235554322111   12334455546789988877555 34555


Q ss_pred             HHHHHHhhhCCCcEEEEeCCCCcccC--------CC---CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590           92 LAGLSNGMINTWPIVMISGSCDQKDF--------GR---GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS  160 (482)
Q Consensus        92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~---~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~  160 (482)
                      +..|..|...++|+++|.-.-.....        ++   ..++..|...+.+.+.-...++++++++.+.+++|++    
T Consensus        90 ~~el~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~----  165 (183)
T d2ji7a3          90 GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVA----  165 (183)
T ss_dssp             GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHH----
T ss_pred             hhhhhhhhhccccchhhhhhhhhhhhhhhccccccccccccccccchhhhhhhcCCcEEEeCCHHHHHHHHHHHHh----
Confidence            67899999999999999876532111        10   1234457777888887777889988887777776664    


Q ss_pred             CCCceEEEEcCcc
Q 011590          161 GRPGGCYLDLPTD  173 (482)
Q Consensus       161 ~~~gPv~l~iP~d  173 (482)
                      . .||+.|++..|
T Consensus       166 ~-~~p~lIev~id  177 (183)
T d2ji7a3         166 S-GKPCLINAMID  177 (183)
T ss_dssp             H-TSCEEEEEEBC
T ss_pred             C-CCcEEEEEEEC
Confidence            2 48999999876

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=96.38  E-value=0.016  Score=49.30  Aligned_cols=116  Identities=13%  Similarity=0.040  Sum_probs=80.1

Q ss_pred             cEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC-CCCCCCcCHhhh
Q 011590           53 RFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEA  130 (482)
Q Consensus        53 ~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q~~d~~~~  130 (482)
                      ++|.+ --|++++.+|.|.+...|.+ .+..|..+=+.-+...+..+-..+.|++++........-. -..||.++++.+
T Consensus        65 r~i~~GIaEqnm~~iAaGla~~~g~~-p~~~t~~~F~~r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~ieDla~  143 (190)
T d1r9ja1          65 RYIRFGVREHAMCAILNGLDAHDGII-PFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAA  143 (190)
T ss_dssp             CEEECCSCHHHHHHHHHHHHHHSSCE-EEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH
T ss_pred             CeeeeccchhhHHHHHHHHHHcCCcc-eEEecchhhhccchHHHHHhcccCCceEEEEecCccccCCCCcchhHHHHHHH
Confidence            67643 67999999898998776654 4445556666667777777666677877766555443322 345899999999


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +|.+-......  |.+..+ +..+++.|....+||+||.++.
T Consensus       144 ~R~iPn~~V~~--PaD~~E-~~~al~~a~~~~~gP~yiRl~R  182 (190)
T d1r9ja1         144 LRAMPNLQVIR--PSDQTE-TSGAWAVALSSIHTPTVLCLSR  182 (190)
T ss_dssp             HHHSTTCEEEC--CSSHHH-HHHHHHHHHHCTTCCEEEECCS
T ss_pred             HHhcCCEEEEe--cCCHHH-HHHHHHHHHHcCCCCEEEEecC
Confidence            99987765543  343333 3567777766666999999986

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.31  E-value=0.042  Score=46.82  Aligned_cols=155  Identities=8%  Similarity=0.061  Sum_probs=94.8

Q ss_pred             CCcHHHHHHHHH-HhcCCCEEEecCCcCh-HHHHHHHHhC-CCcEEecCch---HHHHHHHHHHHhHh-CCcEEEEEcCC
Q 011590           13 QIDGNTLAAKSL-SLFGATHMFGVVGIPV-TSLANRAVQL-GVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSG   85 (482)
Q Consensus        13 ~~~~~~~l~~~L-~~~Gv~~vFgvpG~~~-~~l~~al~~~-~i~~v~~~~E---~~A~~~A~g~ar~t-gk~~v~~~t~G   85 (482)
                      +++-.+ +++.| +...=+.++..-++.. ......+... .-+++....=   ..+.-+|.|.+.+. +|+.++++.-|
T Consensus         4 pi~P~~-v~~~L~~~l~~d~ii~~d~G~~~~~~~~~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vi~i~GDG   82 (192)
T d1ozha3           4 ALHPLR-IVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDG   82 (192)
T ss_dssp             SBCHHH-HHHHHHHHCCTTEEEEECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHH
T ss_pred             CcCHHH-HHHHHHHhCCCCcEEEEcCcHHHHHHHHhcccCCCceeecccccccccccccchhHHHhhcccccceeecccc
Confidence            344444 34444 3334466666544432 2333334433 3344443211   13445677877776 67777777655


Q ss_pred             hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------C---CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590           86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G---RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQ  153 (482)
Q Consensus        86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~---~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~  153 (482)
                       ++...+..|..+...++|+++|.-+-.....         +   .-.+..+|...+++.+--...++++++++.+.+++
T Consensus        83 -~f~~~~~el~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~  161 (192)
T d1ozha3          83 -GFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRA  161 (192)
T ss_dssp             -HHHHHTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHH
T ss_pred             -cccchhhhHHHHhhhcCceeEEEEcCCCccccccccccccCccccCcCCCCCHHHHHHHhccccEEeCCHHHHHHHHHH
Confidence             4555667899999999999998754322110         0   01245678888888887777899999987766666


Q ss_pred             HHHHhhcCCCceEEEEcCcch
Q 011590          154 VLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       154 A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      |+    .. .||+.|+|..|-
T Consensus       162 a~----~~-~gp~lIeV~vd~  177 (192)
T d1ozha3         162 AM----DV-DGPAVVAIPVDY  177 (192)
T ss_dssp             HH----HS-SSCEEEEEEBCC
T ss_pred             HH----Hc-CCcEEEEEEeCC
Confidence            65    33 489999998764

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.27  E-value=0.0063  Score=53.76  Aligned_cols=158  Identities=12%  Similarity=0.066  Sum_probs=99.9

Q ss_pred             CCcHHHHHHHHHHhcCCCEEEecCCcChHHHH-HHHHh-CCCcEEecCch---HHHHHHHHHHHhHh-CCcEEEEEcCCh
Q 011590           13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLA-NRAVQ-LGVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSGP   86 (482)
Q Consensus        13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~-~al~~-~~i~~v~~~~E---~~A~~~A~g~ar~t-gk~~v~~~t~Gp   86 (482)
                      .++-.+++.+.-+...=+.++..=++.+..+. ..+.- ..-+++....=   ..+.-+|.|.+.+. +|+.+|++--| 
T Consensus         5 pi~p~~v~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~Vv~i~GDG-   83 (228)
T d2ez9a3           5 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDG-   83 (228)
T ss_dssp             BCCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHH-
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEEcCcHHHHHHHHHccCCCCceeeeecccccccccchhhhhhhhhhccceeEeecCCc-
Confidence            45555554444444455666666554444333 33332 23455543221   23445678888876 67877777655 


Q ss_pred             hhHhhHHHHHHhhhCCCcEEEEeCCCCcc----------cCCC---CCCCCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590           87 GCVHGLAGLSNGMINTWPIVMISGSCDQK----------DFGR---GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQ  153 (482)
Q Consensus        87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~----------~~~~---~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~  153 (482)
                      |+.-.+.-|.+|...++|+++|.-.-...          ..++   -.+...|-..+.+.+.-...++++++++...+++
T Consensus        84 ~f~m~~~EL~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~~~~~~~~~~l~~~d~~~iA~a~G~~~~~v~~~~el~~al~~  163 (228)
T d2ez9a3          84 GASMTMQDLATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQ  163 (228)
T ss_dssp             HHHHHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHH
T ss_pred             cccccchhhhhhccccCceEEEEeccccchhhhhhhhhcccCCcccccccCccHHhhccccccceEEeCCHHHHHHHHHH
Confidence            45555678999999999999998655322          0111   1245568888888888888999999999888887


Q ss_pred             HHHHhhcCCCceEEEEcCcch
Q 011590          154 VLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       154 A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      |.  |+.. .||+.|++..|-
T Consensus       164 a~--al~~-~~p~lIev~vd~  181 (228)
T d2ez9a3         164 AK--AIAQ-HEPVLIDAVITG  181 (228)
T ss_dssp             HH--HHTT-TSCEEEEEECCC
T ss_pred             HH--HHcC-CCeEEEEEEECC
Confidence            64  3343 489999988763

>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Transhydrogenase domain III (dIII)
domain: Transhydrogenase domain III (dIII)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.19  E-value=0.0075  Score=49.15  Aligned_cols=130  Identities=24%  Similarity=0.357  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch--------------
Q 011590          208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA--------------  269 (482)
Q Consensus       208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~--------------  269 (482)
                      .++++.+|..|++.+|+-|+|..-+.+...+.+|++.|   |.-|--- ..-.|-.|.    .+..              
T Consensus         8 ~~~~a~~l~~A~~ViIVPGYGmAvaqaQ~~v~el~~~L~~~g~~V~faIHPVAGRMPG----HmNVLLAEA~VpYd~v~e   83 (177)
T d1d4oa_           8 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPG----QLNVLLAEAGVPYDIVLE   83 (177)
T ss_dssp             HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTT----HHHHHHHHHTCCGGGEEE
T ss_pred             HHHHHHHHHhCCeEEEecChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeccccccccc----hhhhhhhhcCCCHHHHhC
Confidence            56788999999999999999998888877777776665   4433211 001111111    1111              


Q ss_pred             --HHHHhhhcCCEEEEecCccC---------cccccCCC--CCCCCCCcEEEEeCCch--hhc-----ccCC-ceeEecc
Q 011590          270 --ARSLAIGQCDVALVVGARLN---------WLLHFGEP--PKWSKDVKFVLVDVCKE--EIE-----LRKP-HLGLVGD  328 (482)
Q Consensus       270 --~~~~~l~~aDlvl~iG~~~~---------~~~~~g~~--~~~~~~~~ii~id~d~~--~~~-----~~~~-~~~i~~D  328 (482)
                        ..|.-+.+.|++|+||++-.         ....+|-+  .-| +-.++|.+-.+-.  ..+     +++. +.-+.||
T Consensus        84 mdeIN~~f~~~DvalVIGANDvVNPaA~~d~~SpI~GMPvl~v~-kak~viv~KRsm~~GyaGv~NpLF~~~nt~MlfGD  162 (177)
T d1d4oa_          84 MDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVW-KSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGD  162 (177)
T ss_dssp             HHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGG-GSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESC
T ss_pred             hHhhCcchhhccEEEEeccccccCCcccCCCCCccCCCceeEhh-hCCEEEEEECCCCCCccCCcCcceecCCcEEEech
Confidence              12345789999999997632         11123322  112 2234544433221  111     3343 5568899


Q ss_pred             HHHHHHHHHHhhhc
Q 011590          329 AKKVLEMINKEIKD  342 (482)
Q Consensus       329 ~~~~l~~L~~~l~~  342 (482)
                      ++..+++|...+++
T Consensus       163 Ak~~~~~l~~~lke  176 (177)
T d1d4oa_         163 AKKTCDALQAKVRE  176 (177)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988764

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.03  Score=49.19  Aligned_cols=157  Identities=12%  Similarity=0.019  Sum_probs=99.2

Q ss_pred             cHHHHHHHHHHhcCCCEEEecC-CcChHHHHHHHH-hCCCcEEecCch---HHHHHHHHHHHhHhC-CcEEEEEcCChhh
Q 011590           15 DGNTLAAKSLSLFGATHMFGVV-GIPVTSLANRAV-QLGVRFIAFHNE---QSAGYAASAYGYLTG-KPGILLTVSGPGC   88 (482)
Q Consensus        15 ~~~~~l~~~L~~~Gv~~vFgvp-G~~~~~l~~al~-~~~i~~v~~~~E---~~A~~~A~g~ar~tg-k~~v~~~t~GpG~   88 (482)
                      ...+.|-+.+.+.+-+.++..- |.+.+.....+. +..-+++....=   ..+.-+|.|.+.+.. |+.++++--| ++
T Consensus        15 ~~~~~L~~~~~~~~~d~ivv~D~G~~~~~~~~~~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA~p~r~Vv~i~GDG-sf   93 (227)
T d1t9ba3          15 TVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDA-SF   93 (227)
T ss_dssp             HHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHH-HH
T ss_pred             HHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHcCCCCCceEeeecccccchhhHHHHHHHHhcCCCCeEEEeCCCc-cc
Confidence            3556677777777767666544 333333333333 233455543322   234445667776654 5666665444 46


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC----CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHH
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVL  155 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~----~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~  155 (482)
                      ...+.-|..|...++|+++|.-.-....         .+.    -.+...|-..+.+.+.-+.+++++++++...|++|+
T Consensus        94 ~m~~~EL~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~  173 (227)
T d1t9ba3          94 NMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFV  173 (227)
T ss_dssp             HHHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHH
T ss_pred             ccchHHHHHHhhcCCceEEEEEecccccchhHHHhhhhccccccccCCCCCHHHHHhhcccceEeeCCHHHHHHHHHHHH
Confidence            6667789999999999999987654320         011    123345777888888888999999888777777765


Q ss_pred             HHhhcCCCceEEEEcCcchhcc
Q 011590          156 ERAVSGRPGGCYLDLPTDVLHQ  177 (482)
Q Consensus       156 ~~a~~~~~gPv~l~iP~dv~~~  177 (482)
                      .    . .||+.|++..|--..
T Consensus       174 ~----~-~~p~lieV~vd~~~~  190 (227)
T d1t9ba3         174 S----T-KGPVLLEVEVDKKVP  190 (227)
T ss_dssp             H----C-SSCEEEEEEBCSSCC
T ss_pred             H----C-CCCEEEEEEECCCCC
Confidence            3    3 489999999986443

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=96.06  E-value=0.0074  Score=53.37  Aligned_cols=108  Identities=9%  Similarity=0.063  Sum_probs=76.9

Q ss_pred             HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC---CCCCCcCHhhh
Q 011590           64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---GDFQELDQVEA  130 (482)
Q Consensus        64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~---~~~q~~d~~~~  130 (482)
                      --+|.|.+.+. +|+.+|++--| ++.-.++.|..|...++|+++|.-+-....         .++   -.+...|...+
T Consensus        58 lp~aiGa~~a~p~~~vv~i~GDG-sf~m~~~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~~~~~~~~~~d~~~l  136 (229)
T d2djia3          58 IPGGLGAKNTYPDRQVWNIIGDG-AFSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKI  136 (229)
T ss_dssp             HHHHHHHHHHCTTSCEEEEEEHH-HHHHHGGGHHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSCCCSCBCCCCCHHHH
T ss_pred             chhhhhhhhhccccccccccccc-ccccccchhhhhhcccCCceEEEeCCchhhhhhHHHHhhcCCCCcCcCCCCChhhh
Confidence            34566776655 67888777655 455455789999999999999887654321         011   12455788888


Q ss_pred             hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .+.+.-...++++++++.+.+.+|++....+  ||+.|++..|-
T Consensus       137 A~a~G~~~~~v~~~~el~~al~~A~~~~~~~--~p~lIev~v~~  178 (229)
T d2djia3         137 AEAQGAKGFTVSRIEDMDRVMAEAVAANKAG--HTVVIDCKITQ  178 (229)
T ss_dssp             HHHTTSEEEEECBHHHHHHHHHHHHHHHHTT--CCEEEEEECCS
T ss_pred             hhccCccEEEEecHHHhHHHHHHHHHhcCCC--CeEEEEEEeCC
Confidence            8888777889999999999999998754443  88999988664

>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Transhydrogenase domain III (dIII)
domain: Transhydrogenase domain III (dIII)
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.86  E-value=0.012  Score=48.05  Aligned_cols=128  Identities=25%  Similarity=0.301  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch--------------
Q 011590          208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA--------------  269 (482)
Q Consensus       208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~--------------  269 (482)
                      .++++.+|..|++.+|+-|+|..-+.+...+.+|++.|   |+-|--. ..-.|-.|.    .+..              
T Consensus        13 a~d~a~~L~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~g~~V~faIHPVAGRMPG----HmNVLLAEa~VpYd~v~e   88 (180)
T d1pnoa_          13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPG----HMNVLLAEANVPYDEVFE   88 (180)
T ss_dssp             HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTT----HHHHHHHHTTCCGGGEEE
T ss_pred             HHHHHHHHHcCCeEEEECCchHHHHHHHHHHHHHHHHHHhcCcceEEEeehhhhhhhc----chhheeeeecCCHHHHcC
Confidence            56789999999999999999998888888777777766   4443211 111111111    1111              


Q ss_pred             --HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCCc--hhhc-----ccCC-ceeEecc
Q 011590          270 --ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVCK--EEIE-----LRKP-HLGLVGD  328 (482)
Q Consensus       270 --~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d~--~~~~-----~~~~-~~~i~~D  328 (482)
                        ..|.-+.+.|++|+||++-..         ...+|-+  .-| +..++|.+-.+-  ...+     ++.. +.-+.||
T Consensus        89 mdeiN~~f~~~Dv~lViGANDvVNPaA~~dp~spi~GMPvl~v~-kak~Viv~KRsm~~GyaGv~NpLF~~~nt~MlfGD  167 (180)
T d1pnoa_          89 LEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVE-KAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGD  167 (180)
T ss_dssp             HHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESC
T ss_pred             hhhhcchhhhccEEEEecccceeChhhhcCCCCcccCCceeeee-cCCEEEEEECCccCCcCCCCCcceEcCCcEEEech
Confidence              133457899999999976321         1112221  112 223444443322  1111     2333 5668999


Q ss_pred             HHHHHHHHHHhh
Q 011590          329 AKKVLEMINKEI  340 (482)
Q Consensus       329 ~~~~l~~L~~~l  340 (482)
                      ++..+++|...+
T Consensus       168 AK~~l~~l~~~l  179 (180)
T d1pnoa_         168 AKKMTEQIVQAM  179 (180)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998765

>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase sirtuin-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0025  Score=58.03  Aligned_cols=66  Identities=15%  Similarity=0.155  Sum_probs=46.7

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHH
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMIN  337 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~  337 (482)
                      ..+.+++||++|+|||++..+.....+... ..++++|.||.++.... ...++.+.+|+.++|++|+
T Consensus       200 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vv~IN~~~t~~d-~~~d~~i~g~~~~vL~~l~  266 (267)
T d2b4ya1         200 VDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPAT-NRFRFHFQGPCGTTLPEAL  266 (267)
T ss_dssp             HHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCCEEEEESSCCTTG-GGSSEEEESCHHHHHHHHT
T ss_pred             HHHhhhhCCeEEEECCCCeecCHHHHHHHHHHcCCcEEEEeCCCCCCC-CccCEEEeCCHHHHHHHHh
Confidence            446778999999999998653322211111 34688999999876543 2237999999999999875

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.74  E-value=0.0069  Score=52.30  Aligned_cols=153  Identities=12%  Similarity=0.001  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhcCC--CEEEecCCcChHHHHHHH-Hh-CCCcEEecCch---HHHHHHHHHHHhHh-CCcEEEEEcCChh
Q 011590           16 GNTLAAKSLSLFGA--THMFGVVGIPVTSLANRA-VQ-LGVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSGPG   87 (482)
Q Consensus        16 ~~~~l~~~L~~~Gv--~~vFgvpG~~~~~l~~al-~~-~~i~~v~~~~E---~~A~~~A~g~ar~t-gk~~v~~~t~GpG   87 (482)
                      .-+.+-+.|.+...  +.++..-.+....+.... .- ..-+++....=   ..+.-+|.|.+.+. +|+.+|++--| +
T Consensus        13 v~~~l~~~~~~~~~p~d~iiv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~~a~p~~~Vv~i~GDG-s   91 (198)
T d2ihta3          13 VIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDG-G   91 (198)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHH-H
T ss_pred             HHHHHHHHHHhccCCCCEEEEEcCcHHHHHHHHHcCcCCCCeEEecCCcccchhHHHHHHHHhhhhcccceEeecccc-c
Confidence            44555566665543  456655444333333222 22 23455543321   11345677877765 57788877666 4


Q ss_pred             hHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC----CCCCCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590           88 CVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQ  153 (482)
Q Consensus        88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~----~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~  153 (482)
                      +.-.+..|..+...++|+++|.-+-....          .+.    -.+...|...+.+.+.-...++++++++.+.+++
T Consensus        92 f~~~~~el~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~  171 (198)
T d2ihta3          92 FHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRK  171 (198)
T ss_dssp             HHHTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhhhHHHhhccccceEeeeeccccccccccccccCCcchhhhccccCceEEEeCCHHHHHHHHHH
Confidence            55666788888899999998887654220          011    1234567777888877777888887776555555


Q ss_pred             HHHHhhcCCCceEEEEcCcch
Q 011590          154 VLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       154 A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      |    ... .||+.|+|..|-
T Consensus       172 a----~~~-~~p~lIeV~vd~  187 (198)
T d2ihta3         172 G----AEL-GRPFLIEVPVNY  187 (198)
T ss_dssp             H----HTS-SSCEEEEEEBCC
T ss_pred             H----HhC-CCCEEEEEEcCC
Confidence            5    454 499999998873

>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: AF1676, Sir2 homolog (Sir2-AF1?)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.60  E-value=0.0036  Score=56.24  Aligned_cols=71  Identities=13%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD  342 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  342 (482)
                      ....++++|++|++|+++..+.....+... ..++++|.||.++..... ..++.|.+|+.++|++|.+.+.+
T Consensus       171 a~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~~i~IN~~~t~~d~-~~d~~i~g~a~e~L~~l~~~l~~  242 (249)
T d1m2ka_         171 AMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP-IADYSLRGKAGEVMDELVRHVRK  242 (249)
T ss_dssp             HHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG-GCSEEECSCHHHHHHHHHHHHHH
T ss_pred             HHHhcccCCEEEEECCCCeeeehhhHHHHHHHcCCeEEEECCCCCCCCC-cccEEEECCHHHHHHHHHHHHHH
Confidence            345678999999999998754322211111 357889999998765532 24789999999999999888754

>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase CobB
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0053  Score=54.60  Aligned_cols=70  Identities=11%  Similarity=0.076  Sum_probs=49.1

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ....+++||++|++|+++..+.....+... ..++++|.||.++...+. ..++.+.+++.++|++|.+++-
T Consensus       161 ~~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~iiiIN~~~t~~~~-~~~~~i~g~a~e~l~~l~~~l~  231 (235)
T d1s5pa_         161 IYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN-EFAEKYYGPASQVVPEFVEKLL  231 (235)
T ss_dssp             HHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC----CCSEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEEccCCcccCHHHHHHHHHHcCCeEEEECCCCCCCCC-cccEEEeCCHHHHHHHHHHHHH
Confidence            345778999999999998754322211111 256889999998765432 2378999999999999988764

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=95.44  E-value=0.0031  Score=59.16  Aligned_cols=52  Identities=17%  Similarity=0.144  Sum_probs=41.5

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCccccc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISS  481 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~~  481 (482)
                      ..|+||.|++.|+|.|++.+              +.+|++|+|||.++=...  .+..|.+++|.=++
T Consensus       112 stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi  179 (336)
T d1r9ja2         112 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLI  179 (336)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEE
T ss_pred             cccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHHhhcCCEE
Confidence            36999999999999999952              467999999999986544  57777788886443

>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: Hst2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.006  Score=56.01  Aligned_cols=67  Identities=21%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             hhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhh--c-ccCCceeEeccHHHHHHHHHHhhh
Q 011590          275 IGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI--E-LRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       275 l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~--~-~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      +.+||++|+||+++..+.....+...+++.++|.|+.++..-  . ....|+.|.+|+..++++|.+.|.
T Consensus       209 ~~~aDlllviGTSl~V~Pa~~l~~~a~~~~~~viIN~e~~~~~~~~~~~~Dl~I~g~~~~vl~~L~~~LG  278 (289)
T d1q1aa_         209 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG  278 (289)
T ss_dssp             -CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred             cccCCEEEEECCCceecCHHHHHHHHHcCCCEEEEeCCCCCCcccccCCcCEEEeCCHHHHHHHHHHHcC
Confidence            458999999999986532111112235567778899876421  1 223489999999999999999875

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.0045  Score=58.02  Aligned_cols=49  Identities=16%  Similarity=0.164  Sum_probs=40.0

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~  478 (482)
                      ..|+||.|++.|+|.|+|.+              +++|++|+|||.++=...  .+..|.+++|.
T Consensus       112 stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~  176 (335)
T d1gpua1         112 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG  176 (335)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCT
T ss_pred             CCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccC
Confidence            46999999999999999853              578999999999986543  46677788874

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0046  Score=57.86  Aligned_cols=51  Identities=20%  Similarity=0.132  Sum_probs=41.0

Q ss_pred             CCCcccchHHHHHHHhhhC--------------CCCcEEEEEcchhccCChH--HHHHHHHcCcccc
Q 011590          430 TWGTMGVGLGYCIAAAIAC--------------PERLVVAVEGDSGFGFSAV--EVEVWLSCIIMIS  480 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~--------------p~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~  480 (482)
                      ..|+||.|++.|+|.|++.              .+++|++|+|||.++=...  .+..+.+++|.=+
T Consensus       111 stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nL  177 (331)
T d2r8oa2         111 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKL  177 (331)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred             CcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccce
Confidence            4699999999999999884              2578999999999986543  5777778887543

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=95.08  E-value=0.018  Score=49.39  Aligned_cols=118  Identities=13%  Similarity=0.069  Sum_probs=71.8

Q ss_pred             CCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-----CC-CC
Q 011590           51 GVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FG-RG  120 (482)
Q Consensus        51 ~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-----~~-~~  120 (482)
                      +-+++....   =..+.-+|.|.+.+. +|+.+|++--| |+.-.+..|.+|...++|+++|.-+-....     .+ ..
T Consensus        43 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG-~f~~~~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~  121 (196)
T d1ovma3          43 DVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDG-AAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQ  121 (196)
T ss_dssp             SCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHH-HHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTC
T ss_pred             CCeEEeCCCCccccccchhhHHHHHhhhccceecccccc-cceeecccccccccccccceEEEEecCccccchhhhcccc
Confidence            445554331   224556788888876 78888887666 566667899999999999988886543210     11 11


Q ss_pred             C---CCCcCHhhhhcccc----ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590          121 D---FQELDQVEAVKPFS----KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       121 ~---~q~~d~~~~~~~~~----k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      .   ....|...+.+.+.    ...+++++++++.    +|++.+.... ||+.|++..|-
T Consensus       122 ~~~~~~~~~~~~~a~~~g~~~~~~~~~v~~~~el~----~al~~a~~~~-gp~lIev~~~~  177 (196)
T d1ovma3         122 RYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLA----DVLEKVAHHE-RLSLIEVMLPK  177 (196)
T ss_dssp             GGGCCCCCCGGGSTTTSCSSCCEEEEEECBHHHHH----HHHHHHTTCS-SEEEEEEECCT
T ss_pred             ccccccccccchhHHhcCccccceeEEEecHHHHH----HHHHHHHHCC-CcEEEEEEeCh
Confidence            1   12223333444432    2355677776654    5555555544 99999998763

>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase NpdA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.0049  Score=55.21  Aligned_cols=70  Identities=14%  Similarity=0.052  Sum_probs=50.0

Q ss_pred             HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590          271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK  341 (482)
Q Consensus       271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (482)
                      ....++++|++|++|+++..+.....+... ..++++|.||.++...+. ..++.+.+|+.++|+.|.+.+.
T Consensus       174 a~~~~~~~DlllviGTSl~V~p~~~l~~~a~~~g~~~i~IN~~~t~~d~-~~d~~i~g~~~e~l~~l~~~lg  244 (245)
T d1yc5a1         174 AIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD-IATLKYNMDVVEFARRVMEEGG  244 (245)
T ss_dssp             HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG-GCSEEECSCHHHHHHHHHHHHT
T ss_pred             HHHHhhcCCEEEEECCCeEEechhhhhHHHHHcCCeEEEECCCCCCCCc-ceeEEEeCCHHHHHHHHHHHcC
Confidence            345678999999999998754322211111 246789999998865432 3589999999999999998763

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.61  E-value=0.081  Score=45.40  Aligned_cols=156  Identities=13%  Similarity=0.047  Sum_probs=86.9

Q ss_pred             CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHH-hCCCcEEecCchHH---HHHHHHHHHhHh-CCcEEEEEcCChhh
Q 011590           14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHNEQS---AGYAASAYGYLT-GKPGILLTVSGPGC   88 (482)
Q Consensus        14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~-~~~i~~v~~~~E~~---A~~~A~g~ar~t-gk~~v~~~t~GpG~   88 (482)
                      ++-.+++-+.=+...=+.++..=++........+. .++-+++....=.+   +.-+|.|.+.+. +|+.+|++--| ++
T Consensus         3 l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGa~la~p~~~vv~i~GDG-sf   81 (204)
T d1zpda3           3 LVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDG-SF   81 (204)
T ss_dssp             CCHHHHHHHHHHTCCTTEEEEECSSHHHHHHHTCCCCTTCEEEECTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHH-HH
T ss_pred             CCHHHHHHHHHhhCCCCCEEEECchHhHHHHHHhCCCCCCeEEcCCCCcccchhhHHHHHHHHhCCCCceecccccc-ce
Confidence            33334433333333446666654443322222222 24566665543222   455678888876 67888877555 45


Q ss_pred             HhhHHHHHHhhhCCCcEEEEeCCCCccc----CCCC---CCCCcCHhhhh---------ccccceeeecCCcCcHHHHHH
Q 011590           89 VHGLAGLSNGMINTWPIVMISGSCDQKD----FGRG---DFQELDQVEAV---------KPFSKFAVKAKDITEVPKCVA  152 (482)
Q Consensus        89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----~~~~---~~q~~d~~~~~---------~~~~k~~~~~~~~~~~~~~l~  152 (482)
                      .-.+..|.+|...++|+++|.-.-....    ....   .....|-..+.         +....+..++++++++.+.++
T Consensus        82 ~m~~~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~~~~el~~al~  161 (204)
T d1zpda3          82 QLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIK  161 (204)
T ss_dssp             HHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHH
T ss_pred             eeeecccchhhhcccccceEEEecccccccceeccccccccchhhhhhhhhhcCcchhhhccCccEEEecCHHHHHHHHH
Confidence            5556789999999999999987654221    1111   11122322222         223446678888777666665


Q ss_pred             HHHHHhhcCCCceEEEEcCcch
Q 011590          153 QVLERAVSGRPGGCYLDLPTDV  174 (482)
Q Consensus       153 ~A~~~a~~~~~gPv~l~iP~dv  174 (482)
                      +|+    ....||+.|+|..|-
T Consensus       162 ~al----~~~~gp~lieV~vd~  179 (204)
T d1zpda3         162 VAL----ANTDGPTLIECFIGR  179 (204)
T ss_dssp             HHH----HCCSSCEEEEEECCT
T ss_pred             HHH----HcCCCcEEEEEEECc
Confidence            554    333599999998764

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.45  E-value=0.0091  Score=55.91  Aligned_cols=49  Identities=16%  Similarity=0.129  Sum_probs=39.7

Q ss_pred             CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590          430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM  478 (482)
Q Consensus       430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~  478 (482)
                      ..|+||.|++.|+|.|++.+              +.+|++++|||.++=...  .+..+.+++|.
T Consensus       116 stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~  180 (338)
T d1itza1         116 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLG  180 (338)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCT
T ss_pred             cCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhhhhcc
Confidence            36999999999999998832              568999999999986543  57777788885

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=94.39  E-value=0.034  Score=47.01  Aligned_cols=135  Identities=13%  Similarity=0.085  Sum_probs=81.1

Q ss_pred             CEEEec-CCcChHHHHHHHHhCC-CcEEecCc-h-HHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCc
Q 011590           30 THMFGV-VGIPVTSLANRAVQLG-VRFIAFHN-E-QSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWP  104 (482)
Q Consensus        30 ~~vFgv-pG~~~~~l~~al~~~~-i~~v~~~~-E-~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~P  104 (482)
                      +.++.. -|.....+...+.-.. -.++.+-. - ..+.-+|.|.+.+. +|+.+|++--| ++.-.+..+..|...++|
T Consensus        28 d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~la~p~~~vv~i~GDG-~f~~~~~el~ta~~~~lp  106 (183)
T d1q6za3          28 NAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDG-SANYSISALWTAAQYNIP  106 (183)
T ss_dssp             TCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEEEHH-HHTTTGGGHHHHHHHTCC
T ss_pred             CcEEEEcCCchHHHHHHHHhhccccccccccCCCcccchhHHHhhhhhccccceEEecccc-ccccccHHHHHHHHhCCC
Confidence            344433 4555555555443222 23343311 0 12445677777765 67888877655 345556678889999999


Q ss_pred             EEEEeCCCCccc---------CCC----CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590          105 IVMISGSCDQKD---------FGR----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL  170 (482)
Q Consensus       105 vl~i~g~~~~~~---------~~~----~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i  170 (482)
                      +++|.-.-....         .+.    ..+...|...+.+.+--..+++++++++.+.+++|+    .. .||+.|+|
T Consensus       107 v~~iV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~-~gp~lieV  180 (183)
T d1q6za3         107 TIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSLQEAL----SA-KGPVLIEV  180 (183)
T ss_dssp             CEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHH----TC-SSCEEEEE
T ss_pred             EEEEEEeccccchhhhhhhcccccCcccccCCCccHHHHHHHcCCEEEEECCHHHHHHHHHHHH----hC-CCcEEEEE
Confidence            988775443210         000    124556777888887667888988877766666665    43 49999987

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=93.92  E-value=0.072  Score=45.92  Aligned_cols=119  Identities=10%  Similarity=0.045  Sum_probs=77.5

Q ss_pred             CCcEEecCch---HHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------
Q 011590           51 GVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------  116 (482)
Q Consensus        51 ~i~~v~~~~E---~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------  116 (482)
                      .-+++....-   ..+.-+|.|...+. +|+.+|++--|. +.=.+.-|..|...++|+++|.-.-....          
T Consensus        42 ~~~~~~~~~~g~mG~glpaaiGa~~A~p~~~Vi~i~GDGs-f~m~~~El~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~  120 (208)
T d1ybha3          42 PRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGS-FIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFY  120 (208)
T ss_dssp             TTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHH-HHHTTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHS
T ss_pred             CceeccccccccchhhhhhHHHHHhcCCCCcEEEEccCCc-hhhhhhhHHHHHHhCCCEEEEEEeccccccceehhhhcc
Confidence            3455544332   22344566666665 567777775553 44445689999999999999996553220          


Q ss_pred             CCC-----------CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590          117 FGR-----------GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL  175 (482)
Q Consensus       117 ~~~-----------~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~  175 (482)
                      .++           ..+...|-..+.+.+.-+..++++++++.+.+++|++    . .||+.|++..|--
T Consensus       121 ~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIeV~id~~  185 (208)
T d1ybha3         121 KANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLD----T-PGPYLLDVICPHQ  185 (208)
T ss_dssp             TTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHHHH----S-SSCEEEEEECCTT
T ss_pred             cccccccccccccccCCCCCCHHHhhccCCceEEEcCCHHHHHHHHHHHHh----C-CCCEEEEEEECCC
Confidence            000           0112236677888888889999999888777777764    3 4899999987753

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.51  E-value=0.088  Score=49.42  Aligned_cols=52  Identities=10%  Similarity=0.020  Sum_probs=38.3

Q ss_pred             CCcccchHHHHHHHhhh----CCCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          431 WGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      .+.+|..+|-|+|+|++    ..++.|+++.|||+..=..  -.|-.+.-++|||+.|
T Consensus       138 ~~ivG~~~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv  195 (365)
T d1w85a_         138 QIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFV  195 (365)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccCccccchhhHHhhhhhcccCCceeeeccCCcccchhHHHHHHHhhhcccCceEE
Confidence            46788888888888777    4578999999999953211  1355556799999864

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.11  Score=48.62  Aligned_cols=52  Identities=13%  Similarity=0.094  Sum_probs=39.4

Q ss_pred             CCcccchHHHHHHHhhh----CCCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          431 WGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      .+.+|..+|-|+|+|+|    ..++-|+++.|||+..-..  -.|--+.-++|||+.|
T Consensus       135 ~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv  192 (361)
T d2ozla1         135 NGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFI  192 (361)
T ss_dssp             CCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhhhhhccCceEEE
Confidence            46778899999998888    4678999999999987321  1344455799998754

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Thermus thermophilus [TaxId: 274]

Probab=90.60  E-value=0.27  Score=41.26  Aligned_cols=116  Identities=13%  Similarity=0.042  Sum_probs=74.9

Q ss_pred             CcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH-hhHHHHHH--hh-------hCCCcEEEEeCCCCcccCCCC
Q 011590           52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV-HGLAGLSN--GM-------INTWPIVMISGSCDQKDFGRG  120 (482)
Q Consensus        52 i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~-N~~~ai~~--A~-------~~~~Pvl~i~g~~~~~~~~~~  120 (482)
                      -+++. .-.|++...+|.|.+...-||.+.+-.  +.++ .++.-|.+  ++       ....|+++.++.....  +.+
T Consensus        50 ~R~~~~pIaE~~~ig~a~G~A~~G~~Piv~~~~--~~f~~~~~dqi~n~~~~~~~~~~g~~~~~~~~~~~~G~~~--~g~  125 (186)
T d1umdb1          50 DRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQF--ADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV--RGG  125 (186)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHHTCEEEEECSS--GGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSS--SCG
T ss_pred             ceeeecccchhhhhhhHHHHHhccCceeEEEee--cchhhhhHHHHHHhHHHhccccCceeeeeeeeeccccccC--CCc
Confidence            35553 468999999999999986676655433  3222 24444443  21       2357888887654333  234


Q ss_pred             CCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590          121 DFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH  176 (482)
Q Consensus       121 ~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~  176 (482)
                      .++..+...+++.+....... .++.++..++..|+    .. ++|||+..|..+..
T Consensus       126 ~hhs~~~~~~~~~iPgl~V~~Ps~~~d~~~~l~~a~----~~-~~Pv~i~e~k~ly~  177 (186)
T d1umdb1         126 HHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAI----RD-EDPVVFLEPKRLYR  177 (186)
T ss_dssp             GGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHHH----HC-SSCEEEEEEGGGSS
T ss_pred             cccccCHHHHhhhccceeeeecCCHHHHHHHHHHHH----hC-CCcEEEEechHHhc
Confidence            456666688899887766654 45666666665555    44 49999999988754

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=90.45  E-value=0.11  Score=49.37  Aligned_cols=50  Identities=12%  Similarity=0.058  Sum_probs=37.4

Q ss_pred             CCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCChHHHHH----HHHcCcccccC
Q 011590          431 WGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEVEV----WLSCIIMISSI  482 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~~eL~T----~~r~~l~i~~~  482 (482)
                      .+.+|..+|-|+|+|++.    .++-|+++.|||+..  -.+++.    +.-+++||+.|
T Consensus       180 s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~--eG~f~EalN~A~~~~lPvifv  237 (407)
T d1qs0a_         180 SGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATA--ESDFHTALTFAHVYRAPVILN  237 (407)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGG--SHHHHHHHHHHHHHTCCEEEE
T ss_pred             ccccccccchhhhhHHHHhhccCcceecccccccccc--cchHHHHHHHHhccCcceEEE
Confidence            467888999999988873    568999999999953  334433    44689998754

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.04  E-value=0.17  Score=42.85  Aligned_cols=105  Identities=12%  Similarity=0.058  Sum_probs=63.1

Q ss_pred             HHHHHHHhH-----hCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-----CC-CC---CCCCcCHhhh
Q 011590           65 YAASAYGYL-----TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FG-RG---DFQELDQVEA  130 (482)
Q Consensus        65 ~~A~g~ar~-----tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-----~~-~~---~~q~~d~~~~  130 (482)
                      -+|.|.+.+     ..|+.+|++--| ++.-.+..|..|...++|+++|.-+-....     .+ +.   .+...|-..+
T Consensus        60 ~~aiG~alaa~~~~p~~~Vv~i~GDG-sf~m~~~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~~~~~~~~~~~~d~~~l  138 (196)
T d1pvda3          60 GATLGAAFAAEEIDPKKRVILFIGDG-SLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSL  138 (196)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEEHH-HHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHTTSCTTCGGGCCCCCCGGGH
T ss_pred             cchhHHHHHHHhcCCCCceeeccCcc-ccccccccccccccccccceEEEEeCCccceeEeeccCccccccCCCCCHHHH
Confidence            344555554     267788877655 455556789999999999999887654221     11 11   1223455555


Q ss_pred             hcccc---ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590          131 VKPFS---KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD  173 (482)
Q Consensus       131 ~~~~~---k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d  173 (482)
                      .+.+.   -++.++++++++.+.++++.   ....++|+.|+|-.|
T Consensus       139 a~a~G~~~~~~~~v~~~~el~~al~~~~---~~~~~~~~lIeV~i~  181 (196)
T d1pvda3         139 LPTFGAKDYETHRVATTGEWDKLTQDKS---FNDNSKIRMIEIMLP  181 (196)
T ss_dssp             HHHTTCSSEEEEEECBHHHHHHHHTCTT---TTSCSSEEEEEEECC
T ss_pred             HHHhCCCCceEEEecCHHHHHHHHHHHH---HhCCCCcEEEEEECC
Confidence            55553   23467777777766554431   223458999988544

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.27  E-value=0.19  Score=47.59  Aligned_cols=52  Identities=13%  Similarity=0.078  Sum_probs=38.3

Q ss_pred             CCcccchHHHHHHHhhh----CCCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          431 WGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      .+.+|..+|.|+|+|++    ..++-++++.|||+..-..  -.|--+.-++|||+.|
T Consensus       156 ~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv  213 (395)
T d2bfda1         156 SSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFF  213 (395)
T ss_dssp             CSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccccccccHHHHHHHHhhhcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEE
Confidence            46678899999998887    4568899999999985221  1344455799998754

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.17  E-value=0.71  Score=42.92  Aligned_cols=107  Identities=17%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhHhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC--cCHhhhhccccce
Q 011590           63 AGYAASAYGYLTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE--LDQVEAVKPFSKF  137 (482)
Q Consensus        63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N---~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~--~d~~~~~~~~~k~  137 (482)
                      |+.+|.+. |..|+..++++..|=|++|   +.-++--|-.-++|+|+++=+........-..|.  -+...-.+.+.-.
T Consensus       148 AvG~A~a~-k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~  226 (365)
T d1w85a_         148 AAGVALGL-KMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIP  226 (365)
T ss_dssp             HHHHHHHH-HHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCC
T ss_pred             hhhHHhhh-hhcccCCceeeeccCCcccchhHHHHHHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCc
Confidence            34444332 2457777888887877665   3457777888899999999755322111000011  1223333443333


Q ss_pred             eeec--CCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590          138 AVKA--KDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus       138 ~~~~--~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ..++  .++.++.+.+.+|+..+..++ ||+.|++-
T Consensus       227 ~~~vDG~D~~~v~~a~~~A~~~~R~g~-gP~lie~~  261 (365)
T d1w85a_         227 GIQVDGMDPLAVYAAVKAARERAINGE-GPTLIETL  261 (365)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEE
T ss_pred             eEEEecchhHHHHHHHHHHHHHhhcCC-ccEEEEee
Confidence            4444  467789999999999999976 99999974

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=2.6  Score=35.06  Aligned_cols=153  Identities=10%  Similarity=-0.028  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhcCCCEEEec----CCcC---hHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590           17 NTLAAKSLSLFGATHMFGV----VGIP---VTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC   88 (482)
Q Consensus        17 ~~~l~~~L~~~Gv~~vFgv----pG~~---~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~   88 (482)
                      .+++.+.|++..=-.+||-    +|+.   ...+.+..  ..-+++ ..-.|.+.+.+|.|.+...-||-+.+ ...-=.
T Consensus        11 ~~al~~~m~~d~~v~i~Gedv~~~gg~f~~t~gl~~~f--g~~Rv~dtPisE~~~~G~a~G~A~~G~rPive~-~~~df~   87 (192)
T d2ozlb1          11 NQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKY--GDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF-MTFNFS   87 (192)
T ss_dssp             HHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHH--CTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC-SSGGGG
T ss_pred             HHHHHHHHhhCCCEEEEecCCCccCCccccccchhhhc--ccceEEecccchhHHHHHHHHHHhcCCceEEEE-Eeccch
Confidence            3444555555543345543    4432   23344332  134555 34789999999999997766665554 333345


Q ss_pred             HhhHHHHHHhh---------hCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHh
Q 011590           89 VHGLAGLSNGM---------INTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERA  158 (482)
Q Consensus        89 ~N~~~ai~~A~---------~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a  158 (482)
                      ..++.-|.+-.         ..+.||++-+.....  .+.+.++..+..++|..+....... .++.++..++..|++  
T Consensus        88 ~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~--~g~g~~Hs~~~~~~~~~~PGl~Vv~Ps~p~da~gll~~Ai~--  163 (192)
T d2ozlb1          88 MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS--AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIR--  163 (192)
T ss_dssp             GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCC--SSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHHHHH--
T ss_pred             hhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCC--CCcccccccchHHhhccCCceEEEecCCHHHHHHHHHHHHh--
Confidence            66667776633         367899988865432  3344455555578888887666654 577888877777775  


Q ss_pred             hcCCCceEEEEcCcchhcccc
Q 011590          159 VSGRPGGCYLDLPTDVLHQTI  179 (482)
Q Consensus       159 ~~~~~gPv~l~iP~dv~~~~~  179 (482)
                         .++||.+.=|..+.....
T Consensus       164 ---~~~Pvi~~E~k~ly~~~~  181 (192)
T d2ozlb1         164 ---DNNPVVVLENELMYGVPF  181 (192)
T ss_dssp             ---SSSCEEEEECHHHHTCEE
T ss_pred             ---CCCCEEEEEcHHHhCCCc
Confidence               348999999998876653

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=88.69  E-value=0.21  Score=46.65  Aligned_cols=52  Identities=13%  Similarity=-0.006  Sum_probs=37.7

Q ss_pred             CCcccchHHHHHHHhhh----CCCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590          431 WGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI  482 (482)
Q Consensus       431 ~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~  482 (482)
                      .+.+|..+|-|+|+|++    ..+.-++++.|||+..-..  -.|--+.-+++||+.|
T Consensus       138 ~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv  195 (362)
T d1umda_         138 ASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFI  195 (362)
T ss_dssp             CSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEE
T ss_pred             cccccccchHHHHHHHhhhcccccceeeeeccCCcccCCchHHHHHHhhhccCCeeee
Confidence            45678888999998888    3578999999999985221  1244445689998754

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=88.11  E-value=0.75  Score=43.37  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             HhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEeCCCCcccCC-----CCCCCCcCHhhhhccccceeeecCCc
Q 011590           73 LTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFG-----RGDFQELDQVEAVKPFSKFAVKAKDI  144 (482)
Q Consensus        73 ~tgk~~v~~~t~GpG~~N---~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-----~~~~q~~d~~~~~~~~~k~~~~~~~~  144 (482)
                      ..|+..+++|..|=|++|   ..-++--|..-++|||+++=+.......     ......+-.....-.+-.+...=.++
T Consensus       199 ~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~  278 (407)
T d1qs0a_         199 IKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDF  278 (407)
T ss_dssp             HTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCH
T ss_pred             hccCcceecccccccccccchHHHHHHHHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccH
Confidence            346666777777777665   3457888889999999999654322110     00001122222222333344445677


Q ss_pred             CcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590          145 TEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       145 ~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      .++...+.+|+..+..++ ||++|++-.
T Consensus       279 ~avy~a~~~A~e~aR~g~-gP~lIE~~T  305 (407)
T d1qs0a_         279 VAVYAASRWAAERARRGL-GPSLIEWVT  305 (407)
T ss_dssp             HHHHHHHHHHHHHHHTTS-CCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCC-CceEEEEee
Confidence            789999999999999986 999999854

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.10  E-value=0.3  Score=45.62  Aligned_cols=105  Identities=16%  Similarity=0.162  Sum_probs=65.2

Q ss_pred             HHHHHHh---HhCCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCC--CCCCcCHhhhhccccce
Q 011590           66 AASAYGY---LTGKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRG--DFQELDQVEAVKPFSKF  137 (482)
Q Consensus        66 ~A~g~ar---~tgk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~~~~~~~~k~  137 (482)
                      .|.|+|+   ..++..|+++..|=|+++-   .-++--|-.-++|+|+++=+........-  .....++......+...
T Consensus       144 ~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~  223 (361)
T d2ozla1         144 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGL  223 (361)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEE
T ss_pred             hHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhhhhhccCceEEEEEeCCcccCCCchhccccccccccccccceE
Confidence            3445554   3466677777777777663   34677788899999999865532211000  00111222222223333


Q ss_pred             eeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590          138 AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP  171 (482)
Q Consensus       138 ~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP  171 (482)
                      ...=.++.++.+.+.+|+..+..++ ||+.|++-
T Consensus       224 ~vdGnD~~av~~a~~~A~~~~R~g~-gP~liE~~  256 (361)
T d2ozla1         224 RVDGMDILCVREATRFAAAYCRSGK-GPILMELQ  256 (361)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEEE
T ss_pred             EeccCCchHHHHHHHHHHHHHhccC-CCEEEEEe
Confidence            4444577789999999999999987 99999974

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.84  E-value=0.72  Score=38.65  Aligned_cols=119  Identities=13%  Similarity=-0.008  Sum_probs=72.4

Q ss_pred             CcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcC---ChhhHhhHHHHHHhh-----hCCCcEEEEeCCCCcccCCCCCC
Q 011590           52 VRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVS---GPGCVHGLAGLSNGM-----INTWPIVMISGSCDQKDFGRGDF  122 (482)
Q Consensus        52 i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~---GpG~~N~~~ai~~A~-----~~~~Pvl~i~g~~~~~~~~~~~~  122 (482)
                      -+++ ..-.|++...+|.|.+...-||-+.+-..   ..+.-...+-++.-.     ..+.|+++.+..-+..  +.+.+
T Consensus        55 ~Rv~dtpIsE~~~~G~a~GlA~~G~rPive~~~~df~~~a~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~~~--~gg~~  132 (191)
T d1ik6a1          55 ERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGT--RGGLY  132 (191)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC---------
T ss_pred             heeeccccchhHHHHHHHHHHHhcCceEEEEEecchhHHHHHHHHHHHHHHHHhcCCccccccceeecccCCC--CCccc
Confidence            4555 45789999999999999866766654321   233333444443322     2468999988654222  33556


Q ss_pred             CCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhcc
Q 011590          123 QELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ  177 (482)
Q Consensus       123 q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~  177 (482)
                      +..+..++|+.+....... .++.++..++..|++    . ++||++.-|..+...
T Consensus       133 Hs~~~~a~~~~iPgl~Vv~Ps~p~da~~ll~~al~----~-~~Pv~~~e~k~ly~~  183 (191)
T d1ik6a1         133 HSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIR----G-DDPVVFLEPKILYRA  183 (191)
T ss_dssp             ----HHHHHHTCTTCEEECCCSHHHHHHHHHHHHH----S-SSCEEEEEEGGGSSC
T ss_pred             ccCCHHHHHHHhhcccEEecCCHHHHHHHHHHHHh----C-CCcEEEEEcHHHhCC
Confidence            6666788999998877665 467777777776664    3 489999999887543

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=2.2  Score=35.80  Aligned_cols=161  Identities=9%  Similarity=0.000  Sum_probs=94.6

Q ss_pred             CCccCCcHHHHHHHH----HHhcCCCEEEec---CCc---ChHHHHHHHHhCCCcEEe-cCchHHHHHHHHHHHhHhCCc
Q 011590            9 SQNAQIDGNTLAAKS----LSLFGATHMFGV---VGI---PVTSLANRAVQLGVRFIA-FHNEQSAGYAASAYGYLTGKP   77 (482)
Q Consensus         9 ~~~~~~~~~~~l~~~----L~~~Gv~~vFgv---pG~---~~~~l~~al~~~~i~~v~-~~~E~~A~~~A~g~ar~tgk~   77 (482)
                      .++++++..|+|-+.    |++..=-.+||-   .|+   ....|.+.+  ..-|++. .-.|.+...+|.|.+...-||
T Consensus        15 ~~~~~~~~~~Ai~~al~~~m~~d~~v~~~GedV~~GGvf~~t~gL~~kf--G~~Rv~dtPIsE~~~~G~a~G~A~~G~rP   92 (203)
T d2bfdb1          15 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKY--GKDRVFNTPLCEQGIVGFGIGIAVTGATA   92 (203)
T ss_dssp             SCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHH--CTTTEEECCSCHHHHHHHHHHHHHTTCCE
T ss_pred             CceeeeeHHHHHHHHHHHHHhhCCCEEEEecCcCCCCccccchhhhhhh--hhhheeccccccceecchhhhhhhcccce
Confidence            345567755555555    444444455541   121   112233322  1346664 478999999999999887777


Q ss_pred             EEEEEcCChhhHhhHHHHHHh--h-------hCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcH
Q 011590           78 GILLTVSGPGCVHGLAGLSNG--M-------INTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEV  147 (482)
Q Consensus        78 ~v~~~t~GpG~~N~~~ai~~A--~-------~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~  147 (482)
                      -+.+-. .-=+..++.-|.+-  +       .-+.|++++........ +-+.++..+..++|..+...... +.++.++
T Consensus        93 ive~~f-~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~-~g~~~HSq~~~~~~~~~PGl~Vv~Ps~p~Da  170 (203)
T d2bfdb1          93 IAEIQF-ADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVG-HGALYHSQSPEAFFAHCPGIKVVIPRSPFQA  170 (203)
T ss_dssp             EEECSS-GGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCS-SCGGGSSCCCHHHHHTSTTCEEECCSSHHHH
T ss_pred             EEEEEe-hhhhhhhHHHHHHHHhhhhcccCCccccccceeeeccccCc-cccccccccHHHHHcCCCCcEEEecCCHHHH
Confidence            765543 22244555556542  1       12454444433221111 11235556678888888776665 5678888


Q ss_pred             HHHHHHHHHHhhcCCCceEEEEcCcchhccc
Q 011590          148 PKCVAQVLERAVSGRPGGCYLDLPTDVLHQT  178 (482)
Q Consensus       148 ~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~  178 (482)
                      ..++..|++     .++||++.-|..+....
T Consensus       171 ~gll~~ai~-----~~~Pvi~~E~k~Ly~~~  196 (203)
T d2bfdb1         171 KGLLLSCIE-----DKNPCIFFEPKILYRAA  196 (203)
T ss_dssp             HHHHHHHHH-----SSSCEEEEEEGGGTTSC
T ss_pred             HHHHHHHHh-----CCCcEEEEeeHHHhcCC
Confidence            888888875     35899999998886543

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=86.36  E-value=0.74  Score=42.76  Aligned_cols=98  Identities=16%  Similarity=0.188  Sum_probs=61.9

Q ss_pred             hCCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhcc--ccceeeecCCcCc
Q 011590           74 TGKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKP--FSKFAVKAKDITE  146 (482)
Q Consensus        74 tgk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~--~~k~~~~~~~~~~  146 (482)
                      .++..+++|..|-|++|-   .-++--|..-+.|+|+++=+-.......  .....-+.....+.  +..+...=.++.+
T Consensus       158 ~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~  237 (362)
T d1umda_         158 LRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLA  237 (362)
T ss_dssp             TTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHH
T ss_pred             ccccceeeeeccCCcccCCchHHHHHHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHH
Confidence            355667777778887763   3466678889999999996543221100  00001112223333  3334444457778


Q ss_pred             HHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590          147 VPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       147 ~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      +.+.+.+|+..+..+. ||+.|++-.
T Consensus       238 v~~a~~~Ai~~~R~g~-gP~lIE~~t  262 (362)
T d1umda_         238 SYYVVKEAVERARRGE-GPSLVELRV  262 (362)
T ss_dssp             HHHHHHHHHHHHHTTC-CCEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcC-CCEEEEccc
Confidence            9999999999999986 999999743

>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR PP module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI
species: Desulfovibrio africanus [TaxId: 873]

Probab=85.41  E-value=0.95  Score=42.81  Aligned_cols=33  Identities=12%  Similarity=-0.033  Sum_probs=27.9

Q ss_pred             CCcEEEEEcchhcc-CChHHHHHHHHcCcccccC
Q 011590          450 ERLVVAVEGDSGFG-FSAVEVEVWLSCIIMISSI  482 (482)
Q Consensus       450 ~~~vi~~~GDGsf~-~~~~eL~T~~r~~l~i~~~  482 (482)
                      ++.|+++.|||.+. -..+.|.-+++.|.+|++|
T Consensus       169 k~~V~~~gGDG~~~dIG~~~L~~A~~rg~nit~i  202 (447)
T d2c42a2         169 KKSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVF  202 (447)
T ss_dssp             CCEEEEEEEHHHHHTTTHHHHHHHHHTTCSCEEE
T ss_pred             CCcEEEEecCccHhhcChHHHHHHHHcCCCceEE
Confidence            47899999999866 5569999999999988764

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=85.17  E-value=2.5  Score=35.55  Aligned_cols=120  Identities=8%  Similarity=-0.022  Sum_probs=80.6

Q ss_pred             CcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHh---------hhCCCcEEEEeCCCCcccCCCCC
Q 011590           52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNG---------MINTWPIVMISGSCDQKDFGRGD  121 (482)
Q Consensus        52 i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A---------~~~~~Pvl~i~g~~~~~~~~~~~  121 (482)
                      -|++. .-.|++.+.+|.|.|...-||.+.+-. .==...++.-|.+-         ..-.+|+++.+.....  .+.+.
T Consensus        52 ~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve~~~-~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~--~~~g~  128 (204)
T d1qs0b1          52 SRVFDAPISESGIVGTAVGMGAYGLRPVVEIQF-ADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG--IYGGQ  128 (204)
T ss_dssp             TTEEECCSCHHHHHHHHHHHHHHTCEEEEECSC-GGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCS--SSCCS
T ss_pred             hheecccccceeehhHHHHHhcCCCcEEEEEEe-cchhhHHHHHHHHHHHHhhcccccCcccceEEEcCcccc--cCccc
Confidence            45553 478999999999999986666555432 22244555566542         2457788888765332  23355


Q ss_pred             CCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhcccc
Q 011590          122 FQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI  179 (482)
Q Consensus       122 ~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~  179 (482)
                      ++.....++|+.+-...... .++.++..++..|++     .++||++.-|..+.....
T Consensus       129 ~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~a~~-----~~~Pvi~~e~k~ly~~~~  182 (204)
T d1qs0b1         129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIE-----CDDPVIFLEPKRLYNGPF  182 (204)
T ss_dssp             SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHH-----SSSCEEEEEEGGGSSSCC
T ss_pred             ccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh-----CCCcEEEEeeHHHhCCCc
Confidence            66666678999987776654 466777777776664     348999999988776543

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.34  E-value=1.3  Score=41.45  Aligned_cols=108  Identities=16%  Similarity=0.113  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhHhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCC-Cc-CHhhhhccccce
Q 011590           63 AGYAASAYGYLTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-EL-DQVEAVKPFSKF  137 (482)
Q Consensus        63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N---~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~-d~~~~~~~~~k~  137 (482)
                      |+.+|.+.-+ .++-.+++|+.|=|+++   ..-++--|-.-++|+|+|+=+-.......-.-| .. +.....+.+.-.
T Consensus       166 A~G~A~a~k~-~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~  244 (395)
T d2bfda1         166 AVGAAYAAKR-ANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIM  244 (395)
T ss_dssp             HHHHHHHHHH-HTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCE
T ss_pred             HHHHHHHhhh-cCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccc
Confidence            4444444333 35556667777777665   335677788899999999865432211100011 11 222333444334


Q ss_pred             eeec--CCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590          138 AVKA--KDITEVPKCVAQVLERAVSGRPGGCYLDLPT  172 (482)
Q Consensus       138 ~~~~--~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~  172 (482)
                      ..++  .++.++.+.+.+|+..+..++ ||+.|++-.
T Consensus       245 ~~~vDG~Dv~aV~~a~~~A~~~~R~g~-gP~lIE~~T  280 (395)
T d2bfda1         245 SIRVDGNDVFAVYNATKEARRRAVAEN-QPFLIEAMT  280 (395)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHT-CCEEEEEEC
T ss_pred             eeEEecCcHHHHHHHHHHhhhhhhccC-CceEEEEee
Confidence            4444  567789999999999999876 999999753