Citrus Sinensis ID: 011610

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
Protein Sequence
MNFTLARFVFQFAVSLDTASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLKNRGF
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccccccccccccEEccccccccEEcccccccccccccEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccEEEEEccccccccccccccHHHHccccccccccccccHHccccHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHcccEEEccccEEEEEEcccEEEEEEEccEEEEcEEEEEEccEEEEcccccHHHHHHHHHcccccccccccEEEEEEcccccccccccccccEEEEEEEcccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccEEEEcEEccccEEEEEcccccccccccccccccccccEEEEcEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHEEEEEccccccccccEEEccccccEEEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEcccccccccccccHHHHcccccccccccHHHHHHHHccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEcccEEEEcEEEEEEcccccccccccccHHHHHHHccccEEccccccccccccHHHHHHHccccccHEEEEEEccccccccccEEEccHEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHccEEEEcccccccEEEEEcccccccccccHHHHHcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MNFTLARFVFQFAVSLdtastrsnCKYLLLTSKkrkfttaaiplthtsseELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEkgkplskvkisgggrcnvtnghcadkmilaghyprghkefrgsffslhgpmdtmswfsdhgvelkteddgrvfpvsdssssVIDCLLTEAKHRGVVLQTGKVvttassdnagRKFLLKVEKRTMNLVECIEADYLLiasgssqqgHRLAAQLghsivdpvpslftfKIADsqltelsgvsfPKVVAKLKLenvqrsspyltqvgpmlvthwglsgpVILRLSAWGARYLFSSCykgmltvdfvpdlhIEDMQSILSQHKIRFAkqkvlnscppefclvKRFWKYILgreglsgdtlwasVSNNSLISIARLLKHCTlevagkgqfkdefvtaggvplseislntmeskihprlffagevlnvdgvtggfnfqnawsggyiagtsigklsndatlknrgf
Flexible Loop (DISEMBL)
MNFTLARFVFQFavsldtastrsnCKYLLLTskkrkfttaaiplthtsseellVVVGGGAAGVYGAIraktvapklnvviiekgkplskvkisgggrcnvtnGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAkhrgvvlqtgkvvttassdnagrkFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAgtsigklsndatlknrgf
Low Complexity Region (SEG)
MNFTLARFVFQFAVSLDTASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLvvvgggaagvygaIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLKNRGF
Disordered region (IsUnstruct)
**FTLARFVFQFAVSLDTASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKT***GRVFPV****SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK************
Disordered Region (DISOPRED)
**FTLARFVFQFAVSLDTASTRSNCKYLLLTSKKRKFTTAAIP*THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHK***AKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG*************
Disordered Region (DISEMBL)
MNFTLARFVFQFAVSLDTASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLKNRGF
Disordered Region (DISPRO)
*NFTLARFVFQFAVSLDTASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFTLARFVFQFAVSLDTASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLKNRGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	481	2.2.26 [Sep-21-2011]
Q795R8	420	Uncharacterized protein Y	yes	no	0.823	0.942	0.300	5e-43
P44941	401	Uncharacterized protein H	yes	no	0.790	0.947	0.263	7e-29
P37631	400	Uncharacterized protein Y	N/A	no	0.715	0.86	0.28	1e-25

>sp|Q795R8|YTFP_BACSU Uncharacterized protein YtfP OS=Bacillus subtilis (strain 168) GN=ytfP PE=4 SV=2

 Score =  176 bits (445), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 215/436 (49%), Gaps = 40/436 (9%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMIL 111
           ++V+GGG +G+  AI A        V++I+KG  L  K+ ISGGGRCNVTN    +++I 
Sbjct: 6   VIVIGGGPSGLMAAIAAGEQGA--GVLLIDKGNKLGRKLAISGGGRCNVTNRLPVEEII- 62

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTE 171
             H P G+  F  S FS     D + +F + G++LK ED GR+FPV+D + SV+D LL  
Sbjct: 63  -KHIP-GNGRFLYSAFSEFNNEDIIKFFENLGIQLKEEDHGRMFPVTDKAQSVVDALLNR 120

Query: 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIA--------SGS 223
            K   V ++T + + +   ++     ++       N  E I +  ++IA        +GS
Sbjct: 121 LKQLRVTIRTNEKIKSVLYEDGQAAGIV------TNNGEMIHSQAVIIAVGGKSVPHTGS 174

Query: 224 SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSF--PKVVAKLKLENV------ 275
           +  G+  A   GH+I +  P+         ++   SG  F   K +  L L +V      
Sbjct: 175 TGDGYEWAEAAGHTITELFPT---------EVPVTSGEPFIKQKTLQGLSLRDVAVSVLN 225

Query: 276 QRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQS 335
           ++  P +T    ML TH+GLSGP ILR S +  + L     +  + +D  PD++ E +  
Sbjct: 226 KKGKPIITHKMDMLFTHFGLSGPAILRCSQFVVKEL-KKQPQVPIRIDLYPDINEETLFQ 284

Query: 336 ILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLK 395
            + +      K+ + N   P   + +R+  ++L + G+S +  ++ +  +      R  K
Sbjct: 285 KMYKELKEAPKKTIKNVLKP--WMQERYLLFLLEKNGISPNVSFSELPKDPFRQFVRDCK 342

Query: 396 HCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQN 455
             T+   G       FVT GGV + EI    M SK    L+F GE+L++ G TGG+N  +
Sbjct: 343 QFTVLANGTLSLDKAFVTGGGVSVKEIDPKKMASKKMEGLYFCGEILDIHGYTGGYNITS 402

Query: 456 AWSGGYIAGTSIGKLS 471
           A   G +AG + G+ +
Sbjct: 403 ALVTGRLAGLNAGQYA 418

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P44941|Y933_HAEIN Uncharacterized protein HI_0933 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0933 PE=1 SV=1

 Score =  129 bits (323), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 199/429 (46%), Gaps = 49/429 (11%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILA 112
           +++G GAAG++ A +   +    +V + + GK +  K+ +SGGG CN TN       +  
Sbjct: 8   IIIGAGAAGLFCAAQLAKLGK--SVTVFDNGKKIGRKILMSGGGFCNFTNLE-----VTP 60

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEA 172
            HY   +  F  S  + +   D +S  ++ G+    ++ G++F   + +  +++ L +E 
Sbjct: 61  AHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLF-CDEGAEQIVEMLKSEC 119

Query: 173 KHRG--VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEAD--YLLIASGSSQQGH 228
              G  ++L++         ++   +F+L+V          I A     +   G++  G+
Sbjct: 120 DKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGY 179

Query: 229 RLAAQLGHSIVDPVPSL--FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVG 286
           ++A Q G  ++ P  SL  FT++  D  LT LSG+S P  +  L          +  Q  
Sbjct: 180 QIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALC------GKSFYNQ-- 231

Query: 287 PMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAK 346
            +L TH G+SGP +L++S +             + +D +P+ ++E+        +I  AK
Sbjct: 232 -LLFTHRGISGPAVLQISNYWQP-------TESVEIDLLPNHNVEE--------EINQAK 275

Query: 347 QKVLNSCPPEF---CLVKRFWKYILG---REGLSGDTLWASVSNNSLISIARLLKHCTLE 400
           Q    S P +     LV+   K ++     +G+  D + A++S   + ++   + H    
Sbjct: 276 Q----SSPKQMLKTILVRLLPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHHWEFT 331

Query: 401 VAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGG 460
             G   ++   VT GGV    IS  TMES     L+F GEVL+V G  GG+NFQ AWS  
Sbjct: 332 PNGTEGYRTAEVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSA 391

Query: 461 YIAGTSIGK 469
           Y    SI +
Sbjct: 392 YACALSISR 400

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|P37631|YHIN_ECOLI Uncharacterized protein YhiN OS=Escherichia coli (strain K12) GN=yhiN PE=4 SV=3

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 188/400 (47%), Gaps = 56/400 (14%)

Query: 78  VVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTM 136
           V++I+ GK P  K+ +SGGGRCN TN +     +  G Y   +  F  S  +     D +
Sbjct: 29  VLLIDNGKKPGRKILMSGGGRCNFTNLY-----VEPGAYLSQNPHFCKSALARFTQWDFI 83

Query: 137 SWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK 196
              + HG+    +  G++F   DS+  ++D L+ E +   V  +    V + + D  G  
Sbjct: 84  DLVNKHGIAWHEKTLGQLF-CDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETG-- 140

Query: 197 FLLKVEKRTMNLVECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVPSLFTF 248
           F L +   T   V C   + L+IA+G        +S  G+++A Q G +++     L  F
Sbjct: 141 FTLDLNGMT---VGC---EKLVIATGGLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPF 194

Query: 249 KIADSQLTEL---SGVSFPKVVAKLKLEN--VQRSSPYLTQVGPMLVTHWGLSGPVILRL 303
            +    L EL   +GV+ P V+     EN  V R +        +L TH GLSGP +L++
Sbjct: 195 TLHKPLLEELQVLAGVAVPSVITA---ENGTVFREN--------LLFTHRGLSGPAVLQI 243

Query: 304 SAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFC--LVK 361
           S++     F S       ++ +PD+   D+++ L++ +     Q + N+        LV+
Sbjct: 244 SSYWQPGEFVS-------INLLPDV---DLETFLNEQRNAHPNQSLKNTLAVHLPKRLVE 293

Query: 362 RFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSE 421
           R     L + G   D     ++     ++   L    ++  G   ++   VT GGV  +E
Sbjct: 294 R-----LQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNE 348

Query: 422 ISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGY 461
           +S  TME++  P L+F GEV++V G  GG+NFQ AWS  +
Sbjct: 349 LSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAW 388

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
255552820	483	oxidoreductase, putative [Ricinus commun	0.977	0.973	0.759	0.0
225452674	517	PREDICTED: uncharacterized protein ytfP	0.972	0.905	0.752	0.0
224080009	442	predicted protein [Populus trichocarpa]	0.896	0.975	0.778	0.0
359807131	499	uncharacterized protein LOC100802042 [Gl	0.937	0.903	0.727	0.0
449461907	450	PREDICTED: uncharacterized protein YtfP-	0.877	0.937	0.766	0.0
297805716	481	oxidoreductase [Arabidopsis lyrata subsp	0.908	0.908	0.714	1e-166
30693520	480	FAD/NAD(P)-binding oxidoreductase family	0.856	0.858	0.714	1e-165
414869155	487	TPA: hypothetical protein ZEAMMB73_68578	0.862	0.852	0.677	1e-164
414869156	478	TPA: hypothetical protein ZEAMMB73_68578	0.862	0.868	0.677	1e-164
326511455	485	predicted protein [Hordeum vulgare subsp	0.862	0.855	0.682	1e-164

>gi|255552820|ref|XP_002517453.1| oxidoreductase, putative [Ricinus communis] gi|223543464|gb|EEF44995.1| oxidoreductase, putative [Ricinus communis]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/474 (75%), Positives = 408/474 (86%), Gaps = 4/474 (0%)

Query: 1   MNFTLARFVF-QFAVSLD--TASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLVVVG 57
           M+   AR+ F QF +S    T ST++N  +LLLT  K KF        H S+EELLVVVG
Sbjct: 1   MSLNFARYCFFQFGISTRAATVSTKTNSAHLLLTLNKPKFAATCTTTAHKSNEELLVVVG 60

Query: 58  GGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPR 117
           GGAAG+YGAIRAKT+AP L+V++IEKGKPLSKVKISGGGRCNVTNGHC+D MILA HYPR
Sbjct: 61  GGAAGIYGAIRAKTLAPNLDVLVIEKGKPLSKVKISGGGRCNVTNGHCSDHMILADHYPR 120

Query: 118 GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV 177
           GH+E +GSFF++HGP+DTMSWFSDHGV LK EDDGRVFPVS+SSSS+IDCLL EAK +GV
Sbjct: 121 GHRELKGSFFNMHGPVDTMSWFSDHGVALKIEDDGRVFPVSNSSSSIIDCLLKEAKRKGV 180

Query: 178 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237
            LQTGKVVT AS+D +G KF LKVEKRT   VE +EADYLLIASGSS+QG+ LA QLGHS
Sbjct: 181 SLQTGKVVTKASTDASG-KFHLKVEKRTAEFVESVEADYLLIASGSSRQGYSLATQLGHS 239

Query: 238 IVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSG 297
           IVDPVPSLFTFKI DSQL ELSGV+FPKV  KLK+EN+ R++P+L+QVGPMLVTHWGLSG
Sbjct: 240 IVDPVPSLFTFKIEDSQLAELSGVTFPKVEVKLKVENIPRNTPHLSQVGPMLVTHWGLSG 299

Query: 298 PVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEF 357
           PVILRLSAWGAR LF+SCYKGMLTVDF+PDLHIED++SILSQHK +FAKQK  NS P EF
Sbjct: 300 PVILRLSAWGARDLFTSCYKGMLTVDFIPDLHIEDIKSILSQHKNKFAKQKAFNSWPSEF 359

Query: 358 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGV 417
            + KRFWKYIL RE L GDTLWASVSNNS+IS+A +LKHC   V GKGQFKDEFVTAGGV
Sbjct: 360 GITKRFWKYILDRESLIGDTLWASVSNNSIISVAHVLKHCAFGVTGKGQFKDEFVTAGGV 419

Query: 418 PLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLS 471
           PLS+ISL+TMESKI PRLFFAGEVLN+DGVTGGFNFQ+AWSGGYIAGTSIG+L+
Sbjct: 420 PLSQISLSTMESKICPRLFFAGEVLNIDGVTGGFNFQSAWSGGYIAGTSIGELA 473

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452674|ref|XP_002276735.1| PREDICTED: uncharacterized protein ytfP [Vitis vinifera] gi|296087775|emb|CBI35031.3| unnamed protein product [Vitis vinifera]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/477 (75%), Positives = 403/477 (84%), Gaps = 9/477 (1%)

Query: 1   MNFTLARFVFQFAVSLDTASTRSNCKYLLLTSKKRKFTTAAIPLTHTSSEELLVVVGGGA 60
           M+FTL RF+          S   N  + +++ KK+ FTTAA   +  SSEE LVVVGGGA
Sbjct: 47  MSFTLVRFIH--------TSISRNHGFPIMSPKKKLFTTAATSTSPKSSEERLVVVGGGA 98

Query: 61  AGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHK 120
           AGVYGAIRAKTVAP L+VVIIEKGKPLSKVKISGGGRCNVTNGHC DKMILA HYPRG+K
Sbjct: 99  AGVYGAIRAKTVAPNLDVVIIEKGKPLSKVKISGGGRCNVTNGHCLDKMILAEHYPRGNK 158

Query: 121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQ 180
           EFRGSFFS+HGP+DTMSWFSDHGV LKTEDDGRVFPVS+SSSSVI+CL++E K R V+LQ
Sbjct: 159 EFRGSFFSMHGPVDTMSWFSDHGVNLKTEDDGRVFPVSNSSSSVIECLMSEMKKRRVLLQ 218

Query: 181 TGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVD 240
           TGKVVTT S+     KFLLK+EKRT+N VE +EADYL+IASGSS+QG+ LA QLGHSI+D
Sbjct: 219 TGKVVTTVSTTVG-GKFLLKIEKRTINSVEYLEADYLIIASGSSRQGYTLATQLGHSIID 277

Query: 241 PVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVI 300
           PVPSLFTFKI D  L ELSGV+F KV A LKLENVQ++ P L+QVGPMLVTHWG SGPVI
Sbjct: 278 PVPSLFTFKIEDPHLAELSGVTFHKVKANLKLENVQKNKPQLSQVGPMLVTHWGFSGPVI 337

Query: 301 LRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLV 360
           LRLSAWGAR LF+S Y+G+L VDF PDLHIED+++IL QHK  FAKQKVLNSCP +F LV
Sbjct: 338 LRLSAWGARDLFNSGYRGILLVDFTPDLHIEDVKTILIQHKDHFAKQKVLNSCPSKFGLV 397

Query: 361 KRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLS 420
           KRFWKYIL REGL G+ LWAS+SNNSL S+A LLKHC+  V GKG FKDEFVTAGGVPLS
Sbjct: 398 KRFWKYILDREGLDGNILWASISNNSLYSVASLLKHCSFGVTGKGIFKDEFVTAGGVPLS 457

Query: 421 EISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLK 477
           EISLNTMES+I   LFFAGEVLNVDGVTGGFNFQNAW+GGYIAGTSIGKL+ DATL+
Sbjct: 458 EISLNTMESRIQSHLFFAGEVLNVDGVTGGFNFQNAWTGGYIAGTSIGKLALDATLE 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080009|ref|XP_002305989.1| predicted protein [Populus trichocarpa] gi|222848953|gb|EEE86500.1| predicted protein [Populus trichocarpa]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/438 (77%), Positives = 383/438 (87%), Gaps = 7/438 (1%)

Query: 46  HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHC 105
            +S EELLVVVGGGAAGVYGAIRAKT+AP L+V+++EKG PLSKVKISGGGRCNVTNGHC
Sbjct: 2   QSSKEELLVVVGGGAAGVYGAIRAKTLAPNLDVLVVEKGNPLSKVKISGGGRCNVTNGHC 61

Query: 106 ADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVI 165
           +D  ILA  YPRGH+EF+GSFF +HGP DTMSWF+DHGV LK E+DGRVFP S+SSSSVI
Sbjct: 62  SDIKILAEQYPRGHREFKGSFFDMHGPADTMSWFTDHGVALKIEEDGRVFPTSNSSSSVI 121

Query: 166 DCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225
           DCLL+EAKHRGV LQ  KVV++AS + AG KFLLK+EKRT++ VE ++ADYLLIASGSSQ
Sbjct: 122 DCLLSEAKHRGVSLQNRKVVSSASVE-AGGKFLLKLEKRTVSFVENVKADYLLIASGSSQ 180

Query: 226 QGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQ- 284
           QGH LAAQLGHSIVDPVPSLFTFKIADS L ELSGV+FPKV  KLKLEN+ R++P+LTQ 
Sbjct: 181 QGHSLAAQLGHSIVDPVPSLFTFKIADSGLAELSGVTFPKVEVKLKLENILRNTPHLTQA 240

Query: 285 -----VGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQ 339
                VGPMLVTHWGLSGPVILRLSAWGAR LFSS YKG L VDFVPDLHIEDM+SIL++
Sbjct: 241 YIKFQVGPMLVTHWGLSGPVILRLSAWGARDLFSSGYKGTLIVDFVPDLHIEDMKSILNR 300

Query: 340 HKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL 399
           HK ++AKQK LNS P  F L KRFWKYI+ REGL GD LWAS+SNNS++SIA LLKHC  
Sbjct: 301 HKHKYAKQKALNSWPLGFSLTKRFWKYIVDREGLIGDALWASISNNSIVSIAHLLKHCAF 360

Query: 400 EVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSG 459
           E+ GKGQ+KDEFVTAGGVPLSEISLNTMESK   RLFFAGEVLNVDGVTGGFNFQNAWSG
Sbjct: 361 EITGKGQYKDEFVTAGGVPLSEISLNTMESKKCARLFFAGEVLNVDGVTGGFNFQNAWSG 420

Query: 460 GYIAGTSIGKLSNDATLK 477
           GYIAGTSIG+L+ +ATL+
Sbjct: 421 GYIAGTSIGELAAEATLE 438

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807131|ref|NP_001241606.1| uncharacterized protein LOC100802042 [Glycine max] gi|255646237|gb|ACU23603.1| unknown [Glycine max]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/452 (72%), Positives = 381/452 (84%), Gaps = 1/452 (0%)

Query: 28  LLLTSKKRKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL 87
           L  T + R+ TT AI     S EELLVVVGGGAAGVYGAI AKTVAP L+VV+IEKGKPL
Sbjct: 49  LFFTPRARRCTTLAISPATKSKEELLVVVGGGAAGVYGAIHAKTVAPHLSVVVIEKGKPL 108

Query: 88  SKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELK 147
           SKVK+SGGGRCNVTNGHC D MILA +YPRGHKE RGSFF+ HGP+DTMSWF   GVELK
Sbjct: 109 SKVKVSGGGRCNVTNGHCVDNMILAENYPRGHKELRGSFFNTHGPVDTMSWFVSQGVELK 168

Query: 148 TEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN 207
            EDDGRVFPVS+SSSS+IDCL++E K RGV +QT K VT  S  ++G KFLL+V++ T  
Sbjct: 169 VEDDGRVFPVSNSSSSIIDCLMSEVKERGVSVQTRKTVTAVSILSSG-KFLLEVQQHTSV 227

Query: 208 LVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVV 267
             E +EADYLLIASGSS+QG+ LA+QLGHS+VDPVPSLFTFKI D +L ELSGV+FPKV 
Sbjct: 228 HAEHVEADYLLIASGSSRQGYTLASQLGHSVVDPVPSLFTFKIEDLRLRELSGVTFPKVK 287

Query: 268 AKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPD 327
            +LKL++VQR+ P LTQVGPMLVTHWGLSGPV+LRLSAWGAR+LFSS YKG L VDF+PD
Sbjct: 288 VRLKLDSVQRNIPQLTQVGPMLVTHWGLSGPVVLRLSAWGARFLFSSGYKGKLFVDFIPD 347

Query: 328 LHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSL 387
           LH+E ++S+LS HK+++AKQKVLNSCPPEF + KRFW Y+L R+GLSGD LWAS+SN+SL
Sbjct: 348 LHVESLKSVLSHHKLQYAKQKVLNSCPPEFGITKRFWSYVLERQGLSGDILWASISNSSL 407

Query: 388 ISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGV 447
           +SI  LLK C  EV GKGQFKDEFVTAGGVPLSEI LNTMESKI  RLFFAGE+LNVDGV
Sbjct: 408 MSIGSLLKDCVFEVTGKGQFKDEFVTAGGVPLSEIMLNTMESKICSRLFFAGEILNVDGV 467

Query: 448 TGGFNFQNAWSGGYIAGTSIGKLSNDATLKNR 479
           TGGFNFQNAWSGG+IAGT+IG L+  + L ++
Sbjct: 468 TGGFNFQNAWSGGFIAGTTIGGLALGSYLGSK 499

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461907|ref|XP_004148683.1| PREDICTED: uncharacterized protein YtfP-like [Cucumis sativus] gi|449505843|ref|XP_004162583.1| PREDICTED: uncharacterized protein YtfP-like [Cucumis sativus]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/424 (76%), Positives = 367/424 (86%), Gaps = 2/424 (0%)

Query: 49  SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK 108
           +EELLVVVGGGAAGVYGAIRAKT+AP LNVV+IEKG+PLSKVKISGGGRCNVTNGH  D 
Sbjct: 17  NEELLVVVGGGAAGVYGAIRAKTLAPNLNVVVIEKGRPLSKVKISGGGRCNVTNGHYTDA 76

Query: 109 MILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCL 168
             LA HYPRGHKEFRG FF++HGPMDTMSWFS+HGVELK EDDGRVFPVS+ SSSV+DCL
Sbjct: 77  KSLAEHYPRGHKEFRGPFFNVHGPMDTMSWFSNHGVELKVEDDGRVFPVSNCSSSVVDCL 136

Query: 169 LTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGH 228
           ++EAK  GV LQTGKVV +AS    G KF LK++K  +N  E +EA+YLLIASGSS+QG 
Sbjct: 137 MSEAKRTGVSLQTGKVVASASISTGG-KFALKIQK-LINCFEHVEANYLLIASGSSRQGF 194

Query: 229 RLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPM 288
            LAAQLGHS++DPVPSLFTFKI D QL ELSGVSFPKV AKLKLEN+QR  P  TQVGPM
Sbjct: 195 SLAAQLGHSLIDPVPSLFTFKIEDPQLAELSGVSFPKVRAKLKLENIQRHLPQYTQVGPM 254

Query: 289 LVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQK 348
           LVTHWGLSGPVILRLSAWGAR LF+S YKG+L VDF PDLH+E++++IL++HK +F KQK
Sbjct: 255 LVTHWGLSGPVILRLSAWGARDLFASDYKGLLIVDFTPDLHLEEVKTILTRHKSQFMKQK 314

Query: 349 VLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFK 408
           V +SCP EF LVKRFWKY+L RE ++ + LWAS+SN SL SI+ LLK C  ++ GKGQFK
Sbjct: 315 VHSSCPSEFGLVKRFWKYLLDREEINDEILWASISNKSLASISSLLKQCIFKILGKGQFK 374

Query: 409 DEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG 468
           DEFVTAGGVPLSEISL TMESKIH RLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG
Sbjct: 375 DEFVTAGGVPLSEISLKTMESKIHSRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG 434

Query: 469 KLSN 472
           +L+N
Sbjct: 435 RLAN 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805716|ref|XP_002870742.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297316578|gb|EFH47001.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 316/442 (71%), Positives = 360/442 (81%), Gaps = 5/442 (1%)

Query: 32  SKKRKFTTAAIPLTHTSSE----ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL 87
           +++R FT+ AI       E    ELLVVVGGGAAGVYGAI AKT+AP L V++IEKG+ L
Sbjct: 22  TRRRNFTSTAITRLADKGENDESELLVVVGGGAAGVYGAITAKTLAPDLRVLVIEKGRFL 81

Query: 88  SKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELK 147
           SKVKISGGGRCNVTNGHC D + LAGHYPRGHKE +GSFF  HGP DTMSWFSDHGV LK
Sbjct: 82  SKVKISGGGRCNVTNGHCNDTINLAGHYPRGHKELKGSFFYTHGPADTMSWFSDHGVPLK 141

Query: 148 TEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN 207
            EDDGRVFPVSD SSSVIDCLL EA  RGV L+ GK V  AS+   G KFL+KV K++ +
Sbjct: 142 IEDDGRVFPVSDCSSSVIDCLLNEANIRGVRLERGKSVLAASTKPDG-KFLVKVGKQSAD 200

Query: 208 LVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVV 267
             E +EA YLLIA+GSSQQGH LA + GHSIVDPVPSLFTFKI D  LT L+G+SF KV 
Sbjct: 201 TSESVEATYLLIATGSSQQGHSLATKFGHSIVDPVPSLFTFKINDPLLTALAGISFSKVQ 260

Query: 268 AKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPD 327
           AKLKL+N  +    L Q+GPMLVTHWGLSGPVILRLSAWGAR+LFSS YKG L VDF+PD
Sbjct: 261 AKLKLDNPSQDFSNLVQIGPMLVTHWGLSGPVILRLSAWGARHLFSSKYKGHLIVDFIPD 320

Query: 328 LHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSL 387
           ++IE  +S+L +HK++F+K KV NS PP+F LV RFW+YIL REG S DTLWAS+SNNSL
Sbjct: 321 INIETAKSVLKEHKLQFSKHKVSNSFPPQFGLVNRFWRYILDREGSSKDTLWASLSNNSL 380

Query: 388 ISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGV 447
            SI+ LLKHCT +V GKGQ+KDEFVTAGGVPLSE+SL TMESK+ P LFFAGEVLNVDGV
Sbjct: 381 SSISDLLKHCTFQVTGKGQYKDEFVTAGGVPLSEVSLKTMESKLVPNLFFAGEVLNVDGV 440

Query: 448 TGGFNFQNAWSGGYIAGTSIGK 469
           TGGFNFQNAWSGGYIAGT+IG+
Sbjct: 441 TGGFNFQNAWSGGYIAGTNIGE 462

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693520|ref|NP_198810.2| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|27311775|gb|AAO00853.1| putative protein [Arabidopsis thaliana] gi|32441248|gb|AAP81799.1| At5g39940 [Arabidopsis thaliana] gi|332007110|gb|AED94493.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/413 (71%), Positives = 341/413 (82%), Gaps = 1/413 (0%)

Query: 67  IRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126
           IRAKT++P L V++IEKG  LSKVKISGGGRCNVTNGHC D + LAGHYPRGHKE +GSF
Sbjct: 61  IRAKTLSPDLRVLVIEKGSFLSKVKISGGGRCNVTNGHCNDTINLAGHYPRGHKELKGSF 120

Query: 127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVT 186
           F  HGP DTMSWFS+HGV LKTEDDGRVFPVSD+S SV+DCLL EA  RGV L+ GK V 
Sbjct: 121 FYTHGPADTMSWFSEHGVPLKTEDDGRVFPVSDNSLSVVDCLLNEANIRGVRLERGKSVL 180

Query: 187 TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLF 246
            AS    G KFL+KV K++ +  E IEA YLLIA+GSSQ+GH LA + GHSIVDPVPSLF
Sbjct: 181 AASIKPDG-KFLVKVGKQSADTSESIEATYLLIATGSSQKGHSLATKFGHSIVDPVPSLF 239

Query: 247 TFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAW 306
           TFKI D  LTEL+G+SF KV AKLKL+N       L Q+GPMLVTHWGLSGPVILRLSAW
Sbjct: 240 TFKINDPLLTELAGISFSKVQAKLKLDNPCPDLSNLVQIGPMLVTHWGLSGPVILRLSAW 299

Query: 307 GARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKY 366
           GARYLFSS YKG L VDF+PD++IE  +S+L +HK++F+K KV NS PP+F LV RFW+Y
Sbjct: 300 GARYLFSSKYKGHLIVDFIPDINIETAKSVLKEHKLQFSKHKVSNSYPPQFGLVNRFWRY 359

Query: 367 ILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNT 426
           IL REG S DTLWAS+SNNSL SI+ LLKHCT +V GKGQ+KDEFVTAGGVPLSE+SL T
Sbjct: 360 ILDREGSSKDTLWASLSNNSLSSISDLLKHCTFQVTGKGQYKDEFVTAGGVPLSEVSLKT 419

Query: 427 MESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLKNR 479
           MESK+ P LFFAGEVLNVDGVTGGFNFQNAWSGGYIAGT+IG+L++ + + ++
Sbjct: 420 MESKLVPNLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTNIGELASSSRISSK 472

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414869155|tpg|DAA47712.1| TPA: hypothetical protein ZEAMMB73_685785 [Zea mays]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/416 (67%), Positives = 340/416 (81%), Gaps = 1/416 (0%)

Query: 64  YGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123
           Y +IRAKT+AP LNV ++EKG+ LSKVKISGGGRCNVTNGH  + M LA +YPRG+KE R
Sbjct: 67  YASIRAKTLAPHLNVAVVEKGRFLSKVKISGGGRCNVTNGHHLEPMGLARNYPRGNKELR 126

Query: 124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGK 183
           GSFF+ HGP DTM WF+DHGV+LKTEDDGRVFPV+D+S+SV+DCLL EA+  GV LQ GK
Sbjct: 127 GSFFTAHGPQDTMRWFTDHGVKLKTEDDGRVFPVTDNSASVVDCLLNEARRLGVSLQAGK 186

Query: 184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVP 243
            V++AS    G KF+LKVEKRT +LV+ I A+Y+L+A+GSSQ G+ +AAQLGHSI+ PVP
Sbjct: 187 TVSSASVAQDG-KFVLKVEKRTADLVDYINANYILVATGSSQHGYSIAAQLGHSIIAPVP 245

Query: 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRL 303
           SLFTFKIAD +L +L+GV+FP V AKLKL+ VQ+S P LTQ GPMLVTHWGLSGPV+LRL
Sbjct: 246 SLFTFKIADKRLADLAGVTFPIVKAKLKLDGVQKSVPELTQTGPMLVTHWGLSGPVVLRL 305

Query: 304 SAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRF 363
           SAWGAR L    Y+G L VDFVPD+HIED++ +L  +K + AK KV N+ P EF LVKRF
Sbjct: 306 SAWGARELHQCNYQGNLMVDFVPDIHIEDVKRVLFHYKDQHAKHKVSNTFPTEFGLVKRF 365

Query: 364 WKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEIS 423
           W+++L +E L+GDT WAS+ NN L ++A  LK  T EV GKGQFKDEFVTAGGVP++EIS
Sbjct: 366 WRFLLEQESLNGDTHWASMPNNHLNAVAFRLKQWTFEVVGKGQFKDEFVTAGGVPITEIS 425

Query: 424 LNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLKNR 479
           L TMESK  P LFFAGEVLNVDGVTGGFNFQNAW+GGYIAGTSIG L++ + L  +
Sbjct: 426 LGTMESKKQPNLFFAGEVLNVDGVTGGFNFQNAWTGGYIAGTSIGTLASTSNLPEQ 481

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414869156|tpg|DAA47713.1| TPA: hypothetical protein ZEAMMB73_685785 [Zea mays]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/416 (67%), Positives = 340/416 (81%), Gaps = 1/416 (0%)

Query: 64  YGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123
           Y +IRAKT+AP LNV ++EKG+ LSKVKISGGGRCNVTNGH  + M LA +YPRG+KE R
Sbjct: 58  YASIRAKTLAPHLNVAVVEKGRFLSKVKISGGGRCNVTNGHHLEPMGLARNYPRGNKELR 117

Query: 124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGK 183
           GSFF+ HGP DTM WF+DHGV+LKTEDDGRVFPV+D+S+SV+DCLL EA+  GV LQ GK
Sbjct: 118 GSFFTAHGPQDTMRWFTDHGVKLKTEDDGRVFPVTDNSASVVDCLLNEARRLGVSLQAGK 177

Query: 184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVP 243
            V++AS    G KF+LKVEKRT +LV+ I A+Y+L+A+GSSQ G+ +AAQLGHSI+ PVP
Sbjct: 178 TVSSASVAQDG-KFVLKVEKRTADLVDYINANYILVATGSSQHGYSIAAQLGHSIIAPVP 236

Query: 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRL 303
           SLFTFKIAD +L +L+GV+FP V AKLKL+ VQ+S P LTQ GPMLVTHWGLSGPV+LRL
Sbjct: 237 SLFTFKIADKRLADLAGVTFPIVKAKLKLDGVQKSVPELTQTGPMLVTHWGLSGPVVLRL 296

Query: 304 SAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRF 363
           SAWGAR L    Y+G L VDFVPD+HIED++ +L  +K + AK KV N+ P EF LVKRF
Sbjct: 297 SAWGARELHQCNYQGNLMVDFVPDIHIEDVKRVLFHYKDQHAKHKVSNTFPTEFGLVKRF 356

Query: 364 WKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEIS 423
           W+++L +E L+GDT WAS+ NN L ++A  LK  T EV GKGQFKDEFVTAGGVP++EIS
Sbjct: 357 WRFLLEQESLNGDTHWASMPNNHLNAVAFRLKQWTFEVVGKGQFKDEFVTAGGVPITEIS 416

Query: 424 LNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLKNR 479
           L TMESK  P LFFAGEVLNVDGVTGGFNFQNAW+GGYIAGTSIG L++ + L  +
Sbjct: 417 LGTMESKKQPNLFFAGEVLNVDGVTGGFNFQNAWTGGYIAGTSIGTLASTSNLPEQ 472

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326511455|dbj|BAJ87741.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518298|dbj|BAJ88178.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/416 (68%), Positives = 335/416 (80%), Gaps = 1/416 (0%)

Query: 64  YGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123
           Y +IRAKT+AP LNVV++EKGK LSKVKISGGGRCNVTNGH  +   LA +YPRGHKE R
Sbjct: 62  YASIRAKTLAPHLNVVVVEKGKFLSKVKISGGGRCNVTNGHHLEPSGLARNYPRGHKELR 121

Query: 124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGK 183
           GSFF  HGP DTM WFSDHGVELKTEDDGRVFPV+D+S+SV+DCLL EA+  GV LQ GK
Sbjct: 122 GSFFRSHGPQDTMHWFSDHGVELKTEDDGRVFPVTDNSASVVDCLLNEARRLGVSLQAGK 181

Query: 184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVP 243
            V+ AS D+ G KF+++VEKRT++ V+ I A+Y+L+A+GSSQQG+  AA  GHSI+ PVP
Sbjct: 182 SVSGASVDDNG-KFVVEVEKRTIDFVDYISANYVLVATGSSQQGYSFAAHYGHSIIPPVP 240

Query: 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRL 303
           SLFTFKIAD +L +LSGV+F +V AKL L+ +Q+S+P LTQ GPMLVTHWGLSGPV+LRL
Sbjct: 241 SLFTFKIADKRLADLSGVTFTRVKAKLMLDGIQKSAPELTQTGPMLVTHWGLSGPVVLRL 300

Query: 304 SAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRF 363
           SAWGAR L+   Y+  L VDF+PD+HIED++ IL QHK + AK KV NS P EF LVKRF
Sbjct: 301 SAWGARELYQDKYQAKLMVDFIPDIHIEDVKRILFQHKDKNAKSKVNNSFPKEFGLVKRF 360

Query: 364 WKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEIS 423
           W ++L +E L GD  WA+V  N L +IA  LK    EV GKGQFKDEFVTAGGVPLSEIS
Sbjct: 361 WGFLLEQESLDGDMHWATVPKNHLNAIALRLKQWMFEVVGKGQFKDEFVTAGGVPLSEIS 420

Query: 424 LNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLKNR 479
           L+TMESK  P LFFAGEVLNVDGVTGGFNFQNAW+GGYIAGTSIG L++ + LK  
Sbjct: 421 LSTMESKKQPNLFFAGEVLNVDGVTGGFNFQNAWTGGYIAGTSIGTLASTSILKEE 476

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
TAIR|locus:2177997	480	AT5G39940 "AT5G39940" [Arabido	0.927	0.929	0.674	4.8e-158
UNIPROTKB|Q81KN6	423	BAS4604 "Uncharacterized prote	0.794	0.903	0.333	3.1e-44
TIGR_CMR|BA_4960	423	BA_4960 "conserved hypothetica	0.794	0.903	0.333	3.1e-44
UNIPROTKB|Q71Y97	421	LMOf2365_1947 "Putative unchar	0.804	0.919	0.304	2.6e-38
UNIPROTKB|Q3AAT1	394	CHY_1934 "Putative uncharacter	0.652	0.796	0.302	1.5e-33
TIGR_CMR|CHY_1934	394	CHY_1934 "conserved hypothetic	0.652	0.796	0.302	1.5e-33
UNIPROTKB|Q9KVQ9	398	VC_0080 "Putative uncharacteri	0.338	0.409	0.342	1.2e-29
TIGR_CMR|VC_0080	398	VC_0080 "conserved hypothetica	0.338	0.409	0.342	1.2e-29
UNIPROTKB|Q3ZA06	435	DET0195 "Putative uncharacteri	0.380	0.420	0.336	1.3e-29
TIGR_CMR|DET_0195	435	DET_0195 "conserved hypothetic	0.380	0.420	0.336	1.3e-29

TAIR|locus:2177997 AT5G39940 "AT5G39940" [Arabidopsis thaliana (taxid:3702)]

 Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
 Identities = 304/451 (67%), Positives = 352/451 (78%)

Query:    33 KKRKFTTAAIPLTHTSSE----ELLXXXXXXXXXXXXXIRAKTVAPKLNVVIIEKGKPLS 88
             ++R FT  AI       E    ELL             IRAKT++P L V++IEKG  LS
Sbjct:    23 RRRIFTATAITSLADKGEKDESELLVVVGGGAAGVYGAIRAKTLSPDLRVLVIEKGSFLS 82

Query:    89 KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKT 148
             KVKISGGGRCNVTNGHC D + LAGHYPRGHKE +GSFF  HGP DTMSWFS+HGV LKT
Sbjct:    83 KVKISGGGRCNVTNGHCNDTINLAGHYPRGHKELKGSFFYTHGPADTMSWFSEHGVPLKT 142

Query:   149 EDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL 208
             EDDGRVFPVSD+S SV+DCLL EA  RGV L+ GK V  AS    G KFL+KV K++ + 
Sbjct:   143 EDDGRVFPVSDNSLSVVDCLLNEANIRGVRLERGKSVLAASIKPDG-KFLVKVGKQSADT 201

Query:   209 VECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVA 268
              E IEA YLLIA+GSSQ+GH LA + GHSIVDPVPSLFTFKI D  LTEL+G+SF KV A
Sbjct:   202 SESIEATYLLIATGSSQKGHSLATKFGHSIVDPVPSLFTFKINDPLLTELAGISFSKVQA 261

Query:   269 KLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDL 328
             KLKL+N       L Q+GPMLVTHWGLSGPVILRLSAWGARYLFSS YKG L VDF+PD+
Sbjct:   262 KLKLDNPCPDLSNLVQIGPMLVTHWGLSGPVILRLSAWGARYLFSSKYKGHLIVDFIPDI 321

Query:   329 HIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLI 388
             +IE  +S+L +HK++F+K KV NS PP+F LV RFW+YIL REG S DTLWAS+SNNSL 
Sbjct:   322 NIETAKSVLKEHKLQFSKHKVSNSYPPQFGLVNRFWRYILDREGSSKDTLWASLSNNSLS 381

Query:   389 SIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVT 448
             SI+ LLKHCT +V GKGQ+KDEFVTAGGVPLSE+SL TMESK+ P LFFAGEVLNVDGVT
Sbjct:   382 SISDLLKHCTFQVTGKGQYKDEFVTAGGVPLSEVSLKTMESKLVPNLFFAGEVLNVDGVT 441

Query:   449 GGFNFQNAWSGGYIAGTSIGKLSNDATLKNR 479
             GGFNFQNAWSGGYIAGT+IG+L++ + + ++
Sbjct:   442 GGFNFQNAWSGGYIAGTNIGELASSSRISSK 472

GO:0005575 "cellular_component" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q81KN6 BAS4604 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 134/402 (33%), Positives = 208/402 (51%)

Query:    77 NVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDT 135
             +V++++KG  L  K+ ISGGGRCNVTN    D+++   H P G+  F  S FS+    D 
Sbjct:    27 SVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK--HIP-GNGRFLYSAFSIFNNEDI 83

Query:   136 MSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR 195
             +++F + GV+LK ED GR+FPVS+ + SV+D LLT  K  GV ++T   V T   +N   
Sbjct:    84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQT 143

Query:   196 K-FLLKV-EKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADS 253
             K  +LK  E    N V        +  +GS+  G+  A + GH+I +  P+       + 
Sbjct:   144 KAVVLKTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAKKAGHTITELFPTEVPILSNEP 203

Query:   254 QLTE--LSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYL 311
              + +  L G++   V   L + N  +    ++    ML TH+GLSGP  LR S +  + L
Sbjct:   204 FIQDRSLQGLALRDV--NLSVLN-PKGKAIISHKMDMLFTHFGLSGPAALRCSQFVVKAL 260

Query:   312 FS-SCYKGMLTVDFVPDLHIEDM-QSILSQHKIRFAK--QKVLNSCPPEFCLVKRFWKYI 367
                      +++D +P+ + E + Q +L Q K    K  + VL    PE     R++ ++
Sbjct:   261 KKFKTNTVQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLKGYVPE-----RYFLFL 315

Query:   368 LGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM 427
             L R  + G      VS+  + ++ +  K  T+ V G    +  FVT GGV + EI+   M
Sbjct:   316 LERNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVTGGGVSVKEINPKEM 375

Query:   428 ESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK 469
              SK    L+F GEVL++ G TGG+N  +A   G IAGT+ G+
Sbjct:   376 SSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGE 417

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_4960 BA_4960 "conserved hypothetical protein TIGR00275" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 134/402 (33%), Positives = 208/402 (51%)

Query:    77 NVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDT 135
             +V++++KG  L  K+ ISGGGRCNVTN    D+++   H P G+  F  S FS+    D 
Sbjct:    27 SVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK--HIP-GNGRFLYSAFSIFNNEDI 83

Query:   136 MSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR 195
             +++F + GV+LK ED GR+FPVS+ + SV+D LLT  K  GV ++T   V T   +N   
Sbjct:    84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQT 143

Query:   196 K-FLLKV-EKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADS 253
             K  +LK  E    N V        +  +GS+  G+  A + GH+I +  P+       + 
Sbjct:   144 KAVVLKTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAKKAGHTITELFPTEVPILSNEP 203

Query:   254 QLTE--LSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYL 311
              + +  L G++   V   L + N  +    ++    ML TH+GLSGP  LR S +  + L
Sbjct:   204 FIQDRSLQGLALRDV--NLSVLN-PKGKAIISHKMDMLFTHFGLSGPAALRCSQFVVKAL 260

Query:   312 FS-SCYKGMLTVDFVPDLHIEDM-QSILSQHKIRFAK--QKVLNSCPPEFCLVKRFWKYI 367
                      +++D +P+ + E + Q +L Q K    K  + VL    PE     R++ ++
Sbjct:   261 KKFKTNTVQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLKGYVPE-----RYFLFL 315

Query:   368 LGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM 427
             L R  + G      VS+  + ++ +  K  T+ V G    +  FVT GGV + EI+   M
Sbjct:   316 LERNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVTGGGVSVKEINPKEM 375

Query:   428 ESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK 469
              SK    L+F GEVL++ G TGG+N  +A   G IAGT+ G+
Sbjct:   376 SSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGE 417

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q71Y97 LMOf2365_1947 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 122/401 (30%), Positives = 198/401 (49%)

Query:    78 VVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTM 136
             V++IEKG  L  K+ +SGGGRCNVTN   A+++I   H P G+  F  S F      D +
Sbjct:    28 VLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEIIK--HIP-GNGRFLYSAFHAFDNEDII 84

Query:   137 SWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK 196
              +F   GV LK ED GR+FPVS+S+ SV + ++   +  GV +     V     ++   K
Sbjct:    85 RFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVK 144

Query:   197 FLLKVEKRTMNLVECIEA--DYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQ 254
              +   + + ++    I A     +  +GS+  G+  A + GH+I +  P+      ++  
Sbjct:   145 GVTLKDGQEISASAVIVAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPF 204

Query:   255 LTE--LSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLF 312
             + +  L G S   V   L + N  +  P +T    M+ TH+G+SGP  LR S +  R L 
Sbjct:   205 IKQKVLQGTSLRDV--SLSVLNA-KGKPIITHQMDMIFTHFGVSGPAALRCSMFVLRELK 261

Query:   313 SSCYKGM-LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGRE 371
              +    + + +D  P++   ++   + +      K+ + NS      L ++   ++L + 
Sbjct:   262 KTGASTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALKNSLSS--LLQEKMLLFLLEKA 319

Query:   372 GLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKI 431
              L     +  VS   +    +LLK  T EV G   F+  FVT GGV + EI    M+SK+
Sbjct:   320 DLDETADYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKL 379

Query:   432 HPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN 472
                LFF GE+L+++G TGG+N   A   G+ AG    ++SN
Sbjct:   380 MEGLFFCGEILDINGYTGGYNITCALVTGHTAGAYAAEVSN 420

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AAT1 CHY_1934 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 102/337 (30%), Positives = 179/337 (53%)

Query:   134 DTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV-VLQTGKVVTTASSDN 192
             D M++F  +G++LK E+  +V+P SD +  V+  L    + +GV +L   KV     +D 
Sbjct:    77 DLMAFFIKNGLKLKVEEK-KVYPASDKAKDVVKLLEKLLRKKGVEILYKQKVKDILVND- 134

Query:   193 AGRKFLLKVEKRTMNLVECIEAD--YLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKI 250
              G+   ++ +       + I A        +GSS  G  L ++LGH+I+ P P+L   K+
Sbjct:   135 -GQVLGVRTKDGIYYAAKVIVATGGASFPQTGSSGDGFELLSKLGHNIISPRPALVPLKL 193

Query:   251 ADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARY 310
             A+ ++ ELSG++    V  + L           + GP+L TH+GLSGP +L LS     Y
Sbjct:   194 AE-KVAELSGIT----VMDVNLALFSSGKKLKARRGPLLFTHFGLSGPTVLNLSC----Y 244

Query:   311 LFSSCYKGMLTVDFVPDLHIEDM-QSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILG 369
             L  +  +  + +DF P+  ++++ + I+S        + + N+ P +  L ++  +++L 
Sbjct:   245 LPLNFSEAKIKIDFFPEYSVDELKEKIISN-----GNKTLKNALPGK--LPEKLREWLLN 297

Query:   370 REGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMES 429
               G +   +  S+S   +  +++ LK     + G    +  +VTAGGV + EI+ +TMES
Sbjct:   298 YYGQNPKAVVHSLSPKVVTKVSQALKGTFFNLTGTMPLEMAYVTAGGVDVKEINPSTMES 357

Query:   430 KIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTS 466
             ++   ++ AGEV++  G TGGFN Q A+S GY+AG S
Sbjct:   358 RLIKGVYLAGEVIDCHGETGGFNLQMAFSTGYLAGKS 394

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1934 CHY_1934 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 102/337 (30%), Positives = 179/337 (53%)

Query:   134 DTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV-VLQTGKVVTTASSDN 192
             D M++F  +G++LK E+  +V+P SD +  V+  L    + +GV +L   KV     +D 
Sbjct:    77 DLMAFFIKNGLKLKVEEK-KVYPASDKAKDVVKLLEKLLRKKGVEILYKQKVKDILVND- 134

Query:   193 AGRKFLLKVEKRTMNLVECIEAD--YLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKI 250
              G+   ++ +       + I A        +GSS  G  L ++LGH+I+ P P+L   K+
Sbjct:   135 -GQVLGVRTKDGIYYAAKVIVATGGASFPQTGSSGDGFELLSKLGHNIISPRPALVPLKL 193

Query:   251 ADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARY 310
             A+ ++ ELSG++    V  + L           + GP+L TH+GLSGP +L LS     Y
Sbjct:   194 AE-KVAELSGIT----VMDVNLALFSSGKKLKARRGPLLFTHFGLSGPTVLNLSC----Y 244

Query:   311 LFSSCYKGMLTVDFVPDLHIEDM-QSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILG 369
             L  +  +  + +DF P+  ++++ + I+S        + + N+ P +  L ++  +++L 
Sbjct:   245 LPLNFSEAKIKIDFFPEYSVDELKEKIISN-----GNKTLKNALPGK--LPEKLREWLLN 297

Query:   370 REGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMES 429
               G +   +  S+S   +  +++ LK     + G    +  +VTAGGV + EI+ +TMES
Sbjct:   298 YYGQNPKAVVHSLSPKVVTKVSQALKGTFFNLTGTMPLEMAYVTAGGVDVKEINPSTMES 357

Query:   430 KIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTS 466
             ++   ++ AGEV++  G TGGFN Q A+S GY+AG S
Sbjct:   358 RLIKGVYLAGEVIDCHGETGGFNLQMAFSTGYLAGKS 394

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KVQ9 VC_0080 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 213 (80.0 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 61/178 (34%), Positives = 90/178 (50%)

Query:   288 MLVTHWGLSGPVILRLSAWGARYLFSSCYKGM-LTVDFVPDLHIEDMQSILSQHKIRFAK 346
             +L TH GLSGP +L++S++           G  +T + VPD+   D+  +LS  K     
Sbjct:   232 LLFTHRGLSGPAVLQISSYWT--------PGQTITTNLVPDV---DLAELLSSEKEAHPN 280

Query:   347 QKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQ 406
             Q + N+      L KR  + ++ R+ L  D      S   L ++   L+  ++   G   
Sbjct:   281 QSLKNTLSK--VLPKRLVEVLIERQ-LFADKPLKQYSPKELDAVQTRLEQWSIVPNGTEG 337

Query:   407 FKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAG 464
             ++   VT GGV    +S  TME K    LFF GEV++V G  GG+NFQ AWS GY+AG
Sbjct:   338 YRTAEVTLGGVDTDCLSSKTMECKTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAG 395

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0080 VC_0080 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 213 (80.0 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 61/178 (34%), Positives = 90/178 (50%)

Query:   288 MLVTHWGLSGPVILRLSAWGARYLFSSCYKGM-LTVDFVPDLHIEDMQSILSQHKIRFAK 346
             +L TH GLSGP +L++S++           G  +T + VPD+   D+  +LS  K     
Sbjct:   232 LLFTHRGLSGPAVLQISSYWT--------PGQTITTNLVPDV---DLAELLSSEKEAHPN 280

Query:   347 QKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQ 406
             Q + N+      L KR  + ++ R+ L  D      S   L ++   L+  ++   G   
Sbjct:   281 QSLKNTLSK--VLPKRLVEVLIERQ-LFADKPLKQYSPKELDAVQTRLEQWSIVPNGTEG 337

Query:   407 FKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAG 464
             ++   VT GGV    +S  TME K    LFF GEV++V G  GG+NFQ AWS GY+AG
Sbjct:   338 YRTAEVTLGGVDTDCLSSKTMECKTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAG 395

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3ZA06 DET0195 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 204 (76.9 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
 Identities = 65/193 (33%), Positives = 94/193 (48%)

Query:    78 VVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTM 136
             V+++EK + P  K+ ISG GRCN++N     + I A   P G   F  S FS     + +
Sbjct:    29 VILLEKTEQPGKKMLISGQGRCNISNSRDIAEFITA-FGPNGR--FLYSAFSRFFRQELV 85

Query:   137 SWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK 196
                + +GVE KTE  GR+FPVSD +  V+  L   A   G  L +G+ V+       GR 
Sbjct:    86 DLLARYGVETKTERGGRLFPVSDKAHDVVAALTEYAS--GAALVSGQKVSQILVSE-GRV 142

Query:   197 FLLKVEKRTMNLVECIEAD--YLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQ 254
               +K EK T      + A        +GSS  G RLA  LGH+IV   P+L    + +  
Sbjct:   143 VGVKTEKETFRADAAVIATGGASYPGTGSSGDGFRLAEALGHTIVKLRPALVPLVVKEID 202

Query:   255 LTE-LSGVSFPKV 266
             L + + GV+   +
Sbjct:   203 LAKSMQGVALKNI 215

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0195 DET_0195 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 204 (76.9 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
 Identities = 65/193 (33%), Positives = 94/193 (48%)

Query:    78 VVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTM 136
             V+++EK + P  K+ ISG GRCN++N     + I A   P G   F  S FS     + +
Sbjct:    29 VILLEKTEQPGKKMLISGQGRCNISNSRDIAEFITA-FGPNGR--FLYSAFSRFFRQELV 85

Query:   137 SWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK 196
                + +GVE KTE  GR+FPVSD +  V+  L   A   G  L +G+ V+       GR 
Sbjct:    86 DLLARYGVETKTERGGRLFPVSDKAHDVVAALTEYAS--GAALVSGQKVSQILVSE-GRV 142

Query:   197 FLLKVEKRTMNLVECIEAD--YLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQ 254
               +K EK T      + A        +GSS  G RLA  LGH+IV   P+L    + +  
Sbjct:   143 VGVKTEKETFRADAAVIATGGASYPGTGSSGDGFRLAEALGHTIVKLRPALVPLVVKEID 202

Query:   255 LTE-LSGVSFPKV 266
             L + + GV+   +
Sbjct:   203 LAKSMQGVALKNI 215

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q795R8	YTFP_BACSU	No assigned EC number	0.3004	0.8232	0.9428	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	481
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	1e-144
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	1e-137
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	1e-104
TIGR03862	376	TIGR03862, flavo_PP4765, uncharacterized flavoprot	6e-10
PRK08275	554	PRK08275, PRK08275, putative oxidoreductase; Provi	2e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	3e-04
PRK06854	608	PRK06854, PRK06854, adenylylsulfate reductase subu	0.002
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	0.002
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.002
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.002

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score =  419 bits (1080), Expect = e-144
 Identities = 166/424 (39%), Positives = 231/424 (54%), Gaps = 32/424 (7%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMIL 111
           ++V+GGGAAG+  AI A        V++I+KG K   K+ ISGGGRCNVTN    +    
Sbjct: 3   VIVIGGGAAGLMAAISAA--KRGRRVLLIDKGKKLGRKILISGGGRCNVTN--SVEPDEF 58

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTE 171
              YP      + +  S   P D +++F + GV LK ED GR+FPVSD +S ++D LL E
Sbjct: 59  LSRYPGNPHFLKSAL-SRFTPWDFIAFFEELGVPLKEEDHGRLFPVSDKASDIVDALLNE 117

Query: 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIAS--------GS 223
            K  GV ++T   V +   D+ GR F +  +         +EAD L++A+        GS
Sbjct: 118 LKELGVKIRTRTRVLSVEKDDDGR-FRVDTDGGEE-----LEADSLVLATGGLSWPKTGS 171

Query: 224 SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQL--TELSGVSFPKVVAKLKLENVQRSSPY 281
           +  G+ LA Q GH+I+   P+L  F I +S L    LSG+S   VV  LK +        
Sbjct: 172 TGFGYPLAEQFGHTIIPLRPALVPFTIDESFLFLKRLSGISLKNVVLSLKGKGGI----- 226

Query: 282 LTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHK 341
            +  G +L TH GLSGP IL+LS++  R L        L++D +PDL  E++ + L + +
Sbjct: 227 -SFRGELLFTHRGLSGPAILQLSSYWRRALKK--GGVTLSIDLLPDLDAEELAARLEKPR 283

Query: 342 IRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEV 401
               K+ + N+      L KR   ++L + G+  D   A +S   L ++A LLK     V
Sbjct: 284 GAHPKKSLKNALA--GLLPKRLALFLLEQAGIDPDKKLAQLSKKDLAALADLLKAWPFTV 341

Query: 402 AGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGY 461
            G   ++  FVTAGGV   EIS  TMESK  P LFFAGEVL+VDG TGG+NFQ AW+ GY
Sbjct: 342 NGTEGYRKAFVTAGGVDTKEISSKTMESKKVPGLFFAGEVLDVDGWTGGYNFQWAWASGY 401

Query: 462 IAGT 465
            AG 
Sbjct: 402 AAGQ 405

Length = 405

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score =  400 bits (1029), Expect = e-137
 Identities = 164/420 (39%), Positives = 233/420 (55%), Gaps = 30/420 (7%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILA 112
           +++GGGAAG+  AI A      L+V+++EK  K   K+ ISGGGRCN+TN     + +  
Sbjct: 1   IIIGGGAAGLMAAITAA--REGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFV-- 56

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEA 172
            +YPR  K  R +  S     D + +F   G+ELK E+DGRVFP SDS++ V+D LL E 
Sbjct: 57  AYYPRNGKFLRSAL-SRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNEL 115

Query: 173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG--------SS 224
           K  GV + T   V +   D+ G  F ++            EAD ++IA+G        S+
Sbjct: 116 KELGVEILTNSKVKSIKKDDGG--FGVETSGGE------YEADKVIIATGGLSYPQLGST 167

Query: 225 QQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQ 284
             G+ +A  LGH+IV PVP+L    + +S L ELSG+S    V    +         L +
Sbjct: 168 GDGYEIAESLGHTIVPPVPALVPLTLDESFLKELSGISL-DGVVLSLVNGK----KVLEE 222

Query: 285 VGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRF 344
            G +L TH+GLSGP IL LSA+ AR L        L +D +PDL  E+++  L + +   
Sbjct: 223 FGDLLFTHFGLSGPAILDLSAFAARALLKH-KGVELEIDLLPDLSEEELEQRLKRLRKSN 281

Query: 345 AKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGK 404
            K+ V N       L KR  + +L + G+  D   A +S   +  + +LLK+    ++G 
Sbjct: 282 PKKTVKNILK--GLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTISGT 339

Query: 405 GQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAG 464
             FK+  VTAGGV L EI+  TMESK+ P L+FAGEVL++DG TGG+N Q AWS GY+AG
Sbjct: 340 RGFKEAEVTAGGVSLKEINPKTMESKLVPGLYFAGEVLDIDGDTGGYNLQWAWSSGYLAG 399

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score =  315 bits (809), Expect = e-104
 Identities = 142/430 (33%), Positives = 212/430 (49%), Gaps = 47/430 (10%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILA 112
           +++GGG AG+  AI A        V++I+KG K   K+ +SGGGRCN TN    D+    
Sbjct: 7   IIIGGGPAGLMAAISAA--KAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDE--FL 62

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEA 172
              P      + S  +   P D + W    G+ LK ED GR+FP SD +S ++D LL E 
Sbjct: 63  SRNPGNGHFLK-SALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKEL 121

Query: 173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG--------SS 224
           +  GV ++T   V++   D++G +             E ++ D L++A+G        S+
Sbjct: 122 EALGVTIRTRSRVSSVEKDDSGFRLDTSSG-------ETVKCDSLILATGGKSWPKLGST 174

Query: 225 QQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQ 284
             G+ +A Q GH+I    P+L  F + +S L  L+G+S   V   +            T 
Sbjct: 175 GFGYPIARQFGHTITPLRPALVPFTLDESFLERLAGLSLKSVPLSVTAGKGI------TF 228

Query: 285 VGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIED-MQSILSQH--- 340
            G +L TH GLSGP +L+LS++    L        L++D +PD+  E+ ++ +   +   
Sbjct: 229 QGDLLFTHRGLSGPAVLQLSSYWR--LLEKKGGATLSIDLLPDVDAEELLRELRRANPKK 286

Query: 341 --KIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCT 398
             K   AK            L KR  +++L R G+  D   A +S   L  +A  LK   
Sbjct: 287 SLKNALAKL-----------LPKRLVEFLLERAGIP-DEPLAQLSPKELAQLAAALKAWP 334

Query: 399 LEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWS 458
           +   G   +++  VTAGGV   EI   TMESK  P L+FAGEVL+V G TGG+NFQ AW+
Sbjct: 335 ITPNGTEPYREAEVTAGGVDTKEIDSKTMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWA 394

Query: 459 GGYIAGTSIG 468
            G+ AG    
Sbjct: 395 SGWAAGQGAA 404

Length = 408

>gnl|CDD|163574 TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family

 Score = 60.6 bits (147), Expect = 6e-10
 Identities = 77/355 (21%), Positives = 131/355 (36%), Gaps = 62/355 (17%)

Query: 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQT--------G 182
             +    W    G+E      GRVFPV   ++ ++   L     +GV   T        G
Sbjct: 55  DAVALQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG 114

Query: 183 KVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG--------SSQQGHRLAAQL 234
             +   + D                    IEAD +++A G        S     ++  Q 
Sbjct: 115 GTLRFETPDGQST----------------IEADAVVLALGGASWSQLGSDGAWQQVLDQR 158

Query: 235 GHSIVDPVPSLFTFKIADSQ--LTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTH 292
           G S+    P+   F +  S    +  +G    +V A    +  +         G +++T 
Sbjct: 159 GVSVAPFAPANCGFLVDWSAHFASRFAGEPLKRVNATAGTQQTR---------GEIVITA 209

Query: 293 WGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNS 352
            GL G +I  LSA   R    +     L +D +PDL +E +   L+  +    KQ + N 
Sbjct: 210 RGLEGGLIYALSA-ALREQIKAGGSANLFLDLLPDLSLEQVTKRLAAPR---GKQSLSNH 265

Query: 353 CPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSL---ISIARLLKHCTLEVAGKGQFKD 409
                       +  LG +G+    L       +     ++A+ +K   L + G     +
Sbjct: 266 -----------LRKALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDE 314

Query: 410 EFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAG 464
              TAGGV    +   ++  K  P +F AGE+L+ +  TGG+     ++ G  AG
Sbjct: 315 AISTAGGVRQDALD-ESLMLKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAG 368

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. Length = 376

>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 4/42 (9%)

Query: 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISG 94
          ++V+GGG AG   AI+AK   P L V+++EK    + VK SG
Sbjct: 12 ILVIGGGTAGPMAAIKAKERNPALRVLLLEK----ANVKRSG 49

Length = 554

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 39/182 (21%), Positives = 60/182 (32%), Gaps = 56/182 (30%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNG--------H 104
           ++V+G G AG   A RA        V +IEKG          GG C +  G         
Sbjct: 6   VIVIGAGPAGYVAARRAA--KLGKKVALIEKGPL--------GGTC-LNVGCIPSKALIA 54

Query: 105 CADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFS--DHGVELKTEDDGRVFPVSDSSS 162
            A+    A H            F +H     + +         ++ E D  V        
Sbjct: 55  AAEAFHEAKHAEE---------FGIHADGPKIDFKKVMAR---VRRERDRFV-------G 95

Query: 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 222
            V++ L  + K    +  T + V      N      ++V          IEA  ++IA+G
Sbjct: 96  GVVEGLEKKPKID-KIKGTARFV----DPN-----TVEVNGER------IEAKNIVIATG 139

Query: 223 SS 224
           S 
Sbjct: 140 SR 141

Length = 460

>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha; Validated

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83
          ++++GGG AG   A  AK  AP L V+I+EK
Sbjct: 14 ILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK 44

Length = 608

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 38/177 (21%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAG 113
           V+VG G AG   A R       L+V+++EKG         GGG     +    +++I   
Sbjct: 7   VIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGG----LSPRALEELIPDF 60

Query: 114 HYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVID------C 167
                 ++  G+     G                         V      ++D       
Sbjct: 61  D-EEIERKVTGARIYFPGEK-------------------VAIEVPVGEGYIVDRAKFDKW 100

Query: 168 LLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 224
           L   A+  G  L  G  VT    ++ G      V        E + A  ++ A G +
Sbjct: 101 LAERAEEAGAELYPGTRVTGVIREDDG-----VVVGVRAGDDE-VRAKVVIDADGVN 151

Length = 396

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 10/49 (20%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRC-NV 100
           +VV+G G AG   AIRA  +   L V ++EKG+ L       GG C NV
Sbjct: 7   VVVIGAGPAGYVAAIRAAQL--GLKVALVEKGERL-------GGTCLNV 46

Length = 454

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 35/172 (20%), Positives = 48/172 (27%), Gaps = 61/172 (35%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
           +V++GGG AG+  AIR       L V +IE+           GG C              
Sbjct: 2   VVIIGGGPAGLAAAIRLA--RLGLKVALIER----------EGGTC-------------- 35

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEA 172
             Y RG                          E                  V        
Sbjct: 36  --YNRGC---------------LPKKLLLEVAEGLEL-----AIGLALPEEVY------- 66

Query: 173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 224
           K  GV +  G  V     D   +  +LK  +        I  D L+IA+G+ 
Sbjct: 67  KEFGVEVLLGTEVVDI--DRGEKTVVLKDVETG----REITYDKLIIATGAR 112

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	481
COG2081	408	Predicted flavoproteins [General function predicti	100.0
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	100.0
TIGR00275	400	flavoprotein, HI0933 family. The model when search	100.0
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	100.0
PRK08274	466	tricarballylate dehydrogenase; Validated	99.95
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.94
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.94
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.93
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.93
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.93
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.93
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.93
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.93
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.93
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.93
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.93
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.92
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.92
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.92
PRK07121	492	hypothetical protein; Validated	99.92
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.92
PRK06175	433	L-aspartate oxidase; Provisional	99.92
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.92
PRK07804	541	L-aspartate oxidase; Provisional	99.91
PLN02815	594	L-aspartate oxidase	99.91
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.91
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.91
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.91
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.9
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.9
PRK07512	513	L-aspartate oxidase; Provisional	99.9
PRK07395	553	L-aspartate oxidase; Provisional	99.9
PRK08275	554	putative oxidoreductase; Provisional	99.9
PRK08071	510	L-aspartate oxidase; Provisional	99.9
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.9
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.89
PRK09077	536	L-aspartate oxidase; Provisional	99.89
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.89
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.88
PRK08401	466	L-aspartate oxidase; Provisional	99.88
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.88
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.87
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.87
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.86
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.86
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.86
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.86
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.86
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.86
PRK12839	572	hypothetical protein; Provisional	99.85
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.85
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.83
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.82
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.82
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	99.79
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.78
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	99.77
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	99.73
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.7
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	99.7
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	99.64
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.6
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.56
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	99.53
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	99.48
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.48
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.47
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.46
COG3573	552	Predicted oxidoreductase [General function predict	99.45
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.4
PLN02661	357	Putative thiazole synthesis	99.4
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.4
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.39
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.38
PRK06116	450	glutathione reductase; Validated	99.38
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.37
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.36
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.33
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.33
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.33
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.33
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.33
PRK09897	534	hypothetical protein; Provisional	99.32
PRK10157	428	putative oxidoreductase FixC; Provisional	99.31
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.31
COG0579	429	Predicted dehydrogenase [General function predicti	99.31
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.3
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.29
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.29
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.29
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.28
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.27
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.27
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.27
PRK05257	494	malate:quinone oxidoreductase; Validated	99.27
PRK10262	321	thioredoxin reductase; Provisional	99.27
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.25
PRK07190	487	hypothetical protein; Provisional	99.23
PRK10015	429	oxidoreductase; Provisional	99.23
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.2
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.19
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.18
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.18
PRK08244	493	hypothetical protein; Provisional	99.17
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.16
PRK06847	375	hypothetical protein; Provisional	99.16
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	99.16
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.15
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.15
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.14
PRK06834	488	hypothetical protein; Provisional	99.13
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.13
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.13
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.13
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.12
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.12
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.11
PTZ00058	561	glutathione reductase; Provisional	99.11
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.1
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.1
PRK06184	502	hypothetical protein; Provisional	99.1
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.1
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.1
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.09
PLN02463	447	lycopene beta cyclase	99.09
PRK08013	400	oxidoreductase; Provisional	99.09
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.08
PRK06126	545	hypothetical protein; Provisional	99.08
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.07
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.07
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.07
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.06
PRK06185	407	hypothetical protein; Provisional	99.06
PLN02697	529	lycopene epsilon cyclase	99.04
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.04
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.04
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.03
PRK09126	392	hypothetical protein; Provisional	99.03
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.01
PRK06370	463	mercuric reductase; Validated	99.01
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.0
PLN02612	567	phytoene desaturase	99.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.0
PLN02507	499	glutathione reductase	98.98
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.98
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.98
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.98
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.98
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.98
PRK08163	396	salicylate hydroxylase; Provisional	98.97
PRK14694	468	putative mercuric reductase; Provisional	98.97
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.97
PRK07045	388	putative monooxygenase; Reviewed	98.95
TIGR02053	463	MerA mercuric reductase. This model represents the	98.95
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.95
PLN02985	514	squalene monooxygenase	98.94
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.94
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.94
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.93
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.93
PLN02487	569	zeta-carotene desaturase	98.93
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.93
PRK11445	351	putative oxidoreductase; Provisional	98.92
PRK07588	391	hypothetical protein; Provisional	98.92
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.91
PRK06996	398	hypothetical protein; Provisional	98.91
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.91
PRK07538	413	hypothetical protein; Provisional	98.91
PRK07236	386	hypothetical protein; Provisional	98.89
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.89
PRK06753	373	hypothetical protein; Provisional	98.89
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.88
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.88
PLN02546	558	glutathione reductase	98.88
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.88
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.88
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.87
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.87
PRK13748	561	putative mercuric reductase; Provisional	98.87
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.86
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.86
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.85
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.85
PRK05868	372	hypothetical protein; Validated	98.85
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.84
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.83
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.83
PRK06475	400	salicylate hydroxylase; Provisional	98.83
PRK08294	634	phenol 2-monooxygenase; Provisional	98.82
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.82
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.82
PTZ00052	499	thioredoxin reductase; Provisional	98.81
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.79
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.79
PRK07233	434	hypothetical protein; Provisional	98.79
PRK14727	479	putative mercuric reductase; Provisional	98.77
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.76
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.76
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.75
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.75
KOG2853	509	consensus Possible oxidoreductase [General functio	98.74
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.71
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.67
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.67
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.67
PRK07846	451	mycothione reductase; Reviewed	98.66
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.65
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.64
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.63
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.63
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.63
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.61
PRK07208	479	hypothetical protein; Provisional	98.61
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.61
PLN02268	435	probable polyamine oxidase	98.61
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.61
PLN02576	496	protoporphyrinogen oxidase	98.55
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.55
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.54
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.53
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.52
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.51
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.51
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.5
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.47
PTZ00367	567	squalene epoxidase; Provisional	98.47
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.46
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.45
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.45
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.43
PLN02785	587	Protein HOTHEAD	98.43
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.42
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.4
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.39
PLN02529	738	lysine-specific histone demethylase 1	98.39
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.37
PLN02676	487	polyamine oxidase	98.37
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	98.37
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.35
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.35
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.33
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	98.33
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.3
PLN02568	539	polyamine oxidase	98.28
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	98.27
PRK02106	560	choline dehydrogenase; Validated	98.27
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.26
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.26
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.23
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.23
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.23
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.22
PRK12831	464	putative oxidoreductase; Provisional	98.21
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.21
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.19
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.18
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.15
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.12
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.11
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.11
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.1
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.09
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.08
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.07
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.05
PLN03000	881	amine oxidase	98.04
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.04
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.03
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.02
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.99
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.97
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.96
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.94
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.93
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.87
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.87
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.84
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.84
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.79
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.75
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.74
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.73
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.73
PRK06370	463	mercuric reductase; Validated	97.72
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.71
PRK06116	450	glutathione reductase; Validated	97.7
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.68
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.66
KOG2852	380	consensus Possible oxidoreductase [General functio	97.65
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.64
COG3349	485	Uncharacterized conserved protein [Function unknow	97.63
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.63
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.63
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.61
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.6
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.56
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.55
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.54
PRK14727	479	putative mercuric reductase; Provisional	97.54
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.54
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.53
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.52
PLN02507	499	glutathione reductase	97.52
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.52
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.5
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.49
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.48
PRK14694	468	putative mercuric reductase; Provisional	97.48
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.47
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.46
PLN02852	491	ferredoxin-NADP+ reductase	97.45
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.44
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.43
PRK13984	604	putative oxidoreductase; Provisional	97.42
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.4
PRK07846	451	mycothione reductase; Reviewed	97.38
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.3
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.29
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.28
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.27
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.25
PLN02546	558	glutathione reductase	97.24
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.22
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.19
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.19
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.13
PTZ00058	561	glutathione reductase; Provisional	97.11
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.06
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.02
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.96
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.92
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.86
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.85
PTZ00188	506	adrenodoxin reductase; Provisional	96.84
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	96.74
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.74
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.71
PRK10262	321	thioredoxin reductase; Provisional	96.69
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.65
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.65
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.64
PLN02976	1713	amine oxidase	96.5
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.4
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.39
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.28
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.27
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.26
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.19
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.1
PRK12831	464	putative oxidoreductase; Provisional	95.9
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.89
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.81
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.38
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.04
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.53
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	94.22
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	94.08
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.78
PLN02852	491	ferredoxin-NADP+ reductase	93.76
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.71
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.66
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.37
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.99
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.85
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	92.76
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.59
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	92.49
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	92.45
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.45
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	92.38
KOG2755	334	consensus Oxidoreductase [General function predict	92.07
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.02
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.81
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	91.78
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	91.39
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	91.14
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	90.98
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	90.06
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	90.01
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	89.98
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	89.87
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	89.86
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	89.47
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	89.41
COG4716	587	Myosin-crossreactive antigen [Function unknown]	89.33
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	89.28
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	89.27
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.24
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.01
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	88.87
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.85
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.61
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	88.5
TIGR02053	463	MerA mercuric reductase. This model represents the	88.49
PLN02353	473	probable UDP-glucose 6-dehydrogenase	88.33
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.3
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.18
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.85
PRK13984	604	putative oxidoreductase; Provisional	87.81
PRK06719	157	precorrin-2 dehydrogenase; Validated	87.66
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.53
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	87.38
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	87.38
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	87.33
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	87.3
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	87.18
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.06
PRK06567	1028	putative bifunctional glutamate synthase subunit b	87.03
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	86.91
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	86.85
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	86.74
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	86.56
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.39
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	86.37
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	86.26
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	86.2
PRK15116	268	sulfur acceptor protein CsdL; Provisional	86.18
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	86.12
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.89
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	85.89
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	85.8
PTZ00082	321	L-lactate dehydrogenase; Provisional	85.61
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	85.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	85.52
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	85.43
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.04
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	84.95
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	84.23
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	84.08
PTZ00052	499	thioredoxin reductase; Provisional	84.07
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	84.01
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	83.99
PRK13748	561	putative mercuric reductase; Provisional	83.62
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	83.58
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	83.58
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	83.52
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	83.32
PRK04148	134	hypothetical protein; Provisional	83.12
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	83.09
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	83.07
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	82.83
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	82.81
PRK06223	307	malate dehydrogenase; Reviewed	82.72
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	82.68
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	82.51
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	82.03
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	81.92
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	81.64
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	81.45
COG0099	121	RpsM Ribosomal protein S13 [Translation, ribosomal	81.39
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	81.28
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	81.11
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	81.09
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	81.05
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	81.01
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	80.72
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	80.55
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	80.49
PRK11730	715	fadB multifunctional fatty acid oxidation complex	80.42
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	80.34
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.31
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	80.31

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=100.00  E-value=3.9e-92  Score=687.54  Aligned_cols=397  Identities=35%  Similarity=0.560  Sum_probs=366.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      +.+||+||||||||||||+.+++  +|.+|+|||+ ..+|+|++++|+||||+||...  +.+|..+|+.+.+++ ++.+
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl-~sal   76 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFL-KSAL   76 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCcccccccc--HHHHHHhCCCcchHH-HHHH
Confidence            46899999999999999999999  8999999995 4899999999999999999865  558999998877665 6778


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                      .+|+++|+++|++.+|+++++++.|++||.++++++++++|+.++++.||+|+++++|.+++.++  ..+.+.+.+    
T Consensus        77 ~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~----  150 (408)
T COG2081          77 ARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSS----  150 (408)
T ss_pred             HhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCC----
Confidence            99999999999999999999999999999999999999999999999999999999999999875  789999886    


Q ss_pred             ceEEEEcCeEEEccC--------CChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCC
Q 011610          208 LVECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSS  279 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG--------~~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~  279 (481)
                       +.+|+||.+|+|||        +++++|.+|+++||+|++++|++|||.+.++.++.|+|++++++.+++..+.     
T Consensus       151 -g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~~~l~gls~~~v~~~v~~~~-----  224 (408)
T COG2081         151 -GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFLERLAGLSLKSVPLSVTAGK-----  224 (408)
T ss_pred             -CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCCHHHHHHhcCCcccceEEEEecCC-----
Confidence             55899999999998        3678999999999999999999999999998889999999998887775432     


Q ss_pred             CccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccch
Q 011610          280 PYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCL  359 (481)
Q Consensus       280 ~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l  359 (481)
                       -....||+||||+|||||+||++|+++. + .+.++...+.||++|+.+.+++.+.+   ...++++++.+.|..  .|
T Consensus       225 -g~~~~g~~LfTh~GiSGPavl~~Ss~~~-~-~~~~~~~~i~iDllP~~~~~~l~~~l---~~~~~~kslkn~L~~--~l  296 (408)
T COG2081         225 -GITFQGDLLFTHRGLSGPAVLQLSSYWR-L-LEKKGGATLSIDLLPDVDAEELLREL---RRANPKKSLKNALAK--LL  296 (408)
T ss_pred             -CceeecceEEEecCCcHHHHHHHHHHHH-H-hccCCCceEEEecCCCCCHHHHHHHH---HhhChhhHHHHHHHH--Hh
Confidence             1567799999999999999999999975 3 44455689999999999999987777   567888999999988  99


Q ss_pred             hHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEE
Q 011610          360 VKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAG  439 (481)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~G  439 (481)
                      |+|+++.++++.+| ++..+.++++++.+.|++.||+|+|++.|+++|++|+||+|||+++|||++|||||.+|||||||
T Consensus       297 p~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~GGV~~~eid~kTmesk~vPGLyf~G  375 (408)
T COG2081         297 PKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAGGVDTKEIDSKTMESKKVPGLYFAG  375 (408)
T ss_pred             hhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccceeEEecCceehhhcCHHHHHhhcCCCcEEEE
Confidence            99999999999999 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecccCcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          440 EVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       440 E~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      |||||+|+||||||||||+||++||+.++++.
T Consensus       376 EvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~  407 (408)
T COG2081         376 EVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL  407 (408)
T ss_pred             EEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999998764

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=100.00  E-value=6.9e-92  Score=716.45  Aligned_cols=397  Identities=39%  Similarity=0.613  Sum_probs=322.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      |||+|||||||||+||+.|++  .|.+|+|+|++ .+|+|+++||+||||++|.. .+...|...|..+. .+....+..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~-~~~~~~~~~~~~~~-~f~~~~l~~   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRVGKKILITGNGRCNLTNLN-IDPSEFLSGYGRNP-KFLKSALKR   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SSGGGEECS-TBTT-TCTHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCcccccceeecCCCCccccccc-cchhhHhhhcccch-HHHHHHHhc
Confidence            799999999999999999999  79999999965 88999999999999999943 34445666665544 455677899


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      |++.++++||+++|+++..++++++||.++++.+++++|++++++.||+|+++++|.+|+.++ ++.+.|++++     .
T Consensus        77 f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~-----~  150 (409)
T PF03486_consen   77 FSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKN-----G  150 (409)
T ss_dssp             S-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETT-----T
T ss_pred             CCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccC-----c
Confidence            999999999999999999988999999999999999999999999999999999999999876 4568999943     6


Q ss_pred             EEEEcCeEEEccC--------CChhHHHHHHHcCCCcccCCCceeEeeeCcccc--ccccCceeccEEEEEEecCccCCC
Q 011610          210 ECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQL--TELSGVSFPKVVAKLKLENVQRSS  279 (481)
Q Consensus       210 ~~i~ad~VIlAtG--------~~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~--~~l~G~~~~~~~~~~~~~~~~~~~  279 (481)
                      ..+.||.||+|||        ++|++|.+|+++||+++++.|++|++++.+++.  +.|+|++++++...+  ++    +
T Consensus       151 ~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~~~~~--~~----~  224 (409)
T PF03486_consen  151 GEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCDEPWLFFKELSGVRLKAVISLL--DG----K  224 (409)
T ss_dssp             EEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE--HHHHHTGGGTT-EEEEEEEEE---E----C
T ss_pred             ccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeecchhhhhhhhCCCceeeEEEEe--cc----C
Confidence            7999999999987        478899999999999999999999999999877  999999998655444  43    3


Q ss_pred             CccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccch
Q 011610          280 PYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCL  359 (481)
Q Consensus       280 ~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l  359 (481)
                      ...++.||++|||||+|||+||++|+++.+++.+ ++++.+.|||+|+++.++++++|.++...++++++.+++..  .|
T Consensus       225 ~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~~-~~~~~i~id~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~--~l  301 (409)
T PF03486_consen  225 KKASETGELLFTHYGISGPAILQLSRFIARALNK-KKKVEISIDFLPDLSEEELEELLQERKEKNPKRTLKNFLKG--LL  301 (409)
T ss_dssp             TCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH---TTEEEEEESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTT--TS
T ss_pred             CccceeeeEEEECCccchHHHHHHHHHHHHHHHh-cCCceEEEEeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH--Hh
Confidence            4678999999999999999999999999888764 45689999999999999999999999999999999999998  99


Q ss_pred             hHHHHHHHHHhcCC-CCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEE
Q 011610          360 VKRFWKYILGREGL-SGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFA  438 (481)
Q Consensus       360 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~  438 (481)
                      |+|++..+++.+++ ++++++++++++++++|++.||+|+|+|+|+.+|++||||+|||+++||||+|||||.+||||||
T Consensus       302 p~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~eid~~TmeSk~~~gLyf~  381 (409)
T PF03486_consen  302 PKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTGTGGFDKAQVTAGGVDLKEIDPKTMESKLVPGLYFA  381 (409)
T ss_dssp             -HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESEE--TTT-SEEEEEE-GGGB-TTT-BBSSSTTEEE-
T ss_pred             HHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecccCCCceEEEECCCcCHHHCCHhhhcccCCCCeEEE
Confidence            99999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecccCcchHHHHHHHHHHHHHHHH
Q 011610          439 GEVLNVDGVTGGFNFQNAWSGGYIAGTS  466 (481)
Q Consensus       439 GE~ldv~g~~GGynl~~A~~sG~~AG~~  466 (481)
                      ||+|||||+||||||||||+|||+||+.
T Consensus       382 GEvLDvdG~~GGYNLq~AwsSG~~Ag~~  409 (409)
T PF03486_consen  382 GEVLDVDGPCGGYNLQWAWSSGYLAGKY  409 (409)
T ss_dssp             GGGBSEEE-TTTHHHHHHHHHHHHHHH-
T ss_pred             EEEEEeccCcCchhHhHHHHHHHHhhCC
Confidence            9999999999999999999999999974

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00275 flavoprotein, HI0933 family

Probab=100.00  E-value=3.4e-79  Score=628.51  Aligned_cols=391  Identities=42%  Similarity=0.646  Sum_probs=350.2

Q ss_pred             EEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcCCh
Q 011610           54 VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGP  132 (481)
Q Consensus        54 vIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  132 (481)
                      +|||||++|++||+.|++  .|.+|+|+|++ .+|+++.++|+|+||++|....  ..+...|..+. .+....+..|+.
T Consensus         1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~--~~~~~~~~~~~-~~~~~~l~~~~~   75 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPT--PEFVAYYPRNG-KFLRSALSRFSN   75 (400)
T ss_pred             CEEEEeHHHHHHHHHHHh--cCCcEEEEecCccccccccccCCceEEccCCCcc--hhHHHhcCCCc-HHHHHHHHhCCH
Confidence            699999999999999999  78999999965 6889999999999999986432  24545555443 444566788899


Q ss_pred             HHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEE
Q 011610          133 MDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECI  212 (481)
Q Consensus       133 ~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i  212 (481)
                      .++.+|+.+.|+++..++.+++||.++.+.++++.|.+.+++.|++++++++|+++..++  +.+.|+++      +..+
T Consensus        76 ~d~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~------~~~i  147 (400)
T TIGR00275        76 KDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETS------GGEY  147 (400)
T ss_pred             HHHHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEEC------CcEE
Confidence            999999999999998888899999988999999999999999999999999999997754  56777764      4579


Q ss_pred             EcCeEEEccCC--------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCCCccce
Q 011610          213 EADYLLIASGS--------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQ  284 (481)
Q Consensus       213 ~ad~VIlAtG~--------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~  284 (481)
                      .||.||+|+|+        +|+++.+++++||+++++.|+++++.++++..+.++|++++++ +.++.++    ++..++
T Consensus       148 ~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~~~~~~~l~Gv~~~~~-~~~~~~~----~~~~~~  222 (400)
T TIGR00275       148 EADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDESFLKELSGISLDGV-VLSLVNG----KKVLEE  222 (400)
T ss_pred             EcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeCCcccccCCCCcCccE-EEEecCC----cEEEee
Confidence            99999999994        6789999999999999999999999999988899999999765 3344444    345678


Q ss_pred             ecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHH
Q 011610          285 VGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFW  364 (481)
Q Consensus       285 ~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  364 (481)
                      .||++|||||+|||+||++|+++.+.+. .++.+.+.|||+|+++.+++.++|.++...++++++.+++..  +||+|++
T Consensus       223 ~g~llft~~gisG~~vl~~s~~~~~~~~-~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~  299 (400)
T TIGR00275       223 FGDLLFTHFGLSGPAILDLSAFAARALL-KHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKG--LLPKRLA  299 (400)
T ss_pred             cccEEEECCCcCHHHHHHHHHHHHHHhh-cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChhhhHHHHhhh--hhhHHHH
Confidence            8999999999999999999999877663 345678999999999999999999998899999999999988  9999999


Q ss_pred             HHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEeec
Q 011610          365 KYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNV  444 (481)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv  444 (481)
                      +.+++.++|+++++++++++++++.|++.||+|+|+|+|+.+|++||||+|||+++||||.|||||++||||||||+|||
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt~GGv~~~ei~~~~m~~k~~~gly~~GE~lDv  379 (400)
T TIGR00275       300 ELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVTAGGVSLKEINPKTMESKLVPGLYFAGEVLDV  379 (400)
T ss_pred             HHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEecCcccchhcChhhhhhcCCCCeEEEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcchHHHHHHHHHHHHHHH
Q 011610          445 DGVTGGFNFQNAWSGGYIAGT  465 (481)
Q Consensus       445 ~g~~GGynl~~A~~sG~~AG~  465 (481)
                      ||+||||||||||+|||+||+
T Consensus       380 ~g~~GGyNlq~a~~sg~~ag~  400 (400)
T TIGR00275       380 DGDTGGYNLQWAWSSGYLAGK  400 (400)
T ss_pred             CCCCCchHHHHHHHHHHHhcC
Confidence            999999999999999999984

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=100.00  E-value=3e-76  Score=591.71  Aligned_cols=364  Identities=22%  Similarity=0.298  Sum_probs=301.2

Q ss_pred             CCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCe
Q 011610           75 KLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGR  153 (481)
Q Consensus        75 g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~  153 (481)
                      |.+|+|+|++ ++|+|+++|||||||+||....  ..+..+|..+. .|...++..|+++|+++||+++|+++..+++|+
T Consensus         1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~--~~~~~~~~~~~-~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~gr   77 (376)
T TIGR03862         1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPL--PRFIERYGDAA-EWLAPWLEAFDAVALQDWARGLGIETFVGSSGR   77 (376)
T ss_pred             CCeEEEEeCCCCccceeEEcCCCCcccCCCCch--HHHHHhcCCch-HHHHHHHHhCCHHHHHHHHHHCCCceEECCCCE
Confidence            4689999965 8999999999999999996432  35666676544 566788999999999999999999999999999


Q ss_pred             eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------Ch
Q 011610          154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------SQ  225 (481)
Q Consensus       154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------~g  225 (481)
                      +||.++++.+++++|..++++.||+|+++++|++|  ++  +.|.|.+..    ....++||+||+|||+        +|
T Consensus        78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~----~~~~~~a~~vIlAtGG~s~p~~Gs~g  149 (376)
T TIGR03862        78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPD----GQSTIEADAVVLALGGASWSQLGSDG  149 (376)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECC----CceEEecCEEEEcCCCccccccCCCc
Confidence            99999999999999999999999999999999999  22  457777642    1346999999999995        67


Q ss_pred             hHHHHHHHcCCCcccCCCceeEeeeCcc-ccc-cccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhccc
Q 011610          226 QGHRLAAQLGHSIVDPVPSLFTFKIADS-QLT-ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRL  303 (481)
Q Consensus       226 ~g~~la~~~G~~i~~~~p~l~~~~~~~~-~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~l  303 (481)
                      +||.+|+++||+++|+.|+++|+.+++. ++. .|+|++++++.+++  +.       ..+.||++|||||+|||+||++
T Consensus       150 ~gy~la~~lGh~i~~~~PaL~pl~~~~~~~~~~~L~Gv~~~~~~~~~--~~-------~~~~GellFTh~GiSGpavl~l  220 (376)
T TIGR03862       150 AWQQVLDQRGVSVAPFAPANCGFLVDWSAHFASRFAGEPLKRVNATA--GT-------QQTRGEIVITARGLEGGLIYAL  220 (376)
T ss_pred             HHHHHHHHCCCcccCCcCeeceEEccCchhhHhhcCCCcccceEEEe--CC-------eeEeeeEEEECCCccHHHHHHH
Confidence            8999999999999999999999999863 444 59999998766654  21       2457999999999999999999


Q ss_pred             chhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCC
Q 011610          304 SAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVS  383 (481)
Q Consensus       304 S~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  383 (481)
                      |+++.+.+.+ ++.+.+.|||+|+++.+++.+.+.++.   +++++.+++.....+|++....+.+   +.     .+.+
T Consensus       221 S~~~~~~~~~-~~~~~i~idf~P~~~~~~l~~~l~~~~---~~k~l~~~L~~~~gi~~~~~~~~~~---~~-----~~~~  288 (376)
T TIGR03862       221 SAALREQIKA-GGSANLFLDLLPDLSLEQVTKRLAAPR---GKQSLSNHLRKALGLDGVKRALLRE---VF-----PKAA  288 (376)
T ss_pred             HHHHHHHHhc-CCceEEEEECCCCCCHHHHHHHHHhhc---ccchHHHHHHHHhCCCHHHHHHHHH---Hh-----hccC
Confidence            9997544333 455789999999999999988776533   5666666554311234443322222   11     1123


Q ss_pred             HHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHH
Q 011610          384 NNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIA  463 (481)
Q Consensus       384 ~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~A  463 (481)
                      +++++.|++.||+|+|+|.|+.+|++||||+|||+++|||++ ||||++||||||||+|||||+||||||||||+|||+|
T Consensus       289 ~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~EI~~~-~~Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~A  367 (376)
T TIGR03862       289 WSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDALDES-LMLKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAA  367 (376)
T ss_pred             HHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHHcChh-hhcccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHH
Confidence            679999999999999999999999999999999999999965 6699999999999999999999999999999999999


Q ss_pred             HHHHhHHh
Q 011610          464 GTSIGKLS  471 (481)
Q Consensus       464 G~~aa~~~  471 (481)
                      |++++.+.
T Consensus       368 G~~~~~~~  375 (376)
T TIGR03862       368 GRGVHSWL  375 (376)
T ss_pred             HHHHHHhh
Confidence            99998653

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.95  E-value=9.6e-27  Score=244.88  Aligned_cols=375  Identities=16%  Similarity=0.200  Sum_probs=213.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC---CCCceEEecCCceeeccCCC-----cchhHHhhcc---C-
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK---PLSKVKISGGGRCNVTNGHC-----ADKMILAGHY---P-  116 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~---~g~k~~~sG~g~~n~~~~~~-----~~~~~~~~~~---~-  116 (481)
                      .++||+|||+|++|++||+.|++  .|.+|+||||..   .|+....+++.+|...+...     .+...+...+   . 
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTG   80 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence            56899999999999999999999  799999999764   45544445444443332110     0111222111   0 


Q ss_pred             -CCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeec------CCChHHHHHHHHHHHHhCCCEEEcCceEEEEE
Q 011610          117 -RGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTAS  189 (481)
Q Consensus       117 -~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~  189 (481)
                       .....+.+.+..  ...+.++|+.++|+++.....+..++.      ......+...|.+.+++.|++++++++|++|.
T Consensus        81 ~~~~~~~~~~~~~--~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~  158 (466)
T PRK08274         81 GRTDEALARLLIR--ESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALE  158 (466)
T ss_pred             CCCCHHHHHHHHH--cCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEE
Confidence             112333333322  335778999999988765433322211      12256788899999999999999999999998


Q ss_pred             ecCCCCeEEEEEeecccCceEEEEcCeEEEccCC---------------------------ChhHHHHHHHcCCCcccCC
Q 011610          190 SDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAAQLGHSIVDPV  242 (481)
Q Consensus       190 ~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~g~g~~la~~~G~~i~~~~  242 (481)
                      .++ +..+.|.+.. .++....+.|+.||+|||+                           +|+|+.++.++|..+....
T Consensus       159 ~~~-g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~~~~~~  236 (466)
T PRK08274        159 LDD-GRFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLDAGADRIGDP  236 (466)
T ss_pred             ecC-CeEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHHHHHHcCCCccCCc
Confidence            765 4455666532 2233457899999999983                           3678899999998864311


Q ss_pred             --CceeEeeeCccccc--cc-cCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCce
Q 011610          243 --PSLFTFKIADSQLT--EL-SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYK  317 (481)
Q Consensus       243 --p~l~~~~~~~~~~~--~l-~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~  317 (481)
                        +..+++....+...  .+ .....+ ..+.+..+|    +++..+.++..++++...++.+++........+.+....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~vn~~G----~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~  311 (466)
T PRK08274        237 SQCHAVAIDARAPLYDGGICTRIDCVP-LGIVVNRDG----ERFYDEGEDFWPKRYAIWGRLVAQQPGQIAYQIFDAKAI  311 (466)
T ss_pred             cceeeEeecCCCCccCCcceeeecccc-eEEEEcCCC----cEEEecCCccccchHHHHHHHHHcCCCceEEEEeCchhH
Confidence              11112211111100  00 000011 112232233    456666666666777666666554431100000000000


Q ss_pred             eEEEEecC---CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHH------
Q 011610          318 GMLTVDFV---PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLI------  388 (481)
Q Consensus       318 ~~~~~d~~---p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------  388 (481)
                      .......+   -.-+.++|.+                                  +.|++++...+.+  +.++      
T Consensus       312 ~~~~~~~~~~~~adtleeLA~----------------------------------~~gi~~~~l~~tv--~~yN~~~~~g  355 (466)
T PRK08274        312 GRFMPPVFPPIQADTLEELAE----------------------------------KLGLDPAAFLRTV--AAFNAAVRPG  355 (466)
T ss_pred             hhcCcccCCccccCCHHHHHH----------------------------------HhCcCHHHHHHHH--HHHHHhcccc
Confidence            00000001   1112233332                                  2233222111111  0111      


Q ss_pred             --------------------HHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEe-e-c
Q 011610          389 --------------------SIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL-N-V  444 (481)
Q Consensus       389 --------------------~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l-d-v  444 (481)
                                          .+...+.+-||+.....+  ....|.||+.+++- .+++  +.++|||||+|||+. . +
T Consensus       356 ~~~~~~~d~~~~~~~~~~~~~~~~~i~~~Pfya~~~~p--~~~~t~GGl~~d~~-~~vl~~~g~~I~GLYAaGe~~gg~~  432 (466)
T PRK08274        356 PFDPTVLDDCGTEGLTPPKSHWARPIDTPPFYAYPVRP--GITFTYLGLKVDED-ARVRFADGRPSPNLFAAGEMMAGNV  432 (466)
T ss_pred             CCCcccccccccccCCCCcccccCccCCCCeEEEEecc--ceeeecccEEECCC-ceEECCCCCCCCCceeccccccccc
Confidence                                122234566777665544  36789999999863 2333  467999999999985 3 6


Q ss_pred             cc--CcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610          445 DG--VTGGFNFQNAWSGGYIAGTSIGKLSND  473 (481)
Q Consensus       445 ~g--~~GGynl~~A~~sG~~AG~~aa~~~~~  473 (481)
                      +|  +.||.+|.+|+++||+||++|++++..
T Consensus       433 ~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~  463 (466)
T PRK08274        433 LGKGYPAGVGLTIGAVFGRIAGEEAARHAQH  463 (466)
T ss_pred             ccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence            55  668899999999999999999988754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.94  E-value=3.2e-24  Score=230.54  Aligned_cols=356  Identities=19%  Similarity=0.240  Sum_probs=209.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CC-ceEEecCCceeeccCCCcc-hhHHh------hccCCCCh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LS-KVKISGGGRCNVTNGHCAD-KMILA------GHYPRGHK  120 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~-k~~~sG~g~~n~~~~~~~~-~~~~~------~~~~~~~~  120 (481)
                      ++||+|||||+||++||++|++.++|.+|+||||... ++ +....|+..+..++....+ .....      ..+.. +.
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~-d~   81 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLA-DQ   81 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCC-CH
Confidence            5799999999999999999998434689999998755 33 4445555566554432222 11111      11221 23


Q ss_pred             hchhhHHhcCChHHHHHHHHhcCCcceeecCCee--------------eecCCChHHHHHHHHHHHHhCCCEEEcCceEE
Q 011610          121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVT  186 (481)
Q Consensus       121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~  186 (481)
                      .+++.+ .... .+.++|+.++|+++.....+.+              |+.+.....++..|.+.+++.||++++++.|+
T Consensus        82 ~~v~~l-~~~a-~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~  159 (575)
T PRK05945         82 DAVAIL-TQEA-PDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVM  159 (575)
T ss_pred             HHHHHH-HHHH-HHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEE
Confidence            333332 2222 3567889999998876443322              23333457888999999999999999999999


Q ss_pred             EEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCc
Q 011610          187 TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIAD  252 (481)
Q Consensus       187 ~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~  252 (481)
                      +|..++ +...++...+..++....+.|+.||+|||+              +|+|+.++.++|.++..+..  +++...-
T Consensus       160 ~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~--~qf~pt~  236 (575)
T PRK05945        160 RLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEF--VQFHPTG  236 (575)
T ss_pred             EEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcc--eEEeeee
Confidence            998765 444555532211222346899999999995              46789999999999866542  2322110


Q ss_pred             cccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccc-----cchhhcccchhhHHHhHccCc--------eeE
Q 011610          253 SQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGL-----SGPVILRLSAWGARYLFSSCY--------KGM  319 (481)
Q Consensus       253 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~gl-----sG~~il~lS~~~~~~~~~~~~--------~~~  319 (481)
                       ...  .+.-+. ..+.  ..+    ...++..|+.++.+|.-     ....+  +++.+..++.....        ...
T Consensus       237 -~~~--~~~l~~-~~~r--g~g----~~lvn~~G~RF~~~y~~~~~el~~rd~--v~~ai~~~~~~g~g~~~~~~~~~~~  304 (575)
T PRK05945        237 -LYP--VGVLIS-EAVR--GEG----AYLINSEGDRFMADYAPSRMELAPRDI--TSRAITLEIRAGRGINPDGSAGGPF  304 (575)
T ss_pred             -ecC--CCeEEe-eecc--cCc----eEEECCCCCCcccccCccccccCchhH--HHHHHHHHHHhcCCCCCcccCCCCE
Confidence             000  111100 0000  000    11223345555544421     11111  23333333322111        123


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeE
Q 011610          320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL  399 (481)
Q Consensus       320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~  399 (481)
                      +.+|+- .+..+.+.    .                  .+| .+++.+.+..|+|+.                   ..++
T Consensus       305 v~ld~~-~~~~~~~~----~------------------~~~-~~~~~l~~~~gid~~-------------------~~~i  341 (575)
T PRK05945        305 VYLDLR-HMGKEKIM----S------------------RVP-FCWEEAHRLVGVDAV-------------------TEPM  341 (575)
T ss_pred             EEEECC-CCCHHHHH----H------------------HhH-HHHHHHHHHhCcCCC-------------------CceE
Confidence            455542 22222111    1                  011 133444555678763                   2345


Q ss_pred             EEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          400 EVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       400 ~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      +|...     +..|.|||.+++ +.+++  ..+.|||||+|||+.  .++|  +.||..|.+|+++|++||++|+++++
T Consensus       342 ~v~p~-----~h~t~GGi~vd~-~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~  414 (575)
T PRK05945        342 PVRPT-----VHYCMGGIPVNT-DGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ  414 (575)
T ss_pred             Eeecc-----ceecCCCeeECC-CceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence            55433     568999999874 23333  356899999999986  4676  67999999999999999999998763

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.94  E-value=4.1e-24  Score=231.22  Aligned_cols=188  Identities=21%  Similarity=0.246  Sum_probs=127.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCCcc-hhHHhh------ccCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCAD-KMILAG------HYPRGH  119 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~~~-~~~~~~------~~~~~~  119 (481)
                      .++||+|||+|+||++||+.|++  .|.+|+||||...++  +..+.|+..|++.+....+ +.....      .+. .+
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l-~d   83 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFL-NN   83 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccC-Cc
Confidence            46899999999999999999999  799999999875543  4555666677765432222 111211      111 12


Q ss_pred             hhchhhHHhcCChHHHHHHHHhcCCcceeecCCee---------eec-----CCChHHHHHHHHHHHHhC--------C-
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV-----SDSSSSVIDCLLTEAKHR--------G-  176 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~-----~~~a~~~~~~l~~~~~~~--------G-  176 (481)
                      ..+++. +.... .+.+.|+.++|+++....++.+         +|.     ......+++.|.+.+++.        | 
T Consensus        84 ~~~v~~-~~~~s-~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~  161 (626)
T PRK07803         84 WRMAEL-HAKEA-PDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGD  161 (626)
T ss_pred             HHHHHH-HHHHh-HHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccC
Confidence            233322 22223 3555799999999875443322         332     223567888998888776        7 


Q ss_pred             ----CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCc
Q 011610          177 ----VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSI  238 (481)
Q Consensus       177 ----v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i  238 (481)
                          |++++++.|+++..++ +...++...+..++....+.|+.||+|||+              +|+|+.++.++|+.+
T Consensus       162 ~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l  240 (626)
T PRK07803        162 YEARIKVFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATL  240 (626)
T ss_pred             CcCceEEEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCCcE
Confidence                9999999999998764 344455443211222347899999999995              578999999999998


Q ss_pred             ccCC
Q 011610          239 VDPV  242 (481)
Q Consensus       239 ~~~~  242 (481)
                      ..+.
T Consensus       241 ~~me  244 (626)
T PRK07803        241 INME  244 (626)
T ss_pred             eCCc
Confidence            7653

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.93  E-value=1.2e-23  Score=225.52  Aligned_cols=354  Identities=19%  Similarity=0.204  Sum_probs=207.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCCcchhHHhhccC-----CCChhc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKEF  122 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~-----~~~~~~  122 (481)
                      .++||+|||+|+|||+||+.+++.++|.+|+|+||... +.+...+++|.|+..+.. .++..+.....     ..+..+
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~-ds~e~~~~dt~~~g~~~~d~~l   80 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDD-DSLDEHFHDTVSGGDWLCEQDV   80 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCC-CCHHHHHHHHHHhcCCcCcHHH
Confidence            36899999999999999999998444789999998754 456667777777665432 12223332221     123334


Q ss_pred             hhhHHhcCChHHHHHHHHhcCCcceeecCCee--------------eecCCChHHHHHHHHHHHHh-CCCEEEcCceEEE
Q 011610          123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTT  187 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~  187 (481)
                      ++.+ .... .+.++|+.++|+++....+|.+              ++.......+++.|.+.+.+ .+++++.++.+++
T Consensus        81 v~~l-~~~s-~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~  158 (580)
T TIGR01176        81 VEYF-VAEA-PKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTD  158 (580)
T ss_pred             HHHH-HHHh-HHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEE
Confidence            4333 2223 4677899999999876443322              11112456788899888776 4899999999999


Q ss_pred             EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCcc
Q 011610          188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADS  253 (481)
Q Consensus       188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~  253 (481)
                      +..++ +...+|...+..++....+.|+.||+|||+              +|+++.++.++|..+..+..  +++.... 
T Consensus       159 Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~--~q~hPt~-  234 (580)
T TIGR01176       159 LLVDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEF--VQYHPTG-  234 (580)
T ss_pred             EEeeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcc--eEEEccc-
Confidence            98765 455566543212233367999999999994              57899999999998865542  2322110 


Q ss_pred             ccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchh-----------hcc----cchhhHHHhHccCc--
Q 011610          254 QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPV-----------ILR----LSAWGARYLFSSCY--  316 (481)
Q Consensus       254 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~-----------il~----lS~~~~~~~~~~~~--  316 (481)
                       ... .+.-+. ..++    +  .+...++..|+.+...|. .++.           .|.    +++.+..++.+.+.  
T Consensus       235 -~~~-~~~l~~-e~~r----g--~g~~lvn~~G~RF~~~y~-~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~  304 (580)
T TIGR01176       235 -LPG-TGILMT-EGCR----G--EGGILVNKDGYRYLQDYG-MGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTID  304 (580)
T ss_pred             -cCC-CceEEe-eccc----C--CceEEECCCCCCcccccc-cccccccccccchhhhcchhHHHHHHHHHHHHhcCCCC
Confidence             000 111000 0000    0  000122334555444442 1111           111    23333334333211  


Q ss_pred             ---eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHH
Q 011610          317 ---KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIAR  392 (481)
Q Consensus       317 ---~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~  392 (481)
                         ...+.+|+- .+..+.+.+.+                      |  .+..+++. .|+|+.+               
T Consensus       305 ~~~g~~v~ld~~-~~~~~~~~~~~----------------------~--~~~~~~~~~~gid~~~---------------  344 (580)
T TIGR01176       305 TPYGDVVYLDLR-HLGEDLLDERL----------------------P--FICELAKAYVHVDPVK---------------  344 (580)
T ss_pred             CCCCCEEEEEcC-CCCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC---------------
Confidence               113455542 23333332111                      0  01122333 4666532               


Q ss_pred             HhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHh
Q 011610          393 LLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIG  468 (481)
Q Consensus       393 ~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa  468 (481)
                          -+++|...     +..|.|||.+|+-    . .+.|||||+|||+.  .++|  +.||.+|.+|+.+|++||++|+
T Consensus       345 ----~~i~v~p~-----~h~~~GGi~~d~~----~-~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa  410 (580)
T TIGR01176       345 ----EPIPVRPT-----VHYTMGGIETDIN----C-ETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAA  410 (580)
T ss_pred             ----CeEEEehH-----HhccCCCeeECcC----c-ccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHH
Confidence                24555444     4578999987642    2 26899999999986  4676  5689999999999999999999


Q ss_pred             HHhhH
Q 011610          469 KLSND  473 (481)
Q Consensus       469 ~~~~~  473 (481)
                      +++.+
T Consensus       411 ~~~~~  415 (580)
T TIGR01176       411 ERAAR  415 (580)
T ss_pred             Hhhcc
Confidence            88643

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.93  E-value=1.7e-24  Score=229.30  Aligned_cols=379  Identities=18%  Similarity=0.188  Sum_probs=206.2

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCC-ceEEecCCceeeccCC-------CcchhHHhhcc-
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLS-KVKISGGGRCNVTNGH-------CADKMILAGHY-  115 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~-k~~~sG~g~~n~~~~~-------~~~~~~~~~~~-  115 (481)
                      .++.++||||||+|.+|++||+.+++  .|.+|+||||.. .|+ +...+|+.  +..+..       ..+...+...+ 
T Consensus        57 ~~~~~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~s~~s~Gg~--~~~~~~~~~~~g~~d~~~~~~~~~~  132 (506)
T PRK06481         57 ELKDKYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGNTMKASSGM--NASETKFQKAQGIADSNDKFYEETL  132 (506)
T ss_pred             cccccCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccccCCcc--ccCChHHHHhcCCCCCHHHHHHHHH
Confidence            34467999999999999999999999  799999999764 443 33333322  222211       00111222221 


Q ss_pred             ----CCCChhchhhHHhcCChHHHHHHHHhcCCcceee--cCC----e-eeecC--CChHHHHHHHHHHHHhCCCEEEcC
Q 011610          116 ----PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE--DDG----R-VFPVS--DSSSSVIDCLLTEAKHRGVVLQTG  182 (481)
Q Consensus       116 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g----~-~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~  182 (481)
                          ...++.+++.+..  ...+.++|++++|+++...  ..+    + .+|..  .....+++.|.+.+++.|++++++
T Consensus       133 ~~~~~~~d~~l~~~~~~--~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~  210 (506)
T PRK06481        133 KGGGGTNDKALLRYFVD--NSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVN  210 (506)
T ss_pred             HhcCCCCCHHHHHHHHh--ccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeC
Confidence                1122333333222  2346789999999876531  111    1 22322  123568889999999999999999


Q ss_pred             ceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------------------ChhHHHHHHHcCC
Q 011610          183 KVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQLGH  236 (481)
Q Consensus       183 ~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~g~g~~la~~~G~  236 (481)
                      ++|++|..++ +....|.+.. ..+....+.|+.||+|+|+                          +|+|+.|+.++|.
T Consensus       211 t~v~~l~~~~-g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~~aGA  288 (506)
T PRK06481        211 ADVTKITEKD-GKVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKLGG  288 (506)
T ss_pred             CeeEEEEecC-CEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCChHHHHHHHHcCC
Confidence            9999998754 3444565542 1112357999999999994                          3678999999999


Q ss_pred             CcccCCCce-eEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccC
Q 011610          237 SIVDPVPSL-FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSC  315 (481)
Q Consensus       237 ~i~~~~p~l-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~  315 (481)
                      .+..+.... .+....+........++-. ..+-+..+|    +++..   |.. +      ..  .+++.+.   ...+
T Consensus       289 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~i~Vn~~G----~RF~n---E~~-~------~~--~~~~~~~---~~~~  348 (506)
T PRK06481        289 TTVDMDQIQIHPTVQQSKSYLIGEAVRGE-GAILVNQKG----KRFGN---ELD-T------RD--KVSAAIN---KLPE  348 (506)
T ss_pred             CccCchhhhhCCCccCCCcceehhhccCC-ceEEECCCC----CCCCC---CCc-c------HH--HHHHHHH---hCcC
Confidence            875432111 0000000000000011101 112222222    22222   211 0      00  0111111   0111


Q ss_pred             ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH--
Q 011610          316 YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL--  393 (481)
Q Consensus       316 ~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--  393 (481)
                      ....+.+|-      . ..+... ...        .+...+.......+++|++..+++++...+.+  +.+++.+..  
T Consensus       349 ~~~~~i~D~------~-~~~~~~-~~~--------~~~~~g~~~kadTleeLA~~~gid~~~L~~tv--~~yN~~~~~g~  410 (506)
T PRK06481        349 KYAYVVFDS------G-VKDRVK-AIA--------QYEEKGFVEEGKTIDELAKKINVPAETLTKTL--DTWNKAVKNKK  410 (506)
T ss_pred             CcEEEEECH------H-HHhhhh-hhH--------HHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCC
Confidence            122333331      1 100000 000        00000002223445667777777766544433  334444322  


Q ss_pred             -------------hccCeEEEcccCCCceeEEecCCCCCCCCCc-ccccccCCCCeEEEEEEe-eccc--CcchHHHHHH
Q 011610          394 -------------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNA  456 (481)
Q Consensus       394 -------------l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A  456 (481)
                                   +.+-||+.....+.  ...|.||+.+++--. ..-+.++|||||+|||+. .++|  +.||.++.+|
T Consensus       411 D~~fgr~~~~~~~i~~~PfYai~~~p~--~~~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~  488 (506)
T PRK06481        411 DEAFGRTTGMDNDLSTGPYYAIKIAPG--IHYTMGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADI  488 (506)
T ss_pred             CcccCCCCCCCCCCcCCCEEEEEEecc--eeecccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHH
Confidence                         33455555444332  678999999885321 122468999999999975 4554  6689999999


Q ss_pred             HHHHHHHHHHHhHHhh
Q 011610          457 WSGGYIAGTSIGKLSN  472 (481)
Q Consensus       457 ~~sG~~AG~~aa~~~~  472 (481)
                      +.+||+||++||++++
T Consensus       489 ~~~GriAg~~aa~~~~  504 (506)
T PRK06481        489 IIFGRQAGTQSAEFAK  504 (506)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999998864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.93  E-value=2e-23  Score=225.40  Aligned_cols=358  Identities=15%  Similarity=0.156  Sum_probs=204.6

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccC-CCcchhHHhhcc-----CCCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNG-HCADKMILAGHY-----PRGH  119 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~-~~~~~~~~~~~~-----~~~~  119 (481)
                      ...++||+|||+|.||++||+++++  .|++|+||||..+.+ ....+++|-+..... ...++..+....     ...+
T Consensus        47 ~~~~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d  124 (635)
T PLN00128         47 VDHTYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGD  124 (635)
T ss_pred             eeeecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCC
Confidence            4457899999999999999999999  789999999875543 323333333221111 111121211111     1123


Q ss_pred             hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeee----------------------ecCCChHHHHHHHHHHHHhCCC
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF----------------------PVSDSSSSVIDCLLTEAKHRGV  177 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~----------------------p~~~~a~~~~~~l~~~~~~~Gv  177 (481)
                      +.+++.+..  ...+.++|+.++|+++....+|.++                      ........++..|.+.+.+.||
T Consensus       125 ~~lv~~l~~--~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv  202 (635)
T PLN00128        125 QDAIQYMCR--EAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNT  202 (635)
T ss_pred             HHHHHHHHH--hHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCC
Confidence            444444322  2346788999999988654333211                      0112356788999998988999


Q ss_pred             EEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610          178 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP  243 (481)
Q Consensus       178 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p  243 (481)
                      +|+.++.+++|..++++...+|...+..++....+.|+.||+|||+              +|+|+.+|.++|..+..+. 
T Consensus       203 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~me-  281 (635)
T PLN00128        203 QFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLE-  281 (635)
T ss_pred             EEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCc-
Confidence            9999999999887631345566653312233457899999999994              5789999999999986543 


Q ss_pred             ceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcc------cchhhHHHhHccCc-
Q 011610          244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILR------LSAWGARYLFSSCY-  316 (481)
Q Consensus       244 ~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~------lS~~~~~~~~~~~~-  316 (481)
                       ++++....-.  . .+.-+. ..++  ..+    ..++...|+.++.+|+   |....      +++.+..++.+... 
T Consensus       282 -fvqfhPt~~~--~-~~~l~~-ea~r--g~g----~~lvN~~GeRF~~~y~---~~~~el~~rd~v~~ai~~e~~~~~g~  347 (635)
T PLN00128        282 -FVQFHPTGIY--G-AGCLIT-EGSR--GEG----GILRNSEGERFMERYA---PTAKDLASRDVVSRSMTMEIREGRGV  347 (635)
T ss_pred             -ceEEeccccc--C-CCeEEe-eecc--CCC----cEEECCCCCCcccccC---cccccccchhHHHHHHHHHHHhcCCC
Confidence             3333221000  0 111110 0000  000    1122334555444432   11001      23333333322211 


Q ss_pred             ---eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH
Q 011610          317 ---KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL  393 (481)
Q Consensus       317 ---~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  393 (481)
                         ...+.+|+- .++.+.|.+.+..                       +.+......|+|+.                 
T Consensus       348 ~~~~~~v~ld~~-~l~~e~l~~~~~~-----------------------~~~~~~~~~G~D~~-----------------  386 (635)
T PLN00128        348 GPEKDHIYLHLN-HLPPEVLKERLPG-----------------------ISETAAIFAGVDVT-----------------  386 (635)
T ss_pred             CCCCCEEEEEcC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCCC-----------------
Confidence               112445542 3444444322211                       11111111456532                 


Q ss_pred             hccCeEEEcccCCCceeEEecCCCCCCCCCcccc------cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHH
Q 011610          394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM------ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIA  463 (481)
Q Consensus       394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~------esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~A  463 (481)
                        +-|++|...     +..|+|||.+++ +-.+.      ..+.|||||+|||+.  .++|  +.||..|.+|+.+|++|
T Consensus       387 --~~pi~v~P~-----~hyt~GGi~vd~-~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~A  458 (635)
T PLN00128        387 --KEPIPVLPT-----VHYNMGGIPTNY-HGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC  458 (635)
T ss_pred             --CCceEeecc-----ceEecCCcccCC-CCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHH
Confidence              224555544     568999998874 22222      126799999999986  5787  67999999999999999


Q ss_pred             HHHHhHHhh
Q 011610          464 GTSIGKLSN  472 (481)
Q Consensus       464 G~~aa~~~~  472 (481)
                      |++|++++.
T Consensus       459 g~~aa~~~~  467 (635)
T PLN00128        459 ANRVAEIAK  467 (635)
T ss_pred             HHHHHHhhc
Confidence            999987653

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.93  E-value=1e-23  Score=226.54  Aligned_cols=354  Identities=18%  Similarity=0.199  Sum_probs=204.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCCcchhHHhhccC-----CCChhc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKEF  122 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~-----~~~~~~  122 (481)
                      .++||+|||+|.|||+||+.+++.+++.+|+||||... +....++++|.+...... .++..+.....     ..+..+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~-ds~e~~~~d~~~~g~~~~d~~~   81 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDH-DSFDYHFHDTVAGGDWLCEQDV   81 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCC-CCHHHHHHHHHHhcccCCCHHH
Confidence            56899999999999999999998444689999998744 445556666665544321 12222222211     112333


Q ss_pred             hhhHHhcCChHHHHHHHHhcCCcceeecCCee-------------ee-cCCChHHHHHHHHHHHHhC-CCEEEcCceEEE
Q 011610          123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV-------------FP-VSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTT  187 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-------------~p-~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~  187 (481)
                      ++.+. . ...+.++|+.++|+++....++.+             +. .......+...|.+.+.+. +++++.++.+++
T Consensus        82 v~~~~-~-~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~  159 (582)
T PRK09231         82 VEYFV-H-HCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLD  159 (582)
T ss_pred             HHHHH-H-HHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEE
Confidence            33322 2 234677899999999865433321             11 1123457888888877764 899999999999


Q ss_pred             EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCcc
Q 011610          188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADS  253 (481)
Q Consensus       188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~  253 (481)
                      +..++ +...+|...+..++....+.|+.||+|||+              +|+|+.+|.++|..+..+..  +++...  
T Consensus       160 Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~--~q~~Pt--  234 (582)
T PRK09231        160 ILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEF--VQYHPT--  234 (582)
T ss_pred             EEEeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccc--eeeecc--
Confidence            98765 444455542211222357999999999994              57889999999998865432  332211  


Q ss_pred             ccccccCceeccEEEEEEecCccCCCCccceecCeEEEecccc------chh--hcc------cchhhHHHhHccCc---
Q 011610          254 QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLS------GPV--ILR------LSAWGARYLFSSCY---  316 (481)
Q Consensus       254 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~gls------G~~--il~------lS~~~~~~~~~~~~---  316 (481)
                      .. .-.+.-+. ..++  ..+    ...++..|+.+...|++.      .|-  .+.      +++.+..++.+...   
T Consensus       235 ~~-~~~~~l~~-e~~r--g~g----~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~~  306 (582)
T PRK09231        235 GL-PGSGILMT-EGCR--GEG----GILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIST  306 (582)
T ss_pred             ee-CCCCceee-eccc--CCC----eEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCccC
Confidence            00 00111110 0000  000    112233455544444321      010  011      22222223222110   


Q ss_pred             --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHH
Q 011610          317 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARL  393 (481)
Q Consensus       317 --~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~  393 (481)
                        ...+.+|+ ..+..+.+.+.+                      |  .+..+++. .|+|+.+                
T Consensus       307 ~~g~~v~ld~-~~~~~~~~~~~~----------------------~--~i~e~~~~~~G~d~~~----------------  345 (582)
T PRK09231        307 PRGDVVYLDL-RHLGEKKLHERL----------------------P--FICELAKAYVGVDPVK----------------  345 (582)
T ss_pred             CCCCEEEEEC-CcCCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC----------------
Confidence              11355664 233333222111                      1  12334444 5777642                


Q ss_pred             hccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhH
Q 011610          394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGK  469 (481)
Q Consensus       394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~  469 (481)
                         -++++...     +..|.|||.+|+-    ++ +.|||||+|||+.  .++|  +.||..|.+|+++|++||++|++
T Consensus       346 ---~~i~v~p~-----~h~t~GGi~vd~~----~~-t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~  412 (582)
T PRK09231        346 ---EPIPVRPT-----AHYTMGGIETDQN----CE-TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE  412 (582)
T ss_pred             ---Ceeeeece-----eeeeCCCEEECCC----Cc-cccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence               13444333     6689999988742    22 7899999999986  4666  67999999999999999999998


Q ss_pred             Hhh
Q 011610          470 LSN  472 (481)
Q Consensus       470 ~~~  472 (481)
                      +++
T Consensus       413 ~~~  415 (582)
T PRK09231        413 RAA  415 (582)
T ss_pred             hhh
Confidence            864

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.93  E-value=2.2e-23  Score=225.05  Aligned_cols=359  Identities=17%  Similarity=0.166  Sum_probs=206.5

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCcee-eccCCCcchhHHhhc-----cCCCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCN-VTNGHCADKMILAGH-----YPRGH  119 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n-~~~~~~~~~~~~~~~-----~~~~~  119 (481)
                      ...++||+|||+|.|||+||+.+++  .|.+|+||||.... .....+++|-.. ..+....++......     -...+
T Consensus        26 ~~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d  103 (617)
T PTZ00139         26 IDHTYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGD  103 (617)
T ss_pred             cccccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCC
Confidence            3357899999999999999999999  79999999987554 333333333322 121111111111111     11123


Q ss_pred             hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeee----------------------cCCChHHHHHHHHHHHHhCCC
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP----------------------VSDSSSSVIDCLLTEAKHRGV  177 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~~~~~~l~~~~~~~Gv  177 (481)
                      +.+++.+..  ...+.++|+.++|+++....+|.++.                      .......++..|.+.+++.||
T Consensus       104 ~~lv~~l~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv  181 (617)
T PTZ00139        104 QDAIQYMCR--EAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDC  181 (617)
T ss_pred             HHHHHHHHH--HHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCC
Confidence            344443322  23577899999999986543332221                      011345788999999999999


Q ss_pred             EEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610          178 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP  243 (481)
Q Consensus       178 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p  243 (481)
                      +++.++.+++|..++++...+|...+..++....+.|+.||+|||+              +|+++.++.++|..+..+. 
T Consensus       182 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me-  260 (617)
T PTZ00139        182 NFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLE-  260 (617)
T ss_pred             EEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCc-
Confidence            9999999999987321345566653212233457899999999985              4788999999999986543 


Q ss_pred             ceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc--
Q 011610          244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY--  316 (481)
Q Consensus       244 ~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~--  316 (481)
                       ++++.... ...  .+.-+. ..++  ..+    ...+...|+.++.+|.     +....+  +++.+..++.+...  
T Consensus       261 -f~q~~pt~-~~~--~~~l~~-e~~r--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~g~g~~  327 (617)
T PTZ00139        261 -FVQFHPTG-IYG--AGCLIT-EGCR--GEG----GILRNSEGERFMERYAPTAKDLASRDV--VSRAMTIEILEGRGCG  327 (617)
T ss_pred             -eEEecccc-ccC--CCcEEE-eecc--CCC----cEEECCCCCCcccccCccccccccchH--HHHHHHHHHHhcCCCC
Confidence             23322110 000  111110 0000  000    1123344555544442     111111  23333333332211  


Q ss_pred             --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHh
Q 011610          317 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLL  394 (481)
Q Consensus       317 --~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l  394 (481)
                        ...+.+|+- .++.+.|++.+..                       +.+......|+|+.+                 
T Consensus       328 ~~~~~v~lD~~-~~~~~~l~~~~~~-----------------------~~~~~~~~~G~D~~~-----------------  366 (617)
T PTZ00139        328 PNKDHIYLDLT-HLPPETLHERLPG-----------------------ISETAKIFAGVDVTK-----------------  366 (617)
T ss_pred             CCCCEEEEECC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCCCC-----------------
Confidence              123556653 3444444333311                       001111114666532                 


Q ss_pred             ccCeEEEcccCCCceeEEecCCCCCCCCCcccc------cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHH
Q 011610          395 KHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM------ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAG  464 (481)
Q Consensus       395 ~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~------esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG  464 (481)
                        -+++|...     +..|+|||.+++- ..+.      ..+.|||||+|||+.  .++|  +.||..|.+|+.+|++||
T Consensus       367 --~~i~v~p~-----~h~t~GGi~vd~~-~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag  438 (617)
T PTZ00139        367 --EPIPVLPT-----VHYNMGGIPTNWK-TQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAA  438 (617)
T ss_pred             --CCeEEecc-----cceecCCeEEcCC-ceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHH
Confidence              13445433     5679999998753 2333      235799999999986  4676  779999999999999999


Q ss_pred             HHHhHHhh
Q 011610          465 TSIGKLSN  472 (481)
Q Consensus       465 ~~aa~~~~  472 (481)
                      ++|++++.
T Consensus       439 ~~aa~~~~  446 (617)
T PTZ00139        439 NTVMEILK  446 (617)
T ss_pred             HHHHHhhc
Confidence            99998753

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.93  E-value=4.1e-23  Score=222.18  Aligned_cols=351  Identities=20%  Similarity=0.238  Sum_probs=200.4

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-C-ceEEecCCceeeccCCCcch-hHHhh------ccCCCChhc
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-S-KVKISGGGRCNVTNGHCADK-MILAG------HYPRGHKEF  122 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~-k~~~sG~g~~n~~~~~~~~~-~~~~~------~~~~~~~~~  122 (481)
                      ||+|||+|+||++||+.|++  .|.+|+||||.... . +....|+..+...+....+. ..+..      .+. .+..+
T Consensus         1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~-~d~~~   77 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYL-ADQDA   77 (566)
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCC-CCHHH
Confidence            89999999999999999999  79999999987543 2 33344444555443221121 11111      111 23334


Q ss_pred             hhhHHhcCChHHHHHHHHhcCCcceeecCCee--------------eecCCChHHHHHHHHHHHHhCCCEEEcCceEEEE
Q 011610          123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTA  188 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i  188 (481)
                      ++.+..  ...+.++|+.++|+++.....+.+              |+.+.....+...|.+.+++.|+++++++.|++|
T Consensus        78 v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L  155 (566)
T TIGR01812        78 VEYMCQ--EAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDL  155 (566)
T ss_pred             HHHHHH--HHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEE
Confidence            333322  234778899999998865433322              2222245578888999898899999999999999


Q ss_pred             EecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccc
Q 011610          189 SSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQ  254 (481)
Q Consensus       189 ~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~  254 (481)
                      ..++ +...+|...+..++....+.|+.||+|||+              +|+++.++.++|..+..+...  ++... ..
T Consensus       156 ~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~--q~~p~-~~  231 (566)
T TIGR01812       156 IHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFV--QFHPT-GL  231 (566)
T ss_pred             EEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcce--EEeee-ee
Confidence            8765 444566543211222347899999999995              477899999999998665432  22211 00


Q ss_pred             cccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc-----eeEEEEec
Q 011610          255 LTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY-----KGMLTVDF  324 (481)
Q Consensus       255 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~-----~~~~~~d~  324 (481)
                      ..  .+.-+. ..++  ..+    ...+...|+.++..|.     +....+  +++.+..++.+...     ...+.+|+
T Consensus       232 ~~--~~~~~~-e~~~--~~g----~~lvn~~G~RF~~~~~~~~~e~~~r~~--~~~ai~~~~~~~~g~~~~~~~~v~~d~  300 (566)
T TIGR01812       232 YP--SGILIT-EGCR--GEG----GYLVNKNGERFMERYAPEKMELAPRDV--VSRAMWTEIREGRGVGSPPGDYVYLDL  300 (566)
T ss_pred             CC--CCcEEe-cccc--CCc----eEEECCCCCCCCcccCccccccCchhH--HHHHHHHHHHhcCCCCCCCCCEEEEEC
Confidence            00  111000 0000  000    0112223444333331     111111  23333333322211     12355554


Q ss_pred             CCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeEEEcc
Q 011610          325 VPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTLEVAG  403 (481)
Q Consensus       325 ~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~  403 (481)
                      - .+..+.+.+.                ++        .+..++.. .|+|+.+                   -++++..
T Consensus       301 ~-~~~~~~~~~~----------------~~--------~~~~~~~~~~g~d~~~-------------------~~i~v~p  336 (566)
T TIGR01812       301 R-HLGEEKIEER----------------LP--------QIRELAKYFAGVDPVK-------------------EPIPVRP  336 (566)
T ss_pred             C-CCCHHHHHHH----------------ch--------HHHHHHHHHcCCCCCC-------------------Cceeeeh
Confidence            2 2222222111                00        12234444 5776542                   1244433


Q ss_pred             cCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          404 KGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       404 ~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      .     +..|.|||.+++-- +-+..+.|||||+|||+.  .++|  +.||..|.+|+++|++||++|++++.
T Consensus       337 ~-----~h~t~GGi~id~~~-~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~  403 (566)
T TIGR01812       337 T-----AHYSMGGIPTDYTG-RVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA  403 (566)
T ss_pred             h-----hcccCCCeEECcCc-ccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence            3     56799999887422 111127899999999986  4666  57999999999999999999998764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.93  E-value=3.3e-23  Score=221.51  Aligned_cols=352  Identities=19%  Similarity=0.184  Sum_probs=198.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC--CCceEEecCCceeeccCCCcchhHHhhcc-----CCCChh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP--LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKE  121 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~--g~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~  121 (481)
                      .++||+|||+|.||++||+.+ +  .|.+|+||||...  ++....++++- +.......+...++..+     ...+..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~s~~a~gg~-~~~~~~~d~~~~~~~d~~~~~~~~~d~~   81 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGCTVMAEGGY-NAVLNPEDSFEKHFEDTMKGGAYLNDPK   81 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCccccccCceE-EEeCCCCCCHHHHHHHHHHHhcCCCCHH
Confidence            468999999999999999999 7  6899999998754  33233333322 22211111222222111     112334


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecC---------Ceeeec-----CCChHHHHHHHHHHHHhCCCEEEcCceEEE
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDD---------GRVFPV-----SDSSSSVIDCLLTEAKHRGVVLQTGKVVTT  187 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~---------g~~~p~-----~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~  187 (481)
                      +++.+...  ..+.++|+.++|+++....+         +..+|.     ......+...|.+.+++.||++++++.|++
T Consensus        82 lv~~~~~~--s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~  159 (543)
T PRK06263         82 LVEILVKE--APKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIK  159 (543)
T ss_pred             HHHHHHHH--HHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeee
Confidence            44443222  34677899999998864332         222332     123567888999989889999999999999


Q ss_pred             EEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCc
Q 011610          188 ASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIAD  252 (481)
Q Consensus       188 i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~  252 (481)
                      +..++ ++ ..+|...+..++....+.|+.||+|||+              +|+|+.++.++|..+..+..  +++....
T Consensus       160 Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~--~q~~p~~  236 (543)
T PRK06263        160 LIVDE-NREVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEM--VQFHPTG  236 (543)
T ss_pred             eEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccc--eeEecce
Confidence            98765 44 5566543211222357999999999995              57899999999999865542  2221100


Q ss_pred             c-ccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCce--eEEEEec
Q 011610          253 S-QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCYK--GMLTVDF  324 (481)
Q Consensus       253 ~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~~--~~~~~d~  324 (481)
                      . ....-.|..+. ..+.  ..+    ...+...|+.++..|.     ++...+  +++.+.+++......  ..+.+|+
T Consensus       237 ~~~~~~~~~~~~~-~~~~--~~g----~~lvn~~G~RF~~~y~~~~~e~~~~~~--~~~ai~~~~~~g~g~~~~~~~ld~  307 (543)
T PRK06263        237 MVYPYSGRGILVT-EAVR--GEG----GILYNKNGERFMKRYDPERMELSTRDV--VARAIYTEIQEGRGTNHGGVYLDV  307 (543)
T ss_pred             eccCCCCCceEEe-eeec--CCc----cEEECCCCCCcccccCcccccccchhH--HHHHHHHHHHhcCCCCCceEEEEC
Confidence            0 00001111110 0000  000    0122334444443221     111111  233333333222111  1244443


Q ss_pred             CCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEccc
Q 011610          325 VPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGK  404 (481)
Q Consensus       325 ~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~  404 (481)
                      - .++.+.+++.+.                       +++..+++ .|+|+.                   +-|+++...
T Consensus       308 ~-~~~~~~l~~~~~-----------------------~~~~~~~~-~G~D~~-------------------~~pi~v~p~  343 (543)
T PRK06263        308 T-HLPDEVIEEKLE-----------------------TMLEQFLD-VGVDIR-------------------KEPMEVAPT  343 (543)
T ss_pred             C-CCCHHHHHHHHH-----------------------HHHHHHHH-hCCCCC-------------------CCCEEEecc
Confidence            2 223333322221                       11122221 355532                   233555443


Q ss_pred             CCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          405 GQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       405 ~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                           +..|.|||.+|+-    ++ ++|||||+|||+. .++|  +.||.+|.+|+++|++||++||+++.
T Consensus       344 -----~~~t~GGi~vd~~----~~-t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~  404 (543)
T PRK06263        344 -----AHHFMGGIRINED----CE-TNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAE  404 (543)
T ss_pred             -----ccEecCCEEECCC----Cc-ccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence                 6689999987643    33 6899999999975 5665  67899999999999999999998764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.93  E-value=5.1e-23  Score=220.53  Aligned_cols=352  Identities=18%  Similarity=0.198  Sum_probs=204.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeecc--CCCcc-hhHHhh------ccCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTN--GHCAD-KMILAG------HYPRG  118 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~--~~~~~-~~~~~~------~~~~~  118 (481)
                      .++||+|||+|.||++||+.+++  .|.+|+||||... +.....+++|.+....  ....+ ...+..      .+. .
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~-~   80 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYL-V   80 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccC-C
Confidence            56899999999999999999999  7999999998744 3344444444442221  11111 111111      111 2


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCee---------eec-----CCChHHHHHHHHHHHHhCCCEEEcCce
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV-----SDSSSSVIDCLLTEAKHRGVVLQTGKV  184 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~-----~~~a~~~~~~l~~~~~~~Gv~i~~~~~  184 (481)
                      +..+++.+..  ...+.++|+.++|+++....++.+         +|.     ......++..|.+.+.+.||++++++.
T Consensus        81 d~~~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~  158 (566)
T PRK06452         81 DQDAAELLSN--KSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWF  158 (566)
T ss_pred             CHHHHHHHHH--HHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcE
Confidence            3334333322  235678899999998865433311         211     123567888898888888999999999


Q ss_pred             EEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeee
Q 011610          185 VTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI  250 (481)
Q Consensus       185 V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~  250 (481)
                      ++++..++ +...+|...+...+....+.|+.||+|||+              +|+|..+|.++|..+..+.  .+++..
T Consensus       159 ~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me--~~q~~p  235 (566)
T PRK06452        159 SLDLVTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPE--FVQFHP  235 (566)
T ss_pred             EEEEEEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCc--ceEEee
Confidence            99999865 455677665322222357899999999994              5789999999999986543  233221


Q ss_pred             CccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc--eeEEEEe
Q 011610          251 ADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY--KGMLTVD  323 (481)
Q Consensus       251 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~--~~~~~~d  323 (481)
                      ..  ... .+.-+. ..+.  ..+    ...+...|+.++.+|.     +....+  +++.+..++.+.+.  ...+.+|
T Consensus       236 t~--~~~-~~~l~~-e~~r--g~g----~ilvN~~G~RF~~e~~~~~~~l~~rd~--v~~ai~~e~~~g~g~~~~~v~lD  303 (566)
T PRK06452        236 TA--LYP-SDVLIS-EAAR--GEG----GILKNVKGERFMTKYAPKKLDLAPRDI--VSRAIITEIREGRGFPGGYVGLD  303 (566)
T ss_pred             eE--ECC-CCeEEE-Eeee--cCC----CEEECCCCCCCccccCccccccCCccH--HHHHHHHHHHhCCCCCCCeEEEE
Confidence            10  000 111000 0000  000    1122334555444432     111111  34444444433211  1346667


Q ss_pred             cCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcc
Q 011610          324 FVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAG  403 (481)
Q Consensus       324 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~  403 (481)
                      .-+. ..+.+.+.                      +|. .++.+.+..|+|+.+                  + +++|..
T Consensus       304 ~~~~-~~~~~~~~----------------------~~~-~~~~~~~~~g~D~~~------------------~-~i~v~p  340 (566)
T PRK06452        304 LTHL-GEEYIKER----------------------LAL-AVEAAKSFAGVDAFT------------------E-PIPVRP  340 (566)
T ss_pred             cccC-CHHHHHHH----------------------HHH-HHHHHHHhcCCCCCC------------------C-Ceeeec
Confidence            6432 22222211                      111 112222225676532                  1 244433


Q ss_pred             cCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          404 KGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       404 ~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      .     +..|+|||.+|+-    .+...|||||+|||+.  .++|  ++||..|..|+++|++||++|++++.
T Consensus       341 ~-----~h~~~GGi~vd~~----~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~  404 (566)
T PRK06452        341 A-----QHYYMGGIDVDID----GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK  404 (566)
T ss_pred             c-----cCEecCCeEECCC----CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            3     5689999987642    2322499999999986  4777  77999999999999999999998764

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.93  E-value=1.2e-22  Score=218.72  Aligned_cols=355  Identities=20%  Similarity=0.238  Sum_probs=203.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCC---CcEEEEeCCCC-CCceEEecCCceeeccCCCcc-hhHHhhcc-----CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPK---LNVVIIEKGKP-LSKVKISGGGRCNVTNGHCAD-KMILAGHY-----PRG  118 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g---~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~-~~~~~~~~-----~~~  118 (481)
                      .++||+|||+|+|||+||+.+++  .|   .+|+||||... +....++++|.+...+....+ +.......     ...
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~   81 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA   81 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence            46899999999999999999999  56   89999998755 445566666666544321111 11111111     112


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCee---------eecC-----CChHHHHHHHHHHHHh-CCCEEEcCc
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPVS-----DSSSSVIDCLLTEAKH-RGVVLQTGK  183 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~~-----~~a~~~~~~l~~~~~~-~Gv~i~~~~  183 (481)
                      ++.+++.+. ... .+.++|+.++|+++....+|++         +|..     .....+++.|.+.+.+ .||+++.++
T Consensus        82 d~~lv~~~~-~~s-~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~  159 (577)
T PRK06069         82 DQDAVEVFV-REA-PEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEH  159 (577)
T ss_pred             CHHHHHHHH-HHH-HHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECC
Confidence            333433332 222 3567899999998876544432         2211     1345688888888766 699999999


Q ss_pred             eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEee
Q 011610          184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK  249 (481)
Q Consensus       184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~  249 (481)
                      .|+++..++ +...+|...+..++....+.|+.||+|||+              +|+++.++.++|..+..+.  .+++.
T Consensus       160 ~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e--~~q~~  236 (577)
T PRK06069        160 FVTSLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDME--FVQFH  236 (577)
T ss_pred             EEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCc--ceeEe
Confidence            999998765 344455543211222246899999999995              4778999999999986553  23322


Q ss_pred             eCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc------ee
Q 011610          250 IADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY------KG  318 (481)
Q Consensus       250 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~------~~  318 (481)
                      ..  .+.. .|.-+. ..+.  ..+    ...++..|+.+..+|.     +....+  +++.+..++.+...      ..
T Consensus       237 pt--~~~~-~g~l~~-e~~~--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~g~g~~~~~g~~  304 (577)
T PRK06069        237 PT--GLVP-SGILIT-EAAR--GEG----GYLINKEGERFMKRYAPQKMELAPRDV--VSRAIMTEIMEGRGFKHESGLC  304 (577)
T ss_pred             ee--eeCC-CCcEEE-eecc--CCC----eEEECCCCCCcccccCccccccCCccH--HHHHHHHHHHhcCCccCCCCce
Confidence            11  0000 111110 0000  000    0122334555444332     111111  23333333322211      12


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccC
Q 011610          319 MLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHC  397 (481)
Q Consensus       319 ~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~  397 (481)
                      .+.+|.-. +..+.+.+.+                      |  .+..++.. .|+|+.+                   -
T Consensus       305 ~v~ld~~~-~~~~~~~~~~----------------------~--~i~~~~~~~~g~D~~~-------------------~  340 (577)
T PRK06069        305 YVGLDLRH-LGEEKINERL----------------------P--LIREIAKKYAGIDPVT-------------------E  340 (577)
T ss_pred             EEEEeccc-CCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC-------------------C
Confidence            34455421 2222222111                      1  11223333 5666521                   1


Q ss_pred             eEEEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEee--ccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          398 TLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       398 ~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~ld--v~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      +++|...     +..|.|||.+++- ..|.  +.++|||||+|||+..  ++|  +.||..|.+|+++|++||++|++++
T Consensus       341 ~i~v~p~-----~h~t~GGi~vd~~-~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~  414 (577)
T PRK06069        341 PIPVRPA-----AHYTMGGIHTDVY-GRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA  414 (577)
T ss_pred             ceeeeec-----cceeCCCceECCC-CcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence            3444433     5689999987643 2332  3455999999999874  676  6799999999999999999999886


Q ss_pred             h
Q 011610          472 N  472 (481)
Q Consensus       472 ~  472 (481)
                      .
T Consensus       415 ~  415 (577)
T PRK06069        415 L  415 (577)
T ss_pred             h
Confidence            4

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.92  E-value=6.1e-23  Score=221.15  Aligned_cols=356  Identities=15%  Similarity=0.159  Sum_probs=201.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccCCCcc-hhHHhh------ccCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCAD-KMILAG------HYPRGH  119 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~~~~~-~~~~~~------~~~~~~  119 (481)
                      ..++||+|||+|.|||+||+.+++  .|.+|+||||....+ ....+.+|-.........+ +..+..      .+. .+
T Consensus        10 ~~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~-~d   86 (598)
T PRK09078         10 DHKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWL-GD   86 (598)
T ss_pred             ccccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCC-CC
Confidence            356899999999999999999999  789999999875442 2222323322111110112 111111      111 23


Q ss_pred             hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeee----------------------ecCCChHHHHHHHHHHHHhCCC
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF----------------------PVSDSSSSVIDCLLTEAKHRGV  177 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~----------------------p~~~~a~~~~~~l~~~~~~~Gv  177 (481)
                      ..+++.+..  ...+.++|+.++|+++....+|.++                      +.......++..|.+.+++.||
T Consensus        87 ~~lv~~l~~--~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi  164 (598)
T PRK09078         87 QDAIEYMCR--EAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNA  164 (598)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCC
Confidence            334433322  2346778999999987643333221                      1111345788899999999999


Q ss_pred             EEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610          178 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP  243 (481)
Q Consensus       178 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p  243 (481)
                      +|++++.+++|..++++...+|...+..++....+.|+.||+|||+              +|+|+.++.++|..+..+..
T Consensus       165 ~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me~  244 (598)
T PRK09078        165 EFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEF  244 (598)
T ss_pred             EEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCch
Confidence            9999999999987641235566653212233458999999999994              57889999999998865432


Q ss_pred             ceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc--
Q 011610          244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY--  316 (481)
Q Consensus       244 ~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~--  316 (481)
                        +++.... ...  .+.-+. ..++  ..+    ..++...|+.++..|+     +....+  +++.+..++.+...  
T Consensus       245 --~q~~pt~-~~~--~~~l~~-e~~r--g~G----~ilvN~~GeRF~~ey~~~~~el~~rd~--v~~ai~~e~~~~~g~~  310 (598)
T PRK09078        245 --VQFHPTG-IYG--AGCLIT-EGAR--GEG----GYLTNSEGERFMERYAPSAKDLASRDV--VSRAMTIEIREGRGVG  310 (598)
T ss_pred             --heecccc-cCC--CceEEe-eccc--CCc----eEEECCCCCCCchhcCccccccccchH--HHHHHHHHHHhcCCCC
Confidence              2222110 000  111100 0000  000    0122334554444332     111111  23333334333211  


Q ss_pred             --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHH
Q 011610          317 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARL  393 (481)
Q Consensus       317 --~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~  393 (481)
                        ...+.+|+ ..++.+.|.+.+..                       +.+ .+.. .|+|+.                 
T Consensus       311 ~~~~~v~ld~-~~~~~~~l~~~~~~-----------------------~~~-~~~~~~g~D~~-----------------  348 (598)
T PRK09078        311 KKKDHIFLHL-DHLDPEVLHERLPG-----------------------ISE-SAKIFAGVDVT-----------------  348 (598)
T ss_pred             CCCCEEEEEC-CCCCHHHHHHHHHH-----------------------HHH-HHHHHcCCCCC-----------------
Confidence              11344554 23445444333211                       001 1111 355532                 


Q ss_pred             hccCeEEEcccCCCceeEEecCCCCCCCCCccccc------ccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHH
Q 011610          394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIA  463 (481)
Q Consensus       394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~A  463 (481)
                        +-|++|...     +..|+|||.++. +.++..      .+.|||||+|||+.  -++|  +.||..|.+|+.+|++|
T Consensus       349 --~~pi~v~p~-----~h~t~GGi~vd~-~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~A  420 (598)
T PRK09078        349 --KEPIPVLPT-----VHYNMGGIPTNY-HGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAA  420 (598)
T ss_pred             --CCcEEeecc-----cEEcCCCcccCC-CceeecccccccCCccCceeecccccccCCcCcccccchhHHHHHHHHHHH
Confidence              124555443     678999998764 223321      25799999999986  4676  77999999999999999


Q ss_pred             HHHHhHHhh
Q 011610          464 GTSIGKLSN  472 (481)
Q Consensus       464 G~~aa~~~~  472 (481)
                      |++|++++.
T Consensus       421 g~~aa~~~~  429 (598)
T PRK09078        421 ALRAAEVIK  429 (598)
T ss_pred             HHHHHHhhh
Confidence            999988753

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.92  E-value=1.2e-22  Score=220.48  Aligned_cols=352  Identities=18%  Similarity=0.188  Sum_probs=198.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCc-eEEecCC-ceeeccC--CCcc-hhHHhhc------cCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSK-VKISGGG-RCNVTNG--HCAD-KMILAGH------YPR  117 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k-~~~sG~g-~~n~~~~--~~~~-~~~~~~~------~~~  117 (481)
                      ..+||+|||||.|||+||+.+++  .|++|+||||....+. ...+.+| ...+.+.  ...+ +...+..      +. 
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~-   80 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWG-   80 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCC-
Confidence            56899999999999999999999  7999999998755432 1122222 1111111  0111 1111111      11 


Q ss_pred             CChhchhhHHhcCChHHHHHHHHhcCCcceeecCC-------------------------e----------eeecCCChH
Q 011610          118 GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG-------------------------R----------VFPVSDSSS  162 (481)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-------------------------~----------~~p~~~~a~  162 (481)
                      .+....+.+. . ...+.++|+.++|+++.....+                         +          .|+.+....
T Consensus        81 ~D~~~vr~~v-~-~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~  158 (657)
T PRK08626         81 CDQEVARMFV-H-TAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGH  158 (657)
T ss_pred             CCHHHHHHHH-H-HHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHH
Confidence            1222322221 1 2246678999999887543211                         0          011122345


Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHH
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGH  228 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~  228 (481)
                      .+...|.+.+.+.||+|+.++.|++|..++ +...++.+.+..++.-..+.|+.||+|||+              +|+|.
T Consensus       159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~  237 (657)
T PRK08626        159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGA  237 (657)
T ss_pred             HHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHH
Confidence            677788888999999999999999999765 445566654312233356889999999994              57899


Q ss_pred             HHHHHcCC-CcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcc
Q 011610          229 RLAAQLGH-SIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILR  302 (481)
Q Consensus       229 ~la~~~G~-~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~  302 (481)
                      .+|.++|. .+..+.  .+++....  +.. .|.-+. ..++  ..+    ..+....|+.++.+|.     +....+  
T Consensus       238 ~mA~~aGaa~l~~mE--~vqfhPt~--~~~-~g~l~~-e~~r--g~G----~ilvn~~G~RF~~~y~p~~~Ela~rd~--  303 (657)
T PRK08626        238 AIALETGVAPLGNME--AVQFHPTA--IVP-SGILVT-EGCR--GDG----GLLRDKDGYRFMPDYEPEKKELASRDV--  303 (657)
T ss_pred             HHHHHcCCccccCcc--ceEEeccE--ECC-CCeEEE-eecc--CCC----EEEECCCCCCCCcccCcccccccchhH--
Confidence            99999996 554432  23332110  000 111110 0000  000    0122234444444332     111111  


Q ss_pred             cchhhHHHhHccCc-----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCC
Q 011610          303 LSAWGARYLFSSCY-----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGD  376 (481)
Q Consensus       303 lS~~~~~~~~~~~~-----~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~  376 (481)
                      +|+.+..++.+...     ...+.+|+-. +..+.+.+.                      +|  .+..+++. .|+|+.
T Consensus       304 vsrai~~~~~~g~g~~~~~~~~v~lD~~~-~~~~~i~~~----------------------~~--~i~e~~~~~~giD~~  358 (657)
T PRK08626        304 VSRRMTEHIRKGKGVKSPYGPHLWLDIRI-LGRKHIETN----------------------LR--EVQEICENFLGIDPA  358 (657)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCEEEEECCC-CCHHHHHHH----------------------Hh--HHHHHHHHHcCCCCc
Confidence            33434344433211     1235565421 222222111                      11  12334443 578765


Q ss_pred             CccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHH
Q 011610          377 TLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFN  452 (481)
Q Consensus       377 ~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGyn  452 (481)
                      +                   .+++|...     +..|+|||.+++-    .+...|||||+|||+.  .++|  +.||..
T Consensus       359 ~-------------------~~i~v~P~-----~hytmGGi~vd~~----~~t~~I~GLyAaGE~a~~g~hGanrlggns  410 (657)
T PRK08626        359 K-------------------DWIPVRPT-----QHYSMGGIRTNPT----GESYGLKGLFSAGEAACWDMHGFNRLGGNS  410 (657)
T ss_pred             C-------------------ceEEEEec-----ccEecCCceECCC----CCCcccCCEEecccccccCCCCCCccchHH
Confidence            2                   34555444     4579999998742    3333699999999986  5787  779999


Q ss_pred             HHHHHHHHHHHHHHHhHHhhH
Q 011610          453 FQNAWSGGYIAGTSIGKLSND  473 (481)
Q Consensus       453 l~~A~~sG~~AG~~aa~~~~~  473 (481)
                      |.+|+++|++||++||+++..
T Consensus       411 l~~~~v~G~iAg~~aa~~~~~  431 (657)
T PRK08626        411 LAETVVAGMIVGKYVADFCLG  431 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999988643

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.92  E-value=1.6e-22  Score=217.61  Aligned_cols=355  Identities=17%  Similarity=0.191  Sum_probs=200.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-C-ceEEecCCceeeccCCCcchhHHhh------ccCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-S-KVKISGGGRCNVTNGHCADKMILAG------HYPRGH  119 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~-k~~~sG~g~~n~~~~~~~~~~~~~~------~~~~~~  119 (481)
                      ..++||+|||+|.|||+||+.+++  .|.+|+||||.... . +....|+..|+..+....+......      .+. ..
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~-~d   86 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWL-GD   86 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCC-CC
Confidence            457899999999999999999999  78999999986443 2 3444455555554321111111110      111 12


Q ss_pred             hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeee--ec-------------------CCChHHHHHHHHHHHHhCCCE
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF--PV-------------------SDSSSSVIDCLLTEAKHRGVV  178 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~--p~-------------------~~~a~~~~~~l~~~~~~~Gv~  178 (481)
                      ..+++.+. . ...+.++|+.++|+++....+|.++  +.                   ......+++.|.+.+.+.|++
T Consensus        87 ~~~v~~~~-~-~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~  164 (591)
T PRK07057         87 QDAIEFMC-R-EAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQ  164 (591)
T ss_pred             HHHHHHHH-H-HHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCE
Confidence            23332221 1 2346778999999988764444332  11                   112356888898888899999


Q ss_pred             EEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCc
Q 011610          179 LQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPS  244 (481)
Q Consensus       179 i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~  244 (481)
                      ++.++.++++..++++...+|.+.+...+....+.|+.||+|||+              +|+++.++.++|..+..+.  
T Consensus       165 i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me--  242 (591)
T PRK07057        165 FFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDME--  242 (591)
T ss_pred             EEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCcc--
Confidence            999999999987531345567653212222357899999999995              4788999999999876543  


Q ss_pred             eeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcc------cchhhHHHhHccCc--
Q 011610          245 LFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILR------LSAWGARYLFSSCY--  316 (481)
Q Consensus       245 l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~------lS~~~~~~~~~~~~--  316 (481)
                      ++++.... . .. .+.-+. ..+.  ..+    ...+...|+-++.+|.   |....      +++.+..++.+...  
T Consensus       243 ~~q~~pt~-~-~~-~~~l~~-e~~r--g~g----~ilvn~~GeRF~~~~~---~~~~el~~rd~v~~ai~~e~~~g~g~~  309 (591)
T PRK07057        243 FWQFHPTG-V-AG-AGVLIT-EGVR--GEG----GILRNKDGERFMERYA---PTLKDLAPRDFVSRSMDQEIKEGRGCG  309 (591)
T ss_pred             cccccCCc-c-CC-CceEEe-eccc--CCc----eEEECCCCCCchhhcC---ccccccccHHHHHHHHHHHHHhcCCcC
Confidence            22221110 0 00 111000 0000  000    0122234444443332   11111      22222223322111  


Q ss_pred             --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhc-CCCCCCccccCCHHHHHHHHHH
Q 011610          317 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGRE-GLSGDTLWASVSNNSLISIARL  393 (481)
Q Consensus       317 --~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~  393 (481)
                        ...+.+|.-+ +..+.+.    .   .               +|.  +..+++.. ++++.                 
T Consensus       310 ~~~~~v~lD~~~-~~~~~~~----~---~---------------~~~--i~e~~~~~~~~d~~-----------------  347 (591)
T PRK07057        310 PNGDHVLLDLTH-LGAETIM----K---R---------------LPS--IREIALKFANVDCI-----------------  347 (591)
T ss_pred             CCCCEEEEeCCC-CCHHHHH----H---H---------------ccH--HHHHHHHhcCCCCC-----------------
Confidence              1245566532 1222111    0   0               110  12233322 34322                 


Q ss_pred             hccCeEEEcccCCCceeEEecCCCCCCCCCcccc-----cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHH
Q 011610          394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM-----ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAG  464 (481)
Q Consensus       394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~-----esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG  464 (481)
                        +-|+++...     +..|+|||.+++ +-.+.     +.+.|||||+|||+.  .++|  +.||..|.+|+++|++||
T Consensus       348 --~~pi~v~p~-----~h~t~GGi~vd~-~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag  419 (591)
T PRK07057        348 --KEPIPVVPT-----IHYQMGGIPTNI-HGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAG  419 (591)
T ss_pred             --CCCeeeehh-----HheeCCCeeECC-CCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHH
Confidence              223555443     568999999874 33443     345799999999986  4666  679999999999999999


Q ss_pred             HHHhHHhh
Q 011610          465 TSIGKLSN  472 (481)
Q Consensus       465 ~~aa~~~~  472 (481)
                      ++|++++.
T Consensus       420 ~~aa~~~~  427 (591)
T PRK07057        420 NHIVDHVK  427 (591)
T ss_pred             HHHHHHhh
Confidence            99998753

>PRK07121 hypothetical protein; Validated

Probab=99.92  E-value=4.3e-23  Score=218.47  Aligned_cols=377  Identities=18%  Similarity=0.174  Sum_probs=205.5

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeec-c------CC-CcchhHHhhcc-
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVT-N------GH-CADKMILAGHY-  115 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~-~------~~-~~~~~~~~~~~-  115 (481)
                      .++.++||+|||+|.+|++||++|++  .|.+|+||||.. .++....+|+.. ... .      .. ..+...+...+ 
T Consensus        16 ~~~~~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~~sgG~~-~~~~g~~~q~~~g~~d~~~~~~~~~~   92 (492)
T PRK07121         16 SWDDEADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATALSGGVI-YLGGGTAVQKAAGFEDSPENMYAYLR   92 (492)
T ss_pred             ccCCccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCeEE-EeCCCcHHHHhcCCCCCHHHHHHHHH
Confidence            34568999999999999999999999  799999999764 455444444321 110 0      00 01122222211 


Q ss_pred             ----CCCChhchhhHHhcCChHHHHHHHHhcCCcceeecCC-----------eeee---------------------c-C
Q 011610          116 ----PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG-----------RVFP---------------------V-S  158 (481)
Q Consensus       116 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-----------~~~p---------------------~-~  158 (481)
                          ...+..+++.+..  ...+.++|++++|+++......           ..|+                     . .
T Consensus        93 ~~~~~~~d~~l~~~~~~--~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  170 (492)
T PRK07121         93 VAVGPGVDEEKLRRYCE--GSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGP  170 (492)
T ss_pred             HHhCCCCCHHHHHHHHH--ccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCC
Confidence                1122333333322  2356789999999877532100           0000                     0 0


Q ss_pred             -C--ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEc-CeEEEccCC-----------
Q 011610          159 -D--SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEA-DYLLIASGS-----------  223 (481)
Q Consensus       159 -~--~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~a-d~VIlAtG~-----------  223 (481)
                       .  ....+.+.|.+.+++.|++|+++++|++|..++++...+|....  .+....+.| +.||+|||+           
T Consensus       171 ~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~~~  248 (492)
T PRK07121        171 GDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVARY  248 (492)
T ss_pred             CCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHHHh
Confidence             1  35678889999999999999999999999876413455676642  222357889 999999994           


Q ss_pred             ---------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCe
Q 011610          224 ---------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPM  288 (481)
Q Consensus       224 ---------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~  288 (481)
                                     +|+|+.|+.++|..+..+...........       +..+.. .+.+..            .|+.
T Consensus       249 ~p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~-------~~~~~~-~i~Vn~------------~G~R  308 (492)
T PRK07121        249 APAYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYP-------PSALLR-GILVNA------------RGQR  308 (492)
T ss_pred             CCcccCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccC-------CCCcCC-eEEECC------------CCCE
Confidence                           35678889999988755422111000000       001111 122222            2333


Q ss_pred             EEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHH
Q 011610          289 LVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYIL  368 (481)
Q Consensus       289 lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  368 (481)
                      +..+.. +...   ++..+.   ...+....+.+|-      ..++ ....    ............  .+....+++|+
T Consensus       309 F~nE~~-~~~~---~~~~~~---~~~~~~~~~i~D~------~~~~-~~~~----~~~~~~~~~~~~--~~kadtleeLA  368 (492)
T PRK07121        309 FVNEDT-YGAR---IGQFIL---EQPGGTAYLIVDE------ALFE-EARA----QLRPQIDGRTPG--AWKAETVEELA  368 (492)
T ss_pred             eecCCC-cHHH---HHHHHH---hccCCcEEEEEeH------HHHh-hhcc----ccccccccccCc--ccccCCHHHHH
Confidence            222110 0000   111111   1111222332221      1111 0000    000000000000  12234566777


Q ss_pred             HhcCCCCCCccccCCHHHHHHHHHH---------------hccCeEEEcccCC--CceeEEecCCCCCCCC-C-cccccc
Q 011610          369 GREGLSGDTLWASVSNNSLISIARL---------------LKHCTLEVAGKGQ--FKDEFVTAGGVPLSEI-S-LNTMES  429 (481)
Q Consensus       369 ~~~~~~~~~~~~~l~~~~~~~l~~~---------------l~~~~~~v~~~~~--~~~a~vt~GGv~~~ei-~-~~t~es  429 (481)
                      +.++++++...+.+  +++++++..               +.+-||+.....+  ......|.||+.+++- - ..+-+.
T Consensus       369 ~~~gid~~~l~~tv--~~yN~~~~~G~D~~f~r~~~~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~~g  446 (492)
T PRK07121        369 RKLGIPPGGLQATV--DAYNRAAAGGEDPPFHKQPEWLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRADG  446 (492)
T ss_pred             HHhCCCHHHHHHHH--HHHHHHhhcCCCcccCCCcccccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECCCC
Confidence            77777766544433  344444432               3344555544332  1136689999998854 2 223367


Q ss_pred             cCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          430 KIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       430 k~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      ++|||||+|||+. .+.|  +.+|.++.+|+++||+||++|++.+
T Consensus       447 ~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~~  491 (492)
T PRK07121        447 APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAARA  491 (492)
T ss_pred             CCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhhc
Confidence            8999999999985 4554  5689999999999999999998653

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.92  E-value=1.4e-22  Score=217.69  Aligned_cols=356  Identities=16%  Similarity=0.169  Sum_probs=197.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcc-hhHHhhc-----cCCCChh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCAD-KMILAGH-----YPRGHKE  121 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~-~~~~~~~-----~~~~~~~  121 (481)
                      .++||+|||+|.|||+||+.+++  .|.+|+||||..+. .....+++|-+........+ +..++..     ....++.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~   83 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQD   83 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence            46899999999999999999999  79999999987543 22223333322111111112 2122211     1112334


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecCCeeee---------------------cCCChHHHHHHHHHHHHhCCCEEE
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------------------VSDSSSSVIDCLLTEAKHRGVVLQ  180 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------------------~~~~a~~~~~~l~~~~~~~Gv~i~  180 (481)
                      +++.+..  ...+.++|+.++|+++....++.++.                     .......++..|.+.+.+.|++++
T Consensus        84 ~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~  161 (588)
T PRK08958         84 AIEYMCK--TGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF  161 (588)
T ss_pred             HHHHHHH--HHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEE
Confidence            4433322  23577899999999986533332211                     112356788899988888999999


Q ss_pred             cCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee
Q 011610          181 TGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF  246 (481)
Q Consensus       181 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~  246 (481)
                      +++.++++..++++...+|...+..++....+.|+.||+|||+              +|+++.++.++|..+..+..  +
T Consensus       162 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~--~  239 (588)
T PRK08958        162 SEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEM--W  239 (588)
T ss_pred             eCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcc--e
Confidence            9999999987531345566653212333457899999999994              57899999999999865543  3


Q ss_pred             EeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCce----
Q 011610          247 TFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCYK----  317 (481)
Q Consensus       247 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~~----  317 (481)
                      ++...  .... .+.-+. ..++  ..+    ..++...|+.++..|.     +....+  +++.+..++.+....    
T Consensus       240 q~~Pt--~~~~-~~~l~~-e~~r--g~g----~ilvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~~~g~~~~~  307 (588)
T PRK08958        240 QFHPT--GIAG-AGVLVT-EGCR--GEG----GYLLNKHGERFMERYAPNAKDLAGRDV--VARSIMIEIREGRGCDGPW  307 (588)
T ss_pred             EeecC--cccC-CceEEe-eccc--cCc----eEEECCCCCChhhhhCccccccCChhH--HHHHHHHHHHhcCCCcCCC
Confidence            32211  0000 111100 0000  000    0112234444443331     111111  223333333222110    


Q ss_pred             -eEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhc
Q 011610          318 -GMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLK  395 (481)
Q Consensus       318 -~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~  395 (481)
                       ..+.+|+ ..+..+.+.+.+       +         .  .      ...++. .++++.                   
T Consensus       308 ~~~v~ld~-~~l~~~~l~~~~-------~---------~--~------~~~~~~~~~~d~~-------------------  343 (588)
T PRK08958        308 GPHAKLKL-DHLGKEVLESRL-------P---------G--I------LELSRTFAHVDPV-------------------  343 (588)
T ss_pred             CCeEEEEc-ccCCHHHHHHHc-------c---------c--H------HHHHHHhcCCCcC-------------------
Confidence             1122332 122222222111       1         0  0      001111 123321                   


Q ss_pred             cCeEEEcccCCCceeEEecCCCCCCCCCccccc------ccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHH
Q 011610          396 HCTLEVAGKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGT  465 (481)
Q Consensus       396 ~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~  465 (481)
                      +-|++|...     +..|+|||.+++ +..+..      .+.|||||+|||+.  .++|  +.||..|.+|+++|++||+
T Consensus       344 ~~~i~v~p~-----~h~t~GGi~vd~-~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~  417 (588)
T PRK08958        344 KEPIPVIPT-----CHYMMGGIPTKV-TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGL  417 (588)
T ss_pred             CCcceeehh-----hcEeCCCeeECC-CceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHH
Confidence            123444433     678999998874 223321      26899999999986  4677  7899999999999999999


Q ss_pred             HHhHHhh
Q 011610          466 SIGKLSN  472 (481)
Q Consensus       466 ~aa~~~~  472 (481)
                      +|++++.
T Consensus       418 ~aa~~~~  424 (588)
T PRK08958        418 HLQESLA  424 (588)
T ss_pred             HHHHHhh
Confidence            9998763

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.92  E-value=2.3e-22  Score=209.04  Aligned_cols=342  Identities=15%  Similarity=0.139  Sum_probs=191.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCCcchhHHhhcc-----CCCChhc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKEF  122 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~~  122 (481)
                      .++||+|||+|.||++||+.++   .|.+|+||||... +.....+++|.+...+.  .+...+....     ...+..+
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~---~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~--d~~~~~~~d~~~~g~~~~d~~l   77 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR---KDLKILMVSKGKLNECNTYLAQGGISVARNK--DDITSFVEDTLKAGQYENNLEA   77 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc---cCCCEEEEecCCCCCCchHHHhHhheeCCCC--CCHHHHHHHHHHHhCCCCCHHH
Confidence            4689999999999999999985   4899999997644 33333344444432222  1222332221     1123334


Q ss_pred             hhhHHhcCChHHHHHHHHhcCCcceeecCC------------ee-eecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEE
Q 011610          123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDG------------RV-FPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTA  188 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g------------~~-~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i  188 (481)
                      ++.+..  ...+.++|+.++|+++......            +. ++.......+++.|.+.+++ .||+|+++++|++|
T Consensus        78 v~~~~~--~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~L  155 (433)
T PRK06175         78 VKILAN--ESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDI  155 (433)
T ss_pred             HHHHHH--HHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeee
Confidence            433322  2357789999999887543211            11 22233456788899888875 59999999999999


Q ss_pred             EecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee-EeeeCc-
Q 011610          189 SSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF-TFKIAD-  252 (481)
Q Consensus       189 ~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~-~~~~~~-  252 (481)
                      ..++ +..++|....  .++...+.|+.||+|||+              +|+++.++.++|+++..+..... |....+ 
T Consensus       156 i~~~-~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~~~~~~  232 (433)
T PRK06175        156 IEND-NTCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEE  232 (433)
T ss_pred             EecC-CEEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEeceEeccC
Confidence            8765 4455654332  122247899999999996              57889999999999865532111 110100 


Q ss_pred             cc-cc-cccCceecc-EEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCC
Q 011610          253 SQ-LT-ELSGVSFPK-VVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLH  329 (481)
Q Consensus       253 ~~-~~-~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~  329 (481)
                      .. .. -+-.-.++. ..+-+  +          ..|+.+....  ....  .+++.+.....+. ....+.+|.-. +.
T Consensus       233 ~~~~~~~l~~~~~~~~g~ilV--N----------~~G~RF~~E~--~~~~--~~~~ai~~~~~~~-~~~~v~~D~~~-~~  294 (433)
T PRK06175        233 TIEGKKFLISESVRGEGGKLL--N----------SKGERFVDEL--LPRD--VVTKAILEEMKKT-GSNYVYLDITF-LD  294 (433)
T ss_pred             CCCCcceEeehhhcCCceEEE--C----------CCCCChhhcc--ccHH--HHHHHHHHHHHhc-CCCeEEEeccc-Cc
Confidence            00 00 000000000 01112  1          1233322111  0111  1223222222221 12245566421 22


Q ss_pred             HHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCce
Q 011610          330 IEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKD  409 (481)
Q Consensus       330 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~  409 (481)
                      .+.+.    .+.                  |. ....+++ .|+|+..                   -++++...     
T Consensus       295 ~~~~~----~~~------------------~~-~yn~~~~-~G~D~~~-------------------~~i~v~p~-----  326 (433)
T PRK06175        295 KDFLK----NRF------------------PT-IYEECLK-RGIDITK-------------------DAIPVSPA-----  326 (433)
T ss_pred             HHHHH----HHH------------------HH-HHHHHHH-hCcCCCC-------------------CcEEEEcc-----
Confidence            22221    111                  11 1122222 4665432                   13444332     


Q ss_pred             eEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          410 EFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       410 a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      ...|.|||.+++-    .+ +++||||+|||+.  -++|  +.||.+|.+|+++|++||++|+...
T Consensus       327 ~h~t~GGi~vd~~----~~-t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~  387 (433)
T PRK06175        327 QHYFMGGIKVDLN----SK-TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI  387 (433)
T ss_pred             eeeecCCEEECCC----cc-ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence            4579999987642    22 7899999999986  4776  7799999999999999999998654

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.92  E-value=4.7e-22  Score=213.91  Aligned_cols=353  Identities=16%  Similarity=0.134  Sum_probs=197.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeecc-C-CCcchhHHhhcc-----CCCChh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTN-G-HCADKMILAGHY-----PRGHKE  121 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~-~-~~~~~~~~~~~~-----~~~~~~  121 (481)
                      .+||+|||+|.|||+||+.+++  .|++|+||||.... +....+++|-....+ . ...++..+....     ...+..
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~   80 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQP   80 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHH
Confidence            4699999999999999999999  79999999987554 333344333321111 1 111122222111     112333


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecCC---------eeeecC-----CChHHHHHHHHHHHHhCC----CEEEcCc
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDG---------RVFPVS-----DSSSSVIDCLLTEAKHRG----VVLQTGK  183 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g---------~~~p~~-----~~a~~~~~~l~~~~~~~G----v~i~~~~  183 (481)
                      +++.+...  ..+.++|+.++|+++....++         ..++..     .....++..|.+.+++.+    |+++.++
T Consensus        81 ~v~~~~~~--s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~  158 (589)
T PRK08641         81 PVKAMCEA--APGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGW  158 (589)
T ss_pred             HHHHHHHH--HHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeE
Confidence            44333222  246778999999988643322         222221     235677888887776543    8899999


Q ss_pred             eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEee
Q 011610          184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK  249 (481)
Q Consensus       184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~  249 (481)
                      .++++..++++...+|...+...+.-..+.|+.||+|||+              +|+|+.+|.++|..+..+.-  +++.
T Consensus       159 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef--~q~h  236 (589)
T PRK08641        159 EFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEF--IQIH  236 (589)
T ss_pred             EEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCcc--EEEe
Confidence            9999987531345677665312222346899999999995              57899999999998865542  3332


Q ss_pred             eCccccccccCc-eeccEEEEEEecCccCCCCcc-ceecCeE-EEe--c---c-ccchhhcccchhhHHHhHccC----c
Q 011610          250 IADSQLTELSGV-SFPKVVAKLKLENVQRSSPYL-TQVGPML-VTH--W---G-LSGPVILRLSAWGARYLFSSC----Y  316 (481)
Q Consensus       250 ~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~-~~~Ge~l-ft~--~---g-lsG~~il~lS~~~~~~~~~~~----~  316 (481)
                      ..-.. .  .+. .+-...++  ..|    ..+. ...|+-+ |-.  |   + +....+  +++.+..++.+.+    .
T Consensus       237 Pt~~~-~--~~~~~l~~e~~r--g~G----~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~--v~~ai~~~~~~~~~g~~g  305 (589)
T PRK08641        237 PTAIP-G--DDKLRLMSESAR--GEG----GRVWTYKDGKPWYFLEEKYPAYGNLVPRDI--ATREIFDVCVEQKLGING  305 (589)
T ss_pred             eeeec-C--CCcceEeeeeec--cCC----cEEEECCCCCCcccccccCCcccccCChhH--HHHHHHHHHHHhcCCCCC
Confidence            11000 0  110 00000000  000    0011 1223331 111  1   1 111111  2232323231211    1


Q ss_pred             eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610          317 KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH  396 (481)
Q Consensus       317 ~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~  396 (481)
                      ...+.+|+- ..+.++|.+.+..                       +++.+-+..|+|+.                   +
T Consensus       306 ~~~v~ld~~-~~~~e~l~~~~~~-----------------------~~~~~~~~~g~D~~-------------------~  342 (589)
T PRK08641        306 ENMVYLDLS-HKDPKELDIKLGG-----------------------ILEIYEKFTGDDPR-------------------K  342 (589)
T ss_pred             CceEEEEcC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCCC-------------------C
Confidence            123566653 3355555433321                       11111111366642                   2


Q ss_pred             CeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          397 CTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       397 ~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      .|++|...     +..|+|||.+++-     ..+.|||||+|||+. .++|  ++||..|..|+.+|++||++|++++.
T Consensus       343 ~~i~v~p~-----~h~~~GGi~vd~~-----~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~  411 (589)
T PRK08641        343 VPMKIFPA-----VHYSMGGLWVDYD-----QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK  411 (589)
T ss_pred             CceeeehH-----HheeCCCeEECCC-----CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence            24556544     4689999988743     357899999999986 5677  56999999999999999999998764

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.91  E-value=5.3e-22  Score=211.74  Aligned_cols=350  Identities=17%  Similarity=0.148  Sum_probs=201.8

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcchhHHhhcc-----CCCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHY-----PRGH  119 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~  119 (481)
                      .++.++||+|||+|.|||+||+.+++  .|.+|+||||.... .....+++|-..... ...++..+....     ...+
T Consensus        12 ~~~~~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g~s~~a~Ggi~a~~~-~~ds~e~~~~d~~~~g~g~~d   88 (541)
T PRK07804         12 GWRDAADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDGSTRWAQGGIAAVLD-PGDSPEAHVADTLVAGAGLCD   88 (541)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCCchhhhccceeeccC-CCCCHHHHHHHHHHhcCCCCC
Confidence            45678999999999999999999999  78999999987554 222233333221111 111122222111     1123


Q ss_pred             hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeee---------c------CCChHHHHHHHHHHHHhCCCEEEcCce
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------V------SDSSSSVIDCLLTEAKHRGVVLQTGKV  184 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------~------~~~a~~~~~~l~~~~~~~Gv~i~~~~~  184 (481)
                      ..+++.+..  ...+.++|+.++|+++....+|.+++         .      ......+.+.|.+.+++.||++++++.
T Consensus        89 ~~~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~  166 (541)
T PRK07804         89 PDAVRSLVA--EGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHAL  166 (541)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeE
Confidence            344433322  23467889999999887544333221         1      123567889999999999999999999


Q ss_pred             EEEEEecCCCCeEEEEEeec---ccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeE
Q 011610          185 VTTASSDNAGRKFLLKVEKR---TMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFT  247 (481)
Q Consensus       185 V~~i~~~~~~~~~~V~~~~~---~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~  247 (481)
                      |+++..++++...+|.+.+.   ..++...+.|+.||+|||+              +|+++.++.++|+.+..+.-  ++
T Consensus       167 v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~--~q  244 (541)
T PRK07804        167 ALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEF--VQ  244 (541)
T ss_pred             eeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcc--ee
Confidence            99998764123455655310   1111257899999999995              56789999999999865432  22


Q ss_pred             eeeC---cccc--c--cccCceeccEEEEEEecCccCCCCccceecCeEEEecc---ccchhhcccchhhHHHhHccCce
Q 011610          248 FKIA---DSQL--T--ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG---LSGPVILRLSAWGARYLFSSCYK  317 (481)
Q Consensus       248 ~~~~---~~~~--~--~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g---lsG~~il~lS~~~~~~~~~~~~~  317 (481)
                      +...   .+..  .  .+-.-.++.... ++          ++..|+.+..+|.   -..|-- .+++.+..++.+.+ .
T Consensus       245 ~~pt~~~~~~~~~~~~~l~~~~~r~~g~-~l----------vn~~G~RF~~~~~~~~E~a~rd-~v~~ai~~~~~~~g-~  311 (541)
T PRK07804        245 FHPTVLFLGPAAGGQRPLISEAVRGEGA-IL----------VDAQGNRFMAGVHPLADLAPRD-VVAKAIDRRMKATG-D  311 (541)
T ss_pred             EecceecCCcccccccceechhhcCCce-EE----------ECCCCCCCccccCcccccCcHH-HHHHHHHHHHHhcC-C
Confidence            2110   0000  0  000000100000 11          1223333322211   111110 13333333332212 2


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccC
Q 011610          318 GMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHC  397 (481)
Q Consensus       318 ~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~  397 (481)
                      ..+.+|.-+   .+    .+..   ..               |  .+..+++..|+|+.+                   .
T Consensus       312 ~~v~lD~~~---~~----~~~~---~~---------------p--~i~~~~~~~gid~~~-------------------~  345 (541)
T PRK07804        312 DHVYLDARG---IE----GFAR---RF---------------P--TITASCRAAGIDPVR-------------------Q  345 (541)
T ss_pred             CEEEEeCcc---HH----HHHH---Hh---------------h--HHHHHHHHhCcCCcC-------------------C
Confidence            246666532   11    1111   11               1  133456667888764                   1


Q ss_pred             eEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          398 TLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       398 ~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      +++|...     +..|+|||.+++-    ++ +.+||||+|||+.  -++|  +.||..+.+|..+|++||++|++++
T Consensus       346 ~i~v~p~-----~h~t~GGi~vd~~----~~-t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~  413 (541)
T PRK07804        346 PIPVAPA-----AHYSCGGVVTDVY----GR-TSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA  413 (541)
T ss_pred             eEEEEHH-----HhhcCCCEEECCC----Cc-ccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3555432     5679999987632    33 6899999999986  5676  6789999999999999999998775

>PLN02815 L-aspartate oxidase

Probab=99.91  E-value=7.7e-22  Score=211.33  Aligned_cols=354  Identities=15%  Similarity=0.107  Sum_probs=200.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcchhHHhhcc-----CCCChh
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKE  121 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~  121 (481)
                      ..++||+|||+|.|||+||+.+++  .| +|+||||.... .....+++|-+..... ..++..++...     ...++.
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~-~Ds~e~~~~d~~~~g~~~~d~~  102 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESNTNYAQGGVSAVLDP-SDSVESHMRDTIVAGAFLCDEE  102 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCcHHHhhcccccCCCC-CCCHHHHHHHHHHhccCCCcHH
Confidence            346899999999999999999999  67 89999987543 3233333332211111 11222222221     112334


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecCCee--------------eecCCChHHHHHHHHHHHHhC-CCEEEcCceEE
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVT  186 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~  186 (481)
                      +++.+..  ...+.++|+.++|+++....++.+              ++.......++..|.+.+++. |++|++++.++
T Consensus       103 lv~~~~~--~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~  180 (594)
T PLN02815        103 TVRVVCT--EGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAI  180 (594)
T ss_pred             HHHHHHH--HHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhh
Confidence            4433322  234678899999998864433221              111223567888898888765 89999999999


Q ss_pred             EEEecCCCC---eEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee-Ee
Q 011610          187 TASSDNAGR---KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF-TF  248 (481)
Q Consensus       187 ~i~~~~~~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~-~~  248 (481)
                      +|..+++++   ..+|...+..++....+.|+.||+|||+              +|+|+.|+.++|..+..+....+ |.
T Consensus       181 ~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefvQfhPt  260 (594)
T PLN02815        181 DLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQFHPT  260 (594)
T ss_pred             eeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCceeEEeee
Confidence            998753122   4566654312233357899999999994              57899999999999865542221 11


Q ss_pred             eeCccc--c-c---cccCceeccEEEEEEecCccCCCCccceecCeEEEeccc----cchhhcccchhhHHHhHccCcee
Q 011610          249 KIADSQ--L-T---ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGL----SGPVILRLSAWGARYLFSSCYKG  318 (481)
Q Consensus       249 ~~~~~~--~-~---~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~gl----sG~~il~lS~~~~~~~~~~~~~~  318 (481)
                      .+..+.  . .   .-.+.-+. ..++  ..+    ..+++..|+-+...|.-    ....+  +++.+..+..+.+ ..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~l~~-ea~r--g~G----~ilvN~~GeRF~~~y~~~~ela~rd~--va~ai~~e~~~~~-~~  330 (594)
T PLN02815        261 ALADEGLPIKPAKARENAFLIT-EAVR--GDG----GILYNLAGERFMPLYDERAELAPRDV--VARSIDDQLKKRN-EK  330 (594)
T ss_pred             eecCCCccccccccccccceee-hhhc--cCC----cEEECCCCCCCccccCcccccCChHH--HHHHHHHHHHhcC-CC
Confidence            111100  0 0   00001000 0000  000    11223345554444431    11111  3333333332221 22


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCe
Q 011610          319 MLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCT  398 (481)
Q Consensus       319 ~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~  398 (481)
                      .+.+|.-. +..+++.+.       .               | .+. ..+...|+|+.+                   -|
T Consensus       331 ~v~lD~~~-~~~~~~~~~-------~---------------p-~i~-~~~~~~GiD~~k-------------------~p  366 (594)
T PLN02815        331 YVLLDISH-KPREEILSH-------F---------------P-NIA-AECLKRGLDITK-------------------QP  366 (594)
T ss_pred             EEEEeCCC-CCHHHHHHH-------C---------------H-HHH-HHHHHhCcCCCC-------------------Cc
Confidence            45666532 223222111       1               1 111 223345776532                   23


Q ss_pred             EEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          399 LEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       399 ~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      ++|...     +..|+|||.+|+-    . .+.|||||+|||+.  .++|  +.||..|..|..+|++||++|++++
T Consensus       367 i~v~P~-----~hyt~GGi~vD~~----~-~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~  433 (594)
T PLN02815        367 IPVVPA-----AHYMCGGVRTGLQ----G-ETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM  433 (594)
T ss_pred             eeeech-----hcEeCCCeeECCC----C-ceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence            555444     5689999988632    2 25899999999986  5777  7799999999999999999998764

>TIGR00551 nadB L-aspartate oxidase

Probab=99.91  E-value=3.4e-22  Score=211.14  Aligned_cols=342  Identities=18%  Similarity=0.201  Sum_probs=196.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCce-EEecCCceeeccCCCcchhHHhhcc-----CCCChhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKV-KISGGGRCNVTNGHCADKMILAGHY-----PRGHKEF  122 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~-~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~~  122 (481)
                      ++||+|||+|+|||+||+.+++  .|. |+||||... +... ...|+..+......  +++.+....     ...++.+
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~d--s~e~~~~d~~~~~~~~~d~~~   76 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETD--SIDSHVEDTLAAGAGICDREA   76 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCCCcchhcCcCeeeeecCCC--CHHHHHHHHHHhcCCcCCHHH
Confidence            4799999999999999999998  676 999997743 3322 23333223222211  111222111     1123344


Q ss_pred             hhhHHhcCChHHHHHHHHhcCCcceeecCC-------------eeeec-CCChHHHHHHHHHHHHh-CCCEEEcCceEEE
Q 011610          123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDG-------------RVFPV-SDSSSSVIDCLLTEAKH-RGVVLQTGKVVTT  187 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-------------~~~p~-~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~  187 (481)
                      ++.+..  ...+.++|++++|+++.....+             +.++. ......+.+.|.+.+++ .|++|++++.|++
T Consensus        77 v~~~~~--~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~  154 (488)
T TIGR00551        77 VEFVVS--DARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALD  154 (488)
T ss_pred             HHHHHH--hHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeee
Confidence            433322  3457889999999988643322             22221 22456788999999987 6999999999999


Q ss_pred             EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeC--
Q 011610          188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIA--  251 (481)
Q Consensus       188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~--  251 (481)
                      |..++ +...+|.+.+  .++...+.|+.||+|||+              +|+|+.++.++|..+..+..  +++...  
T Consensus       155 l~~~~-g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~--~q~~pt~~  229 (488)
T TIGR00551       155 LLIET-GRVVGVWVWN--RETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEF--NQFHPTAL  229 (488)
T ss_pred             eeccC-CEEEEEEEEE--CCcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcc--eEEEeeEe
Confidence            98764 3445566653  122357899999999995              46789999999999765432  222110  


Q ss_pred             -cccc-ccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccch-hhc-ccchhhHHHhHccCceeEEEEecCCC
Q 011610          252 -DSQL-TELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGP-VIL-RLSAWGARYLFSSCYKGMLTVDFVPD  327 (481)
Q Consensus       252 -~~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~-~il-~lS~~~~~~~~~~~~~~~~~~d~~p~  327 (481)
                       .+.. ..+-.-.++.... +          ++...|+.++.+|.-.+. +.. -+++.+..++.+.+.+ .+.+|.-+ 
T Consensus       230 ~~~~~~~~l~~~~~~g~g~-~----------lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~~~~-~v~ld~~~-  296 (488)
T TIGR00551       230 YKPRARYFLITEAVRGEGA-Y----------LVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGAD-CVFLDASG-  296 (488)
T ss_pred             cCCCCcceeeehhhcCCce-E----------EECCCCCChhhccCcccccCchHHHHHHHHHHHHhcCCC-eEEecCcc-
Confidence             0000 0000000000000 1          122234443332211010 000 1233333343332221 24454421 


Q ss_pred             CCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCC
Q 011610          328 LHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQF  407 (481)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~  407 (481)
                           +.+ +..   ..               |  .+..+++..|+|+.+                   -|++|...   
T Consensus       297 -----~~~-~~~---~~---------------~--~~~~~~~~~G~D~~~-------------------~~i~v~p~---  328 (488)
T TIGR00551       297 -----IEA-FRQ---RF---------------P--TIYAKCLGAGIDPTR-------------------EPIPVVPA---  328 (488)
T ss_pred             -----hHH-HHH---Hc---------------c--hHHHHHHHhCCCCCC-------------------Cceecccc---
Confidence                 111 111   11               1  134455567888753                   13445443   


Q ss_pred             ceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          408 KDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       408 ~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                        +..|.|||.+++-    .+ +.|||||+|||+.  .++|  +.||..|.+|..+|++||++|++++
T Consensus       329 --~h~t~GGi~vd~~----~~-t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~  389 (488)
T TIGR00551       329 --AHYTCGGISVDDH----GR-TTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP  389 (488)
T ss_pred             --cEEecCCEEECCC----Cc-ccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence              5789999998742    22 5899999999986  5777  6789999999999999999998764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.91  E-value=7.7e-22  Score=212.49  Aligned_cols=359  Identities=14%  Similarity=0.103  Sum_probs=194.0

Q ss_pred             EEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCC--ceEEecC--CceeeccCCCcchhHHhhccC-----CCChhc
Q 011610           53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLS--KVKISGG--GRCNVTNGHCADKMILAGHYP-----RGHKEF  122 (481)
Q Consensus        53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~--k~~~sG~--g~~n~~~~~~~~~~~~~~~~~-----~~~~~~  122 (481)
                      |+|||+|+|||+||+.+++  .|.+|+||||.. +++  +..+.|+  +.|+..+.. .++..+.....     ..+..+
T Consensus         1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~-ds~e~~~~d~~~~g~~~~d~~l   77 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDG-DSPWRHFDDTVKGGDFRARESP   77 (603)
T ss_pred             CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCC-CCHHHHHHHHHHhcCCCCCHHH
Confidence            7999999999999999999  799999999875 543  3444443  345433221 12222222111     112333


Q ss_pred             hhhHHhcCChHHHHHHHHhcCCcceeecCCee---------ee-----cCCChHHHHHHHHHHHHh----CCCEEEcCce
Q 011610          123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FP-----VSDSSSSVIDCLLTEAKH----RGVVLQTGKV  184 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p-----~~~~a~~~~~~l~~~~~~----~Gv~i~~~~~  184 (481)
                      ++.+. .. ..+.++|+.++|+++....++.+         ++     .......++..|.+.+++    .||++++++.
T Consensus        78 v~~l~-~~-s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~  155 (603)
T TIGR01811        78 VKRLA-VA-SPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWE  155 (603)
T ss_pred             HHHHH-HH-HHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcE
Confidence            33322 21 34788999999998865433321         11     112456677777666544    3899999999


Q ss_pred             EEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeee
Q 011610          185 VTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI  250 (481)
Q Consensus       185 V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~  250 (481)
                      |++|..++++..++|.+.+..++....+.|+.||+|||+              +|+|+.+|.++|+.+..+.-  +++..
T Consensus       156 v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~--vq~~P  233 (603)
T TIGR01811       156 MLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEF--IQIHP  233 (603)
T ss_pred             EEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcc--eEEEe
Confidence            999987541245677665311222357899999999996              58899999999998654432  22211


Q ss_pred             Cccccc-c--ccCceeccEEE----EEEecCccCCCCccce--ecCe--EEE-ec---cccch-hhcccchhhHHHhHcc
Q 011610          251 ADSQLT-E--LSGVSFPKVVA----KLKLENVQRSSPYLTQ--VGPM--LVT-HW---GLSGP-VILRLSAWGARYLFSS  314 (481)
Q Consensus       251 ~~~~~~-~--l~G~~~~~~~~----~~~~~~~~~~~~~~~~--~Ge~--lft-~~---glsG~-~il~lS~~~~~~~~~~  314 (481)
                      .--... .  ..+.-+. ..+    .++++...........  .|+-  ... .|   +-.-| -+  +|+.+..++.+.
T Consensus       234 t~~~~~g~~~~~~~li~-ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~--vs~ai~~~~~~g  310 (603)
T TIGR01811       234 TAIPVDGTWQSKLRLMS-ESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDI--ASRAIFQVCDAG  310 (603)
T ss_pred             eeecCCCcccccceEee-eeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHH--HHHHHHHHHHhc
Confidence            000000 0  0000000 000    0111100000000111  2332  111 11   11011 11  334444444432


Q ss_pred             C----ceeEEEEecCCCCCHHHHH-HHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHH
Q 011610          315 C----YKGMLTVDFVPDLHIEDMQ-SILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLIS  389 (481)
Q Consensus       315 ~----~~~~~~~d~~p~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  389 (481)
                      +    ....+++|+-+- .. ++. +++..                  .+| .+.+.+.+..|+|+.             
T Consensus       311 ~g~~~~~~~v~ld~~~~-~~-~~~~~~~~~------------------~~~-~~~~~~~~~~g~d~~-------------  356 (603)
T TIGR01811       311 KGVGPGENAVYLDFSDA-DE-RLGRKEIDA------------------KYG-NLFEMYEKFTGDDPY-------------  356 (603)
T ss_pred             CCcCCCCCeEEEEcCCC-cc-cccHHHHHH------------------HhH-HHHHHHHHhcCCCcc-------------
Confidence            1    112355555321 11 110 11111                  111 112222222466643             


Q ss_pred             HHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHH
Q 011610          390 IARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTS  466 (481)
Q Consensus       390 l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~  466 (481)
                            +-|++|...     +..++|||.+|+-.     .+.+||||+|||+. .++|  +.||..|.-|+.+|++||++
T Consensus       357 ------~~~i~v~p~-----~H~~~gG~~~d~~~-----~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~  420 (603)
T TIGR01811       357 ------KVPMRIFPA-----VHYTMGGLWVDYDQ-----MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPF  420 (603)
T ss_pred             ------CCeeeeecc-----cceeCCCeeECCCC-----cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHH
Confidence                  235566555     56899999986422     36799999999975 4666  56999999999999999999


Q ss_pred             HhHHh
Q 011610          467 IGKLS  471 (481)
Q Consensus       467 aa~~~  471 (481)
                      |++++
T Consensus       421 aa~~~  425 (603)
T TIGR01811       421 TIPNY  425 (603)
T ss_pred             HHHHH
Confidence            99875

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.91  E-value=1.5e-21  Score=210.13  Aligned_cols=353  Identities=17%  Similarity=0.207  Sum_probs=194.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCc-eEEecCCceeeccCCCcc-hhHHh------hccCCCCh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSK-VKISGGGRCNVTNGHCAD-KMILA------GHYPRGHK  120 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k-~~~sG~g~~n~~~~~~~~-~~~~~------~~~~~~~~  120 (481)
                      .++||+|||+|.|||+||++|++  . .+|+|+||..+++. ...+++|-+-.......+ .....      ..+. .+.
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~-~d~   79 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYL-VDQ   79 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCC-CCH
Confidence            46899999999999999999997  4 89999998765432 222333322111100111 11111      1111 233


Q ss_pred             hchhhHHhcCChHHHHHHHHhcCCcceeecCCee---------------------eecCCChHHHHHHHHHHHHhCCCEE
Q 011610          121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------------------FPVSDSSSSVIDCLLTEAKHRGVVL  179 (481)
Q Consensus       121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------------------~p~~~~a~~~~~~l~~~~~~~Gv~i  179 (481)
                      .+++.+..  ...+.++|+.++|+++....++.+                     +........+++.|.+.+++.||++
T Consensus        80 ~~v~~~~~--~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i  157 (583)
T PRK08205         80 DAAEIMAK--EAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEF  157 (583)
T ss_pred             HHHHHHHH--HHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEE
Confidence            33333222  134668899999998864333221                     1111235678899999999999999


Q ss_pred             EcCceEEEEEecCC---CCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCC
Q 011610          180 QTGKVVTTASSDNA---GRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPV  242 (481)
Q Consensus       180 ~~~~~V~~i~~~~~---~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~  242 (481)
                      ++++.|++|..+++   +...+|...+..++....+.|+.||+|||+              +|+|+.+|.++|.++..+.
T Consensus       158 ~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me  237 (583)
T PRK08205        158 FNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDME  237 (583)
T ss_pred             EeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCcc
Confidence            99999999986531   244566553212222347899999999994              5778999999999986553


Q ss_pred             CceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcc------cchhhHHHhHccCc
Q 011610          243 PSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILR------LSAWGARYLFSSCY  316 (481)
Q Consensus       243 p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~------lS~~~~~~~~~~~~  316 (481)
                      .  +++...  .... .+.-+. ..++  ..+    ...+...|+.+..+|.   |...+      +++.+..++.+...
T Consensus       238 ~--~q~~Pt--~~~~-~~~l~~-e~~r--g~g----~ilvn~~GeRF~~~y~---~~~~el~~rd~v~~ai~~e~~~~~g  302 (583)
T PRK08205        238 F--HQFHPT--GLAG-LGILIS-EAAR--GEG----GILRNAEGERFMERYA---PTIKDLAPRDIVARSMVLEVREGRG  302 (583)
T ss_pred             c--eEEecc--eecC-CceEee-eccc--CCc----eEEECCCCCCCccccC---ccccccccHHHHHHHHHHHHHhcCC
Confidence            2  222210  0000 111110 0000  000    0112233444433332   11111      22222233322111


Q ss_pred             ----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHH
Q 011610          317 ----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIA  391 (481)
Q Consensus       317 ----~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~  391 (481)
                          ...+.+|+. .++.+.+.+.+..                        +..+++. .++++.               
T Consensus       303 ~~~~~~~v~ld~~-~~~~~~l~~~~~~------------------------~~~~~~~~~g~d~~---------------  342 (583)
T PRK08205        303 AGPNKDYVYLDLT-HLGEEVLEAKLPD------------------------ITEFARTYLGVDPV---------------  342 (583)
T ss_pred             CCCCCCEEEEecc-cCChHHHHHHcch------------------------HHHHHHHHcCCCcC---------------
Confidence                112444442 2233322221110                        0011111 344332               


Q ss_pred             HHhccCeEEEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHH
Q 011610          392 RLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGT  465 (481)
Q Consensus       392 ~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~  465 (481)
                          .-++++...     +..|.|||.++.- ..++  ..+.|||||+|||+.  .++|  +.||..|.+|+++|++||+
T Consensus       343 ----~~~i~v~p~-----~h~t~GGi~id~~-~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~  412 (583)
T PRK08205        343 ----KEPVPVYPT-----AHYAMGGIPTTVD-GEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGI  412 (583)
T ss_pred             ----CCceEEEee-----eeEECCCeeECCC-ceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHH
Confidence                113444433     5689999987742 2222  347899999999986  4777  7799999999999999999


Q ss_pred             HHhHHhh
Q 011610          466 SIGKLSN  472 (481)
Q Consensus       466 ~aa~~~~  472 (481)
                      +||++++
T Consensus       413 ~aa~~~~  419 (583)
T PRK08205        413 AAAEYAR  419 (583)
T ss_pred             HHHHHhh
Confidence            9998764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.90  E-value=2.7e-21  Score=209.49  Aligned_cols=187  Identities=18%  Similarity=0.151  Sum_probs=120.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCC--ceEEecCCc--eeeccCCCcchhHHhhccC-----CC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS--KVKISGGGR--CNVTNGHCADKMILAGHYP-----RG  118 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~--k~~~sG~g~--~n~~~~~~~~~~~~~~~~~-----~~  118 (481)
                      .++||+|||+|.|||+||+.|++  .|.+|+|||+. .+++  +..+.|+..  ++..+.. .++..++....     ..
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~-Ds~~~~~~d~~~~g~~~~  110 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDG-DSVYRLFYDTVKGGDFRA  110 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhchHhHhhccccC-CCHHHHHHHHHHhcCCCC
Confidence            56899999999999999999999  79999999964 5442  333333322  2221111 12222222111     11


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeec--------------CCChHHHH----HHHHHHHHhCCCEEE
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV--------------SDSSSSVI----DCLLTEAKHRGVVLQ  180 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~--------------~~~a~~~~----~~l~~~~~~~Gv~i~  180 (481)
                      +..+++.+. .. ..+.++|+.++|+++.....+.+++.              ......++    +.|.+.+++.||+|+
T Consensus       111 d~~lv~~l~-~~-s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~  188 (640)
T PRK07573        111 REANVYRLA-EV-SVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMY  188 (640)
T ss_pred             CHHHHHHHH-HH-HHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEE
Confidence            233333332 22 24788999999999865433322211              11223343    556667888999999


Q ss_pred             cCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccC
Q 011610          181 TGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDP  241 (481)
Q Consensus       181 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~  241 (481)
                      +++.|++|..++ +...+|.+.+..++....+.|+.||+|||+              +|+|+.+|.++|..+..+
T Consensus       189 ~~t~v~~Li~d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tt~~~~~tGdGi~mA~~aGA~l~~m  262 (640)
T PRK07573        189 TRTEMLDLVVVD-GRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFANP  262 (640)
T ss_pred             eceEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCCCCCCCcCcHHHHHHHHcCCCccCc
Confidence            999999998765 455677665311222357899999999995              478899999999998654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.90  E-value=1.2e-22  Score=211.61  Aligned_cols=366  Identities=16%  Similarity=0.163  Sum_probs=197.6

Q ss_pred             EECCchHHHHHHHHHhccCCCCcEEEEeCCCC---CCceEEecCCceeeccCC-----CcchhHHhhccC-----CCChh
Q 011610           55 VVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP---LSKVKISGGGRCNVTNGH-----CADKMILAGHYP-----RGHKE  121 (481)
Q Consensus        55 IIGgG~aGl~aA~~la~~~~g~~V~llE~~~~---g~k~~~sG~g~~n~~~~~-----~~~~~~~~~~~~-----~~~~~  121 (481)
                      |||+|.+|++||++|++  .|.+|+||||...   |.....+++.++......     ..+...+...+.     ..+..
T Consensus         1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNES   78 (432)
T ss_pred             CCcccHHHHHHHHHHHh--CCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHH
Confidence            79999999999999999  7999999998643   322222222121110000     001111111111     11223


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecCC-------eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-C
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDG-------RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-A  193 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-------~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~  193 (481)
                      +.+.+..  ...+.++|++++|+++.....+       ..||. .....+++.|.+.+++.|++|+++++|++|..++ +
T Consensus        79 l~~~~~~--~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~-~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~  155 (432)
T TIGR02485        79 LSRLGIG--RGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLR-GGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFD  155 (432)
T ss_pred             HHHHHHh--cchhHHHHHHhCCceeeecCCCCccccCceeeec-CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCC
Confidence            3333221  2357789999999987653322       23332 3456789999999999999999999999998752 1


Q ss_pred             CCeEEEEEeecccCceEEEEcCeEEEccCC---------------------------ChhHHHHHHHcCCCcccCCCcee
Q 011610          194 GRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAAQLGHSIVDPVPSLF  246 (481)
Q Consensus       194 ~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~g~g~~la~~~G~~i~~~~p~l~  246 (481)
                      +..++|.+..    ....+.|+.||+|||+                           +|++.+|+..+|..+........
T Consensus       156 g~v~gv~~~~----~~~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~Ga~~~~~~~~~~  231 (432)
T TIGR02485       156 GAHDGPLTTV----GTHRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEGAQAIGDPTDGH  231 (432)
T ss_pred             CeEEEEEEcC----CcEEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcCccccCCCCcce
Confidence            2334555432    1357999999999994                           34566677777766532111101


Q ss_pred             EeeeCccccccc-cCce-----eccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhH-ccCceeE
Q 011610          247 TFKIADSQLTEL-SGVS-----FPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLF-SSCYKGM  319 (481)
Q Consensus       247 ~~~~~~~~~~~l-~G~~-----~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~-~~~~~~~  319 (481)
                      +.... +..... .+..     .+. .+-+..+|    +++..+.......++...+           ..+. ..+....
T Consensus       232 ~~~~~-~~~~~~~~~~~~~~~~~~~-~i~vn~~G----~RF~~E~~~~~~~~~~~~~-----------~~~~~~~~~~~~  294 (432)
T TIGR02485       232 VVAVD-ARAPFHDGGIVTRIDGMQL-GIVVGRDG----RRFADEGAIRGPERYAVWG-----------RQLASRPGQRAY  294 (432)
T ss_pred             eEeec-CCCCcCCCceeeeeccccc-EEEECCCC----CEeeecCCccccchHHHHH-----------HHHHhCCCCeEE
Confidence            11011 000000 0110     010 11121111    2222221111101111111           1111 1112222


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH----hc
Q 011610          320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL----LK  395 (481)
Q Consensus       320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----l~  395 (481)
                      +..|-      ...+.        .+....     .  .+-.+.+++|++++|+|++...+.+  +.+++++..    +.
T Consensus       295 ~i~D~------~~~~~--------~~~~~~-----~--~~~adtleeLA~~~gid~~~l~~tv--~~yN~~~~~g~~~i~  351 (432)
T TIGR02485       295 ILLDA------DAAKR--------LPPMAC-----P--PLSADTLEELAGLLGIDPGGLAETL--DRPNAAPRTGARMIL  351 (432)
T ss_pred             EEecc------hhhhh--------cccccC-----C--ceecCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCCCCCC
Confidence            32221      10100        000000     0  1223457788888898877655444  556666532    34


Q ss_pred             cCeEEEcccCCCceeEEecCCCCCCCCC-cccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011610          396 HCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       396 ~~~~~v~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~  470 (481)
                      +-||+.....+-  ...|.||+.+++-- ....+.++|||||+|||+.  .++|  +.||.++.+|+++||+||++||+.
T Consensus       352 ~~PfYa~~~~p~--~~~T~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~  429 (432)
T TIGR02485       352 VVPFHAYPMIPG--ITFTRYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL  429 (432)
T ss_pred             CCCeEEEEeecc--cceeccceEECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence            556666554332  46799999998622 2334688999999999975  4655  668999999999999999999876


Q ss_pred             h
Q 011610          471 S  471 (481)
Q Consensus       471 ~  471 (481)
                      +
T Consensus       430 ~  430 (432)
T TIGR02485       430 A  430 (432)
T ss_pred             h
Confidence            4

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.90  E-value=1.1e-21  Score=208.02  Aligned_cols=345  Identities=16%  Similarity=0.145  Sum_probs=197.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC--CCceEEecCCceeeccCCCcchhHHhhcc-----CCCChh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP--LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKE  121 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~--g~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~  121 (481)
                      .++||+|||+|.|||+||+.++.    .+|+||||...  ++....++++-+..... ..++..+...+     ...+..
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~-~ds~e~~~~d~~~~~~g~~d~~   82 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPLGEGASSAWAQGGIAAALGP-DDSPALHAADTLAAGAGLCDPA   82 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCCCCCcchHHhhhccccccCC-CCCHHHHHHHHHHhhCCCCCHH
Confidence            46899999999999999999974    59999998765  32233333333211111 11222222111     112334


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecCCeeee---------------cCCChHHHHHHHHHHHHhC-CCEEEcCceE
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------------VSDSSSSVIDCLLTEAKHR-GVVLQTGKVV  185 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------------~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V  185 (481)
                      +++.+..  ...+.++|+.++|+++.....+.++.               .......+++.|.+.+++. ||+++.++.|
T Consensus        83 ~v~~~~~--~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v  160 (513)
T PRK07512         83 VAALITA--EAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEA  160 (513)
T ss_pred             HHHHHHH--HHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcCh
Confidence            4433322  23577899999999886544433221               0123567889999888775 8999999999


Q ss_pred             EEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee-Eeee
Q 011610          186 TTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF-TFKI  250 (481)
Q Consensus       186 ~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~-~~~~  250 (481)
                      ++|..++ +..++|.+.+  .++...+.|+.||+|||+              +|+|+.++.++|+.+..+.-..+ |...
T Consensus       161 ~~Li~~~-g~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~Pt~~  237 (513)
T PRK07512        161 RRLLVDD-GAVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAI  237 (513)
T ss_pred             hheeecC-CEEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEEEeeee
Confidence            9997654 4455666542  111246899999999996              47899999999999876543221 1111


Q ss_pred             Ccccc-ccccCceeccEEEEEEecCccCCCCccceecCeEEEecc----ccchhhcccchhhHHHhHccCceeEEEEecC
Q 011610          251 ADSQL-TELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCYKGMLTVDFV  325 (481)
Q Consensus       251 ~~~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g----lsG~~il~lS~~~~~~~~~~~~~~~~~~d~~  325 (481)
                      ..+.. ..+-...++... .+          .+...|+.++.+|.    +....+  +++.+..+..+ +.  .+.+|.-
T Consensus       238 ~~~~~~~~l~~~~~rg~g-~~----------lvn~~G~RF~~~~~~~~e~~~rd~--v~~ai~~~~~~-g~--~v~ld~~  301 (513)
T PRK07512        238 DIGRDPAPLATEALRGEG-AI----------LINEDGERFMADIHPGAELAPRDV--VARAVFAEIAA-GR--GAFLDAR  301 (513)
T ss_pred             cCCCCCcceeehhhhCCc-eE----------EECCCCCChhhhcCCccccCcHHH--HHHHHHHHHhc-CC--EEEEecc
Confidence            10000 000000010000 01          11223444332221    111111  23333333322 22  2345543


Q ss_pred             CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccC
Q 011610          326 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKG  405 (481)
Q Consensus       326 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~  405 (481)
                      . ...+.+    ..   .               .|  .+..+++..|+|+.+.                   +++|... 
T Consensus       302 ~-~~~~~~----~~---~---------------~~--~i~~l~~~~gid~~~~-------------------~i~v~p~-  336 (513)
T PRK07512        302 A-ALGAHF----AT---R---------------FP--TVYAACRSAGIDPARQ-------------------PIPVAPA-  336 (513)
T ss_pred             c-cchHHH----HH---H---------------hh--HHHHHHHHhCcCCCCC-------------------ceEEecc-
Confidence            2 111111    00   1               11  2345666688887641                   2444333 


Q ss_pred             CCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610          406 QFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSND  473 (481)
Q Consensus       406 ~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~~  473 (481)
                          +..|.|||.+++-    .+ ++|||||+|||+.  .++|  +.||..|.+|..+|++||++|++++.+
T Consensus       337 ----~h~t~GGi~vd~~----~~-t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~~  399 (513)
T PRK07512        337 ----AHYHMGGIAVDAD----GR-SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPAA  399 (513)
T ss_pred             ----cCEEcCCEEECCC----Cc-cccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                5689999988642    22 6899999999986  4666  669999999999999999999887543

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.90  E-value=3.7e-21  Score=205.24  Aligned_cols=348  Identities=16%  Similarity=0.138  Sum_probs=197.1

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcchhHHhhcc-----CCCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHY-----PRGH  119 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~  119 (481)
                      ..+.++||+|||+|.||++||+.+++   |.+|+||||.... .....+++|-...... ..++..++...     ...+
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~~---G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~-~ds~e~~~~d~~~~g~~~~d   80 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLPS---HLRVGLITKDTLKTSASDWAQGGIAAAIAP-DDSPKLHYEDTLKAGAGLCD   80 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhhc---CCCEEEEEccCCCCCchhhhcccceecccC-CCCHHHHHHHHHHhcCCCCC
Confidence            45567999999999999999999964   7899999987543 3222333332211111 11122222111     1123


Q ss_pred             hhchhhHHhcCChHHHHHHHHhcCCcceeecC--------C----eee-ecCCChHHHHHHHHHHHHh-CCCEEEcCceE
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDD--------G----RVF-PVSDSSSSVIDCLLTEAKH-RGVVLQTGKVV  185 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~--------g----~~~-p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V  185 (481)
                      ..+++.+...  ..+.++|+.++|+++.....        +    +.+ +.......+++.|.+.+++ .|++|++++.|
T Consensus        81 ~~lv~~~~~~--s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v  158 (553)
T PRK07395         81 PEAVRFLVEQ--APEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALA  158 (553)
T ss_pred             HHHHHHHHHH--HHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcCh
Confidence            4444443322  35778899999998864321        1    111 1122456788899888875 49999999999


Q ss_pred             EEEEecCC-CCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeee
Q 011610          186 TTASSDNA-GRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI  250 (481)
Q Consensus       186 ~~i~~~~~-~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~  250 (481)
                      ++|..+++ +...+|.+..  ++....+.|+.||+|||+              +|+++.++.++|+.+..+..  +++..
T Consensus       159 ~~Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~--~q~hp  234 (553)
T PRK07395        159 LSLWLEPETGRCQGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEF--FQFHP  234 (553)
T ss_pred             hhheecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcc--eeEEe
Confidence            99987531 2345665542  222345899999999996              47889999999999866542  22221


Q ss_pred             C---ccccc-cccCceeccEEEEEEecCccCCCCccceecCeEEEecc----ccchhhcccchhhHHHhHccCc---eeE
Q 011610          251 A---DSQLT-ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCY---KGM  319 (481)
Q Consensus       251 ~---~~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g----lsG~~il~lS~~~~~~~~~~~~---~~~  319 (481)
                      .   .+... .+-.-.++... .+.          +...|+.++-+|.    +....+  +++.+..++.+.+.   ...
T Consensus       235 t~~~~~~~~~~l~~e~~rg~g-~il----------vn~~G~RF~~~y~~~~El~~rd~--v~~ai~~e~~~~~~~~~~~~  301 (553)
T PRK07395        235 TALTKPGAPRFLISEAVRGEG-AHL----------VDAQGRRFAFDYHPAGELAPRDV--VSRAIFSHLQKTATDPATAH  301 (553)
T ss_pred             eeecCCCCCceeeehhccCCc-EEE----------ECCCCCCCccccCcccccccHHH--HHHHHHHHHHhcCCCCCCce
Confidence            0   00000 00000010000 011          1223333322221    111111  23333334333221   124


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeE
Q 011610          320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL  399 (481)
Q Consensus       320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~  399 (481)
                      +.+|+-+ +..+.+.+                      .+|  .+..+++..|+|+.+                   -|+
T Consensus       302 v~ld~~~-~~~~~~~~----------------------~~p--~i~~~~~~~giD~~~-------------------~~i  337 (553)
T PRK07395        302 VWLDLRP-IPAERIRR----------------------RFP--NIIRVCQKWGIDVFQ-------------------EPI  337 (553)
T ss_pred             EEEeccc-cchHHHHH----------------------hhH--HHHHHHHHcCCCcCC-------------------CEe
Confidence            5565432 22222211                      111  123455557887632                   245


Q ss_pred             EEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011610          400 EVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       400 ~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~  470 (481)
                      +|...     +..|+|||.+++--     .+.+||||+|||+.  -++|  +.||..|..|..+|++||+++++.
T Consensus       338 ~v~P~-----~h~~~GGi~vd~~~-----~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~~  402 (553)
T PRK07395        338 PVAPA-----AHYWMGGVVTDLNN-----QTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELPI  402 (553)
T ss_pred             EEecc-----eeecCCCeeECCCC-----cccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            56544     56899999876422     25799999999985  5776  679999999999999999998643

>PRK08275 putative oxidoreductase; Provisional

Probab=99.90  E-value=1.7e-21  Score=208.63  Aligned_cols=360  Identities=17%  Similarity=0.140  Sum_probs=198.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCCcchhHHhhccC-----CCChh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKE  121 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~~~~~~~~~~~~-----~~~~~  121 (481)
                      .++||+|||+|.||++||+.+++.++|.+|+||||....+  ......++.++.......++..+.....     .....
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   87 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK   87 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence            5689999999999999999999843478999999875532  2112222222211111112222222111     11223


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecCCee-eec----------CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEe
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV-FPV----------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASS  190 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-~p~----------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~  190 (481)
                      +++.+..  ...+.++|++++|+++.....+.+ .+.          ......+.+.|.+.+++.|++|++++.|++|..
T Consensus        88 ~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~  165 (554)
T PRK08275         88 AVYAYAE--HSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT  165 (554)
T ss_pred             HHHHHHH--hhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence            3322211  235788999999998875443322 110          113457888999999999999999999999987


Q ss_pred             cCCCCeEEEEEeecccCceEEEEcCeEEEccCCC---------------------hhHHHHHHHcCCCcccCCCceeEee
Q 011610          191 DNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS---------------------QQGHRLAAQLGHSIVDPVPSLFTFK  249 (481)
Q Consensus       191 ~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~---------------------g~g~~la~~~G~~i~~~~p~l~~~~  249 (481)
                      ++++...+|...+..++....+.|+.||+|||+.                     |+|+.+|.++|..+..+.  .+++.
T Consensus       166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me--~~q~~  243 (554)
T PRK08275        166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLE--CFQIN  243 (554)
T ss_pred             cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCce--EEEEe
Confidence            6313445665432112223468999999999962                     568899999999886543  22221


Q ss_pred             eCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCC
Q 011610          250 IADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLH  329 (481)
Q Consensus       250 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~  329 (481)
                      .   ......+....  .++- ..+    ...+...|+.++..+...+    .+++.+..++.+.+.  .+.+|+- .+.
T Consensus       244 p---~~~~~~~~~~~--~~~~-~~g----~~lvn~~G~RF~~~~~~~~----~~~~ai~~e~~~g~g--~v~ld~~-~~~  306 (554)
T PRK08275        244 P---LIKDYNGPACA--YVTG-PLG----GYTANAKGERFIECDYWSG----QMMWEFYQELQSGNG--PVFLKLD-HLA  306 (554)
T ss_pred             c---eeecCCCCccc--eecc-ccC----cEEeCCCCCccccccCCch----HHHHHHHHHHHcCCC--cEEEECC-CCC
Confidence            1   11111111100  0000 000    1122334555544443333    245555555544333  3455553 233


Q ss_pred             HHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCce
Q 011610          330 IEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKD  409 (481)
Q Consensus       330 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~  409 (481)
                      .+.+.. +.......             ..|.  ...+++..|+|+.+                   -+++|.....+..
T Consensus       307 ~~~~~~-~~~~~~~~-------------~~p~--~~~~~~~~g~D~~~-------------------~~i~v~p~~~~~~  351 (554)
T PRK08275        307 EETIQT-IETILHTN-------------ERPS--RGRFHEGRGTDYRQ-------------------QMVEMHISEIGFC  351 (554)
T ss_pred             HHHHHH-HHhhhhhc-------------ccch--HHHHHHHcCCCccc-------------------CcccccCCCceee
Confidence            332221 11111000             0011  11233345676643                   2344443434433


Q ss_pred             eEEecCCCCCCCCCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610          410 EFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND  473 (481)
Q Consensus       410 a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~  473 (481)
                      ...++|||.+++-    + .+.+||||+|||+..    +|+-.+..|..+|++||++|++++..
T Consensus       352 g~~~~Ggi~~d~~----~-~t~i~gl~a~Ge~~~----~~~~~~~~~~~~G~~a~~~~~~~~~~  406 (554)
T PRK08275        352 SGHSASGVWVNEK----A-ETTVPGLYAAGDMAS----VPHNYMLGAFTYGWFAGENAAEYVAG  406 (554)
T ss_pred             cccccCcEEECCC----C-ccCCCCEEECcccCC----chhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3356799987632    2 367999999998741    23444788999999999999988643

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.90  E-value=2.1e-21  Score=205.80  Aligned_cols=340  Identities=17%  Similarity=0.178  Sum_probs=194.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcchhHHhhcc-----CCCChhch
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKEFR  123 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~~~  123 (481)
                      ++||+|||+|.||++||+++++   |.+|+||||.... .....++++- +.......++..++...     ...+..++
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s~~a~Ggi-~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v   78 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNSHLAQGGI-AAAVATYDSPNDHFEDTLVAGCHHNNERAV   78 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCchhcCccc-eecccCCCCHHHHHHHHHHhccCcCCHHHH
Confidence            6899999999999999999975   7899999987553 3222333332 21111111222222211     11233444


Q ss_pred             hhHHhcCChHHHHHHHHhcCCcceeecCCee---------eec------CCChHHHHHHHHHHHHhCCCEEEcCceEEEE
Q 011610          124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTA  188 (481)
Q Consensus       124 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i  188 (481)
                      +.+...  ..+.++|+.++|+++....++.+         ++.      ......+++.|.+.++ .||+|++++.|+++
T Consensus        79 ~~~~~~--s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~L  155 (510)
T PRK08071         79 RYLVEE--GPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDL  155 (510)
T ss_pred             HHHHHH--HHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhhe
Confidence            333222  34677889999998864322321         111      1224568888888776 69999999999999


Q ss_pred             EecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeee----
Q 011610          189 SSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI----  250 (481)
Q Consensus       189 ~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~----  250 (481)
                      ..++ +...+|.+.+ .++....+.|+.||+|||+              +|+++.++.++|+.+..+.-  +++..    
T Consensus       156 i~~~-g~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~--~q~~pt~~~  231 (510)
T PRK08071        156 IIEN-GRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEF--IQFHPTMLY  231 (510)
T ss_pred             eecC-CEEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcc--eeEeeeEec
Confidence            8765 3445666653 1222347899999999996              46789999999999865432  22211    


Q ss_pred             CccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc---ccchhhcccchhhHHHhHccCceeEEEEecCCC
Q 011610          251 ADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG---LSGPVILRLSAWGARYLFSSCYKGMLTVDFVPD  327 (481)
Q Consensus       251 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g---lsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~  327 (481)
                      .+.....+-.-.++.... .          +....|+.++..+.   -..|- -.+++.+..+..+ +.  .+.+|+-. 
T Consensus       232 ~~~~~~~li~e~~rg~g~-~----------lvn~~G~RF~~~~~~~~e~~~r-d~v~~ai~~~~~~-~~--~v~ld~~~-  295 (510)
T PRK08071        232 ANGRCVGLVSEAVRGEGA-V----------LINEDGRRFMMGIHPLADLAPR-DVVARAIHEELLS-GE--KVYLNISS-  295 (510)
T ss_pred             CCCccceeechhhcCCce-E----------EECCCCCCCccccCccccCCCH-HHHHHHHHHHHHc-CC--eEEEeccc-
Confidence            110000000000000000 1          12223443332221   01110 0133333333332 22  34454311 


Q ss_pred             CCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCC
Q 011610          328 LHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQF  407 (481)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~  407 (481)
                           +.. +..                  ..|  .+..+++..|+|+.+.                   +++|..    
T Consensus       296 -----~~~-~~~------------------~~~--~i~~~~~~~gid~~~~-------------------~i~v~p----  326 (510)
T PRK08071        296 -----IQN-FEE------------------RFP--TISALCEKNGVDIETK-------------------RIPVVP----  326 (510)
T ss_pred             -----hHH-HHH------------------Hhh--HHHHHHHHhCcCCCCC-------------------ceeEeh----
Confidence                 100 100                  111  1345666678887631                   233432    


Q ss_pred             ceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          408 KDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       408 ~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                       .+..|.|||.+|+-    .+ +.|||||+|||+.  .++|  +.||..|..|..+|++||++|+++.
T Consensus       327 -~~h~~~GGi~vd~~----~~-t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~  388 (510)
T PRK08071        327 -GAHFLMGGVKTNLD----GE-TSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA  388 (510)
T ss_pred             -hheEEcCCEEECCC----Cc-ccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence             36789999998742    22 6899999999987  4676  7799999999999999999998764

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.90  E-value=1.1e-21  Score=204.99  Aligned_cols=366  Identities=19%  Similarity=0.199  Sum_probs=193.8

Q ss_pred             eEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC-CCCCceEEecCCceeeccCC------CcchhHHhhcc-----CCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG-KPLSKVKISGGGRCNVTNGH------CADKMILAGHY-----PRG  118 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~-~~g~k~~~sG~g~~n~~~~~------~~~~~~~~~~~-----~~~  118 (481)
                      ||||||+|++|++||+.|++  .| .+|+||||. ..+++...++++.|...+..      ..+...+...+     ...
T Consensus         1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   78 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIN   78 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence            89999999999999999999  79 999999976 45556666666665443210      01111222111     112


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceee----cCCeeeec-----C--CChHHHHHHHHHHHHhCCCEEEcCceEEE
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTE----DDGRVFPV-----S--DSSSSVIDCLLTEAKHRGVVLQTGKVVTT  187 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~----~~g~~~p~-----~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~  187 (481)
                      +..+++.+. ... .+.++|+. .++.+...    ..+..+|.     .  .....+.+.|.+.+++.|++|+++++|++
T Consensus        79 ~~~l~~~~~-~~~-~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~  155 (439)
T TIGR01813        79 DPELVRILA-EES-ADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVED  155 (439)
T ss_pred             CHHHHHHHH-hcc-HHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeE
Confidence            233433322 222 35678888 55544321    11222221     1  24567889999999999999999999999


Q ss_pred             EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------------------ChhHHHHHHHcCCCcccC
Q 011610          188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQLGHSIVDP  241 (481)
Q Consensus       188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~g~g~~la~~~G~~i~~~  241 (481)
                      |..++++..++|.+.. ..+....+.++.||+|||+                          +|+++.|+.++|..+..+
T Consensus       156 l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~  234 (439)
T TIGR01813       156 LIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGAALVDM  234 (439)
T ss_pred             eEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCCCccCC
Confidence            9986413445566543 1122235789999999994                          356788899999887654


Q ss_pred             CCcee-EeeeCcc-ccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHc-cCcee
Q 011610          242 VPSLF-TFKIADS-QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFS-SCYKG  318 (481)
Q Consensus       242 ~p~l~-~~~~~~~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~-~~~~~  318 (481)
                      ..... +....+. ........+... .+-+..+|    +++..   |     ..  ....  ++    +.+.. .+...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~vn~~G----~RF~~---E-----~~--~~~~--~~----~~~~~~~~~~~  293 (439)
T TIGR01813       235 DYIQAHPTASPDEGGFLISEAVRGYG-AILVNKTG----ERFMN---E-----LA--TRDT--VS----DAILAQPGKSA  293 (439)
T ss_pred             chhheecccccCCcceeehhhcccCc-EEEECCCC----CCccc---c-----CC--cHHH--HH----HHHHhCCCCce
Confidence            32211 1111110 000000011000 12222222    22222   1     10  0000  01    11111 11112


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH-----
Q 011610          319 MLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL-----  393 (481)
Q Consensus       319 ~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-----  393 (481)
                      .+..|      ...+ ..... ...        ............+++|+++.+++++...+.+  +.++.++..     
T Consensus       294 ~~i~d------~~~~-~~~~~-~~~--------~~~~g~~~~adtleeLa~~~g~~~~~l~~tv--~~yN~~~~~g~D~~  355 (439)
T TIGR01813       294 YLIFD------DDVY-KKAEM-VDN--------YYRLGVAYKGDSLEELAKQFGIPAAALKKTV--KDYNEYVASGKDTP  355 (439)
T ss_pred             EEEEC------HHHH-Hhhhh-HHH--------HHhcCcEEEeCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCCCcc
Confidence            22222      1111 00000 000        0000001223345566666666655433332  333333321     


Q ss_pred             ----------hccCeEEEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEe-eccc--CcchHHHHHHHH
Q 011610          394 ----------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWS  458 (481)
Q Consensus       394 ----------l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~  458 (481)
                                +.+-||+.....+.  ...|.||+.+++-- +.+  +.++|||||+|||+. .++|  +.+|.++.+|++
T Consensus       356 f~r~~~~~~~i~~~Pfya~~~~~~--~~~t~GGl~~d~~~-~vl~~~g~~IpGLyAaG~~~gg~~g~~~~~G~~~~~~~~  432 (439)
T TIGR01813       356 FGRPMDMPDDLSKSPYYAIKVTPG--VHHTMGGVKINTKA-EVLDAQGKPIPGLFAAGEVTGGVHGANRLGGNAIADCIV  432 (439)
T ss_pred             cCCCCCCCCCCCCCCEEEEEEEcC--ccccccCeEECCCC-eEECCCCCEecccEEeeecccccCCCCCCchhhhhhhhh
Confidence                      33556665444443  56899999998632 222  357899999999976 5555  568999999999


Q ss_pred             HHHHHHH
Q 011610          459 GGYIAGT  465 (481)
Q Consensus       459 sG~~AG~  465 (481)
                      +||+||+
T Consensus       433 ~GriAg~  439 (439)
T TIGR01813       433 FGRIAGE  439 (439)
T ss_pred             hhHhhcC
Confidence            9999984

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.89  E-value=1.1e-20  Score=203.97  Aligned_cols=199  Identities=17%  Similarity=0.164  Sum_probs=128.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccCCCcchhHHhhcc-----CCCChhc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKEF  122 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~~  122 (481)
                      .++||+|||+|+||++||+.+++..+|.+|+||||....+ .....|.+.+|.......++..+....     ...+..+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l   89 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL   89 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence            4689999999999999999999821289999999875543 222222212221111111222222111     1122334


Q ss_pred             hhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecC-----CChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCe
Q 011610          123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-----DSSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRK  196 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-----~~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~  196 (481)
                      ++.+...  ..+.++|+.++|+++.....+.+++..     .....+.+.|.+.+++.+ |++++++.|+++..++ +..
T Consensus        90 v~~~~~~--s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v  166 (608)
T PRK06854         90 VYDIARH--VDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRI  166 (608)
T ss_pred             HHHHHHh--HHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEE
Confidence            3333222  357889999999988765555555432     235577888888888876 9999999999998765 444


Q ss_pred             EEEEEeecccCceEEEEcCeEEEccCC-----------------------ChhHHHHHHHcCCCcccCCCceeEeee
Q 011610          197 FLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQQGHRLAAQLGHSIVDPVPSLFTFKI  250 (481)
Q Consensus       197 ~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~g~g~~la~~~G~~i~~~~p~l~~~~~  250 (481)
                      ++|...+...+....+.|+.||+|||+                       +|+|+.++.++|..+..+.+.++|..+
T Consensus       167 ~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~qf~p~~~  243 (608)
T PRK06854        167 AGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTFENRFIPLRF  243 (608)
T ss_pred             EEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCCcceEecccc
Confidence            555432211222347999999999994                       267899999999999888776666554

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.89  E-value=6.7e-21  Score=203.24  Aligned_cols=352  Identities=16%  Similarity=0.167  Sum_probs=194.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCCcchhHHhhcc-----CCCChh
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKE  121 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~  121 (481)
                      +.++||+|||+|.||++||+.|++  . .+|+||||... ++....++++-+..... ..++..+....     ...+..
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~-~ds~e~~~~d~~~~g~~~~d~~   81 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGSTFYAQGGIAAVLDE-TDSIESHVEDTLIAGAGLCDED   81 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCChhhccCCeeeccCC-CccHHHHHHHHHHHccCCCCHH
Confidence            457899999999999999999998  4 79999998754 33333344443222211 11122222211     112333


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecC--C--e--------------eeecCCChHHHHHHHHHHHHhC-CCEEEcC
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDD--G--R--------------VFPVSDSSSSVIDCLLTEAKHR-GVVLQTG  182 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~--g--~--------------~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~  182 (481)
                      +++.+..  ...+.++|+.++|+++.....  +  .              +++.......+...|.+.+.+. ||+|+.+
T Consensus        82 ~v~~~~~--~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~  159 (536)
T PRK09077         82 AVRFIAE--NAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLER  159 (536)
T ss_pred             HHHHHHH--HHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence            4433322  234677899999998864321  1  1              1111123457778888887765 8999999


Q ss_pred             ceEEEEEecC-----CCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610          183 KVVTTASSDN-----AGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP  243 (481)
Q Consensus       183 ~~V~~i~~~~-----~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p  243 (481)
                      +.|+++..++     ++...+|...+..++....+.|+.||+|||+              +|+|+.++.++|..+..+..
T Consensus       160 ~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~  239 (536)
T PRK09077        160 HNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEF  239 (536)
T ss_pred             EEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcCccc
Confidence            9999998642     0244566654312233457899999999994              57889999999999865432


Q ss_pred             ceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc----ccchhhcccchhhHHHhHccCceeE
Q 011610          244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCYKGM  319 (481)
Q Consensus       244 ~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g----lsG~~il~lS~~~~~~~~~~~~~~~  319 (481)
                        +++...--......+.-+.. .++  ..+    ..++...|+.++.+|.    +....+  +++.+..++...+. ..
T Consensus       240 --~q~~pt~~~~~~~~~~l~~e-~~r--g~g----~~lvn~~G~RF~~~~~~~~el~~rd~--v~~ai~~~~~~~g~-~~  307 (536)
T PRK09077        240 --NQFHPTCLYHPQARSFLITE-ALR--GEG----AYLKLPDGTRFMPDFDERAELAPRDI--VARAIDHEMKRLGA-DC  307 (536)
T ss_pred             --eeEecceecCCCCCceeecH-HHc--CCC----CEEECCCCCCcccccCcccccCchhH--HHHHHHHHHHhcCC-Ce
Confidence              22221100000000100000 000  000    0112223444333221    111111  23333333332222 23


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeE
Q 011610          320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL  399 (481)
Q Consensus       320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~  399 (481)
                      +++|+-+. ..+.    +..   .+|                .+. ..+...|+++.+                   -|+
T Consensus       308 v~ld~~~~-~~~~----~~~---~~~----------------~~~-~~~~~~g~d~~~-------------------~pi  343 (536)
T PRK09077        308 VYLDISHK-PADF----IRQ---HFP----------------TIY-ERCLELGIDITK-------------------EPI  343 (536)
T ss_pred             EEEECCCC-cHHH----HHH---HCh----------------HHH-HHHHHhCcCCCC-------------------Cce
Confidence            55565421 2221    111   111                111 123335666532                   234


Q ss_pred             EEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          400 EVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       400 ~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      +|...     +..|.|||.+++-    . .+.|||||+|||+.  .++|  +.||..|..|+.+|++||++|++++
T Consensus       344 ~v~p~-----~h~t~GGi~vd~~----~-~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~  409 (536)
T PRK09077        344 PVVPA-----AHYTCGGVMVDLH----G-RTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL  409 (536)
T ss_pred             eeeee-----eeEecCCeeECCC----C-ccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence            44332     6789999987632    2 25899999999986  5776  6699999999999999999998875

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.89  E-value=2.6e-21  Score=205.45  Aligned_cols=389  Identities=16%  Similarity=0.147  Sum_probs=193.8

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeec-cC-----CCcc-hhHHhhccCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVT-NG-----HCAD-KMILAGHYPR  117 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~-~~-----~~~~-~~~~~~~~~~  117 (481)
                      .++.++||+|||+| +|++||++|++  .|++|+||||.. .|.....++++..... +.     ...+ ...+...|..
T Consensus         3 ~~d~~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~   79 (513)
T PRK12837          3 AWDEEVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHA   79 (513)
T ss_pred             CCCCccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHH
Confidence            35568999999999 99999999999  799999999764 4554444443211111 10     0011 1111111111


Q ss_pred             -----CChhchhhHHhcCChHHHHHHHHh-cCCcceeec-------------CC--eeeecC------------------
Q 011610          118 -----GHKEFRGSFFSLHGPMDTMSWFSD-HGVELKTED-------------DG--RVFPVS------------------  158 (481)
Q Consensus       118 -----~~~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~~~-------------~g--~~~p~~------------------  158 (481)
                           .+..+.+.+..  ...+.++|+++ .|+++....             .+  ..+|..                  
T Consensus        80 ~~~~~~~~~l~~~~~~--~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (513)
T PRK12837         80 VVGDRTPRDLQETYVR--GGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLD  157 (513)
T ss_pred             HhcccCCHHHHHHHHH--HHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccc
Confidence                 12223322221  23467789876 587764311             00  111110                  


Q ss_pred             ------------CChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcC-eEEEccCC-
Q 011610          159 ------------DSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEAD-YLLIASGS-  223 (481)
Q Consensus       159 ------------~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad-~VIlAtG~-  223 (481)
                                  .....++..|.+.+.+ .|++|+++++|++|..++ +...+|....  .+....+.|+ .||+|||+ 
T Consensus       158 ~~~~~~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~  234 (513)
T PRK12837        158 TERLGAPPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVED-GRVVGAVVER--GGERRRVRARRGVLLAAGGF  234 (513)
T ss_pred             hhhhccCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEE--CCcEEEEEeCceEEEeCCCc
Confidence                        0123466677776655 499999999999998765 4555666542  2334578996 79999995 


Q ss_pred             -------------------------ChhHHHHHHHcCCCcccCCCce-eEeeeCccccccccCceeccEEEEEEecCccC
Q 011610          224 -------------------------SQQGHRLAAQLGHSIVDPVPSL-FTFKIADSQLTELSGVSFPKVVAKLKLENVQR  277 (481)
Q Consensus       224 -------------------------~g~g~~la~~~G~~i~~~~p~l-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  277 (481)
                                               +|+|..|+.++|..+..+.-.. .+....+..... .+.... -.+-+..+|   
T Consensus       235 ~~n~~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~~~-~~~~~~-~~i~Vn~~G---  309 (513)
T PRK12837        235 EQNDDMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGRSA-FALWFT-GGIFVDQHG---  309 (513)
T ss_pred             cCCHHHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCcce-eccccC-ceEEECCCC---
Confidence                                     3567788888887764332111 110000000000 011101 112122222   


Q ss_pred             CCCccceecCeEEEeccccchhhcccchhhHHHhHccCc--eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCC
Q 011610          278 SSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCY--KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPP  355 (481)
Q Consensus       278 ~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~--~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  355 (481)
                       +++..   |...  +     ..  +++.+.........  ...+..|-      + ..+................+...
T Consensus       310 -kRF~n---E~~~--~-----~~--~~~a~~~~~~~~~~~~~~~~I~D~------~-~~~~~~~~~~~~~~~~~~~~~~~  369 (513)
T PRK12837        310 -ERFVN---ESAP--Y-----DR--LGRAVIAEMDSGGMTLPFWMIYDD------R-EGEVPPVKATNVSMVETAQYVAA  369 (513)
T ss_pred             -CCccc---CCCc--H-----hH--HHHHHHhhcccCCCCcceEEEECc------h-hhhccCccccCCCCcCcHHHhhc
Confidence             22221   2110  0     00  11111111100100  12222221      0 00000000000000000000111


Q ss_pred             ccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccC------------------eEEEcccCCCcee------E
Q 011610          356 EFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHC------------------TLEVAGKGQFKDE------F  411 (481)
Q Consensus       356 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~------------------~~~v~~~~~~~~a------~  411 (481)
                      +..+....+++|+++++++++...+.+  +.+++++..=++-                  .+....+.||--.      .
T Consensus       370 g~~~kaDTleELA~k~gid~~~L~~Tv--~~yN~~~~~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~  447 (513)
T PRK12837        370 GLWRTADTLEELAAKIGVPADALTATV--ARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDL  447 (513)
T ss_pred             CCeeecCCHHHHHHHcCCCHHHHHHHH--HHHHHHHhcCCCccCCCCcchhhccccCCcccceecccCCeEEEEeccccc
Confidence            001123456777888888776655544  4555555332221                  1122224444333      4


Q ss_pred             EecCCCCCCCC-CcccccccCCCCeEEEEEEe-eccc--Cc-chHHHHHHHHHHHHHHHHHhH
Q 011610          412 VTAGGVPLSEI-SLNTMESKIHPRLFFAGEVL-NVDG--VT-GGFNFQNAWSGGYIAGTSIGK  469 (481)
Q Consensus       412 vt~GGv~~~ei-~~~t~esk~~~gLy~~GE~l-dv~g--~~-GGynl~~A~~sG~~AG~~aa~  469 (481)
                      .|.||+.+++- ...+-+.++|||||+|||+. .+.|  +. +|.++..|+++||+||++|+.
T Consensus       448 ~T~GGl~in~~~qVl~~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~  510 (513)
T PRK12837        448 GTKGGLRTDTAARVLDTDGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG  510 (513)
T ss_pred             eeCCCceECCCceEECCCCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence            48999998862 22333578999999999975 5655  33 488899999999999999964

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.88  E-value=9.4e-22  Score=210.41  Aligned_cols=187  Identities=24%  Similarity=0.246  Sum_probs=116.9

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeecc----C-CCcc-hhHH---hhccC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTN----G-HCAD-KMIL---AGHYP  116 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~----~-~~~~-~~~~---~~~~~  116 (481)
                      ++.++||+|||+|.+|++||+.+++  .|.+|+|||+. ..|.....++++.+...+    . ...+ ...+   ...+.
T Consensus         3 ~d~~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~   80 (557)
T PRK12844          3 WDETYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVV   80 (557)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHh
Confidence            4568999999999999999999999  79999999976 445554455544321111    0 0001 1111   11111


Q ss_pred             C-----CChhchhhHHhcCChHHHHHHHHhcCCcceeec----------CC----ee-eec-------------------
Q 011610          117 R-----GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTED----------DG----RV-FPV-------------------  157 (481)
Q Consensus       117 ~-----~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~----------~g----~~-~p~-------------------  157 (481)
                      .     ....+++.++.  ...+.++|++++|+++....          .+    +. +|.                   
T Consensus        81 ~~~~~~~~~~~~~~~~~--~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  158 (557)
T PRK12844         81 GDQGPASSPERREAYLR--AGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMA  158 (557)
T ss_pred             cccccCCCHHHHHHHHh--hhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccc
Confidence            1     12233333222  33578899999998875321          11    10 000                   


Q ss_pred             ---------------------------------------------CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610          158 ---------------------------------------------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN  192 (481)
Q Consensus       158 ---------------------------------------------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~  192 (481)
                                                                   ......++..|.+.+++.|++|+++++|++|..++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~  238 (557)
T PRK12844        159 TPPGTVVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALAAGVPLWTNTPLTELIVED  238 (557)
T ss_pred             ccccccccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC
Confidence                                                         00124566778888999999999999999999765


Q ss_pred             CCCeEEEEEeecccCceEEEEcC-eEEEccCC---------------------------ChhHHHHHHHcCCCccc
Q 011610          193 AGRKFLLKVEKRTMNLVECIEAD-YLLIASGS---------------------------SQQGHRLAAQLGHSIVD  240 (481)
Q Consensus       193 ~~~~~~V~~~~~~~~~~~~i~ad-~VIlAtG~---------------------------~g~g~~la~~~G~~i~~  240 (481)
                       +...+|....  .++...+.|+ .||+|||+                           +|++..++.++|..+..
T Consensus       239 -g~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~  311 (557)
T PRK12844        239 -GRVVGVVVVR--DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDL  311 (557)
T ss_pred             -CEEEEEEEEE--CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCccc
Confidence             4556666642  2334568885 79999994                           35677788888877643

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.88  E-value=9.1e-21  Score=199.06  Aligned_cols=335  Identities=18%  Similarity=0.215  Sum_probs=188.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhc-----cCCCChhchh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGH-----YPRGHKEFRG  124 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~-----~~~~~~~~~~  124 (481)
                      ++||+|||+|+|||+||+.|++  .|.+|+||||.........+.+|.+ .......++..+...     ....++.+++
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~~~~s~~a~ggi~-~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~   77 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIKKSNSYLAQAGIA-FPILEGDSIRAHVLDTIRAGKYINDEEVVW   77 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcHHHcCCcc-cccCCCCcHHHHHHHHHHHhcCCCCHHHHH
Confidence            3799999999999999999999  7999999997643321111122221 111011111111111     1112334443


Q ss_pred             hHHhcCChHHHHHHHHhcCCcceee--cCCeeeec-----CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE
Q 011610          125 SFFSLHGPMDTMSWFSDHGVELKTE--DDGRVFPV-----SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF  197 (481)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~~~p~-----~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~  197 (481)
                      .+..  ...+.++|+.++|+++...  ..+..||.     ......+.+.|.+.+++.|++++.+ .++.+..++ +..+
T Consensus        78 ~~~~--~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~  153 (466)
T PRK08401         78 NVIS--KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAY  153 (466)
T ss_pred             HHHH--HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEE
Confidence            3322  2356788999999988632  23444442     2345678999999999999999876 788887654 3445


Q ss_pred             EEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCcee
Q 011610          198 LLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSF  263 (481)
Q Consensus       198 ~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~  263 (481)
                      +|.+.      +..+.++.||+|||+              ++++..++.++|..+..+.  .+++.... ....-.+.-+
T Consensus       154 Gv~~~------g~~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me--~~q~~p~~-~~~~~~~~l~  224 (466)
T PRK08401        154 GVFLD------GELLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLE--FVQFHPTG-FIGKRGTYLI  224 (466)
T ss_pred             EEEEC------CEEEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCce--eeEEeccc-ccCCCCCeEE
Confidence            66664      457999999999995              3567788888898865443  22322110 0000000000


Q ss_pred             ccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHh
Q 011610          264 PKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIR  343 (481)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~  343 (481)
                      . ..++  ..+    ..++...|+.++.+.  ....+  +++.+..+... +.  .+.+|.-.   .+++    .+   .
T Consensus       225 ~-e~~r--~~g----~ilvN~~G~RF~~E~--~~rd~--v~~ai~~~~~~-~~--~v~ld~~~---~~~~----~~---~  280 (466)
T PRK08401        225 S-EAVR--GAG----AKLVTGDGERFVNEL--ETRDI--VARAIYRKMQE-GK--GVFLDATG---IEDF----KR---R  280 (466)
T ss_pred             e-eecc--cCc----eEEECCCCCChhccc--ccHHH--HHHHHHHHHhc-CC--EEEEeCcC---HHHH----HH---H
Confidence            0 0000  000    011222344333221  11111  23333333222 12  34455421   1111    11   1


Q ss_pred             chhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCC
Q 011610          344 FAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEIS  423 (481)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~  423 (481)
                                     +|. +. ..+...|+|+.+                   .++++...     +..|.|||.+++- 
T Consensus       281 ---------------~~~-~~-~~~~~~G~D~~~-------------------~~i~v~p~-----~h~t~GGi~vd~~-  318 (466)
T PRK08401        281 ---------------FPQ-IY-AFLRKEGIDPSR-------------------DLIPVTPI-----AHYTIGGISVDTF-  318 (466)
T ss_pred             ---------------hHH-HH-HHHHHcCCCcCC-------------------cccccccc-----eeecCCCEEECCC-
Confidence                           111 11 223346777642                   23444333     5789999987642 


Q ss_pred             cccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011610          424 LNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       424 ~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~  470 (481)
                         ++ +.|||||+|||+.  .++|  +.||..|..|..+|++||++|++.
T Consensus       319 ---~~-t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~  365 (466)
T PRK08401        319 ---YR-TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE  365 (466)
T ss_pred             ---Cc-ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence               23 6899999999986  5776  679999999999999999999764

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.88  E-value=1.5e-20  Score=198.85  Aligned_cols=360  Identities=20%  Similarity=0.256  Sum_probs=213.3

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCC---cchhHHhhccC-----
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHC---ADKMILAGHYP-----  116 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~---~~~~~~~~~~~-----  116 (481)
                      ...++||+|||||.|||+||+.+++  .|.+|+|+||..+.+  +..+.|+..+.+.+...   .+++.+...-.     
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~   80 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDG   80 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCC
Confidence            3467999999999999999999999  789999999875543  33333433333333221   01212221111     


Q ss_pred             CCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeee--------------ecCCChHHHHHHHHHHHHh-CCCEEEc
Q 011610          117 RGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF--------------PVSDSSSSVIDCLLTEAKH-RGVVLQT  181 (481)
Q Consensus       117 ~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~--------------p~~~~a~~~~~~l~~~~~~-~Gv~i~~  181 (481)
                      ..+.+.+.. +.. ...+.+.+++.+|+++.....|.++              ....-...++..|.+.+.+ .+++++.
T Consensus        81 l~dqd~i~~-~~~-~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~  158 (562)
T COG1053          81 LGDQDAVEA-FAD-EAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFD  158 (562)
T ss_pred             cCCHHHHHH-HHH-hhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhh
Confidence            112222222 122 2346778999999988766555332              2223356788888888887 6778999


Q ss_pred             CceEEEEEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee
Q 011610          182 GKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF  246 (481)
Q Consensus       182 ~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~  246 (481)
                      +..+.++..++ ++ ..++..-+..++.-..++++.||+|||+              +++|+.|+.++|..+..+..  +
T Consensus       159 ~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~--~  235 (562)
T COG1053         159 EYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEF--V  235 (562)
T ss_pred             hhhhhhheecC-CCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCc--c
Confidence            99999998775 34 4566554433444567889999999995              46899999999998655422  2


Q ss_pred             EeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccc------hhhHHHhHccCc----
Q 011610          247 TFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLS------AWGARYLFSSCY----  316 (481)
Q Consensus       247 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS------~~~~~~~~~~~~----  316 (481)
                      ++....-  .. +|+=+. ..++  ..|    ....+..|+.....++ ..|..+++.      +.+..++.+.+.    
T Consensus       236 Q~hpt~~--~~-~g~l~~-e~~R--geG----G~l~N~~Gerf~e~~~-~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~  304 (562)
T COG1053         236 QFHPTGL--VG-SGILIT-EAVR--GEG----GILLNKDGERFMERYG-YAPKYKELAPRDVVSRAILMEIREGRGVDGP  304 (562)
T ss_pred             cccccee--cC-CceEEe-eecc--cCC----CeEecCCcceeecccc-ccccccccCCcchHHHHHHHHHhcCCCcccC
Confidence            2222110  01 232111 1111  011    1233445777776654 344444443      222333333322    


Q ss_pred             -eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhc
Q 011610          317 -KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLK  395 (481)
Q Consensus       317 -~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~  395 (481)
                       ...+.+|+-+ +..+++.+.                      +|. .........|+|+.+                  
T Consensus       305 ~~~~v~ldl~h-lg~~~~~~~----------------------l~~-~~~~~~~~~g~D~~~------------------  342 (562)
T COG1053         305 GGDYVYLDLRH-LGKEELEER----------------------LPG-IRELAKKFAGIDPVK------------------  342 (562)
T ss_pred             CCceEEEEhhh-cChHHHHhc----------------------Cch-HHHHHHhhcCCCccc------------------
Confidence             1355566654 222212111                      111 122233335676653                  


Q ss_pred             cCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEeecc--c--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          396 HCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVD--G--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       396 ~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~--g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                       -|++|..+     ..-|+|||+++.  .. . -+.+||||+|||+..+.  |  ..||..|..++.+|++||..|++++
T Consensus       343 -~p~~v~p~-----~Hy~mGGi~~~~--~~-~-~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~  412 (562)
T COG1053         343 -EPIPVRPT-----VHYTMGGIPTNT--GR-V-ETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYA  412 (562)
T ss_pred             -ceeEeccc-----ceeccCCEeecc--cc-c-ccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHH
Confidence             22334333     557899999986  11 1 23399999999999754  4  7899899999999999999999998


Q ss_pred             hHhhh
Q 011610          472 NDATL  476 (481)
Q Consensus       472 ~~~~~  476 (481)
                      +++-+
T Consensus       413 ~~~~~  417 (562)
T COG1053         413 KEKSG  417 (562)
T ss_pred             HhccC
Confidence            76543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.87  E-value=5.1e-20  Score=197.46  Aligned_cols=198  Identities=17%  Similarity=0.137  Sum_probs=128.0

Q ss_pred             eEEEECCchHHHHHHHHHh----ccCCCCcEEEEeCCCCCCceEEecCC-ceeec-cC--CCcchhHHhhc-----cCCC
Q 011610           52 LLVVVGGGAAGVYGAIRAK----TVAPKLNVVIIEKGKPLSKVKISGGG-RCNVT-NG--HCADKMILAGH-----YPRG  118 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la----~~~~g~~V~llE~~~~g~k~~~sG~g-~~n~~-~~--~~~~~~~~~~~-----~~~~  118 (481)
                      ||+|||+|.|||+||+.++    +  .|.+|+||||...++...+++++ .++.. ..  ...++..+...     ....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~   78 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLV   78 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCC
Confidence            8999999999999999998    5  68999999987665432233331 12211 10  01112222211     1122


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceeec-CCeeeecC-----CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTED-DGRVFPVS-----DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN  192 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~-~g~~~p~~-----~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~  192 (481)
                      +..+++.+..  ...+.++|+.++|+++.... .+...+..     .....+.+.+...+.+.+++++.++.|+++..++
T Consensus        79 d~~lV~~lv~--~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~  156 (614)
T TIGR02061        79 REDLIFDMAR--HVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDK  156 (614)
T ss_pred             cHHHHHHHHH--HHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecC
Confidence            3344433322  23578899999999987542 33222110     1245666677777777789999999999999753


Q ss_pred             C--CCeEEEEEeecccCceEEEEcCeEEEccCC-----------------------ChhHHHHHHHcCCCcccCCCceeE
Q 011610          193 A--GRKFLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQQGHRLAAQLGHSIVDPVPSLFT  247 (481)
Q Consensus       193 ~--~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~g~g~~la~~~G~~i~~~~p~l~~  247 (481)
                      +  +..++|...+..++....+.|+.||+|||+                       +|+|+.+|.++|+.+.++.+.++|
T Consensus       157 ~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~aGA~l~dme~qf~p  236 (614)
T TIGR02061       157 NTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQAGAEMTQMENRFVP  236 (614)
T ss_pred             CCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHHcCCCccCCccceec
Confidence            1  245576653322333457899999999995                       245789999999999999888888


Q ss_pred             eeeCcc
Q 011610          248 FKIADS  253 (481)
Q Consensus       248 ~~~~~~  253 (481)
                      +.+.++
T Consensus       237 t~~~~~  242 (614)
T TIGR02061       237 ARFKDG  242 (614)
T ss_pred             ceeccc
Confidence            877643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.87  E-value=1.1e-20  Score=202.24  Aligned_cols=173  Identities=14%  Similarity=0.136  Sum_probs=102.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC---CCCceEEecCCceeeccCC------CcchhHHhhccC---
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK---PLSKVKISGGGRCNVTNGH------CADKMILAGHYP---  116 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~---~g~k~~~sG~g~~n~~~~~------~~~~~~~~~~~~---  116 (481)
                      .++||+|||+|.+||+||+.+++  .|++|+||||..   .|+....++++-+-..+..      ..+...+...+.   
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~   80 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSA   80 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhcc
Confidence            57899999999999999999999  799999999765   4555544544322111100      011111111111   


Q ss_pred             --CCChhc-----hhhHHhcCChHHHHHHHHhcCCcceeec----C--------Ceeeec----CCChHHHHHHHHHHHH
Q 011610          117 --RGHKEF-----RGSFFSLHGPMDTMSWFSDHGVELKTED----D--------GRVFPV----SDSSSSVIDCLLTEAK  173 (481)
Q Consensus       117 --~~~~~~-----~~~~l~~~~~~~~~~~~~~~Gi~~~~~~----~--------g~~~p~----~~~a~~~~~~l~~~~~  173 (481)
                        .....+     ...+ ......+.++|++++|+++....    .        +..+|.    ......++..|.+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~  159 (549)
T PRK12834         81 GFDRPEDHWPRQWAEAY-VDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVR  159 (549)
T ss_pred             CCCCccccchHHHHHHH-HHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHH
Confidence              011111     1222 22223578899999999875321    0        001111    1123457777776654


Q ss_pred             ----hCCCEEEcCceEEEEEecCCCCeEEEEEeeccc-------------CceEEEEcCeEEEccCCCh
Q 011610          174 ----HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM-------------NLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       174 ----~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~-------------~~~~~i~ad~VIlAtG~~g  225 (481)
                          +.||+|++++++++|..++ +..++|.......             ++...+.|+.||+|||+.+
T Consensus       160 ~~~~~~gv~i~~~t~~~~Li~~~-g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~  227 (549)
T PRK12834        160 EAAARGLVRFRFRHRVDELVVTD-GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG  227 (549)
T ss_pred             HHHHhCCceEEecCEeeEEEEeC-CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence                3369999999999998765 4566776521000             1124789999999999633

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.86  E-value=8.4e-20  Score=205.33  Aligned_cols=356  Identities=17%  Similarity=0.130  Sum_probs=193.8

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccC---CCcchhHHhhccC-----CC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNG---HCADKMILAGHYP-----RG  118 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~---~~~~~~~~~~~~~-----~~  118 (481)
                      ...++||+|||||.|||+||+.+++  .|.+|+|+||..++.+.... .+.+.+.+.   ...++..+.....     ..
T Consensus        10 ~~~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~~~sg~~~-~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~   86 (897)
T PRK13800         10 LRLDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHVRHSGALA-MGMDGVNNAVIPGKAEPEDYVAEITRANDGIV   86 (897)
T ss_pred             ceeecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccccCCCccc-CCchhhhcccCCCccCHHHHHHHHHhhcCCCC
Confidence            3357899999999999999999998  78999999987654221111 112222111   1112222222211     11


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCee----eec-------CCChHHHHHHHHHHHHhC----CCEEEcCc
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV----FPV-------SDSSSSVIDCLLTEAKHR----GVVLQTGK  183 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~----~p~-------~~~a~~~~~~l~~~~~~~----Gv~i~~~~  183 (481)
                      +..+++.+. . ...+.++|+.++|+++.....|.+    +..       ......+...|.+.+.+.    ++.+..++
T Consensus        87 d~~~v~~~~-~-~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~  164 (897)
T PRK13800         87 NQRTVYQTA-T-RGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRL  164 (897)
T ss_pred             CHHHHHHHH-H-hHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEece
Confidence            233333321 1 224678899999999876544422    111       113556777777776544    68888888


Q ss_pred             eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC---------------------hhHHHHHHHcCCCcccCC
Q 011610          184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS---------------------QQGHRLAAQLGHSIVDPV  242 (481)
Q Consensus       184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~---------------------g~g~~la~~~G~~i~~~~  242 (481)
                      .+.++..++ +...+|..-+..++....+.|+.||+|||+.                     |+|+.++.++|..+..+.
T Consensus       165 ~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~~~~tGDG~amA~raGA~l~~me  243 (897)
T PRK13800        165 MPVRVLTEG-GRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGAELSGIE  243 (897)
T ss_pred             eeEEEEeeC-CEEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCCCCcccHHHHHHHHcCCcccCce
Confidence            888887654 4455666533223334578999999999962                     578999999999986553


Q ss_pred             CceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEE
Q 011610          243 PSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTV  322 (481)
Q Consensus       243 p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~  322 (481)
                        ++++..   ......|..+. ..++  ..|    ..+.+..|+.++...-.++-    +...+.+++.+.+.  .+++
T Consensus       244 --~vqfhP---t~~~~~g~~~~-~~~~--~~G----~~lvN~~GeRFm~~~~~~~~----i~~~i~~ei~~g~g--~vyL  305 (897)
T PRK13800        244 --CFQINP---LIKDYNGPACA-YVAN--PFG----GYQVNAQGERFVDSDYWSGQ----MMAEVKREIESARG--PIYL  305 (897)
T ss_pred             --eEEeec---cccCCCCchhh-eeec--ccC----cEEECCCCCccccCcccchh----HHHHHHHHHhcCCC--CEEE
Confidence              344432   11112222111 0110  001    12334455554432223331    11123345544333  3555


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEc
Q 011610          323 DFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVA  402 (481)
Q Consensus       323 d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~  402 (481)
                      |+- .+..+.++ .|.......             ..|-  ...++...|+++.+.                   ++++.
T Consensus       306 D~~-~l~~e~~~-~l~~~~~~~-------------~~p~--~~~~~~~~G~d~~~~-------------------~i~v~  349 (897)
T PRK13800        306 KVS-HLPEETLS-ALESILHTT-------------ERPT--RGTFHANRGHDYRTH-------------------DIEMH  349 (897)
T ss_pred             ECC-CCCHHHHH-HHHHhhhhc-------------ccch--HHHHHHhcCCCcccc-------------------cceec
Confidence            553 23333332 221111110             0011  112333357776431                   22232


Q ss_pred             ccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEeecccCcchHH-HHHHHHHHHHHHHHHhHHhh
Q 011610          403 GKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFN-FQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       403 ~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGyn-l~~A~~sG~~AG~~aa~~~~  472 (481)
                      ....+..+..++|||.+|+-    + .+.+||||+|||+.     |++.| |.-|+..|++||++|++++.
T Consensus       350 p~~~~~~~~~~~GGi~vd~~----~-~T~v~GLfAaGE~a-----~~~~nsl~~a~v~G~~Ag~~a~~~~~  410 (897)
T PRK13800        350 ISEIGLCSGHSASGVWVDEH----A-RTTVPGLYAAGDLA-----CVPHNYMIGAFVFGDLAGAHAAGTLA  410 (897)
T ss_pred             ccccccccCCCcceEEecCC----C-cccCCCeEechhcc-----CcchhhhhhHHHhHHHHHHHHHHHHh
Confidence            22233334457899987632    2 35799999999875     33334 66799999999999998864

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.86  E-value=8.3e-20  Score=209.75  Aligned_cols=393  Identities=19%  Similarity=0.148  Sum_probs=203.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccC-----CCcchhH-Hhhc------
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNG-----HCADKMI-LAGH------  114 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~-----~~~~~~~-~~~~------  114 (481)
                      +..+||||||+|.||++||+.+++  .|.+|+||||. ..|+....++++-+...+.     ...+..+ +...      
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~  484 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGK  484 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhcc
Confidence            356899999999999999999999  79999999976 5554333333332211110     0011111 1111      


Q ss_pred             cCCCChhchhhHHhcCChHHHHHHHHhcCCcceee--cCCeeeecC------------CChHHHHHHHHHHHHh---CCC
Q 011610          115 YPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE--DDGRVFPVS------------DSSSSVIDCLLTEAKH---RGV  177 (481)
Q Consensus       115 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~~~p~~------------~~a~~~~~~l~~~~~~---~Gv  177 (481)
                      ....+..+++.+..  ...+.++|+.++|+++...  ..+..++..            .....+++.|.+.+++   .||
T Consensus       485 ~~~~d~~lv~~~~~--~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv  562 (1167)
T PTZ00306        485 GGHCDPGLVKTLSV--KSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRV  562 (1167)
T ss_pred             CCCCCHHHHHHHHH--hhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCc
Confidence            01223344443322  2357889999999887531  111111110            0134567778777765   499


Q ss_pred             EEEcCceEEEEEecCC----C----CeEEEEEeec--ccCceEEEEcCeEEEccCCC-----------------------
Q 011610          178 VLQTGKVVTTASSDNA----G----RKFLLKVEKR--TMNLVECIEADYLLIASGSS-----------------------  224 (481)
Q Consensus       178 ~i~~~~~V~~i~~~~~----~----~~~~V~~~~~--~~~~~~~i~ad~VIlAtG~~-----------------------  224 (481)
                      +|++++++++|..+++    +    ...+|.+.+.  .++....+.|+.||+|||+.                       
T Consensus       563 ~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~~~~~  642 (1167)
T PTZ00306        563 TIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTT  642 (1167)
T ss_pred             EEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHHhCccccCCCCC
Confidence            9999999999997531    1    3456766531  02333579999999999952                       


Q ss_pred             ------hhHHHHHHHcCCCcccCCCcee-Ee--eeCccc-cc-cc---cCceeccEEEEEEecCccCCCCccceecCeEE
Q 011610          225 ------QQGHRLAAQLGHSIVDPVPSLF-TF--KIADSQ-LT-EL---SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLV  290 (481)
Q Consensus       225 ------g~g~~la~~~G~~i~~~~p~l~-~~--~~~~~~-~~-~l---~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lf  290 (481)
                            |+|..|+.++|..+..+..... +.  ...... .. .+   ..++... .+-+.            ..|+.+.
T Consensus       643 ~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g-~ilVN------------~~GkRF~  709 (1167)
T PTZ00306        643 NGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSG-GVLLN------------KNGERFV  709 (1167)
T ss_pred             CCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCcccceeeehhcCCc-eEEEC------------CCCCCcc
Confidence                  4567777777776543321110 00  000000 00 00   0000000 11121            1222221


Q ss_pred             EeccccchhhcccchhhHHHhHcc----C-ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHH
Q 011610          291 THWGLSGPVILRLSAWGARYLFSS----C-YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWK  365 (481)
Q Consensus       291 t~~glsG~~il~lS~~~~~~~~~~----~-~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  365 (481)
                      .+..  ...+  +++.+.......    + ....+..|      .... +.+..    ......  ....+..+....++
T Consensus       710 nE~~--~~~~--~~~ai~~~~~~~~~~~~~~~~~~i~D------~~~~-~~~~~----~~~~~~--~~~~g~~~kADTle  772 (1167)
T PTZ00306        710 NELD--LRSV--VSQAIIAQGNEYPGSGGSKFAYCVLN------EAAA-KLFGK----NSLGFY--WKRLGLFQRVDDVK  772 (1167)
T ss_pred             cccC--cHHH--HHHHHHhhcccccccccCceEEEEEc------hHHH-hhhhh----hhhhhh--hhhcCeEEEeCCHH
Confidence            1110  0000  111111100000    0 01222221      1110 00000    000000  00000022345678


Q ss_pred             HHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEE------E--cccCCCce------eEEecCCCCCCCC----Ccc--
Q 011610          366 YILGREGLSGDTLWASVSNNSLISIARLLKHCTLE------V--AGKGQFKD------EFVTAGGVPLSEI----SLN--  425 (481)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~------v--~~~~~~~~------a~vt~GGv~~~ei----~~~--  425 (481)
                      +|++++|++++...+.+  +.++.++..-++.+|.      +  ....||--      ...|.||+.+++-    |.+  
T Consensus       773 ELA~~~gid~~~L~aTV--~rYN~~~~~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~  850 (1167)
T PTZ00306        773 GLAKLIGCPVENLHRTL--ETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNS  850 (1167)
T ss_pred             HHHHHhCCCHHHHHHHH--HHHHHHHhcCCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCc
Confidence            88888899887665554  5666666543332221      0  02333322      4558999998852    111  


Q ss_pred             ---cccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          426 ---TMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       426 ---t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                         .-+.++|||||+|||+. .++|  +.||.++.+|+++||+||++||++++++.+
T Consensus       851 ~~~~~~~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~~  907 (1167)
T PTZ00306        851 VNIFEDRRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKKY  907 (1167)
T ss_pred             cccccCCceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCc
Confidence               11357999999999985 5555  668999999999999999999998866653

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.86  E-value=4.5e-20  Score=198.27  Aligned_cols=74  Identities=20%  Similarity=0.264  Sum_probs=54.1

Q ss_pred             cCeEEEcccCCCceeEEecCCCCCCC-CCcccccccCCCCeEEEEEEe-eccc--Ccc-hHHHHHHHHHHHHHHHHHhHH
Q 011610          396 HCTLEVAGKGQFKDEFVTAGGVPLSE-ISLNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       396 ~~~~~v~~~~~~~~a~vt~GGv~~~e-i~~~t~esk~~~gLy~~GE~l-dv~g--~~G-Gynl~~A~~sG~~AG~~aa~~  470 (481)
                      +-||+.....+-  ...|.||+.+++ -...+.+.++|||||+|||+. .+.|  +.| |.++.+|+++||+||++||+.
T Consensus       492 ~gPfYA~~~~p~--~~~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~  569 (584)
T PRK12835        492 KPPYYAFRIELG--DLGTSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV  569 (584)
T ss_pred             cCCeEEEEeccc--ccccCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence            344554443332  345899999987 333445688999999999986 4554  334 789999999999999999876


Q ss_pred             h
Q 011610          471 S  471 (481)
Q Consensus       471 ~  471 (481)
                      +
T Consensus       570 ~  570 (584)
T PRK12835        570 V  570 (584)
T ss_pred             h
Confidence            4

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.86  E-value=1.2e-19  Score=195.31  Aligned_cols=81  Identities=15%  Similarity=0.179  Sum_probs=59.8

Q ss_pred             hccCeEEEcccCCCceeEEecCCCCCCC-CCcccccccCCCCeEEEEEEe-eccc--Ccc-hHHHHHHHHHHHHHHHHHh
Q 011610          394 LKHCTLEVAGKGQFKDEFVTAGGVPLSE-ISLNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIG  468 (481)
Q Consensus       394 l~~~~~~v~~~~~~~~a~vt~GGv~~~e-i~~~t~esk~~~gLy~~GE~l-dv~g--~~G-Gynl~~A~~sG~~AG~~aa  468 (481)
                      +.+-||+.....+-  -..|.||+.+++ -.....+.++|||||+|||+. .+.|  +.| |.++.+|+++||+||++||
T Consensus       487 i~~~PfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa  564 (574)
T PRK12842        487 IGSGPFYAVKVIMG--DLGTFDGLRTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLA  564 (574)
T ss_pred             CCCCCEEEEEeccc--ccccCCCcCCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHH
Confidence            34456665554442  456899999986 222444688999999999976 4544  334 8899999999999999999


Q ss_pred             HHhhHhhh
Q 011610          469 KLSNDATL  476 (481)
Q Consensus       469 ~~~~~~~~  476 (481)
                      +.+..+.|
T Consensus       565 ~~~~~~~~  572 (574)
T PRK12842        565 GVAGGRKL  572 (574)
T ss_pred             hhhccccc
Confidence            88876655

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.86  E-value=8.3e-20  Score=196.44  Aligned_cols=188  Identities=22%  Similarity=0.257  Sum_probs=117.0

Q ss_pred             CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccC-----CCcc-hhHHh---hc
Q 011610           45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNG-----HCAD-KMILA---GH  114 (481)
Q Consensus        45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~-----~~~~-~~~~~---~~  114 (481)
                      ..++.++||+|||+|++|++||+.+++  .|++|+|||+. ..|.....++++.+-..+.     ...+ ...+.   ..
T Consensus        11 ~~~~~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~   88 (578)
T PRK12843         11 ERWDAEFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDA   88 (578)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHH
Confidence            446678999999999999999999999  79999999965 5566555555443211110     0011 11111   11


Q ss_pred             cC--CCChhchhhHHhcCChHHHHHHHHh-cCCcceeec--------------CCe---ee-------------------
Q 011610          115 YP--RGHKEFRGSFFSLHGPMDTMSWFSD-HGVELKTED--------------DGR---VF-------------------  155 (481)
Q Consensus       115 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~~~--------------~g~---~~-------------------  155 (481)
                      +.  ..+..+++.++..  ..+.++|+++ .|+.+....              .++   .+                   
T Consensus        89 ~~~~~~d~~lv~~~~~~--s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (578)
T PRK12843         89 LVGDRSPEELRDAFLAS--GPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIP  166 (578)
T ss_pred             hhCCCCcHHHHHHHHhc--cHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhccccc
Confidence            11  1233444443332  2367889986 676663210              000   00                   


Q ss_pred             ---------------------------------------------ecC---CChHHHHHHHHHHHHhCCCEEEcCceEEE
Q 011610          156 ---------------------------------------------PVS---DSSSSVIDCLLTEAKHRGVVLQTGKVVTT  187 (481)
Q Consensus       156 ---------------------------------------------p~~---~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~  187 (481)
                                                                   |..   .....++..|.+.+++.|++++++++|++
T Consensus       167 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~  246 (578)
T PRK12843        167 EFTVLGGMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRARGVRILTQTDVES  246 (578)
T ss_pred             cccccccccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence                                                         000   01345778889999999999999999999


Q ss_pred             EEecCCCCeEEEEEeecccCceEEEEc-CeEEEccCC--------------------------ChhHHHHHHHcCCCcc
Q 011610          188 ASSDNAGRKFLLKVEKRTMNLVECIEA-DYLLIASGS--------------------------SQQGHRLAAQLGHSIV  239 (481)
Q Consensus       188 i~~~~~~~~~~V~~~~~~~~~~~~i~a-d~VIlAtG~--------------------------~g~g~~la~~~G~~i~  239 (481)
                      +..++ +...+|.+..  .++...+.| +.||+|||+                          +|++..++.++|..+.
T Consensus       247 Li~~~-g~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~  322 (578)
T PRK12843        247 LETDH-GRVIGATVVQ--GGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYG  322 (578)
T ss_pred             EEeeC-CEEEEEEEec--CCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCcc
Confidence            98754 4555676653  222346776 789999994                          3567788888887764

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.86  E-value=1.1e-19  Score=194.13  Aligned_cols=74  Identities=20%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             hccCeEEEcccCCCceeEEecCCCCCCCCC-cccccccCCCCeEEEEEEe-eccc--Ccc-hHHHHHHHHHHHHHHHHHh
Q 011610          394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIG  468 (481)
Q Consensus       394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-dv~g--~~G-Gynl~~A~~sG~~AG~~aa  468 (481)
                      +.+-||+.....+  .-..|.||+.+++-- ...-+.++|||||+|||+. .+.|  +.| |.++.+|+++||+||++||
T Consensus       485 i~~gPfYA~~~~p--~~~~T~GGl~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa  562 (564)
T PRK12845        485 LDKGPFYAVKMVL--SDLGTCGGLRADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA  562 (564)
T ss_pred             cccCCEEEEEecc--ccceecCCeeECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence            3345566654433  235689999998632 2334578999999999986 4554  444 8999999999999999997


Q ss_pred             H
Q 011610          469 K  469 (481)
Q Consensus       469 ~  469 (481)
                      +
T Consensus       563 ~  563 (564)
T PRK12845        563 A  563 (564)
T ss_pred             c
Confidence            4

>PRK12839 hypothetical protein; Provisional

Probab=99.85  E-value=2e-19  Score=192.65  Aligned_cols=75  Identities=25%  Similarity=0.249  Sum_probs=55.2

Q ss_pred             hccCeEEEcccCCCceeEEecCCCCCCCCC-cccccccCCCCeEEEEEEe-ecccC---cchHHHHHHHHHHHHHHHHHh
Q 011610          394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDGV---TGGFNFQNAWSGGYIAGTSIG  468 (481)
Q Consensus       394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-dv~g~---~GGynl~~A~~sG~~AG~~aa  468 (481)
                      +.+-||+.....+-  ...|.||+.+++-- ..+-+.++|||||+|||+. .+.|.   .+|.++.+|+.+||+||++||
T Consensus       488 i~~gPfYA~~~~p~--~~~T~GGl~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA  565 (572)
T PRK12839        488 LEKGPFYAVKVVPG--SFGTFAGLVADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELA  565 (572)
T ss_pred             CCCCCeEEEEEecc--ccccCCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHH
Confidence            34456666554432  56699999998622 2334678999999999965 45552   468899999999999999997


Q ss_pred             HH
Q 011610          469 KL  470 (481)
Q Consensus       469 ~~  470 (481)
                      +.
T Consensus       566 ~~  567 (572)
T PRK12839        566 GS  567 (572)
T ss_pred             hc
Confidence            54

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.85  E-value=1.7e-19  Score=194.20  Aligned_cols=78  Identities=24%  Similarity=0.261  Sum_probs=56.9

Q ss_pred             ccCeEEEcccCCCceeEEecCCCCCCC-CCcccccccCCCCeEEEEEEe-ecccC---cchHHHHHHHHHHHHHHHHHhH
Q 011610          395 KHCTLEVAGKGQFKDEFVTAGGVPLSE-ISLNTMESKIHPRLFFAGEVL-NVDGV---TGGFNFQNAWSGGYIAGTSIGK  469 (481)
Q Consensus       395 ~~~~~~v~~~~~~~~a~vt~GGv~~~e-i~~~t~esk~~~gLy~~GE~l-dv~g~---~GGynl~~A~~sG~~AG~~aa~  469 (481)
                      .+-||+.....+.  ...|.||+.+++ -...+-+.++|||||+|||+. .+.|.   .||.++.+|+++||+||++||+
T Consensus       492 ~~gPfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~  569 (581)
T PRK06134        492 EHGPFYAVKVLPG--CLGTFAGLKTDADARVLDQAGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAG  569 (581)
T ss_pred             CCCCeEEEEeecc--ccccCCCccCCCCCceECCCCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhh
Confidence            3455655544433  556999999986 222444688999999999965 45442   3688999999999999999987


Q ss_pred             HhhHh
Q 011610          470 LSNDA  474 (481)
Q Consensus       470 ~~~~~  474 (481)
                      ...+.
T Consensus       570 ~~~~~  574 (581)
T PRK06134        570 ASGYE  574 (581)
T ss_pred             cCCcc
Confidence            76443

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.83  E-value=1.8e-19  Score=193.06  Aligned_cols=73  Identities=25%  Similarity=0.281  Sum_probs=53.4

Q ss_pred             cCeEEEcccCCCceeEEecCCCCCCCC-CcccccccCCCCeEEEEEEe-eccc--Ccc-hHHHHHHHHHHHHHHHHHhHH
Q 011610          396 HCTLEVAGKGQFKDEFVTAGGVPLSEI-SLNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       396 ~~~~~v~~~~~~~~a~vt~GGv~~~ei-~~~t~esk~~~gLy~~GE~l-dv~g--~~G-Gynl~~A~~sG~~AG~~aa~~  470 (481)
                      +-||+.....+-  ...|.||+.+++- ...+.+.++|||||+|||+. .+.|  +.| |.++.+|+++||+||++||+.
T Consensus       479 ~~PfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~  556 (557)
T PRK07843        479 HAPFYAAKMVPG--DLGTKGGLRTDVRGRVLRDDGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ  556 (557)
T ss_pred             CCCeEEEEEecc--cceeCCCceECCCceEECCCCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence            345554443332  3568999999862 22344678999999999986 5655  445 889999999999999999754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.82  E-value=1.9e-19  Score=189.35  Aligned_cols=65  Identities=25%  Similarity=0.427  Sum_probs=58.4

Q ss_pred             CCceeEEecCCCCC--CCCCc----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          406 QFKDEFVTAGGVPL--SEISL----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       406 ~~~~a~vt~GGv~~--~ei~~----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                      +++.|+++++|+.+  +.+||    .|||+|.+|||||||   |++|.+| |+  .||++|.+||.+|+..++.+++
T Consensus       325 Gle~a~~~r~gy~~e~~~i~p~~l~~~le~k~~~gLf~AG---qi~Gt~G-y~--eAaa~Gl~Ag~naa~~~~~~~~  395 (617)
T TIGR00136       325 GLENAEILRPGYAIEYDFFDPRQLKPTLETKLIQGLFFAG---QINGTTG-YE--EAAAQGLMAGINAALKLQNKEP  395 (617)
T ss_pred             CcccceEeccccceEEeEEChhhCchhheeCCCCCeEEcc---ccCCcch-HH--HHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999887  88999    999999999999999   6999555 99  7888999999999999877654

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.82  E-value=3.8e-18  Score=171.67  Aligned_cols=343  Identities=16%  Similarity=0.239  Sum_probs=203.5

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCCcchhHH-----hhccCCCChhchh
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCADKMIL-----AGHYPRGHKEFRG  124 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~~~~~~~-----~~~~~~~~~~~~~  124 (481)
                      ||+|||+|.|||++|+.|++   ..+|+||-|...+.  +.++-||-...+......+ ...     +..+.. +...+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~---~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~-~Hv~DTL~AG~glc-D~~aV~   83 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP---SFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPE-LHVADTLAAGAGLC-DEEAVE   83 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC---CCcEEEEeCCCCCCccchhhcCceEeeeCCCCCHH-HHHHHHHHhcCCCC-cHHHHH
Confidence            89999999999999999997   48999999876552  3333344333333321111 111     111221 222222


Q ss_pred             hHHhcCChHHHHHHHHhcCCcceeecCCee-e------------e-cCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEE
Q 011610          125 SFFSLHGPMDTMSWFSDHGVELKTEDDGRV-F------------P-VSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTAS  189 (481)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-~------------p-~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~  189 (481)
                      .+..  .....++|+..+|+++..+..+.+ +            . .+.....++..|.+.+++ .+++++.++.+.+|.
T Consensus        84 ~iv~--~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li  161 (518)
T COG0029          84 FIVS--EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLI  161 (518)
T ss_pred             HHHH--hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhh
Confidence            2211  235678899999999987664421 1            1 123467889999999876 799999999999998


Q ss_pred             ecCCCCeE-EEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccc
Q 011610          190 SDNAGRKF-LLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQ  254 (481)
Q Consensus       190 ~~~~~~~~-~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~  254 (481)
                      .++ +..+ +|.+.+. .+.-..++|+.||+|||+              .|+|..||.+.|..+..+  .+++|...--.
T Consensus       162 ~~~-~~~~~Gv~~~~~-~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl--EFvQFHPT~l~  237 (518)
T COG0029         162 IED-GIGVAGVLVLNR-NGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL--EFVQFHPTALY  237 (518)
T ss_pred             hcC-CceEeEEEEecC-CCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc--cceeeccceec
Confidence            876 4355 7777641 112468999999999994              577889999999988654  34444433211


Q ss_pred             cccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccc---h-hhcccchhhHHHhHccCceeEEEEecCCCCCH
Q 011610          255 LTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSG---P-VILRLSAWGARYLFSSCYKGMLTVDFVPDLHI  330 (481)
Q Consensus       255 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG---~-~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~  330 (481)
                      ..   +-+.  .-++--+.|  .+..+....||.+.-+|.--|   | -|  ++|.|..++.+.+.+  ++||.-|-...
T Consensus       238 ~~---~~~~--~LiSEAVRG--EGA~L~~~~GeRFm~~~~p~~ELAPRDV--VARAI~~e~~~~g~~--V~LD~s~~~~~  306 (518)
T COG0029         238 IP---QRRA--FLISEAVRG--EGAILVNEDGERFMPDYHPRGELAPRDV--VARAIDAEMKRGGAD--VFLDISHIPGD  306 (518)
T ss_pred             CC---CCcc--ceeehhhhc--CccEEECCCCCccccCCCCccccchHHH--HHHHHHHHHHhcCCe--EEEeccCCCch
Confidence            11   0000  001100011  012233344554443332101   1 00  123344455554433  55665443221


Q ss_pred             HHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCcee
Q 011610          331 EDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDE  410 (481)
Q Consensus       331 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a  410 (481)
                           ++.+   .+|                 .+...|...|||+-                   +-|++|...     |
T Consensus       307 -----~~~~---rFP-----------------~I~~~c~~~GiD~~-------------------r~~IPV~Pa-----a  337 (518)
T COG0029         307 -----FFER---RFP-----------------TIYAACLKAGIDPT-------------------REPIPVVPA-----A  337 (518)
T ss_pred             -----hhhh---hCc-----------------HHHHHHHHcCCCcc-------------------cCccCccch-----h
Confidence                 1111   111                 14456677899875                   333444444     5


Q ss_pred             EEecCCCCCCCCCcccccccCCCCeEEEEEEee--ccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011610          411 FVTAGGVPLSEISLNTMESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       411 ~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ld--v~g--~~GGynl~~A~~sG~~AG~~aa~~  470 (481)
                      ..|+|||.+|...     -+.+||||++||+..  ++|  +.--..|.-|..+|..|+++++..
T Consensus       338 HY~mGGI~vD~~G-----rTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~  396 (518)
T COG0029         338 HYTMGGIAVDANG-----RTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGR  396 (518)
T ss_pred             heecccEEECCCC-----cccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence            5799999997443     468899999999874  566  445567899999999999999764

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.79  E-value=3.4e-17  Score=175.77  Aligned_cols=340  Identities=15%  Similarity=0.175  Sum_probs=187.7

Q ss_pred             HHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCcee-eccCCCcc-hhHHhhc-----cCCCChhchhhHHhcCChHH
Q 011610           63 VYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCN-VTNGHCAD-KMILAGH-----YPRGHKEFRGSFFSLHGPMD  134 (481)
Q Consensus        63 l~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n-~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~l~~~~~~~  134 (481)
                      |+||+++++  .|.+|+||||..+.+ ...++++|-.. .......+ .+.....     -...++.+++.+..  ...+
T Consensus         1 l~AAl~aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~--~a~~   76 (570)
T PRK05675          1 MRAALQLAQ--GGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCS--VGPE   76 (570)
T ss_pred             ChhHHhHHh--cCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHH
Confidence            579999999  799999999876543 22333333211 11111112 1111111     11123344433322  2357


Q ss_pred             HHHHHHhcCCcceeecCCeeee----------------------cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610          135 TMSWFSDHGVELKTEDDGRVFP----------------------VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN  192 (481)
Q Consensus       135 ~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~  192 (481)
                      .++|+.++|+++....+|.+..                      .......++..|.+.+.+.||+++.++.+++|..++
T Consensus        77 ~i~~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~  156 (570)
T PRK05675         77 AVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQ  156 (570)
T ss_pred             HHHHHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcC
Confidence            7899999999986543332211                      112356788999999999999999999999998753


Q ss_pred             CCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccc
Q 011610          193 AGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTEL  258 (481)
Q Consensus       193 ~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l  258 (481)
                      ++...+|...+..++.-..+.|+.||+|||+              +|+|+.||.++|..+..+.-  +++...  .+.. 
T Consensus       157 ~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~--~q~~Pt--~~~~-  231 (570)
T PRK05675        157 DGAVVGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEM--WQFHPT--GIAG-  231 (570)
T ss_pred             CCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccc--eeeecc--eeCC-
Confidence            1355677664322333457899999999994              57899999999998865442  222210  0000 


Q ss_pred             cCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccC------ceeEEEEecCCC
Q 011610          259 SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSC------YKGMLTVDFVPD  327 (481)
Q Consensus       259 ~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~------~~~~~~~d~~p~  327 (481)
                      .+.-+. ..+.  ..+    ..++...|+.++.+|.     +....+  +++.+..++.+..      ..+.+.++.+  
T Consensus       232 ~~~l~~-e~~r--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~ei~~~~g~~~~~~~v~ld~~~l--  300 (570)
T PRK05675        232 AGVLVT-EGCR--GEG----GYLINKHGERFMERYAPNAKDLAGRDV--VARSMVKEILAGNGCGPNKDHVLLKLDHL--  300 (570)
T ss_pred             CceEee-cccc--CCC----cEEECCCCCCcccccCcccccccchhH--HHHHHHHHHHhcCCccCCCCEEEEEcCCC--
Confidence            111110 0000  000    1122334555444432     111111  2333334443321      1133333333  


Q ss_pred             CCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCC
Q 011610          328 LHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQ  406 (481)
Q Consensus       328 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~  406 (481)
                       .++.+++.+       +               . +. .+++. .++++.                   .-|++|...  
T Consensus       301 -~~~~l~~~~-------~---------------~-~~-~~~~~~~~~d~~-------------------~~~i~v~P~--  334 (570)
T PRK05675        301 -GEEVLHSRL-------P---------------G-IC-ELSKTFAHVDPV-------------------VAPIPVVPT--  334 (570)
T ss_pred             -CHHHHHHhc-------c---------------H-HH-HHHHHhcCCCcC-------------------CCceEeehh--
Confidence             222222111       1               0 00 01111 234331                   123555443  


Q ss_pred             CceeEEecCCCCCCCCCccccc------ccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          407 FKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       407 ~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                         +..|+|||.+++- -.+..      .+.|||||+|||+.  .++|  +.||..|.+|+++|++||++|++++.
T Consensus       335 ---~h~t~GGi~vd~~-g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~  406 (570)
T PRK05675        335 ---CHYMMGGVATNIH-GQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK  406 (570)
T ss_pred             ---HhccCCCcccCCC-CeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence               5679999988743 34431      25799999999986  5788  77999999999999999999988753

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.78  E-value=1.4e-17  Score=172.96  Aligned_cols=183  Identities=24%  Similarity=0.394  Sum_probs=113.3

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCC------cc-hhHHhhc----cC-CC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHC------AD-KMILAGH----YP-RG  118 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~------~~-~~~~~~~----~~-~~  118 (481)
                      ||+|||+|.||++||+.|++  .|.+|+||||... +.....++++ .+......      .+ ...+...    .. ..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~~s~g~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   77 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSAFSSGG-FDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLN   77 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGGGTCSE-EEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S
T ss_pred             CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccccccCc-eeeecccccccccccccccccceeeeccccccc
Confidence            89999999999999999999  7999999997744 4433333322 22222111      11 2222211    11 11


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceeecCC--------------eeee-cCC-------ChHHHHHHHHHHHHhCC
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG--------------RVFP-VSD-------SSSSVIDCLLTEAKHRG  176 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g--------------~~~p-~~~-------~a~~~~~~l~~~~~~~G  176 (481)
                      ++.+.+.+..  ...+..+|++++|+++.....+              +..+ ..+       ....++..|.+.++++|
T Consensus        78 ~~~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~g  155 (417)
T PF00890_consen   78 DPDLVRAFVE--NSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAG  155 (417)
T ss_dssp             -HHHHHHHHH--HHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhhhhh--cccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcC
Confidence            3333333222  3457789999999887762111              1111 122       35778899999999999


Q ss_pred             CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC------------------------ChhHHHHHH
Q 011610          177 VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS------------------------SQQGHRLAA  232 (481)
Q Consensus       177 v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~------------------------~g~g~~la~  232 (481)
                      ++|++++++++|..++ +...+|...+..+++...+.|+.||+|||+                        +|++..++.
T Consensus       156 v~i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~ma~  234 (417)
T PF00890_consen  156 VDIRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAMAL  234 (417)
T ss_dssp             EEEEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHHHH
T ss_pred             eeeeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhhhh
Confidence            9999999999999976 555677777433444568999999999995                        345788888


Q ss_pred             HcCCCccc
Q 011610          233 QLGHSIVD  240 (481)
Q Consensus       233 ~~G~~i~~  240 (481)
                      ++|..+..
T Consensus       235 ~aGa~~~~  242 (417)
T PF00890_consen  235 RAGAALSN  242 (417)
T ss_dssp             HTTCCEES
T ss_pred             ccCccccC
Confidence            88888655

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=99.77  E-value=2e-16  Score=169.79  Aligned_cols=332  Identities=14%  Similarity=0.150  Sum_probs=181.6

Q ss_pred             CCCcEEEEeCCCCCC-ceEEecCCcee-eccCCCcchhHHhhcc-----CCCChhchhhHHhcCChHHHHHHHHhcCCcc
Q 011610           74 PKLNVVIIEKGKPLS-KVKISGGGRCN-VTNGHCADKMILAGHY-----PRGHKEFRGSFFSLHGPMDTMSWFSDHGVEL  146 (481)
Q Consensus        74 ~g~~V~llE~~~~g~-k~~~sG~g~~n-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~  146 (481)
                      .|++|+|+||..+.+ ....+++|-.. .++....+++.++...     ...++.+++.+..  ...+.++|+.++|+++
T Consensus         4 ~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~--~s~~~i~~L~~~Gv~f   81 (565)
T TIGR01816         4 GGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCK--QAPEAVLELEHMGMPF   81 (565)
T ss_pred             CCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHhcCccc
Confidence            689999999875543 33333333221 1111111121222111     1123344433322  2357789999999998


Q ss_pred             eeecCCeee----------------------ecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          147 KTEDDGRVF----------------------PVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       147 ~~~~~g~~~----------------------p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                      .....+.+.                      +.......++..|.+.+++.||+|+.++.+++|..++ +...+|...+.
T Consensus        82 ~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g~v~Ga~~~~~  160 (565)
T TIGR01816        82 SRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMED-GECRGVIAYCL  160 (565)
T ss_pred             ccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-CEEEEEEEEEc
Confidence            653333221                      1112346788999999999999999999999998765 45567665321


Q ss_pred             ccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEE
Q 011610          205 TMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKL  270 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~  270 (481)
                      .++....+.|+.||+|||+              +|+|+.++.++|..+..+.-  +++...  .+.. .+.-+. ..++ 
T Consensus       161 ~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~--~q~~pt--~~~~-~~~l~~-e~~r-  233 (565)
T TIGR01816       161 ETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEF--VQFHPT--GIAG-AGCLIT-EGCR-  233 (565)
T ss_pred             CCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcc--eEEccC--cccC-CceEEe-cccc-
Confidence            2233457899999999995              57889999999999865432  222211  0000 111100 0000 


Q ss_pred             EecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc----eeEEEEecCCCCCHHHHHHHHHHHH
Q 011610          271 KLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY----KGMLTVDFVPDLHIEDMQSILSQHK  341 (481)
Q Consensus       271 ~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~----~~~~~~d~~p~~~~~~l~~~l~~~~  341 (481)
                       ..+    ...+...|+.++.+|.     +....+  +++.+..++.+...    ...+.+|+- .++.+.|.+.+..  
T Consensus       234 -~~g----~~lvn~~G~RF~~~y~~~~~el~~rd~--v~~ai~~e~~~~~g~~~~~~~v~ld~~-~~~~~~l~~~~~~--  303 (565)
T TIGR01816       234 -GEG----GILINANGERFMERYAPTAKDLASRDV--VSRSMTLEIREGRGVGPNKDHVYLDLD-HLGPEVLEGRLPG--  303 (565)
T ss_pred             -CCc----eEEECCCCCCCccccCccccccCchhH--HHHHHHHHHHhcCCCCCCCCeEEEEcc-CCCHHHHHHHhhh--
Confidence             000    0122334554444332     111111  22333333322211    113445542 2333333222110  


Q ss_pred             HhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCC
Q 011610          342 IRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLS  420 (481)
Q Consensus       342 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~  420 (481)
                                            +..++.. .|+|+.+                   -|+++...     +..|+|||.++
T Consensus       304 ----------------------~~~~~~~~~G~D~~~-------------------~~i~v~p~-----~h~t~GGi~id  337 (565)
T TIGR01816       304 ----------------------ISETARTFAGVDPVK-------------------DPIPVLPT-----VHYNMGGIPTN  337 (565)
T ss_pred             ----------------------HHHHHHHHcCCCCCC-------------------CcEEeeee-----eeeecCCceeC
Confidence                                  1112222 5666532                   13455433     67899999987


Q ss_pred             CCCcccc-----cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          421 EISLNTM-----ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       421 ei~~~t~-----esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      +- ..+.     ..+.|||||+|||+.  .++|  +.||..|.+|+++|++||++||+++.
T Consensus       338 ~~-g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~  397 (565)
T TIGR01816       338 YH-GQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK  397 (565)
T ss_pred             CC-ceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence            42 2332     226899999999986  5676  67899999999999999999998764

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.73  E-value=1.7e-17  Score=157.49  Aligned_cols=186  Identities=21%  Similarity=0.322  Sum_probs=110.0

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCC-ceEEe-c-CCceeeccC--CCcc-hhHHhhc-----cCCCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS-KVKIS-G-GGRCNVTNG--HCAD-KMILAGH-----YPRGH  119 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~-k~~~s-G-~g~~n~~~~--~~~~-~~~~~~~-----~~~~~  119 (481)
                      .|+|||+|.|||+|+..+-.  .+-.|+|+|+. .+|+ ++.++ | ||.|.-+..  ...| +.-|...     -..+.
T Consensus        11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~   88 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGV   88 (477)
T ss_pred             cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCc
Confidence            69999999999999999988  45569999965 6664 34332 2 333321111  1111 1111111     11222


Q ss_pred             hhchhhHHhcCChHHHHHHHHh-cCCccee--ecCCeeeecCC-------ChHHHHHHHHHHHHhC------CCEEEcCc
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSD-HGVELKT--EDDGRVFPVSD-------SSSSVIDCLLTEAKHR------GVVLQTGK  183 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~--~~~g~~~p~~~-------~a~~~~~~l~~~~~~~------Gv~i~~~~  183 (481)
                      +.++..+ .. ...+.++|++. .++.+..  ...|.-.|++.       ..-.++.+|...+++.      -++|..++
T Consensus        89 ~eLm~~L-a~-~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~ns  166 (477)
T KOG2404|consen   89 PELMEKL-AA-NSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNS  166 (477)
T ss_pred             HHHHHHH-Hh-cCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcc
Confidence            3333222 11 23466777765 4444331  22333333322       1345566666555432      37899999


Q ss_pred             eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC---------------------------ChhHHHHHHHcCC
Q 011610          184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAAQLGH  236 (481)
Q Consensus       184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~g~g~~la~~~G~  236 (481)
                      +|++|...+ +...+|...+ .++....+.++.||+|||+                           +|+|.+|..++|.
T Consensus       167 kvv~il~n~-gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~l~klga  244 (477)
T KOG2404|consen  167 KVVDILRNN-GKVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKMLMKLGA  244 (477)
T ss_pred             eeeeeecCC-CeEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHHHHHhCc
Confidence            999999665 5666777654 4455567899999999995                           4667888888887


Q ss_pred             CcccCCC
Q 011610          237 SIVDPVP  243 (481)
Q Consensus       237 ~i~~~~p  243 (481)
                      .++.+..
T Consensus       245 ~liDmd~  251 (477)
T KOG2404|consen  245 SLIDMDQ  251 (477)
T ss_pred             cccccce
Confidence            7665543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.70  E-value=1.3e-16  Score=168.53  Aligned_cols=146  Identities=17%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC--CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      .+|||+|||||+||+.||+.+++  .|.+|+|+|+.  .+|       ...||-.-....            ...+.+. 
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG-------~m~CnpsiGG~a------------kg~lvrE-   60 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIG-------QMSCNPAIGGIA------------KGHLVRE-   60 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHH--cCCcEEEEeccccccc-------ccCCccccccch------------hhHHHHH-
Confidence            46999999999999999999999  79999999954  444       234542211100            0011111 


Q ss_pred             HhcCChHHHHHHHHhcCCcceeec--CC-eee-ec-CCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEE
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTED--DG-RVF-PV-SDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~--~g-~~~-p~-~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                      +...+ ..+..+.+..++.+....  .| .++ |. ..+...+...+.+.+.+. |++++ +.+|.++..++ +...+|.
T Consensus        61 idalG-g~~g~~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~  137 (618)
T PRK05192         61 IDALG-GEMGKAIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVV  137 (618)
T ss_pred             HHhcC-CHHHHHHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEE
Confidence            11111 012223334444332211  01 111 11 123455667777777755 78885 66799988765 4556788


Q ss_pred             EeecccCceEEEEcCeEEEccCCC
Q 011610          201 VEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       201 ~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      +.+     +..+.|+.||+|||.+
T Consensus       138 t~d-----G~~I~Ak~VIlATGTF  156 (618)
T PRK05192        138 TQD-----GLEFRAKAVVLTTGTF  156 (618)
T ss_pred             ECC-----CCEEECCEEEEeeCcc
Confidence            776     6789999999999964

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=99.70  E-value=1.3e-15  Score=154.34  Aligned_cols=67  Identities=24%  Similarity=0.370  Sum_probs=59.8

Q ss_pred             cCCCceeEEecCCC-------CCCCCCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          404 KGQFKDEFVTAGGV-------PLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       404 ~~~~~~a~vt~GGv-------~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                      ..++++|+++++|+       +..++.+.|||+|.+||||||||+.+++|+|      |||+||++||.+|+.++..+++
T Consensus       295 Ipgle~a~~~r~G~~~~~~~i~~p~~l~~~l~~k~~~~l~~AGqi~g~~Gy~------ea~a~G~~Ag~n~~~~~~g~~~  368 (436)
T PRK05335        295 IPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYV------ESAASGLLAGINAARLALGKEP  368 (436)
T ss_pred             ccchhceEEEeceEEeeccccCChhhCchhccccCCCCEEeeeeecCchHHH------HHHHHHHHHHHHHHHHhcCCCC
Confidence            45889999999999       7666677899999999999999999999888      9999999999999998876554

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=6.4e-16  Score=156.85  Aligned_cols=67  Identities=25%  Similarity=0.377  Sum_probs=56.2

Q ss_pred             cCCCceeEEecCC--CCCCCCCc----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          404 KGQFKDEFVTAGG--VPLSEISL----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       404 ~~~~~~a~vt~GG--v~~~ei~~----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                      ..|++.|.+++-|  |.-|-++|    .|+|+|+++|||+||   .++|.|| |.-..|  .|.+||.+||.++..+.+
T Consensus       325 ipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AG---QINGTtG-YEEAAa--QGliAGiNAal~~~~~~p  397 (621)
T COG0445         325 IPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAG---QINGTTG-YEEAAA--QGLIAGINAALKVQGKEP  397 (621)
T ss_pred             CcccccceeeccceeeeecccChhhcccchhhceecceEEcc---cccCCch-hHHHHh--hhHHHHHHHHHHhcCCCC
Confidence            5688899999887  44444555    589999999999999   8999888 998888  999999999988877654

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.60  E-value=4.7e-14  Score=141.91  Aligned_cols=142  Identities=19%  Similarity=0.205  Sum_probs=84.6

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEe-C-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-K-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ||+|||||.||+.||+.+|+  .|.+|+|+- + +.++       .-.||-.-...            ....+.+. +..
T Consensus         1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~-------~~~Cnpsigg~------------~kg~L~~E-ida   58 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIG-------EMSCNPSIGGI------------AKGHLVRE-IDA   58 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT---------SSSSEEEST------------THHHHHHH-HHH
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccc-------cccchhhhccc------------cccchhHH-Hhh
Confidence            89999999999999999999  799999994 3 3444       12343221110            11122211 233


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeee-----cCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFP-----VSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p-----~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                      .+ ..+....+..++.+......+-++     ..-+...+...+.+.++. .+++|+ +.+|++|..++ +...+|.+.+
T Consensus        59 lg-g~m~~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~~v~GV~~~~  135 (392)
T PF01134_consen   59 LG-GLMGRAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN-GKVKGVVTKD  135 (392)
T ss_dssp             TT--SHHHHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-TEEEEEEETT
T ss_pred             hh-hHHHHHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC-CeEEEEEeCC
Confidence            33 234445555555444432211111     112345566677777776 578885 67999999876 5667899886


Q ss_pred             cccCceEEEEcCeEEEccCC
Q 011610          204 RTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~  223 (481)
                           +..+.||.||+|||.
T Consensus       136 -----g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen  136 -----GEEIEADAVVLATGT  150 (392)
T ss_dssp             -----SEEEEECEEEE-TTT
T ss_pred             -----CCEEecCEEEEeccc
Confidence                 789999999999996

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.56  E-value=9.2e-13  Score=135.87  Aligned_cols=166  Identities=24%  Similarity=0.308  Sum_probs=99.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ++|||+||||||||++||+.|++  .|++|+|+|+ +.+|.+....+..     ...     .+..-.......+.    
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~~~~~-----~~~-----~l~~l~~~~~~~i~----   65 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCCGGGL-----SPR-----ALEELIPDFDEEIE----   65 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCcccccee-----chh-----hHHHhCCCcchhhh----
Confidence            57999999999999999999999  7899999995 5777544331110     000     00011110000000    


Q ss_pred             hcCChHHHHHHHHhcCCcceee---cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          128 SLHGPMDTMSWFSDHGVELKTE---DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~---~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                      .......+  ++.  +-.....   ..++..    ....+.+.|.+.+++.|++++.+++|.++..++ ++.+.+...+ 
T Consensus        66 ~~v~~~~~--~~~--~~~~~~~~~~~~~y~v----~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~-  135 (396)
T COG0644          66 RKVTGARI--YFP--GEKVAIEVPVGEGYIV----DRAKFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAG-  135 (396)
T ss_pred             eeeeeeEE--Eec--CCceEEecCCCceEEE----EhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcC-
Confidence            00000000  000  1111111   112222    345667788999999999999999999999876 3444333332 


Q ss_pred             ccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcccCCCceeEee
Q 011610          205 TMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFK  249 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~~~p~l~~~~  249 (481)
                          ..+++|+.||.|+|..+   .+++++|..  ...|..+.+.
T Consensus       136 ----~~e~~a~~vI~AdG~~s---~l~~~lg~~--~~~~~~~~~~  171 (396)
T COG0644         136 ----DDEVRAKVVIDADGVNS---ALARKLGLK--DRKPEDYAIG  171 (396)
T ss_pred             ----CEEEEcCEEEECCCcch---HHHHHhCCC--CCChhheeEE
Confidence                36899999999999875   678888887  3444444433

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=99.53  E-value=4.2e-12  Score=126.95  Aligned_cols=287  Identities=17%  Similarity=0.180  Sum_probs=151.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh-H-HHHHHHcC
Q 011610          158 SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ-G-HRLAAQLG  235 (481)
Q Consensus       158 ~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~-g-~~la~~~G  235 (481)
                      ++....+++.+.+.++++|++|+++++|.+|+..+ +....|++++     +.++.+|+||+|.|.++. + ..+.+++|
T Consensus       169 TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~-----g~~i~~~~vvlA~Grsg~dw~~~l~~K~G  242 (486)
T COG2509         169 TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTK-----GEEIEADYVVLAPGRSGRDWFEMLHKKLG  242 (486)
T ss_pred             ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccC-----CcEEecCEEEEccCcchHHHHHHHHHhcC
Confidence            45678899999999999999999999999999876 4456788876     789999999999996653 3 34567789


Q ss_pred             CCcccCCCceeEeeeCcc--ccccccCceeccEEEEEEecCccCCCCccc----eecCeEEEeccccchhhcccchhhHH
Q 011610          236 HSIVDPVPSLFTFKIADS--QLTELSGVSFPKVVAKLKLENVQRSSPYLT----QVGPMLVTHWGLSGPVILRLSAWGAR  309 (481)
Q Consensus       236 ~~i~~~~p~l~~~~~~~~--~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~----~~Ge~lft~~glsG~~il~lS~~~~~  309 (481)
                      +.+. ..|.-+.++++-+  .+.+..-.-.. ..+..+..  +.+..+..    -.|.+.-..|. -|..+-+--++..+
T Consensus       243 v~~~-~~p~dIGVRvE~p~~vmd~~~~~~~~-~k~~~~t~--k~~~~VrtFCmcP~G~VV~e~~e-~g~~~vNG~S~~~r  317 (486)
T COG2509         243 VKMR-AKPFDIGVRVEHPQSVMDPHTRLGAA-PKFLYYTK--KYGDGVRTFCMCPGGEVVAENYE-DGFVVVNGHSYYAR  317 (486)
T ss_pred             cccc-cCCeeEEEEEecchHhhCcccccccc-ceeEEEec--cCCCeEEEEEECCCCeEEeeecc-CceEEEcccchhcc
Confidence            9874 4477666666533  33332211110 00111110  00001111    12444433332 12222222222233


Q ss_pred             HhHccCceeEEEEecC-CCCCHHHHHHHHHHHHHhchh-----hhhhhhCCCccchhHHHHHHHHHhcCCCCC---Cccc
Q 011610          310 YLFSSCYKGMLTVDFV-PDLHIEDMQSILSQHKIRFAK-----QKVLNSCPPEFCLVKRFWKYILGREGLSGD---TLWA  380 (481)
Q Consensus       310 ~~~~~~~~~~~~~d~~-p~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~  380 (481)
                      .-.+.+--.-+.+++- |..+.-++...+.+..-....     |.+-+++.++  -+  .|..+ .+..+.|.   .+..
T Consensus       318 ~s~NtNfAllV~i~~tep~~~~~ey~r~ia~lA~~lgGg~~i~Q~~gDf~~gR--rS--t~~ri-~~~~v~PTlk~v~pg  392 (486)
T COG2509         318 KSENTNFALLVTIEFTEPFEDGIEYGRSIARLATTLGGGKAIIQRVGDFLKGR--RS--TWSRI-GRVFVEPTLKPVTPG  392 (486)
T ss_pred             cccCcceEEEEeccccCCCCchHHHHHHHHHHHHHhcCCcchHHHhhHHHcCC--cC--hHHHh-hcccccccccccccC
Confidence            3333332223333332 333444555555543332221     3333333331  00  01111 11111121   1111


Q ss_pred             c----CCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCC------CCCcccccccCCCCeEEEEEEeecccCcch
Q 011610          381 S----VSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLS------EISLNTMESKIHPRLFFAGEVLNVDGVTGG  450 (481)
Q Consensus       381 ~----l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~------ei~~~t~esk~~~gLy~~GE~ldv~g~~GG  450 (481)
                      +    |..--...|.+.|.++.=.+.|....+.-   .-||.++      ++|..  +|+.++|||.+|   |-.|.+||
T Consensus       393 Dls~~lP~~v~~~iiE~le~ldk~ipG~as~dtl---LygvE~k~ys~ri~~d~~--~~t~i~gLy~aG---dGAG~arg  464 (486)
T COG2509         393 DLSLALPDRVVEDLIEALENLDKVIPGVASDDTL---LYGVETKFYSVRIKVDED--LSTSIKGLYPAG---DGAGLARG  464 (486)
T ss_pred             chhhhCCHHHHHHHHHHHHHhhccCCCcccccce---eeeeeeeeeeeeEeeccc--ceeeecceEEcc---ccccccch
Confidence            1    22344455666666665555454333211   1122221      23322  789999999999   88899998


Q ss_pred             HHHHHHHHHHHHHHHHHhHH
Q 011610          451 FNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       451 ynl~~A~~sG~~AG~~aa~~  470 (481)
                        ++-|-++|..|++.+++.
T Consensus       465 --I~~Aaa~Gi~~A~~i~~k  482 (486)
T COG2509         465 --IVSAAADGIKAAEGIARK  482 (486)
T ss_pred             --hHHHhhhhHHHHHHHHHH
Confidence              445556999999998764

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.9e-13  Score=136.11  Aligned_cols=100  Identities=24%  Similarity=0.355  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHhcCCCCC-CccccCC----HHHHHHHHHHhccCeEEEcccCCCceeEEe--cCCCCCCCCCc----cccc
Q 011610          360 VKRFWKYILGREGLSGD-TLWASVS----NNSLISIARLLKHCTLEVAGKGQFKDEFVT--AGGVPLSEISL----NTME  428 (481)
Q Consensus       360 ~~~~~~~~~~~~~~~~~-~~~~~l~----~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt--~GGv~~~ei~~----~t~e  428 (481)
                      |++.-+.|++..|+|.+ ...+.+|    .+.-.+|+..+          .|.+.+.+-  +-||..|-+||    .|+|
T Consensus       315 p~k~HqiwLEpEGlDs~~iYpqG~S~tlpee~Q~~lir~I----------pGLEn~~i~qP~YgVeYDyv~prQlk~sLe  384 (679)
T KOG2311|consen  315 PDKSHQIWLEPEGLDSDLIYPQGLSNTLPEELQLQLIRSI----------PGLENAEILQPGYGVEYDYVDPRQLKPSLE  384 (679)
T ss_pred             ccccceeeecCcCCCCCcccccccccCCCHHHHHHHHHhc----------cCcccceeecccccceecccChHHcchhhh
Confidence            44433456666777743 2334444    33334454433          344555554  34788888888    6889


Q ss_pred             ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhh
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDAT  475 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~  475 (481)
                      -|+|+||||||   .++|.|| |.-..|  .|.+||.+|+..+..+.
T Consensus       385 TkkV~GLF~AG---QINGTTG-YEEAAA--QGIiAGiNA~~~a~~~~  425 (679)
T KOG2311|consen  385 TKKVQGLFFAG---QINGTTG-YEEAAA--QGIIAGINASLRASGKP  425 (679)
T ss_pred             hhhccceEEee---eecCccc-hHHHHh--hhhHhhhhhhhhhcCCC
Confidence            99999999999   8999998 988887  99999999997765543

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.1e-12  Score=129.23  Aligned_cols=113  Identities=27%  Similarity=0.417  Sum_probs=79.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      +.+||+||||||+||+||+++++  .+++ ++|+|+..+|        |..+.+. .       ...|+..         
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~g--------g~~~~~~-~-------venypg~---------   54 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPG--------GQLTKTT-D-------VENYPGF---------   54 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcC--------Cccccce-e-------ecCCCCC---------
Confidence            46999999999999999999999  7888 7777777666        2221111 0       0112111         


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                                                  |.......+.+.+.+.+...|+++.. ..|.+++..+  +.|.|++++    
T Consensus        55 ----------------------------~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~----   99 (305)
T COG0492          55 ----------------------------PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--GPFKVKTDK----   99 (305)
T ss_pred             ----------------------------ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--ceEEEEECC----
Confidence                                        11123455666777777788888877 7788887653  388999886    


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                       +. ++|+.||+|||...
T Consensus       100 -~~-~~ak~vIiAtG~~~  115 (305)
T COG0492         100 -GT-YEAKAVIIATGAGA  115 (305)
T ss_pred             -Ce-EEEeEEEECcCCcc
Confidence             44 99999999999754

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.47  E-value=2.4e-12  Score=124.50  Aligned_cols=147  Identities=20%  Similarity=0.195  Sum_probs=100.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+||||||+|++||+.|++  +|++|+|+|+. .+|+.+.  +++.  ..+                 ....    
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~~--~gg~--~~~-----------------~~~v----   76 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMW--GGGM--LFN-----------------KIVV----   76 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCccc--cCcc--ccc-----------------cccc----
Confidence            46899999999999999999999  89999999965 5553221  1110  000                 0000    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC-CeEEEEEeec--
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG-RKFLLKVEKR--  204 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~V~~~~~--  204 (481)
                          ..+...++++.|+++.....+.+.   .++..+...|.+.+.+.|++++++++|.++..++ + ...+|.+...  
T Consensus        77 ----~~~~~~~l~~~gv~~~~~~~g~~~---vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v  148 (257)
T PRK04176         77 ----QEEADEILDEFGIRYKEVEDGLYV---ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPV  148 (257)
T ss_pred             ----hHHHHHHHHHCCCCceeecCccee---ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccc
Confidence                124556788888887664434322   3467888899999999999999999999998765 3 3445554320  


Q ss_pred             ----ccCceEEEEcCeEEEccCCChhHHHH
Q 011610          205 ----TMNLVECIEADYLLIASGSSQQGHRL  230 (481)
Q Consensus       205 ----~~~~~~~i~ad~VIlAtG~~g~g~~l  230 (481)
                          .......++|+.||+|||+++.....
T Consensus       149 ~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~  178 (257)
T PRK04176        149 EMAGLHVDPLTIEAKAVVDATGHDAEVVSV  178 (257)
T ss_pred             cccCCCCCcEEEEcCEEEEEeCCCcHHHHH
Confidence                01113579999999999987754433

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.46  E-value=3.3e-12  Score=123.21  Aligned_cols=154  Identities=18%  Similarity=0.198  Sum_probs=103.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+||||||+|++||+.|++  .|++|+||||. .+|++..  +++ +.+.            .      ...    
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~~--~gg-~~~~------------~------~~~----   72 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSW--GGG-MLFS------------K------IVV----   72 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcccc--CCC-ccee------------c------ccc----
Confidence            46899999999999999999999  78999999965 5553211  111 1000            0      000    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC--CeEEEEEeecc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG--RKFLLKVEKRT  205 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--~~~~V~~~~~~  205 (481)
                          ..+..++++++|+++.....+.+..   +...+.+.|.+.+.+.|++++.++.|.++..++ +  ...+|.++...
T Consensus        73 ----~~~~~~~l~~~gi~~~~~~~g~~~~---~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~-~~~~V~GVv~~~~~  144 (254)
T TIGR00292        73 ----EKPAHEILDEFGIRYEDEGDGYVVA---DSAEFISTLASKALQAGAKIFNGTSVEDLITRD-DTVGVAGVVINWSA  144 (254)
T ss_pred             ----cchHHHHHHHCCCCeeeccCceEEe---eHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CCCceEEEEeCCcc
Confidence                0134457778888876544444432   356788899999999999999999999998865 3  24456553200


Q ss_pred             ---c---CceEEEEcCeEEEccCCChhHH-HHHHHcCCC
Q 011610          206 ---M---NLVECIEADYLLIASGSSQQGH-RLAAQLGHS  237 (481)
Q Consensus       206 ---~---~~~~~i~ad~VIlAtG~~g~g~-~la~~~G~~  237 (481)
                         .   .....++|+.||.|||.++.-. .+.++++..
T Consensus       145 v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~  183 (254)
T TIGR00292       145 IELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKIVLE  183 (254)
T ss_pred             ccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence               0   1135799999999999776543 444555544

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=99.45  E-value=2.7e-11  Score=116.16  Aligned_cols=172  Identities=19%  Similarity=0.211  Sum_probs=96.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC---CCCCCceEEecCCceeecc-----CCCcchhHHhhc------
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK---GKPLSKVKISGGGRCNVTN-----GHCADKMILAGH------  114 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~---~~~g~k~~~sG~g~~n~~~-----~~~~~~~~~~~~------  114 (481)
                      ..+||||||+|.+|+.||.+|+.  .|.+|+|+|.   +.+|+....+-+|-.-+..     ....++.++..+      
T Consensus         4 ~~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA   81 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTA   81 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHh--cCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccc
Confidence            46899999999999999999999  8999999993   3566554444434221110     011222233221      


Q ss_pred             -cCCCChhchh---hHHhcCChHHHHHHHHhcCCccee-----ecCCe-------eeec---C-CCh----HHHHHHHHH
Q 011610          115 -YPRGHKEFRG---SFFSLHGPMDTMSWFSDHGVELKT-----EDDGR-------VFPV---S-DSS----SSVIDCLLT  170 (481)
Q Consensus       115 -~~~~~~~~~~---~~l~~~~~~~~~~~~~~~Gi~~~~-----~~~g~-------~~p~---~-~~a----~~~~~~l~~  170 (481)
                       |.+...++.+   ..+-.|..-+..+|+.+.|..+..     +..|.       ..|.   + ...    ..+++.+.+
T Consensus        82 ~FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re  161 (552)
T COG3573          82 AFDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLRE  161 (552)
T ss_pred             ccCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHH
Confidence             1111111111   222344455667888888876553     22111       1111   0 112    234444544


Q ss_pred             HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec---------cc----CceEEEEcCeEEEccCC
Q 011610          171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR---------TM----NLVECIEADYLLIASGS  223 (481)
Q Consensus       171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~---------~~----~~~~~i~ad~VIlAtG~  223 (481)
                      ...+.-+++.+.++|..+...+ +...+|+-+-.         .+    .+..+++|..||+++|+
T Consensus       162 ~~~~~~v~f~~RHrV~~l~~t~-grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGG  226 (552)
T COG3573         162 AQRRGRVTFRFRHRVDGLTTTG-GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGG  226 (552)
T ss_pred             HHhCCceEEEeeeeccceEeeC-CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCC
Confidence            4445558999999999998875 33233331100         00    11247899999999985

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.40  E-value=8.9e-12  Score=113.31  Aligned_cols=147  Identities=21%  Similarity=0.239  Sum_probs=103.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .+.||+||||||+||+||++||+  .|++|+|+|+ ..+|+.+.  +||.  +-|                 +-.+    
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w--~GGm--lf~-----------------~iVv----   81 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIW--GGGM--LFN-----------------KIVV----   81 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCccc--cccc--ccc-----------------eeee----
Confidence            35799999999999999999999  7999999995 47773221  0110  011                 0111    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC-CeEEEEEee---
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG-RKFLLKVEK---  203 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~V~~~~---  203 (481)
                          .++..+++++.|+++...+++.+.   -++..+...|..++.+.|++|+..+.|.++...+ + +..+|.++-   
T Consensus        82 ----~~~a~~iL~e~gI~ye~~e~g~~v---~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~-~~rVaGvVvNWt~V  153 (262)
T COG1635          82 ----REEADEILDEFGIRYEEEEDGYYV---ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRD-DPRVAGVVVNWTPV  153 (262)
T ss_pred             ----cchHHHHHHHhCCcceecCCceEE---ecHHHHHHHHHHHHHhcCceeeecceEEEEEEec-CCceEEEEEecchh
Confidence                124456788999999888777554   3566777888888889999999999999998876 4 333444321   


Q ss_pred             ----cccCceEEEEcCeEEEccCCChhHHHHH
Q 011610          204 ----RTMNLVECIEADYLLIASGSSQQGHRLA  231 (481)
Q Consensus       204 ----~~~~~~~~i~ad~VIlAtG~~g~g~~la  231 (481)
                          ..-+ ...++|+.||-|||.+..--.++
T Consensus       154 ~~~~lhvD-Pl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         154 QMAGLHVD-PLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             hhcccccC-cceeeEEEEEeCCCCchHHHHHH
Confidence                0001 24799999999999876543443

>PLN02661 Putative thiazole synthesis

Probab=99.40  E-value=6e-12  Score=124.95  Aligned_cols=167  Identities=19%  Similarity=0.296  Sum_probs=108.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|++||+.|++. +|++|+|||++ .+|       +|.|  ....      +...+      +.+.  
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~G-------GG~~--~gg~------l~~~~------vv~~--  146 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPG-------GGAW--LGGQ------LFSAM------VVRK--  146 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccc-------ccee--eCcc------ccccc------cccc--
Confidence            458999999999999999999973 48999999975 444       2333  1100      00011      1111  


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEee---
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEK---  203 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~---  203 (481)
                            ...++++++|+++... ++  |+...++..+...|.+.+. +.|++++.++.|.++..++ +...+|.+..   
T Consensus       147 ------~a~e~LeElGV~fd~~-dg--y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v  216 (357)
T PLN02661        147 ------PAHLFLDELGVPYDEQ-EN--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALV  216 (357)
T ss_pred             ------HHHHHHHHcCCCcccC-CC--eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchh
Confidence                  1235778889987544 23  3344456677778887665 4789999999999999875 4555665421   


Q ss_pred             ---cccC---ceEEEEcCeEEEccCCCh----hHHHHHHHcCCCcccCCCceeEeeeC
Q 011610          204 ---RTMN---LVECIEADYLLIASGSSQ----QGHRLAAQLGHSIVDPVPSLFTFKIA  251 (481)
Q Consensus       204 ---~~~~---~~~~i~ad~VIlAtG~~g----~g~~la~~~G~~i~~~~p~l~~~~~~  251 (481)
                         ....   ....++|++||+|||+++    .+++...++|+  .++.|.+.++...
T Consensus       217 ~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~g~--~~~~pg~~~~~~~  272 (357)
T PLN02661        217 AQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM--IDSVPGMKALDMN  272 (357)
T ss_pred             hhccCCCCccceeEEECCEEEEcCCCCCcchhhhhhcccccCC--ccCCCCccccchh
Confidence               0000   124799999999999775    33444455666  3446777777655

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.40  E-value=6e-12  Score=132.41  Aligned_cols=183  Identities=17%  Similarity=0.173  Sum_probs=103.8

Q ss_pred             CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcc----------h------
Q 011610           45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD----------K------  108 (481)
Q Consensus        45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~----------~------  108 (481)
                      -+.+.++||+|||||.+|+++|++|++..+|.+|+|||++.++.......+|.+. .......          .      
T Consensus        19 L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~-~~~~~~~~~~~~~g~~~~~~l~~~   97 (460)
T TIGR03329        19 LVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCML-TWSTKFFTLKRLFGEAEAARLVKA   97 (460)
T ss_pred             CCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCcccc-ccccCHHHHHHhhCHHHHHHHHHH
Confidence            3445678999999999999999999994348999999987765321111112111 0100000          0      


Q ss_pred             --------hHHhhccCCCChhchh-hHHh-cCCh------HHHHHHHHhcCCcc-eee--------------cCCeeeec
Q 011610          109 --------MILAGHYPRGHKEFRG-SFFS-LHGP------MDTMSWFSDHGVEL-KTE--------------DDGRVFPV  157 (481)
Q Consensus       109 --------~~~~~~~~~~~~~~~~-~~l~-~~~~------~~~~~~~~~~Gi~~-~~~--------------~~g~~~p~  157 (481)
                              .++...+.- ...+.. ..+. ..+.      .+..+.+++.|++. ..-              ..+.++|.
T Consensus        98 ~~~~~~~~~~l~~~~~i-~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~  176 (460)
T TIGR03329        98 SEQAVLEIAAFCEQHNI-DAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPV  176 (460)
T ss_pred             HHHHHHHHHHHHHHhCC-CCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCC
Confidence                    000000000 000000 0000 1111      12233445566531 110              01122332


Q ss_pred             C--CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          158 S--DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       158 ~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      .  .++..++..|.+.+++.|++|+.+++|++++. +  +.+.|++.+      ..+.||.||+|+|++..  .++..++
T Consensus       177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~------g~v~A~~VV~Atga~s~--~l~~~~~  245 (460)
T TIGR03329       177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPD------GQVTADKVVLALNAWMA--SHFPQFE  245 (460)
T ss_pred             CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCC------cEEECCEEEEccccccc--ccChhhc
Confidence            2  25678889999999999999999999999974 2  456777764      46999999999998753  3444555


Q ss_pred             CCccc
Q 011610          236 HSIVD  240 (481)
Q Consensus       236 ~~i~~  240 (481)
                      ..+.+
T Consensus       246 ~~~~p  250 (460)
T TIGR03329       246 RSIAI  250 (460)
T ss_pred             CeEEE
Confidence            55443

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.39  E-value=4.5e-12  Score=132.62  Aligned_cols=158  Identities=19%  Similarity=0.199  Sum_probs=96.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ...+|+|||||++||+||.+|++  .|++|+|+|+. .+|        |.|+.+.....+...+..........++.. +
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vG--------G~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~-L   77 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVG--------GLWVYTPKSESDPLSLDPTRSIVHSSVYES-L   77 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCc--------ceeecCCCcCCCccccCCCCcccchhhhhh-h
Confidence            45899999999999999999999  78999999965 565        677665432111000000000000111111 1


Q ss_pred             hcCChHHHHHHHHhcCCcce--eecCCeeeecCCChHHHHHHHHHHHHhCCCE--EEcCceEEEEEecCCCCeEEEEEee
Q 011610          128 SLHGPMDTMSWFSDHGVELK--TEDDGRVFPVSDSSSSVIDCLLTEAKHRGVV--LQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~--~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                      ....+.+.+.|..-...+..  .......||   ....+.++|.+.+++.|+.  |+++++|+++...+  +.|.|++.+
T Consensus        78 ~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp---~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~  152 (461)
T PLN02172         78 RTNLPRECMGYRDFPFVPRFDDESRDSRRYP---SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKN  152 (461)
T ss_pred             hccCCHhhccCCCCCCCcccccccCcCCCCC---CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEc
Confidence            22223333332211111100  011234565   4577999999999999988  99999999998764  779888763


Q ss_pred             cccCceEEEEcCeEEEccCC
Q 011610          204 RTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~  223 (481)
                       ..+...+..+|+||+|||.
T Consensus       153 -~~~~~~~~~~d~VIvAtG~  171 (461)
T PLN02172        153 -SGGFSKDEIFDAVVVCNGH  171 (461)
T ss_pred             -CCCceEEEEcCEEEEeccC
Confidence             1111235689999999995

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.38  E-value=7.1e-12  Score=126.45  Aligned_cols=174  Identities=24%  Similarity=0.319  Sum_probs=100.5

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeecc-CCCc-c-------h----hHHhhccCCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTN-GHCA-D-------K----MILAGHYPRG  118 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~-~~~~-~-------~----~~~~~~~~~~  118 (481)
                      ||+|||||++|+++|++|++  +|++|+|||++.++........|.+.... .... .       .    ..+...+...
T Consensus         1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   78 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIP   78 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcc
Confidence            89999999999999999999  89999999987665311100011111110 0000 0       0    0111111111


Q ss_pred             Chhchh-hHHhcC-Ch------HHHHHHHHhcCCcceeec----------------CCeeeecC--CChHHHHHHHHHHH
Q 011610          119 HKEFRG-SFFSLH-GP------MDTMSWFSDHGVELKTED----------------DGRVFPVS--DSSSSVIDCLLTEA  172 (481)
Q Consensus       119 ~~~~~~-~~l~~~-~~------~~~~~~~~~~Gi~~~~~~----------------~g~~~p~~--~~a~~~~~~l~~~~  172 (481)
                      .. +.. ..+... +.      +...+..+..++.+...+                .+..+|..  .+...+++.|.+.+
T Consensus        79 ~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~  157 (358)
T PF01266_consen   79 VG-FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEA  157 (358)
T ss_dssp             CE-EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHH
T ss_pred             cc-cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHH
Confidence            10 000 000000 11      123344555665322110                01112211  13688999999999


Q ss_pred             HhCCCEEEcCceEEEEEecCCCCeEE-EEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          173 KHRGVVLQTGKVVTTASSDNAGRKFL-LKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~-V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++.|++|+.+++|++|..++  +.+. |++.+     +. +.||.||+|+|.+.  ..++..++..+
T Consensus       158 ~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~-----g~-i~ad~vV~a~G~~s--~~l~~~~~~~~  214 (358)
T PF01266_consen  158 QRAGVEIRTGTEVTSIDVDG--GRVTGVRTSD-----GE-IRADRVVLAAGAWS--PQLLPLLGLDL  214 (358)
T ss_dssp             HHTT-EEEESEEEEEEEEET--TEEEEEEETT-----EE-EEECEEEE--GGGH--HHHHHTTTTSS
T ss_pred             HHhhhhccccccccchhhcc--cccccccccc-----cc-cccceeEecccccc--eeeeecccccc
Confidence            99999999999999999876  5665 99886     55 99999999999865  45778888743

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06116 glutathione reductase; Validated

Probab=99.38  E-value=1.7e-10  Score=121.20  Aligned_cols=138  Identities=22%  Similarity=0.289  Sum_probs=79.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .+|||+||||||+|++||+.|++  .|++|+|+|++.+|        |.|  .|..|.+++.+...     ..+.     
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~~~G--------G~c--~n~gciP~k~l~~~-----~~~~-----   60 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAM--YGAKVALIEAKRLG--------GTC--VNVGCVPKKLMWYG-----AQIA-----   60 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccchh--------hhh--hccCcchHHHHHHH-----HHHH-----
Confidence            36999999999999999999999  79999999987666        777  56666553222110     0000     


Q ss_pred             cCChHHHHHHHHhcCCcceeec--CCeeeec-CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610          129 LHGPMDTMSWFSDHGVELKTED--DGRVFPV-SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT  205 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~--~g~~~p~-~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~  205 (481)
                          ..+..+....|+......  ...+... ......+.+.+.+.+.+.||+++.++ ++.+.  .  .  .|+++   
T Consensus        61 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~--~--~--~v~~~---  126 (450)
T PRK06116         61 ----EAFHDYAPGYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD--A--H--TVEVN---  126 (450)
T ss_pred             ----HHHHhHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--C--EEEEC---
Confidence                011111222333211000  0000000 00011223344555677899998774 44442  2  3  34443   


Q ss_pred             cCceEEEEcCeEEEccCCCh
Q 011610          206 MNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       206 ~~~~~~i~ad~VIlAtG~~g  225 (481)
                         +..+++|+||+|||+.+
T Consensus       127 ---g~~~~~d~lViATGs~p  143 (450)
T PRK06116        127 ---GERYTADHILIATGGRP  143 (450)
T ss_pred             ---CEEEEeCEEEEecCCCC
Confidence               56799999999999764

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.37  E-value=1.8e-11  Score=131.08  Aligned_cols=182  Identities=17%  Similarity=0.186  Sum_probs=104.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceE--Ee----cCCceeeccCC----CcchhHHhhccCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVK--IS----GGGRCNVTNGH----CADKMILAGHYPR  117 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~--~s----G~g~~n~~~~~----~~~~~~~~~~~~~  117 (481)
                      +..+||+|||||+.|+++|+.|++  +|++|+|||++.++....  .+    ++.+.......    +.....+...+  
T Consensus         4 ~~~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~--   79 (546)
T PRK11101          4 SQETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRI--   79 (546)
T ss_pred             CccccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHh--
Confidence            346999999999999999999999  799999999876552111  11    11111000000    00000001110  


Q ss_pred             CChhchh---hH---HhcCCh---HHHHHHHHhcCCcceee----------------cCCeeeecC-CChHHHHHHHHHH
Q 011610          118 GHKEFRG---SF---FSLHGP---MDTMSWFSDHGVELKTE----------------DDGRVFPVS-DSSSSVIDCLLTE  171 (481)
Q Consensus       118 ~~~~~~~---~~---l~~~~~---~~~~~~~~~~Gi~~~~~----------------~~g~~~p~~-~~a~~~~~~l~~~  171 (481)
                       .++++.   .+   +.....   ....++....|++...-                ..+..||.. .++..+..++...
T Consensus        80 -a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~  158 (546)
T PRK11101         80 -ARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLD  158 (546)
T ss_pred             -chHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHH
Confidence             000000   00   000000   12233445566543210                112334421 2456778888888


Q ss_pred             HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +.++|++++++++|+++..++ +..++|++.+..++....|+|+.||+|+|.|.+  .+++..|.+
T Consensus       159 A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~--~l~~~~g~~  221 (546)
T PRK11101        159 AKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ--HIAEYADLR  221 (546)
T ss_pred             HHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhHH--HHHHhcCCC
Confidence            999999999999999998765 344567764322233467999999999999874  466666643

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.36  E-value=1.9e-11  Score=125.95  Aligned_cols=178  Identities=17%  Similarity=0.241  Sum_probs=101.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCc--eeeccCCCcchhHH-------hhccCCC-
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGR--CNVTNGHCADKMIL-------AGHYPRG-  118 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~--~n~~~~~~~~~~~~-------~~~~~~~-  118 (481)
                      ++||+|||||++|+++|++|+++.+|.+|+|+|+.. ++........|.  +.+..........+       ...+... 
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   81 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH   81 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence            589999999999999999999943389999999763 543211111111  11101000000000       0000000 


Q ss_pred             Chhch--hhHHhcCChH------HHHHHHHhcCCcceee--------------cCCeeeecCC--ChHHHHHHHHHHHHh
Q 011610          119 HKEFR--GSFFSLHGPM------DTMSWFSDHGVELKTE--------------DDGRVFPVSD--SSSSVIDCLLTEAKH  174 (481)
Q Consensus       119 ~~~~~--~~~l~~~~~~------~~~~~~~~~Gi~~~~~--------------~~g~~~p~~~--~a~~~~~~l~~~~~~  174 (481)
                      ...+.  ..++-..+.+      ...++....|++...-              ..+..+|...  +...+.++|.+.+++
T Consensus        82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~  161 (393)
T PRK11728         82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA  161 (393)
T ss_pred             CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence            00000  0000001111      1223344455542210              1122333321  467889999999999


Q ss_pred             CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          175 RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       175 ~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      .|++++++++|.++..++  +.+.|.+.+      .++.||.||+|+|.+.  ..+++.+|..
T Consensus       162 ~Gv~i~~~~~V~~i~~~~--~~~~V~~~~------g~i~ad~vV~A~G~~s--~~l~~~~g~~  214 (393)
T PRK11728        162 RGGEIRLGAEVTALDEHA--NGVVVRTTQ------GEYEARTLINCAGLMS--DRLAKMAGLE  214 (393)
T ss_pred             CCCEEEcCCEEEEEEecC--CeEEEEECC------CEEEeCEEEECCCcch--HHHHHHhCCC
Confidence            999999999999998764  557777764      3799999999999876  3567777764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.33  E-value=6.5e-11  Score=122.69  Aligned_cols=74  Identities=23%  Similarity=0.317  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +...++..|.+.+++.|++++++++|++++.++  +.+.+.+.+...+.+.+++||+||+|+|.+.  ..++..+|..
T Consensus       195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s--~~l~~~~~~~  268 (410)
T PRK12409        195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS--RALAAMLGDR  268 (410)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcCh--HHHHHHhCCC
Confidence            456778889999999999999999999998754  5566655430000023689999999999886  3566666754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.33  E-value=3.6e-10  Score=119.02  Aligned_cols=139  Identities=24%  Similarity=0.297  Sum_probs=78.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..|||+||||||+|++||..|++  .|.+|+|+|+..+|        |.|  .|..+.+.+.+..           ..  
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~~G--------G~c--~~~gciP~k~l~~-----------~~--   57 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEKLG--------GTC--LNRGCIPSKALLH-----------AA--   57 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccc--------cce--eecccCCcHHHHH-----------hh--
Confidence            46999999999999999999999  79999999987665        667  3444444222111           00  


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeec-CCC----hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPV-SDS----SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-~~~----a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                        ...+....+..+|+.....  ...++. ...    ...+...+...+++.||+++.++ ++.+  +.  ..+.|...+
T Consensus        58 --~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~--~~~~v~~~~  128 (462)
T PRK06416         58 --ERADEARHSEDFGIKAENV--GIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV--DP--NTVRVMTED  128 (462)
T ss_pred             --hHHHHHHHHHhcCcccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC--CEEEEecCC
Confidence              0001111122333321100  000000 000    01122234556677899998774 4333  22  445554321


Q ss_pred             cccCceEEEEcCeEEEccCCCh
Q 011610          204 RTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                          ++..+.+|+||+|||+.+
T Consensus       129 ----~~~~~~~d~lViAtGs~p  146 (462)
T PRK06416        129 ----GEQTYTAKNIILATGSRP  146 (462)
T ss_pred             ----CcEEEEeCEEEEeCCCCC
Confidence                136799999999999865

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.33  E-value=3.3e-11  Score=123.51  Aligned_cols=68  Identities=19%  Similarity=0.294  Sum_probs=55.1

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ++..+...|.+.+++.|++++.+++|+++..++  +.+.|.+.+      .++.||.||+|+|++.  ..+++.+|..
T Consensus       143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~------~~i~a~~vV~aaG~~~--~~l~~~~g~~  210 (380)
T TIGR01377       143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTK------GSYQANKLVVTAGAWT--SKLLSPLGIE  210 (380)
T ss_pred             cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCcch--HHHhhhcccC
Confidence            456788889999999999999999999998764  567777663      4799999999999876  3577777755

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.33  E-value=3.5e-11  Score=126.61  Aligned_cols=69  Identities=12%  Similarity=0.276  Sum_probs=57.3

Q ss_pred             ChHHHHHHHHHHHHh----CC--CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHH
Q 011610          160 SSSSVIDCLLTEAKH----RG--VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQ  233 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~----~G--v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~  233 (481)
                      +...+...|.+.+++    .|  ++|+++++|++|+.++ ++.+.|++.+      .+++||+||+|+|++.  ..+++.
T Consensus       209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~------G~i~A~~VVvaAG~~S--~~La~~  279 (497)
T PTZ00383        209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR------GEIRARFVVVSACGYS--LLFAQK  279 (497)
T ss_pred             CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC------CEEEeCEEEECcChhH--HHHHHH
Confidence            567788999999988    77  8899999999999874 4678888874      4799999999999887  568888


Q ss_pred             cCCC
Q 011610          234 LGHS  237 (481)
Q Consensus       234 ~G~~  237 (481)
                      +|+.
T Consensus       280 ~Gi~  283 (497)
T PTZ00383        280 MGYG  283 (497)
T ss_pred             hCCC
Confidence            8763

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.33  E-value=2.1e-11  Score=124.80  Aligned_cols=186  Identities=17%  Similarity=0.129  Sum_probs=102.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccC---CCc-------chhHHhhccCC-
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNG---HCA-------DKMILAGHYPR-  117 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~---~~~-------~~~~~~~~~~~-  117 (481)
                      +++||+|||||++|+++|++|++  .|.+|+|||++..+.....++ +...+...   ...       ...++...+.. 
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~~~~~ss~-~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~   78 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPPHQQGSSH-GDTRIIRHAYGEGPAYVPLVLRAQELWRELERE   78 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCCCCCcCcC-CcceEEEeeccCCchhhHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999  789999999876542111111 11111100   000       00011111100 


Q ss_pred             -CChhchh--hH-HhcCC---hHHHHHHHHhcCCcceee-----------------cCCeeeecC--CChHHHHHHHHHH
Q 011610          118 -GHKEFRG--SF-FSLHG---PMDTMSWFSDHGVELKTE-----------------DDGRVFPVS--DSSSSVIDCLLTE  171 (481)
Q Consensus       118 -~~~~~~~--~~-l~~~~---~~~~~~~~~~~Gi~~~~~-----------------~~g~~~p~~--~~a~~~~~~l~~~  171 (481)
                       ....+..  .+ +..-.   .....+.+++.|++...-                 ..+.++|..  ..+..++..+.+.
T Consensus        79 ~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~  158 (376)
T PRK11259         79 SGEPLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRL  158 (376)
T ss_pred             hCCccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHH
Confidence             0000000  00 00000   112233444555443210                 011222221  1456778888888


Q ss_pred             HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcccCCCceeE
Q 011610          172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFT  247 (481)
Q Consensus       172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~~~p~l~~  247 (481)
                      +.+.|++++++++|+++..++  +.+.|++++     + .+.||.||+|+|++..  .++..+...+.+.+..++.
T Consensus       159 ~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~-----g-~~~a~~vV~A~G~~~~--~l~~~~~~~i~~~~~~~~~  224 (376)
T PRK11259        159 AREAGAELLFNEPVTAIEADG--DGVTVTTAD-----G-TYEAKKLVVSAGAWVK--DLLPPLELPLTPVRQVLAW  224 (376)
T ss_pred             HHHCCCEEECCCEEEEEEeeC--CeEEEEeCC-----C-EEEeeEEEEecCcchh--hhcccccCCceEEEEEEEE
Confidence            888999999999999998765  567777764     3 7999999999998753  4544445444443333333

>PRK09897 hypothetical protein; Provisional

Probab=99.32  E-value=3.1e-11  Score=127.73  Aligned_cols=156  Identities=18%  Similarity=0.188  Sum_probs=105.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEec--CCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISG--GGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG--~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      +++|+|||||++|+++|.+|.+.....+|+|+|+ ..+|+++..+.  ...|+.+|.....       .....     ..
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~-------~p~~~-----~~   68 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIE-------IPPIY-----CT   68 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccc-------cCCCh-----HH
Confidence            3689999999999999999987444579999996 57887655433  3455555543211       11111     12


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCCh---HHHHHHHHHHHHhCC--CEEEcCceEEEEEecCCCCeEEEEE
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSS---SSVIDCLLTEAKHRG--VVLQTGKVVTTASSDNAGRKFLLKV  201 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a---~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~~~V~~  201 (481)
                      +..|...+...++.+.+++....+.+.++|....+   .++.+.+.+.+.+.|  +.++.+++|+++..++  +.+.|++
T Consensus        69 f~~Wl~~~~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t  146 (534)
T PRK09897         69 YLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLAT  146 (534)
T ss_pred             HHHHhhhhhHHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEE
Confidence            23333334444566677766555556788877665   455556666677777  7888899999998765  6677776


Q ss_pred             eecccCceEEEEcCeEEEccCC
Q 011610          202 EKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       202 ~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      .+    ++..+.+|.||+|||.
T Consensus       147 ~~----gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        147 NQ----DLPSETFDLAVIATGH  164 (534)
T ss_pred             CC----CCeEEEcCEEEECCCC
Confidence            53    1367999999999996

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.31  E-value=9.7e-12  Score=129.48  Aligned_cols=162  Identities=21%  Similarity=0.303  Sum_probs=93.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ++|||+||||||+|++||+.|++  .|++|+|||+. .++.+.. + +|++.. +  ..+  .+...+....+      +
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g~k~~-~-gg~l~~-~--~~e--~l~~~~~~~~~------~   68 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAGAKNV-T-GGRLYA-H--SLE--HIIPGFADSAP------V   68 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCCCccc-c-cceech-h--hHH--HHhhhhhhcCc------c
Confidence            46999999999999999999999  79999999965 5554432 1 222211 1  000  11111100000      0


Q ss_pred             hcCChHHHHHHHHhcCC---cceee----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE
Q 011610          128 SLHGPMDTMSWFSDHGV---ELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi---~~~~~----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                      ......+...++...+.   .+...    .....|  ......+.+.|.+.+++.|++++.+++|+++..++ +..+.+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~  145 (428)
T PRK10157         69 ERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSY--SVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVE  145 (428)
T ss_pred             cceeeeeeEEEEcCCCceeeccccccccCCCCCce--eeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEE
Confidence            00000000001111110   00000    000011  12345667788889999999999999999998764 3333444


Q ss_pred             EeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          201 VEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       201 ~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ++      +.++.|+.||+|+|.++   .+++++|+.
T Consensus       146 ~~------g~~i~A~~VI~A~G~~s---~l~~~lgl~  173 (428)
T PRK10157        146 AD------GDVIEAKTVILADGVNS---ILAEKLGMA  173 (428)
T ss_pred             cC------CcEEECCEEEEEeCCCH---HHHHHcCCC
Confidence            33      46799999999999864   578888876

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.31  E-value=7.8e-11  Score=124.12  Aligned_cols=75  Identities=12%  Similarity=0.225  Sum_probs=58.5

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +...+..+|.+.+++.|++|+++++|++++.++ ++.|.|++.+...+.+.+++||+||+|+|++.  ..+++.+|+.
T Consensus       176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s--~~La~~~Gi~  250 (483)
T TIGR01320       176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA--LPLLQKSGIP  250 (483)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCeEEEEEeeccCCceEEEECCEEEECCCcch--HHHHHHcCCC
Confidence            567889999999999999999999999998754 35576665421222234799999999999987  5688888875

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.31  E-value=8.8e-11  Score=119.78  Aligned_cols=181  Identities=22%  Similarity=0.253  Sum_probs=105.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCce--EEecCCcee--eccCCCcc---------hhHHhhc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKV--KISGGGRCN--VTNGHCAD---------KMILAGH  114 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~--~~sG~g~~n--~~~~~~~~---------~~~~~~~  114 (481)
                      +++||+|||||+.|+++|++|++..++++|+|+||. .++...  .-||-+.+-  .+......         ..++.++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            478999999999999999999996566999999965 555311  112211111  11110000         0011111


Q ss_pred             cCCCChhchhhHHhcCChH------HHHHHHHhcCCc-ceeec---------------CC-eeeecC--CChHHHHHHHH
Q 011610          115 YPRGHKEFRGSFFSLHGPM------DTMSWFSDHGVE-LKTED---------------DG-RVFPVS--DSSSSVIDCLL  169 (481)
Q Consensus       115 ~~~~~~~~~~~~l~~~~~~------~~~~~~~~~Gi~-~~~~~---------------~g-~~~p~~--~~a~~~~~~l~  169 (481)
                      ++..-... ..+.-.++.+      ...+-+...|+. ....+               .+ ...|.+  .....+..+|.
T Consensus        82 ~~~~f~~~-g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~  160 (429)
T COG0579          82 LGIPFINC-GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA  160 (429)
T ss_pred             hCCccccc-CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence            11000000 0001112211      122223345555 11100               01 111211  24567888999


Q ss_pred             HHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEE-EEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          170 TEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVEC-IEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       170 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~-i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      +.++++|++++++++|++|++.+ ++.+.+.+.+     +++ ++|+.||.|.|...  ..+++..|...
T Consensus       161 e~a~~~g~~i~ln~eV~~i~~~~-dg~~~~~~~~-----g~~~~~ak~Vin~AGl~A--d~la~~~g~~~  222 (429)
T COG0579         161 EEAQANGVELRLNTEVTGIEKQS-DGVFVLNTSN-----GEETLEAKFVINAAGLYA--DPLAQMAGIPE  222 (429)
T ss_pred             HHHHHcCCEEEecCeeeEEEEeC-CceEEEEecC-----CcEEEEeeEEEECCchhH--HHHHHHhCCCc
Confidence            99999999999999999999886 3455666654     333 99999999999766  57899999876

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.30  E-value=1.1e-12  Score=136.58  Aligned_cols=158  Identities=28%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ||||||||++|++||+.+++  .|.+|+|||+. .+|+..  +.++.+.+....  .. .          .......   
T Consensus         1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~--t~~~~~~~~~~~--~~-~----------~~~~gi~---   60 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMA--TSGGVSPFDGNH--DE-D----------QVIGGIF---   60 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGG--GGSSS-EETTEE--HH-H----------HHHHHHH---
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcc--eECCcCChhhcc--hh-h----------ccCCCHH---
Confidence            89999999999999999999  79999999965 566422  111222111100  00 0          0000100   


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                        .++.+.+...+-.......+..-....+...+...|.+.+.+.|++|++++.|.++..++ +....|++.+ .. +..
T Consensus        61 --~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~-~~-g~~  135 (428)
T PF12831_consen   61 --REFLNRLRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVET-KS-GRK  135 (428)
T ss_dssp             --HHHHHST-----------------------------------------------------------------------
T ss_pred             --HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc-cc-ccc
Confidence              111111111110000000000000012233344556666677899999999999999875 4555677763 12 357


Q ss_pred             EEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          211 CIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++.|+.||.|||- +   .++...|.+.
T Consensus       136 ~i~A~~~IDaTG~-g---~l~~~aG~~~  159 (428)
T PF12831_consen  136 EIRAKVFIDATGD-G---DLAALAGAPY  159 (428)
T ss_dssp             ----------------------------
T ss_pred             ccccccccccccc-c---cccccccccc
Confidence            8999999999993 2   3455555543

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.29  E-value=9.6e-11  Score=121.60  Aligned_cols=70  Identities=24%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++..+...|.+.+++.|++|+++++|++++.++ +..+.|+++      +.++.||+||+|+|.+.  ..++..+|+++
T Consensus       199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~------~~~~~a~~VV~a~G~~~--~~l~~~~g~~~  268 (416)
T PRK00711        199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTG------GGVITADAYVVALGSYS--TALLKPLGVDI  268 (416)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeC------CcEEeCCEEEECCCcch--HHHHHHhCCCc
Confidence            566788899999999999999999999998765 333456665      35799999999999876  35666777653

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.29  E-value=1.1e-10  Score=120.81  Aligned_cols=76  Identities=20%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCccc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVD  240 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~  240 (481)
                      ...+...|.+.+.+.|++++.+++|++++..+++..+.|++++      ..+.|++||+|+|++.  ..+++.+|.++ +
T Consensus       182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~------g~i~a~~vVvaagg~~--~~l~~~~g~~~-~  252 (407)
T TIGR01373       182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR------GFIGAKKVGVAVAGHS--SVVAAMAGFRL-P  252 (407)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC------ceEECCEEEECCChhh--HHHHHHcCCCC-C
Confidence            4566778889999999999999999999764313345677764      3699999999999876  35666777763 4


Q ss_pred             CCCce
Q 011610          241 PVPSL  245 (481)
Q Consensus       241 ~~p~l  245 (481)
                      ..|..
T Consensus       253 ~~~~~  257 (407)
T TIGR01373       253 IESHP  257 (407)
T ss_pred             cCccc
Confidence            44443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.29  E-value=8.7e-10  Score=114.28  Aligned_cols=49  Identities=41%  Similarity=0.597  Sum_probs=42.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKM  109 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~  109 (481)
                      ++||++|||+||+|..||+.|++  .|.+|+|+|+. ..|        |.|  .|..|.+++
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lG--------GtC--ln~GCIPsK   52 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLG--------GTC--LNVGCIPSK   52 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcC--------ceE--EeeCccccH
Confidence            57999999999999999999999  67889999987 676        788  788887743

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.28  E-value=4.1e-10  Score=118.96  Aligned_cols=149  Identities=24%  Similarity=0.297  Sum_probs=82.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .+|||+||||||+|++||+.+++  .|.+|+|||+ ...+++.  .-+|.|  .|..+.+.+.+..           .. 
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~~~~~~g~~--~~Gg~c--~n~gc~P~k~l~~-----------~a-   64 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEAWKNPKGKP--ALGGTC--LNVGCIPSKALLA-----------SS-   64 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHh--CCCeEEEEecccCCCCCC--CcCCcc--ccccccHHHHHHH-----------HH-
Confidence            46999999999999999999999  7999999997 1111100  013677  5655544211111           00 


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecC-CChH----HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSSS----SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a~----~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                      ..  .....+++...|++....  ..-|+.- ....    .+.+.+...++..+|+++.+. +..+..++  +.+.|.+.
T Consensus        65 ~~--~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~--~~~~v~v~  137 (475)
T PRK06327         65 EE--FENAGHHFADHGIHVDGV--KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTD--AGYEIKVT  137 (475)
T ss_pred             HH--HHHHHhhHHhcCccCCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCC--CCCEEEEe
Confidence            00  012222334455543210  0111100 0011    122344455667899998664 44444332  34556554


Q ss_pred             ecccCceEEEEcCeEEEccCCCh
Q 011610          203 KRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .   +++.++++|+||+|||+.+
T Consensus       138 ~---~~~~~~~~d~lViATGs~p  157 (475)
T PRK06327        138 G---EDETVITAKHVIIATGSEP  157 (475)
T ss_pred             c---CCCeEEEeCEEEEeCCCCC
Confidence            2   1135799999999999865

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.27  E-value=4.8e-11  Score=109.28  Aligned_cols=142  Identities=19%  Similarity=0.237  Sum_probs=86.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+||||||+|++||+.|++  .|++|+|+|++ .+|.       +-+  .....         |   ++..++   
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GG-------g~~--~Gg~l---------f---~~iVVq---   69 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGG-------GMW--GGGML---------F---NKIVVQ---   69 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BT-------TTT--S-CTT---------------EEEE---
T ss_pred             ccCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCc-------ccc--ccccc---------c---chhhhh---
Confidence            46899999999999999999999  69999999965 6662       211  00000         0   001111   


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE-EEEEeec--
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF-LLKVEKR--  204 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~-~V~~~~~--  204 (481)
                           ++...++++.|+++....++.+.   -++..+...|...+.+.|++|+..+.|.++...+ ++++ +|.++-.  
T Consensus        70 -----~~a~~iL~elgi~y~~~~~g~~v---~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~-~~rV~GvViNWt~V  140 (230)
T PF01946_consen   70 -----EEADEILDELGIPYEEYGDGYYV---ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRE-DDRVAGVVINWTPV  140 (230)
T ss_dssp             -----TTTHHHHHHHT---EE-SSEEEE---S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEEC-SCEEEEEEEEEHHH
T ss_pred             -----hhHHHHHHhCCceeEEeCCeEEE---EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEc-CCeEEEEEEEehHH
Confidence                 12235677889988776544333   4677788888888888999999999999998775 3443 5554310  


Q ss_pred             -----ccCceEEEEcCeEEEccCCChh
Q 011610          205 -----TMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       205 -----~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                           +-+ ...++|+.||-|||.++.
T Consensus       141 ~~~glHvD-Pl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen  141 EMAGLHVD-PLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             HTT--T-B--EEEEESEEEE---SSSS
T ss_pred             hHhhcCCC-cceEEEeEEEeCCCCchH
Confidence                 001 258999999999997653

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.27  E-value=2.1e-10  Score=120.36  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=55.0

Q ss_pred             ChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +...+.++|.+.+.+ .|++++++++|+++..++ ++.|.+++.+...+...+++||+||+|+|++.  ..+++.+|..
T Consensus       182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS--~~La~~~Gi~  257 (497)
T PRK13339        182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGGA--IPLLQKSGIP  257 (497)
T ss_pred             CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcch--HHHHHHcCCC
Confidence            456778889888864 589999999999998763 35677764210111113689999999999987  5688888864

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.27  E-value=1.1e-10  Score=124.01  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHH-cCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQ-LGH  236 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~-~G~  236 (481)
                      ++..++..+...+.+.|++++.+++|+++..++  +.+.|++.+...+...+++|+.||+|+|.|.+  .+++. +|.
T Consensus       153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~--~l~~~~~g~  226 (508)
T PRK12266        153 DDARLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDTATGKRYTVRARALVNAAGPWVK--QFLDDGLGL  226 (508)
T ss_pred             CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEcCCCCEEEEEcCEEEECCCccHH--HHHhhccCC
Confidence            456666778888999999999999999998764  66777765422233457999999999999874  35443 354

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.27  E-value=2.2e-10  Score=120.91  Aligned_cols=75  Identities=16%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +...+..+|.+.+++.| ++|+++++|++++.++ ++.|.|.+.+...+...+++|++||+|+|++.  ..+++.+|+.
T Consensus       181 d~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s--~~L~~~~Gi~  256 (494)
T PRK05257        181 NFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA--LPLLQKSGIP  256 (494)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCCEEEEEEEcCCCceEEEEcCEEEECCCcch--HHHHHHcCCC
Confidence            45678899999999887 8999999999998765 34576665421112123699999999999987  5688888876

>PRK10262 thioredoxin reductase; Provisional

Probab=99.27  E-value=1.3e-10  Score=116.45  Aligned_cols=115  Identities=22%  Similarity=0.289  Sum_probs=74.9

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      .+..+||+||||||+|++||..|++  .|++|+++|+...|        |.|......        ..|+...       
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~~~g--------g~~~~~~~~--------~~~~~~~-------   57 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKG--------GQLTTTTEV--------ENWPGDP-------   57 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEeecCC--------CceecCceE--------CCCCCCC-------
Confidence            3467899999999999999999999  68999999965555        333222100        0111000       


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                                                    .......+.+.+.+.+...+++++.+ +|..++..+  +.|.+..+.   
T Consensus        58 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~---  101 (321)
T PRK10262         58 ------------------------------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDS---  101 (321)
T ss_pred             ------------------------------CCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecC---
Confidence                                          00112234455555666667777665 577777654  667766542   


Q ss_pred             CceEEEEcCeEEEccCCCh
Q 011610          207 NLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g  225 (481)
                         ..+.+|+||+|||+.+
T Consensus       102 ---~~~~~d~vilAtG~~~  117 (321)
T PRK10262        102 ---GEYTCDALIIATGASA  117 (321)
T ss_pred             ---CEEEECEEEECCCCCC
Confidence               3689999999999864

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.25  E-value=1.4e-10  Score=127.36  Aligned_cols=66  Identities=17%  Similarity=0.274  Sum_probs=52.9

Q ss_pred             CeeeecC--CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          152 GRVFPVS--DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       152 g~~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +..+|..  .++..++.+|.+.+++ |++++++++|+++..++  +.+.|.+.+     +..+.||.||+|+|.+.
T Consensus       396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~-----g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAG-----GTLASAPVVVLANGHDA  463 (662)
T ss_pred             cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECC-----CcEEECCEEEECCCCCc
Confidence            4555544  2567889999999988 99999999999998765  567777764     55678999999999875

>PRK07190 hypothetical protein; Provisional

Probab=99.23  E-value=3.3e-10  Score=119.78  Aligned_cols=165  Identities=21%  Similarity=0.201  Sum_probs=94.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhh--
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS--  125 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~--  125 (481)
                      ..+||+||||||+|+++|+.|++  .|.+|+|||+. .+..      .++++..+....   ++.+...-.. .+...  
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~~~------~gra~~l~~~tl---e~L~~lGl~~-~l~~~~~   71 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGPLE------VGRADALNARTL---QLLELVDLFD-ELYPLGK   71 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcccc------cccceEeCHHHH---HHHHhcChHH-HHHhhCc
Confidence            45899999999999999999999  79999999965 3322      255544442211   1111110000 00000  


Q ss_pred             ---HHhcCChHHHHHHHHhcCCcceeecCCeeee--cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE
Q 011610          126 ---FFSLHGPMDTMSWFSDHGVELKTEDDGRVFP--VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       126 ---~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p--~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                         ....+.....   +..... ......+..+|  .......+...|.+.+.+.|++++++++|++++.++  +.+.+.
T Consensus        72 ~~~~~~~~~~g~~---i~~~~~-~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~  145 (487)
T PRK07190         72 PCNTSSVWANGKF---ISRQSS-WWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTT  145 (487)
T ss_pred             cceeEEEecCCce---Eeeccc-cCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEE
Confidence               0000000000   000000 00000000011  111234566777788888999999999999998875  556565


Q ss_pred             EeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          201 VEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       201 ~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      +.+     +.+++|++||.|+|+.+   .+.+.+|+...
T Consensus       146 ~~~-----g~~v~a~~vVgADG~~S---~vR~~lgi~f~  176 (487)
T PRK07190        146 LSN-----GERIQSRYVIGADGSRS---FVRNHFNVPFE  176 (487)
T ss_pred             ECC-----CcEEEeCEEEECCCCCH---HHHHHcCCCcc
Confidence            554     46899999999999865   45667777653

>PRK10015 oxidoreductase; Provisional

Probab=99.23  E-value=3e-11  Score=125.81  Aligned_cols=162  Identities=19%  Similarity=0.306  Sum_probs=91.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .+|||+||||||||++||+.|++  .|++|+|||+. .++.|.. + ++++....   .+  .+...+..... +     
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g~k~~-~-gg~i~~~~---~~--~l~~~~~~~~~-i-----   68 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAGCKNM-T-GGRLYAHT---LE--AIIPGFAASAP-V-----   68 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCcccc-c-Cceeeccc---HH--HHcccccccCC-c-----
Confidence            46999999999999999999999  79999999965 4554432 2 23332111   11  11111110000 0     


Q ss_pred             hcCChHHHHHHHHhc---CCcceeecC----CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE
Q 011610          128 SLHGPMDTMSWFSDH---GVELKTEDD----GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~---Gi~~~~~~~----g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                      ......+...++...   .+.+.....    ...|  ......+...|.+.+++.|++++.+++|+++..++ ++...+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~  145 (429)
T PRK10015         69 ERKVTREKISFLTEESAVTLDFHREQPDVPQHASY--TVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQ  145 (429)
T ss_pred             cccccceeEEEEeCCCceEeecccCCCCCCCcCce--EeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEE
Confidence            000000000000000   000000000    0011  12234566678888999999999999999998764 3333444


Q ss_pred             EeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          201 VEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       201 ~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +.      +.++.|+.||+|+|..+   .+++.+|..
T Consensus       146 ~~------~~~i~A~~VI~AdG~~s---~v~~~lg~~  173 (429)
T PRK10015        146 AG------DDILEANVVILADGVNS---MLGRSLGMV  173 (429)
T ss_pred             eC------CeEEECCEEEEccCcch---hhhcccCCC
Confidence            43      46799999999999764   566667753

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.20  E-value=2.8e-10  Score=117.21  Aligned_cols=167  Identities=20%  Similarity=0.240  Sum_probs=93.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEec-CCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISG-GGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG-~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ...+||+||||||+|+++|+.|++  .|++|+|||+....+. ...+ +.++.....   ....+.+.+.-.. .+....
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~~~~-~~~~~~~r~~~l~~---~~~~~l~~lGl~~-~~~~~~   76 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREPPRW-QADQPDLRVYAFAA---DNAALLDRLGVWP-AVRAAR   76 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCCccc-ccCCCCCEEEEecH---HHHHHHHHCCchh-hhhHhh
Confidence            356899999999999999999999  7999999997543210 0001 112211110   0111121111000 000000


Q ss_pred             HhcCChHHHHHHHHhcC---Ccce-----eecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE
Q 011610          127 FSLHGPMDTMSWFSDHG---VELK-----TEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL  198 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~G---i~~~-----~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~  198 (481)
                      ...+.  .+ .+....+   +.+.     ....+..    .+...+.+.|.+.+++.|++++++++|++++.++  +.+.
T Consensus        77 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~  147 (392)
T PRK08773         77 AQPYR--RM-RVWDAGGGGELGFDADTLGREQLGWI----VENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR  147 (392)
T ss_pred             CCccc--EE-EEEeCCCCceEEechhccCCCcCEEE----EEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE
Confidence            00000  00 0000000   0000     0000111    1246778889999999999999999999998765  5677


Q ss_pred             EEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          199 LKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       199 V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      |++.+     +.++.||.||.|+|.++   .+.+.+|+..
T Consensus       148 v~~~~-----g~~~~a~~vV~AdG~~S---~vr~~~g~~~  179 (392)
T PRK08773        148 LRLDD-----GRRLEAALAIAADGAAS---TLRELAGLPV  179 (392)
T ss_pred             EEECC-----CCEEEeCEEEEecCCCc---hHHHhhcCCc
Confidence            77765     56799999999999876   4566666553

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.19  E-value=8.5e-11  Score=120.80  Aligned_cols=170  Identities=16%  Similarity=0.141  Sum_probs=91.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +.+||+|||||++|+++|+.|++  .|++|+|+|+......   .+.+.+.-..........+.....-.. .+. .  .
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~---~~~~~~~r~~~l~~~~~~~l~~~g~~~-~~~-~--~   74 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPPRP---ADDAWDSRVYAISPSSQAFLERLGVWQ-ALD-A--A   74 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCccc---cCCCCCCceEeecHHHHHHHHHcCchh-hhh-h--h
Confidence            56899999999999999999999  7999999996633211   011111000000000111111111000 000 0  0


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeee---cCCChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFP---VSDSSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---~~~~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                      .+.+.+...+.....-.+.......-+|   ...+...+.+.|.+.+++.| ++++ +++|++++.++  +.+.|++.+ 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~-  150 (388)
T PRK07608         75 RLAPVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLAD-  150 (388)
T ss_pred             cCCcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECC-
Confidence            0000000000000000000000000011   11235678889999998887 9998 99999998764  567777765 


Q ss_pred             ccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          205 TMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                          +.+++||.||.|+|.++   .+.+.+|...
T Consensus       151 ----g~~~~a~~vI~adG~~S---~vr~~~~~~~  177 (388)
T PRK07608        151 ----GQVLRADLVVGADGAHS---WVRSQAGIKA  177 (388)
T ss_pred             ----CCEEEeeEEEEeCCCCc---hHHHhcCCCc
Confidence                56799999999999876   3556666653

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.18  E-value=4e-10  Score=116.44  Aligned_cols=69  Identities=20%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ....+.+.|.+.+.+.|++++++++|++++.++  +.+.|++.+     +..+.||.||.|+|.++   .+.+.+|...
T Consensus       109 ~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~ad~vI~AdG~~S---~vr~~~g~~~  177 (403)
T PRK07333        109 ENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSD-----GSVLEARLLVAADGARS---KLRELAGIKT  177 (403)
T ss_pred             EhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECC-----CCEEEeCEEEEcCCCCh---HHHHHcCCCc
Confidence            456788999999999999999999999998765  567777765     56799999999999875   3666677653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.18  E-value=1.3e-10  Score=108.11  Aligned_cols=134  Identities=23%  Similarity=0.320  Sum_probs=75.9

Q ss_pred             EEECCchHHHHHHHHHhccCCCCc-EEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCC-hhchhhHHhcC
Q 011610           54 VVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGH-KEFRGSFFSLH  130 (481)
Q Consensus        54 vIIGgG~aGl~aA~~la~~~~g~~-V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~  130 (481)
                      +||||||+|+++|+.|.+  .|.+ |+|||++ .+|+.        +.-....  .  .+  ...... ..+.-..+..+
T Consensus         1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~--------w~~~~~~--~--~~--~~~~~~~~~~~~~~~~~~   64 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGV--------WRRYYSY--T--RL--HSPSFFSSDFGLPDFESF   64 (203)
T ss_dssp             EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTTH--------HHCH-TT--T--T---BSSSCCTGGSS--CCCHS
T ss_pred             CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCe--------eEEeCCC--C--cc--ccCccccccccCCccccc
Confidence            699999999999999999  6888 9999976 77732        2111000  0  00  000000 00000000111


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                      ...+...+...           ..+   .....+.++|...+++.+++++++++|+++..++  +.|.|++.+     +.
T Consensus        65 ~~~~~~~~~~~-----------~~~---~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~-----~~  123 (203)
T PF13738_consen   65 SFDDSPEWRWP-----------HDF---PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRD-----GR  123 (203)
T ss_dssp             CHHHHHHHHHS-----------BSS---EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETT-----S-
T ss_pred             ccccCCCCCCC-----------ccc---CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEe-----cc
Confidence            11221111110           111   2457788999999999999999999999999886  559999986     56


Q ss_pred             EEEcCeEEEccCCC
Q 011610          211 CIEADYLLIASGSS  224 (481)
Q Consensus       211 ~i~ad~VIlAtG~~  224 (481)
                      +++|+.||+|||..
T Consensus       124 ~~~a~~VVlAtG~~  137 (203)
T PF13738_consen  124 TIRADRVVLATGHY  137 (203)
T ss_dssp             EEEEEEEEE---SS
T ss_pred             eeeeeeEEEeeecc
Confidence            89999999999963

...

>PRK08244 hypothetical protein; Provisional

Probab=99.17  E-value=5.4e-10  Score=118.72  Aligned_cols=166  Identities=14%  Similarity=0.165  Sum_probs=90.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+||||||+|+++|+.|++  .|++|+|||+. .+..      .++....+.   ...++.+.+.-. ..+.... .
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~~~------~~ra~~l~~---~~~e~l~~lGl~-~~l~~~~-~   68 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKETVP------YSKALTLHP---RTLEILDMRGLL-ERFLEKG-R   68 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC------CcceeEecH---HHHHHHHhcCcH-HHHHhhc-c
Confidence            5899999999999999999999  79999999965 3211      111111110   011111111100 0000000 0


Q ss_pred             cCChHHHHHHHH-hcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          129 LHGPMDTMSWFS-DHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       129 ~~~~~~~~~~~~-~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                      ...  . ..+.. ...+.+........|........+.+.|.+.+++.|++++++++|++++.++  +.+.|++.+  .+
T Consensus        69 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~--~~  141 (493)
T PRK08244         69 KLP--S-GHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRG--PD  141 (493)
T ss_pred             ccc--c-eEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEe--CC
Confidence            000  0 00000 0001111001111111112345667788888888999999999999998765  556666542  11


Q ss_pred             ceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          208 LVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      +..+++||+||.|+|..+   .+.+.+|+..
T Consensus       142 g~~~i~a~~vVgADG~~S---~vR~~lgi~~  169 (493)
T PRK08244        142 GLRTLTSSYVVGADGAGS---IVRKQAGIAF  169 (493)
T ss_pred             ccEEEEeCEEEECCCCCh---HHHHhcCCCc
Confidence            125799999999999875   3556666654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.16  E-value=2.6e-10  Score=118.28  Aligned_cols=170  Identities=12%  Similarity=0.142  Sum_probs=89.2

Q ss_pred             CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCce-eeccCCCcchhHHhhccCCCChhc
Q 011610           45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRC-NVTNGHCADKMILAGHYPRGHKEF  122 (481)
Q Consensus        45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~-n~~~~~~~~~~~~~~~~~~~~~~~  122 (481)
                      ...+..+||+|||||++|+++|+.|++  .|++|+|+|+.. .....    .++. .+...    .......+.-     
T Consensus        13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~----~g~~~~l~~~----~~~~L~~lGl-----   77 (415)
T PRK07364         13 STRSLTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAEAAAA----KGQAYALSLL----SARIFEGIGV-----   77 (415)
T ss_pred             CCCccccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCccccCC----CCcEEEechH----HHHHHHHCCh-----
Confidence            344557999999999999999999999  799999999653 21100    0111 11110    0011111110     


Q ss_pred             hhhHHhcCChHHHHHHHHhcC---Ccceeec-CCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeE
Q 011610          123 RGSFFSLHGPMDTMSWFSDHG---VELKTED-DGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKF  197 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~G---i~~~~~~-~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~  197 (481)
                      ...+.....+.+...+....+   +.+...+ ....++.......+.+.|.+.+.+. +++++++++|++++.++  +.+
T Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~  155 (415)
T PRK07364         78 WEKILPQIGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAA  155 (415)
T ss_pred             hhhhHhhcCCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--Cee
Confidence            000000000000000000000   0000000 0000100112235777888887765 79999999999998765  556


Q ss_pred             EEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCC
Q 011610          198 LLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH  236 (481)
Q Consensus       198 ~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~  236 (481)
                      .|++.+  .++..+++||.||.|+|..+   .+.+.+|.
T Consensus       156 ~v~~~~--~~~~~~i~adlvIgADG~~S---~vR~~~~~  189 (415)
T PRK07364        156 TVTLEI--EGKQQTLQSKLVVAADGARS---PIRQAAGI  189 (415)
T ss_pred             EEEEcc--CCcceEEeeeEEEEeCCCCc---hhHHHhCC
Confidence            676652  12225799999999999876   34445554

>PRK06847 hypothetical protein; Provisional

Probab=99.16  E-value=1.5e-10  Score=118.39  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=87.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +..||+|||||++|+++|+.|++  .|++|+|+|+....+.   .|.+ ..+..    ........+.     +...+..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~---~g~g-~~l~~----~~~~~l~~~g-----l~~~~~~   67 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEWRV---YGAG-ITLQG----NALRALRELG-----VLDECLE   67 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcc---CCce-eeecH----HHHHHHHHcC-----CHHHHHH
Confidence            46799999999999999999999  7999999996532110   0111 11100    0001111110     0000000


Q ss_pred             cCChHHHHHHHHhcCCcceeec----CCeeeec--CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610          129 LHGPMDTMSWFSDHGVELKTED----DGRVFPV--SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~----~g~~~p~--~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                      .-.+.+...++...|-......    .+..||.  ......+.+.|.+.+.+.|++++++++|++++.++  +.+.|.+.
T Consensus        68 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~  145 (375)
T PRK06847         68 AGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFS  145 (375)
T ss_pred             hCCCccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEc
Confidence            0000000000001111000000    0011121  12346778889999988999999999999998764  56777776


Q ss_pred             ecccCceEEEEcCeEEEccCCChh
Q 011610          203 KRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      +     +.++.+|.||+|+|..+.
T Consensus       146 ~-----g~~~~ad~vI~AdG~~s~  164 (375)
T PRK06847        146 D-----GTTGRYDLVVGADGLYSK  164 (375)
T ss_pred             C-----CCEEEcCEEEECcCCCcc
Confidence            5     568999999999998753

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=99.16  E-value=4.5e-09  Score=107.75  Aligned_cols=67  Identities=28%  Similarity=0.433  Sum_probs=56.1

Q ss_pred             cCCCceeEEecCCCC--CCCCCc-----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          404 KGQFKDEFVTAGGVP--LSEISL-----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       404 ~~~~~~a~vt~GGv~--~~ei~~-----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                      ..|++.|++.+=|+.  -+-||+     .|+|.|.+|||||||   .+.|.+| |--+.|  +|.+||.+||.+++.+++
T Consensus       294 ipgle~a~~~r~g~~~~~~~i~~p~~L~~~l~~k~~~~lf~AG---Qi~G~~G-Y~Eaaa--~Gl~agina~~~~~~~~~  367 (433)
T TIGR00137       294 IPGLENAEFVRMGVMHRNTFINSPQLLTASLHFKDRQTLFFAG---QLTGVEG-YVASTA--GGWLAGINAARLALGEPL  367 (433)
T ss_pred             CcCccceEEeecceEEeeeeeCCHHHhhHHhccCCCCCEEECc---ccccchH-HHHHHH--HHHHHHHHHHHHHcCCCC
Confidence            458899999999976  344664     689999999999999   8888876 888887  999999999999877654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.15  E-value=9.4e-10  Score=108.20  Aligned_cols=157  Identities=21%  Similarity=0.234  Sum_probs=88.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      |||+|||||++|+++|+.|++  .|.+|+|+|+....+.. ..+.+   +..    ..........   ...    ....
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~~-~~~~~---~~~----~~~~~l~~~~---~~~----~~~~   63 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRYK-PCGGA---LSP----RVLEELDLPL---ELI----VNLV   63 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcc-cccCc---cCH----hHHHHhcCCc---hhh----hhhe
Confidence            699999999999999999999  79999999976433211 00000   000    0000000000   000    0000


Q ss_pred             ChHHHHHHHHhcCCcceee-cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTE-DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~-~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      .   ...++...+-..... .....+  ......+.+.|.+.+.+.|++++++++|+++..++  +.+.+.+..    ++
T Consensus        64 ~---~~~~~~~~~~~~~~~~~~~~~~--~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~----~~  132 (295)
T TIGR02032        64 R---GARFFSPNGDSVEIPIETELAY--VIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRG----GE  132 (295)
T ss_pred             e---eEEEEcCCCcEEEeccCCCcEE--EEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcC----cc
Confidence            0   000000000000000 000111  12346777889999999999999999999998765  555554432    14


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+++||.||+|+|..+   .+.+.+|...
T Consensus       133 ~~~~a~~vv~a~G~~s---~~~~~~~~~~  158 (295)
T TIGR02032       133 GTVTAKIVIGADGSRS---IVAKKLGLRK  158 (295)
T ss_pred             EEEEeCEEEECCCcch---HHHHhcCCCC
Confidence            6799999999999875   3566666543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.15  E-value=6e-10  Score=121.00  Aligned_cols=74  Identities=16%  Similarity=0.080  Sum_probs=54.8

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      ++..+...|...+++.|++++.+++|+++..++ ++..+.|++.+..+++...+.||.||+|+|+|.  -.+++.+|
T Consensus       230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws--~~l~~~~g  304 (627)
T PLN02464        230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC--DEVRKMAD  304 (627)
T ss_pred             cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH--HHHHHhcc
Confidence            467888899999999999999999999998752 134556665432222234789999999999886  35666665

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.14  E-value=2.3e-10  Score=110.23  Aligned_cols=171  Identities=13%  Similarity=0.142  Sum_probs=96.9

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcch------hHHhhccCCCC-
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK------MILAGHYPRGH-  119 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~------~~~~~~~~~~~-  119 (481)
                      ..+..||+|||||..|+++|++|++  +|.++++||+-.++.+-..+ .|...+......+.      .+-.+.|.... 
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~GSS-hg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~   80 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRGSS-HGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE   80 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccCcc-cCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence            4567899999999999999999999  78999999987665322111 12222222221110      00001111100 


Q ss_pred             ----------hhchhhHHhcCChHHHHHHHHhcCCccee---ecCCeeee---------------cC--CChHHHHHHHH
Q 011610          120 ----------KEFRGSFFSLHGPMDTMSWFSDHGVELKT---EDDGRVFP---------------VS--DSSSSVIDCLL  169 (481)
Q Consensus       120 ----------~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~---~~~g~~~p---------------~~--~~a~~~~~~l~  169 (481)
                                ..+....-.+.....+...++..++....   ++-.+.||               ..  ..+...+++|.
T Consensus        81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~  160 (399)
T KOG2820|consen   81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ  160 (399)
T ss_pred             hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence                      00000000000001111222222221110   11122233               11  13567789999


Q ss_pred             HHHHhCCCEEEcCceEEEEEecCC-CCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          170 TEAKHRGVVLQTGKVVTTASSDNA-GRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       170 ~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..++++|+.++.+.+|+.+...++ +..+.|+|.+     +..|.|+++|+|+|+|-
T Consensus       161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~-----gs~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD-----GSIYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHcCeEEecCcceeeEeeccCCCceeEEEecc-----CCeeecceEEEEecHHH
Confidence            999999999999999999875431 3456788876     67799999999999875

>PRK06834 hypothetical protein; Provisional

Probab=99.13  E-value=9.2e-10  Score=116.44  Aligned_cols=165  Identities=16%  Similarity=0.215  Sum_probs=92.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+||+||||||+|+++|+.|++  .|.+|+|||+.......    +.|....+.   ...++.+...-     ...+...
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~~~~----~~Ra~~l~~---~s~~~L~~lGl-----~~~l~~~   68 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQELV----GSRAGGLHA---RTLEVLDQRGI-----ADRFLAQ   68 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCC----CcceeeECH---HHHHHHHHcCc-----HHHHHhc
Confidence            4899999999999999999999  79999999965321100    011110110   11111211110     0010000


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      -.......+ ....+..........|........+.+.|.+.+++.|++|+++++|++++.++  +.+.|++.+     +
T Consensus        69 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~-----g  140 (488)
T PRK06834         69 GQVAQVTGF-AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSD-----G  140 (488)
T ss_pred             CCcccccee-eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECC-----C
Confidence            000000000 00000000000011111112345677888888888999999999999998875  567776654     4


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      .+++||+||.|+|+.+.   +.+.+|+...
T Consensus       141 ~~i~a~~vVgADG~~S~---vR~~lgi~~~  167 (488)
T PRK06834        141 RTLRAQYLVGCDGGRSL---VRKAAGIDFP  167 (488)
T ss_pred             CEEEeCEEEEecCCCCC---cHhhcCCCCC
Confidence            58999999999998763   4566676653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.13  E-value=2.9e-10  Score=114.63  Aligned_cols=72  Identities=28%  Similarity=0.344  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ...+.+.|.+.+++.|++++++++|++++.++  +.+.+.+....++...+++||.||.|+|..+   .+.+.++..
T Consensus       110 r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~adlvVgADG~~S---~vR~~l~~~  181 (356)
T PF01494_consen  110 RPELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEADLVVGADGAHS---KVRKQLGID  181 (356)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEESEEEE-SGTT----HHHHHTTGG
T ss_pred             HHHHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeEEEEeeeecccCccc---chhhhcccc
Confidence            45778889999999999999999999998875  5555555542334445899999999999875   566667655

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.13  E-value=5.7e-10  Score=109.04  Aligned_cols=62  Identities=21%  Similarity=0.352  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ++.+++.+.+++.|+++.++++|.....+. ++.+.|.+.+-+.+..++++||.+++|+|..+
T Consensus       253 Eisk~~qr~L~kQgikF~l~tkv~~a~~~~-dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP  314 (506)
T KOG1335|consen  253 EISKAFQRVLQKQGIKFKLGTKVTSATRNG-DGPVEIEVENAKTGKKETLECDVLLVSIGRRP  314 (506)
T ss_pred             HHHHHHHHHHHhcCceeEeccEEEEeeccC-CCceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence            556678888888999999999999999876 55777777765556678999999999999765

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.13  E-value=7.4e-10  Score=116.10  Aligned_cols=136  Identities=19%  Similarity=0.190  Sum_probs=81.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      +|||+||||||+|++||+.+++  .|++|+|+|++.+|        |.|  .|..|.+.+.+.           ... ..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~G--------G~c--~~~gciPsk~l~-----------~~a-~~   57 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEPRVG--------GTC--VIRGCVPKKLMV-----------YGS-TF   57 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCccC--------cee--ecCCcCchHHHH-----------HHH-HH
Confidence            5999999999999999999999  79999999987766        777  566666532221           110 00


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeee-----cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFP-----VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p-----~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                         ....+-...+|+.....  ...++     ....-..+.+.+...+++.||+++.+ ++..+..    +.+.|..+  
T Consensus        58 ---~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~~~--  125 (446)
T TIGR01424        58 ---GGEFEDAAGYGWTVGKA--RFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVLQD--  125 (446)
T ss_pred             ---HHHHhhhHhcCcCCCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEecC--
Confidence               00111122233321100  00000     00011233445666777889999876 5655532    33444322  


Q ss_pred             ccCceEEEEcCeEEEccCCCh
Q 011610          205 TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g  225 (481)
                          +..+.+|+||+|||+.+
T Consensus       126 ----g~~~~~d~lIiATGs~p  142 (446)
T TIGR01424       126 ----GTTYTAKKILIAVGGRP  142 (446)
T ss_pred             ----CeEEEcCEEEEecCCcC
Confidence                46799999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.12  E-value=4.7e-10  Score=116.10  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ...+.+.|.+.+.+.|++++++++|++++.++  +.+.|++.+     +.+++||.||.|+|.++   .+.+.+|..
T Consensus       111 ~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~a~~vVgAdG~~S---~vR~~lg~~  177 (405)
T PRK05714        111 NRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLAD-----GRQLRAPLVVAADGANS---AVRRLAGCA  177 (405)
T ss_pred             hHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECC-----CCEEEeCEEEEecCCCc---hhHHhcCCC
Confidence            45677888888888899999999999998765  567777765     56899999999999876   345556654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.12  E-value=1.1e-09  Score=111.61  Aligned_cols=54  Identities=17%  Similarity=0.289  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ++..++..|.+.+.+. |++++.+++|.+|+.    +  .|++.+      ..++||+||+|+|++.
T Consensus       143 ~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~--~v~t~~------g~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVET----G--TVRTSR------GDVHADQVFVCPGADF  197 (365)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec----C--eEEeCC------CcEEeCEEEECCCCCh
Confidence            5677888888888775 999999999999952    2  466664      3578999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.11  E-value=7.2e-10  Score=117.86  Aligned_cols=72  Identities=14%  Similarity=0.167  Sum_probs=54.6

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHH-HcCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAA-QLGH  236 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~-~~G~  236 (481)
                      +...+...+...+++.|++++.+++|+++..++  +.+.|.+.+.. +...+++|+.||+|+|.|.+  .+++ .+|.
T Consensus       153 d~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~--~l~~~~~g~  225 (502)
T PRK13369        153 DDARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDAD-GETRTVRARALVNAAGPWVT--DVIHRVAGS  225 (502)
T ss_pred             cHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeCC-CCEEEEEecEEEECCCccHH--HHHhhccCC
Confidence            456777788888999999999999999998764  66777776522 23357999999999999864  4544 3354

>PTZ00058 glutathione reductase; Provisional

Probab=99.11  E-value=1e-09  Score=117.29  Aligned_cols=51  Identities=35%  Similarity=0.517  Sum_probs=43.8

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcch
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK  108 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~  108 (481)
                      +....|||+|||||++|++||+.|++  .|.+|+|||++.+|        |.|  .|..|.++
T Consensus        44 ~~~~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~~~G--------GtC--ln~GCiPs   94 (561)
T PTZ00058         44 KPRMVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKDYLG--------GTC--VNVGCVPK   94 (561)
T ss_pred             CCCccccEEEECcCHHHHHHHHHHHH--cCCeEEEEeccccc--------ccc--cccCCCCC
Confidence            34467999999999999999999999  79999999987766        788  77777763

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.10  E-value=1.9e-09  Score=112.77  Aligned_cols=165  Identities=17%  Similarity=0.234  Sum_probs=90.6

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhh
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS  125 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (481)
                      ...+++||+||||||+|++||+.|++  .|++|+|+|+.....+. + |++ .        +. ...+.+.- ...+...
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~-c-gg~-i--------~~-~~l~~lgl-~~~~~~~   99 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKP-C-GGA-I--------PL-CMVGEFDL-PLDIIDR   99 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCC-c-ccc-c--------cH-hHHhhhcC-cHHHHHH
Confidence            44467999999999999999999999  79999999965322111 1 111 1        00 11111110 0011000


Q ss_pred             HHhcCChHHHHHHHHhcCCcceee----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEE
Q 011610          126 FFSLHGPMDTMSWFSDHGVELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLK  200 (481)
Q Consensus       126 ~l~~~~~~~~~~~~~~~Gi~~~~~----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~  200 (481)
                         ...   -..+....+......    ..+.+  ..-+...+.+.|.+++.+.|++++.+ .++++...+ +++.+.|+
T Consensus       100 ---~i~---~~~~~~p~~~~v~~~~~~~~~~~~--~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~  170 (450)
T PLN00093        100 ---KVT---KMKMISPSNVAVDIGKTLKPHEYI--GMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIH  170 (450)
T ss_pred             ---Hhh---hheEecCCceEEEecccCCCCCeE--EEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEE
Confidence               000   000000011111111    00111  11245667788889999999999865 587776432 02445565


Q ss_pred             Eeecc----cCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          201 VEKRT----MNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       201 ~~~~~----~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +.+..    .+...+++||.||.|+|..+   .+++.+|..
T Consensus       171 ~~~~~~~~~~g~~~~v~a~~VIgADG~~S---~vrr~lg~~  208 (450)
T PLN00093        171 YTSYDSGSGAGTPKTLEVDAVIGADGANS---RVAKDIDAG  208 (450)
T ss_pred             EEeccccccCCCccEEEeCEEEEcCCcch---HHHHHhCCC
Confidence            54210    12235799999999999865   567777754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.10  E-value=1.5e-09  Score=116.52  Aligned_cols=169  Identities=16%  Similarity=0.171  Sum_probs=91.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ...+||+||||||+|+++|+.|++  .|++|+|||+. .+..      .++......   ......+...-. ..+... 
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~~------~~ra~~l~~---~~~~~L~~lGl~-~~l~~~-   74 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLYD------LPRAVGIDD---EALRVLQAIGLA-DEVLPH-   74 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC------CCceeeeCH---HHHHHHHHcCCh-hHHHhh-
Confidence            467899999999999999999999  79999999965 3321      112110100   011111111100 000000 


Q ss_pred             HhcCChHHHHHHHHhcCCcce-ee---cCCeeee--cCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEE
Q 011610          127 FSLHGPMDTMSWFSDHGVELK-TE---DDGRVFP--VSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLL  199 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~-~~---~~g~~~p--~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V  199 (481)
                         ..+.....++...|.... ..   ....-||  .......+.+.|.+.+.+. |++|+++++|++++.++  +.+.|
T Consensus        75 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v  149 (538)
T PRK06183         75 ---TTPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTV  149 (538)
T ss_pred             ---cccCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEE
Confidence               000000001101111000 00   0001122  1123345667787877764 89999999999999875  55777


Q ss_pred             EEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          200 KVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       200 ~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++.+ .++...+++||.||.|+|+.+   .+-+.+|...
T Consensus       150 ~~~~-~~G~~~~i~ad~vVgADG~~S---~vR~~lg~~~  184 (538)
T PRK06183        150 TLTD-ADGQRETVRARYVVGCDGANS---FVRRTLGVPF  184 (538)
T ss_pred             EEEc-CCCCEEEEEEEEEEecCCCch---hHHHHcCCee
Confidence            6652 122236899999999999875   3445556553

>PRK06184 hypothetical protein; Provisional

Probab=99.10  E-value=1e-09  Score=116.80  Aligned_cols=166  Identities=17%  Similarity=0.182  Sum_probs=91.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+||||||+|+++|+.|++  .|++|+|||+. .+...      ++....+   ....++.+.+.-.. .+.... .
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~~~~------~ra~~l~---~~~~e~l~~lGl~~-~l~~~~-~   69 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEPFPG------SRGKGIQ---PRTQEVFDDLGVLD-RVVAAG-G   69 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcC------ccceeec---HHHHHHHHHcCcHH-HHHhcC-c
Confidence            5899999999999999999999  79999999964 33211      1111011   01112222211000 000000 0


Q ss_pred             cCChHHHHHHHHhcCC----ccee--e-cCCeeee--cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEE
Q 011610          129 LHGPMDTMSWFSDHGV----ELKT--E-DDGRVFP--VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLL  199 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi----~~~~--~-~~g~~~p--~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V  199 (481)
                      .+  ... .++...+.    .+..  . .....||  .......+...|.+.+.+.|++|+++++|++++.++  +.+.+
T Consensus        70 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v  144 (502)
T PRK06184         70 LY--PPM-RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTA  144 (502)
T ss_pred             cc--cce-eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEE
Confidence            00  000 00000000    0000  0 0000111  112234566788888888899999999999998765  55666


Q ss_pred             EEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          200 KVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       200 ~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++..  .+++.+++||+||.|+|+.+   .+.+.+|+..
T Consensus       145 ~~~~--~~~~~~i~a~~vVgADG~~S---~vR~~lgi~~  178 (502)
T PRK06184        145 RVAG--PAGEETVRARYLVGADGGRS---FVRKALGIGF  178 (502)
T ss_pred             EEEe--CCCeEEEEeCEEEECCCCch---HHHHhCCCCc
Confidence            5531  12256899999999999876   3566777664

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.10  E-value=2.7e-09  Score=109.88  Aligned_cols=160  Identities=18%  Similarity=0.204  Sum_probs=88.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      |||+||||||||+++|+.|++  .|++|+|+|+.....+. + |++         .+. ...+.+.- ...+....+...
T Consensus         1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~-c-g~~---------i~~-~~l~~l~i-~~~~~~~~~~~~   65 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKP-C-GGA---------IPP-CLIEEFDI-PDSLIDRRVTQM   65 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCc-C-cCC---------cCH-hhhhhcCC-chHHHhhhccee
Confidence            799999999999999999999  79999999965211111 1 111         000 11111110 000000000000


Q ss_pred             ChHHHHHHHHhcCCcceee-cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc---c
Q 011610          131 GPMDTMSWFSDHGVELKTE-DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT---M  206 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~-~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~---~  206 (481)
                            .+....|...... ....-|....+...+.+.|.+.+.+.|++++.. .|+++..++  +.+.|++.+..   .
T Consensus        66 ------~~~~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~v~~~~~~~~~~  136 (388)
T TIGR02023        66 ------RMISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR--DGVTLTYRTPKKGAG  136 (388)
T ss_pred             ------EEEcCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEEEEEEeccccCC
Confidence                  0000011101000 000111111345667788888899999999765 699987765  56666655210   1


Q ss_pred             CceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          207 NLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +...+++||.||.|+|..+   .+.+.+|..
T Consensus       137 ~~~~~i~a~~VI~AdG~~S---~v~r~lg~~  164 (388)
T TIGR02023       137 GEKGSVEADVVIGADGANS---PVAKELGLP  164 (388)
T ss_pred             CcceEEEeCEEEECCCCCc---HHHHHcCCC
Confidence            1135799999999999765   466777764

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.10  E-value=5.9e-10  Score=114.71  Aligned_cols=158  Identities=20%  Similarity=0.243  Sum_probs=90.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .+||+||||||+|+++|+.|++  .|++|+|||+. ....   -  .++.-....   ...++.+...-. ..+...   
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~---~--~~r~~~l~~---~~~~~L~~lG~~-~~i~~~---   67 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELL---E--RGRGIALSP---NALRALERLGLW-DRLEAL---   67 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCccccc---c--CceeeeecH---hHHHHHHHcCCh-hhhhhc---
Confidence            5899999999999999999999  79999999975 1110   0  112111110   001111111110 000000   


Q ss_pred             cCChHHHHHHHHhc-C-Cccee-----ecCCeeeecCCChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEE
Q 011610          129 LHGPMDTMSWFSDH-G-VELKT-----EDDGRVFPVSDSSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       129 ~~~~~~~~~~~~~~-G-i~~~~-----~~~g~~~p~~~~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                      ...+.....+.... . +.+..     ...+..+    ....+.+.|.+.+.+.+ ++++++++|+.++.++  +.+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~  141 (387)
T COG0654          68 GVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVV----PRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVT  141 (387)
T ss_pred             cCCceeeEEEecCCceeEEecccccCCCcceEEe----EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEE
Confidence            00000000000000 0 00000     0011222    35778899999998876 9999999999999876  555576


Q ss_pred             Ee-ecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          201 VE-KRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       201 ~~-~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      +. +     ++++.||.||.|+|.++   .+-+.+|
T Consensus       142 l~~d-----G~~~~a~llVgADG~~S---~vR~~~~  169 (387)
T COG0654         142 LSFD-----GETLDADLLVGADGANS---AVRRAAG  169 (387)
T ss_pred             EcCC-----CcEEecCEEEECCCCch---HHHHhcC
Confidence            66 5     56999999999999875   3455556

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.09  E-value=2.5e-09  Score=109.69  Aligned_cols=68  Identities=12%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          161 SSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ...+.+.|.+.+.+ .|++++++++|+++..++  +.+.|++.+     +.++.||.||.|+|.++   .+.+.++...
T Consensus       104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~ad~vV~AdG~~S---~vr~~l~~~~  172 (382)
T TIGR01984       104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDN-----GQQLRAKLLIAADGANS---KVRELLSIPT  172 (382)
T ss_pred             cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECC-----CCEEEeeEEEEecCCCh---HHHHHcCCCC
Confidence            46788889998888 499999999999998765  567777764     56799999999999875   4667777553

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN02463 lycopene beta cyclase

Probab=99.09  E-value=1.6e-09  Score=112.87  Aligned_cols=140  Identities=24%  Similarity=0.204  Sum_probs=85.1

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ....+||+||||||||+++|+.|++  .|++|+|||+.....        .   .+....-. +               .
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~--------~---p~~~g~w~-~---------------~   75 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSI--------W---PNNYGVWV-D---------------E   75 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccch--------h---ccccchHH-H---------------H
Confidence            3356899999999999999999999  799999999643210        0   01000000 0               0


Q ss_pred             HhcCChHHHHHHHHhcCCcceeec-----CCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEE
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTED-----DGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKV  201 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~-----~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~  201 (481)
                      +...+..+...... .+......+     ..+.|. ..+...+.+.|.+.+.+.|++++ .++|++++.++  +.+.|++
T Consensus        76 l~~lgl~~~l~~~w-~~~~v~~~~~~~~~~~~~y~-~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~  150 (447)
T PLN02463         76 FEALGLLDCLDTTW-PGAVVYIDDGKKKDLDRPYG-RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVC  150 (447)
T ss_pred             HHHCCcHHHHHhhC-CCcEEEEeCCCCccccCcce-eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEE
Confidence            01111111110000 000000000     011121 12456777888899988999996 57999998765  6677887


Q ss_pred             eecccCceEEEEcCeEEEccCCCh
Q 011610          202 EKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       202 ~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ++     +.+++||.||.|+|..+
T Consensus       151 ~d-----G~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        151 DD-----GVKIQASLVLDATGFSR  169 (447)
T ss_pred             CC-----CCEEEcCEEEECcCCCc
Confidence            76     66899999999999764

>PRK08013 oxidoreductase; Provisional

Probab=99.09  E-value=6e-10  Score=115.17  Aligned_cols=168  Identities=15%  Similarity=0.167  Sum_probs=91.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecC---CceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGG---GRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~---g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      .+||+||||||+|+++|+.|++  .|++|+|+|+......  ..|.   -|....+.   ....+.+.+.-.. .+....
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~~~~--~~g~~~~~r~~~l~~---~s~~~L~~lGl~~-~~~~~~   74 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVPEPL--AADAPPALRVSAINA---ASEKLLTRLGVWQ-DILARR   74 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCCccc--ccCCCCCceeeecch---hHHHHHHHcCCch-hhhhhc
Confidence            4899999999999999999999  7999999996532111  0010   11111111   0112222221000 000000


Q ss_pred             HhcCChHHHHHHHHh--cC-CcceeecCCeee-ecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEE
Q 011610          127 FSLHGPMDTMSWFSD--HG-VELKTEDDGRVF-PVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKV  201 (481)
Q Consensus       127 l~~~~~~~~~~~~~~--~G-i~~~~~~~g~~~-p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~  201 (481)
                      ...+   +-..+...  .+ +.+.....+..+ ........+.+.|.+.+.+. |++++++++|++++.++  +.+.|++
T Consensus        75 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~  149 (400)
T PRK08013         75 ASCY---HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTL  149 (400)
T ss_pred             Cccc---cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEE
Confidence            0000   00000000  00 000000001000 00123456778888888775 79999999999998765  5566776


Q ss_pred             eecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          202 EKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       202 ~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+     +.+++||.||.|+|..+   .+.+.+|...
T Consensus       150 ~~-----g~~i~a~lvVgADG~~S---~vR~~~~~~~  178 (400)
T PRK08013        150 KD-----GSMLTARLVVGADGANS---WLRNKADIPL  178 (400)
T ss_pred             cC-----CCEEEeeEEEEeCCCCc---HHHHHcCCCc
Confidence            65     57899999999999875   4556666553

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.08  E-value=1.6e-09  Score=106.98  Aligned_cols=112  Identities=27%  Similarity=0.396  Sum_probs=79.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      |||+|||||++|+++|..|++  .|.+|+|+|+..+|        |++.....        ...|+.    +        
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~g--------g~~~~~~~--------~~~~~~----~--------   50 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPG--------GQLTTTTE--------VENYPG----F--------   50 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCC--------cceeeccc--------ccccCC----C--------
Confidence            699999999999999999999  78999999977655        33321110        001110    0        


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                               +.......+...+.+.+++.|+++++ ++|.++..++  +.+.|++.+     +.
T Consensus        51 -------------------------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~-----~~   97 (300)
T TIGR01292        51 -------------------------PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGD-----GK   97 (300)
T ss_pred             -------------------------CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCC-----CC
Confidence                                     00011234556677778888999998 8999998764  667777764     56


Q ss_pred             EEEcCeEEEccCCCh
Q 011610          211 CIEADYLLIASGSSQ  225 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g  225 (481)
                      .+.+|+||+|||+.+
T Consensus        98 ~~~~d~liiAtG~~~  112 (300)
T TIGR01292        98 EYTAKAVIIATGASA  112 (300)
T ss_pred             EEEeCEEEECCCCCc
Confidence            899999999999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06126 hypothetical protein; Provisional

Probab=99.08  E-value=4.4e-09  Score=113.18  Aligned_cols=72  Identities=28%  Similarity=0.282  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          162 SSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       162 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ..+...|.+.+.+ .+++|+++++|+++..++  +.+.+++.+..++...++++|+||.|+|+.+   .+.+.+|+..
T Consensus       126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S---~VR~~lgi~~  198 (545)
T PRK06126        126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATVEDLDGGESLTIRADYLVGCDGARS---AVRRSLGISY  198 (545)
T ss_pred             HHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEEEECCCCcEEEEEEEEEEecCCcch---HHHHhcCCcc
Confidence            4466678887775 489999999999998765  5555655432223335799999999999875   4566677654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.07  E-value=4.8e-10  Score=117.57  Aligned_cols=135  Identities=21%  Similarity=0.269  Sum_probs=79.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      +|||+||||||+|+.||+.|++  .|.+|+|+|++.+|        |.|  .|..|.+++.+.           ... ..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~G--------G~c--~~~gciPsk~l~-----------~~a-~~   57 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEAKKLG--------GTC--VNVGCVPKKVMW-----------YAS-DL   57 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCcEEEecccccc--------cce--eccCcCccHHHH-----------HHH-HH
Confidence            5899999999999999999999  79999999987766        777  565665532211           110 00


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecC-CC----hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVS-DS----SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~----a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                         .+..+....+|++..... ..-++.- ..    ...+.+.+...+++.||+++.++.+.   .++  +.  |.++  
T Consensus        58 ---~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~--~~--v~v~--  124 (450)
T TIGR01421        58 ---AERMHDAADYGFYQNLEN-TFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKD--GT--VEVN--  124 (450)
T ss_pred             ---HHHHhHHhhcCcccCCcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccC--CE--EEEC--
Confidence               011111223343321000 0011100 00    11223345556777899999887542   122  32  4444  


Q ss_pred             ccCceEEEEcCeEEEccCCCh
Q 011610          205 TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g  225 (481)
                          +..+.+|+||+|||+.+
T Consensus       125 ----~~~~~~d~vIiAtGs~p  141 (450)
T TIGR01421       125 ----GRDYTAPHILIATGGKP  141 (450)
T ss_pred             ----CEEEEeCEEEEecCCCC
Confidence                45799999999999865

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.07  E-value=2e-09  Score=112.15  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             CeeeecC-CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHH
Q 011610          152 GRVFPVS-DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRL  230 (481)
Q Consensus       152 g~~~p~~-~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~l  230 (481)
                      +..||.. .+...++-.....+.++|.+++..++|+++..++  +.++|++.+..++...+++|+.||.|||.|.+  .+
T Consensus       153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d--~i  228 (532)
T COG0578         153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG--GVWGVEVEDRETGETYEIRARAVVNAAGPWVD--EI  228 (532)
T ss_pred             eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecC--CEEEEEEEecCCCcEEEEEcCEEEECCCccHH--HH
Confidence            3445422 2344666667778888999999999999999886  58899988755566678999999999999874  45


Q ss_pred             HHHcC
Q 011610          231 AAQLG  235 (481)
Q Consensus       231 a~~~G  235 (481)
                      .+..+
T Consensus       229 ~~~~~  233 (532)
T COG0578         229 LEMAG  233 (532)
T ss_pred             HHhhc
Confidence            55554

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.07  E-value=1.5e-09  Score=114.59  Aligned_cols=144  Identities=24%  Similarity=0.308  Sum_probs=81.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..|||+||||||+|+.||+.|++  .|++|+|+|++.+|        |.|  .|..|.+++.+...           . .
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~G--------G~c--~~~gciPsk~l~~~-----------a-~   58 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGKLG--------GTC--LHKGCIPSKALLHS-----------A-E   58 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCC--------cce--EcCCcCchHHHHHH-----------H-H
Confidence            46999999999999999999999  79999999987776        777  56666653222211           0 0


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecC-CChHHH----HHHHHHHHHhCCCEEEcCceEEEEEec---CCCCeEEEE
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSSSSV----IDCLLTEAKHRGVVLQTGKVVTTASSD---NAGRKFLLK  200 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a~~~----~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~~~V~  200 (481)
                      .+   ...+.....|+.....  ..-|+.. ..-..+    .......+++.||+++.+ +++.+..+   ++++.+.|.
T Consensus        59 ~~---~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~  132 (472)
T PRK05976         59 VF---QTAKKASPFGISVSGP--ALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVE  132 (472)
T ss_pred             HH---HHHHHHHhcCccCCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEE
Confidence            00   0001122233321100  0000000 000111    222334556779999887 45555432   001256666


Q ss_pred             EeecccCceEEEEcCeEEEccCCCh
Q 011610          201 VEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       201 ~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +.+   ++...+.+|+||+|||+.+
T Consensus       133 ~~~---g~~~~~~~d~lViATGs~p  154 (472)
T PRK05976        133 TET---GENEMIIPENLLIATGSRP  154 (472)
T ss_pred             eCC---CceEEEEcCEEEEeCCCCC
Confidence            543   1125799999999999865

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.06  E-value=1.1e-09  Score=112.10  Aligned_cols=67  Identities=15%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          161 SSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       161 a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ...+.+.|.+.+.+.| ++++.+++|++++.++  +.+.|++.+     +.++.+|.||.|+|..+   .+.+.++.+
T Consensus       105 r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~~~~vi~adG~~S---~vr~~l~~~  172 (385)
T TIGR01988       105 NRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDD-----GQQLRARLLVGADGANS---KVRQLAGIP  172 (385)
T ss_pred             cHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECC-----CCEEEeeEEEEeCCCCC---HHHHHcCCC
Confidence            4678888999998888 9999999999998765  567777765     56799999999999875   355666654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06185 hypothetical protein; Provisional

Probab=99.06  E-value=1.2e-09  Score=113.05  Aligned_cols=170  Identities=20%  Similarity=0.200  Sum_probs=90.3

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhh
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS  125 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (481)
                      ..+.+||+|||||++|+++|+.|++  .|++|+|||+. .....      .+....+.   ....+.+.+.-.. .+...
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~------~r~~~l~~---~s~~~L~~lG~~~-~~~~~   70 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRD------FRGDTVHP---STLELMDELGLLE-RFLEL   70 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCcc------ccCceeCh---hHHHHHHHcCChh-HHhhc
Confidence            4467999999999999999999999  79999999965 32211      01000000   0111122111000 00000


Q ss_pred             HHhcCChHHHHHHHHhcCC-----cceeecCCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEE
Q 011610          126 FFSLHGPMDTMSWFSDHGV-----ELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLL  199 (481)
Q Consensus       126 ~l~~~~~~~~~~~~~~~Gi-----~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V  199 (481)
                         ...+..-+.+. ..|-     .+........+........+.+.|.+.+.+. |++++++++|+++..++ +....|
T Consensus        71 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v  145 (407)
T PRK06185         71 ---PHQKVRTLRFE-IGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGV  145 (407)
T ss_pred             ---ccceeeeEEEE-ECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEE
Confidence               00000000000 0000     0000000000001123456778888877664 89999999999998765 344345


Q ss_pred             EEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          200 KVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       200 ~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+..  .++..+++||.||.|+|.++   .+.+.+|...
T Consensus       146 ~~~~--~~g~~~i~a~~vI~AdG~~S---~vr~~~gi~~  179 (407)
T PRK06185        146 RART--PDGPGEIRADLVVGADGRHS---RVRALAGLEV  179 (407)
T ss_pred             EEEc--CCCcEEEEeCEEEECCCCch---HHHHHcCCCc
Confidence            5432  11124799999999999875   3566677654

>PLN02697 lycopene epsilon cyclase

Probab=99.04  E-value=3.5e-09  Score=112.20  Aligned_cols=136  Identities=23%  Similarity=0.240  Sum_probs=82.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+||+||||||+|+++|+.|++  .|++|+|||+..+..         ||.   ....  .....+             
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~---------~n~---GvW~--~~l~~l-------------  157 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFT---------NNY---GVWE--DEFKDL-------------  157 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCC---------Ccc---ccch--hHHHhc-------------
Confidence            46899999999999999999999  799999999653221         111   0000  000000             


Q ss_pred             cCChHHHHHHHHhcCCcceeecC-----CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE-EEEe
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDD-----GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL-LKVE  202 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~-----g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~-V~~~  202 (481)
                        +..+.+.... .+......+.     +.-|. ..+...+.+.|.+.+.+.|+++ .+++|+++..++  +.+. +.+.
T Consensus       158 --gl~~~i~~~w-~~~~v~~~~~~~~~~~~~Yg-~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~  230 (529)
T PLN02697        158 --GLEDCIEHVW-RDTIVYLDDDKPIMIGRAYG-RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACE  230 (529)
T ss_pred             --CcHHHHHhhc-CCcEEEecCCceeeccCccc-EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEc
Confidence              1111110000 0000111110     11111 1345778889999999999998 678999998764  3343 3444


Q ss_pred             ecccCceEEEEcCeEEEccCCCh
Q 011610          203 KRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +     +.++.|+.||+|+|.++
T Consensus       231 d-----G~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        231 D-----GRVIPCRLATVASGAAS  248 (529)
T ss_pred             C-----CcEEECCEEEECCCcCh
Confidence            3     56899999999999876

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.04  E-value=6.3e-09  Score=106.76  Aligned_cols=66  Identities=30%  Similarity=0.418  Sum_probs=52.0

Q ss_pred             ChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          160 SSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      +...++..|.+.++++| ..+..++.|..+... . +.+.|.+.+     + .+.|++||+|+|++.  ..++..++
T Consensus       154 ~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~-----g-~i~a~~vv~a~G~~~--~~l~~~~~  220 (387)
T COG0665         154 DPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG-----G-TIEADKVVLAAGAWA--GELAATLG  220 (387)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC-----c-cEEeCEEEEcCchHH--HHHHHhcC
Confidence            45688999999999999 566668999999764 1 457888875     4 499999999999876  45666677

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.04  E-value=4.2e-09  Score=108.48  Aligned_cols=67  Identities=21%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          162 SSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       162 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ..+.+.|.+.+.+ .|++++++++|+++..++  +.+.|++.+     +..+.+|.||.|+|.++   .+.+.+|...
T Consensus       112 ~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~~~~~  179 (395)
T PRK05732        112 HDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDD-----GETLTGRLLVAADGSHS---ALREALGIDW  179 (395)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECC-----CCEEEeCEEEEecCCCh---hhHHhhCCCc
Confidence            4556677777665 489999999999998764  667787765     56799999999999875   4666666653

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.03  E-value=3.4e-09  Score=109.13  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          161 SSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       161 a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ...+.+.|.+.+.+. |++++++++|+++..++  +.+.|++++     +.+++||.||.|+|.++   .+.+.+|..
T Consensus       111 r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vR~~~~~~  178 (391)
T PRK08020        111 NRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLAD-----GEEIQAKLVIGADGANS---QVRQMAGIG  178 (391)
T ss_pred             cHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECC-----CCEEEeCEEEEeCCCCc---hhHHHcCCC
Confidence            456778888888776 99999999999998765  567777765     56899999999999876   366666654

>PRK09126 hypothetical protein; Provisional

Probab=99.03  E-value=1.1e-09  Score=112.83  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          162 SSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       162 ~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ..+.+.|.+.+. ..|++++++++|++++.++  +.+.|++++     +.++.||.||.|+|..+   .+.+.+|..
T Consensus       110 ~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~g~~  176 (392)
T PRK09126        110 HLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLAN-----GRRLTARLLVAADSRFS---ATRRQLGIG  176 (392)
T ss_pred             HHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcC-----CCEEEeCEEEEeCCCCc---hhhHhcCCC
Confidence            456666766664 4699999999999998764  567777765     56899999999999765   345556654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.01  E-value=1.2e-09  Score=111.88  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             ChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ....+.+.|.+.+.+.+ ++++++++|+++..++  +.+.|.+++     + +++||.||.|+|..+   .+.+.++..
T Consensus       102 ~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~-----~-~~~adlvIgADG~~S---~vR~~l~~~  169 (374)
T PRK06617        102 KNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDD-----K-QIKCNLLIICDGANS---KVRSHYFAN  169 (374)
T ss_pred             EHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcC-----C-EEeeCEEEEeCCCCc---hhHHhcCCC
Confidence            45778888998888875 9999999999998765  567777764     4 899999999999875   344445543

>PRK06370 mercuric reductase; Validated

Probab=99.01  E-value=2.5e-09  Score=112.64  Aligned_cols=137  Identities=22%  Similarity=0.230  Sum_probs=78.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .+|||+||||||+|++||+.|++  .|++|+|+|+..+|        |.|  .|..|.+++.+..           .. .
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~G--------G~c--~~~gciPsk~l~~-----------~a-~   59 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLLG--------GTC--VNTGCVPTKTLIA-----------SA-R   59 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCccC--------Cce--eccccCcHHHHHH-----------HH-H
Confidence            46999999999999999999999  79999999987766        677  5556655322211           10 0


Q ss_pred             cCChHHHHHHHHhcCCccee--e-cCCeeeecC-CChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610          129 LHGPMDTMSWFSDHGVELKT--E-DDGRVFPVS-DSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~--~-~~g~~~p~~-~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                      .   ..........|+....  . +...+.... .....+...+...+++. ||+++.++.+.   .++  .  .|.++ 
T Consensus        60 ~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~--~--~v~v~-  128 (463)
T PRK06370         60 A---AHLARRAAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESP--N--TVRVG-  128 (463)
T ss_pred             H---HHHHHHHHhcCcccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccC--C--EEEEC-
Confidence            0   0111112223432110  0 000000000 00001123344556666 99999887652   122  3  34444 


Q ss_pred             cccCceEEEEcCeEEEccCCCh
Q 011610          204 RTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                           +..+.+|+||+|||+.+
T Consensus       129 -----~~~~~~d~lViATGs~p  145 (463)
T PRK06370        129 -----GETLRAKRIFINTGARA  145 (463)
T ss_pred             -----cEEEEeCEEEEcCCCCC
Confidence                 45799999999999865

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.00  E-value=1e-08  Score=105.94  Aligned_cols=160  Identities=18%  Similarity=0.222  Sum_probs=86.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      +||+||||||+|++||+.|++  .|++|+|||+.....+       .|.    ...+. .....+.-. ..+...   .+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~~~~-------~cg----~~i~~-~~l~~~g~~-~~~~~~---~i   62 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPDNAK-------PCG----GAIPL-CMVDEFALP-RDIIDR---RV   62 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCCCCC-------Ccc----ccccH-hhHhhccCc-hhHHHh---hh
Confidence            699999999999999999999  7999999996532211       121    00110 111122110 011100   00


Q ss_pred             ChHHHHHHHHhcCCcceee----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEEEeecc
Q 011610          131 GPMDTMSWFSDHGVELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLKVEKRT  205 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~~~~~~  205 (481)
                      ..   ..+....+......    ..+.++  .-+...+.+.|.+.+.+.|++++.++ +.++.... .++.+.|+.....
T Consensus        63 ~~---~~~~~p~~~~~~~~~~~~~~~~~~--~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~  136 (398)
T TIGR02028        63 TK---MKMISPSNIAVDIGRTLKEHEYIG--MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSD  136 (398)
T ss_pred             ce---eEEecCCceEEEeccCCCCCCcee--eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeecc
Confidence            00   00000011111100    011111  12346667788889999999998775 77775321 1245566543211


Q ss_pred             ----cCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          206 ----MNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       206 ----~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                          .+...+++|+.||.|+|..+   .+++.+|..
T Consensus       137 ~~~~~g~~~~i~a~~VIgADG~~S---~v~~~~g~~  169 (398)
T TIGR02028       137 SGGPSGTRCTLEVDAVIGADGANS---RVAKEIDAG  169 (398)
T ss_pred             ccccCCCccEEEeCEEEECCCcch---HHHHHhCCC
Confidence                02235799999999999875   567777753

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.00  E-value=8.8e-09  Score=105.94  Aligned_cols=68  Identities=9%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ...+.+.|.+.+.+.+...+++++|++++.++  +.+.|++++     +.+++||.||.|+|..+   .+.+.+|...
T Consensus       110 ~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~g~~~  177 (388)
T PRK07494        110 NWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLAD-----GTTLSARLVVGADGRNS---PVREAAGIGV  177 (388)
T ss_pred             hHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECC-----CCEEEEeEEEEecCCCc---hhHHhcCCCc
Confidence            46778888888887753348899999998765  667777765     56899999999999875   3556666654

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.00  E-value=1.2e-08  Score=109.86  Aligned_cols=171  Identities=19%  Similarity=0.213  Sum_probs=91.8

Q ss_pred             CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610           45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      +..+.++||+||||||+|+++|+.|++  .|++|+|||+. .+..      .++....+.   ...++...+.-.. .+.
T Consensus        18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~~~~------~~ra~~l~~---~~~~~l~~lGl~~-~l~   85 (547)
T PRK08132         18 ADDPARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDTLST------GSRAICFAK---RSLEIFDRLGCGE-RMV   85 (547)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCC------CCeEEEEcH---HHHHHHHHcCCcH-HHH
Confidence            344577999999999999999999999  79999999965 3321      122111111   1112222221100 000


Q ss_pred             hhHHhcCChHHHHHHHHhcCCcce--e-ecCCeeeec--CCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeE
Q 011610          124 GSFFSLHGPMDTMSWFSDHGVELK--T-EDDGRVFPV--SDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKF  197 (481)
Q Consensus       124 ~~~l~~~~~~~~~~~~~~~Gi~~~--~-~~~g~~~p~--~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~  197 (481)
                      ... ..+.  ....+... +....  . ...+..+|.  ......+.+.|.+.+.+. +++++++++|++++.++  +.+
T Consensus        86 ~~~-~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v  159 (547)
T PRK08132         86 DKG-VSWN--VGKVFLRD-EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGV  159 (547)
T ss_pred             hhC-ceee--ceeEEeCC-CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEE
Confidence            000 0000  00000000 00000  0 000111110  122345667788887765 79999999999998765  556


Q ss_pred             EEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          198 LLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       198 ~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+++..  .++..+++||.||.|+|+.+.   +.+.+|...
T Consensus       160 ~v~~~~--~~g~~~i~ad~vVgADG~~S~---vR~~lg~~~  195 (547)
T PRK08132        160 TLTVET--PDGPYTLEADWVIACDGARSP---LREMLGLEF  195 (547)
T ss_pred             EEEEEC--CCCcEEEEeCEEEECCCCCcH---HHHHcCCCC
Confidence            555432  112347999999999998763   455667654

>PLN02612 phytoene desaturase

Probab=99.00  E-value=3.6e-07  Score=98.50  Aligned_cols=56  Identities=7%  Similarity=0.043  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ..+.+.|.+.+++.|++|+++++|++|+.++ ++ .+.|++.+     ++.+.||+||+|+..
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~-----G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTN-----GSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECC-----CcEEECCEEEECCCH
Confidence            4567888888888999999999999999865 33 34566654     668999999999863

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.00  E-value=5.6e-09  Score=108.11  Aligned_cols=67  Identities=15%  Similarity=0.210  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          161 SSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       161 a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ...+.+.|.+.+.+. |++++++++|++++.++  +.+.|++.+     +.+++||.||.|+|..+   .+.+.+|..
T Consensus       110 ~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~lvIgADG~~S---~vR~~~~~~  177 (405)
T PRK08850        110 NRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDN-----GQALTAKLVVGADGANS---WLRRQMDIP  177 (405)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECC-----CCEEEeCEEEEeCCCCC---hhHHHcCCC
Confidence            345667788877664 79999999999998765  556777765     56899999999999765   455666654

>PLN02507 glutathione reductase

Probab=98.98  E-value=1.5e-09  Score=115.13  Aligned_cols=142  Identities=21%  Similarity=0.155  Sum_probs=81.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC----------CCCCceEEecCCceeeccCCCcchhHHhhccCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG----------KPLSKVKISGGGRCNVTNGHCADKMILAGHYPR  117 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~----------~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~  117 (481)
                      ..+|||+||||||+|+.||..|++  .|.+|+|+|++          .+        ||.|  .|..|.+++.+..    
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~~~~~~~~~~~~~~--------GGtc--~n~GciPsK~l~~----   86 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSESIGGV--------GGTC--VIRGCVPKKILVY----   86 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccCCCc--------ccee--eccCchhHHHHHH----
Confidence            457999999999999999999999  79999999962          23        3778  6666665332211    


Q ss_pred             CChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeee----c-CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610          118 GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP----V-SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN  192 (481)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p----~-~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~  192 (481)
                             .. .   ..+......+.|+...... ..-++    . ......+...+...+...||+++.+ ++..+.   
T Consensus        87 -------~a-~---~~~~~~~~~~~G~~~~~~~-~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd---  150 (499)
T PLN02507         87 -------GA-T---FGGEFEDAKNYGWEINEKV-DFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVG---  150 (499)
T ss_pred             -------HH-H---HHHHHHHHHhcCcccCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec---
Confidence                   10 0   0011112233444321000 00000    0 0001122233445566789998876 454442   


Q ss_pred             CCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          193 AGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       193 ~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                       .+.+.|++.+   +....+.+|+||+|||+.+
T Consensus       151 -~~~v~V~~~~---g~~~~~~~d~LIIATGs~p  179 (499)
T PLN02507        151 -PNEVEVTQLD---GTKLRYTAKHILIATGSRA  179 (499)
T ss_pred             -CCEEEEEeCC---CcEEEEEcCEEEEecCCCC
Confidence             2456666553   1123699999999999865

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.98  E-value=6.4e-09  Score=111.88  Aligned_cols=112  Identities=26%  Similarity=0.330  Sum_probs=78.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..|||+|||||||||+||+.|++  .|++|+|+|++..|        |.|.....  .      ..|+..         .
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~~G--------G~~~~~~~--i------~~~pg~---------~   55 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDDFG--------GQITITSE--V------VNYPGI---------L   55 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC--------ceEEeccc--c------ccCCCC---------c
Confidence            46999999999999999999999  79999999987665        44432210  0      001000         0


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                   ......+.+.+.+.+++.|++++ +++|+++..++  +.+.|.+.+     
T Consensus        56 -----------------------------~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~-----   98 (555)
T TIGR03143        56 -----------------------------NTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR-----   98 (555)
T ss_pred             -----------------------------CCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC-----
Confidence                                         01123455666677778899985 77899887653  556677653     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                       ..+.++.||+|||+++
T Consensus        99 -g~~~a~~lVlATGa~p  114 (555)
T TIGR03143        99 -GDYKTLAVLIATGASP  114 (555)
T ss_pred             -CEEEEeEEEECCCCcc
Confidence             3689999999999865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.98  E-value=5.5e-09  Score=110.22  Aligned_cols=140  Identities=24%  Similarity=0.282  Sum_probs=79.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .+|||+||||||+|+.||..|++  .|++|+|+|+. .+|        |.|  .|..|.+.+.+...           . 
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~G--------G~c--~n~gciP~K~l~~~-----------a-   58 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLG--------GVC--LNVGCIPSKALLHV-----------A-   58 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCccc--------ccc--cCCCcccHHHHHHH-----------H-
Confidence            46999999999999999999999  79999999975 555        778  66666653222110           0 


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecC-CCh----HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSS----SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a----~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                      ..   ....+.+...|+.....  ..-++.- ..-    ..+...+...+++.||+++.++ +.-+  +  .+.+.|...
T Consensus        59 ~~---~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~--~--~~~v~v~~~  128 (471)
T PRK06467         59 KV---IEEAKALAEHGIVFGEP--KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT--G--GNTLEVTGE  128 (471)
T ss_pred             HH---HHHHhhhhhcCcccCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--c--CCEEEEecC
Confidence            00   00111222334332110  0000000 000    1112233445677899998774 2222  2  245556543


Q ss_pred             ecccCceEEEEcCeEEEccCCCh
Q 011610          203 KRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +   +...++.+|+||+|||+.+
T Consensus       129 ~---g~~~~~~~d~lViATGs~p  148 (471)
T PRK06467        129 D---GKTTVIEFDNAIIAAGSRP  148 (471)
T ss_pred             C---CceEEEEcCEEEEeCCCCC
Confidence            2   1125799999999999865

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.98  E-value=1.6e-09  Score=114.09  Aligned_cols=144  Identities=22%  Similarity=0.241  Sum_probs=76.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .+|||+||||||+|+.||+.|++  .|.+|+|+|+. .+|        |.|  .|..+.+++.+.....        . +
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~G--------G~~--~~~gcipsk~l~~~~~--------~-~   62 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVG--------GGC--THTGTIPSKALREAVL--------R-L   62 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEecccccc--------ccc--cccCCCCHHHHHHHHH--------H-H
Confidence            46999999999999999999999  79999999975 666        667  3444444221111000        0 0


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeee-cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFP-VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p-~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                      ..+  .+. ..+...+.+... +...+.. ...-...+.+.+.+.+++.|++++.++ +..+  +  .+.+.|...+   
T Consensus        63 ~~~--~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~--~~~~~v~~~~---  130 (461)
T PRK05249         63 IGF--NQN-PLYSSYRVKLRI-TFADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFV--D--PHTVEVECPD---  130 (461)
T ss_pred             HHH--hhh-hhhcccCCcCcc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEe--c--CCEEEEEeCC---
Confidence            000  000 000000000000 0000000 000011223345566778899998774 3333  2  2456666543   


Q ss_pred             CceEEEEcCeEEEccCCCh
Q 011610          207 NLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g  225 (481)
                      +....+++|+||+|||+.+
T Consensus       131 g~~~~~~~d~lviATGs~p  149 (461)
T PRK05249        131 GEVETLTADKIVIATGSRP  149 (461)
T ss_pred             CceEEEEcCEEEEcCCCCC
Confidence            1124799999999999865

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.98  E-value=3e-09  Score=104.99  Aligned_cols=173  Identities=20%  Similarity=0.250  Sum_probs=105.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhcc----CCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTV----APKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~----~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      ..+||+|||||||||+||+.|.+.    +..++|+|+||. .+|..++ +|  .+  ......  +++...|......+.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl-SG--av--iep~al--dEL~P~wke~~apl~  147 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL-SG--AV--IEPGAL--DELLPDWKEDGAPLN  147 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee-cc--ee--eccchh--hhhCcchhhcCCccc
Confidence            568999999999999999998763    357899999976 6664332 22  11  111111  244444443332222


Q ss_pred             hhHHhcCChHHHHHHHHhcC---Ccc--eeecCC-eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE
Q 011610          124 GSFFSLHGPMDTMSWFSDHG---VEL--KTEDDG-RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF  197 (481)
Q Consensus       124 ~~~l~~~~~~~~~~~~~~~G---i~~--~~~~~g-~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~  197 (481)
                      ..+    + .|...++...+   ++.  .....| ++.    +-..+++.|-+.+++.||+|+-+..+.++..++++...
T Consensus       148 t~v----T-~d~~~fLt~~~~i~vPv~~pm~NhGNYvv----~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVk  218 (621)
T KOG2415|consen  148 TPV----T-SDKFKFLTGKGRISVPVPSPMDNHGNYVV----SLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVK  218 (621)
T ss_pred             ccc----c-ccceeeeccCceeecCCCcccccCCcEEE----EHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEe
Confidence            111    1 12222332211   111  111111 221    34678999999999999999999999999887634455


Q ss_pred             EEEEeecc----------cCceEEEEcCeEEEccCCChhH-HHHHHHcCCC
Q 011610          198 LLKVEKRT----------MNLVECIEADYLLIASGSSQQG-HRLAAQLGHS  237 (481)
Q Consensus       198 ~V~~~~~~----------~~~~~~i~ad~VIlAtG~~g~g-~~la~~~G~~  237 (481)
                      +|.|.+..          -.++-+++|+..|.|-|..|.- -++.++++++
T Consensus       219 GiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr  269 (621)
T KOG2415|consen  219 GIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR  269 (621)
T ss_pred             eEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc
Confidence            77765410          1235679999999999988754 3455666665

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.98  E-value=2.1e-07  Score=94.08  Aligned_cols=39  Identities=26%  Similarity=0.393  Sum_probs=35.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLS   88 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~   88 (481)
                      ....||||||+|.+||+||++|.+  .|++|+|+| +++.|+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GG   44 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGG   44 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCc
Confidence            457899999999999999999999  899999999 788874

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.97  E-value=3.7e-09  Score=108.98  Aligned_cols=59  Identities=15%  Similarity=0.099  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          161 SSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       161 a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ...+.+.|.+.+.+.+ ++++++++|+++..++  +.+.|++.+     +.++.||.||.|+|.++.
T Consensus       108 r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        108 RADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQ-----GNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcC-----CCEEecCEEEECCCcChH
Confidence            4567788888887765 9999999999998764  556777665     567999999999998763

>PRK14694 putative mercuric reductase; Provisional

Probab=98.97  E-value=4.3e-09  Score=111.07  Aligned_cols=49  Identities=27%  Similarity=0.507  Sum_probs=41.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcc
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD  107 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~  107 (481)
                      .+..|||+||||||+|++||..|++  .|.+|+|+|++.+|        |.|  .|..|.+
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~~~G--------Gtc--~n~GciP   51 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATE--RGARVTLIERGTIG--------GTC--VNIGCVP   51 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEccccc--------cce--ecCCccc
Confidence            4568999999999999999999999  78999999988776        667  4666655

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.97  E-value=1.4e-08  Score=104.58  Aligned_cols=61  Identities=11%  Similarity=0.080  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..+.+.|.+.+.+.|++++++++|++++..+ ++...|++..  ++...+++||.||.|+|..+
T Consensus       103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~-~~~~~V~~~~--~G~~~~i~ad~vVgADG~~S  163 (392)
T PRK08243        103 TEVTRDLMAARLAAGGPIRFEASDVALHDFD-SDRPYVTYEK--DGEEHRLDCDFIAGCDGFHG  163 (392)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeeeEEEEEecC-CCceEEEEEc--CCeEEEEEeCEEEECCCCCC
Confidence            4566778877888899999999999997622 2445566531  12235799999999999876

>PRK07045 putative monooxygenase; Reviewed

Probab=98.95  E-value=9.2e-09  Score=105.83  Aligned_cols=154  Identities=15%  Similarity=0.123  Sum_probs=84.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+||+||||||+|+++|+.|++  .|++|+|+|+....+.   .+++ ..+...    .........-     ...+..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~---~~~~-~~l~~~----~~~~L~~lGl-----~~~~~~   68 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARNRA---QNGA-DLLKPS----GIGVVRAMGL-----LDDVFA   68 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcccC---CCcc-cccCcc----HHHHHHHcCC-----HHHHHh
Confidence            45899999999999999999999  7999999996532210   0000 001110    0011111110     000000


Q ss_pred             cCC-hHHHHHHHHhcCCccee------ecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCC-eEEE
Q 011610          129 LHG-PMDTMSWFSDHGVELKT------EDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGR-KFLL  199 (481)
Q Consensus       129 ~~~-~~~~~~~~~~~Gi~~~~------~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~-~~~V  199 (481)
                      .-. ..+...++. .|-....      ...+.  ........+.+.|.+.+. ..|++++++++|++++.++ ++ .+.|
T Consensus        69 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~--~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v  144 (388)
T PRK07045         69 AGGLRRDAMRLYH-DKELIASLDYRSASALGY--FILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSV  144 (388)
T ss_pred             cccccccceEEec-CCcEEEEecCCccccCCc--eEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEE
Confidence            000 000000000 0100000      00011  011224567788888775 4689999999999998765 34 3467


Q ss_pred             EEeecccCceEEEEcCeEEEccCCChh
Q 011610          200 KVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       200 ~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ++.+     +.++.+|.||.|+|..+.
T Consensus       145 ~~~~-----g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        145 TLSD-----GERVAPTVLVGADGARSM  166 (388)
T ss_pred             EeCC-----CCEEECCEEEECCCCChH
Confidence            7665     568999999999998763

>TIGR02053 MerA mercuric reductase

Probab=98.95  E-value=7.7e-09  Score=109.00  Aligned_cols=60  Identities=23%  Similarity=0.257  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ++...+.+.+++.||+++++++|+++..++  +.+.+.+..  .+++.++.+|.||+|+|..+.
T Consensus       208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~  267 (463)
T TIGR02053       208 EISAAVEEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEK--PGGQGEVEADELLVATGRRPN  267 (463)
T ss_pred             HHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEe--CCCceEEEeCEEEEeECCCcC
Confidence            445567777888999999999999998754  445555432  122467999999999997654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.95  E-value=1.2e-08  Score=106.89  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +|||+||||||+|++||..|++  .|.+|+|+|+..
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCC
Confidence            5999999999999999999999  799999999763

>PLN02985 squalene monooxygenase

Probab=98.94  E-value=7.1e-09  Score=110.16  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCC
Q 011610          161 SSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH  236 (481)
Q Consensus       161 a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~  236 (481)
                      ...+.+.|.+.+.+. +|+++.+ +|+++..++ +...+|++.. .++...+++||.||.|+|..+   .+.+.++.
T Consensus       146 r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S---~vR~~l~~  216 (514)
T PLN02985        146 NGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKN-SAGEETTALAPLTVVCDGCYS---NLRRSLND  216 (514)
T ss_pred             cHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEc-CCCCEEEEECCEEEECCCCch---HHHHHhcc
Confidence            457888888888765 6998865 677776554 3334565532 122234678999999999875   44455553

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.94  E-value=3e-09  Score=109.31  Aligned_cols=66  Identities=14%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          162 SSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       162 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ..+...|.+.+.+ .+++++++++|++++.++  +.+.|++.+     +.+++||.||.|+|..+   .+.+.+|..
T Consensus       110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~-----g~~~~~~lvIgADG~~S---~vR~~~gi~  176 (384)
T PRK08849        110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLES-----GAEIEAKWVIGADGANS---QVRQLAGIG  176 (384)
T ss_pred             HHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECC-----CCEEEeeEEEEecCCCc---hhHHhcCCC
Confidence            3456677777655 479999999999998865  557777775     67899999999999875   345556644

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.7e-08  Score=90.76  Aligned_cols=117  Identities=24%  Similarity=0.374  Sum_probs=81.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ...|+|||.||++-.||+.+++  ..++.+|+|-.-.+.   +..||+.  +.....      +.|+             
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~~~~~---i~pGGQL--tTTT~v------eNfP-------------   61 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGMMANG---IAPGGQL--TTTTDV------ENFP-------------   61 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhh--cccCceEEeeeeccC---cCCCcee--eeeecc------ccCC-------------
Confidence            4589999999999999999999  789999999322110   0002322  211100      1121             


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                              -||......++++.+.+..++.|.+|+.+ .|.++....  ..|.+.++      .
T Consensus        62 ------------------------GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~l~td------~  108 (322)
T KOG0404|consen   62 ------------------------GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPFKLWTD------A  108 (322)
T ss_pred             ------------------------CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCeEEEec------C
Confidence                                    12333345667788888888899998766 688887764  78988887      4


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      +.+.||.||+|||+..
T Consensus       109 ~~v~~~avI~atGAsA  124 (322)
T KOG0404|consen  109 RPVTADAVILATGASA  124 (322)
T ss_pred             CceeeeeEEEecccce
Confidence            7899999999999753

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.93  E-value=7.4e-09  Score=109.16  Aligned_cols=139  Identities=24%  Similarity=0.265  Sum_probs=78.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +|||+||||||+|+.||+.|++  .|++|+|+|+ +.+|        |.|  .|..|.+++.+....     ..+     
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~G--------G~c--~~~gciPsK~l~~~~-----~~~-----   60 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLG--------GTC--LNVGCMPSKALLHAS-----ELY-----   60 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCcee--------eee--ccCcccccHHHHHHh-----HHH-----
Confidence            4899999999999999999999  7999999996 5666        777  666676633222110     000     


Q ss_pred             cCChHHHHH-HHHhcCCcceeecCCeeeecC-C----ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610          129 LHGPMDTMS-WFSDHGVELKTEDDGRVFPVS-D----SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       129 ~~~~~~~~~-~~~~~Gi~~~~~~~g~~~p~~-~----~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                          +.... .+...|+....   ..-+..- .    ....+...+...+++.+|+++.+..  .+.  + .+.+.|...
T Consensus        61 ----~~~~~~~~~~~gi~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~--~-~~~v~v~~~  128 (466)
T PRK06115         61 ----EAASGGEFAHLGIEVKP---TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLD--G-VGKVVVKAE  128 (466)
T ss_pred             ----HHHhhhhhhhcCccccC---ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEc--c-CCEEEEEcC
Confidence                00110 12234443210   0000000 0    0011122344455667898887652  332  2 244555544


Q ss_pred             ecccCceEEEEcCeEEEccCCCh
Q 011610          203 KRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +   ++..++++|+||+|||+.+
T Consensus       129 ~---g~~~~~~~d~lVIATGs~p  148 (466)
T PRK06115        129 D---GSETQLEAKDIVIATGSEP  148 (466)
T ss_pred             C---CceEEEEeCEEEEeCCCCC
Confidence            3   1124799999999999865

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.93  E-value=1.1e-08  Score=105.34  Aligned_cols=136  Identities=21%  Similarity=0.188  Sum_probs=81.4

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ||+|||||++|+++|+.|++  .|++|+|||+. ..+..      -.+.+... ..+      ...  -.....   ..+
T Consensus         1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~~------~~~~~~~~-~~~------~~~--~~~~~~---~~~   60 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGN------HTYGVWDD-DLS------DLG--LADCVE---HVW   60 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCCC------ccccccHh-hhh------hhc--hhhHHh---hcC
Confidence            89999999999999999998  79999999965 44310      00100000 000      000  000000   000


Q ss_pred             ChHHHHHHHHhcCCcceee----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          131 GPMDTMSWFSDHGVELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                      ..          ...+...    .....|. ..+...+.+.|.+.+.+.|++++ .++|+++..++ ++.+.|++++   
T Consensus        61 ~~----------~~~~~~~~~~~~~~~~~~-~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~---  124 (388)
T TIGR01790        61 PD----------VYEYRFPKQPRKLGTAYG-SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAG---  124 (388)
T ss_pred             CC----------ceEEecCCcchhcCCcee-EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCC---
Confidence            00          0000000    0011111 13567888999999988899986 56888887763 3567777765   


Q ss_pred             CceEEEEcCeEEEccCCCh
Q 011610          207 NLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g  225 (481)
                        +.+++|+.||.|+|..+
T Consensus       125 --g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790       125 --GQRIQARLVIDARGFGP  141 (388)
T ss_pred             --CCEEEeCEEEECCCCch
Confidence              56899999999999764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02487 zeta-carotene desaturase

Probab=98.93  E-value=8.7e-07  Score=94.90  Aligned_cols=69  Identities=16%  Similarity=0.043  Sum_probs=49.5

Q ss_pred             eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CC---eEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GR---KFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      .||...-...+.+.+.+.+++.|++|++++.|.+|..+.+ ++   .++|++.+  .+.+..+.+|.||+|++.+
T Consensus       287 ~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        287 RMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             eecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHH
Confidence            3444444446889999999999999999999999998631 12   34666631  1124578999999999854

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.93  E-value=1.5e-08  Score=108.24  Aligned_cols=114  Identities=19%  Similarity=0.247  Sum_probs=83.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ...+||+||||||+|++||.+|++  .|++|+|+|.. +|        |++.-+..  .+      .+.           
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~-~G--------G~~~~~~~--~~------~~~-----------  258 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER-FG--------GQVLDTMG--IE------NFI-----------  258 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC-CC--------CeeeccCc--cc------ccC-----------
Confidence            457999999999999999999999  79999999853 44        44421110  00      000           


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                                     +.           | ......+.+.+.+.+++.|++++++++|.++...+  +.+.|.+.+    
T Consensus       259 ---------------~~-----------~-~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~----  305 (517)
T PRK15317        259 ---------------SV-----------P-ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELAN----  305 (517)
T ss_pred             ---------------CC-----------C-CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECC----
Confidence                           00           0 01234567788888889999999999999998764  667777764    


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                       +..+.+|.||+|||+.+
T Consensus       306 -g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        306 -GAVLKAKTVILATGARW  322 (517)
T ss_pred             -CCEEEcCEEEECCCCCc
Confidence             56799999999999854

>PRK11445 putative oxidoreductase; Provisional

Probab=98.92  E-value=3.1e-08  Score=100.61  Aligned_cols=61  Identities=13%  Similarity=0.101  Sum_probs=43.7

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +...+.+.|.+ +...|+++++++.|++++.++  +.+.|++..  ++...+++||.||.|+|+.+
T Consensus        97 ~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~--~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445         97 DRHKFDLWLKS-LIPASVEVYHNSLCRKIWRED--DGYHVIFRA--DGWEQHITARYLVGADGANS  157 (351)
T ss_pred             cHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcC--CEEEEEEec--CCcEEEEEeCEEEECCCCCc
Confidence            34555555655 456789999999999998765  567776531  12123799999999999876

>PRK07588 hypothetical protein; Provisional

Probab=98.92  E-value=6.7e-09  Score=106.96  Aligned_cols=58  Identities=12%  Similarity=0.100  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ...+.+.|.+.+. .+++++++++|++++.++  +.+.|++++     +..+++|.||.|+|.++.
T Consensus       102 r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        102 RGDLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVRVTFER-----GTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             HHHHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEEEEECC-----CCEEEeCEEEECCCCCcc
Confidence            3456666666554 489999999999998765  667777765     667899999999998653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.91  E-value=1.5e-08  Score=108.09  Aligned_cols=114  Identities=20%  Similarity=0.282  Sum_probs=80.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ...+||+||||||+|++||+.|++  .|++|+|+|. .+|        |++.  +....      ..+.           
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~-~~G--------G~~~--~~~~~------~~~~-----------  259 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAE-RIG--------GQVK--DTVGI------ENLI-----------  259 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec-CCC--------Cccc--cCcCc------cccc-----------
Confidence            456999999999999999999999  7999999984 233        3331  10000      0000           


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                                     +.           | ......+.+.+.+.+++.|++++.+++|.++..++  +.+.|.+.+    
T Consensus       260 ---------------~~-----------~-~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~----  306 (515)
T TIGR03140       260 ---------------SV-----------P-YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED--GLIVVTLES----  306 (515)
T ss_pred             ---------------cc-----------C-CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECC----
Confidence                           00           0 01234456677777888899999999999998764  567777764    


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                       +..+.+|++|+|||+.+
T Consensus       307 -g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       307 -GEVLKAKSVIVATGARW  323 (515)
T ss_pred             -CCEEEeCEEEECCCCCc
Confidence             56799999999999753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06996 hypothetical protein; Provisional

Probab=98.91  E-value=1.1e-08  Score=105.78  Aligned_cols=161  Identities=13%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccC--CCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVA--PKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~--~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      ..++.+||+||||||+|+++|+.|++.+  .|++|+|+|+......   .+..|....+   .....+.+.+.-... ..
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~---~~~~r~~~l~---~~~~~~L~~lg~~~~-~~   79 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS---ANDPRAIALS---HGSRVLLETLGAWPA-DA   79 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC---CCCceEEEec---HHHHHHHHhCCCchh-cC
Confidence            4556799999999999999999999832  1367999997533210   0011211111   111122222221100 00


Q ss_pred             hhH--HhcCChHHHHHHHHhcC-CcceeecCCe-eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEE
Q 011610          124 GSF--FSLHGPMDTMSWFSDHG-VELKTEDDGR-VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLL  199 (481)
Q Consensus       124 ~~~--l~~~~~~~~~~~~~~~G-i~~~~~~~g~-~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V  199 (481)
                      ...  +...+. .      ..| ..+...+.+. .+....+...+.+.|.+.+.+.|+++++++++++++.++  +.+.+
T Consensus        80 ~~~~~~~~~~~-~------~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v  150 (398)
T PRK06996         80 TPIEHIHVSQR-G------HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTL  150 (398)
T ss_pred             CcccEEEEecC-C------CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEE
Confidence            000  000000 0      000 0000000000 000112346788899999999999999999999997764  56777


Q ss_pred             EEeecccCceEEEEcCeEEEccCCC
Q 011610          200 KVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       200 ~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      ++.+  .+++.+++||.||.|+|+.
T Consensus       151 ~~~~--~~g~~~i~a~lvIgADG~~  173 (398)
T PRK06996        151 ALGT--PQGARTLRARIAVQAEGGL  173 (398)
T ss_pred             EECC--CCcceEEeeeEEEECCCCC
Confidence            6653  1112689999999999963

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.91  E-value=1.4e-08  Score=104.97  Aligned_cols=144  Identities=22%  Similarity=0.274  Sum_probs=91.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      +..+|+|||||||||.+|.+|.+  .|++|+++||. .+|        |-++.+......           ...+++.+ 
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iG--------GlW~y~~~~~~~-----------~ss~Y~~l-   62 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIG--------GLWKYTENVEVV-----------HSSVYKSL-   62 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCcc--------ceEeecCccccc-----------ccchhhhh-
Confidence            46799999999999999999999  79999999965 666        444443211100           00111111 


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVEKRT  205 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~V~~~~~~  205 (481)
                      ..-.+.+.+.+   ...++... ....||   ....++++|...|++.++  .|.++++|..+.... ++.|.|.+.+..
T Consensus        63 ~tn~pKe~~~~---~dfpf~~~-~~~~~p---~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~-~gkW~V~~~~~~  134 (448)
T KOG1399|consen   63 RTNLPKEMMGY---SDFPFPER-DPRYFP---SHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID-KGKWRVTTKDNG  134 (448)
T ss_pred             hccCChhhhcC---CCCCCccc-CcccCC---CHHHHHHHHHHHHHhcChhhheEecccEEEEeecc-CCceeEEEecCC
Confidence            11112222211   11222211 123333   456899999999998875  688999999998764 268999887511


Q ss_pred             cCceEEEEcCeEEEccCC
Q 011610          206 MNLVECIEADYLLIASGS  223 (481)
Q Consensus       206 ~~~~~~i~ad~VIlAtG~  223 (481)
                      .. ..+..+|.||+|||-
T Consensus       135 ~~-~~~~ifd~VvVctGh  151 (448)
T KOG1399|consen  135 TQ-IEEEIFDAVVVCTGH  151 (448)
T ss_pred             cc-eeEEEeeEEEEcccC
Confidence            11 257889999999994

>PRK07538 hypothetical protein; Provisional

Probab=98.91  E-value=1.6e-08  Score=105.09  Aligned_cols=158  Identities=20%  Similarity=0.252  Sum_probs=82.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      +||+|||||++|+++|+.|++  .|++|+|+|+....+.   .|.+ .++..    ........+.- ...+...   ..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~---~g~g-i~l~p----~~~~~L~~lgl-~~~l~~~---~~   66 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELRP---LGVG-INLLP----HAVRELAELGL-LDALDAI---GI   66 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCcccc---cCcc-eeeCc----hHHHHHHHCCC-HHHHHhh---CC
Confidence            489999999999999999999  7999999996532111   0111 11111    00011111110 0000000   00


Q ss_pred             ChHHHHHHHHhcCCcceeec----CCeeeec-CCChHHHHHHHHHHHHh-CC-CEEEcCceEEEEEecCCCCeEEEEEee
Q 011610          131 GPMDTMSWFSDHGVELKTED----DGRVFPV-SDSSSSVIDCLLTEAKH-RG-VVLQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~----~g~~~p~-~~~a~~~~~~l~~~~~~-~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                      .. ....++...|.......    .+..+|. ......+.+.|.+.+.+ .| +.|+++++|++++.++  +.+.+.+.+
T Consensus        67 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~--~~~~~~~~~  143 (413)
T PRK07538         67 RT-RELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA--DVTVVFLGD  143 (413)
T ss_pred             CC-cceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC--CceEEEEec
Confidence            00 00000011111111000    0111111 12355677788887755 46 4699999999998765  334444443


Q ss_pred             cccCceEEEEcCeEEEccCCCh
Q 011610          204 RTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ...+...+++||.||.|+|..+
T Consensus       144 ~~~g~~~~~~adlvIgADG~~S  165 (413)
T PRK07538        144 RAGGDLVSVRGDVLIGADGIHS  165 (413)
T ss_pred             cCCCccceEEeeEEEECCCCCH
Confidence            2223346899999999999865

>PRK07236 hypothetical protein; Provisional

Probab=98.89  E-value=5.2e-08  Score=100.20  Aligned_cols=149  Identities=16%  Similarity=0.191  Sum_probs=79.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      +.+||+|||||++|+++|+.|++  .|++|+|+|+.. ....   .|.| ..+..    ..........-... . ..  
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~---~g~g-i~l~~----~~~~~l~~lg~~~~-~-~~--   70 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDG---RGAG-IVLQP----ELLRALAEAGVALP-A-DI--   70 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCC---CCce-eEeCH----HHHHHHHHcCCCcc-c-cc--
Confidence            35899999999999999999999  799999999653 2110   0101 00000    00011111110000 0 00  


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeec-CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPV-SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                       .... ....++...|-....    ..++. ......+.+.|.+.+  .+++++++++|++++.++  +.+.|++.+   
T Consensus        71 -~~~~-~~~~~~~~~g~~~~~----~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~---  137 (386)
T PRK07236         71 -GVPS-RERIYLDRDGRVVQR----RPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDG--DRVTARFAD---  137 (386)
T ss_pred             -ccCc-cceEEEeCCCCEeec----cCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEEEEECC---
Confidence             0000 000000001100000    00010 012234445555433  346899999999998765  567777776   


Q ss_pred             CceEEEEcCeEEEccCCChh
Q 011610          207 NLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g~  226 (481)
                        +.+++||.||.|+|..+.
T Consensus       138 --g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236        138 --GRRETADLLVGADGGRST  155 (386)
T ss_pred             --CCEEEeCEEEECCCCCch
Confidence              678999999999998764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.89  E-value=2.2e-08  Score=104.91  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .|||+|||||++|+.||+.|++  .|.+|+|+|+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~   35 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQS   35 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCC
Confidence            5899999999999999999999  78999999976

>PRK06753 hypothetical protein; Provisional

Probab=98.89  E-value=2.6e-08  Score=101.90  Aligned_cols=64  Identities=20%  Similarity=0.243  Sum_probs=46.8

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      ....+.+.|.+.+.  +.+|+++++|++++.++  +.+.|++.+     +.++.+|.||.|+|..+   .+.+.++
T Consensus        96 ~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~~~~vigadG~~S---~vR~~~~  159 (373)
T PRK06753         96 HRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKVTIHFAD-----GESEAFDLCIGADGIHS---KVRQSVN  159 (373)
T ss_pred             cHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcEEEEECC-----CCEEecCEEEECCCcch---HHHHHhC
Confidence            34566677766654  46899999999998664  667787765     67899999999999765   3444444

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.88  E-value=1.4e-08  Score=107.98  Aligned_cols=142  Identities=23%  Similarity=0.258  Sum_probs=83.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||++||++|..|.+  .|++|+++|+. .+|        |.++..+... +  .....|..-.....+. +..
T Consensus         2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iG--------G~W~~~~~~~-~--g~~~~y~sl~~n~sk~-~~~   67 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIG--------GLWRYTENPE-D--GRSSVYDSLHTNTSKE-MMA   67 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSS--------GGGCHSTTCC-C--SEGGGSTT-B-SS-GG-GSC
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCC--------ccCeeCCcCC-C--CccccccceEEeeCch-Hhc
Confidence            579999999999999999998  79999999965 776        5454432110 0  0001111100000000 011


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCC---CCeEEEEEeec
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNA---GRKFLLKVEKR  204 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~---~~~~~V~~~~~  204 (481)
                      |+           ..++  .++-..||   ...++.++|...+++.++  .|+++|+|+++++.++   .+.|.|++.+ 
T Consensus        68 fs-----------dfp~--p~~~p~f~---~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-  130 (531)
T PF00743_consen   68 FS-----------DFPF--PEDYPDFP---SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-  130 (531)
T ss_dssp             CT-----------TS-H--CCCCSSSE---BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-
T ss_pred             CC-----------CcCC--CCCCCCCC---CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-
Confidence            11           0011  11112243   467899999999998876  6999999999987541   1468888753 


Q ss_pred             ccCceEEEEcCeEEEccCCC
Q 011610          205 TMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~  224 (481)
                       .+...+-..|+||+|||..
T Consensus       131 -~g~~~~~~fD~VvvatG~~  149 (531)
T PF00743_consen  131 -DGKEETEEFDAVVVATGHF  149 (531)
T ss_dssp             -TTEEEEEEECEEEEEE-SS
T ss_pred             -CCeEEEEEeCeEEEcCCCc
Confidence             2333455689999999953

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.88  E-value=5.1e-08  Score=99.46  Aligned_cols=51  Identities=20%  Similarity=0.170  Sum_probs=38.9

Q ss_pred             cccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       426 t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                      +|+.+.+||+|++|++..+....-.-..++|...|+++++++++..+.+.+
T Consensus       265 ~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~  315 (364)
T TIGR03169       265 TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPL  315 (364)
T ss_pred             ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCC
Confidence            577778999999998887643322345688999999999999877655544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02546 glutathione reductase

Probab=98.88  E-value=4.7e-09  Score=112.31  Aligned_cols=144  Identities=19%  Similarity=0.202  Sum_probs=80.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCce-EEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKV-KISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~-~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      .+|||+|||+|++|+.||..|++  .|.+|+|+|++. ..++- .-.-||.|  .|..|.+.+.+...     ..+    
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~~~~~~~~~~~GGtC--~n~GCiPsK~l~~a-----a~~----  144 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASN--FGASAAVCELPFATISSDTLGGVGGTC--VLRGCVPKKLLVYA-----SKY----  144 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCccCcc--cCcchHHHHHHHHH-----HHH----
Confidence            35899999999999999999999  799999999631 00000 00014788  78888774333211     000    


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeec-----CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEE
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPV-----SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKV  201 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-----~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~  201 (481)
                            ....+-...+|+...... ..-|+.     ...-..+.+.+.+.+++.||+++.+ +++.+.  .  +  .|.+
T Consensus       145 ------~~~~~~~~~~g~~~~~~~-~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd--~--~--~V~v  210 (558)
T PLN02546        145 ------SHEFEESRGFGWKYETEP-KHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVD--P--H--TVDV  210 (558)
T ss_pred             ------HHHHHhhhhcCcccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEcc--C--C--EEEE
Confidence                  000011122343221000 000000     0011233455666677889999866 333332  1  2  3444


Q ss_pred             eecccCceEEEEcCeEEEccCCCh
Q 011610          202 EKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       202 ~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +      +..+.+|+||+|||+.+
T Consensus       211 ~------G~~~~~D~LVIATGs~p  228 (558)
T PLN02546        211 D------GKLYTARNILIAVGGRP  228 (558)
T ss_pred             C------CEEEECCEEEEeCCCCC
Confidence            4      56799999999999865

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.88  E-value=4.8e-09  Score=109.73  Aligned_cols=70  Identities=9%  Similarity=0.128  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHhCC---CEEEcCceEEEEEec-----CCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHH
Q 011610          161 SSSVIDCLLTEAKHRG---VVLQTGKVVTTASSD-----NAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAA  232 (481)
Q Consensus       161 a~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~-----~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~  232 (481)
                      ...+.+.|.+.+.+.+   ++++++++|++++.+     +++..+.|++.+     +++++||.||.|+|..+   .+-+
T Consensus       116 ~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~-----g~~i~a~llVgADG~~S---~vR~  187 (437)
T TIGR01989       116 NDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSD-----GQVLYTKLLIGADGSNS---NVRK  187 (437)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcC-----CCEEEeeEEEEecCCCC---hhHH
Confidence            4567788888888765   999999999999752     112456777765     67899999999999876   3455


Q ss_pred             HcCCCc
Q 011610          233 QLGHSI  238 (481)
Q Consensus       233 ~~G~~i  238 (481)
                      .+|+..
T Consensus       188 ~~gi~~  193 (437)
T TIGR01989       188 AANIDT  193 (437)
T ss_pred             HcCCCc
Confidence            667654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.88  E-value=5.5e-08  Score=98.65  Aligned_cols=74  Identities=15%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          161 SSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       161 a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      -..+.+.|.+.+.+. |++++++++|++|++.+ ++.|.|++.+..++...+++|+.|++.+|+..  ..++++.|++
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a--L~LLqksgi~  254 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA--LPLLQKSGIP  254 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCCEEEEEEecCCCCeEEEECCEEEECCchHh--HHHHHHcCCh
Confidence            345667788888777 99999999999999987 67799998765556678999999999988754  7889988875

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.87  E-value=1.7e-08  Score=90.23  Aligned_cols=145  Identities=19%  Similarity=0.300  Sum_probs=80.0

Q ss_pred             EEECCchHHHHHHHHHhcc---CCCCcEEEEeCCCCCCceEE-ecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           54 VVVGGGAAGVYGAIRAKTV---APKLNVVIIEKGKPLSKVKI-SGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        54 vIIGgG~aGl~aA~~la~~---~~g~~V~llE~~~~g~k~~~-sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      +|||+|++|++++.+|.+.   ....+|+|+|+...|..... +....+.+.|..            ..  .+  +. ..
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~------------a~--~~--s~-~~   63 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTP------------AD--QM--SL-FP   63 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhccc------------cc--cc--cc-cc
Confidence            5999999999999999985   24788999998665621100 000111122211            00  00  00 01


Q ss_pred             CCh-HHHHHHHHhcCCcceeecCCeeee-cCCChH---HHHHHHHHHHHhCCCEEE-cCceEEEEEecCCCCeEEEEEee
Q 011610          130 HGP-MDTMSWFSDHGVELKTEDDGRVFP-VSDSSS---SVIDCLLTEAKHRGVVLQ-TGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       130 ~~~-~~~~~~~~~~Gi~~~~~~~g~~~p-~~~~a~---~~~~~l~~~~~~~Gv~i~-~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                      -.+ .++.+|+++.+.+.........|+ ...-..   +..+.+.+.+ ..|++|. ...+|++|...+  +.+.|.+.+
T Consensus        64 ~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~  140 (156)
T PF13454_consen   64 DDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARL-PAGITVRHVRAEVVDIRRDD--DGYRVVTAD  140 (156)
T ss_pred             ccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhh-cCCcEEEEEeeEEEEEEEcC--CcEEEEECC
Confidence            112 467788888764100011112222 111111   1222222223 3465544 356899999876  567887776


Q ss_pred             cccCceEEEEcCeEEEccCC
Q 011610          204 RTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~  223 (481)
                           +..+.+|.||+|||.
T Consensus       141 -----g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  141 -----GQSIRADAVVLATGH  155 (156)
T ss_pred             -----CCEEEeCEEEECCCC
Confidence                 678999999999994

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.87  E-value=2.5e-08  Score=105.05  Aligned_cols=138  Identities=25%  Similarity=0.305  Sum_probs=76.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      +|||+|||||++|+.||+.|++  .|.+|+|+|++.+|        |.|  .|..+.+.+.+...    . .+.      
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~~~~G--------G~~--~~~gc~Psk~l~~~----~-~~~------   57 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEKEYLG--------GTC--LNVGCIPTKALLHS----A-EVY------   57 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC--------Cce--eecCccchHHHHHH----h-hHH------
Confidence            4899999999999999999999  79999999997666        666  34444442111110    0 000      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecC-CCh----HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSS----SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a----~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                         .... .+...|++.....  ..++.- ...    ..+...+...+++.|++++.+..+ .+  +.  +.+.|...+ 
T Consensus        58 ---~~~~-~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~--~~--~~~~v~~~~-  125 (461)
T TIGR01350        58 ---DEIK-HAKDYGIEVENVS--VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAK-FL--DP--GTVLVTGEN-  125 (461)
T ss_pred             ---HHHH-HHHhcCCCCCCCc--CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec--cC--CEEEEecCC-
Confidence               0111 1233444321100  000000 000    111223344556779998876433 22  22  445555442 


Q ss_pred             ccCceEEEEcCeEEEccCCCh
Q 011610          205 TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g  225 (481)
                         +..++++|+||+|||+.+
T Consensus       126 ---g~~~~~~d~lVlAtG~~p  143 (461)
T TIGR01350       126 ---GEETLTAKNIIIATGSRP  143 (461)
T ss_pred             ---CcEEEEeCEEEEcCCCCC
Confidence               125799999999999865

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK13748 putative mercuric reductase; Provisional

Probab=98.87  E-value=4.2e-08  Score=105.93  Aligned_cols=68  Identities=16%  Similarity=0.300  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ++.+.+.+.+++.||++++++.|.+++.++  +.+.+.+.+      .++.+|.||+|+|..+....+ ++..|+++
T Consensus       311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~------~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~  379 (561)
T PRK13748        311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGH------GELRADKLLVATGRAPNTRSLALDAAGVTV  379 (561)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecC------CeEEeCEEEEccCCCcCCCCcCchhcCceE
Confidence            455667788889999999999999998654  455565543      369999999999977643222 34455544

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.86  E-value=4.1e-08  Score=103.49  Aligned_cols=143  Identities=18%  Similarity=0.266  Sum_probs=82.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      +.||+|||+|++|+.+|..|++  .|.+|+|+|++..|        |.|  .|..|.+.+.+..           ..   
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~g--------G~c--~~~gciPsK~l~~-----------~a---   54 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGLG--------GAA--VLTDCVPSKTLIA-----------TA---   54 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCC--------Ccc--cccCCcchHHHHH-----------HH---
Confidence            3589999999999999999999  79999999987765        788  4556655322221           10   


Q ss_pred             CChHHHHHHHHhcCCccee-ecCCeeeecC-CC----hHHHHHHHHHHHHhCCCEEEcCceEEEEE--ecCCCCeEEEEE
Q 011610          130 HGPMDTMSWFSDHGVELKT-EDDGRVFPVS-DS----SSSVIDCLLTEAKHRGVVLQTGKVVTTAS--SDNAGRKFLLKV  201 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~-~~~g~~~p~~-~~----a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~--~~~~~~~~~V~~  201 (481)
                       ...+..+.....|+.... +....-++.- ..    ...+.+.+.+.+++.||+++.++ +..+.  .++  +.+.|.+
T Consensus        55 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~--~~v~V~~  130 (466)
T PRK07845         55 -EVRTELRRAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGP--HRVKVTT  130 (466)
T ss_pred             -HHHHHHHHHHhCCcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCC--CEEEEEe
Confidence             000111123334443210 0000000000 00    11123345566778899998774 33332  222  5566665


Q ss_pred             eecccCceEEEEcCeEEEccCCCh
Q 011610          202 EKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       202 ~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .+   +...++.+|+||+|||+.+
T Consensus       131 ~~---g~~~~~~~d~lViATGs~p  151 (466)
T PRK07845        131 AD---GGEETLDADVVLIATGASP  151 (466)
T ss_pred             CC---CceEEEecCEEEEcCCCCC
Confidence            43   1113799999999999865

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.86  E-value=3.9e-08  Score=110.02  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .++.|++++.+++|+.+..+.    ..|.+.+     +..+.+|++|+|||+.+
T Consensus        69 ~~~~gI~~~~g~~V~~Id~~~----~~V~~~~-----G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         69 YEKHGIKVLVGERAITINRQE----KVIHSSA-----GRTVFYDKLIMATGSYP  113 (847)
T ss_pred             HHhCCCEEEcCCEEEEEeCCC----cEEEECC-----CcEEECCEEEECCCCCc
Confidence            345799999999999997542    3455654     56899999999999865

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.85  E-value=6.1e-08  Score=108.27  Aligned_cols=45  Identities=24%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +++.|++++.+++|+.|..+.    ..|.+.+     +.++.+|++|+|||+.+
T Consensus        64 ~~~~gv~~~~g~~V~~Id~~~----k~V~~~~-----g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        64 YEKHGITLYTGETVIQIDTDQ----KQVITDA-----GRTLSYDKLILATGSYP  108 (785)
T ss_pred             HHHCCCEEEcCCeEEEEECCC----CEEEECC-----CcEeeCCEEEECCCCCc
Confidence            356799999999999997643    3466665     66899999999999865

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.85  E-value=3.8e-08  Score=104.22  Aligned_cols=65  Identities=23%  Similarity=0.370  Sum_probs=52.4

Q ss_pred             CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          152 GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       152 g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      |..||. .....+.++|.+.++++|++|+++++|.+|..++ +..+++++.+     +..+.+|.||.+..-
T Consensus       215 G~~~p~-GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~-----g~~~~ad~vv~~~~~  279 (487)
T COG1233         215 GVFYPR-GGMGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSD-----GENIEADAVVSNADP  279 (487)
T ss_pred             Ceeeee-CCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccc-----cceeccceeEecCch
Confidence            455654 5677899999999999999999999999999886 4556777664     457899999987653

>PRK05868 hypothetical protein; Validated

Probab=98.85  E-value=2.8e-08  Score=101.71  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ++.+.|.+ +...|++++++++|++++.++  +.+.|++++     +.+++||.||.|+|..+.
T Consensus       106 ~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~d-----g~~~~adlvIgADG~~S~  161 (372)
T PRK05868        106 DLVELLYG-ATQPSVEYLFDDSISTLQDDG--DSVRVTFER-----AAAREFDLVIGADGLHSN  161 (372)
T ss_pred             HHHHHHHH-hccCCcEEEeCCEEEEEEecC--CeEEEEECC-----CCeEEeCEEEECCCCCch
Confidence            44454443 335689999999999998654  667788776     668999999999997763

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.84  E-value=5.3e-08  Score=100.33  Aligned_cols=60  Identities=12%  Similarity=0.117  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe-ecccCceEEEEcCeEEEccCCCh
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE-KRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~-~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..+...|.+.+.+.|+.++++++++.+...+ +....|++. +   +...+++||.||.|+|..+
T Consensus       103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~-~~~~~V~~~~~---g~~~~i~adlvIGADG~~S  163 (390)
T TIGR02360       103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLA-GDRPYVTFERD---GERHRLDCDFIAGCDGFHG  163 (390)
T ss_pred             HHHHHHHHHHHHhcCCeEEEeeeeEEEEecC-CCccEEEEEEC---CeEEEEEeCEEEECCCCch
Confidence            4566778888888899999999988876533 244556654 3   1124799999999999876

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.83  E-value=2.1e-08  Score=105.91  Aligned_cols=49  Identities=35%  Similarity=0.507  Sum_probs=41.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCC---------CCCCceEEecCCceeeccCCCcchh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKG---------KPLSKVKISGGGRCNVTNGHCADKM  109 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~---------~~g~k~~~sG~g~~n~~~~~~~~~~  109 (481)
                      .+|||+||||||+|..||+.+++  . |.+|+|||++         .+        ||.|  .|..|.+++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~~~~~~~~~~~~--------GGtC--ln~GCiPsK   60 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQTHHGPPHYAAL--------GGTC--VNVGCVPKK   60 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecccCccccccCCc--------cCee--cCcCCccHH
Confidence            46999999999999999999999  5 8999999973         33        4888  888887743

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.83  E-value=7.2e-08  Score=100.49  Aligned_cols=82  Identities=16%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      ++..+..+|...+.+.|+.|..++.|++|.... ++.+.|.|..      ..|++.+||.|+|-|.  ..+-+..|.++ 
T Consensus       185 DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~------G~iet~~~VNaaGvWA--r~Vg~m~gvkv-  254 (856)
T KOG2844|consen  185 DPAGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPH------GSIETECVVNAAGVWA--REVGAMAGVKV-  254 (856)
T ss_pred             CHHHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccC------cceecceEEechhHHH--HHhhhhcCCcc-
Confidence            567788999999999999999999999998765 5667898884      6799999999999876  34555566553 


Q ss_pred             cCCCceeEeeeC
Q 011610          240 DPVPSLFTFKIA  251 (481)
Q Consensus       240 ~~~p~l~~~~~~  251 (481)
                      |+.|....+...
T Consensus       255 PL~p~~H~YvvT  266 (856)
T KOG2844|consen  255 PLVPMHHAYVVT  266 (856)
T ss_pred             cceeeeeeEEEe
Confidence            666665555444

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.83  E-value=2.3e-08  Score=103.38  Aligned_cols=62  Identities=19%  Similarity=0.361  Sum_probs=46.9

Q ss_pred             ChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ....+.+.|.+.+.+ .+++++++++|+++..++  +.+.|++..  .+++..+.||.||.|+|..+
T Consensus       105 ~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~--~~~~~~~~adlvIgADG~~S  167 (400)
T PRK06475        105 HRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIR--TNSVETVSAAYLIACDGVWS  167 (400)
T ss_pred             CHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEe--CCCCcEEecCEEEECCCccH
Confidence            456788888888866 489999999999998764  556666532  11245799999999999875

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.82  E-value=1.8e-08  Score=109.77  Aligned_cols=177  Identities=18%  Similarity=0.211  Sum_probs=92.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchh
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRG  124 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~  124 (481)
                      .+.++||+||||||+||++|+.|++  . |.+|+|||+. ....      .|+....+.   ...++++.+.-... +.+
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar--~~Gi~v~IiE~~~~~~~------~grA~gl~p---rtleiL~~lGl~d~-l~~   96 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSA--FPDITTRIVERKPGRLE------LGQADGIAC---RTMEMFQAFGFAER-ILK   96 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhc--CCCCcEEEEEcCCCCCC------CCeeeEECh---HHHHHHHhccchHH-HHh
Confidence            3457899999999999999999998  4 8999999954 3221      111110110   11122222211000 000


Q ss_pred             hH-----HhcCChH-HHHHHHHhcCCcceeecCCeeeec-CCChHHHHHHHHHHHHhCC--CEEEcCceEEEEEecCC-C
Q 011610          125 SF-----FSLHGPM-DTMSWFSDHGVELKTEDDGRVFPV-SDSSSSVIDCLLTEAKHRG--VVLQTGKVVTTASSDNA-G  194 (481)
Q Consensus       125 ~~-----l~~~~~~-~~~~~~~~~Gi~~~~~~~g~~~p~-~~~a~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~-~  194 (481)
                      ..     +..+... +....+...+...........||. ......+.+.|.+.+.+.|  +++++++++++++.+++ +
T Consensus        97 ~g~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~  176 (634)
T PRK08294         97 EAYWINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGE  176 (634)
T ss_pred             hcccccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCC
Confidence            00     0000000 000000000000000000011221 1233456788888888776  47889999999987631 1


Q ss_pred             CeEEEEEeecc---cCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          195 RKFLLKVEKRT---MNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       195 ~~~~V~~~~~~---~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ..+.|++.+..   ++..++++||+||.|+|+.+   .+-+.+|+..
T Consensus       177 ~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S---~VR~~lgi~~  220 (634)
T PRK08294        177 YPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS---RVRKAIGREL  220 (634)
T ss_pred             CCEEEEEEECCCCCCCceEEEEeCEEEECCCCch---HHHHhcCCCc
Confidence            34666665311   12236899999999999875   4555667654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.82  E-value=3e-08  Score=104.37  Aligned_cols=138  Identities=24%  Similarity=0.338  Sum_probs=78.0

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHG  131 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  131 (481)
                      +|+||||||+|++||..|++  .|.+|+|+|++..|        |.|  .|..|.+++.+..           .. ..  
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~~G--------G~c--~n~gciPsk~l~~-----------~a-~~--   55 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEADLG--------GTC--LNEGCMPTKSLLE-----------SA-EV--   55 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCccc--------ccC--CCCccccchHHHH-----------HH-HH--
Confidence            89999999999999999999  79999999988765        778  6777766332221           10 00  


Q ss_pred             hHHHHHHHHhcCCcceeecCCeeeec-CCChHH----HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          132 PMDTMSWFSDHGVELKTEDDGRVFPV-SDSSSS----VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       132 ~~~~~~~~~~~Gi~~~~~~~g~~~p~-~~~a~~----~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                       .+..+.....|+....+....-+.. ......    +.+.....+++.+++++.+. +..+  +  .+.+.|..++   
T Consensus        56 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~--~~~v~v~~~~---  126 (458)
T PRK06912         56 -HDKVKKANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE--T--DHRVRVEYGD---  126 (458)
T ss_pred             -HHHHHHHHhcCccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc--c--CCEEEEeeCC---
Confidence             0111222334543221100000000 000011    11223344556788887653 3222  2  2455565432   


Q ss_pred             CceEEEEcCeEEEccCCCh
Q 011610          207 NLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g  225 (481)
                       +..++++|+||+|||+.+
T Consensus       127 -~~~~~~~d~lviATGs~p  144 (458)
T PRK06912        127 -KEEVVDAEQFIIAAGSEP  144 (458)
T ss_pred             -CcEEEECCEEEEeCCCCC
Confidence             124799999999999865

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.82  E-value=2.1e-06  Score=90.68  Aligned_cols=61  Identities=16%  Similarity=0.090  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CC---eEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GR---KFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      ..+.+.+.+.+++.|++|+++++|++|+.++. ++   .+.|++.+  .+++..+.||+||+|+..+
T Consensus       219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~--g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK--PEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec--CCcceEEECCEEEECCChH
Confidence            33556688888899999999999999987530 11   23444542  1112568999999999864

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.81  E-value=1.2e-07  Score=100.69  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ++.+.+.+.+++.||+++.++.+.++...+  +...+.+.+     +.++.+|.||+|+|..+.
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~-----g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSD-----GTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECC-----CCEEEcCEEEEeeCCCCC
Confidence            445667788888999999999999998654  445566554     457899999999997654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.79  E-value=3.4e-08  Score=104.15  Aligned_cols=46  Identities=35%  Similarity=0.453  Sum_probs=39.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD  107 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~  107 (481)
                      +|||+||||||+|++||+.|++  .|.+|+|+|++.+|        |.|  .|..+.+
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~~~G--------G~c--~~~gciP   49 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKKYWG--------GVC--LNVGCIP   49 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC--------Cce--ecCCccc
Confidence            5899999999999999999999  79999999987766        777  5555544

>TIGR02730 carot_isom carotene isomerase

Probab=98.79  E-value=1.4e-07  Score=100.37  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ....+.++|.+.++++|++|+++++|.+|..++ +..++|++.+     +.++.||.||+|+|.+.
T Consensus       227 G~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~-----g~~~~ad~vV~a~~~~~  286 (493)
T TIGR02730       227 GVGQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLAD-----GEKIYAKRIVSNATRWD  286 (493)
T ss_pred             hHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCC-----CCEEEcCEEEECCChHH
Confidence            446788999999999999999999999998775 5667888875     66899999999998654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK07233 hypothetical protein; Provisional

Probab=98.79  E-value=1.9e-07  Score=97.20  Aligned_cols=58  Identities=19%  Similarity=0.149  Sum_probs=46.2

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      +....+.+.|.+.+++.|++|+++++|++|+.++  +.+.+...+     +..+.||+||+|+..
T Consensus       195 gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~~-----~~~~~ad~vI~a~p~  252 (434)
T PRK07233        195 GGFATLIDALAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEVD-----GEEEDFDAVISTAPP  252 (434)
T ss_pred             CCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEeC-----CceEECCEEEECCCH
Confidence            4466788999999999999999999999998765  444433333     467999999999974

>PRK14727 putative mercuric reductase; Provisional

Probab=98.77  E-value=4.5e-08  Score=103.56  Aligned_cols=47  Identities=30%  Similarity=0.416  Sum_probs=39.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCAD  107 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~  107 (481)
                      ..+||+|||+|++|+.+|+.|++  .|.+|+|+|++ .+|        |.|  .|..|.+
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~G--------G~c--~n~GciP   62 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIG--------GCC--VNVGCVP   62 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcce--------eEe--ccccccc
Confidence            56999999999999999999999  78999999976 666        667  5666655

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.76  E-value=1.4e-07  Score=99.63  Aligned_cols=65  Identities=22%  Similarity=0.331  Sum_probs=45.7

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC--C-eEEEEEeecccCc-eEEEEcCeEEEccCC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG--R-KFLLKVEKRTMNL-VECIEADYLLIASGS  223 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--~-~~~V~~~~~~~~~-~~~i~ad~VIlAtG~  223 (481)
                      ++...++.-|.+.++++||+|+++++|++|..+.++  + ..+|.+.....+. -....+|.||+|+|+
T Consensus       223 nqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs  291 (576)
T PRK13977        223 NQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGS  291 (576)
T ss_pred             CchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCc
Confidence            355788899999999999999999999999875212  2 2355554201111 124567999999996

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.76  E-value=1e-07  Score=97.66  Aligned_cols=136  Identities=21%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ||+|||||+||+++|++|++..+|.+|+|||+. ..+.      ...+  +......          ....+-....+.+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~------~~~~--tW~~~~~----------~~~~~~~~v~~~w   62 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPW------PNDR--TWCFWEK----------DLGPLDSLVSHRW   62 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccc------cCCc--ccccccc----------cccchHHHHheec
Confidence            899999999999999999332389999999954 4321      0111  1100000          0000100000111


Q ss_pred             ChHHHHHHHHhcCCcceeecC-----CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610          131 GPMDTMSWFSDHGVELKTEDD-----GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT  205 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~-----g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~  205 (481)
                      .           +..+.....     .+.| ...+...+.+.+.+.+. .+..++.+++|.+|+..+  ..+.|++++  
T Consensus        63 ~-----------~~~v~~~~~~~~~~~~~Y-~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~~v~~~~--  125 (374)
T PF05834_consen   63 S-----------GWRVYFPDGSRILIDYPY-CMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETG--DGVLVVLAD--  125 (374)
T ss_pred             C-----------ceEEEeCCCceEEcccce-EEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecC--ceEEEEECC--
Confidence            1           111111110     1122 12467788888998888 445677889999998775  556677776  


Q ss_pred             cCceEEEEcCeEEEccCCCh
Q 011610          206 MNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       206 ~~~~~~i~ad~VIlAtG~~g  225 (481)
                         +.+++|+.||.|+|..+
T Consensus       126 ---g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen  126 ---GRTIRARVVVDARGPSS  142 (374)
T ss_pred             ---CCEEEeeEEEECCCccc
Confidence               67999999999999543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.75  E-value=6.1e-08  Score=101.18  Aligned_cols=134  Identities=15%  Similarity=0.214  Sum_probs=79.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchh
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRG  124 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~  124 (481)
                      ..+.+||+|||||++|+++|++|.+  .|.. ++|+||+ ++|        |.++...-..         ...+.+..  
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~G--------g~W~~~ry~~---------l~~~~p~~--   63 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVG--------GTWRYNRYPG---------LRLDSPKW--   63 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcC--------CcchhccCCc---------eEECCchh--
Confidence            3467899999999999999999999  6777 9999966 666        3332211100         00000000  


Q ss_pred             hHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCCCCeEEEEEe
Q 011610          125 SFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                        +..|.           +.++.   ....||   ....+.+.+...+++.+.  +|.+++.|..+..++++..|.|+++
T Consensus        64 --~~~~~-----------~~p~~---~~~~~~---~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~  124 (443)
T COG2072          64 --LLGFP-----------FLPFR---WDEAFA---PFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTS  124 (443)
T ss_pred             --eeccC-----------CCccC---CcccCC---CcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEc
Confidence              00110           00010   112222   112256666777776664  4666777777766653468999988


Q ss_pred             ecccCceEEEEcCeEEEccCC
Q 011610          203 KRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      +.   ...++.||.||+|||.
T Consensus       125 ~~---~~~~~~a~~vV~ATG~  142 (443)
T COG2072         125 DG---GTGELTADFVVVATGH  142 (443)
T ss_pred             CC---CeeeEecCEEEEeecC
Confidence            51   1112779999999995

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.75  E-value=5.4e-08  Score=102.50  Aligned_cols=37  Identities=35%  Similarity=0.415  Sum_probs=33.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      .+|||+|||||++|++||..|++  .|.+|+|||++..|
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~G   38 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAK--LGKKVALIEKGPLG   38 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCccc
Confidence            35999999999999999999999  79999999996665

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.74  E-value=3.4e-07  Score=88.60  Aligned_cols=185  Identities=18%  Similarity=0.218  Sum_probs=96.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhcc--CCCCcEEEEeCCCCC--CceEEecCCcee-eccCCCcchhHHhhccCCCChhch
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTV--APKLNVVIIEKGKPL--SKVKISGGGRCN-VTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~--~~g~~V~llE~~~~g--~k~~~sG~g~~n-~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      .++||+|||||-+|.+.|++|+++  ..|++|+|+|++..-  .+..++-||-|. ++-.+..+..-|...|..+..+..
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl  164 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHL  164 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhh
Confidence            578999999999999999999873  247999999987443  233344455553 332222221111111111100000


Q ss_pred             hh-----HHhcCC--------hHH-------HHHHHHhcCCccee---ecCCeeeecC-----------------CChHH
Q 011610          124 GS-----FFSLHG--------PMD-------TMSWFSDHGVELKT---EDDGRVFPVS-----------------DSSSS  163 (481)
Q Consensus       124 ~~-----~l~~~~--------~~~-------~~~~~~~~Gi~~~~---~~~g~~~p~~-----------------~~a~~  163 (481)
                      ..     .--.|.        .++       ..+...+.|.....   +.-..-||+-                 .+...
T Consensus       165 ~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~  244 (509)
T KOG2853|consen  165 GILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWA  244 (509)
T ss_pred             ccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHH
Confidence            00     000000        011       11112223322110   0001223321                 24567


Q ss_pred             HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec----------------ccCceEEEEcCeEEEccCCChhH
Q 011610          164 VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR----------------TMNLVECIEADYLLIASGSSQQG  227 (481)
Q Consensus       164 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~----------------~~~~~~~i~ad~VIlAtG~~g~g  227 (481)
                      ++..+.+.+..+|+.+..+ +|++++.+. ...+.+.+++.                .+.-.+.+.++.+|+|.|+|.  
T Consensus       245 LLs~~rrk~~~lGv~f~~G-eV~~Fef~s-qr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s--  320 (509)
T KOG2853|consen  245 LLSGIRRKAITLGVQFVKG-EVVGFEFES-QRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWS--  320 (509)
T ss_pred             HHHHHHHHhhhhcceEecc-eEEEEEEec-ccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccH--
Confidence            8889999999999998654 777776542 11111111110                011235789999999999987  


Q ss_pred             HHHHHHcCCC
Q 011610          228 HRLAAQLGHS  237 (481)
Q Consensus       228 ~~la~~~G~~  237 (481)
                      -++|+-+|+-
T Consensus       321 ~QvArlAgIG  330 (509)
T KOG2853|consen  321 GQVARLAGIG  330 (509)
T ss_pred             HHHHHHhccC
Confidence            4678777765

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.71  E-value=6.1e-08  Score=100.65  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ...++.+.|.+.+.  .+.++++++|++++.++  +.+.|.+.+     +.++.+|.||.|+|.++.
T Consensus       103 ~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       103 HRADFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQVLFTD-----GTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CHHHHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEEEEEcC-----CCEEEeeEEEECCCccHH
Confidence            34567777776653  35688999999998765  567887775     568999999999998763

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.67  E-value=2.6e-08  Score=104.38  Aligned_cols=59  Identities=25%  Similarity=0.378  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCe-EEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK-FLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~-~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +...+.+.|.+.+.+.||+++.++ |+++..++ ++. ..|++.+     +.+++||.||-|||..+
T Consensus       152 DR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~-----g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  152 DRAKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDD-----GRTIEADFFIDASGRRS  211 (454)
T ss_dssp             EHHHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETT-----SEEEEESEEEE-SGGG-
T ss_pred             eHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECC-----CCEEEEeEEEECCCccc
Confidence            577888999999999999999884 88887765 343 4677766     78899999999999543

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.1e-08  Score=97.09  Aligned_cols=57  Identities=12%  Similarity=0.186  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ..+..+|.+..++..|.++.-.+.+++++.+. ++-+.|++++     +-.+.++.||++||+
T Consensus       266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n-----GavLkaktvIlstGA  323 (520)
T COG3634         266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN-----GAVLKARTVILATGA  323 (520)
T ss_pred             hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC-----CceeccceEEEecCc
Confidence            45667777777888888888888888876321 3457888887     789999999999996

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.67  E-value=1e-07  Score=89.78  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=78.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||+|++|++||+.|++  .|.+|+|+||+ .+|        ||.-........ .++-.+|........      
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvG--------GRlAtRRl~~g~-~DhGAqYfk~~~~~F------   64 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVG--------GRLATRRLDGGR-FDHGAQYFKPRDELF------   64 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcc--------cchheeccCCcc-ccccceeecCCchHH------
Confidence            479999999999999999999  89999999976 344        332111111000 011112222111111      


Q ss_pred             CChHHHHHHHHhcCCc-ce-----eecCCeeeecCCCh----HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEE
Q 011610          130 HGPMDTMSWFSDHGVE-LK-----TEDDGRVFPVSDSS----SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLL  199 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~-~~-----~~~~g~~~p~~~~a----~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V  199 (481)
                         .+..+.+.+.|+. ..     ...++..-|..++.    ..=+.+|.+.+ ....+|.++++|+++...+  +.|++
T Consensus        65 ---~~~Ve~~~~~glV~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~--~~W~l  138 (331)
T COG3380          65 ---LRAVEALRDDGLVDVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTD--NDWTL  138 (331)
T ss_pred             ---HHHHHHHHhCCceeeccccccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecC--CeeEE
Confidence               1222223333321 11     01111111111111    11123333322 2467889999999998875  78999


Q ss_pred             EEeecccCceEEEEcCeEEEccC
Q 011610          200 KVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       200 ~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      ++++    +.+...+|.||+|.=
T Consensus       139 ~~~~----g~~~~~~d~vvla~P  157 (331)
T COG3380         139 HTDD----GTRHTQFDDVVLAIP  157 (331)
T ss_pred             EecC----CCcccccceEEEecC
Confidence            9864    246788999999864

>PRK07846 mycothione reductase; Reviewed

Probab=98.66  E-value=9.2e-08  Score=100.39  Aligned_cols=46  Identities=26%  Similarity=0.388  Sum_probs=38.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKM  109 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~  109 (481)
                      +|||+||||||+|..||..+    .|.+|+|+|++.+|        |.|  .|..|.+++
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~----~G~~V~lie~~~~G--------GtC--~n~GCiPsK   46 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF----ADKRIAIVEKGTFG--------GTC--LNVGCIPTK   46 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH----CCCeEEEEeCCCCC--------Ccc--cCcCcchhH
Confidence            38999999999999988653    48999999988776        788  787787743

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.65  E-value=1.2e-07  Score=100.27  Aligned_cols=55  Identities=29%  Similarity=0.471  Sum_probs=41.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCce-EEecCCceeeccCCCcch
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKV-KISGGGRCNVTNGHCADK  108 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~-~~sG~g~~n~~~~~~~~~  108 (481)
                      .|||+|||+|++|+.||+.+++  .|.+|+|+|+..+..+- ...-||.|  .|..|.++
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~~~~~~~~~~~GGtc--~n~GCiPs   57 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVTPTPLGTRWGIGGTC--VNVGCIPK   57 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCcceeccccc--cccCcCch
Confidence            5899999999999999999999  79999999964321100 00125778  77777764

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03452 mycothione_red mycothione reductase

Probab=98.64  E-value=8.7e-08  Score=100.63  Aligned_cols=46  Identities=26%  Similarity=0.410  Sum_probs=38.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKM  109 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~  109 (481)
                      +|||+|||+|++|..||..  .  .|.+|+|+|++.+|        |.|  .|..|.+++
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~--~g~~V~lie~~~~G--------GtC--~n~GCiPsK   47 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--F--ADKRIAIVEKGTFG--------GTC--LNVGCIPTK   47 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--H--CCCeEEEEeCCCCC--------Cee--eccCccchH
Confidence            5899999999999988644  3  48999999988776        788  788887743

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.63  E-value=1e-07  Score=103.52  Aligned_cols=48  Identities=29%  Similarity=0.389  Sum_probs=41.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC--CCCCceEEecCCceeeccCCCcchh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKM  109 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~~~~~~~~~~  109 (481)
                      +|||+|||+|++|..||+.+++  .|++|+|||++  .+|        |.|  .|..|.+++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~~~~lG--------GtC--vn~GCiPsK  165 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGDDDSIG--------GTC--VNVGCIPSK  165 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCccc--------cce--eEeCCcchH
Confidence            6899999999999999999999  79999999964  555        788  777777743

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.63  E-value=2.9e-07  Score=98.14  Aligned_cols=58  Identities=16%  Similarity=0.236  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ....+.++|.+.+++.|++|+++++|.+|..++ ++.+.|++.+     ++++.||.||+|++.
T Consensus       217 G~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~-----g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       217 GTGALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLAD-----GERLDADAVVSNADL  274 (502)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECC-----CCEEECCEEEECCcH
Confidence            456788999999999999999999999998765 4456788775     568999999998874

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.63  E-value=6.7e-08  Score=107.69  Aligned_cols=142  Identities=19%  Similarity=0.298  Sum_probs=79.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ++|+||||||+|+++|+.|++.++|++|+|+|++...+.   .| ..+.++...       ...+......+.......+
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~---~G-~Gi~ls~~~-------l~~L~~~~~~~~~~~~~~~   69 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDT---FG-WGVVFSDAT-------LGNLRAADPVSAAAIGDAF   69 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcc---cC-cceEccHHH-------HHHHHhcCHHHHHHHHHhc
Confidence            489999999999999999999434899999996643210   11 112222110       0111101111111111111


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                      ...+...++ ..|..  ....+..|. .....++.+.|.+++.+.||+++++++|.++..                   .
T Consensus        70 ~~~~~~~~~-~~g~~--~~~~g~~~~-~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------------~  126 (765)
T PRK08255         70 NHWDDIDVH-FKGRR--IRSGGHGFA-GIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------------L  126 (765)
T ss_pred             ccCCceEEE-ECCEE--EEECCeeEe-cCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------------h
Confidence            100000010 01111  112344442 356788999999999999999999998765421                   1


Q ss_pred             EEEcCeEEEccCCChh
Q 011610          211 CIEADYLLIASGSSQQ  226 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~  226 (481)
                      ...+|.||.|+|..+.
T Consensus       127 ~~~~D~VVgADG~~S~  142 (765)
T PRK08255        127 AADADLVIASDGLNSR  142 (765)
T ss_pred             hcCCCEEEEcCCCCHH
Confidence            2468999999997654

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.61  E-value=9.6e-07  Score=90.40  Aligned_cols=69  Identities=22%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC-hhHHHHHHHcC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS-QQGHRLAAQLG  235 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~-g~g~~la~~~G  235 (481)
                      ...+.++|.+.+++.|++++.+++|.++..++ ++...|.+++   ++...++||.||+|+|++ +.  .++++++
T Consensus       262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~--gL~a~l~  331 (419)
T TIGR03378       262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRN---HRDIPLRADHFVLASGSFFSN--GLVAEFD  331 (419)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecC---CccceEECCEEEEccCCCcCH--HHHhhcC
Confidence            44667778899999999999999999998775 3334455553   112479999999999998 63  3455544

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07208 hypothetical protein; Provisional

Probab=98.61  E-value=1.4e-06  Score=92.20  Aligned_cols=63  Identities=13%  Similarity=0.080  Sum_probs=44.1

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ....+.+.|.+.+++.|++|+++++|++|..++ ++...+.+.+..++....+.||.||.|+-.
T Consensus       216 G~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~  278 (479)
T PRK07208        216 GPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTADQVISSMPL  278 (479)
T ss_pred             CcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence            345678889999999999999999999999875 333322222101122246899999998764

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.61  E-value=8.9e-07  Score=87.54  Aligned_cols=73  Identities=22%  Similarity=0.206  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEEEeecccC-ceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLKVEKRTMN-LVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~~~~~~~~-~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      ......|.....+.+++|++++.|++|..++ ++....|++.+.... ....+.++.||+|.|+-.+ .+++..-|
T Consensus       193 s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T-p~LLl~SG  267 (296)
T PF00732_consen  193 SAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT-PRLLLRSG  267 (296)
T ss_dssp             HHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH-HHHHHHTT
T ss_pred             ehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC-hhhhcccc
Confidence            3334445444444499999999999996642 134567777652222 1357889999999996433 23443333

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02268 probable polyamine oxidase

Probab=98.61  E-value=1.5e-06  Score=90.90  Aligned_cols=39  Identities=26%  Similarity=0.500  Sum_probs=34.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceE
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK   91 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~   91 (481)
                      .+|+|||||.|||+||+.|.+  .|++|+||| ++++|+++.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GGri~   40 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGGRVH   40 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCceee
Confidence            379999999999999999998  789999999 678886554

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.61  E-value=1.1e-07  Score=102.79  Aligned_cols=35  Identities=31%  Similarity=0.545  Sum_probs=32.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+..+|+|||||++|+++|+.|++  .|++|+|+|+.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~  113 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKD  113 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecc
Confidence            456899999999999999999999  79999999975

>PLN02576 protoporphyrinogen oxidase

Probab=98.55  E-value=1.2e-06  Score=93.08  Aligned_cols=43  Identities=23%  Similarity=0.400  Sum_probs=36.2

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCC-CCcEEEEe-CCCCCCceE
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIE-KGKPLSKVK   91 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE-~~~~g~k~~   91 (481)
                      ++.++||+|||||++||+||+.|++  . |.+|+|+| ++.+|+.+.
T Consensus         9 ~~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~rvGGr~~   53 (496)
T PLN02576          9 AASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARDRVGGNIT   53 (496)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCCCCCCcee
Confidence            3456799999999999999999999  6 89999999 557885443

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.55  E-value=9.3e-07  Score=87.02  Aligned_cols=149  Identities=17%  Similarity=0.157  Sum_probs=84.4

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC--CCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK--PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~--~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      ..+..+||||||||.+|.+.|+.|++  .|.+|.||||+-  +-|                      +...+......  
T Consensus        41 ~~~~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERDl~EPdR----------------------ivGEllQPGG~--   94 (509)
T KOG1298|consen   41 RNDGAADVIIVGAGVAGSALAYALAK--DGRRVHVIERDLSEPDR----------------------IVGELLQPGGY--   94 (509)
T ss_pred             ccCCcccEEEECCcchHHHHHHHHhh--CCcEEEEEecccccchH----------------------HHHHhcCcchh--
Confidence            34467899999999999999999999  799999999862  211                      11111111110  


Q ss_pred             hhHHhcCChHHHHHHHHh---cCCccee--ecCCeeeecC----------CChHHHHHHHHHHHH-hCCCEEEcCceEEE
Q 011610          124 GSFFSLHGPMDTMSWFSD---HGVELKT--EDDGRVFPVS----------DSSSSVIDCLLTEAK-HRGVVLQTGKVVTT  187 (481)
Q Consensus       124 ~~~l~~~~~~~~~~~~~~---~Gi~~~~--~~~g~~~p~~----------~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~  187 (481)
                       ..+...+.+|..+-.+.   .|.....  ++....||..          .....++..|++.+. ..+|++..+ +|.+
T Consensus        95 -~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~s  172 (509)
T KOG1298|consen   95 -LALSKLGLEDCVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKS  172 (509)
T ss_pred             -HHHHHhCHHHHhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHH
Confidence             01222233333222211   1111111  0011223321          123456667776654 457877544 6888


Q ss_pred             EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      +..++ +-..+|+.++ +.++..+..|...|+|+|.-
T Consensus       173 Llee~-gvvkGV~yk~-k~gee~~~~ApLTvVCDGcf  207 (509)
T KOG1298|consen  173 LLEEE-GVVKGVTYKN-KEGEEVEAFAPLTVVCDGCF  207 (509)
T ss_pred             HHhcc-CeEEeEEEec-CCCceEEEecceEEEecchh
Confidence            87665 3334677765 44445678899999999964

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.54  E-value=7.5e-07  Score=93.36  Aligned_cols=56  Identities=20%  Similarity=0.250  Sum_probs=41.0

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      .....+.+.|.+.+...  +|+++++|++|+.++  +.+.|.+.+     ++++.||.||+|+-.
T Consensus       218 ~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~--~~~~v~~~~-----g~~~~~d~vI~a~p~  273 (451)
T PRK11883        218 GGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSG--DGYEIVLSN-----GGEIEADAVIVAVPH  273 (451)
T ss_pred             cHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcC--CeEEEEECC-----CCEEEcCEEEECCCH
Confidence            33455666666555432  899999999998875  567777665     567999999999863

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.53  E-value=5.7e-07  Score=91.92  Aligned_cols=64  Identities=14%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      .+.-.+.-.+.++|+.+....+|.++.+++++...++++.+..++...+|+|+.||.|||--.+
T Consensus       225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD  288 (680)
T KOG0042|consen  225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSD  288 (680)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence            3344455566788999999999999998762334477776655666789999999999996544

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.52  E-value=8e-07  Score=93.60  Aligned_cols=41  Identities=22%  Similarity=0.506  Sum_probs=34.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCC--CCcEEEEe-CCCCCCce
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAP--KLNVVIIE-KGKPLSKV   90 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~--g~~V~llE-~~~~g~k~   90 (481)
                      +.||+|||||++||+||+.|++.++  |.+|+|+| ++.+|+.+
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~   45 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI   45 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence            4699999999999999999999322  89999999 56787543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.51  E-value=3.4e-06  Score=87.21  Aligned_cols=58  Identities=19%  Similarity=0.140  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      .+.+.|.+.+++.|++++.+++|.+++.++ ++...+.+.   +++...+.||.||+|+|+.
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~---~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTR---NHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEee---CCceEEEECCEEEEeCCCc
Confidence            455678888889999999999999998765 332233332   2223579999999999963

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.51  E-value=6.4e-06  Score=84.47  Aligned_cols=69  Identities=19%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ..+...+.+.+++.|++++++++|.++..++  +.+.|.+.+     +.++.+|.||+|+|..+. ..+++..|+..
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-----g~~i~~D~vI~a~G~~p~-~~l~~~~gl~~  251 (377)
T PRK04965        183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDS-----GRSIEVDAVIAAAGLRPN-TALARRAGLAV  251 (377)
T ss_pred             HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcC-----CcEEECCEEEECcCCCcc-hHHHHHCCCCc
Confidence            4556677888889999999999999998654  556677665     678999999999998764 34667777664

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.50  E-value=3.7e-06  Score=89.39  Aligned_cols=64  Identities=23%  Similarity=0.193  Sum_probs=47.8

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      +....+.++|.+.++++|++|+++++|++|..++ +....|.+.+...++++++.||.||.++..
T Consensus       229 GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       229 GSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPP  292 (492)
T ss_pred             CcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence            4567789999999999999999999999999875 333455554311111257999999998864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.47  E-value=2.2e-06  Score=90.42  Aligned_cols=55  Identities=27%  Similarity=0.440  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      .....+.+.|.+.+.+  ++|+++++|++|+.++  +.+.|++.+     +..+.||.||+|+-
T Consensus       223 gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~~v~~~~-----g~~~~ad~VI~a~p  277 (463)
T PRK12416        223 GGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQG--DRYEISFAN-----HESIQADYVVLAAP  277 (463)
T ss_pred             CCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcC--CEEEEEECC-----CCEEEeCEEEECCC
Confidence            3445677777776644  6899999999999875  567787765     56789999999884

>PTZ00367 squalene epoxidase; Provisional

Probab=98.47  E-value=7.7e-07  Score=95.45  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ..+||+|||||++|+++|+.|++  .|.+|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence            46999999999999999999999  799999999754

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.46  E-value=2.5e-06  Score=88.83  Aligned_cols=64  Identities=13%  Similarity=0.125  Sum_probs=50.1

Q ss_pred             eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          153 RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       153 ~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      ..||. .....+.++|.+.+...|.+++++++|.+|..++++..++|++.+     ++++.|+.||....
T Consensus       224 ~~yp~-gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~-----Ge~i~a~~VV~~~s  287 (443)
T PTZ00363        224 FIYPL-YGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG-----GEVAKCKLVICDPS  287 (443)
T ss_pred             ceeeC-CCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC-----CcEEECCEEEECcc
Confidence            35663 346678899999999999999999999999876412446788765     67899999997544

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.45  E-value=7e-06  Score=86.32  Aligned_cols=61  Identities=8%  Similarity=-0.034  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ..+.+.|.+.+++.|++|+++++|++|..++ ++ ..+|++.+...++..++.||.||+|+..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            4567888888888999999999999998654 34 4467665310000117899999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.45  E-value=1e-05  Score=83.63  Aligned_cols=67  Identities=21%  Similarity=0.295  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ..+.+.+.+.+++.||+++++++|+++.. +  +.+.+.+.+     +.++.+|.||+|+|..+.. .+++..|+.
T Consensus       186 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~-----g~~i~aD~Vv~a~G~~pn~-~l~~~~gl~  252 (396)
T PRK09754        186 PPVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQS-----GETLQADVVIYGIGISAND-QLAREANLD  252 (396)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECC-----CCEEECCEEEECCCCChhh-HHHHhcCCC
Confidence            44556778888899999999999999975 3  445666665     5689999999999988763 466666654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.43  E-value=3.1e-07  Score=92.62  Aligned_cols=154  Identities=19%  Similarity=0.225  Sum_probs=81.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC--ceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS--KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~--k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      .+|+|+||.||++|+.|+.|.+. ...+++.||+ +....  ..+.. +.+.....         ..       +++. .
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~-~~~~q~~f---------l~-------Dlvt-~   62 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLP-GARMQVSF---------LK-------DLVT-L   62 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--S-S-B-SS-T---------TS-------SSST-T
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCC-CCcccccc---------cc-------ccCc-C
Confidence            58999999999999999999985 3689999995 34321  11111 11111111         00       0100 0


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC--CeEEEEEeec
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG--RKFLLKVEKR  204 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--~~~~V~~~~~  204 (481)
                      -...++..+++++.+.|-....-..+..+|   ....+.+++.-.+++..-.++++++|++|...+++  ..|.|++.+ 
T Consensus        63 ~~P~s~~sflnYL~~~~rl~~f~~~~~~~p---~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-  138 (341)
T PF13434_consen   63 RDPTSPFSFLNYLHEHGRLYEFYNRGYFFP---SRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-  138 (341)
T ss_dssp             T-TTSTTSHHHHHHHTT-HHHHHHH--SS----BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-
T ss_pred             cCCCCcccHHHHHHHcCChhhhhhcCCCCC---CHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-
Confidence            011122345556666553222111123333   34556677776677777669999999999976511  258888854 


Q ss_pred             ccCceEEEEcCeEEEccCCChh
Q 011610          205 TMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+..+.|+.||+|+|..+.
T Consensus       139 ~~g~~~~~~ar~vVla~G~~P~  160 (341)
T PF13434_consen  139 SDGDGETYRARNVVLATGGQPR  160 (341)
T ss_dssp             TTS-EEEEEESEEEE----EE-
T ss_pred             cCCCeeEEEeCeEEECcCCCCC
Confidence            3444789999999999997654

>PLN02785 Protein HOTHEAD

Probab=98.43  E-value=9.8e-06  Score=87.51  Aligned_cols=36  Identities=33%  Similarity=0.492  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .....||+||||||.+|+.+|..|++   +.+|+|||++
T Consensus        51 ~~~~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G   86 (587)
T PLN02785         51 GGDSAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERG   86 (587)
T ss_pred             cccccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecC
Confidence            34457999999999999999999998   4799999965

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.42  E-value=1.4e-06  Score=87.11  Aligned_cols=34  Identities=32%  Similarity=0.595  Sum_probs=31.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +.+|+|||||++|+++|..|.+  .|++|+|+|+.+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecc
Confidence            4689999999999999999999  899999999643

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.40  E-value=5.9e-06  Score=85.32  Aligned_cols=41  Identities=24%  Similarity=0.500  Sum_probs=35.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceE
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVK   91 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~   91 (481)
                      +.|+|||||++||+||++|++.++..+|+|+|++ +.|+.+.
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~   42 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR   42 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence            3689999999999999999996555999999964 8887554

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.39  E-value=9.8e-07  Score=81.72  Aligned_cols=31  Identities=42%  Similarity=0.723  Sum_probs=29.0

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ||+|||||++|++||..|++  .+.+|+|+|+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~   31 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKS   31 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEESSS
T ss_pred             CEEEEecHHHHHHHHHHHhc--CCCeEEEEecc
Confidence            79999999999999999998  89999999854

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02529 lysine-specific histone demethylase 1

Probab=98.39  E-value=2e-05  Score=86.58  Aligned_cols=41  Identities=29%  Similarity=0.529  Sum_probs=35.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCce
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV   90 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~   90 (481)
                      ....||+|||||++|++||..|++  .|++|+|+| ++.+|+.+
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~  199 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRPGGRV  199 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccCcCce
Confidence            356899999999999999999999  799999999 56777543

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.37  E-value=3.2e-06  Score=86.37  Aligned_cols=154  Identities=19%  Similarity=0.253  Sum_probs=81.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCC-CcEEEEe-CCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIE-KGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE-~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      +++|+|||+|++|++.|.+|.+..+. ..|.|+| +...|..+.-+-.-.++..|...            .  .+  ++.
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a------------~--~m--S~~   64 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPA------------A--RM--SAF   64 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhcccc------------c--cc--ccc
Confidence            47999999999999999999874322 2399999 56777322111111122222110            0  00  000


Q ss_pred             hcCChHHHHHHHHhcCCcce----eecCCeeeecCCChHHHHHHHHHHHHhCCC---EEEcCceEEEEEecCCCCeEEEE
Q 011610          128 SLHGPMDTMSWFSDHGVELK----TEDDGRVFPVSDSSSSVIDCLLTEAKHRGV---VLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~----~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv---~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                      ..-.+.++.+|+...+....    ...++..||...--..++......+.+.+-   -....++++++..++++..+.+.
T Consensus        65 ~pD~p~~F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~  144 (474)
T COG4529          65 APDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVT  144 (474)
T ss_pred             CCCCchHHHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEe
Confidence            01125677788877622222    123355665221112222221222222221   22345566777665313456666


Q ss_pred             EeecccCceEEEEcCeEEEccCCC
Q 011610          201 VEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       201 ~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      +.+     +....||.+|+|||..
T Consensus       145 ~~~-----g~~~~ad~~Vlatgh~  163 (474)
T COG4529         145 TAD-----GPSEIADIIVLATGHS  163 (474)
T ss_pred             cCC-----CCeeeeeEEEEeccCC
Confidence            666     7788999999999964

>PLN02676 polyamine oxidase

Probab=98.37  E-value=7.2e-06  Score=86.83  Aligned_cols=56  Identities=20%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHHhC------CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          160 SSSSVIDCLLTEAKHR------GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~------Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      ....+.+.|.+.+.+.      +.+|+++++|++|..++  +.+.|++.+     +.+++||+||+|..
T Consensus       222 G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~--~gV~V~~~~-----G~~~~a~~VIvtvP  283 (487)
T PLN02676        222 GYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK--NGVTVKTED-----GSVYRAKYVIVSVS  283 (487)
T ss_pred             CHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC--CcEEEEECC-----CCEEEeCEEEEccC
Confidence            4556677777655332      36799999999999875  567888876     66899999999986

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=98.37  E-value=4.3e-06  Score=88.93  Aligned_cols=230  Identities=19%  Similarity=0.237  Sum_probs=123.8

Q ss_pred             HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcccCCCc-----e
Q 011610          171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPS-----L  245 (481)
Q Consensus       171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~~~p~-----l  245 (481)
                      ..+++|++++.+.+|+.|..+.    -.|.+++     +..+..|.+|+||||.+.            +++-|.     .
T Consensus        68 wy~~~~i~L~~~~~v~~idr~~----k~V~t~~-----g~~~~YDkLilATGS~pf------------i~PiPG~~~~~v  126 (793)
T COG1251          68 WYEENGITLYTGEKVIQIDRAN----KVVTTDA-----GRTVSYDKLIIATGSYPF------------ILPIPGSDLPGV  126 (793)
T ss_pred             hHHHcCcEEEcCCeeEEeccCc----ceEEccC-----CcEeecceeEEecCcccc------------ccCCCCCCCCCe
Confidence            3467899999999999997653    3566666     789999999999998652            122222     2


Q ss_pred             eEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecC
Q 011610          246 FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFV  325 (481)
Q Consensus       246 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~  325 (481)
                      +.++.-+.....+...+-          .    +.-+...|+++       |     +-  ++..|.+.+..+.+ +.++
T Consensus       127 ~~~R~i~D~~am~~~ar~----------~----~~avVIGGGLL-------G-----lE--aA~~L~~~Gm~~~V-vh~~  177 (793)
T COG1251         127 FVYRTIDDVEAMLDCARN----------K----KKAVVIGGGLL-------G-----LE--AARGLKDLGMEVTV-VHIA  177 (793)
T ss_pred             eEEecHHHHHHHHHHHhc----------c----CCcEEEccchh-------h-----hH--HHHHHHhCCCceEE-Eeec
Confidence            222222111111100000          0    00112223333       2     21  24556666666666 7788


Q ss_pred             CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccC
Q 011610          326 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKG  405 (481)
Q Consensus       326 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~  405 (481)
                      |.+..+||+..-......    .+......  ++.++..+++..      +..+..+..++...|..   ++-+.-.|.+
T Consensus       178 ~~lMerQLD~~ag~lL~~----~le~~Gi~--~~l~~~t~ei~g------~~~~~~vr~~DG~~i~a---d~VV~a~GIr  242 (793)
T COG1251         178 PTLMERQLDRTAGRLLRR----KLEDLGIK--VLLEKNTEEIVG------EDKVEGVRFADGTEIPA---DLVVMAVGIR  242 (793)
T ss_pred             chHHHHhhhhHHHHHHHH----HHHhhcce--eecccchhhhhc------CcceeeEeecCCCcccc---eeEEEecccc
Confidence            988888886543222111    11111111  111222222221      12222222222222221   3444455666


Q ss_pred             CCceeEEecCCCCCCC-CCc-ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHh
Q 011610          406 QFKDEFVTAGGVPLSE-ISL-NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG  468 (481)
Q Consensus       406 ~~~~a~vt~GGv~~~e-i~~-~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa  468 (481)
                      |..+--+.+ |+.++. |-. +.| -+..|.+|++|||..+.|.+.| ...-+|-++.+++.++.
T Consensus       243 Pn~ela~~a-GlavnrGIvvnd~m-qTsdpdIYAvGEcae~~g~~yG-LVaP~yeq~~v~a~hl~  304 (793)
T COG1251         243 PNDELAKEA-GLAVNRGIVVNDYM-QTSDPDIYAVGECAEHRGKVYG-LVAPLYEQAKVLADHLC  304 (793)
T ss_pred             cccHhHHhc-CcCcCCCeeecccc-cccCCCeeehhhHHHhcCccce-ehhHHHHHHHHHHHHhc
Confidence            655544444 333333 111 344 5778999999999999999999 77888888888888874

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=8.8e-06  Score=78.93  Aligned_cols=151  Identities=18%  Similarity=0.246  Sum_probs=81.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe--CCCCC-CceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE--KGKPL-SKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE--~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      .+..||.+|||||.+||+||-+++.  -|.+|.++|  ++.+- .+.-+  ||.|  .|..+++.+           .+.
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGl--GGTC--vNVGCIPKK-----------LMH   78 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGL--GGTC--VNVGCIPKK-----------LMH   78 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCcccc--Ccee--eecccccHH-----------HHH
Confidence            3467999999999999999999999  799999999  66543 22211  5677  777776521           111


Q ss_pred             hhHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-C---CeEEE
Q 011610          124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-G---RKFLL  199 (481)
Q Consensus       124 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~---~~~~V  199 (481)
                      ++.+-    -+.+.-....|-....   +.+   ..+...+.+...+.....+--.+..-+=+.+...+. +   +...+
T Consensus        79 QAall----G~al~da~kyGW~~~e---~~i---khdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I  148 (503)
T KOG4716|consen   79 QAALL----GEALHDARKYGWNVDE---QKI---KHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKI  148 (503)
T ss_pred             HHHHH----HHHHHHHHhhCCCCcc---ccc---cccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceE
Confidence            11110    0111112233322221   111   134455666777766665432222211122221110 0   11233


Q ss_pred             EEeecccCceEEEEcCeEEEccCCCh
Q 011610          200 KVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       200 ~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .... +.+..+.++|+.+|+|||..+
T Consensus       149 ~at~-~~gk~~~~ta~~fvIatG~RP  173 (503)
T KOG4716|consen  149 KATN-KKGKERFLTAENFVIATGLRP  173 (503)
T ss_pred             EEec-CCCceEEeecceEEEEecCCC
Confidence            3332 233457899999999999754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.35  E-value=6.6e-06  Score=94.31  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=33.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ..+||+|||||||||+||+.|++  .|++|+|+|+. .+|
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~G  199 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAG  199 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCC
Confidence            46899999999999999999999  89999999965 444

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.33  E-value=4.2e-06  Score=87.76  Aligned_cols=34  Identities=32%  Similarity=0.609  Sum_probs=30.0

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +|+|||||++|+++|..|++.+++.+|+|||+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~   35 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD   35 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence            7999999999999999999855567999999754

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=1.6e-05  Score=77.02  Aligned_cols=67  Identities=27%  Similarity=0.406  Sum_probs=47.3

Q ss_pred             cCCCceeEEecCCCCCCC--CCc-----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          404 KGQFKDEFVTAGGVPLSE--ISL-----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       404 ~~~~~~a~vt~GGv~~~e--i~~-----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                      .-+.+.|++.+=||--..  ||.     .|++.|..|+|||||.+-.+.    ||--+.|  ||.+||.+||+.++.+.+
T Consensus       299 IPgLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~E----GYveSaA--~Gllag~naa~~~~g~~~  372 (439)
T COG1206         299 IPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVE----GYVESAA--SGLLAGINAARLALGEEP  372 (439)
T ss_pred             cCCcchhhhhhccceecccccCChhhhhHHhhcccCCCcEEeeeeecch----hhhHHhh--hhHHHhhHHHHHhcCCCC
Confidence            346677777766653322  332     678999999999999554433    4666666  999999999988766543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.30  E-value=9.4e-06  Score=84.98  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=31.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      .+|+|||||++|+.||..|++.+++.+|+|+|+..
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~   36 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR   36 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            58999999999999999998865688999999764

>PLN02568 polyamine oxidase

Probab=98.28  E-value=1.7e-05  Score=84.93  Aligned_cols=55  Identities=20%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      .....+++.|.+.+.  +..|+++++|+.|...+  +.+.|++.+     +.++.||+||+|+=
T Consensus       239 gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~V~~~d-----G~~~~aD~VIvTvP  293 (539)
T PLN02568        239 KGYLSVIEALASVLP--PGTIQLGRKVTRIEWQD--EPVKLHFAD-----GSTMTADHVIVTVS  293 (539)
T ss_pred             CcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEEEEEcC-----CCEEEcCEEEEcCC
Confidence            445667777776653  34699999999999875  667888775     56799999999874

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=98.27  E-value=3.6e-06  Score=86.45  Aligned_cols=72  Identities=21%  Similarity=0.247  Sum_probs=48.1

Q ss_pred             cCeEEEcccCCCceeEEecCCCCCCC------CCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHH
Q 011610          396 HCTLEVAGKGQFKDEFVTAGGVPLSE------ISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGT  465 (481)
Q Consensus       396 ~~~~~v~~~~~~~~a~vt~GGv~~~e------i~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~  465 (481)
                      .-|++|..+-.     +.+||+.+.-      +++. =+-+.+||||+|||+.  .|+|  ..|-..|.-....|+.++.
T Consensus       391 ~epiPv~ptvh-----y~~ggi~t~~~g~~~~~~~~-g~d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~  464 (642)
T KOG2403|consen  391 KEPIPVLPTVH-----YNMGGIPTNYNGEVLTIREV-GQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACAL  464 (642)
T ss_pred             ccccccCCCcc-----cccCccccCCccceeeeccc-cccccccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            44555555533     4556655431      2222 3578999999999965  5777  4455558899999999999


Q ss_pred             HHhHHhhH
Q 011610          466 SIGKLSND  473 (481)
Q Consensus       466 ~aa~~~~~  473 (481)
                      +++.....
T Consensus       465 ~ia~~~~p  472 (642)
T KOG2403|consen  465 SIAEELRP  472 (642)
T ss_pred             HHHHhcCC
Confidence            99876543

>PRK02106 choline dehydrogenase; Validated

Probab=98.27  E-value=2.4e-05  Score=84.58  Aligned_cols=36  Identities=31%  Similarity=0.521  Sum_probs=32.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...||+||||+|++|+.+|..|++. +|.+|+|||++
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG   38 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAG   38 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCC
Confidence            3569999999999999999999984 68999999966

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.26  E-value=5.9e-06  Score=92.83  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=32.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+||||||||++||+.|++  .|++|+|+|+. .+|
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAG  575 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccC
Confidence            46799999999999999999999  79999999965 454

>TIGR01810 betA choline dehydrogenase

Probab=98.26  E-value=4.5e-05  Score=81.91  Aligned_cols=54  Identities=17%  Similarity=0.156  Sum_probs=37.9

Q ss_pred             HHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc-eEEEEcCeEEEccCCC
Q 011610          168 LLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL-VECIEADYLLIASGSS  224 (481)
Q Consensus       168 l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~-~~~i~ad~VIlAtG~~  224 (481)
                      ++..+. +.|++|+.++.|.+|..++ +...+|++.+  .+. ...+.++.||+|+|+-
T Consensus       199 ~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~--~~~~~~~~~ak~VIlaAGai  254 (532)
T TIGR01810       199 YLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKK--GGRKEHTEANKEVILSAGAI  254 (532)
T ss_pred             HhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEe--CCcEEEEEEeeeEEEccCCC
Confidence            333343 5679999999999999875 4456777653  111 2346889999999973

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.23  E-value=4.6e-06  Score=94.49  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=33.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+|||||||||+||+.|++  .|++|+|+|+. .+|
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~G  342 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLG  342 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCC
Confidence            46899999999999999999999  79999999965 555

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.23  E-value=4.1e-06  Score=85.66  Aligned_cols=33  Identities=36%  Similarity=0.625  Sum_probs=29.4

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ||+|||||+||+++|+.|++..+|++|+|+|+.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~   33 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG   33 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            899999999999999999973249999999965

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.23  E-value=1.7e-05  Score=76.34  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC--eEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR--KFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~--~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +...+...+.+..+..|-.++++-++.++.... +.  .+-+.+.+   +.+++++++.||-|+|-..  ..++...|..
T Consensus       194 D~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~-~~~~~Ypivv~n---gk~ee~r~~~~vtc~gl~s--dr~aa~sgc~  267 (453)
T KOG2665|consen  194 DWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNK-EATFSYPIVVLN---GKGEEKRTKNVVTCAGLQS--DRCAALSGCE  267 (453)
T ss_pred             ehHHHHHHHHHHHHHhcccccccceeccchhcc-CCCCCCceEEec---CccceeEEeEEEEeccccH--hHHHHHhCCC
Confidence            345666677777889999999999999998764 22  23333332   2367899999999999655  3566667765


Q ss_pred             cccCCCceeEeeeC
Q 011610          238 IVDPVPSLFTFKIA  251 (481)
Q Consensus       238 i~~~~p~l~~~~~~  251 (481)
                         +.|..++++-.
T Consensus       268 ---~dPriVpfrG~  278 (453)
T KOG2665|consen  268 ---LDPRIVPFRGE  278 (453)
T ss_pred             ---CCCeeeeccch
Confidence               34566666543

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.22  E-value=2.9e-06  Score=77.11  Aligned_cols=144  Identities=22%  Similarity=0.282  Sum_probs=86.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +.||+|||+|.+||+|||..++++++++|.|||.. .+|       ||.+  .  ..    +++           .... 
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG-------GGaW--L--GG----QLF-----------SAMv-  128 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG-------GGAW--L--GG----QLF-----------SAMV-  128 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC-------Cccc--c--cc----hhh-----------hhhh-
Confidence            46999999999999999999977799999999965 565       2322  1  10    011           1111 


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHH-HHHHHHHhCCCEEEcCceEEEEEecCCC-C--e-------E
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVID-CLLTEAKHRGVVLQTGKVVTTASSDNAG-R--K-------F  197 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~-~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~--~-------~  197 (481)
                      ...+  ..-|+.+.|+++..+.+ ++.-  ..+.-+.. .+.+.+...+|+++.-+.|.++...+.+ +  +       |
T Consensus       129 vRKP--AhLFL~EigvpYedegd-YVVV--KHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNW  203 (328)
T KOG2960|consen  129 VRKP--AHLFLQEIGVPYEDEGD-YVVV--KHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNW  203 (328)
T ss_pred             hcCh--HHHHHHHhCCCcccCCC-EEEE--eeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeee
Confidence            1111  12367788998876543 3321  23333333 3445556678999888888887655311 1  1       3


Q ss_pred             EEEEeecc---cCceEEEEcCeEEEccCCCh
Q 011610          198 LLKVEKRT---MNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       198 ~V~~~~~~---~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .+.+.+..   .-....+++..||-+||.+|
T Consensus       204 tLV~qnHgtQsCMDPNviea~~vvS~tGHDG  234 (328)
T KOG2960|consen  204 TLVTQNHGTQSCMDPNVIEAAVVVSTTGHDG  234 (328)
T ss_pred             EEeeeccCccccCCCCeeeEEEEEEccCCCC
Confidence            33332200   00124689999999999764

>PRK12831 putative oxidoreductase; Provisional

Probab=98.21  E-value=2.9e-06  Score=89.34  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+||+||||||+|++||+.|++  .|++|+|+|+. .+|
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~G  176 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPG  176 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence            356899999999999999999999  79999999965 454

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.21  E-value=1.6e-05  Score=77.49  Aligned_cols=50  Identities=30%  Similarity=0.413  Sum_probs=41.6

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcc
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCAD  107 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~  107 (481)
                      .....||.+|||||..|+.+|..+++  .|.+|.|+|.. .+|        |.|  .|..|.+
T Consensus        16 ~~~k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f~lG--------GTC--Vn~GCVP   66 (478)
T KOG0405|consen   16 ADVKDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPFGLG--------GTC--VNVGCVP   66 (478)
T ss_pred             ccccccceEEEcCCcchhHHhHHHHh--cCceEEEEecCCCcC--------ceE--Eeecccc
Confidence            44468999999999999999999999  79999999965 666        777  5555554

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.19  E-value=9.1e-05  Score=77.80  Aligned_cols=38  Identities=26%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS   88 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~   88 (481)
                      ..+||+|||||++|+++|..|++  .|++|+|+|+. .+|+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG  170 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGG  170 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCc
Confidence            46899999999999999999999  79999999964 4553

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.18  E-value=4e-05  Score=84.66  Aligned_cols=41  Identities=29%  Similarity=0.463  Sum_probs=35.6

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCc
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSK   89 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k   89 (481)
                      .....+|+|||||++|++||+.|++  .|++|+|+| +..+|++
T Consensus       235 ~~~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~GGr  276 (808)
T PLN02328        235 GVEPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPGGR  276 (808)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCCCc
Confidence            3456899999999999999999999  799999999 5577754

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.15  E-value=8.8e-06  Score=91.81  Aligned_cols=37  Identities=30%  Similarity=0.389  Sum_probs=32.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ..+||+||||||||++||+.|++  .|++|+|+|+. .+|
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lG  573 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPG  573 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccC
Confidence            45899999999999999999999  79999999965 444

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.12  E-value=1.4e-05  Score=82.06  Aligned_cols=86  Identities=21%  Similarity=0.236  Sum_probs=61.5

Q ss_pred             CeeeecC--CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHH
Q 011610          152 GRVFPVS--DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHR  229 (481)
Q Consensus       152 g~~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~  229 (481)
                      +.++|.+  .++..++..|.+.+++ |++++++++|++|+.++  +.+.|++.+     +..+.||+||+|+|.+..  .
T Consensus       123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~-----g~~~~a~~vV~a~G~~~~--~  192 (381)
T TIGR03197       123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDAN-----GEVIAASVVVLANGAQAG--Q  192 (381)
T ss_pred             ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCC-----CCEEEcCEEEEcCCcccc--c
Confidence            4455543  2678899999999998 99999999999998764  568888775     556899999999998763  2


Q ss_pred             HHHHcCCCcccCCCceeE
Q 011610          230 LAAQLGHSIVDPVPSLFT  247 (481)
Q Consensus       230 la~~~G~~i~~~~p~l~~  247 (481)
                      +.+...+.+.|.+..++.
T Consensus       193 l~~~~~~pi~p~rg~~~~  210 (381)
T TIGR03197       193 LAQTAHLPLRPVRGQVSH  210 (381)
T ss_pred             ccccccCCccccccceee
Confidence            333334444444433333

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.11  E-value=5.1e-05  Score=83.48  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=32.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+||||||+|++||..|++  .|++|+|+|+. .+|
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~G  363 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIG  363 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence            45799999999999999999999  79999999965 555

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.11  E-value=2.1e-05  Score=76.80  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS   88 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~   88 (481)
                      ....+|+|||+|++||+||+.|++   ..+|+|+|. +..|+
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlGG   44 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLGG   44 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhc---ccceEEEeccccccC
Confidence            356899999999999999999998   469999995 46764

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.10  E-value=3.9e-06  Score=63.73  Aligned_cols=31  Identities=23%  Similarity=0.383  Sum_probs=27.2

Q ss_pred             EECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           55 VVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        55 IIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      |||||++||++|+.|++  .|.+|+|+|+. .+|
T Consensus         1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccC
Confidence            89999999999999999  68999999955 666

...

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.09  E-value=4.3e-06  Score=88.09  Aligned_cols=43  Identities=19%  Similarity=0.419  Sum_probs=38.3

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceE
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK   91 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~   91 (481)
                      .....+|||||||+|||+||.+|.+  .|.+|+|+| |+++|+++.
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVGGRIY   55 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcCceeE
Confidence            3456899999999999999999999  799999999 889997654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.08  E-value=0.00016  Score=76.44  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=32.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ..++|+|||||++|+++|..|++  .|++|+|+|+. .+|
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~G  179 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIG  179 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCC
Confidence            45799999999999999999999  79999999964 555

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.07  E-value=8.6e-05  Score=79.04  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      |||+|||+||+|+++|..|++  .|++|++||++ ..+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccC
Confidence            699999999999999999999  78999999954 444

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.05  E-value=9.5e-06  Score=92.75  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=32.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+|||||||||+||+.|++  .|++|+|+|+. .+|
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCc
Confidence            45799999999999999999999  79999999965 444

>PLN03000 amine oxidase

Probab=98.04  E-value=8.5e-05  Score=82.31  Aligned_cols=39  Identities=26%  Similarity=0.459  Sum_probs=34.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSK   89 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k   89 (481)
                      ...+|+|||||++|+.+|..|++  .|++|+|+| ++.+|+.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riGGR  222 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPGGR  222 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCCCC
Confidence            46899999999999999999999  789999999 5677753

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.04  E-value=7.5e-05  Score=72.52  Aligned_cols=58  Identities=22%  Similarity=0.269  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      .+-+.|....++.|..++.+.+|.+....+ +....|.+.+   .....++||..|+|+|+-
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn---~~diP~~a~~~VLAsGsf  316 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRN---HADIPLRADFYVLASGSF  316 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecc---cccCCCChhHeeeecccc
Confidence            445567888889999999999999998875 3434566653   223578999999999963

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.03  E-value=9.4e-05  Score=79.37  Aligned_cols=36  Identities=36%  Similarity=0.485  Sum_probs=32.8

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...++|+||||+|.+|+.+|..|+.  ++.+|+|||++
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG   39 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAG   39 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCC
Confidence            3467999999999999999999997  89999999965

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.02  E-value=6.7e-05  Score=80.29  Aligned_cols=81  Identities=26%  Similarity=0.269  Sum_probs=60.0

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      ++..+...+...+.++|++|+++++|+++..++ +..+.|++.+..++....+.|+.||+|+|.|.+  .+++.+|.++ 
T Consensus       126 dp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~--~l~~~~g~~~-  201 (516)
T TIGR03377       126 DPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG--RIAEYAGLDI-  201 (516)
T ss_pred             CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH--HHHHhcCCCC-
Confidence            467788889999999999999999999998765 344566664322233457999999999999874  5777777643 


Q ss_pred             cCCCc
Q 011610          240 DPVPS  244 (481)
Q Consensus       240 ~~~p~  244 (481)
                      ++.|.
T Consensus       202 ~i~p~  206 (516)
T TIGR03377       202 RMFPA  206 (516)
T ss_pred             ceecc
Confidence            44444

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.99  E-value=1.8e-05  Score=88.43  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ..+||+||||||||++||..|++  .|++|+|+|+. .+|
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~G  467 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIG  467 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence            46799999999999999999999  79999999964 444

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.97  E-value=7.4e-05  Score=75.33  Aligned_cols=62  Identities=15%  Similarity=0.186  Sum_probs=49.8

Q ss_pred             eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      -||. +....+..++.+.+++.|.+|.++.+|.+|..++ +...+|++.+     |.+++++.||--++
T Consensus       257 ~Yp~-GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~d-----G~ev~sk~VvSNAt  318 (561)
T KOG4254|consen  257 GYPR-GGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLAD-----GTEVRSKIVVSNAT  318 (561)
T ss_pred             cCCC-CChhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecC-----CcEEEeeeeecCCc
Confidence            3443 3355778889999999999999999999999887 6678999998     88999977665444

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.96  E-value=6.7e-05  Score=78.21  Aligned_cols=56  Identities=14%  Similarity=0.122  Sum_probs=40.6

Q ss_pred             CCCCCCCCCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHh
Q 011610          415 GGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA  474 (481)
Q Consensus       415 GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~  474 (481)
                      |+|.++    .+|+.+.+||+|++|++.++......-..+.|..+|..|++++......+
T Consensus       295 G~I~Vd----~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~  350 (424)
T PTZ00318        295 GRISVD----DHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGK  350 (424)
T ss_pred             CcEEeC----CCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence            455543    35788889999999988876543222356789999999999998766443

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.94  E-value=0.00017  Score=56.49  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .|+|||||+.|+-.|..|++  .|.+|+|+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~   31 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERS   31 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHH--hCcEEEEEecc
Confidence            48999999999999999999  78999999965

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.93  E-value=2.7e-05  Score=82.04  Aligned_cols=38  Identities=29%  Similarity=0.396  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...++|+|||||++|+++|..|++  .|++|+|+|+. .+|
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~g  176 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAG  176 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCC
Confidence            345799999999999999999999  78999999965 444

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.87  E-value=8.4e-05  Score=75.67  Aligned_cols=42  Identities=24%  Similarity=0.421  Sum_probs=35.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceE
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK   91 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~   91 (481)
                      ...+|+|||||.||++||.+|.++ ...+|+|+| .+++|+.+.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~dRIGGRI~   62 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEASDRIGGRIH   62 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHh-CCceEEEEEeccccCceEe
Confidence            446999999999999999999974 467899999 678986544

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.87  E-value=0.0005  Score=72.83  Aligned_cols=37  Identities=38%  Similarity=0.548  Sum_probs=33.3

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....||.||||||.||+..|..|++. +..+|+|||++
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaG   90 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAG   90 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecC
Confidence            45689999999999999999999995 67999999965

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.84  E-value=0.00048  Score=75.64  Aligned_cols=37  Identities=22%  Similarity=0.250  Sum_probs=32.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+|||+|++|+++|..|++  .|++|+|+|+. .+|
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~G  346 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIG  346 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCC
Confidence            46899999999999999999999  78999999965 444

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.84  E-value=0.00021  Score=75.26  Aligned_cols=99  Identities=24%  Similarity=0.338  Sum_probs=70.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||++|+-+|..+++  .|.+|+|+|+.. +.              ..  .            .          
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~------------~----------  210 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRIL--------------PG--E------------D----------  210 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCC--------------CC--C------------C----------
Confidence            589999999999999999998  689999999642 11              00  0            0          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      ..+.+.+.+.+++.|++++++++|.+++.++  +.+.+.+.+   +..
T Consensus       211 --------------------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~---g~~  253 (461)
T TIGR01350       211 --------------------------------AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVVYENKG---GET  253 (461)
T ss_pred             --------------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeC---CcE
Confidence                                            0111223345667899999999999998654  455565543   112


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       254 ~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       254 ETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             EEEEeCEEEEecCCccc
Confidence            57999999999998664

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.79  E-value=0.00026  Score=74.66  Aligned_cols=100  Identities=28%  Similarity=0.364  Sum_probs=70.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-+|..+++  .|.+|+++|+.. +.              ..  .            .          
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~------------~----------  212 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRIL--------------PG--E------------D----------  212 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcC--------------Cc--C------------C----------
Confidence            579999999999999999988  688999999642 11              00  0            0          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      .++.+.+.+.+++.|++++++++|.+++.++  +.+.+.+.+  .+..
T Consensus       213 --------------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~--gg~~  256 (462)
T PRK06416        213 --------------------------------KEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLED--GGKE  256 (462)
T ss_pred             --------------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEe--CCee
Confidence                                            0111233445667899999999999998754  456666543  1112


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       257 ~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        257 ETLEADYVLVAVGRRPN  273 (462)
T ss_pred             EEEEeCEEEEeeCCccC
Confidence            67999999999997664

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.75  E-value=9.1e-05  Score=78.18  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+|||||++|+++|..|++  .|++|+|+|+. .+|
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~g  177 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIG  177 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCC
Confidence            45799999999999999999999  78999999965 454

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.74  E-value=0.00027  Score=74.51  Aligned_cols=97  Identities=22%  Similarity=0.306  Sum_probs=71.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-.|..+++  .|.+|+|+|+.. +.              ..  .+                      
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~d----------------------  215 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLL--------------SF--LD----------------------  215 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC--------------Cc--CC----------------------
Confidence            579999999999999999998  789999999542 21              00  00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      .++.+.+.+.+++.|++++++++|+++..++  +.+.+++.+     +
T Consensus       216 --------------------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~-----g  256 (461)
T PRK05249        216 --------------------------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKS-----G  256 (461)
T ss_pred             --------------------------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECC-----C
Confidence                                            0112234445667799999999999998654  456666554     4


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       257 ~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        257 KKIKADCLLYANGRTGN  273 (461)
T ss_pred             CEEEeCEEEEeecCCcc
Confidence            57999999999997654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.73  E-value=0.00014  Score=73.88  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+|||||++|+.+|..|++  .|.+|+++|+. .++
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~g   54 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPG   54 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCC
Confidence            34699999999999999999998  78999999965 444

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.73  E-value=0.00047  Score=69.12  Aligned_cols=60  Identities=13%  Similarity=0.157  Sum_probs=49.6

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ++..++..|.+.+++.|++++.+++|+++..++ +..+.|.+.+     + .+.||.||+|+|++..
T Consensus       135 ~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~-----g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       135 DPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPS-----G-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCC-----C-EEECCEEEEcCChhhh
Confidence            568889999999999999999999999998765 3344677664     3 7999999999998653

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK06370 mercuric reductase; Validated

Probab=97.72  E-value=0.00042  Score=73.14  Aligned_cols=100  Identities=21%  Similarity=0.265  Sum_probs=69.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-+|..+++  .|.+|+|+|+.. +..             .   .+                      
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~-------------~---~~----------------------  211 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLP-------------R---ED----------------------  211 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCc-------------c---cC----------------------
Confidence            589999999999999999998  688999999542 210             0   00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      .++.+.+.+.+++.|++++++++|.++..++  +...|.+..  .+++
T Consensus       212 --------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~--~~~~  255 (463)
T PRK06370        212 --------------------------------EDVAAAVREILEREGIDVRLNAECIRVERDG--DGIAVGLDC--NGGA  255 (463)
T ss_pred             --------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEe--CCCc
Confidence                                            0011223345567899999999999998654  444444431  1124


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       256 ~~i~~D~Vi~A~G~~pn  272 (463)
T PRK06370        256 PEITGSHILVAVGRVPN  272 (463)
T ss_pred             eEEEeCEEEECcCCCcC
Confidence            57999999999997664

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.71  E-value=0.00049  Score=72.05  Aligned_cols=96  Identities=22%  Similarity=0.244  Sum_probs=68.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-+|..+++  .|.+|+|+|+.. +..             .   .            ..         
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~-------------~---~------------~~---------  198 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAASTILP-------------R---E------------EP---------  198 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCccCC-------------C---C------------CH---------
Confidence            479999999999999999998  789999999642 210             0   0            00         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                          +                             +.+.+.+.+++.|++++++++|+++..++  +.+.+..+      +
T Consensus       199 ----~-----------------------------~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~~------g  237 (438)
T PRK07251        199 ----S-----------------------------VAALAKQYMEEDGITFLLNAHTTEVKNDG--DQVLVVTE------D  237 (438)
T ss_pred             ----H-----------------------------HHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEEEEEEC------C
Confidence                0                             01122344567799999999999998653  44545443      4


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       238 ~~i~~D~viva~G~~p~  254 (438)
T PRK07251        238 ETYRFDALLYATGRKPN  254 (438)
T ss_pred             eEEEcCEEEEeeCCCCC
Confidence            67999999999997664

>PRK06116 glutathione reductase; Validated

Probab=97.70  E-value=0.00049  Score=72.35  Aligned_cols=98  Identities=22%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||+|+.|+-.|..+++  .|.+|+++++.. +.             ..                           
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l-------------~~---------------------------  205 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPL-------------RG---------------------------  205 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCc-------------cc---------------------------
Confidence            579999999999999999988  688999998542 11             00                           


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              .++.+.+.+.+++.|++++++++|.+++.++ ++.+.|.+.+     +
T Consensus       206 ~~------------------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~g~~~v~~~~-----g  249 (450)
T PRK06116        206 FD------------------------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNA-DGSLTLTLED-----G  249 (450)
T ss_pred             cC------------------------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcC-CceEEEEEcC-----C
Confidence            00                              0112334455667899999999999998754 3436666654     5


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       250 ~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        250 ETLTVDCLIWAIGREPN  266 (450)
T ss_pred             cEEEeCEEEEeeCCCcC
Confidence            67999999999997653

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.68  E-value=4.7e-05  Score=77.57  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g   87 (481)
                      ++||+|||||++|+++|..|++  .|.+|+|||+ +.+|
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~iG   37 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHIG   37 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence            3799999999999999999998  6899999995 4566

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.66  E-value=0.00015  Score=76.92  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=32.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+|||||++|+.+|..|++  .|++|+|+|+. .+|
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~g  179 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCG  179 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCC
Confidence            34799999999999999999999  78999999965 444

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.65  E-value=0.00012  Score=69.86  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCC------CcEEEEeCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPK------LNVVIIEKGKP   86 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g------~~V~llE~~~~   86 (481)
                      ....|+|||||+.|.++||.|++  .+      ..|+|+|+..+
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~--~~sf~~~~~~ItifEs~~I   50 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTE--HPSFKKGELDITIFESKEI   50 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhc--CCccCCCceeEEEEeeccc
Confidence            44899999999999999999998  34      77999995544

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.64  E-value=0.00057  Score=68.99  Aligned_cols=145  Identities=17%  Similarity=0.259  Sum_probs=73.1

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ......|+|||||-++.-.+..|.+.++..+|.++=|...-...     .-..+.|           .+.  .+.+.. .
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~-----d~s~f~n-----------e~f--~P~~v~-~  247 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM-----DDSPFVN-----------EIF--SPEYVD-Y  247 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---------CCHH-----------GGG--SHHHHH-H
T ss_pred             ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC-----ccccchh-----------hhc--Cchhhh-h
Confidence            34567999999999999999999985444578877764311000     0011111           111  122221 2


Q ss_pred             HhcCChHHHHHHHHhcC-CcceeecCCeeeecCCChHHHHHHHHH-----HH-HhCCCEEEcCceEEEEEecCCCCeEEE
Q 011610          127 FSLHGPMDTMSWFSDHG-VELKTEDDGRVFPVSDSSSSVIDCLLT-----EA-KHRGVVLQTGKVVTTASSDNAGRKFLL  199 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~G-i~~~~~~~g~~~p~~~~a~~~~~~l~~-----~~-~~~Gv~i~~~~~V~~i~~~~~~~~~~V  199 (481)
                      +...+.+.-.+++.+.. ...     +-+      ..++++.+.+     .+ .+..++++.+++|++++..+ ++.+.+
T Consensus       248 f~~l~~~~R~~~l~~~~~~ny-----~~i------~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l  315 (341)
T PF13434_consen  248 FYSLPDEERRELLREQRHTNY-----GGI------DPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRL  315 (341)
T ss_dssp             HHTS-HHHHHHHHHHTGGGTS-----SEB-------HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEE
T ss_pred             hhcCCHHHHHHHHHHhHhhcC-----CCC------CHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEE
Confidence            23333333333333321 000     111      1233333222     22 23358999999999999876 458888


Q ss_pred             EEeecccCceEEEEcCeEEEccC
Q 011610          200 KVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       200 ~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      .+.+...+...++.+|.||+|||
T Consensus       316 ~~~~~~~~~~~~~~~D~VilATG  338 (341)
T PF13434_consen  316 TLRHRQTGEEETLEVDAVILATG  338 (341)
T ss_dssp             EEEETTT--EEEEEESEEEE---
T ss_pred             EEEECCCCCeEEEecCEEEEcCC
Confidence            88765555667899999999999

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=6.2e-05  Score=77.81  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=35.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceE
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK   91 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~   91 (481)
                      ++|+|+|||.|||+||+.|++  +|++|+|+| ++.+|+|..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~GGk~~   40 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVA   40 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccCceee
Confidence            479999999999999999999  899999999 668887654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.63  E-value=0.00089  Score=70.17  Aligned_cols=108  Identities=21%  Similarity=0.284  Sum_probs=75.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-+|..+++  .|.+|+++++.. +.             ..                          .
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l-------------~~--------------------------~  188 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKH--LGKNVRIIQLEDRIL-------------PD--------------------------S  188 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCcEEEEeCCcccC-------------ch--------------------------h
Confidence            579999999999999999988  688899988532 11             00                          0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              ..+.+.+.+.+++.|++++++++|.++..+  ++...+.++      +
T Consensus       189 ~~------------------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~------~  230 (444)
T PRK09564        189 FD------------------------------KEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVTD------K  230 (444)
T ss_pred             cC------------------------------HHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeC------C
Confidence            00                              112334455667789999999999999643  244455554      3


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .++.+|.||+|+|..+. ..+++..|+++
T Consensus       231 ~~i~~d~vi~a~G~~p~-~~~l~~~gl~~  258 (444)
T PRK09564        231 GEYEADVVIVATGVKPN-TEFLEDTGLKT  258 (444)
T ss_pred             CEEEcCEEEECcCCCcC-HHHHHhcCccc
Confidence            47999999999998764 34567777654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.63  E-value=0.00044  Score=72.59  Aligned_cols=98  Identities=20%  Similarity=0.271  Sum_probs=69.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|..|+-.|..+++  .|.+|+++|+....             .     +                     .+
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~-------------l-----~---------------------~~  205 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELI-------------L-----R---------------------GF  205 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCC-------------C-----c---------------------cc
Confidence            469999999999999999988  68899999853210             0     0                     00


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                      +                              .++...+.+.+++.|++++.+++|.++..++  +.+.|.+.+     +.
T Consensus       206 d------------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-----g~  248 (446)
T TIGR01424       206 D------------------------------DDMRALLARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSH-----GE  248 (446)
T ss_pred             C------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcC-----Cc
Confidence            0                              0112233345567899999999999998654  445666554     56


Q ss_pred             EEEcCeEEEccCCChh
Q 011610          211 CIEADYLLIASGSSQQ  226 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~  226 (481)
                      .+.+|.||+|+|..+.
T Consensus       249 ~i~~D~viva~G~~pn  264 (446)
T TIGR01424       249 EIVADVVLFATGRSPN  264 (446)
T ss_pred             EeecCEEEEeeCCCcC
Confidence            7999999999997653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.61  E-value=0.0024  Score=69.12  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+|||+||+|+++|..|++  .|++|+|+|+. .+|
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~G  173 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLG  173 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence            45799999999999999999999  68999999954 554

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.60  E-value=0.00071  Score=71.46  Aligned_cols=101  Identities=28%  Similarity=0.326  Sum_probs=68.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-+|..+++  .|.+|+|+|+. .+.             ..   .            .          
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l-------------~~---~------------d----------  212 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRAL-------------PN---E------------D----------  212 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcC-------------Cc---c------------C----------
Confidence            479999999999999999988  68889999843 211             00   0            0          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      .++.+.+.+.+++.||+++++++|+++..++  +.+.+.+.. .++..
T Consensus       213 --------------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-~~g~~  257 (466)
T PRK07818        213 --------------------------------AEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSK-KDGKA  257 (466)
T ss_pred             --------------------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEe-cCCCe
Confidence                                            0111223345567899999999999997653  445555431 11222


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       258 ~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        258 QELEADKVLQAIGFAPR  274 (466)
T ss_pred             EEEEeCEEEECcCcccC
Confidence            57999999999997654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.56  E-value=0.0011  Score=70.10  Aligned_cols=100  Identities=23%  Similarity=0.308  Sum_probs=68.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||++|+-+|..|++  .|.+|+|+|+.. +.             ..   .            .          
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il-------------~~---~------------~----------  220 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRIL-------------PT---E------------D----------  220 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccC-------------Cc---C------------C----------
Confidence            589999999999999999998  689999999542 11             00   0            0          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEec-CCCCeEEEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSD-NAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~~~~~V~~~~~~~~~  208 (481)
                                                      ..+.+.+.+.+++.|++++++++|.++... + ++...+.+.+   +.
T Consensus       221 --------------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~---g~  264 (472)
T PRK05976        221 --------------------------------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHN---GE  264 (472)
T ss_pred             --------------------------------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeC---Cc
Confidence                                            011122334456779999999999999752 2 2333333332   22


Q ss_pred             eEEEEcCeEEEccCCChh
Q 011610          209 VECIEADYLLIASGSSQQ  226 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g~  226 (481)
                      ..++.+|.||+|+|..+.
T Consensus       265 ~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        265 EKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             eEEEEeCEEEEeeCCccC
Confidence            257999999999997653

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.55  E-value=0.0014  Score=69.18  Aligned_cols=102  Identities=25%  Similarity=0.324  Sum_probs=69.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-.|..+++  .|.+|+|+|+.. +.              ..  .+                      
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il--------------~~--~d----------------------  214 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRIC--------------PG--TD----------------------  214 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCC--------------CC--CC----------------------
Confidence            579999999999999999988  688999999532 21              00  00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      .++.+.+.+.+++.||++++++.|.+++.++  +.+.+.+.....+.+
T Consensus       215 --------------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~  260 (466)
T PRK06115        215 --------------------------------TETAKTLQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAA  260 (466)
T ss_pred             --------------------------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCce
Confidence                                            0011223345566799999999999998653  445444432111224


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      ..+.+|.||+|+|..+.
T Consensus       261 ~~i~~D~vi~a~G~~pn  277 (466)
T PRK06115        261 ETLQADYVLVAIGRRPY  277 (466)
T ss_pred             eEEEeCEEEEccCCccc
Confidence            67999999999997653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.54  E-value=0.0013  Score=68.58  Aligned_cols=107  Identities=23%  Similarity=0.341  Sum_probs=74.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||++|+-+|..|++  .|.+|+++++.. +.              .    .                     .
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~~--------------~----~---------------------~  176 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSERIL--------------N----K---------------------L  176 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCcccC--------------c----c---------------------c
Confidence            589999999999999999998  688999998542 11              0    0                     0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              ..+.+.+.+.+++.||+++++++|.++..++  . + +.+.+     +
T Consensus       177 ~~------------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~-~-v~~~~-----g  217 (427)
T TIGR03385       177 FD------------------------------EEMNQIVEEELKKHEINLRLNEEVDSIEGEE--R-V-KVFTS-----G  217 (427)
T ss_pred             cC------------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC--C-E-EEEcC-----C
Confidence            00                              1112334445667899999999999997542  3 3 34443     5


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .++.+|.||+|+|..+.. .+++.+|+.+
T Consensus       218 ~~i~~D~vi~a~G~~p~~-~~l~~~gl~~  245 (427)
T TIGR03385       218 GVYQADMVILATGIKPNS-ELAKDSGLKL  245 (427)
T ss_pred             CEEEeCEEEECCCccCCH-HHHHhcCccc
Confidence            679999999999987653 4566677654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.54  E-value=0.00084  Score=71.17  Aligned_cols=96  Identities=19%  Similarity=0.236  Sum_probs=68.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|+.|+-.|..+++  .|.+|+|+++..+.             ..   .+                       
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~l-------------~~---~d-----------------------  227 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYAR--LGSRVTILARSTLL-------------FR---ED-----------------------  227 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcCCCC-------------Cc---ch-----------------------
Confidence            479999999999999999988  68899999853211             00   00                       


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                                     ..+.+.+.+.+++.||+++++++|.++..++  +.+.+.+.+      .
T Consensus       228 -------------------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~------g  268 (479)
T PRK14727        228 -------------------------------PLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGH------G  268 (479)
T ss_pred             -------------------------------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcC------C
Confidence                                           0011234445667899999999999998654  456565543      4


Q ss_pred             EEEcCeEEEccCCChh
Q 011610          211 CIEADYLLIASGSSQQ  226 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~  226 (481)
                      ++.+|.||+|+|..+.
T Consensus       269 ~i~aD~VlvA~G~~pn  284 (479)
T PRK14727        269 ELRAEKLLISTGRHAN  284 (479)
T ss_pred             eEEeCEEEEccCCCCC
Confidence            6899999999998764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.54  E-value=0.0012  Score=69.54  Aligned_cols=98  Identities=22%  Similarity=0.349  Sum_probs=68.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||++|+-+|..+++  .|.+|+|+|+.. +.             ..   .            .          
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll-------------~~---~------------d----------  210 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLL-------------PG---E------------D----------  210 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC-------------cc---c------------c----------
Confidence            479999999999999999988  688999998542 11             00   0            0          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      .++.+.+.+.+++.|++++++++|++++.++  ..+.+..+    +..
T Consensus       211 --------------------------------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~~----g~~  252 (458)
T PRK06912        211 --------------------------------EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQALFEYE----GSI  252 (458)
T ss_pred             --------------------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEEEEEEC----Cce
Confidence                                            0112233445667899999999999997653  44444322    112


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       253 ~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        253 QEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             EEEEeCEEEEecCCccC
Confidence            47999999999997654

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.53  E-value=0.0022  Score=66.43  Aligned_cols=63  Identities=27%  Similarity=0.327  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE---EEEEeecccCceEEEE---cCeEEEccCC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF---LLKVEKRTMNLVECIE---ADYLLIASGS  223 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~---~V~~~~~~~~~~~~i~---ad~VIlAtG~  223 (481)
                      ++-.+++.=|.+.++++||+++++++|++|..+..++..   .+...  .++....|.   -|.|++..|+
T Consensus       204 NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS  272 (500)
T PF06100_consen  204 NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGS  272 (500)
T ss_pred             ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCc
Confidence            455677788999999999999999999999875312222   23332  122223332   4788888885

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.52  E-value=0.0013  Score=69.03  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=70.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-.|..+++  .|.+|+|+|+. .+.+             .   .+            .         
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~-------------~---~d------------~---------  207 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLR-------------S---FD------------S---------  207 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCc-------------c---cC------------H---------
Confidence            579999999999999999998  68999999954 2220             0   00            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                       .+.+.+.+.+++.||+++.++.|.++..++ ++.+.+++++     +
T Consensus       208 ---------------------------------~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~-----g  248 (450)
T TIGR01421       208 ---------------------------------MISETITEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFED-----G  248 (450)
T ss_pred             ---------------------------------HHHHHHHHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECC-----C
Confidence                                             011223345567799999999999998653 2335566553     3


Q ss_pred             -EEEEcCeEEEccCCChh
Q 011610          210 -ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 -~~i~ad~VIlAtG~~g~  226 (481)
                       ..+.+|.||+|+|..+.
T Consensus       249 ~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       249 KSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             cEEEEcCEEEEeeCCCcC
Confidence             57999999999997664

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02507 glutathione reductase

Probab=97.52  E-value=0.00081  Score=71.63  Aligned_cols=97  Identities=21%  Similarity=0.231  Sum_probs=68.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-.|..+++  .|.+|+|+++.. +.+             .                           
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~-------------~---------------------------  241 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLR-------------G---------------------------  241 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCc-------------c---------------------------
Confidence            479999999999999988888  688999998532 110             0                           


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              .++.+.+.+.+++.||++++++.|.+++.++  +.+.+.+.+     +
T Consensus       242 ~d------------------------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~-----g  284 (499)
T PLN02507        242 FD------------------------------DEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDH-----G  284 (499)
T ss_pred             cC------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECC-----C
Confidence            00                              0112223344567799999999999998654  455666554     5


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       285 ~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        285 EEFVADVVLFATGRAPN  301 (499)
T ss_pred             cEEEcCEEEEeecCCCC
Confidence            67999999999997654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.52  E-value=0.0009  Score=70.70  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=69.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||+|..|+-.|..|++  .|.+|+++++. .+.             ..   .+            .         
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l-------------~~---~d------------~---------  218 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVL-------------PG---ED------------A---------  218 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCC-------------CC---CC------------H---------
Confidence            479999999999999999988  68899999853 221             00   00            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                       .+.+.+.+.+++.||+++++++|.+++.++  +.+.+.+.+     +
T Consensus       219 ---------------------------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~-----g  258 (466)
T PRK07845        219 ---------------------------------DAAEVLEEVFARRGMTVLKRSRAESVERTG--DGVVVTLTD-----G  258 (466)
T ss_pred             ---------------------------------HHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECC-----C
Confidence                                             011233445567899999999999997654  455566554     5


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       259 ~~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        259 RTVEGSHALMAVGSVPN  275 (466)
T ss_pred             cEEEecEEEEeecCCcC
Confidence            67999999999997654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.50  E-value=0.0011  Score=74.57  Aligned_cols=109  Identities=19%  Similarity=0.289  Sum_probs=76.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+++|||||..|+-+|..|++  .|.+|+|+|+....             ..                      .   .+
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~--~G~~Vtvv~~~~~l-------------l~----------------------~---~l  180 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQN--LGMDVSVIHHAPGL-------------MA----------------------K---QL  180 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--cCCeEEEEccCCch-------------hh----------------------h---hc
Confidence            479999999999999999998  68899999853210             00                      0   00


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                      +                              ....+.+.+.+++.||++++++.|+++..++  ....|++.+     +.
T Consensus       181 d------------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~d-----G~  223 (785)
T TIGR02374       181 D------------------------------QTAGRLLQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKD-----GS  223 (785)
T ss_pred             C------------------------------HHHHHHHHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECC-----CC
Confidence            0                              0011233445567899999999999997543  455677765     67


Q ss_pred             EEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          211 CIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ++.+|.||+|+|..+.. .+++..|+.
T Consensus       224 ~i~~D~Vi~a~G~~Pn~-~la~~~gl~  249 (785)
T TIGR02374       224 SLEADLIVMAAGIRPND-ELAVSAGIK  249 (785)
T ss_pred             EEEcCEEEECCCCCcCc-HHHHhcCCc
Confidence            89999999999977643 466666654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.49  E-value=0.0013  Score=74.08  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=78.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ..++|||||..|+-+|..|++  .|.+|+|+|+....             ..                      .   .+
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~--~G~~VtvVe~~~~l-------------l~----------------------~---~l  185 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKN--LGVETHVIEFAPML-------------MA----------------------E---QL  185 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeccccc-------------hh----------------------h---hc
Confidence            479999999999999999998  68899999853210             00                      0   00


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                      +                              ....+.+.+.+++.||++++++.|.+|..++.+....|.+.+     +.
T Consensus       186 d------------------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d-----G~  230 (847)
T PRK14989        186 D------------------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD-----GS  230 (847)
T ss_pred             C------------------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC-----CC
Confidence            0                              011233445567789999999999999754211334566665     67


Q ss_pred             EEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          211 CIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++.+|.||+|+|..+.. .+++..|+.+
T Consensus       231 ~i~~D~Vv~A~G~rPn~-~L~~~~Gl~~  257 (847)
T PRK14989        231 ELEVDFIVFSTGIRPQD-KLATQCGLAV  257 (847)
T ss_pred             EEEcCEEEECCCcccCc-hHHhhcCccC
Confidence            89999999999987764 3677777654

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.48  E-value=0.00032  Score=70.01  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=45.0

Q ss_pred             HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ..-||.++.+.+|++|...+  .  .|++++     +.+|..|..++|||..+....+.++++..+
T Consensus       268 ~nGGvAvl~G~kvvkid~~d--~--~V~LnD-----G~~I~YdkcLIATG~~Pk~l~~~~~A~~ev  324 (659)
T KOG1346|consen  268 VNGGVAVLRGRKVVKIDEED--K--KVILND-----GTTIGYDKCLIATGVRPKKLQVFEEASEEV  324 (659)
T ss_pred             ccCceEEEeccceEEeeccc--C--eEEecC-----CcEeehhheeeecCcCcccchhhhhcCHHh
Confidence            34589999999999998654  3  466777     889999999999999887666776666543

>PRK14694 putative mercuric reductase; Provisional

Probab=97.48  E-value=0.0015  Score=69.03  Aligned_cols=96  Identities=18%  Similarity=0.324  Sum_probs=67.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|+.|+-.|..|++  .|.+|++++++.+.             ..   .            .           
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~~~l-------------~~---~------------~-----------  217 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFAR--LGSRVTVLARSRVL-------------SQ---E------------D-----------  217 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEECCCCC-------------CC---C------------C-----------
Confidence            479999999999999999988  68889888753221             00   0            0           


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                                     ..+.+.+.+.+++.|+++++++.|.+++.++  +.+.+.+.      +.
T Consensus       218 -------------------------------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~------~~  258 (468)
T PRK14694        218 -------------------------------PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REFILETN------AG  258 (468)
T ss_pred             -------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEC------CC
Confidence                                           0111233445567799999999999998654  44555554      24


Q ss_pred             EEEcCeEEEccCCChh
Q 011610          211 CIEADYLLIASGSSQQ  226 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~  226 (481)
                      ++.+|.||+|+|..+.
T Consensus       259 ~i~~D~vi~a~G~~pn  274 (468)
T PRK14694        259 TLRAEQLLVATGRTPN  274 (468)
T ss_pred             EEEeCEEEEccCCCCC
Confidence            6999999999998764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.47  E-value=0.00098  Score=68.11  Aligned_cols=61  Identities=21%  Similarity=0.227  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE-EEEcCeEEEccCCChhHHHHHHH
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE-CIEADYLLIASGSSQQGHRLAAQ  233 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~-~i~ad~VIlAtG~~g~g~~la~~  233 (481)
                      -...+.+...+.++++||+|++++.|++++.+.      |++++     +. +|.++.||-|+|-.+  ..+.+.
T Consensus       207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~-----g~~~I~~~tvvWaaGv~a--~~~~~~  268 (405)
T COG1252         207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKD-----GEEEIPADTVVWAAGVRA--SPLLKD  268 (405)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEcc-----CCeeEecCEEEEcCCCcC--Chhhhh
Confidence            456777788889999999999999999997542      45543     33 699999999999655  234444

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.46  E-value=0.0013  Score=69.86  Aligned_cols=55  Identities=13%  Similarity=0.215  Sum_probs=41.0

Q ss_pred             HHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          166 DCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       166 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      +.+.+.+++.|+++++++.|+++..++ ++...|.+.+     +.++.+|.||+|+|..+.
T Consensus       235 ~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~-----g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       235 KELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFES-----GKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcC-----CCEEEcCEEEEeeCCCcC
Confidence            344455677899999999999998654 3445566544     457999999999997664

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.45  E-value=0.00027  Score=74.47  Aligned_cols=41  Identities=37%  Similarity=0.430  Sum_probs=33.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      .....+|+||||||||+.||..|++...|++|+|+|+. .++
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            33457999999999999999999863368999999965 554

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.44  E-value=0.0014  Score=68.42  Aligned_cols=111  Identities=25%  Similarity=0.334  Sum_probs=76.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..++|||||+.|+-.|..+++  -|.+|+|+|+. .+..             +   .            +          
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iLp-------------~---~------------D----------  213 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRILP-------------G---E------------D----------  213 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCC-------------c---C------------C----------
Confidence            579999999999999999998  69999999964 3220             0   0            1          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      +++.+.+.+.+++.|++++++++|+.++..+  +.+.+.+++   +..
T Consensus       214 --------------------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~--~~v~v~~~~---g~~  256 (454)
T COG1249         214 --------------------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKD--DGVLVTLED---GEG  256 (454)
T ss_pred             --------------------------------HHHHHHHHHHHHhCCeEEEccceEEEEEecC--CeEEEEEec---CCC
Confidence                                            1122334445556689999999999998765  336677664   111


Q ss_pred             EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ..+.+|.|++|+|..|..-.+ ++..|+++
T Consensus       257 ~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~  286 (454)
T COG1249         257 GTIEADAVLVAIGRKPNTDGLGLENAGVEL  286 (454)
T ss_pred             CEEEeeEEEEccCCccCCCCCChhhcCceE
Confidence            278999999999976543212 44555554

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.43  E-value=0.0018  Score=67.80  Aligned_cols=97  Identities=25%  Similarity=0.252  Sum_probs=68.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|+.|+-.|..+++  .|.+|+|+|+...-             ...           +   .           
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~-------------l~~-----------~---~-----------  198 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFAN--FGSKVTILEAASLF-------------LPR-----------E---D-----------  198 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCC-------------CCC-----------c---C-----------
Confidence            479999999999999999988  68899999864210             000           0   0           


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                                     ..+.+.+.+.+++.||+++++++|.++..++  +.+.+.+++      .
T Consensus       199 -------------------------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~------g  239 (441)
T PRK08010        199 -------------------------------RDIADNIATILRDQGVDIILNAHVERISHHE--NQVQVHSEH------A  239 (441)
T ss_pred             -------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcC------C
Confidence                                           0111234455677899999999999998654  455555542      3


Q ss_pred             EEEcCeEEEccCCChh
Q 011610          211 CIEADYLLIASGSSQQ  226 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~  226 (481)
                      ++.+|.||+|+|..+.
T Consensus       240 ~i~~D~vl~a~G~~pn  255 (441)
T PRK08010        240 QLAVDALLIASGRQPA  255 (441)
T ss_pred             eEEeCEEEEeecCCcC
Confidence            5899999999997664

>PRK13984 putative oxidoreductase; Provisional

Probab=97.42  E-value=0.00046  Score=75.32  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=32.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+|+|||+|++|+++|..|++  .|++|+|+|+. .++
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~g  319 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPG  319 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence            46799999999999999999999  79999999965 444

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.40  E-value=0.0025  Score=67.46  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=69.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..|+|||+|..|+-+|..+++  .|.+|+|+|+.. +.              ..  .            .          
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~------------d----------  223 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFL--------------AA--A------------D----------  223 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccC--------------Cc--C------------C----------
Confidence            589999999999999999988  688999999542 11              00  0            0          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      .++.+.+.+.+++.|++++++++|+++..++  +.+.+...+ ..+..
T Consensus       224 --------------------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~-~~g~~  268 (475)
T PRK06327        224 --------------------------------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTD-ADGEA  268 (475)
T ss_pred             --------------------------------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEe-CCCce
Confidence                                            0111222334556799999999999998654  445555443 11222


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      ..+.+|.||+|+|..+.
T Consensus       269 ~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        269 QTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             eEEEcCEEEEccCCccC
Confidence            57999999999997654

>PRK07846 mycothione reductase; Reviewed

Probab=97.38  E-value=0.0016  Score=68.49  Aligned_cols=96  Identities=25%  Similarity=0.325  Sum_probs=67.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-.|..+++  .|.+|+|+|+.. +.              .  ..+            .         
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll--------------~--~~d------------~---------  207 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLL--------------R--HLD------------D---------  207 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccc--------------c--ccC------------H---------
Confidence            589999999999999999998  789999999642 11              0  000            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                          ++                             .+.+.+ ..+.+++++++++|++++.++  +.+.+.+.+     +
T Consensus       208 ----~~-----------------------------~~~l~~-l~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~-----g  246 (451)
T PRK07846        208 ----DI-----------------------------SERFTE-LASKRWDVRLGRNVVGVSQDG--SGVTLRLDD-----G  246 (451)
T ss_pred             ----HH-----------------------------HHHHHH-HHhcCeEEEeCCEEEEEEEcC--CEEEEEECC-----C
Confidence                00                             011111 123579999999999998654  455666654     5


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       247 ~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        247 STVEADVLLVATGRVPN  263 (451)
T ss_pred             cEeecCEEEEEECCccC
Confidence            68999999999997664

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.30  E-value=0.0029  Score=66.25  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=72.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-.|..|++  .|.+|+|+|+.. +..             .                           
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~~l~~-------------~---------------------------  186 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYE--RGLHPTLIHRSDKINK-------------L---------------------------  186 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCcEEEEecccccch-------------h---------------------------
Confidence            479999999999999999998  689999999542 110             0                           


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              .++.+.+.+.+++.||+++++++|++++.    .  .|++.+     +
T Consensus       187 ~d------------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~--~v~~~~-----g  225 (438)
T PRK13512        187 MD------------------------------ADMNQPILDELDKREIPYRLNEEIDAING----N--EVTFKS-----G  225 (438)
T ss_pred             cC------------------------------HHHHHHHHHHHHhcCCEEEECCeEEEEeC----C--EEEECC-----C
Confidence            00                              01122334455678999999999999852    2  345544     4


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ..+.+|.||+|+|..+.. .+++..|+.+
T Consensus       226 ~~~~~D~vl~a~G~~pn~-~~l~~~gl~~  253 (438)
T PRK13512        226 KVEHYDMIIEGVGTHPNS-KFIESSNIKL  253 (438)
T ss_pred             CEEEeCEEEECcCCCcCh-HHHHhcCccc
Confidence            578999999999977642 3456666654

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.29  E-value=0.00043  Score=69.66  Aligned_cols=46  Identities=22%  Similarity=0.379  Sum_probs=38.3

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceEE
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVKI   92 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~~   92 (481)
                      ..+.++|+|+|||++||++|++|++..+...|+|+| .++.|+.+..
T Consensus         8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen    8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            445689999999999999999999976666778899 5688876654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.28  E-value=0.0029  Score=65.07  Aligned_cols=107  Identities=24%  Similarity=0.254  Sum_probs=74.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+++|||+|+.|+.+|..|++  .|++|+++|.. +++.        +.                       +     .
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~~~~~--------~~-----------------------~-----~  177 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAADRLGG--------QL-----------------------L-----D  177 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcccccch--------hh-----------------------h-----h
Confidence            3699999999999999999999  79999999954 4431        00                       0     0


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE--EEEeeccc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL--LKVEKRTM  206 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--V~~~~~~~  206 (481)
                                                       ..+.+.+.+.+++.|+++++++.+.+++... +....  +....   
T Consensus       178 ---------------------------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~~~~~~~~~~---  220 (415)
T COG0446         178 ---------------------------------PEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTLVVERVVGID---  220 (415)
T ss_pred             ---------------------------------HHHHHHHHHHHHHCCcEEEeCCceEEEEccc-CcceeeEEEEeC---
Confidence                                             0112334455667789999999999998754 22222  34443   


Q ss_pred             CceEEEEcCeEEEccCCChhHHHHHHHc
Q 011610          207 NLVECIEADYLLIASGSSQQGHRLAAQL  234 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g~g~~la~~~  234 (481)
                        +..+.+|.+++++|..+. ..++...
T Consensus       221 --~~~~~~d~~~~~~g~~p~-~~l~~~~  245 (415)
T COG0446         221 --GEEIKADLVIIGPGERPN-VVLANDA  245 (415)
T ss_pred             --CcEEEeeEEEEeeccccc-HHHHhhC
Confidence              678999999999998764 3444443

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.27  E-value=0.0032  Score=66.80  Aligned_cols=100  Identities=17%  Similarity=0.086  Sum_probs=68.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+++|||||+.|+-.|..+++  .|.+|+|+++..+.+             .   .+            +          
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~l~-------------~---~d------------~----------  220 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRSILLR-------------G---FD------------Q----------  220 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--hCCcEEEEEeccccc-------------c---cC------------H----------
Confidence            479999999999999999998  688999987532210             0   00            0          


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                                      ++.+.+.+.+++.||++++++.+.++...+  +.+.|+..+  .+...
T Consensus       221 --------------------------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~--~~~~~  264 (484)
T TIGR01438       221 --------------------------------DCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTD--STNGI  264 (484)
T ss_pred             --------------------------------HHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEec--CCcce
Confidence                                            011233345567799999999999997654  445555543  01124


Q ss_pred             EEEcCeEEEccCCChh
Q 011610          211 CIEADYLLIASGSSQQ  226 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~  226 (481)
                      ++.+|.||+|+|..+.
T Consensus       265 ~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       265 EEEYDTVLLAIGRDAC  280 (484)
T ss_pred             EEEeCEEEEEecCCcC
Confidence            7999999999997653

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.25  E-value=0.00036  Score=67.75  Aligned_cols=36  Identities=25%  Similarity=0.189  Sum_probs=32.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g   87 (481)
                      ++|++|||+|.+|+..|..|++  .|.+|+|+| |+.+|
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCC
Confidence            4899999999999999998888  799999999 66777

>PLN02546 glutathione reductase

Probab=97.24  E-value=0.0037  Score=67.34  Aligned_cols=110  Identities=20%  Similarity=0.213  Sum_probs=72.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-.|..+++  .+.+|+|+|+.. +..                                        .
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~----------------------------------------~  290 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLR----------------------------------------G  290 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--cCCeEEEEEecccccc----------------------------------------c
Confidence            579999999999999998887  678899998532 110                                        0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              ..+.+.+.+.+++.||++++++.|.++...+ ++.+.+.+.+     +
T Consensus       291 ~d------------------------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~-~g~v~v~~~~-----g  334 (558)
T PLN02546        291 FD------------------------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSA-DGSLSLKTNK-----G  334 (558)
T ss_pred             cC------------------------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcC-CCEEEEEECC-----e
Confidence            00                              1112234445667899999999999997643 3445555442     3


Q ss_pred             EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ....+|.||+|+|..+....+ ++.+|+++
T Consensus       335 ~~~~~D~Viva~G~~Pnt~~L~le~~gl~~  364 (558)
T PLN02546        335 TVEGFSHVMFATGRKPNTKNLGLEEVGVKM  364 (558)
T ss_pred             EEEecCEEEEeeccccCCCcCChhhcCCcC
Confidence            444589999999976653222 45556544

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.22  E-value=0.0052  Score=65.02  Aligned_cols=112  Identities=21%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-.|..+++  .|.+|+|+|+.. +.             .+   .+            .         
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il-------------~~---~d------------~---------  215 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVI-------------PA---AD------------K---------  215 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCC-------------Cc---CC------------H---------
Confidence            579999999999999999998  789999999542 21             00   00            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                       ++.+.+.+.+++. +++++++.|.+++.++  +.+.+...+ ..+..
T Consensus       216 ---------------------------------~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~-~~~~~  258 (471)
T PRK06467        216 ---------------------------------DIVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEG-KKAPA  258 (471)
T ss_pred             ---------------------------------HHHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEe-CCCcc
Confidence                                             0111223344455 8899999999998654  445555442 11113


Q ss_pred             EEEEcCeEEEccCCChhHHH-HHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHR-LAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~-la~~~G~~i  238 (481)
                      .++.+|.||+|+|..+.... .++..|+++
T Consensus       259 ~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~  288 (471)
T PRK06467        259 EPQRYDAVLVAVGRVPNGKLLDAEKAGVEV  288 (471)
T ss_pred             eEEEeCEEEEeecccccCCccChhhcCceE
Confidence            57999999999997654321 234445443

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.19  E-value=0.0039  Score=62.72  Aligned_cols=150  Identities=14%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC--ceEEecCCceeeccCCCcchhHHhhccCCCChhchhh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS--KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS  125 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~--k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (481)
                      ..+|++.||-||+-|+.|+.|.+. .+.+++.+|+ +..-.  ..++.   .+++...       |.       ++++ .
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~-~~~~~lFLerkp~F~WHpGmlle---gstlQv~-------Fl-------kDLV-T   64 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEH-SGLKSLFLERKPDFSWHPGMLLE---GSTLQVP-------FL-------KDLV-T   64 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccc-cCcceEEEecCCCCCcCCCcccC---Ccccccc-------ch-------hhhc-c
Confidence            468999999999999999999884 3588999994 44321  11110   0111110       00       1121 1


Q ss_pred             HHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE--EEEee
Q 011610          126 FFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL--LKVEK  203 (481)
Q Consensus       126 ~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--V~~~~  203 (481)
                      ..+..++..+++++.++|--+..-..+..+|   ...++-+++.-.+... -.++++++|++|...+.+....  +.+.+
T Consensus        65 l~~PTs~ySFLNYL~~h~RLy~Fl~~e~f~i---~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~  140 (436)
T COG3486          65 LVDPTSPYSFLNYLHEHGRLYEFLNYETFHI---PRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN  140 (436)
T ss_pred             ccCCCCchHHHHHHHHcchHhhhhhhhcccc---cHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC
Confidence            1122334567777777763222111112222   2345555555555555 6789999999774433123333  44443


Q ss_pred             cccCceEEEEcCeEEEccCCChh
Q 011610          204 RTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                           +.+++|+.||+.+|..+.
T Consensus       141 -----~~~y~ar~lVlg~G~~P~  158 (436)
T COG3486         141 -----GTVYRARNLVLGVGTQPY  158 (436)
T ss_pred             -----CcEEEeeeEEEccCCCcC
Confidence                 569999999999998653

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.19  E-value=0.0028  Score=63.69  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhcc--CCCCcEEEEeCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTV--APKLNVVIIEKG   84 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~--~~g~~V~llE~~   84 (481)
                      +.+..+||+|+||||.|++.|..|..+  .+..+|+|+|..
T Consensus        32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            444579999999999999999888752  135789999954

>TIGR03452 mycothione_red mycothione reductase

Probab=97.13  E-value=0.0041  Score=65.43  Aligned_cols=96  Identities=26%  Similarity=0.325  Sum_probs=66.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||+.|+-.|..+++  .|.+|+++|+.. +.             ..   .+            .         
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll-------------~~---~d------------~---------  210 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLL-------------RH---LD------------E---------  210 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccc-------------cc---cC------------H---------
Confidence            589999999999999999998  689999999542 11             00   00            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                          ++                             ...+.+. .+.+++++++++|.+++.++  +.+.+.+.+     +
T Consensus       211 ----~~-----------------------------~~~l~~~-~~~gI~i~~~~~V~~i~~~~--~~v~v~~~~-----g  249 (452)
T TIGR03452       211 ----DI-----------------------------SDRFTEI-AKKKWDIRLGRNVTAVEQDG--DGVTLTLDD-----G  249 (452)
T ss_pred             ----HH-----------------------------HHHHHHH-HhcCCEEEeCCEEEEEEEcC--CeEEEEEcC-----C
Confidence                00                             0111111 23479999999999998654  456566554     4


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       250 ~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       250 STVTADVLLVATGRVPN  266 (452)
T ss_pred             CEEEcCEEEEeeccCcC
Confidence            57999999999997654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00058 glutathione reductase; Provisional

Probab=97.11  E-value=0.0063  Score=65.54  Aligned_cols=99  Identities=15%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-.|..+++  .|.+|+|+|+.. +.              .                          .
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il--------------~--------------------------~  275 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLL--------------R--------------------------K  275 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHH--cCCcEEEEEeccccc--------------c--------------------------c
Confidence            579999999999999999888  688999998542 11              0                          0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              .++.+.+.+.+++.||++++++.|.++..++ ++.+.+...+    ++
T Consensus       276 ~d------------------------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~-~~~v~v~~~~----~~  320 (561)
T PTZ00058        276 FD------------------------------ETIINELENDMKKNNINIITHANVEEIEKVK-EKNLTIYLSD----GR  320 (561)
T ss_pred             CC------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-CCcEEEEECC----CC
Confidence            00                              0111223345567799999999999998653 2334444322    13


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       321 ~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        321 KYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             EEEECCEEEECcCCCCC
Confidence            57999999999997654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.06  E-value=0.00062  Score=76.16  Aligned_cols=35  Identities=23%  Similarity=0.165  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +...+|+||||||||++||+.|++  .|++|+|+|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence            356799999999999999999999  79999999954

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.02  E-value=0.0007  Score=69.06  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=33.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+++|||||+||+.||+.|++  .|++|.|+||. .+|
T Consensus       123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiG  160 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIG  160 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCccc
Confidence            45789999999999999999999  79999999965 666

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.96  E-value=0.011  Score=57.99  Aligned_cols=97  Identities=19%  Similarity=0.269  Sum_probs=65.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|++|+-+|..+++  .+.+|+++++...-                .  .           .           
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~--~~~~V~~v~~~~~~----------------~--~-----------~-----------  179 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTR--IAKKVTLVHRRDKF----------------R--A-----------E-----------  179 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHh--hcCEEEEEEeCccc----------------C--c-----------C-----------
Confidence            589999999999999999988  57788888753100                0  0           0           


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                         ..+.+.+++. |+++++++.+.++..++  ....+.+.+...+.+
T Consensus       180 -----------------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  222 (300)
T TIGR01292       180 -----------------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNTVTGEE  222 (300)
T ss_pred             -----------------------------------HHHHHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEecCCCce
Confidence                                               0011223445 89999999999997542  333454432122335


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       223 ~~i~~D~vi~a~G~~~~  239 (300)
T TIGR01292       223 EELKVDGVFIAIGHEPN  239 (300)
T ss_pred             EEEEccEEEEeeCCCCC
Confidence            68999999999997654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.92  E-value=0.015  Score=61.36  Aligned_cols=99  Identities=24%  Similarity=0.302  Sum_probs=67.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||+|+.|+-.|..+++  .|.+|+++|+.. +.              .  .                +       
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~--~----------------~-------  208 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRIL--------------P--L----------------E-------  208 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcC--------------c--c----------------h-------
Confidence            579999999999999999998  688999999542 21              0  0                0       


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                       +                              .++.+.+.+.+++. ++++++++|.+++.++ +..+.++..+   +.+
T Consensus       209 -d------------------------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~-~~~v~~~~~~---~~~  252 (460)
T PRK06292        209 -D------------------------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSG-DEKVEELEKG---GKT  252 (460)
T ss_pred             -h------------------------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC-CceEEEEEcC---Cce
Confidence             0                              01122333455667 9999999999998654 2234443221   224


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       253 ~~i~~D~vi~a~G~~p~  269 (460)
T PRK06292        253 ETIEADYVLVATGRRPN  269 (460)
T ss_pred             EEEEeCEEEEccCCccC
Confidence            67999999999997654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.86  E-value=0.0017  Score=71.38  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=32.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ..++|+|||||++|+++|+.|++  .|++|+|+|+. .+|
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~G  229 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAG  229 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Confidence            45799999999999999999999  79999999965 555

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.85  E-value=0.01  Score=61.97  Aligned_cols=59  Identities=17%  Similarity=0.192  Sum_probs=42.1

Q ss_pred             HHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          166 DCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       166 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +.+.+.+++.||+++++++|.++..    +  .|.+++     ++++.+|.||.|+|..+.  .+++.+|+.
T Consensus       232 ~~~~~~L~~~gV~v~~~~~v~~v~~----~--~v~~~~-----g~~i~~d~vi~~~G~~~~--~~~~~~~l~  290 (424)
T PTZ00318        232 KYGQRRLRRLGVDIRTKTAVKEVLD----K--EVVLKD-----GEVIPTGLVVWSTGVGPG--PLTKQLKVD  290 (424)
T ss_pred             HHHHHHHHHCCCEEEeCCeEEEEeC----C--EEEECC-----CCEEEccEEEEccCCCCc--chhhhcCCc
Confidence            4445566788999999999999863    2  245555     568999999999996553  345555543

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.84  E-value=0.0021  Score=67.21  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ....|+||||||||+.||..|+++ .|++|+|+|+. .++
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCc
Confidence            346899999999999999986542 58999999965 555

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=96.74  E-value=0.00088  Score=68.85  Aligned_cols=47  Identities=23%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             HHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          170 TEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       170 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ..+...|.+|+++++|++|+.++  +.+.|.+.+     +.++.||+||+|+..
T Consensus       217 ~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~-----g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  217 LAAEELGGEIRLNTPVTRIERED--GGVTVTTED-----GETIEADAVISAVPP  263 (450)
T ss_dssp             HHHHHHGGGEESSEEEEEEEEES--SEEEEEETT-----SSEEEESEEEE-S-H
T ss_pred             HHHhhcCceeecCCcceeccccc--ccccccccc-----ceEEecceeeecCch
Confidence            33444577999999999999986  778888876     568999999999873

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.74  E-value=0.041  Score=57.13  Aligned_cols=61  Identities=13%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEE
Q 011610          152 GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLI  219 (481)
Q Consensus       152 g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIl  219 (481)
                      ..+||.-+ ..++-+++-+.+.-.|..+.+++.|.+|..++++...+|...      ++++.|+.||.
T Consensus       223 PfLyP~YG-~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~------ge~v~~k~vI~  283 (438)
T PF00996_consen  223 PFLYPLYG-LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE------GEVVKAKKVIG  283 (438)
T ss_dssp             SEEEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET------TEEEEESEEEE
T ss_pred             CEEEEccC-CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC------CEEEEcCEEEE
Confidence            46788665 448888998888889999999999999988651234456654      68999999994

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.71  E-value=0.02  Score=61.22  Aligned_cols=98  Identities=19%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||||..|+-+|..|++  .+.+|+|+|+....                   .           .    ..     
T Consensus       353 k~VvViGgG~~g~E~A~~L~~--~g~~Vtli~~~~~l-------------------~-----------~----~~-----  391 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAG--IVRHVTVLEFADEL-------------------K-----------A----DK-----  391 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHh--cCcEEEEEEeCCcC-------------------C-----------h----hH-----
Confidence            589999999999999999998  57889998842100                   0           0    00     


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                          .+.+.+++ .||++++++.|+++..++ +....|++.+...+..
T Consensus       392 ------------------------------------~l~~~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~~~  434 (515)
T TIGR03140       392 ------------------------------------VLQDKLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDRNSGEE  434 (515)
T ss_pred             ------------------------------------HHHHHHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEECCCCcE
Confidence                                                01122233 589999999999997653 2333466554222334


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      ..+.+|.||+|+|..+.
T Consensus       435 ~~i~~D~vi~a~G~~Pn  451 (515)
T TIGR03140       435 KQLDLDGVFVQIGLVPN  451 (515)
T ss_pred             EEEEcCEEEEEeCCcCC
Confidence            67999999999998765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=96.69  E-value=0.02  Score=57.18  Aligned_cols=102  Identities=20%  Similarity=0.330  Sum_probs=68.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|..|+-.|..|++  .+.+|+++++....                . .            ...+        
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~--~~~~Vtlv~~~~~~----------------~-~------------~~~~--------  187 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGF----------------R-A------------EKIL--------  187 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--hCCEEEEEEECCcc----------------C-C------------CHHH--------
Confidence            589999999999999999998  57889999853210                0 0            0000        


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc-Cce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM-NLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~-~~~  209 (481)
                                                        .+.+.+.+++.||++++++.|+++..++ ++...|++.+... +..
T Consensus       188 ----------------------------------~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~  232 (321)
T PRK10262        188 ----------------------------------IKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNI  232 (321)
T ss_pred             ----------------------------------HHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeE
Confidence                                              1122334456789999999999997543 2333455543111 123


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       233 ~~i~~D~vv~a~G~~p~  249 (321)
T PRK10262        233 ESLDVAGLFVAIGHSPN  249 (321)
T ss_pred             EEEECCEEEEEeCCccC
Confidence            57999999999997664

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.65  E-value=0.021  Score=62.69  Aligned_cols=32  Identities=22%  Similarity=0.111  Sum_probs=28.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-.|..+++  .|.+|+|+|+.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~--~G~eVTLIe~~  344 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTA--LGSEVVSFEYS  344 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHh--CCCeEEEEecc
Confidence            479999999999999988888  68899999954

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.65  E-value=0.0018  Score=64.28  Aligned_cols=36  Identities=36%  Similarity=0.453  Sum_probs=31.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|+|||+||||+.+|..|.++.++++|.|+|+.
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~   54 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKL   54 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecC
Confidence            345999999999999999999886567999999965

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.64  E-value=0.02  Score=55.86  Aligned_cols=39  Identities=26%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             CCCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           44 LTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        44 ~~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      ......++.|+|||||.+|+..|..+.++-+.-+|.|+|
T Consensus        33 ~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve   71 (446)
T KOG3851|consen   33 ARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE   71 (446)
T ss_pred             hhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence            344557899999999999999999998854455899999

>PLN02976 amine oxidase

Probab=96.50  E-value=0.0037  Score=72.35  Aligned_cols=40  Identities=25%  Similarity=0.473  Sum_probs=34.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCce
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV   90 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~   90 (481)
                      ..+||+|||||++|+++|+.|++  .|++|+||| ++.+|+.+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vGGri  732 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGRV  732 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCCCce
Confidence            45899999999999999999999  789999999 45777544

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.40  E-value=0.038  Score=58.25  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=27.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~   83 (481)
                      ..+|+|||||..|+-+|..|++  .|. +|+++++
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~--~G~~~Vtlv~~  305 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKR--LGAESVTIVYR  305 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeee
Confidence            3589999999999999999988  566 7888884

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.39  E-value=0.051  Score=55.26  Aligned_cols=58  Identities=24%  Similarity=0.318  Sum_probs=41.1

Q ss_pred             HHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          167 CLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       167 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      .+.+.+++.||+++.+++|.++.  +  +  .|.+.+     +.++.+|.||+|+|..+.  ..+...|+.
T Consensus       196 ~~~~~l~~~gV~v~~~~~v~~i~--~--~--~v~~~~-----g~~i~~D~vi~a~G~~p~--~~l~~~gl~  253 (364)
T TIGR03169       196 LVLRLLARRGIEVHEGAPVTRGP--D--G--ALILAD-----GRTLPADAILWATGARAP--PWLAESGLP  253 (364)
T ss_pred             HHHHHHHHCCCEEEeCCeeEEEc--C--C--eEEeCC-----CCEEecCEEEEccCCChh--hHHHHcCCC
Confidence            34455677899999999999884  2  3  355554     568999999999998763  344445543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.28  E-value=0.032  Score=53.98  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhc-----cCCCCcEEEEe-CC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKT-----VAPKLNVVIIE-KG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~-----~~~g~~V~llE-~~   84 (481)
                      +..+|+|||+|..||++|+.+.+     .-+..+|.+++ |.
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf   43 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF   43 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence            45799999999999999987776     22557899998 54

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.27  E-value=0.0068  Score=63.40  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=32.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ..+|+|||+||+|+++|..|++  .|++|+++|+. .+|
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~G  159 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDG  159 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCc
Confidence            3799999999999999999999  79999999965 555

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.26  E-value=0.035  Score=56.35  Aligned_cols=31  Identities=29%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCc-EEEEeC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEK   83 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~   83 (481)
                      ..|+|||+|..|+-+|..+++  .|.+ |+|+++
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~  204 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYR  204 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCCeEEEEee
Confidence            479999999999999999887  5776 999884

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.19  E-value=0.056  Score=57.91  Aligned_cols=98  Identities=21%  Similarity=0.268  Sum_probs=66.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||||..|+-+|..|+.  .+.+|+|+++....             .     .           .     .     
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~--~~~~Vtlv~~~~~l-------------~-----~-----------~-----~-----  390 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAG--IVKHVTVLEFAPEL-------------K-----A-----------D-----Q-----  390 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCEEEEEEECccc-------------c-----c-----------c-----H-----
Confidence            589999999999999999998  67889988743210             0     0           0     0     


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                          .+.+.+. ..||++++++.+.++..++ +....|++.+...+..
T Consensus       391 ------------------------------------~l~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~  433 (517)
T PRK15317        391 ------------------------------------VLQDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKDRTTGEE  433 (517)
T ss_pred             ------------------------------------HHHHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEECCCCcE
Confidence                                                0011122 2589999999999998653 2333455553222334


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.|++|+|..+.
T Consensus       434 ~~i~~D~v~~~~G~~p~  450 (517)
T PRK15317        434 HHLELEGVFVQIGLVPN  450 (517)
T ss_pred             EEEEcCEEEEeECCccC
Confidence            57999999999997664

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.10  E-value=0.11  Score=53.56  Aligned_cols=60  Identities=20%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ...+.+.+....+++||+++.++.+.+++....++...|.+.+     +.++.||.||+.+|+.+
T Consensus       254 ~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d-----g~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  254 GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD-----GKTLEADLVVVGIGIKP  313 (478)
T ss_pred             hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc-----CCEeccCeEEEeecccc
Confidence            4556677888889999999999999999876524556788877     78999999999999765

>PRK12831 putative oxidoreductase; Provisional

Probab=95.90  E-value=0.092  Score=55.45  Aligned_cols=32  Identities=28%  Similarity=0.325  Sum_probs=28.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ..+|+|||||..|+-+|..|.+  .|.+|+++++
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r--~Ga~Vtlv~r  312 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALR--LGAEVHIVYR  312 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHH--cCCEEEEEee
Confidence            3589999999999999999998  6888999884

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.89  E-value=0.08  Score=61.17  Aligned_cols=64  Identities=27%  Similarity=0.325  Sum_probs=44.8

Q ss_pred             HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+++.||++++++.|+++..++  ....|++.. ..+.+.++.||.|+++.|-.+. ..++..+|..+
T Consensus       360 ~L~~~GV~i~~~~~v~~i~g~~--~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pn-t~L~~~lg~~~  423 (985)
T TIGR01372       360 EARELGIEVLTGHVVAATEGGK--RVSGVAVAR-NGGAGQRLEADALAVSGGWTPV-VHLFSQRGGKL  423 (985)
T ss_pred             HHHHcCCEEEcCCeEEEEecCC--cEEEEEEEe-cCCceEEEECCEEEEcCCcCch-hHHHHhcCCCe
Confidence            4567799999999999997542  333444431 1123568999999999998775 36777777654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.81  E-value=0.23  Score=50.38  Aligned_cols=49  Identities=18%  Similarity=0.304  Sum_probs=39.0

Q ss_pred             hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          174 HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       174 ~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      +..+.++.+++|..++..+ ++.+.+.+.....++..++..|.||+|||=
T Consensus       290 ~~~v~l~~~~ev~~~~~~G-~g~~~l~~~~~~~~~~~t~~~D~vIlATGY  338 (436)
T COG3486         290 KPDVRLLSLSEVQSVEPAG-DGRYRLTLRHHETGELETVETDAVILATGY  338 (436)
T ss_pred             CCCeeeccccceeeeecCC-CceEEEEEeeccCCCceEEEeeEEEEeccc
Confidence            3468999999999999876 455777776544555678999999999994

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.38  E-value=0.06  Score=55.38  Aligned_cols=43  Identities=33%  Similarity=0.394  Sum_probs=35.5

Q ss_pred             HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      ++.|+++++++.|+.+....    -.|.+.+     ++.+..+++|+|||++
T Consensus       138 ke~gIe~~~~t~v~~~D~~~----K~l~~~~-----Ge~~kys~LilATGs~  180 (478)
T KOG1336|consen  138 KEKGIELILGTSVVKADLAS----KTLVLGN-----GETLKYSKLIIATGSS  180 (478)
T ss_pred             hhcCceEEEcceeEEeeccc----cEEEeCC-----CceeecceEEEeecCc
Confidence            45789999999999998764    3466665     7899999999999984

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.04  E-value=0.036  Score=62.04  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      .-..|.|||.||+||+||-+|-+  .|+.|+|+||. ++|
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVG 1821 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcC
Confidence            45799999999999999999999  79999999954 666

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.53  E-value=0.35  Score=51.10  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~   83 (481)
                      ...|+|||+|..|+-+|..+.+  .|. +|+|+++
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~--~Ga~~Vtvv~r  314 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIR--LGAASVTCAYR  314 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEEe
Confidence            4689999999999999998887  564 6999985

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=94.22  E-value=0.1  Score=52.72  Aligned_cols=62  Identities=19%  Similarity=0.336  Sum_probs=48.3

Q ss_pred             HHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          169 LTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       169 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+.+++.||.++-|..|.++.+..  ....+++.+     +.++..|.||+|+|-.+. ..+++.-|++|
T Consensus       400 ~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~d-----G~~l~tD~vVvavG~ePN-~ela~~sgLei  461 (659)
T KOG1346|consen  400 IEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSD-----GSELRTDLVVVAVGEEPN-SELAEASGLEI  461 (659)
T ss_pred             HHHHHhcCceeccchhhhhhhhhc--cceEEEecC-----CCeeeeeeEEEEecCCCc-hhhccccccee
Confidence            345677899999999999998764  556778887     789999999999997764 45666666655

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=94.08  E-value=0.21  Score=54.23  Aligned_cols=66  Identities=17%  Similarity=0.184  Sum_probs=50.9

Q ss_pred             HHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCccc
Q 011610          167 CLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVD  240 (481)
Q Consensus       167 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~  240 (481)
                      .|...+++.|++++++...+++...  +....++..+     +..+.||.||.|+|-.+. ..+++..|+.+.+
T Consensus       192 lL~~~le~~Gi~~~l~~~t~ei~g~--~~~~~vr~~D-----G~~i~ad~VV~a~GIrPn-~ela~~aGlavnr  257 (793)
T COG1251         192 LLRRKLEDLGIKVLLEKNTEEIVGE--DKVEGVRFAD-----GTEIPADLVVMAVGIRPN-DELAKEAGLAVNR  257 (793)
T ss_pred             HHHHHHHhhcceeecccchhhhhcC--cceeeEeecC-----CCcccceeEEEecccccc-cHhHHhcCcCcCC
Confidence            4555667789999998888887654  3566888887     789999999999996653 4678888887655

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.78  E-value=0.77  Score=49.70  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=28.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-.|..|++  .|.+|+++++.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~--~g~~Vtli~~~  175 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTR--YASKVTVIVRE  175 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHc--cCCEEEEEEeC
Confidence            579999999999999999998  68899999853

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02852 ferredoxin-NADP+ reductase

Probab=93.76  E-value=0.52  Score=49.99  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=20.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKT   71 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~   71 (481)
                      ..+|+|||+|..|+-+|..|++
T Consensus       166 gk~VvVIGgGnvAlD~Ar~L~~  187 (491)
T PLN02852        166 SDTAVVLGQGNVALDCARILLR  187 (491)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh
Confidence            3589999999999999999988

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.71  E-value=0.079  Score=47.17  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +|.|||||..|.+.|..|++  .|.+|.|+.++
T Consensus         1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~   31 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRD   31 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--CTEEEEEETSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--cCCEEEEEecc
Confidence            58999999999999999999  78999999965

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.66  E-value=0.75  Score=52.87  Aligned_cols=31  Identities=32%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      .+|+|||||..|+-+|..+.+  .|.+|+++.+
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R--~Ga~Vtlv~r  478 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKR--LGGNVTIVYR  478 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCEEEEEEe
Confidence            589999999999999999998  6778888874

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.37  E-value=0.89  Score=52.12  Aligned_cols=34  Identities=32%  Similarity=0.456  Sum_probs=27.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~   84 (481)
                      ..+|+|||||..|+-+|..+.+. .| .+|+|+.+.
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~Rl-gGakeVTLVyRr  702 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRV-PGVEKVTVVYRR  702 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhc-CCCceEEEEEcc
Confidence            35899999999999999988874 24 478888853

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.99  E-value=0.24  Score=50.51  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.+|+|||+|-.|..+|..|++++ ..+|+|.+|.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs   34 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRS   34 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCC-CceEEEEeCC
Confidence            368999999999999999999942 2899999976

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.85  E-value=0.14  Score=46.67  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=26.4

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .|.|||+|..|...|..++.  .|++|+++|.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRS   31 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SS
T ss_pred             CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            48999999999999999999  79999999964

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=92.76  E-value=0.64  Score=47.59  Aligned_cols=43  Identities=30%  Similarity=0.526  Sum_probs=33.5

Q ss_pred             HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .+.++.++.+++|..+....    -.|.+.+     + ++..|++|+|||+.+
T Consensus        64 ~~~~i~~~~~~~v~~id~~~----~~v~~~~-----g-~~~yd~LvlatGa~~  106 (415)
T COG0446          64 RATGIDVRTGTEVTSIDPEN----KVVLLDD-----G-EIEYDYLVLATGARP  106 (415)
T ss_pred             HhhCCEEeeCCEEEEecCCC----CEEEECC-----C-cccccEEEEcCCCcc
Confidence            35689999999999997543    3455654     4 889999999999865

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.59  E-value=0.2  Score=53.09  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||+|.+|+.+|..|++  .|.+|+++|+.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~   48 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLE--LGARVTVVDDG   48 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            4589999999999999999998  78999999943

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=92.49  E-value=0.18  Score=44.23  Aligned_cols=31  Identities=23%  Similarity=0.473  Sum_probs=28.5

Q ss_pred             EEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      |+|+|+|..|+..|..|++  .|.+|.++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH--CCCceEEEEccc
Confidence            6899999999999999999  799999999654

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=92.45  E-value=0.14  Score=53.34  Aligned_cols=35  Identities=31%  Similarity=0.521  Sum_probs=32.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +++||+|||+|++|+++|+.|++  .|.+|+|||++.
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence            46899999999999999999999  799999999764

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.45  E-value=0.18  Score=47.80  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++++|||+|..|...|..|.+  .|.+|+++|++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d   32 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRD   32 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcC
Confidence            479999999999999999999  78999999965

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=92.38  E-value=0.38  Score=49.55  Aligned_cols=63  Identities=17%  Similarity=0.111  Sum_probs=43.9

Q ss_pred             eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe-ecccCceEEEEcCeEEEccCC
Q 011610          154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE-KRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~-~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      .||...-...+.+.|.+.+++.|++|+++++|++|..++  +.+.+.+. +     ++.+.||.||+|+-.
T Consensus       189 ~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~~~~~~-----g~~~~~d~vi~a~p~  252 (419)
T TIGR03467       189 LLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA--GGIRALVLSG-----GETLPADAVVLAVPP  252 (419)
T ss_pred             eeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--CcceEEEecC-----CccccCCEEEEcCCH
Confidence            444333233344558888888899999999999999875  44443332 2     467899999998763

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=92.07  E-value=0.11  Score=49.41  Aligned_cols=33  Identities=33%  Similarity=0.606  Sum_probs=27.7

Q ss_pred             EEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      .+|||||+||.+||-.|++..+..+|+|+-...
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            689999999999999999876777787776443

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.02  E-value=0.18  Score=53.16  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=28.6

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .|+|||.|++|+++|..|++  .|++|++.|+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~   32 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRN   32 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHH--CCCEEEEECCC
Confidence            58999999999999999999  79999999954

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.81  E-value=0.23  Score=49.37  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .++|+|||+|+.|...|..|++  .|.+|+++.+.
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLAR--AGLPVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence            4689999999999999999999  78999999974

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=91.78  E-value=0.52  Score=44.49  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      ...|+|||.|-.|..++-.|+|.+- -+++|||.+.+.
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRsGi-g~itlID~D~v~   66 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARSGI-GRITLIDMDDVC   66 (263)
T ss_pred             hCcEEEEecCchhHHHHHHHHHcCC-CeEEEEeccccc
Confidence            4689999999999999999999532 379999977544

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=91.39  E-value=3  Score=48.04  Aligned_cols=34  Identities=32%  Similarity=0.501  Sum_probs=27.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|+|||||..|+-+|..+.+. +|. +|+++++.
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl-~Ga~kVtLVyRr  700 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRV-PGVEKVTVVYRR  700 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHh-CCCceEEEEEcc
Confidence            46899999999999999988873 364 78888853

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=91.14  E-value=0.22  Score=45.67  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=25.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.|.|||.|-.|+.+|..+|+  .|++|+.+|.+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~   32 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDID   32 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-
T ss_pred             CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCC
Confidence            479999999999999999999  79999999954

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=90.98  E-value=0.81  Score=49.13  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=28.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|+|||+|.+|+=.|..|++  ...+|.+.=|.
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~  215 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRR  215 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEec
Confidence            34689999999999999999998  56788877754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=90.06  E-value=0.42  Score=39.22  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|+|||||..|..-+..|.+  .|.+|+|+...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence            35689999999999999999999  78999999965

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=90.01  E-value=0.47  Score=47.32  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      .+.|+|||+|..|.+.|..|++  .|.+|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence            4689999999999999999999  789999999753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=89.98  E-value=0.39  Score=49.11  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||+.|+-+|..|++  .|.+|+++|+.
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~--~g~~Vtlv~~~  173 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCR--AGKAVTLVDNA  173 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--cCCeEEEEecC
Confidence            579999999999999999998  78999999964

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.87  E-value=0.41  Score=47.62  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|.|||+|..|...|..+++  .|++|+++|+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~   34 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFAR--AGHEVRLWDAD   34 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHH--CCCeeEEEeCC
Confidence            479999999999999999999  78999999965

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=89.86  E-value=0.4  Score=49.46  Aligned_cols=32  Identities=31%  Similarity=0.442  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+|+.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~  176 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQ--RRCKVTVIELA  176 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecC
Confidence            579999999999999999998  68999999954

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=89.47  E-value=0.46  Score=46.96  Aligned_cols=30  Identities=27%  Similarity=0.273  Sum_probs=28.1

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      +|+|||+|..|...|..|++  .|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHH--CCCceEEEec
Confidence            69999999999999999999  6899999987

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=89.41  E-value=1.2  Score=45.48  Aligned_cols=55  Identities=20%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          164 VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       164 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +.++-.+...+.|+++..++.|.++..    ..+.+.+.   ++...+|....+|-|||..+
T Consensus       275 l~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~---~g~~~~iPYG~lVWatG~~~  329 (491)
T KOG2495|consen  275 LVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTK---DGEIEEIPYGLLVWATGNGP  329 (491)
T ss_pred             HHHHHHHHhhhccceeecccEEEeecC----cEEEEEcC---CCceeeecceEEEecCCCCC
Confidence            445555666778999999999999863    33444443   23346788899999999644

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=89.33  E-value=1.9  Score=43.41  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN  192 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~  192 (481)
                      ++..+++.-|...++++||++.++.+|.+|..+.
T Consensus       224 NQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~  257 (587)
T COG4716         224 NQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDD  257 (587)
T ss_pred             chHHHHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence            4567788889999999999999999999998764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=89.28  E-value=0.51  Score=47.54  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=29.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.+|.|||+|..|...|..|++  .|++|.+++++
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~   34 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAA--AGADVTLIGRA   34 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHh--cCCcEEEEecH
Confidence            4679999999999999999999  78999999964

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=89.27  E-value=0.51  Score=46.54  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +|+|||+|..|...|..|++  .|.+|+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            69999999999999999998  68999999963

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.24  E-value=0.52  Score=43.28  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=27.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|+|||+|.+++-+|..|++  .+.+|+++=|.
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~  199 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRS  199 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS
T ss_pred             CCCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecC
Confidence            34789999999999999999999  67899998754

...

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.01  E-value=0.65  Score=45.69  Aligned_cols=32  Identities=25%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..+++  .|++|+++|.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~   37 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETT   37 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECC
Confidence            479999999999999999998  79999999954

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=88.87  E-value=0.6  Score=43.52  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ...|+|||||.+|...+..|.+  .|.+|+|++.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp   40 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLK--AGAQLRVIAE   40 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcC
Confidence            3589999999999999999998  7899999874

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.85  E-value=0.57  Score=46.06  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=29.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..+++  .|.+|+++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCC
Confidence            479999999999999999998  78999999954

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.61  E-value=0.59  Score=49.06  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||+|..|+.+|..|++  .|++|+++|+.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~   37 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEK   37 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            4689999999999999999999  79999999964

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=88.50  E-value=0.5  Score=49.98  Aligned_cols=46  Identities=24%  Similarity=0.276  Sum_probs=34.5

Q ss_pred             ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          425 NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       425 ~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                      ++|+ +.+||+|++|++..     |.....+|...|+.|+.++.++...+.+
T Consensus       424 ~~~~-Ts~~gVfa~GD~~~-----g~~~~~~Av~~G~~AA~~i~~~L~g~~~  469 (471)
T PRK12810        424 NAYQ-TSNPKVFAAGDMRR-----GQSLVVWAIAEGRQAARAIDAYLMGSTA  469 (471)
T ss_pred             Cccc-CCCCCEEEccccCC-----CchhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3555 67899999995542     3335789999999999999888765443

>TIGR02053 MerA mercuric reductase

Probab=88.49  E-value=0.55  Score=49.48  Aligned_cols=32  Identities=38%  Similarity=0.457  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||+|+.|+-+|..+++  .|.+|+|+|+.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~  198 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFAR--LGSEVTILQRS  198 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence            589999999999999999998  68999999964

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=88.33  E-value=0.68  Score=48.90  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|+|||.|..|+..|..+++.+.|++|+.+|.+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            5799999999999999999984446889999944

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.30  E-value=0.7  Score=45.53  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..+++  .|++|+++|++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~   36 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVS   36 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            579999999999999999998  78999999964

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.18  E-value=0.67  Score=45.59  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..+++  .|++|+++|++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~   33 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIK   33 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHh--CCCcEEEEeCC
Confidence            369999999999999999998  78999999965

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.85  E-value=0.76  Score=42.69  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=30.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP   86 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~   86 (481)
                      ...|+|||+|..|...|..|++  .|. +++|+|.+.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~--~Gvg~i~lvD~D~v   56 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLAR--AGIGKLILVDFDVV   56 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--cCCCEEEEECCCEE
Confidence            5789999999999999999999  677 6999997643

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK13984 putative oxidoreductase; Provisional

Probab=87.81  E-value=0.58  Score=51.21  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             cccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       426 t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      +|+ +.+||+|++|++   .   +|.++.+|...|+.|+.++.++..
T Consensus       563 ~~~-Ts~~gVfAaGD~---~---~~~~~v~Ai~~G~~AA~~I~~~L~  602 (604)
T PRK13984        563 YGQ-TSIPWLFAGGDI---V---HGPDIIHGVADGYWAAEGIDMYLR  602 (604)
T ss_pred             CCc-cCCCCEEEecCc---C---CchHHHHHHHHHHHHHHHHHHHhc
Confidence            343 579999999944   3   456899999999999999987753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=87.66  E-value=0.88  Score=40.50  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=28.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      ....|+|||||..|..-|..|.+  .|.+|+|+.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKD--TGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEc
Confidence            35789999999999999999988  789999995

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.53  E-value=0.97  Score=45.20  Aligned_cols=32  Identities=25%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|..-|..++.  .|++|+++|..
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~   39 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPA   39 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            579999999999999999998  79999999954

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=87.38  E-value=1.1  Score=39.18  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=29.0

Q ss_pred             CeEEEECC-chHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGg-G~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||+ |..|...|+.|....-..++.|+|.+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            47999999 99999999999985445579999955

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=87.38  E-value=0.8  Score=45.57  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=28.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCC--CcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPK--LNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g--~~V~llE~~   84 (481)
                      ++|.|||+|..|.++|+.|++  .|  ..|+++|++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~   34 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLL--RGLASEIVLVDIN   34 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECC
Confidence            379999999999999999998  56  579999964

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=87.33  E-value=0.81  Score=41.11  Aligned_cols=33  Identities=30%  Similarity=0.296  Sum_probs=28.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|+|+|.+|..||..|..  -|++|+++|..
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~   52 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDER   52 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred             CeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCC
Confidence            4799999999999999999998  68999999943

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=87.30  E-value=0.96  Score=42.05  Aligned_cols=33  Identities=30%  Similarity=0.402  Sum_probs=28.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ....|+|||||..|...|..|.+  .|.+|+|+++
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcC
Confidence            34689999999999999999988  6889999863

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=87.18  E-value=0.8  Score=45.08  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..+++  .|++|+++|++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVS   35 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCC
Confidence            479999999999999999998  78999999964

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.06  E-value=0.95  Score=45.37  Aligned_cols=33  Identities=24%  Similarity=0.251  Sum_probs=29.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+.|.|||+|..|...|..|++  .|++|.++++.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~   36 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAAS--KGVPVRLWARR   36 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            3579999999999999999998  78999999974

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=87.03  E-value=2.3  Score=48.56  Aligned_cols=52  Identities=19%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc----------cC---------------ceEEEEcCeEEEccC
Q 011610          171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT----------MN---------------LVECIEADYLLIASG  222 (481)
Q Consensus       171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~----------~~---------------~~~~i~ad~VIlAtG  222 (481)
                      .+.+.||++.++....++..++++....+++....          ..               ....+.||.||+|.|
T Consensus       649 ~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G  725 (1028)
T PRK06567        649 YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG  725 (1028)
T ss_pred             HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc
Confidence            45677999999999988876541233344443211          01               235799999999999

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=86.91  E-value=0.84  Score=45.71  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=28.5

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +|.|||+|..|...|..|++  .|.+|.+++++
T Consensus         2 kI~IiGaGa~G~ala~~L~~--~g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSS--KKISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHH--CCCeEEEEecC
Confidence            69999999999999999998  68999999974

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=86.85  E-value=0.86  Score=45.29  Aligned_cols=31  Identities=26%  Similarity=0.513  Sum_probs=27.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC-cEEEEeC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK   83 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~   83 (481)
                      ++|.|||+|..|...|+.++.  .|. +|+++|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~--~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAE--KELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHH--cCCCeEEEEeC
Confidence            479999999999999999998  454 8999995

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.74  E-value=0.5  Score=46.88  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=27.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      .-.||+|||||-+|.-||+-||-  --..|+|+|
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAG--iv~hVtllE  384 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLE  384 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHh--hhheeeeee
Confidence            45799999999999999999986  234688888

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=86.56  E-value=1.4  Score=38.09  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~~   84 (481)
                      ....++|||+|-+|-.++..|++  .|.+ |+|+-|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence            45799999999999999999998  5666 8887754

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.39  E-value=1.1  Score=44.45  Aligned_cols=33  Identities=27%  Similarity=0.280  Sum_probs=29.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..+++  .|++|+++|++
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~   36 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVM   36 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            3579999999999999999998  78999999954

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=86.37  E-value=0.75  Score=50.82  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      .+.+||+|++|++   .  .|.....||...|+.|+.++.++..
T Consensus       614 ~Ts~~gVfAaGD~---~--~g~~~vv~Ai~~Gr~AA~~I~~~L~  652 (654)
T PRK12769        614 QTSNPKIFAGGDA---V--RGADLVVTAMAEGRHAAQGIIDWLG  652 (654)
T ss_pred             ccCCCCEEEcCCc---C--CCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            3678999999944   2  2434569999999999999988764

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=86.26  E-value=0.9  Score=48.27  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ..+|+|+|+|++|+.|+..+..  .|.+|.++|.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~  196 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDT  196 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeC
Confidence            5799999999999999998888  6889999994

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=86.20  E-value=0.96  Score=38.92  Aligned_cols=36  Identities=11%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g   87 (481)
                      +..|+|||+|..|...|..|++  .|. +++|+|.+.+-
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~--~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLAR--SGVGKITLVDDDIVE   38 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHH--HTTSEEEEEESSBB-
T ss_pred             CCEEEEECcCHHHHHHHHHHHH--hCCCceeecCCccee
Confidence            3689999999999999999999  465 69999976543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=86.18  E-value=1  Score=43.79  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKGKP   86 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~~~   86 (481)
                      ...|+|||+|..|..+|..|++  .| .+++|+|.+.+
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCEe
Confidence            4689999999999999999999  56 58999996644

>TIGR00518 alaDH alanine dehydrogenase

Probab=86.12  E-value=0.96  Score=46.26  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|+|||+|.+|..+|..|..  .|.+|+++|+.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANG--LGATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence            4679999999999999999998  67899999964

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.89  E-value=1.2  Score=43.72  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|.|||+|..|...|..+++  .|++|+++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCC
Confidence            479999999999999999998  78999999954

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=85.89  E-value=1.1  Score=44.66  Aligned_cols=32  Identities=22%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||+|..|...|..|++  .|++|.+++++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~   33 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLAR--NGHDVTLWARD   33 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            479999999999999999998  78999999965

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=85.80  E-value=0.72  Score=45.17  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|+|||||.+|.-+|..+..  -|.+|+++|.+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n  200 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLN  200 (371)
T ss_pred             CCccEEEECCccccchHHHHHhc--cCCeeEEEecC
Confidence            45799999999999999999888  68999999955

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=85.61  E-value=1.5  Score=44.00  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ...+|+|||+|..|...|+.++.  +++ +|+|+|.+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~   39 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIV   39 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCC
Confidence            34689999999999999999988  564 89999943

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=85.57  E-value=1.1  Score=45.13  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g   87 (481)
                      ....|+|||+|..|..+|..|++  .|. +++|+|.+.+-
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~--aGvg~i~lvD~D~ve   60 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVR--AGIGKLTIADRDYVE   60 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCccc
Confidence            34689999999999999999999  676 79999977543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=85.52  E-value=1.3  Score=36.67  Aligned_cols=30  Identities=30%  Similarity=0.461  Sum_probs=26.5

Q ss_pred             EEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      |+|+|.|..|...|-.|.+  .+.+|+++|++
T Consensus         1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d   30 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRD   30 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH--TTSEEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            7999999999999999998  57799999965

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=85.43  E-value=0.98  Score=45.82  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||.|-.|+..|..+++  .|++|+.+|.+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~--~GHeVv~vDid   32 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAE--LGHEVVCVDID   32 (414)
T ss_pred             CceEEECCchHHHHHHHHHHH--cCCeEEEEeCC
Confidence            479999999999999999999  78999999954

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.04  E-value=1.4  Score=43.71  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +.++|.|||+|..|...|..|++  .|++|.++++..
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~--~G~~V~~~~r~~   37 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASA--NGHRVRVWSRRS   37 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence            34679999999999999999998  789999999753

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=84.95  E-value=1.2  Score=48.99  Aligned_cols=43  Identities=16%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             cccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHh
Q 011610          426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA  474 (481)
Q Consensus       426 t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~  474 (481)
                      +|+ +.+||+|++|   |+.  .|.-.+.+|...|+.|+.++.++..++
T Consensus       595 ~~~-Ts~~gVfA~G---D~~--~g~~~vv~Ai~~Gr~AA~~i~~~l~~~  637 (639)
T PRK12809        595 PTQ-THLKKVFAGG---DAV--HGADLVVTAMAAGRQAARDMLTLFDTK  637 (639)
T ss_pred             Ccc-cCCCCEEEcC---CCC--CCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            343 4679999999   443  232245999999999999999887554

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=84.23  E-value=1.5  Score=44.27  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g   87 (481)
                      ....|+|||+|..|..+|..|++  .|. +++|+|.+.+-
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~Ve   60 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVR--AGVGKVTIVDRDYVE   60 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCccC
Confidence            35789999999999999999999  566 89999976543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=84.08  E-value=1.6  Score=37.85  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL   87 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g   87 (481)
                      .|+|||+|..|...|..|++  .|. +++|+|.+.+-
T Consensus         1 ~VliiG~GglGs~ia~~L~~--~Gv~~i~ivD~d~v~   35 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLAR--SGVGKITLIDFDTVE   35 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCcC
Confidence            48999999999999999999  565 69999976543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PTZ00052 thioredoxin reductase; Provisional

Probab=84.07  E-value=1.4  Score=47.04  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+++|||||+.|+-.|..|++  .|.+|+|+++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence            379999999999999999998  68999999864

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=84.01  E-value=1.8  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.+|.|||+|..|.++|+.|+..+..-.++|+|.+
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~   37 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV   37 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            46999999999999999999884334469999943

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=83.99  E-value=1.7  Score=42.85  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..+++  .|.+|+++|++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~   36 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSD   36 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCC
Confidence            469999999999999999998  78999999954

>PRK13748 putative mercuric reductase; Provisional

Probab=83.62  E-value=1.4  Score=47.72  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||+.|+-.|..+++  .|.+|+|+++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFAR--LGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC
Confidence            579999999999999999998  68999999964

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=83.58  E-value=1.3  Score=46.62  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=28.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~--~G~~Vtlv~~~  304 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALR--LGAEVHCLYRR  304 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCEEEEEeec
Confidence            589999999999999999998  68889999853

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=83.58  E-value=1.4  Score=43.79  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=28.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +.|.|+|+|+.|...|+.|++  .|.+|+++=|++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~--~g~~V~~~~R~~   33 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAK--AGHDVTLLVRSR   33 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHh--CCCeEEEEecHH
Confidence            479999999999999999999  676777777654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=83.52  E-value=2.8  Score=43.60  Aligned_cols=47  Identities=28%  Similarity=0.504  Sum_probs=33.8

Q ss_pred             HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEE--cCeEEEccCCCh
Q 011610          173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIE--ADYLLIASGSSQ  225 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~--ad~VIlAtG~~g  225 (481)
                      .+.|++++.+++|+++..++  +.+.+....    .+..+.  +|+||+|||+.+
T Consensus        55 ~~~gv~~~~~~~V~~id~~~--~~v~~~~~~----~~~~~~~~yd~lIiATG~~p  103 (427)
T TIGR03385        55 KKRGIDVKTNHEVIEVNDER--QTVVVRNNK----TNETYEESYDYLILSPGASP  103 (427)
T ss_pred             HhcCCeEEecCEEEEEECCC--CEEEEEECC----CCCEEecCCCEEEECCCCCC
Confidence            56799999999999998654  544444321    134567  999999999865

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=83.32  E-value=1.4  Score=46.92  Aligned_cols=41  Identities=22%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHh
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA  474 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~  474 (481)
                      .+.+||+|++|++.     .|.....+|...|+.|+.++.++...+
T Consensus       441 ~Ts~~gVfAaGD~~-----~g~~~~~~Av~~G~~AA~~i~~~L~g~  481 (485)
T TIGR01317       441 STSIPGVFAAGDCR-----RGQSLIVWAINEGRKAAAAVDRYLMGS  481 (485)
T ss_pred             eECCCCEEEeeccC-----CCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            56789999999543     244467999999999999998887543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK04148 hypothetical protein; Provisional

Probab=83.12  E-value=1.1  Score=38.58  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=27.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+++||.| .|...|..|++  .|.+|+.+|.+
T Consensus        18 ~kileIG~G-fG~~vA~~L~~--~G~~ViaIDi~   48 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKE--SGFDVIVIDIN   48 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHH--CCCEEEEEECC
Confidence            579999999 99988989998  78999999954

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=83.09  E-value=1.5  Score=45.60  Aligned_cols=31  Identities=19%  Similarity=0.120  Sum_probs=28.7

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +|.|||.|..|+..|..|++  .|++|+++|++
T Consensus         2 kI~vIGlG~~G~~lA~~La~--~G~~V~~~d~~   32 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLAD--LGHEVTGVDID   32 (411)
T ss_pred             EEEEECCCchhHHHHHHHHh--cCCeEEEEECC
Confidence            69999999999999999998  78999999954

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=83.07  E-value=1.6  Score=45.18  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=29.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|+|+|+.|+.+|..++.  .|.+|+++|.+
T Consensus       202 GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d  234 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVD  234 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            4689999999999999999987  68899999854

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=82.83  E-value=1.9  Score=48.46  Aligned_cols=40  Identities=20%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND  473 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~  473 (481)
                      .+.+||+|++|++.     .|.....+|...|+.|+.++.++...
T Consensus       712 ~Ts~~gVfA~GD~~-----~g~~~vv~Av~~G~~AA~~I~~~L~~  751 (752)
T PRK12778        712 QSSIPGIYAGGDIV-----RGGATVILAMGDGKRAAAAIDEYLSS  751 (752)
T ss_pred             CCCCCCEEEeCCcc-----CCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46789999999543     24456899999999999999887653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=82.81  E-value=1.9  Score=39.06  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=28.3

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP   86 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~   86 (481)
                      .|+|||+|..|...|..|++  .|. +++|+|.+.+
T Consensus         1 ~VlViG~GglGs~ia~~La~--~Gvg~i~lvD~D~v   34 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR--SGVGNLKLVDFDVV   34 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCEE
Confidence            48999999999999999999  566 5999997643

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06223 malate dehydrogenase; Reviewed

Probab=82.72  E-value=1.7  Score=43.13  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      .+|.|||+|..|...|..++.  .+. +|+|+|.+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~--~~~~ev~L~D~~   35 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLAL--KELGDVVLFDIV   35 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEEECC
Confidence            689999999999999999998  444 89999953

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=82.68  E-value=1.9  Score=40.00  Aligned_cols=36  Identities=17%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP   86 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~   86 (481)
                      ....|+|||.|..|..+|..|++  .|. +++|+|.+.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCCEE
Confidence            45789999999999999999999  565 7999997643

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=82.51  E-value=2  Score=40.66  Aligned_cols=33  Identities=30%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC---cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL---NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~---~V~llE~~   84 (481)
                      ...|+|+|+|.+|..+|..|.+  .|.   +|.|+|+.
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~--~G~~~~~i~ivdr~   60 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLA--AGAKPENIVVVDSK   60 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHH--cCcCcceEEEEeCC
Confidence            4689999999999999999988  576   48888865

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=82.03  E-value=1.6  Score=40.86  Aligned_cols=36  Identities=28%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ......|.|||+|..|...|--.+.  .|+.|.|+|++
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~--sg~~V~l~d~~   43 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAAT--SGLNVWLVDAN   43 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHh--cCCceEEecCC
Confidence            3456789999999999999988888  79999999965

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=81.92  E-value=1.9  Score=42.33  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=27.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ...|+|||+|-+|.++|+.|++  .|. +|+|++|.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~--~G~~~I~I~nR~  160 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLT--LGVERLTIFDVD  160 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCCEEEEECCC
Confidence            4689999999999999999998  465 57777753

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=81.64  E-value=2.1  Score=45.70  Aligned_cols=33  Identities=24%  Similarity=0.242  Sum_probs=29.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..+++  .|++|+++|+.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~   37 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIR   37 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            3579999999999999999998  79999999954

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=81.45  E-value=2.8  Score=46.74  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|.|||+|..|...|..++.  .|++|+++|.+
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~  345 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDIN  345 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHh--CCCeEEEEeCC
Confidence            34579999999999999999998  79999999954

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]

Probab=81.39  E-value=2  Score=35.89  Aligned_cols=39  Identities=13%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610          358 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH  396 (481)
Q Consensus       358 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~  396 (481)
                      .+-.+.+..+|+.+|+++++.+.+|+.+|+..|.+.+.+
T Consensus        24 GIG~~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~~   62 (121)
T COG0099          24 GIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQN   62 (121)
T ss_pred             cccHHHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHHh
Confidence            455788899999999999999999999999999988874

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=81.28  E-value=2.7  Score=37.81  Aligned_cols=34  Identities=21%  Similarity=0.151  Sum_probs=29.0

Q ss_pred             CCCeEEEECCch-HHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGA-AGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~-aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|+|||+|- +|..+|..|.+  .|.+|+++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~--~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLN--RNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhh--CCCEEEEEECC
Confidence            468999999996 69999999988  67889998864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=81.11  E-value=2  Score=49.87  Aligned_cols=41  Identities=29%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             cccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610          428 ESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND  473 (481)
Q Consensus       428 esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~  473 (481)
                      ..+.+||+|++|   |+.  +|...+.+|...|+.|+.++.++...
T Consensus       716 ~~Ts~pgVFAaG---Dv~--~G~~~vv~Ai~~Gr~AA~~I~~~L~~  756 (1006)
T PRK12775        716 QSTNLPGVFAGG---DIV--TGGATVILAMGAGRRAARSIATYLRL  756 (1006)
T ss_pred             cCCCCCCEEEec---CcC--CCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            356899999999   443  35557899999999999999888643

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=81.09  E-value=2.3  Score=37.95  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=27.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.+|.|||-|..|...|..|++  .|++|.++|+.
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~   33 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRS   33 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESS
T ss_pred             CCEEEEEchHHHHHHHHHHHHh--cCCeEEeeccc
Confidence            3589999999999999999998  79999999965

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=81.05  E-value=2.2  Score=40.90  Aligned_cols=38  Identities=18%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccC---------CCCcEEEEeCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVA---------PKLNVVIIEKGKP   86 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~---------~g~~V~llE~~~~   86 (481)
                      ...+|+|||+|..|...+-.|++.+         .|.+++|+|.+.+
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            4679999999999999999999842         1337888886654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=81.01  E-value=2  Score=44.66  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||.|..|+..|..|++  .|++|+++|++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~   35 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDIN   35 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCC
Confidence            579999999999999999999  78999999954

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=80.72  E-value=2.8  Score=42.99  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=55.5

Q ss_pred             EEEECCchHHHHHHHHHhccCCCC-cEEEEeCCC-CCCceEEe-cCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           53 LVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK-PLSKVKIS-GGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        53 VvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~-~g~k~~~s-G~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      |+|+|+|..|-.+|..|++. ... +|+|.+++. ...++... .+.+.........+...+.... ......+ ...-.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~-~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-~~~dvVi-n~~gp   77 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARR-GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELL-RGCDVVI-NCAGP   77 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCT-TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHH-TTSSEEE-E-SSG
T ss_pred             CEEEcCcHHHHHHHHHHhcC-CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHH-hcCCEEE-ECCcc
Confidence            78999999999999999995 234 899999662 21111100 1233322222222222222211 1111111 11112


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGK  183 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~  183 (481)
                      +....+.+..-+.|+.+...         .........+.+.+++.|+.+..++
T Consensus        78 ~~~~~v~~~~i~~g~~yvD~---------~~~~~~~~~l~~~a~~~g~~~l~~~  122 (386)
T PF03435_consen   78 FFGEPVARACIEAGVHYVDT---------SYVTEEMLALDEEAKEAGVTALPGC  122 (386)
T ss_dssp             GGHHHHHHHHHHHT-EEEES---------S-HHHHHHHCHHHHHHTTSEEE-S-
T ss_pred             chhHHHHHHHHHhCCCeecc---------chhHHHHHHHHHHHHhhCCEEEeCc
Confidence            22345556666666544331         0123445566677777777776654

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=80.55  E-value=3.1  Score=41.53  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=28.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      ..+|.|||+|..|.++|+.|+.  .+.  +++|+|.+
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~--~~~~~el~L~D~~   40 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVN--QGIADELVIIDIN   40 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence            4599999999999999999988  455  79999953

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=80.49  E-value=2.3  Score=42.18  Aligned_cols=31  Identities=23%  Similarity=0.308  Sum_probs=27.4

Q ss_pred             eEEEECCchHHHHHHHHHhccCCC--CcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPK--LNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g--~~V~llE~~   84 (481)
                      .|+|||+|.+|.+.|+.|+.  .|  .+++|+|++
T Consensus         2 kI~IIGaG~vG~~~a~~l~~--~g~~~ei~l~D~~   34 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVN--QGIADELVLIDIN   34 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence            69999999999999999998  45  479999964

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=80.42  E-value=2.5  Score=47.25  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=29.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..++.  .|++|+++|.+
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~  345 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDIN  345 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHh--CCCeEEEEeCC
Confidence            3579999999999999999998  79999999954

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=80.34  E-value=2.7  Score=39.38  Aligned_cols=36  Identities=14%  Similarity=0.220  Sum_probs=30.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP   86 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~   86 (481)
                      ....|+|||+|..|..+|..|++  .|. +++|+|.+.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~--~Gvg~i~lvD~D~v   63 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALAR--SGVGNLKLVDFDVV   63 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCEe
Confidence            35789999999999999999999  565 4999997644

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.31  E-value=2.2  Score=44.67  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=29.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|+|+|+|.+|+++|..|++  .|.+|++.|+.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~--~G~~V~~~d~~   37 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHK--LGANVTVNDGK   37 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            469999999999999999999  79999999954

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=80.31  E-value=2.6  Score=44.94  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=29.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..+++  .|++|+++|+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~--~G~~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLL--AGIDVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            479999999999999999998  79999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	481
2i0z_A	447	Crystal Structure Of A Fad Binding Protein From Bac		1e-45
3v76_A	417	The Crystal Structure Of A Flavoprotein From Sinorh		2e-30
2gqf_A	401	Crystal Structure Of Flavoprotein Hi0933 From Haemo		4e-26

>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases Length = 447

Iteration: 1
 Score =  180 bits (457), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/418 (32%), Positives = 213/418 (50%), Gaps = 52/418 (12%)
Query: 77  NVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDT 135
           NV++++KG  L  K+ ISGGGRCNVTN    D+++   H P G+  F  S FS+    D 
Sbjct: 51  NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV--KHIP-GNGRFLYSAFSIFNNEDI 107
Query: 136 MSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR 195
           +++F + GV+LK ED GR+FPVS+ + SV+D LLT  K  GV ++T   V T   +N   
Sbjct: 108 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQT 167
Query: 196 KFLLKVEKRTMNLVECIEADYLLIA--------SGSSQQGHRLAAQLGHSIVDPVPSLFT 247
           K ++      +   E +E ++++IA        +GS+  G+  A + GH+I +  P    
Sbjct: 168 KAVI------LQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFP---- 217
Query: 248 FKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGP-----------MLVTHWGLS 296
                   TE+  +S    +    L+ +      L+ + P           ML TH+GLS
Sbjct: 218 --------TEVPILSNEPFIRDRSLQGLALRDINLSVLNPKGKAIISHKMDMLFTHFGLS 269
Query: 297 GPVILRLSAWGARYL--FSSCYKGMLTVDFVPDLHIEDM-QSILSQHKIRFAK--QKVLN 351
           GP  LR S +  + L  F +    M ++D +P+ + E + Q +L Q K    K  + VL 
Sbjct: 270 GPAALRCSQFVVKALKKFKTNTIQM-SIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLK 328
Query: 352 SCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEF 411
              PE     R++ ++L +  + G      VS+  + ++ +  K  T+ V G    +  F
Sbjct: 329 GYVPE-----RYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAF 383
Query: 412 VTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK 469
           VT GGV + EI+   M SK    L+F GEVL++ G TGG+N  +A   G IAGT+ G+
Sbjct: 384 VTGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGE 441

>pdb|3V76|A Chain A, The Crystal Structure Of A Flavoprotein From Sinorhizobium Meliloti Length = 417

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 190/405 (46%), Gaps = 53/405 (13%)
Query: 77  NVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDT 135
            V++I+  + P  K++ISGGGRCN TN H + +  L+G+       F  S  + + P D 
Sbjct: 52  RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGN-----PHFCKSALARYRPQDF 106
Query: 136 MSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQ----TGKVVTTASSD 191
           ++    HG+    +  G++F    S+  +I  L  E K  GV L+     G+V  TAS  
Sbjct: 107 VALVERHGIGWHEKTLGQLF-CDHSAKDIIRXLXAEXKEAGVQLRLETSIGEVERTASG- 164
Query: 192 NAGRKFLLKVEKRTMNLVECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVP 243
                       R       ++A  L++ASG        ++   +R+A Q G  +V+  P
Sbjct: 165 -----------FRVTTSAGTVDAASLVVASGGKSIPKXGATGLAYRIAEQFGLPVVETRP 213
Query: 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRL 303
           +L    +  +QL +L  ++     A+ +                +L+TH GLSGP IL++
Sbjct: 214 ALVPLTLDQAQLAKLGALAGVAADAEARFGKAAFREA-------VLITHRGLSGPAILQI 266
Query: 304 SAWGARYLFSSCYKGM-LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKR 362
           S++          +G  + +   PD+   D+ SIL   +    +Q V  +      L +R
Sbjct: 267 SSY--------WREGEEIVLRLXPDI---DIASILKGXRRANGRQAVQTALAD--ILPRR 313
Query: 363 FWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEI 422
             ++      L+G  L A +S+ ++ ++A  ++   ++ AG   ++   VT GGV    +
Sbjct: 314 LAQFFADEAKLTGRXL-ADLSDKTIDALASSIQVWAVKPAGSEGYRTAEVTLGGVDTRAL 372
Query: 423 SLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSI 467
              T ++K  P L+F GE ++V G  GG+NFQ AW+ G++AG  +
Sbjct: 373 DSRTXQAKEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQDV 417

>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus Influenzae Rd Length = 401

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 180/400 (45%), Gaps = 35/400 (8%)
Query: 77  NVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDT 135
           +V + + GK +  K+  SGGG CN TN       +   HY   +  F  S  + +   D 
Sbjct: 29  SVTVFDNGKKIGRKILXSGGGFCNFTNLE-----VTPAHYLSQNPHFVKSALARYTNWDF 83
Query: 136 MSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRG--VVLQTGKVVTTASSDNA 193
           +S  ++ G+    ++ G++F   + +  +++ L +E    G  ++L++         ++ 
Sbjct: 84  ISLVAEQGITYHEKELGQLF-CDEGAEQIVEXLKSECDKYGAKILLRSEVSQVERIQNDE 142
Query: 194 GRKFLLKVEKRTMNLVECIEADYLLIASG--SSQQGHRLAAQLGHSIVDPVPSL--FTFK 249
             +F+L+V          I A   L   G  ++  G+++A Q G  ++ P  SL  FT++
Sbjct: 143 KVRFVLQVNSTQWQCKNLIVATGGLSXPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYR 202
Query: 250 IADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGAR 309
             D  LT LSG+S P  +  L          +  Q   +L TH G+SGP +L++S +   
Sbjct: 203 ETDKFLTALSGISLPVTITALC------GKSFYNQ---LLFTHRGISGPAVLQISNYWQP 253
Query: 310 YLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILG 369
                     + +D +P+ ++E+  +   Q   +   + +L    P+  +    W     
Sbjct: 254 -------TESVEIDLLPNHNVEEEINQAKQSSPKQXLKTILVRLLPKKLV--ELWI---- 300
Query: 370 REGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMES 429
            +G+  D + A++S   + ++   + H      G   ++   VT GGV    IS  T ES
Sbjct: 301 EQGIVQDEVIANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTXGGVDTKVISSKTXES 360
Query: 430 KIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK 469
                L+F GEVL+V G  GG+NFQ AWS  Y    SI +
Sbjct: 361 NQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	481
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	1e-163
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	1e-131
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	1e-129
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3atr_A	453	Conserved archaeal protein; saturating double bond	6e-06
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	2e-05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	4e-05
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	4e-04
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	5e-04

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score =  467 bits (1203), Expect = e-163
 Identities = 128/429 (29%), Positives = 215/429 (50%), Gaps = 28/429 (6%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMIL 111
           ++V+GGG +G+  AI A       NV++++KG K   K+ ISGGGRCNVTN    D+  +
Sbjct: 29  VIVIGGGPSGLMAAIGAA--EEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDE--I 84

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTE 171
             H P   +    S FS+    D +++F + GV+LK ED GR+FPVS+ + SV+D LLT 
Sbjct: 85  VKHIPGNGRFLY-SAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTR 143

Query: 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIAS--------GS 223
            K  GV ++T   V T   +N   K ++            +E ++++IA         GS
Sbjct: 144 LKDLGVKIRTNTPVETIEYENGQTKAVILQTGEV------LETNHVVIAVGGKSVPQTGS 197

Query: 224 SQQGHRLAAQLGHSIVDPVPSLFTFKIADS--QLTELSGVSFPKVVAKLKLENVQRSSPY 281
           +  G+  A + GH+I +  P+       +   +   L G++   +   +     +     
Sbjct: 198 TGDGYAWAEKAGHTITELFPTEVPILSNEPFIRDRSLQGLALRDINLSVLNPKGK---AI 254

Query: 282 LTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGM-LTVDFVPDLHIEDMQSILSQH 340
           ++    ML TH+GLSGP  LR S +  + L       + +++D +P+ + E +   + + 
Sbjct: 255 ISHKMDMLFTHFGLSGPAALRCSQFVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLKQ 314

Query: 341 KIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLE 400
                K+ + N       + +R++ ++L +  + G      VS+  + ++ +  K  T+ 
Sbjct: 315 MKEDPKKGIKNVLK--GYVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVN 372

Query: 401 VAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGG 460
           V G    +  FVT GGV + EI+   M SK    L+F GEVL++ G TGG+N  +A   G
Sbjct: 373 VNGTQSIEKAFVTGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTG 432

Query: 461 YIAGTSIGK 469
            IAGT+ G+
Sbjct: 433 RIAGTTAGE 441

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score =  385 bits (991), Expect = e-131
 Identities = 112/424 (26%), Positives = 194/424 (45%), Gaps = 45/424 (10%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMIL 111
           +V++G GAAG+  AI A        V++I+    P  K++ISGGGRCN TN   A     
Sbjct: 30  VVIIGAGAAGMMCAIEAG--KRGRRVLVIDHARAPGEKIRISGGGRCNFTN-IHASPRNF 86

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTE 171
               P   K    S  + + P D ++    HG+    +  G++F    S+  +I  L+ E
Sbjct: 87  LSGNPHFCK----SALARYRPQDFVALVERHGIGWHEKTLGQLFC-DHSAKDIIRMLMAE 141

Query: 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG--------S 223
            K  GV L+    +       +G  F +     T      ++A  L++ASG        +
Sbjct: 142 MKEAGVQLRLETSIGEVERTASG--FRVTTSAGT------VDAASLVVASGGKSIPKMGA 193

Query: 224 SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLT 283
           +   +R+A Q G  +V+  P+L    +  +QL +L  ++     A+ +            
Sbjct: 194 TGLAYRIAEQFGLPVVETRPALVPLTLDQAQLAKLGALAGVAADAEARFGKAAFR----- 248

Query: 284 QVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIR 343
               +L+TH GLSGP IL++S++             + +  +PD+ I     IL   +  
Sbjct: 249 --EAVLITHRGLSGPAILQISSYWREGEE-------IVLRLMPDIDIAS---ILKGMRRA 296

Query: 344 FAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAG 403
             +Q V  +      L +R  ++      L+G    A +S+ ++ ++A  ++   ++ AG
Sbjct: 297 NGRQAVQTALA--DILPRRLAQFFADEAKLTGRM-LADLSDKTIDALASSIQVWAVKPAG 353

Query: 404 KGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIA 463
              ++   VT GGV    +   TM++K  P L+F GE ++V G  GG+NFQ AW+ G++A
Sbjct: 354 SEGYRTAEVTLGGVDTRALDSRTMQAKEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVA 413

Query: 464 GTSI 467
           G  +
Sbjct: 414 GQDV 417

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score =  381 bits (980), Expect = e-129
 Identities = 108/430 (25%), Positives = 193/430 (44%), Gaps = 49/430 (11%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMIL 111
            +++G GAAG++ A +        +V + + G K   K+ +SGGG CN TN         
Sbjct: 7   NIIIGAGAAGLFCAAQLA--KLGKSVTVFDNGKKIGRKILMSGGGFCNFTN-LEVTPAHY 63

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTE 171
               P   K    S  + +   D +S  ++ G+    ++ G++F   + +  +++ L +E
Sbjct: 64  LSQNPHFVK----SALARYTNWDFISLVAEQGITYHEKELGQLFC-DEGAEQIVEMLKSE 118

Query: 172 AKHRGVVLQTGKVVT--TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG------- 222
               G  +     V+      ++   +F+L+V           +   L++A+G       
Sbjct: 119 CDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQ------WQCKNLIVATGGLSMPGL 172

Query: 223 -SSQQGHRLAAQLGHSIVDPVPSL--FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSS 279
            ++  G+++A Q G  ++ P  SL  FT++  D  LT LSG+S P  +  L  ++     
Sbjct: 173 GATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFY--- 229

Query: 280 PYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQ 339
                   +L TH G+SGP +L++S +             + +D +P+ ++E+    ++Q
Sbjct: 230 ------NQLLFTHRGISGPAVLQISNYWQPTES-------VEIDLLPNHNVEE---EINQ 273

Query: 340 HKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL 399
            K    KQ +         L K+  +  +  +G+  D + A++S   + ++   + H   
Sbjct: 274 AKQSSPKQMLKTILV--RLLPKKLVELWI-EQGIVQDEVIANISKVRVKNLVDFIHHWEF 330

Query: 400 EVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSG 459
              G   ++   VT GGV    IS  TMES     L+F GEVL+V G  GG+NFQ AWS 
Sbjct: 331 TPNGTEGYRTAEVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSS 390

Query: 460 GYIAGTSIGK 469
            Y    SI +
Sbjct: 391 AYACALSISR 400

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Length = 549

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 13/183 (7%)

Query: 46  HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSK--VKISGGGRCNVTNG 103
             +  E  +V+G G  G++  +         N +I+E+GK + +      G  R    N 
Sbjct: 103 PENLTERPIVIGFGPCGLFAGLVL--AQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNP 160

Query: 104 HCA-DKMIL-AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSS 161
                     AG +  G K +             ++ F + G   +     +    +   
Sbjct: 161 ESNVQFGEGGAGTFSDG-KLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKL 219

Query: 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIAS 221
            ++I+ +       G  ++    V     ++       ++   T++  E I++ ++++A 
Sbjct: 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDG------QITGVTLSNGEEIKSRHVVLAV 273

Query: 222 GSS 224
           G S
Sbjct: 274 GHS 276

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 63/378 (16%), Positives = 118/378 (31%), Gaps = 121/378 (32%)

Query: 110 ILAGHYP----RGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---VS--DS 160
           +L  +Y         E R         M T  +        +  +D +VF    VS    
Sbjct: 86  VLRINYKFLMSPIKTEQRQP------SMMTRMYIEQRD---RLYNDNQVFAKYNVSRLQP 136

Query: 161 SSSVIDCLLTEAKHRGVVLQ----TGKVVTTASSDNAGRKFLLKVEKRT------MNLVE 210
              +   LL     + V++     +GK             +  KV+ +       +NL  
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALD---VCLSY--KVQCKMDFKIFWLNLKN 191

Query: 211 CIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKL 270
           C   + +L      +   +L  Q+  +               S+    S +       + 
Sbjct: 192 CNSPETVL------EMLQKLLYQIDPNW-------------TSRSDHSSNIKLRIHSIQA 232

Query: 271 KLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYL--FS-SCYKGMLT------ 321
           +L  + +S PY             L   ++L  +   A+    F+ SC K +LT      
Sbjct: 233 ELRRLLKSKPYEN----------CL---LVLL-NVQNAKAWNAFNLSC-KILLTTRFKQV 277

Query: 322 VDFVP-----DLHIEDMQSILSQHKIR--FAKQKVLNSCPPEFCLVKRFWKYILGREGLS 374
            DF+       + ++     L+  +++    K   L+  P +           L RE L+
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQD-----------LPREVLT 324

Query: 375 GDTLWASVSNNSLIS-IARLLKH--CTLEVAGKGQFK----DEFVTAGGVPLSEISLNTM 427
            +           +S IA  ++    T +      +K    D+  T       E SLN +
Sbjct: 325 TNPR--------RLSIIAESIRDGLATWD-----NWKHVNCDKLTTI-----IESSLNVL 366

Query: 428 ESKIHPRLFFAGEVLNVD 445
           E   + ++F    V    
Sbjct: 367 EPAEYRKMFDRLSVFPPS 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 315 CYKGMLTV---DFVPDL---HIED-MQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYI 367
            YK +L+V    FV +     ++D  +SILS+ +I      ++ S       ++ FW   
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----DHIIMSKDAVSGTLRLFW--T 70

Query: 368 LGREGLSG-------------DTLWASVS--NNSLISIARLLKHCTLEVAGKGQ-FKDEF 411
           L  +                   L + +         + R+       +    Q F    
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 412 VTAGGVPLSEISLNTMESKIHPRLF-----------FAGEVLNVDGVTGGFNFQNAWSGG 460
           V+    P  ++    +E +    +             A +V     V    +F+  W   
Sbjct: 131 VSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--- 186

Query: 461 YIAGTSIGKLSNDATL 476
                ++   ++  T+
Sbjct: 187 ----LNLKNCNSPETV 198

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 42/192 (21%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMIL 111
           +++GGG A   G+  A  ++ + L +++++         K  G                 
Sbjct: 10  LIIGGGFA---GSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV-------------- 52

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDH---GVELKTEDDGRVFPVSDSSSSVI--- 165
                    +         G         ++   G++L + D   V+ V+     +    
Sbjct: 53  ---SKAHFDKL--------GMPYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELNAPL 101

Query: 166 --DCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223
               +L EA+ RGV +           ++ G      +  R  N    + +  ++ A+G 
Sbjct: 102 YNQRVLKEAQDRGVEIWDLTTAMKPIFED-GYVKGAVLFNRRTNEELTVYSKVVVEATGY 160

Query: 224 SQQGHRLAAQLG 235
           S+      ++L 
Sbjct: 161 SR---SFRSKLP 169

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 55  VVGGGAAGVYGAIRAKTVAPKL-----NVVIIEKGKPLSKVKISGGGRCNVTNGHCADKM 109
           ++G G +G+   +RA   A +       +V  EK           GG+ N T     D+ 
Sbjct: 7   ILGAGPSGM-AQLRAFQSAQEKGAEIPELVCFEKQADW-------GGQWNYTWRTGLDEN 58

Query: 110 ILAGHYPRGHKEFRGSFFSLH--GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDC 167
               H           +  L   GP + +  F+D+  +         +P       + D 
Sbjct: 59  GEPVHSS--------MYRYLWSNGPKECLE-FADYTFDEHFGKPIASYP---PREVLWDY 106

Query: 168 LLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 222
           +    +  GV   ++    V     +   + F + V+  T + +   E DY++  +G
Sbjct: 107 IKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTG 163

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 44/205 (21%), Positives = 64/205 (31%), Gaps = 37/205 (18%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAG 113
           +V+G G AG   A           V I+EK K    V I            C + +  AG
Sbjct: 9   LVIGAGPAGTVAASLVN--KSGFKVKIVEKQKFPRFV-IGES-----LLPRCMEHLDEAG 60

Query: 114 HYPR----GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVID--- 166
                   G ++  G+ F   G       FSD             F    + +  +    
Sbjct: 61  FLDAVKAQGFQQKFGAKFV-RGKEIADFNFSDQ------------FSNGWNWTWQVPRGN 107

Query: 167 ---CLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223
               L  EA  +GV ++    VT           +  +E    N  E IEA +++ ASG 
Sbjct: 108 FDKTLADEAARQGVDVEYEVGVTDIKFFGTDS--VTTIEDINGNKRE-IEARFIIDASG- 163

Query: 224 SQQGHRLAAQLGHSIVDPVPSLFTF 248
              G  +    G        S  T 
Sbjct: 164 --YGRVIPRMFGLDKPSGFESRRTL 186

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 54 VVVGGGAAGVYGAIRAKTVA----PKLNVVIIEKGKPLSKVKISG 94
          V+VG G AG+  A R K +A      L V ++EK   +    +SG
Sbjct: 39 VIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSG 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	481
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	100.0
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	100.0
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	100.0
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.93
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.93
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.92
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.92
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.92
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.92
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.92
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.91
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.89
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.86
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.86
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.86
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.86
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.82
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.8
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.79
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.48
3dme_A	369	Conserved exported protein; structural genomics, P	99.47
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.47
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.42
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.42
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.41
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.41
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.41
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.41
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.41
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	99.41
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.39
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.37
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.36
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.35
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.31
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.31
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.26
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.25
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.25
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.24
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.24
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.23
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.22
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.22
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.22
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.22
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.21
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.18
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.18
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.18
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.18
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.16
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.16
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.15
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.14
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.14
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.14
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.13
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.12
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.12
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.11
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.11
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.1
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.09
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.09
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.09
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.09
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.07
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.06
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.06
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.06
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.05
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.03
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.03
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.03
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.03
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.03
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.03
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.02
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.02
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.02
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.01
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.01
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.99
4dna_A	463	Probable glutathione reductase; structural genomic	98.97
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.97
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.96
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.96
3atr_A	453	Conserved archaeal protein; saturating double bond	98.95
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.95
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.95
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.95
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.95
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.95
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.94
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.94
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.92
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.92
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.91
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.91
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.91
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.91
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.9
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.9
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.9
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.9
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.89
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.87
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.87
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.87
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.86
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.86
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.85
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.85
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.84
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.84
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.83
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.82
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.8
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.8
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.79
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.79
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.79
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.79
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.79
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.78
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.78
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.78
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.78
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.78
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.77
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.77
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.77
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.76
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.76
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.74
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.74
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.74
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.73
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.72
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.72
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.71
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.71
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.71
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.68
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.67
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.67
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.66
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.66
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.66
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.65
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.65
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.62
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.62
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.62
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.62
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.59
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.58
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.58
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.56
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.56
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.55
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.54
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.52
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.52
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.51
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.5
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.49
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.48
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.47
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.46
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.45
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.45
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.43
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.42
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.41
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.4
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.36
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.35
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.35
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.35
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.34
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.31
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.31
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.28
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.25
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.23
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.22
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.22
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.14
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.13
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.11
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.11
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.07
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.03
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.02
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.01
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.99
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.97
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.96
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.96
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.94
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.91
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.88
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.86
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.86
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.85
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.84
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.83
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.83
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.83
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.79
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.78
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.76
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.74
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.74
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.73
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.73
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.72
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.68
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.67
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.67
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.67
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.64
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.64
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.63
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.62
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.57
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.55
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.55
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.54
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.52
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.46
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.44
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.39
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.37
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.36
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.33
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.29
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.28
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.22
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.22
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.21
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.2
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.2
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.11
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.1
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.1
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.01
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.99
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.98
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.88
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.85
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.73
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.71
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.44
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.43
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.42
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.35
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.2
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.97
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.87
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.78
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.68
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.13
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.12
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	94.93
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.83
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.25
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	94.03
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.99
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.89
4fk1_A	304	Putative thioredoxin reductase; structural genomic	93.68
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.53
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.2
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.15
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	92.06
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	91.98
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	91.8
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	91.76
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	91.53
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.52
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	91.44
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	91.22
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.09
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.05
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	90.99
2cul_A	232	Glucose-inhibited division protein A-related PROT	90.92
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	90.76
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	90.39
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	90.27
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	90.22
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.99
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	89.39
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.16
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	89.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.93
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	88.87
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	88.82
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	88.77
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	88.71
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	88.69
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.51
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	88.5
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	88.45
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	88.43
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	88.4
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.35
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	88.34
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	88.26
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	88.22
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.21
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.2
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	88.0
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	87.69
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	87.65
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	87.31
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	87.27
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.22
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	87.21
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.12
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	87.12
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	86.81
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	86.69
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	86.63
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	86.57
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	86.57
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	86.38
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	86.38
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	86.35
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	86.26
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	86.22
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	86.0
3r8n_M	114	30S ribosomal protein S13; protein biosynthesis, R	85.89
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	85.85
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	85.84
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	85.76
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	85.76
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	85.73
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	85.68
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	85.4
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	85.37
3qha_A	296	Putative oxidoreductase; seattle structural genomi	85.34
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	85.23
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	85.19
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	85.11
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	85.05
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	85.02
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	84.96
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	84.53
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	84.45
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	84.43
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	84.38
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	84.33
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	84.07
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	84.05
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	83.89
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	83.68
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	83.67
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	83.67
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	83.59
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	83.5
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	83.45
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	83.44
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	83.37
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	83.32
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	83.27
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	83.22
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	83.22
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	83.17
4ezb_A	317	Uncharacterized conserved protein; structural geno	83.14
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	83.06
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	82.99
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	82.89
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	82.82
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	82.7
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	82.66
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	82.64
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	82.47
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	82.32
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	82.28
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	82.21
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	82.19
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	82.01
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	81.98
3tl2_A	315	Malate dehydrogenase; center for structural genomi	81.93
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	81.84
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	81.78
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	81.55
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	81.31
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	81.24
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	81.2
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	81.16
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	81.15
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	81.05
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	80.85
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	80.81
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	80.65
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	80.53
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	80.39
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	80.36
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	80.3
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	80.24
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	80.18

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.8e-74  Score=592.01  Aligned_cols=380  Identities=29%  Similarity=0.507  Sum_probs=334.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|++||+.|++  .|.+|+|||+. .+++++.++|+|+||+++.....     ..|......+....+
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~--~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~-----~~~~~~~~~~~~~~l   98 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGK--RGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASP-----RNFLSGNPHFCKSAL   98 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSG-----GGEEESSTTTTHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCH-----HHHhhcCHHHHHHHH
Confidence            46899999999999999999999  79999999965 67889999999999999865322     123233344556677


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                      ..|.+.+..+|++..|+++.....+++|| ...+..+.+.|.+.+++.|++|+++++|+++..++  +.+.|.+.+    
T Consensus        99 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~-~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~----  171 (417)
T 3v76_A           99 ARYRPQDFVALVERHGIGWHEKTLGQLFC-DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA--SGFRVTTSA----  171 (417)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECSTTEEEE-SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TEEEEEETT----
T ss_pred             HhcCHHHHHHHHHHcCCCcEEeeCCEEee-CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CEEEEEECC----
Confidence            89999999999999999999888899998 67888999999999999999999999999998875  668888774    


Q ss_pred             ceEEEEcCeEEEccCCC--------hhHHHHHHHcCCCcccCCCceeEeeeCc---cccccccCceeccEEEEEEecCcc
Q 011610          208 LVECIEADYLLIASGSS--------QQGHRLAAQLGHSIVDPVPSLFTFKIAD---SQLTELSGVSFPKVVAKLKLENVQ  276 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~--------g~g~~la~~~G~~i~~~~p~l~~~~~~~---~~~~~l~G~~~~~~~~~~~~~~~~  276 (481)
                       + +++||.||+|||+.        ++++.+++++|+++.++.|+++++.+.+   ++++.|+|++++ +.+++  ++  
T Consensus       172 -g-~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~~l~G~~~~-~~~~~--~~--  244 (417)
T 3v76_A          172 -G-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLPVVETRPALVPLTLDQAQLAKLGALAGVAAD-AEARF--GK--  244 (417)
T ss_dssp             -E-EEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCCEEEEEEESCCEECCHHHHHHTGGGTTCEEE-EEEEE--TT--
T ss_pred             -c-EEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCCEecccceeeeEEecCccccccccCCCCcee-EEEEE--CC--
Confidence             4 89999999999964        4789999999999999999999999987   667899999986 66554  32  


Q ss_pred             CCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCc
Q 011610          277 RSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPE  356 (481)
Q Consensus       277 ~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  356 (481)
                           ....||++|||+|+|||+||++|+++.+       ...+.||++|+++.+++   +.+....++++.+.+.+.. 
T Consensus       245 -----~~~~~~~lft~~G~sGp~il~~S~~~~~-------~~~~~id~~p~~~~~~~---~~~~~~~~~~~~~~~~l~~-  308 (417)
T 3v76_A          245 -----AAFREAVLITHRGLSGPAILQISSYWRE-------GEEIVLRLMPDIDIASI---LKGMRRANGRQAVQTALAD-  308 (417)
T ss_dssp             -----EEEEEEEEECSSEEESHHHHHHTTTCCT-------TCCEEEEESTTSCHHHH---HHHHHHHTCSSBHHHHHTT-
T ss_pred             -----EeeeeeeEEECCCcchHHHHHHHHHhhC-------CCEEEEECCCCCCHHHH---HHHHHHhchhhhHHHHHHH-
Confidence                 3467899999999999999999998632       24688999999997654   5566677888889988887 


Q ss_pred             cchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeE
Q 011610          357 FCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLF  436 (481)
Q Consensus       357 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy  436 (481)
                       .||+|+++.+++.+++ +++++++++++++++|++.||+++|+++|+.+|++|+||+|||+++||||+|||||.+||||
T Consensus       309 -~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~a~vt~GGV~~~ei~~~tmesk~~~gLy  386 (417)
T 3v76_A          309 -ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQVWAVKPAGSEGYRTAEVTLGGVDTRALDSRTMQAKEVPGLY  386 (417)
T ss_dssp             -TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHSEEECCCEECCTTTCSEEEEEECGGGBCTTTCBBTTSTTEE
T ss_pred             -HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcCCEEEecccCCcceEEEeCCCCccccCChhhccccCCCCeE
Confidence             8999999999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecccCcchHHHHHHHHHHHHHHHHH
Q 011610          437 FAGEVLNVDGVTGGFNFQNAWSGGYIAGTSI  467 (481)
Q Consensus       437 ~~GE~ldv~g~~GGynl~~A~~sG~~AG~~a  467 (481)
                      ||||+|||||+||||||||||+|||+||+++
T Consensus       387 ~aGE~lD~~~~~GGynlq~a~stG~~ag~~~  417 (417)
T 3v76_A          387 FVGECVDVTGWLGGYNFQWAWASGFVAGQDV  417 (417)
T ss_dssp             ECGGGBSEEECSSSHHHHHHHHHHHHHHHHC
T ss_pred             EEEEeEecccCCCCHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999999863

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=100.00  E-value=4.8e-70  Score=560.70  Aligned_cols=382  Identities=27%  Similarity=0.441  Sum_probs=327.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+|||||++|+++|+.|++  .|.+|+|||+. .+++++.++|+|+||++|..+.+     ..+......+....+.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~--~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~-----~~~~~~~~~~~~~~l~   76 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTP-----AHYLSQNPHFVKSALA   76 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCG-----GGEECSCTTSTHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHh--CCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCH-----HHhccCCHHHHHHHHH
Confidence            4899999999999999999999  78999999976 57888889999999999865432     1222233445556678


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEec----CCCCeEEEEEeec
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSD----NAGRKFLLKVEKR  204 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~----~~~~~~~V~~~~~  204 (481)
                      .|++.+..+|++.+|+++...+.+++||.+ .+..+.+.|.+.+++.||+++++++|+++..+    +  +.+.|++.+ 
T Consensus        77 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~--~~~~v~~~~-  152 (401)
T 2gqf_A           77 RYTNWDFISLVAEQGITYHEKELGQLFCDE-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEK--VRFVLQVNS-  152 (401)
T ss_dssp             HSCHHHHHHHHHHTTCCEEECSTTEEEETT-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSS--CCEEEEETT-
T ss_pred             hCCHHHHHHHHHhCCCceEECcCCEEccCC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCC--CeEEEEECC-
Confidence            889999999999999998877889999977 88899999999999999999999999999876    4  447777664 


Q ss_pred             ccCceEEEEcCeEEEccCCC--------hhHHHHHHHcCCCcccCCCceeEeeeC-cccc-ccccCceeccEEEEEEecC
Q 011610          205 TMNLVECIEADYLLIASGSS--------QQGHRLAAQLGHSIVDPVPSLFTFKIA-DSQL-TELSGVSFPKVVAKLKLEN  274 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~--------g~g~~la~~~G~~i~~~~p~l~~~~~~-~~~~-~~l~G~~~~~~~~~~~~~~  274 (481)
                          + +++||.||+|||+.        |+++.+++++|+++.|+.|.++++.+. ++.+ ..++|.+++ ..+.+.  |
T Consensus       153 ----g-~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~-~~~~i~--G  224 (401)
T 2gqf_A          153 ----T-QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLP-VTITAL--C  224 (401)
T ss_dssp             ----E-EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEE-EEEEET--T
T ss_pred             ----C-EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeee-eEEEEc--C
Confidence                3 79999999999964        478999999999999999999999863 3445 789999885 455442  3


Q ss_pred             ccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCC
Q 011610          275 VQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCP  354 (481)
Q Consensus       275 ~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~  354 (481)
                      +      ....||++|||+|+|||+++++|+++.+       ...+.||++|+++.+++.   ....+.++++++.+.+.
T Consensus       225 ~------~~~~g~~l~t~~g~sG~~~l~~s~~~~~-------~~~~~i~~~p~~~~~~~~---~~~~~~~~~~~~~~~l~  288 (401)
T 2gqf_A          225 G------KSFYNQLLFTHRGISGPAVLQISNYWQP-------TESVEIDLLPNHNVEEEI---NQAKQSSPKQMLKTILV  288 (401)
T ss_dssp             S------CEEEEEEEECSSEEESHHHHHHTTTCCT-------TCCEEEESCSSSCHHHHH---HHHHHHCTTSBHHHHHT
T ss_pred             C------ceEEeCEEEECCCccHHHHHHHHHHHhc-------CCEEEEECCCCCCHHHHH---HHHhhhcccccHHHHhh
Confidence            1      1256999999999999999999997632       257788999999987773   22232567888999988


Q ss_pred             CccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCC
Q 011610          355 PEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPR  434 (481)
Q Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~g  434 (481)
                      .  .||+|+++.+++..+++ +++++++++++++.|++.||+++|+++|+.+|++|+||+|||+++||||+|||||.+||
T Consensus       289 ~--~lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~a~vt~GGv~~~~~~~~tmes~~~~g  365 (401)
T 2gqf_A          289 R--LLPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTMGGVDTKVISSKTMESNQVSG  365 (401)
T ss_dssp             T--TSCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHCEEECCSEECCTTTCSEEEEEECGGGBCTTTCBBSSSTT
T ss_pred             h--hcCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhcCEEEecccCCcceeEEeCCccccccCChhhccccCCCC
Confidence            7  89999999999999997 68899999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhH
Q 011610          435 LFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK  469 (481)
Q Consensus       435 Ly~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~  469 (481)
                      ||||||+|||||+||||||||||+|||+||++|++
T Consensus       366 ly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~~  400 (401)
T 2gqf_A          366 LYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR  400 (401)
T ss_dssp             EEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=100.00  E-value=4.8e-65  Score=531.43  Aligned_cols=408  Identities=31%  Similarity=0.506  Sum_probs=347.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ++++||+|||||++|+++|+.|++  .|.+|+|||+. .+++++..+|+++|++++...  ...+...+.... .+....
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~--~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~--~~~~~~~~~~~~-~~~~~~   98 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLP--LDEIVKHIPGNG-RFLYSA   98 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTGGGTCCCEECSC--HHHHHHTCTBTG-GGGHHH
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHH--CCCCEEEEECCCCCCceeEEeCCCceeccCccc--HHHHHHHhccCh-HHHHHH
Confidence            356899999999999999999999  78999999965 677888889999999988632  224555554433 344455


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                      +..++..+..+|++..|+++.....+++||.+..+..+++.|.+.+++.||+|+++++|+++..++ +..+.|++.+   
T Consensus        99 ~~~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~-~~v~~V~~~~---  174 (447)
T 2i0z_A           99 FSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVILQT---  174 (447)
T ss_dssp             HHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETT---
T ss_pred             HHhcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC-CcEEEEEECC---
Confidence            667888899999999999988877889999888899999999999999999999999999998765 3447888765   


Q ss_pred             CceEEEEcCeEEEccCCC--------hhHHHHHHHcCCCcccCCCceeEeeeCcccccc--ccCceeccEEEEEE-ecCc
Q 011610          207 NLVECIEADYLLIASGSS--------QQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTE--LSGVSFPKVVAKLK-LENV  275 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~--------g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~--l~G~~~~~~~~~~~-~~~~  275 (481)
                        +.+++||.||+|||+.        |+++.+++++|+++.++.|.++++.+.+++.+.  +.|+++.++.+.+. .+| 
T Consensus       175 --G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-  251 (447)
T 2i0z_A          175 --GEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFPTEVPILSNEPFIRDRSLQGLALRDINLSVLNPKG-  251 (447)
T ss_dssp             --CCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEECSCCEECCCHHHHTTTTTTCEEEEEEEEECC----
T ss_pred             --CCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCcccCcceeeeeecCCcccccccccCcccCCeEEEEEecCC-
Confidence              4569999999999964        478999999999999999999999988766666  88988655555552 333 


Q ss_pred             cCCCCccceecCeEEEeccccchhhcccchhhHHHhHccC-ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCC
Q 011610          276 QRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSC-YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCP  354 (481)
Q Consensus       276 ~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~-~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~  354 (481)
                         +++..+.||++|||+++|||+++++|+++.+.+.... ....+.+|++|.++.+++.+.|.+.....+++++.+.+.
T Consensus       252 ---~r~~~~~ge~~~t~~~~~g~~~l~~s~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~  328 (447)
T 2i0z_A          252 ---KAIISHKMDMLFTHFGLSGPAALRCSQFVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLK  328 (447)
T ss_dssp             ----CEEEEEEEEEECSSEEESHHHHHHHHHHHHHHHHHCCSCEEEEEESCTTSCHHHHHHHHHHHHTTSTTSBHHHHTT
T ss_pred             ---ceEecccCCeEEECCcccHHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhChhhhHHHhcc
Confidence               3356677999999999999999999988765542211 125688999999999999998888777778888999887


Q ss_pred             CccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCC
Q 011610          355 PEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPR  434 (481)
Q Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~g  434 (481)
                      .  .+|+++++.+++..+++++++++++++++++.|.+.++++||++.++.+|..|+||+|||+++|+|++|||+|++||
T Consensus       329 ~--~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~T~GGv~~~~i~~~t~~~~~i~G  406 (447)
T 2i0z_A          329 G--YVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVTGGGVSVKEINPKEMSSKFTNG  406 (447)
T ss_dssp             T--SSCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHHEEEEECEECCGGGCSSEEEEECGGGEETTTTEESSSBT
T ss_pred             c--cChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhCCEEEecCCCCccEEEEeCCceeeecccccccccCcCCC
Confidence            6  89999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          435 LFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       435 Ly~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      ||||||++||+|+||||||||||+|||+||++|+++++
T Consensus       407 Ly~aGEv~~v~g~~GG~~l~~a~~~G~~Ag~~aa~~~~  444 (447)
T 2i0z_A          407 LYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENAK  444 (447)
T ss_dssp             EEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEeeccCccCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999988764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.93  E-value=2.7e-25  Score=238.19  Aligned_cols=376  Identities=19%  Similarity=0.194  Sum_probs=207.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCC-------cchhHHhhcc-----C
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHC-------ADKMILAGHY-----P  116 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~-------~~~~~~~~~~-----~  116 (481)
                      .+||+|||||++|++||+.|++  .|++|+|||+. ..+++...++++.+ ..+...       .+...+...+     .
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~--~G~~V~vlEk~~~~gg~s~~a~gg~~-~~~~~~~~~~g~~ds~~~~~~~~~~~g~~  202 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAKLAAGGMN-AAWTDQQKAKKITDSPELMFEDTMKGGQN  202 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGCCSCEE-CSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCchhhcCceEE-eCCCHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            6899999999999999999999  79999999976 45555555555543 222110       0111111111     0


Q ss_pred             CCChhchhhHHhcCChHHHHHHHHhcCCccee--ecCCeeeec-----C--CChHHHHHHHHHHHHhCCCEEEcCceEEE
Q 011610          117 RGHKEFRGSFFSLHGPMDTMSWFSDHGVELKT--EDDGRVFPV-----S--DSSSSVIDCLLTEAKHRGVVLQTGKVVTT  187 (481)
Q Consensus       117 ~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~--~~~g~~~p~-----~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~  187 (481)
                      .....++..+. . ...+.++|+.+.|+++..  ...+..+|.     .  .....+...|.+.+++.||+|+++++|++
T Consensus       203 ~~~~~~~~~~~-~-~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~  280 (571)
T 1y0p_A          203 INDPALVKVLS-S-HSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIE  280 (571)
T ss_dssp             CSCHHHHHHHH-H-HHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEE
T ss_pred             CCCHHHHHHHH-H-ccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeE
Confidence            11223332221 1 234677899999988743  222333322     1  23567889999999999999999999999


Q ss_pred             EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------------------ChhHHHHHHHcCCCcccC
Q 011610          188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQLGHSIVDP  241 (481)
Q Consensus       188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~g~g~~la~~~G~~i~~~  241 (481)
                      |..++++..++|.+.+ .++...++.||.||+|||+                          +|+++.++.++|+.+..+
T Consensus       281 l~~~~~g~v~Gv~~~~-~~g~~~~i~a~~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~tGdg~~~a~~~Ga~~~~~  359 (571)
T 1y0p_A          281 VLKDDKGTVKGILVKG-MYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDM  359 (571)
T ss_dssp             EEECTTSCEEEEEEEE-TTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTCCEECT
T ss_pred             eEEcCCCeEEEEEEEe-CCCcEEEEECCeEEEeCCCcccCHHHHHHhCccccCCcccCCCCCchHHHHHHHHcCCcEeCC
Confidence            9875312445566552 1222347999999999996                          246788999999998764


Q ss_pred             CCce-eEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEE
Q 011610          242 VPSL-FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGML  320 (481)
Q Consensus       242 ~p~l-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~  320 (481)
                      .... .|............+++... .+.+..+|    +++   ..|+  ..+...+.+++.          ..+....+
T Consensus       360 ~~~~~~p~~~~~~~~~~~~~~~~~g-~i~vn~~G----~RF---~~E~--~~~~~~~~a~~~----------~~~~~~~~  419 (571)
T 1y0p_A          360 QYIQAHPTLSVKGGVMVTEAVRGNG-AILVNREG----KRF---VNEI--TTRDKASAAILA----------QTGKSAYL  419 (571)
T ss_dssp             TCEEEEEEEETTTCSBCCTHHHHTT-CEEECTTS----CCC---SCTT--SCHHHHHHHHHT----------SGGGCEEE
T ss_pred             cceeecCcccCCCCceeeecccCCc-eEEECCCC----CCC---cCCC--CcHhHHHHHHHh----------CcCCCEEE
Confidence            4321 12111111000001111111 12222122    222   1222  111111111111          11122344


Q ss_pred             EEecCCCCCHHHHHH--HHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH-----
Q 011610          321 TVDFVPDLHIEDMQS--ILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL-----  393 (481)
Q Consensus       321 ~~d~~p~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-----  393 (481)
                      .+|-      ..++.  .+......       ..     ......+++|+++.|++++...+.+  +.++.++..     
T Consensus       420 i~d~------~~~~~~~~~~~~~~~-------g~-----~~~~~tl~ela~~~gi~~~~l~~tv--~~yn~~~~~g~D~~  479 (571)
T 1y0p_A          420 IFDD------SVRKSLSKIDKYIGL-------GV-----APTADSLVKLGKMEGIDGKALTETV--ARYNSLVSSGKDTD  479 (571)
T ss_dssp             EEEH------HHHHHCTTHHHHHHH-------TC-----CCEESSHHHHHHHHTSCHHHHHHHH--HHHHHHHHHTCCTT
T ss_pred             EECh------HHHhhhhhHHHHhhC-------Ce-----EEEeCCHHHHHHHhCcCHHHHHHHH--HHHHHHHHcCCCcc
Confidence            3432      11100  00000000       00     1112234556666677665443333  444554432     


Q ss_pred             ---------hccCeEEEcccCCCceeEEecCCCCCCCCCc-ccccccCCCCeEEEEEEee-ccc--CcchHHHHHHHHHH
Q 011610          394 ---------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKIHPRLFFAGEVLN-VDG--VTGGFNFQNAWSGG  460 (481)
Q Consensus       394 ---------l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~~~gLy~~GE~ld-v~g--~~GGynl~~A~~sG  460 (481)
                               +.+-||+.....  ..+..|.|||.+++--. .+-+.++|||||+|||+.- ++|  +.||.+|.+|+++|
T Consensus       480 f~k~~~~~~i~~~Pfya~~~~--p~~~~t~GGl~id~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fG  557 (571)
T 1y0p_A          480 FERPNLPRALNEGNYYAIEVT--PGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFG  557 (571)
T ss_dssp             TCCSCCCCCSCSSCEEEEEEE--EEEEEECCEEEBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHH
T ss_pred             cCCCCCCCcCCCCCEEEEEEe--eeeeEecCCeEECCCceEECCCCCCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHH
Confidence                     223454443322  23677999999886321 1224579999999999864 665  67999999999999


Q ss_pred             HHHHHHHhHHhhH
Q 011610          461 YIAGTSIGKLSND  473 (481)
Q Consensus       461 ~~AG~~aa~~~~~  473 (481)
                      |+||++||+++++
T Consensus       558 r~Ag~~aa~~~~~  570 (571)
T 1y0p_A          558 RLAGEEAAKYSKK  570 (571)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987753

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.93  E-value=2.2e-25  Score=238.69  Aligned_cols=377  Identities=18%  Similarity=0.183  Sum_probs=208.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCC------C-cchhHHhhcc-----
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGH------C-ADKMILAGHY-----  115 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~------~-~~~~~~~~~~-----  115 (481)
                      .++||+|||||++|++||+.|++  .|++|+|||+. .++++...++++.+ ..+..      . .+...+...+     
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~--~G~~V~vlEk~~~~gg~s~~s~gg~~-~~~~~~~~~~g~~ds~~~~~~~~~~~~~  196 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGNSMISAGGMN-AVGTKQQTAHGVEDKVEWFIEDAMKGGR  196 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTTGGGCCSCEE-CSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccCceeE-ccCCHHHHHhCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999999  68999999976 45555555555543 22211      0 0111111110     


Q ss_pred             CCCChhchhhHHhcCChHHHHHHHHhcCCcceee--cCCeeeecC-------CChHHHHHHHHHHHHhCCCEEEcCceEE
Q 011610          116 PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE--DDGRVFPVS-------DSSSSVIDCLLTEAKHRGVVLQTGKVVT  186 (481)
Q Consensus       116 ~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~~~p~~-------~~a~~~~~~l~~~~~~~Gv~i~~~~~V~  186 (481)
                      ......++..+..  ...+.++|+.+.|+++...  ..+..+|..       .....+++.|.+.+++.||+|+++++|+
T Consensus       197 ~~~~~~~~~~~~~--~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~  274 (566)
T 1qo8_A          197 QQNDIKLVTILAE--QSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVV  274 (566)
T ss_dssp             TCSCHHHHHHHHH--HHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEE
T ss_pred             CCCCHHHHHHHHh--ccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence            1112233322222  2356788999999887531  123333321       1267788999999999999999999999


Q ss_pred             EEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------------------ChhHHHHHHHcCCCccc
Q 011610          187 TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQLGHSIVD  240 (481)
Q Consensus       187 ~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~g~g~~la~~~G~~i~~  240 (481)
                      +|..++++..++|++.+ .++....+.||.||+|||+                          +|+++.++.++|+.+..
T Consensus       275 ~l~~~~~g~v~Gv~~~~-~~g~~~~i~A~~VVlAtGg~s~~~~~~~~~~p~~~~~~~~~~~~~tGdg~~~a~~~Ga~~~~  353 (566)
T 1qo8_A          275 KLVVNDDHSVVGAVVHG-KHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTD  353 (566)
T ss_dssp             EEEECTTSBEEEEEEEE-TTTEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCEECSCTTCSCHHHHHHHHTTBCEES
T ss_pred             EEEECCCCcEEEEEEEe-CCCcEEEEEcCEEEEecCCcccCHHHHHHhCccccCCcccCCCCCCcHHHHHHHHcCCeEec
Confidence            99875312344566652 1222237999999999995                          24678888889988876


Q ss_pred             CCCceeEeeeCccccccccCcee--ccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCcee
Q 011610          241 PVPSLFTFKIADSQLTELSGVSF--PKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKG  318 (481)
Q Consensus       241 ~~p~l~~~~~~~~~~~~l~G~~~--~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~  318 (481)
                      +......-...... ..+....+  .. .+.+..+|    +++..   |.  ..+...+.+++.          ..+...
T Consensus       354 ~~~~~~~p~~~~~~-~~~~~~~~~~~g-~i~vn~~G----~Rf~~---E~--~~~~~~~~~~~~----------~~~~~~  412 (566)
T 1qo8_A          354 IDWVQAHPTVGKDS-RILISETVRGVG-AVMVNKDG----NRFIS---EL--TTRDKASDAILK----------QPGQFA  412 (566)
T ss_dssp             TTCEEEEEEEESSS-CSBCCTHHHHTT-CEEECTTS----CCCSC---TT--SCHHHHHHHHHT----------SGGGCE
T ss_pred             CcceeecccccCCc-cccchhhhccCC-eEEECCCC----CCccC---CC--CCHHHHHHHHHh----------CCCCcE
Confidence            55432221111100 00111000  11 11122122    22222   21  111111122221          111123


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH-----
Q 011610          319 MLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL-----  393 (481)
Q Consensus       319 ~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-----  393 (481)
                      .+.+|-      ...+ ... ....    .+..-.    ......+++|++..|++++.....+  ++++.++..     
T Consensus       413 ~~i~d~------~~~~-~~~-~~~~----~~~~~~----~~~~~tl~eLa~~~gi~~~~l~~tv--~~yn~~~~~g~d~~  474 (566)
T 1qo8_A          413 WIIFDN------QLYK-KAK-MVRG----YDHLEM----LYKGDTVEQLAKSTGMKVADLAKTV--SDYNGYVASGKDTA  474 (566)
T ss_dssp             EEEEEH------HHHH-HCH-HHHH----HHHTTC----CEEESSHHHHHHHTTCCHHHHHHHH--HHHHHHHHHSCCTT
T ss_pred             EEEECh------HHhh-hhh-hhHH----HhhcCc----EEEeCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCCCcc
Confidence            333331      1111 000 0000    000000    1112335666667777665433333  344555442     


Q ss_pred             ---------hccCeEEEcccCCCceeEEecCCCCCCCCCc-ccccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHH
Q 011610          394 ---------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGG  460 (481)
Q Consensus       394 ---------l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG  460 (481)
                               +.+-||+.....  ..+..|.|||.+++--. .+-+.++|||||+|||+. .++|  +.||.+|.+|+++|
T Consensus       475 fg~~~~~~~i~~~Pfya~~~~--p~~~~t~GGl~vd~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~G  552 (566)
T 1qo8_A          475 FGRADMPLNMTQSPYYAVKVA--PGIHHTMGGVAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFG  552 (566)
T ss_dssp             TCCSCCCCCSCSSSEEEEEEE--EEEEEECCEECBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHH
T ss_pred             cCCCCCCCcCCCCCEEEEEEe--cccceecccEEECCCCeEECCCCCEeCCEEecccccCCCCCCCCCchhhHHHHHHHH
Confidence                     223354443222  23677999999986321 122357999999999986 4665  67999999999999


Q ss_pred             HHHHHHHhHHhh
Q 011610          461 YIAGTSIGKLSN  472 (481)
Q Consensus       461 ~~AG~~aa~~~~  472 (481)
                      |+||++||++++
T Consensus       553 r~Ag~~aa~~~~  564 (566)
T 1qo8_A          553 RIAGDNAAKHAL  564 (566)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998775

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.92  E-value=3.2e-24  Score=226.85  Aligned_cols=375  Identities=19%  Similarity=0.195  Sum_probs=201.5

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCcee-----ec-cCCC-cchhHHhhcc---
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCN-----VT-NGHC-ADKMILAGHY---  115 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n-----~~-~~~~-~~~~~~~~~~---  115 (481)
                      ++.++||||||+|++|++||+.|++  .|++|+||||. ..++....++++-+.     +. .... .+...+...+   
T Consensus        38 ~~~~~DVvVVGaG~AGl~AA~~aa~--~G~~V~vlEk~~~~GG~s~~s~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~  115 (510)
T 4at0_A           38 WDYEADVVVAGYGIAGVAASIEAAR--AGADVLVLERTSGWGGATALAGGFIYLGGGTPLQKACGFDDSPENMKTFMMAA  115 (510)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGSCCCEECCSSCHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcchhcCcceecCCCCHHHHHhCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999999  79999999976 445433333322110     00 0000 0111111110   


Q ss_pred             --CCCChhchhhHHhcCChHHHHHHHHhcCCcceee-----------cCCeeeec-------------------------
Q 011610          116 --PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE-----------DDGRVFPV-------------------------  157 (481)
Q Consensus       116 --~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~-----------~~g~~~p~-------------------------  157 (481)
                        .......+..+. . ...+.++|+.+.|+++...           ..+..+..                         
T Consensus       116 ~~~~~~~~~~~~~~-~-~~~~~i~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~r~~~~~~~~~  193 (510)
T 4at0_A          116 LGPGADEEKITDYC-E-GSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGHVPQMDGK  193 (510)
T ss_dssp             SCSSCCHHHHHHHH-H-THHHHHHHHHHTTCCCCSCEECSSSSSCSSSCSEECCSSTTSTTGGGTSCCCCCEECCCCSSC
T ss_pred             hCCCCCHHHHHHHH-H-hhHHHHHHHHHcCCeecccccCCcccccCCcccccccCcccccccccccCcccceeeeccccc
Confidence              111222222221 1 2356778999988876432           11111110                         


Q ss_pred             ---CCCh-HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcC-eEEEccCC---------
Q 011610          158 ---SDSS-SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEAD-YLLIASGS---------  223 (481)
Q Consensus       158 ---~~~a-~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad-~VIlAtG~---------  223 (481)
                         .... ..+...|.+.+++.|++|+++++|++|..++++..++|.+.+  .++..++.|+ .||+|||+         
T Consensus       194 ~~g~~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~--~g~~~~i~A~k~VVlAtGG~~~n~~m~~  271 (510)
T 4at0_A          194 RTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ--YGKEVAVRARRGVVLATGSFAYNDKMIE  271 (510)
T ss_dssp             BTTTBCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE--TTEEEEEEEEEEEEECCCCCTTCHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE--CCcEEEEEeCCeEEEeCCChhhCHHHHH
Confidence               0012 278999999999999999999999999987314556677653  2223479995 99999995         


Q ss_pred             -----------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceec
Q 011610          224 -----------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVG  286 (481)
Q Consensus       224 -----------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~G  286 (481)
                                       +|++..++.++|..+..+....... ...+.  .+.+      .+-+..+|    +++..+. 
T Consensus       272 ~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~~m~~~~~~p-~~~~~--~~~~------~i~vn~~G----~RF~nE~-  337 (510)
T 4at0_A          272 AHAPRLIGRPGAAIEEHDGRSILMAQALGADLAHMDATEVAF-VCDPQ--LIVR------GILVNGRG----QRYVPED-  337 (510)
T ss_dssp             HHCGGGTTCBCCSCTTCCCHHHHHHHTTTBCEECTTCEEEEE-CSCHH--HHTT------SEEECTTS----CBCSCTT-
T ss_pred             HhCccccCCCCCCCCCCCHHHHHHHHHhCcCeecchhhhccC-ccChh--hccc------cEEECCCC----CCCCCCC-
Confidence                             3467788888888876654432100 00110  1111      11122222    2333321 


Q ss_pred             CeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHH
Q 011610          287 PMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKY  366 (481)
Q Consensus       287 e~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  366 (481)
                        . . +..-+.+++.          +.+....+.+|-      ..++. ..   ..............  .+ ...+++
T Consensus       338 --~-~-~~~~~~~~~~----------~~~~~~~~i~D~------~~~~~-~~---~~~~~~~~~~~~~~--~~-adtlee  390 (510)
T 4at0_A          338 --T-Y-SGRIGQMTLF----------HQDNQAFLIIDE------ASYEE-GA---AATTATPFLRVQPK--WA-AETVEE  390 (510)
T ss_dssp             --S-C-HHHHHHCCCC----------CSTTCCEEEEEH------HHHHH-HH---HSCCSCGGGCCCCS--EE-ESSHHH
T ss_pred             --c-c-HHHHHHHHHh----------CCCCeEEEEECH------HHHHh-hh---cccccccchhhhhc--cc-CCCHHH
Confidence              0 0 0000111110          111222333331      11111 00   00000000001111  11 234566


Q ss_pred             HHHhcCCCCCCccccCCHHHHHHHHHHhcc--------------CeEEEcccCCCceeEEecCCCCCCCCCc-ccccccC
Q 011610          367 ILGREGLSGDTLWASVSNNSLISIARLLKH--------------CTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKI  431 (481)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~--------------~~~~v~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~  431 (481)
                      |+++.|++++...+.+  +.++.++..-++              -||+..... ......|.||+.+++--. .+-+.++
T Consensus       391 LA~~~g~~~~~l~~tv--~~yN~~~~~g~D~~fgk~~~~l~pi~~Pfya~~~~-~~~~~~t~GGl~~d~~~~Vl~~~g~~  467 (510)
T 4at0_A          391 LESDMGLPAGALQSTV--EVYNKHAAEGSDPLLHKKSEWVKPIGTPVAALDLR-GFTLGFTLGGLRTTVNSEVLHVSGEP  467 (510)
T ss_dssp             HHHHTTCCTTHHHHHH--HHHHHHHTTTCCTTTCCCGGGCCCCCSSEEEEECT-TCEEEEECCEECBCTTCEEEBTTSSE
T ss_pred             HHHHhCcCHHHHHHHH--HHHHHHHhcCCCcccCCCcccccCCCCCEEEEEee-cCcccccCcCeeECCCCceECCCCCC
Confidence            7777777766544433  344444432111              355554431 123568999999986321 2234689


Q ss_pred             CCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          432 HPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       432 ~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      |||||+|||+. .++|  +.||.+|..|+++||+||++||+.|
T Consensus       468 I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~~~  510 (510)
T 4at0_A          468 IPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAKQA  510 (510)
T ss_dssp             EEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHCC-
T ss_pred             cCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHhcC
Confidence            99999999976 5654  6799999999999999999998653

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.92  E-value=1.1e-23  Score=225.97  Aligned_cols=352  Identities=17%  Similarity=0.137  Sum_probs=204.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC--CceEEecCCceeeccCCCcchhHHhh------ccCCCCh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL--SKVKISGGGRCNVTNGHCADKMILAG------HYPRGHK  120 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g--~k~~~sG~g~~n~~~~~~~~~~~~~~------~~~~~~~  120 (481)
                      .++||+|||||++|++||+.|++  .|.+|+||||....  .+..++|+..++..+....+...+..      .+. ...
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~--~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~-~d~   82 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI-GDQ   82 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTC-SCH
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCC-CCH
Confidence            36899999999999999999999  78999999987543  34445565556554421111111111      111 122


Q ss_pred             hchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecC---------------------CChHHHHHHHHHHHHhCCCEE
Q 011610          121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVS---------------------DSSSSVIDCLLTEAKHRGVVL  179 (481)
Q Consensus       121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~---------------------~~a~~~~~~l~~~~~~~Gv~i  179 (481)
                      ..+..+. . ...+.++|+.++|+++.....+.+++..                     .....++..|.+.+++.|++|
T Consensus        83 ~~v~~~~-~-~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i  160 (588)
T 2wdq_A           83 DAIEYMC-K-TGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI  160 (588)
T ss_dssp             HHHHHHH-H-HHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHH-H-hHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEE
Confidence            2222221 1 1246778899999988654444443211                     113678899999999999999


Q ss_pred             EcCceEEEEEec-CCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCc
Q 011610          180 QTGKVVTTASSD-NAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPS  244 (481)
Q Consensus       180 ~~~~~V~~i~~~-~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~  244 (481)
                      +++++|++|..+ + +..++|.+.+..++....+.|+.||+|||+              +|+|+.++.++|+.+..+...
T Consensus       161 ~~~~~v~~L~~~~~-g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~y~~~~~~~~~tGdG~~ma~~aGa~l~~me~~  239 (588)
T 2wdq_A          161 FSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMW  239 (588)
T ss_dssp             EETEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGSSSBSSCTTCCCHHHHHHHHTTCCEECTTCE
T ss_pred             EeCcEEEEEEECCC-CEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccccCCcCCCCCchHHHHHHHHHcCCCEeChhHh
Confidence            999999999985 4 345567654312222347999999999995              468899999999998776533


Q ss_pred             ee-EeeeCccccccc--cCceeccEEEEEEecCccCCCCccceecCeEEEecc----ccchhhcccchhhHHHhHccCc-
Q 011610          245 LF-TFKIADSQLTEL--SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCY-  316 (481)
Q Consensus       245 l~-~~~~~~~~~~~l--~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g----lsG~~il~lS~~~~~~~~~~~~-  316 (481)
                      .+ |.......  .+  .+++-.. .+-+  +          ..|+.+..+|.    -..|. --+++.+..++.+... 
T Consensus       240 q~hpt~~~~~~--~l~~e~~rg~g-~ilv--n----------~~G~RF~~~~~~~~~el~~r-d~v~~ai~~~~~~~~~~  303 (588)
T 2wdq_A          240 QFHPTGIAGAG--VLVTEGCRGEG-GYLL--N----------KHGERFMERYAPNAKDLAGR-DVVARSIMIEIREGRGC  303 (588)
T ss_dssp             EEEEEEETTTC--CBCCTHHHHTT-CEEE--C----------TTCCCTHHHHCTTTGGGSCH-HHHHHHHHHHHHTTCSB
T ss_pred             heecceecCCc--ceeeehhccCC-cEEE--C----------CCCCCCccccCcccchhccH-HHHHHHHHHHHHhCCCc
Confidence            22 11111110  00  0000001 1112  1          12333222121    00010 0012222233222211 


Q ss_pred             ----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhc-CCCCCCccccCCHHHHHHHH
Q 011610          317 ----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGRE-GLSGDTLWASVSNNSLISIA  391 (481)
Q Consensus       317 ----~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~  391 (481)
                          ...+.+|+- .+..+.    +.            .      .+|  .+..+++.. |+|+.+              
T Consensus       304 ~~~~~~~v~ld~~-~~~~~~----~~------------~------~~~--~i~e~~~~~~GiD~~~--------------  344 (588)
T 2wdq_A          304 DGPWGPHAKLKLD-HLGKEV----LE------------S------RLP--GILELSRTFAHVDPVK--------------  344 (588)
T ss_dssp             CSTTCSBEEEECG-GGHHHH----HH------------H------HCH--HHHHHHHHHTCCCTTT--------------
T ss_pred             cCCCCCeEEEecc-cCCHHH----HH------------H------Hhh--HHHHHHHHhCCCCCCC--------------
Confidence                112344431 111111    11            1      111  134555654 888753              


Q ss_pred             HHhccCeEEEcccCCCceeEEecCCCCCCCCCccccc------ccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHH
Q 011610          392 RLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGY  461 (481)
Q Consensus       392 ~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~  461 (481)
                           .|++|..     .+..|+|||.+++- .+++.      .+.|||||+|||+.  .++|  +.||.+|..|+++|+
T Consensus       345 -----~~i~v~p-----~~h~t~GGi~vd~~-~~vl~~~~~~~g~~I~GLyAaGe~a~~g~hG~nrl~gnsl~~~~vfG~  413 (588)
T 2wdq_A          345 -----EPIPVIP-----TCHYMMGGIPTKVT-GQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGR  413 (588)
T ss_dssp             -----SCEEEEE-----EEEEECCBEEBCTT-CEEEEECTTSCEEEEEEEEECGGGEECSSSTTSCCTTHHHHHHHHHHH
T ss_pred             -----CcEEEec-----cccccCceEEECCC-CCCcccccccCCCeeCCceeCccccccCCCCCCCCcchhHHHHHHHHH
Confidence                 2344543     36789999999864 34543      35899999999975  5777  568999999999999


Q ss_pred             HHHHHHhHHhh
Q 011610          462 IAGTSIGKLSN  472 (481)
Q Consensus       462 ~AG~~aa~~~~  472 (481)
                      +||++||+++.
T Consensus       414 ~Ag~~aa~~~~  424 (588)
T 2wdq_A          414 AAGLHLQESIA  424 (588)
T ss_dssp             HHHHTHHHHHH
T ss_pred             HHHHHHHHhhh
Confidence            99999988764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.92  E-value=1.7e-23  Score=225.06  Aligned_cols=353  Identities=16%  Similarity=0.154  Sum_probs=201.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-c-eEEecCCceeeccCCCcchhHHhh------ccCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-K-VKISGGGRCNVTNGHCADKMILAG------HYPRGH  119 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k-~~~sG~g~~n~~~~~~~~~~~~~~------~~~~~~  119 (481)
                      +.++||||||||++|++||+.|++  .|.+|+||||..+.+ . ..+.|+..+.+.+....+...+..      .+. .+
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~--~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l-~d   92 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSE--AGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWL-GD   92 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTC-SC
T ss_pred             cccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCC-CC
Confidence            356899999999999999999999  799999999875432 2 233444344333321111111111      111 12


Q ss_pred             hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeee----------------------cCCChHHHHHHHHHHHHhCCC
Q 011610          120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP----------------------VSDSSSSVIDCLLTEAKHRGV  177 (481)
Q Consensus       120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~~~~~~l~~~~~~~Gv  177 (481)
                      ..++..+ ... ..+.++|+.++|+++.....+.+++                      .......++..|.+.+.+.||
T Consensus        93 ~~~v~~l-~~~-s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv  170 (621)
T 2h88_A           93 QDAIHYM-TEQ-APAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT  170 (621)
T ss_dssp             HHHHHHH-HHH-HHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHH-HHH-HHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            2332222 111 3467789999999876544443321                      011245788999999999999


Q ss_pred             EEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610          178 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP  243 (481)
Q Consensus       178 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p  243 (481)
                      +|++++.|++|..++ +...+|.+.+..++....+.|+.||+|||+              +|+|+.++.++|+.+..+..
T Consensus       171 ~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~y~~~t~~~~~tGdG~~mA~raGa~l~~me~  249 (621)
T 2h88_A          171 SYFVEYFALDLLMEN-GECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEF  249 (621)
T ss_dssp             EEEETEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGSSSBSSCTTCCCHHHHHHHHTTCCEECTTC
T ss_pred             EEEEceEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccccccCCcCCCCCCChHHHHHHHHcCCCcccCcc
Confidence            999999999998765 445566664312222347999999999995              46789999999999876543


Q ss_pred             cee-EeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcc------cchhhHHHhHccCc
Q 011610          244 SLF-TFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILR------LSAWGARYLFSSCY  316 (481)
Q Consensus       244 ~l~-~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~------lS~~~~~~~~~~~~  316 (481)
                      ..+ |.......+---.+++-.. .+-+  +          ..|+.+..+|.   |...+      +|+.+..++.+...
T Consensus       250 ~q~hPt~~~~~~~l~se~~rg~g-~ilv--n----------~~G~RF~~~y~---p~~~ela~rdvv~rai~~e~~~g~g  313 (621)
T 2h88_A          250 VQFHPTGIYGAGCLITEGCRGEG-GILI--N----------SQGERFMERYA---PVAKDLASRDVVSRSMTIEIREGRG  313 (621)
T ss_dssp             EEEEEEEETTTCCBCCTHHHHTT-CEEE--C----------TTCCCTHHHHS---TTTGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             eeeecccccCCcceecccccCCc-cEEE--C----------CCCCCcccccC---cccccccchHHHHHHHHHHHHhcCC
Confidence            222 1111110000000011011 1111  1          12333222221   11111      22222233332211


Q ss_pred             ----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHH
Q 011610          317 ----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIA  391 (481)
Q Consensus       317 ----~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~  391 (481)
                          ...+.+|+ ..+..+.+.+.+                      | . +..+++. .|+|+.               
T Consensus       314 ~~~~~~~v~ld~-~~l~~~~l~~~~----------------------~-~-i~~~~~~~~G~D~~---------------  353 (621)
T 2h88_A          314 CGPEKDHVYLQL-HHLPPQQLATRL----------------------P-G-ISETAMIFAGVDVT---------------  353 (621)
T ss_dssp             BTTTTCBEEEEC-TTSCHHHHHHHC----------------------H-H-HHHHHHHHHCCCTT---------------
T ss_pred             cccCCCeEEEEc-ccCCHHHHHHHH----------------------H-H-HHHHHHHhcCCCCC---------------
Confidence                11244453 233444332211                      1 0 1122222 377763               


Q ss_pred             HHhccCeEEEcccCCCceeEEecCCCCCCCCCcccc-----cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHH
Q 011610          392 RLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM-----ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYI  462 (481)
Q Consensus       392 ~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~-----esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~  462 (481)
                          +-|++|...     +..|+|||.+++-- +.+     +.+.|||||+|||+.  .++|  +.||.+|..|+++|++
T Consensus       354 ----~~pi~v~p~-----~h~tmGGi~~d~~~-~Vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~  423 (621)
T 2h88_A          354 ----KEPIPVLPT-----VHYNMGGIPTNYKG-QVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRA  423 (621)
T ss_dssp             ----TSCEEEEEE-----EEEESCBEEBCTTS-EEEEEETTEEEEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHH
T ss_pred             ----CCCEEEEee-----cccccCcEeECCCC-eEeecccCCCcccCceEEccccccccccCCCCCchHhHHHHHHHHHH
Confidence                223555433     67899999987532 221     247899999999975  6887  5799999999999999


Q ss_pred             HHHHHhHHhh
Q 011610          463 AGTSIGKLSN  472 (481)
Q Consensus       463 AG~~aa~~~~  472 (481)
                      ||++||+++.
T Consensus       424 Ag~~aa~~~~  433 (621)
T 2h88_A          424 CALTIAETCK  433 (621)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhhh
Confidence            9999998764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.92  E-value=9.5e-24  Score=228.49  Aligned_cols=348  Identities=17%  Similarity=0.137  Sum_probs=200.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC--CceEEecCCceeeccCCC--cc-hhHHhh------ccCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL--SKVKISGGGRCNVTNGHC--AD-KMILAG------HYPR  117 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g--~k~~~sG~g~~n~~~~~~--~~-~~~~~~------~~~~  117 (481)
                      .++||+|||||++|++||+.|++  .|.+|+||||..+.  .+..++|+..+...+...  .+ ...+..      .+. 
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae--~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~g~~ds~~~~~~dt~~~g~~~-   80 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWG-   80 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTC-
T ss_pred             ccccEEEECchHHHHHHHHHHHH--CCCcEEEEeccCCCCCcccccCCCeEeccCCcccCCCCCHHHHHHHHHHhcCCC-
Confidence            46899999999999999999999  78999999987553  344555655555444210  11 111111      111 


Q ss_pred             CChhchhhHHhcCChHHHHHHHHhcCCcceeecCCe---------------------ee---------ec-----CCChH
Q 011610          118 GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGR---------------------VF---------PV-----SDSSS  162 (481)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~---------------------~~---------p~-----~~~a~  162 (481)
                      .....+..+. .. ..+.++|+.++|+++.....+.                     ++         |.     .....
T Consensus        81 ~d~~~v~~~~-~~-s~~~i~~L~~~Gv~f~~~~~G~~~~~~~g~~~~~l~~~e~~~~~~~~~~gg~~~~R~~~~~d~tG~  158 (660)
T 2bs2_A           81 CDQKVARMFV-NT-APKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGH  158 (660)
T ss_dssp             SCHHHHHHHH-HH-HHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHH
T ss_pred             CCHHHHHHHH-HH-HHHHHHHHHHcCCCceecCCCcccccccccccccccchhhhhhhccccccccccceeEeeCCCCHH
Confidence            1222222222 21 3467788999998876432222                     11         11     11245


Q ss_pred             HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHH
Q 011610          163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGH  228 (481)
Q Consensus       163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~  228 (481)
                      .++..|.+.+.+.|++|++++.|++|..++ +...+|.+.+..++....+.|+.||+|||+              +|+|+
T Consensus       159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~y~~tt~~~~~tGdG~  237 (660)
T 2bs2_A          159 TMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT  237 (660)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHH
T ss_pred             HHHHHHHHHHHhCCCEEEECcEEEEEEecC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcchhhcCCCCCCCCcccHHH
Confidence            788999999999999999999999998765 344566654212222346999999999996              36789


Q ss_pred             HHHHHcCC-CcccCCCceeEeeeCcccc-cccc--CceeccEEEEEEecCccCCCCccceecCeEEEecccc----chhh
Q 011610          229 RLAAQLGH-SIVDPVPSLFTFKIADSQL-TELS--GVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLS----GPVI  300 (481)
Q Consensus       229 ~la~~~G~-~i~~~~p~l~~~~~~~~~~-~~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~gls----G~~i  300 (481)
                      .++.++|+ .+..+.  .+++....... ..+-  +++-.. .+-+  +          ..|+.+..+|.-.    .|. 
T Consensus       238 ~mA~~aGa~~l~~me--~~q~hPt~~~~~~~l~se~~rg~g-~ilv--n----------~~G~RF~~~y~p~~~ela~r-  301 (660)
T 2bs2_A          238 AIALETGIAQLGNME--AVQFHPTPLFPSGILLTEGCRGDG-GILR--D----------VDGHRFMPDYEPEKKELASR-  301 (660)
T ss_dssp             HHHHTTSSSCEECTT--CEEEESCBBTTTCCBCCTHHHHHT-CEEE--C----------TTCCBCHHHHCTTTGGGSCH-
T ss_pred             HHHHHcCCChhcCch--hheecccccCCCcceecccccCCC-cEEE--C----------CCCCCcCcccCcccccccch-
Confidence            99999999 887644  23332111000 0000  000000 0111  1          1233322222100    010 


Q ss_pred             cccchhhHHHhHccCc-----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCC
Q 011610          301 LRLSAWGARYLFSSCY-----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLS  374 (481)
Q Consensus       301 l~lS~~~~~~~~~~~~-----~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~  374 (481)
                      --+|+.+..++.+...     ...+.+|+- .+..+.+.    .                  .+|  .+..+++. .|+|
T Consensus       302 dvv~rai~~~~~~g~g~~~~~~~~v~ld~~-~~~~~~~~----~------------------~~p--~i~e~~~~~~GiD  356 (660)
T 2bs2_A          302 DVVSRRMIEHIRKGKGVQSPYGQHLWLDIS-ILGRKHIE----T------------------NLR--DVQEICEYFAGID  356 (660)
T ss_dssp             HHHHHHHHHHHHTTTSBCCTTCCBEEEECG-GGCHHHHH----H------------------HSH--HHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHhcCCccCCCCCEEEEECC-CCCHHHHH----H------------------HhH--HHHHHHHHhcCCC
Confidence            0012222222222110     123444442 11222111    0                  111  13445555 6888


Q ss_pred             CCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--Ccch
Q 011610          375 GDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGG  450 (481)
Q Consensus       375 ~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GG  450 (481)
                      +.+                   .|++|..     .+..|+|||.+++-    .+. .|||||+|||+.  .++|  +.||
T Consensus       357 ~~~-------------------~~ipv~p-----~~hyt~GGi~vd~~----~~v-~IpGLYAaGE~a~~g~hGanrlgg  407 (660)
T 2bs2_A          357 PAE-------------------KWAPVLP-----MQHYSMGGIRTDYR----GEA-KLKGLFSAGEAACWDMHGFNRLGG  407 (660)
T ss_dssp             TTT-------------------SCEEECC-----EEEEECCEEECCTT----SBC-SSBTEEECGGGEECCSSTTCCCTT
T ss_pred             Ccc-------------------cceEeee-----eeeeccceEEECCC----Cce-ecCCEEeccccccccccCCCCCch
Confidence            753                   3455543     37789999998743    233 899999999975  5777  5799


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhh
Q 011610          451 FNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       451 ynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      .+|..|+++|++||++|++++.
T Consensus       408 nsL~~~~vfGr~Ag~~aa~~~~  429 (660)
T 2bs2_A          408 NSVSEAVVAGMIVGEYFAEHCA  429 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998874

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.92  E-value=3.4e-24  Score=229.51  Aligned_cols=376  Identities=20%  Similarity=0.231  Sum_probs=203.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCC-------cchhHHhhc-----c
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHC-------ADKMILAGH-----Y  115 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~-------~~~~~~~~~-----~  115 (481)
                      ..+||+|||+|++|+++|+.|++  .|.+|+|+|+. .++.....++++.+ ..+...       .+...+...     .
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~--~g~~v~~~e~~~~~~~~~~~a~gg~~-~~~~~~~~~~g~~ds~~~~~~~~~~~g~  201 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTKLAAGGMN-AAETKPQAKLGIEDKKQIMIDDTMKGGR  201 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHS--SSCCEEEECSSSSSCTTGGGCCSCEE-CCSSSTTGGGTCCCCTHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcchhhhCCeeE-ccCCHHHHHhCCCCCHHHHHHHHHHhcC
Confidence            36799999999999999999999  78999999965 55655555555543 222111       011111111     0


Q ss_pred             CCCChhchhhHHhcCChHHHHHHHHhcCCcceee--cCCeeeecC-------CChHHHHHHHHHHHHhCCCEEEcCceEE
Q 011610          116 PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE--DDGRVFPVS-------DSSSSVIDCLLTEAKHRGVVLQTGKVVT  186 (481)
Q Consensus       116 ~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~~~p~~-------~~a~~~~~~l~~~~~~~Gv~i~~~~~V~  186 (481)
                      ......++..+. . ...+.++|+.+.|+++...  ..+..+|..       .....+...|.+.+++.||+|+++++|+
T Consensus       202 ~~~~~~~v~~~~-~-~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~  279 (572)
T 1d4d_A          202 NINDPELVKVLA-N-NSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVV  279 (572)
T ss_dssp             TCSCHHHHHHHH-H-THHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEE
T ss_pred             CCCCHHHHHHHH-H-ccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEE
Confidence            112223332221 1 3456788999989877532  133333321       1256788999999999999999999999


Q ss_pred             EEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------------------ChhHHHHHHHcCCCccc
Q 011610          187 TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQLGHSIVD  240 (481)
Q Consensus       187 ~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~g~g~~la~~~G~~i~~  240 (481)
                      +|..++++..++|.+.+ .++....+.||.||+|||+                          +|+++.++.++|+.+..
T Consensus       280 ~l~~~~~g~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~p~~~~~~~~~~~~~tGdgi~~a~~~Ga~~~~  358 (572)
T 1d4d_A          280 RILEDASGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRD  358 (572)
T ss_dssp             EEEEC--CCEEEEEEEE-TTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBSSCTTCSSHHHHHHHHTTBCEEC
T ss_pred             EEEECCCCeEEEEEEEe-CCCcEEEEEcCEEEEeCCCCccCHHHHHHhCccccCCCccCCCCCccHHHHHHHHcCCeEeC
Confidence            99865312445666652 1222347999999999995                          24678888899988876


Q ss_pred             CCCceeEeeeCccccccccC--ceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCcee
Q 011610          241 PVPSLFTFKIADSQLTELSG--VSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKG  318 (481)
Q Consensus       241 ~~p~l~~~~~~~~~~~~l~G--~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~  318 (481)
                      +....+.-...... ..+..  ++-.. .+.+..+|    +++..   |+  ..+...+.+++..          .+...
T Consensus       359 ~~~~q~~p~~~~~~-~~l~~~~~~~~g-~i~vn~~G----~RF~~---E~--~~~~~~~~ai~~~----------~~~~~  417 (572)
T 1d4d_A          359 LQYIQAHPTYSPAG-GVMITEAVRGNG-AIVVNREG----NRFMN---EI--TTRDKASAAILQQ----------KGESA  417 (572)
T ss_dssp             TTCEEEEEEEETTT-TEECCHHHHHTT-CEEECTTS----CCCSC---TT--SCHHHHHHHHHTS----------GGGCE
T ss_pred             CCceeEecccCCCc-cccchhhhccCc-eEEECCCC----CCccC---CC--CCHhHHHHHHHhC----------cCCeE
Confidence            65433221111100 00100  00011 11122222    22221   22  1111112222211          11123


Q ss_pred             EEEEec--CCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHH----
Q 011610          319 MLTVDF--VPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIAR----  392 (481)
Q Consensus       319 ~~~~d~--~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----  392 (481)
                      .+.+|-  ....  ..+...+    ..       ..     ......+++|++..|++++...+.+  +.++..+.    
T Consensus       418 ~~i~d~~~~~~~--~~~~~~~----~~-------~~-----~~~~~ti~ela~~~gi~~~~l~~tv--~~yn~~~~~g~D  477 (572)
T 1d4d_A          418 YLVFDDSIRKSL--KAIEGYV----HL-------NI-----VKEGKTIEELAKQIDVPAAELAKTV--TAYNGFVKSGKD  477 (572)
T ss_dssp             EEEECHHHHTTC--THHHHHH----HT-------TC-----CEEESSHHHHHHHHTCCHHHHHHHH--HHHHHHC-CCCC
T ss_pred             EEEEChHHhhhc--cchHHHh----hC-------Cc-----EEEeCCHHHHHHHcCCCHHHHHHHH--HHHHHHHhcCCC
Confidence            333331  0000  0010000    00       00     1112234555555666654332222  22333322    


Q ss_pred             ----------HhccCeEEEcccCCCceeEEecCCCCCCCCCc-ccccc-cCCCCeEEEEEEe-eccc--CcchHHHHHHH
Q 011610          393 ----------LLKHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMES-KIHPRLFFAGEVL-NVDG--VTGGFNFQNAW  457 (481)
Q Consensus       393 ----------~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~-~t~es-k~~~gLy~~GE~l-dv~g--~~GGynl~~A~  457 (481)
                                .+.+-||+....  ...+..|+|||.+++--. .+-+. ++|||||+|||+. .++|  +.||.+|.+|+
T Consensus       478 ~~fg~~~~~~~i~~~Pfya~~v--~p~~~~t~GGl~id~~~~Vl~~~g~~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~  555 (572)
T 1d4d_A          478 AQFERPDLPRELVVAPFYALEI--APAVHHTMGGLVIDTKAEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIV  555 (572)
T ss_dssp             TTTCCSCCCCCCCSSSEEEEEE--EEEEEEECCEEEBCTTCEEEBSSSSSEEEEEEECSTTEESTTTTSCCTTHHHHHHH
T ss_pred             cccCCCCCCCcCCCCCEEEEEE--EcccceeCCCeEECCCCeEEcCCCCcccCCeeECeecccCCCCCCCCchHhHHHHH
Confidence                      123345444322  234678999999885321 11234 7899999999976 4666  67999999999


Q ss_pred             HHHHHHHHHHhHHhhH
Q 011610          458 SGGYIAGTSIGKLSND  473 (481)
Q Consensus       458 ~sG~~AG~~aa~~~~~  473 (481)
                      ++||+||++||+++++
T Consensus       556 vfGr~Ag~~aa~~~~~  571 (572)
T 1d4d_A          556 TYGRIAGASAAKFAKD  571 (572)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999987753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.91  E-value=2.7e-23  Score=220.88  Aligned_cols=351  Identities=16%  Similarity=0.133  Sum_probs=187.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcc-hhHHhhcc-----CCCCh
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCAD-KMILAGHY-----PRGHK  120 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~-~~~~~~~~-----~~~~~  120 (481)
                      +.++||+|||||++|++||+.|++   |.+|+||||.... .....+++|.+...+.  .+ ...+...+     ...+.
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~--~ds~~~~~~d~l~~g~g~~d~   80 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGPVTEGSTFYAQGGIAAVFDE--TDSIDSHVEDTLIAGAGICDR   80 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSCTTC-------------CCS--HHHHHHHHHHHHHHTTTCCCH
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc---CCcEEEEECCCCCCCChhhcCCCEEEecCC--CCCHHHHHHHHHHhhcccCCH
Confidence            346899999999999999999997   6899999987543 3333444444322211  11 11111110     11122


Q ss_pred             hchhhHHhcCChHHHHHHHHhcCCcceeec----CCee-------------eec-CCChHHHHHHHHHHHHh-CCCEEEc
Q 011610          121 EFRGSFFSLHGPMDTMSWFSDHGVELKTED----DGRV-------------FPV-SDSSSSVIDCLLTEAKH-RGVVLQT  181 (481)
Q Consensus       121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~----~g~~-------------~p~-~~~a~~~~~~l~~~~~~-~Gv~i~~  181 (481)
                      ..+..+. . ...+.++|+.++|+++....    .+.+             ++. ......+...|.+.+++ .||+|++
T Consensus        81 ~~v~~~~-~-~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~~  158 (540)
T 1chu_A           81 HAVEFVA-S-NARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLE  158 (540)
T ss_dssp             HHHHHHH-H-HHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEEC
T ss_pred             HHHHHHH-H-hHHHHHHHHHHcCCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCEEEe
Confidence            2222211 1 12467788999998875433    2211             111 11234567778888888 7999999


Q ss_pred             CceEEEEEe-cCCC------CeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCccc
Q 011610          182 GKVVTTASS-DNAG------RKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVD  240 (481)
Q Consensus       182 ~~~V~~i~~-~~~~------~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~  240 (481)
                      ++.|++|.. ++ +      ..++|.+.+..++....+.|+.||+|||+              +|+|+.++.++|+.+..
T Consensus       159 ~~~v~~L~~~~~-g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~  237 (540)
T 1chu_A          159 RTNAVDLIVSDK-IGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVAN  237 (540)
T ss_dssp             SEEEEEEEEGGG-TTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHHHHTTCCEEC
T ss_pred             CcEEEEEEEcCC-CCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccCCCcCCCCCchHHHHHHHHcCCCCcC
Confidence            999999997 43 3      34567665311222347999999999995              46789999999999887


Q ss_pred             CCCce-eEeeeCccc-ccccc--CceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCc
Q 011610          241 PVPSL-FTFKIADSQ-LTELS--GVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCY  316 (481)
Q Consensus       241 ~~p~l-~~~~~~~~~-~~~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~  316 (481)
                      +.... .|..+..+. ...|-  .++-.. .+-+..+|    +++..+.     ..++-..|- -.+++.+..+..+.+ 
T Consensus       238 ~e~~q~hpt~~~~~~~~~~l~~e~~rg~g-~~lvn~~G----~RF~~~~-----~~~~el~~r-d~v~~ai~~~~~~~~-  305 (540)
T 1chu_A          238 LEFNQFHPTALYHPQARNFLLTEALRGEG-AYLKRPDG----TRFMPDF-----DERGELAPR-DIVARAIDHEMKRLG-  305 (540)
T ss_dssp             TTCEEEEEEEECSTTCTTCBCCHHHHHTT-CEEECTTS----CBCGGGT-----CTTGGGSCH-HHHHHHHHHHHHHHT-
T ss_pred             hHHHhhcCeeecCCCCCcceeehhhcCCc-eEEECCCC----CCCcccC-----CcccccCcH-HHHHHHHHHHHHhcC-
Confidence            65432 222222110 00010  000001 11121111    2222110     011211221 112333333332222 


Q ss_pred             eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610          317 KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH  396 (481)
Q Consensus       317 ~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~  396 (481)
                      ...+.+|+-+ +..+.+    ..                  .+|  .+..+++..|+|+.+                   
T Consensus       306 ~~~v~ld~~~-~~~~~~----~~------------------~~~--~i~~~~~~~Gid~~~-------------------  341 (540)
T 1chu_A          306 ADCMFLDISH-KPADFI----RQ------------------HFP--MIYEKLLGLGIDLTQ-------------------  341 (540)
T ss_dssp             CSCEEEECCS-SCSHHH----HH------------------HCH--HHHHHHHTTTCCTTT-------------------
T ss_pred             CceEEEeccc-CCHHHH----HH------------------hhh--hHHHHHHHhCcCCCC-------------------
Confidence            1234455432 122211    10                  111  245667778998763                   


Q ss_pred             CeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          397 CTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       397 ~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      -|++|..     .+..|+|||.+++-.    + +.|||||+|||+.  .++|  +.||.+|.+|+++|++||++|++++.
T Consensus       342 ~~i~v~p-----~~h~t~GGi~vd~~~----~-t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~  411 (540)
T 1chu_A          342 EPVPIVP-----AAHYTCGGVMVDDHG----R-TDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMP  411 (540)
T ss_dssp             SCEEEEE-----EEEEESCEEECCTTC----B-CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCeEeeh-----HHheecCcEEECCCC----C-CccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence            1344543     377899999988543    2 6899999999987  5766  67999999999999999999987753

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.89  E-value=1.3e-21  Score=210.31  Aligned_cols=352  Identities=18%  Similarity=0.155  Sum_probs=191.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCC--CcEEEEeCCCCC-C-ceEEecCCceeeccCCCcchhHHh-h-----ccCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPK--LNVVIIEKGKPL-S-KVKISGGGRCNVTNGHCADKMILA-G-----HYPRG  118 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g--~~V~llE~~~~g-~-k~~~sG~g~~n~~~~~~~~~~~~~-~-----~~~~~  118 (481)
                      .++||+|||||++|++||+.|++  .|  .+|+|||+.... . +..+.|+..+.+.+..  ...... +     .+. .
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~--~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~d--s~~~~~~d~~~~g~~~-~   78 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQ--ANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHD--SFEYHFHDTVAGGDWL-C   78 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTC--CHHHHHHHHHHHTTTC-S
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh--cCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCC--CHHHHHHHHHHhcCCC-C
Confidence            35899999999999999999999  57  999999976433 2 2223333222222211  111111 0     111 1


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecC--------------CChHHHHHHHHHHHHhCC-CEEEcCc
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVS--------------DSSSSVIDCLLTEAKHRG-VVLQTGK  183 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~--------------~~a~~~~~~l~~~~~~~G-v~i~~~~  183 (481)
                      ....+..+..  ...+.++|+..+|+++.....+.+++..              .....+...|.+.+.+.| ++|++++
T Consensus        79 d~~~v~~~~~--~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~  156 (602)
T 1kf6_A           79 EQDVVDYFVH--HCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEH  156 (602)
T ss_dssp             CHHHHHHHHH--HHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETE
T ss_pred             CHHHHHHHHH--HHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCC
Confidence            1222222111  1235678888999987655444332211              114578899999999888 9999999


Q ss_pred             eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEee
Q 011610          184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK  249 (481)
Q Consensus       184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~  249 (481)
                      .|++|..++ +...+|.+.+..++....+.|+.||+|||+              +|+++.++.+.|..+..+.  .+++.
T Consensus       157 ~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~~~~~~~tGdgi~~a~~aGa~~~~~e--~~qfh  233 (602)
T 1kf6_A          157 FVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDME--FVQYH  233 (602)
T ss_dssp             EEEEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEESTT--CEEEE
T ss_pred             EEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCcCCCCCcccHHHHHHHHcCCCccChh--Hhhcc
Confidence            999998765 344456543211222247999999999995              4678999999999887653  33332


Q ss_pred             eCccccc-cc--cCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhh--ccc------chhhHHHhHccCc--
Q 011610          250 IADSQLT-EL--SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVI--LRL------SAWGARYLFSSCY--  316 (481)
Q Consensus       250 ~~~~~~~-~l--~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~i--l~l------S~~~~~~~~~~~~--  316 (481)
                      ....... .+  .+++-.. .+-+..+|    +++..+....-  ..-...|..  +++      ++.+..++.+...  
T Consensus       234 Pt~~~~~~~l~~e~~rg~g-~~lvn~~G----~RF~~~y~~~~--~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~g~~  306 (602)
T 1kf6_A          234 PTGLPGSGILMTEGCRGEG-GILVNKNG----YRYLQDYGMGP--ETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS  306 (602)
T ss_dssp             EEECTTTCCBCCTHHHHTT-CEEECTTC----CCGGGGTTTCS--CCCSSCCCTTSGGGSCHHHHHHHHHHHHHHTCSBC
T ss_pred             ccccCCCcceechhhcCCc-eEEECCCC----CCccccccccc--cccccCCcccccccccHHHHHHHHHHHHHhcCCcc
Confidence            1110000 00  0000011 11121111    22222110000  000000110  111      2222222322211  


Q ss_pred             ---eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHH
Q 011610          317 ---KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIAR  392 (481)
Q Consensus       317 ---~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~  392 (481)
                         ...+.+|+- .+..+.+.+.                      +| . +..+++. .|+|+.+               
T Consensus       307 ~~~~~~v~ld~~-~~~~~~l~~~----------------------~~-~-~~~~~~~~~G~D~~~---------------  346 (602)
T 1kf6_A          307 TPRGDVVYLDLR-HLGEKKLHER----------------------LP-F-ICELAKAYVGVDPVK---------------  346 (602)
T ss_dssp             CTTCCBEEEECG-GGCHHHHHHH----------------------CH-H-HHHHHHHHHCCCTTT---------------
T ss_pred             CCCCcEEEeecc-cCCHHHHHHH----------------------HH-H-HHHHHHHhcCCCCCc---------------
Confidence               112444431 1222222111                      11 0 1233333 4777642               


Q ss_pred             HhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHh
Q 011610          393 LLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIG  468 (481)
Q Consensus       393 ~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa  468 (481)
                          -|++|..     .+..|+|||.+++-    ++. .|||||+|||+.  .++|  +.||.+|..|+++|++||++|+
T Consensus       347 ----~pi~v~p-----~~h~t~GGi~vd~~----~~~-~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa  412 (602)
T 1kf6_A          347 ----EPIPVRP-----TAHYTMGGIETDQN----CET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQAT  412 (602)
T ss_dssp             ----SCEEEEE-----EEEEECCEEECCTT----SBC-SSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             ----CceEEeh-----hheeeCCeEEECCC----Ccc-ccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence                2344433     36789999998743    233 899999999986  5776  5689999999999999999999


Q ss_pred             HHh
Q 011610          469 KLS  471 (481)
Q Consensus       469 ~~~  471 (481)
                      +++
T Consensus       413 ~~~  415 (602)
T 1kf6_A          413 ERA  415 (602)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            876

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.86  E-value=1.7e-22  Score=215.38  Aligned_cols=81  Identities=22%  Similarity=0.324  Sum_probs=69.0

Q ss_pred             ccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCC--CCCCc----ccccccCCCCeEEEEEEeecccCcchHHH
Q 011610          380 ASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPL--SEISL----NTMESKIHPRLFFAGEVLNVDGVTGGFNF  453 (481)
Q Consensus       380 ~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~--~ei~~----~t~esk~~~gLy~~GE~ldv~g~~GGynl  453 (481)
                      .+|+.++..+++..+          .++++|++++||+.+  ++|||    +|||+|.+||||||||++|++    ||| 
T Consensus       330 t~l~~~~q~~~~~~i----------~gle~a~~~~~G~~~~y~~i~p~~l~~tle~k~~~gLf~AGqi~g~~----Gy~-  394 (641)
T 3cp8_A          330 TSLPEDIQIAGLRSI----------PGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRPVENLFFAGQINGTS----GYE-  394 (641)
T ss_dssp             CCSCHHHHHHHHTTS----------TTCTTCCEEECCEEEEEEEECGGGBCTTSBBSSSBTEEECSGGGTBC----CHH-
T ss_pred             ccccHHHHHHHHhcC----------cchhhceEecceeeecceEECHHHcCCcccccCcCCEEEEEeecCCc----cHH-
Confidence            345566666666544          789999999999998  89999    899999999999999888875    799 


Q ss_pred             HHHHHHHHHHHHHHhHHhhHhhh
Q 011610          454 QNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       454 ~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                       |||++|++||.+|+.+++.+++
T Consensus       395 -eA~a~G~~AG~naa~~~~~~~~  416 (641)
T 3cp8_A          395 -EAAAQGLMAGINAVRKILGKEL  416 (641)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTCCC
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCC
Confidence             9999999999999998877654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.86  E-value=3.9e-21  Score=207.98  Aligned_cols=190  Identities=16%  Similarity=0.138  Sum_probs=121.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhcc----CCCCcEEEEeCCCCCCceEEecC-CceeeccCCCcchhHHh-----hccCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTV----APKLNVVIIEKGKPLSKVKISGG-GRCNVTNGHCADKMILA-----GHYPRG  118 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~----~~g~~V~llE~~~~g~k~~~sG~-g~~n~~~~~~~~~~~~~-----~~~~~~  118 (481)
                      .++||||||||+|||+||+.|++.    ++|.+|+||||..+++....+.+ ...|.... ..++..+.     ......
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s~AqG~~gi~a~l~-~ds~e~~~~~~~~~~~gl~   99 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLG-DNNADDYVRMVRTDLMGLV   99 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCSTTTTCEEEECCCCT-TSCHHHHHHHHHHHTTTCC
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCCcccccCcchheeecC-CCCHHHHHHHHHHhcCCCc
Confidence            468999999999999999999982    12899999998766542111212 01211111 11111111     111112


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceee-cCCeeee-------------------cC-----CChHHHHHHHHHHHH
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTE-DDGRVFP-------------------VS-----DSSSSVIDCLLTEAK  173 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~-~~g~~~p-------------------~~-----~~a~~~~~~l~~~~~  173 (481)
                      ....+..+ .. ...+.++|+.++|+++... ..+.+++                   ..     .....+...|.+.++
T Consensus       100 d~~~v~~l-~~-~a~~~i~~L~~~Gv~f~~~~~~G~~~~g~~~~~fg~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~a~  177 (662)
T 3gyx_A          100 REDLIYDL-GR-HVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAAK  177 (662)
T ss_dssp             CHHHHHHH-HH-HHHHHHHHHHHHTCCBCEECSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHHHHHHHHH
T ss_pred             cHHHHHHH-HH-HHHHHHHHHHHcCCCceecCCCCccccchhhhccccccccCccccccceecccCCHHHHHHHHHHHHH
Confidence            22222221 11 1235678889999998765 4454442                   00     013467788888888


Q ss_pred             hC--CCEEEcCceEEEEEecCCC---CeEEEEEeecccCceEEEEcCeEEEccCC-----------------------Ch
Q 011610          174 HR--GVVLQTGKVVTTASSDNAG---RKFLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQ  225 (481)
Q Consensus       174 ~~--Gv~i~~~~~V~~i~~~~~~---~~~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~g  225 (481)
                      +.  ||+|+.++.|++|..++ +   ...+|...+..++....+.|+.||+|||+                       +|
T Consensus       178 ~~~~gV~i~~~~~v~dLi~~~-~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~y~~~t~~~~~~~~~~~~~~tG  256 (662)
T 3gyx_A          178 NALGQDRIIERIFIVKLLLDK-NTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYRPRSVGEGMGRAWYPVWNAG  256 (662)
T ss_dssp             HHHCTTTEECSEEECCCEECS-SSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBS
T ss_pred             hcCCCcEEEEceEEEEEEEeC-CccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccccccCcCCccccccccCCCCCcc
Confidence            87  99999999999998876 4   45566654322333467999999999994                       34


Q ss_pred             hHHHHHHHcCCCcccCC
Q 011610          226 QGHRLAAQLGHSIVDPV  242 (481)
Q Consensus       226 ~g~~la~~~G~~i~~~~  242 (481)
                      +|+.+|.++|+.+..+.
T Consensus       257 dG~~mA~~aGA~l~~me  273 (662)
T 3gyx_A          257 STYTMCAQVGAEMTMME  273 (662)
T ss_dssp             HHHHHHHTTTCEEECTT
T ss_pred             hHHHHHHHhCCcccCCC
Confidence            68999999999988776

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.86  E-value=2.7e-21  Score=206.21  Aligned_cols=80  Identities=29%  Similarity=0.480  Sum_probs=65.7

Q ss_pred             ccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCC-------CCCCCCCcccccccCCCCeEEEEEEeecccCcchHH
Q 011610          380 ASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGG-------VPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFN  452 (481)
Q Consensus       380 ~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GG-------v~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGyn  452 (481)
                      .+|+.+...+++..+          .|++.|.++++|       |+..+++ .|||+|.+|||||||   ++.|.+ ||+
T Consensus       336 t~lp~~~q~~~~~~i----------pGle~a~i~r~Gy~ieyd~i~p~~L~-~tle~k~~~gLf~AG---qinGtt-GYe  400 (651)
T 3ces_A          336 TSLPFDVQMQIVRSM----------QGMENAKIVRPGYAIEYDFFDPRDLK-PTLESKFIQGLFFAG---QINGTT-GYE  400 (651)
T ss_dssp             CCSCHHHHHHHHHTS----------TTCTTCCEEECCEEEEEEEECGGGBC-TTSBBSSSBTEEECS---GGGTCC-CHH
T ss_pred             CCCCHHHHHHHHhhC----------CCccceEEEeccceeccCccchhhcC-ccccccCCCCeEEEE---EecCCc-ChH
Confidence            345556666666544          689999999999       7788888 699999999999999   556766 699


Q ss_pred             HHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          453 FQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       453 l~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                        |||++|.+||.+||.++..+.+
T Consensus       401 --EAaaqGl~AG~nAa~~~~~~~~  422 (651)
T 3ces_A          401 --EAAAQGLLAGLNAARLSADKEG  422 (651)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCC
Confidence              8999999999999998876654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.86  E-value=7e-21  Score=206.35  Aligned_cols=200  Identities=15%  Similarity=0.146  Sum_probs=127.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHh---ccCCCCcEEEEeCCCCCCceEEecCC-cee--eccCC----CcchhHHhhc---
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAK---TVAPKLNVVIIEKGKPLSKVKISGGG-RCN--VTNGH----CADKMILAGH---  114 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la---~~~~g~~V~llE~~~~g~k~~~sG~g-~~n--~~~~~----~~~~~~~~~~---  114 (481)
                      +.++||+|||||++||+||+.|+   +. .|.+|+||||...++....++++ .++  +....    ..+...+...   
T Consensus        20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~-~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~   98 (643)
T 1jnr_A           20 VVETDILIIGGGFSGCGAAYEAAYWAKL-GGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTL   98 (643)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTT-TTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHH
T ss_pred             eccCCEEEECcCHHHHHHHHHHhhhhhh-CCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHH
Confidence            45689999999999999999999   31 48999999987654321112221 222  10000    0111121111   


Q ss_pred             --cCCCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecCC-----ChHHHHHHHHHHHHhC-CC-EEEcCceE
Q 011610          115 --YPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSD-----SSSSVIDCLLTEAKHR-GV-VLQTGKVV  185 (481)
Q Consensus       115 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~-----~a~~~~~~l~~~~~~~-Gv-~i~~~~~V  185 (481)
                        .......++..+...  ..+.++|+.++|+++.....+.++|...     ....+...|.+.+++. || +|++++.|
T Consensus        99 ~g~~l~d~~~v~~~~~~--~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v  176 (643)
T 1jnr_A           99 DMMGLAREDLVADYARH--VDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFI  176 (643)
T ss_dssp             HTTTCCCHHHHHHHHHH--HHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEE
T ss_pred             HhcCcCcHHHHHHHHHH--HHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEE
Confidence              011122232222211  3467789999999887655566655321     1345677888888887 99 99999999


Q ss_pred             EEEEecCCC---CeEEEEEeecccCceEEEEcCeEEEccCC-----------------------ChhHHHHHHHcCCCcc
Q 011610          186 TTASSDNAG---RKFLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQQGHRLAAQLGHSIV  239 (481)
Q Consensus       186 ~~i~~~~~~---~~~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~g~g~~la~~~G~~i~  239 (481)
                      ++|..++ +   ...+|.+.+..++....+.|+.||+|||+                       +|+|+.++.++|+.+.
T Consensus       177 ~~L~~~~-~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~~~~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~  255 (643)
T 1jnr_A          177 FELLKDN-NDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGAMLT  255 (643)
T ss_dssp             EEEEECT-TCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBSHHHHHHHHHTCCEE
T ss_pred             EEEEEcC-CccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccccCcccccccccccCCCCCccHHHHHHHHhCCccC
Confidence            9999875 4   45566653212233347999999999994                       2568999999999998


Q ss_pred             cCCCceeEeeeC
Q 011610          240 DPVPSLFTFKIA  251 (481)
Q Consensus       240 ~~~p~l~~~~~~  251 (481)
                      .+.+.++|..+.
T Consensus       256 ~me~qf~pt~~~  267 (643)
T 1jnr_A          256 QFEHRFIPFRFK  267 (643)
T ss_dssp             STTCCBCCEEET
T ss_pred             Cchheeeccccc
Confidence            887766665443

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.82  E-value=9.3e-20  Score=193.73  Aligned_cols=146  Identities=16%  Similarity=0.198  Sum_probs=89.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC--CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ..+||+|||||++|++||+.|++  .|.+|+|||+.  .+|       +..||...... ..           ..+... 
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~~~~iG-------~~~Cnps~GGi-a~-----------g~lv~e-   83 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLNADTIG-------QMSCNPAIGGI-AK-----------GIVVRE-   83 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTT-------CCCSCSEEECT-TH-----------HHHHHH-
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEecccccC-------CcCcccccccc-ch-----------HHHHHH-
Confidence            46999999999999999999999  79999999975  444       34455432211 00           011111 


Q ss_pred             HhcCChHHHHHHHHhcCCcceeec--CCe-e-ee-cCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEE
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTED--DGR-V-FP-VSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~--~g~-~-~p-~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                      +..++. .+..+....++.+....  .+. . .+ ...+...+...|.+.+++ .|++| ++++|++|..++ +..++|.
T Consensus        84 ldalgg-~~~~~~d~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~-g~V~GV~  160 (637)
T 2zxi_A           84 IDALGG-EMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKN-NQVVGVR  160 (637)
T ss_dssp             HHHHTC-SHHHHHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESS-SBEEEEE
T ss_pred             HHHhhh-HHHHHhhhcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecC-CEEEEEE
Confidence            011110 01122233333332211  010 0 00 012345678888888888 59999 578999998765 4556788


Q ss_pred             EeecccCceEEEEcCeEEEccCCC
Q 011610          201 VEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       201 ~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      +.+     +..+.||.||+|||+.
T Consensus       161 t~d-----G~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          161 TNL-----GVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             ETT-----SCEEECSEEEECCTTC
T ss_pred             ECC-----CcEEEeCEEEEccCCC
Confidence            775     5689999999999974

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.80  E-value=4.7e-19  Score=187.45  Aligned_cols=193  Identities=16%  Similarity=0.161  Sum_probs=121.8

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEec----CCceeeccCCCcchhHHhhccCCCChh
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISG----GGRCNVTNGHCADKMILAGHYPRGHKE  121 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG----~g~~n~~~~~~~~~~~~~~~~~~~~~~  121 (481)
                      ....+||+|||||++|++||+.|++  .|++|+|||+.. ++.+....+    .+.|+......... .-...|....  
T Consensus       104 ~~~~~DVVIVGgGpaGL~aA~~La~--~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~-gGag~~sdgk--  178 (549)
T 3nlc_A          104 ENLTERPIVIGFGPCGLFAGLVLAQ--MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGE-GGAGTFSDGK--  178 (549)
T ss_dssp             TTCCCCCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSST-TGGGTTSCCC--
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEEccCcccccccchhcccccccccccccceecc-CCcccccCCc--
Confidence            3356899999999999999999999  799999999763 321111000    11121111100000 0001111100  


Q ss_pred             chhhH-HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE
Q 011610          122 FRGSF-FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       122 ~~~~~-l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                      +.... ...+...+..+++...|.+......+..+........+.+.|.+.+++.|++|+++++|+++..++ ++.+.|+
T Consensus       179 l~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~-~~v~gV~  257 (549)
T 3nlc_A          179 LYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED-GQITGVT  257 (549)
T ss_dssp             CCCCSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESS-SBEEEEE
T ss_pred             eEEEeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC-CEEEEEE
Confidence            10000 011223567788888887654432222222223346788899999999999999999999998875 4456788


Q ss_pred             EeecccCceEEEEcCeEEEccCCChh-HHHHHHHcCCCcccCCCceeEeeeC
Q 011610          201 VEKRTMNLVECIEADYLLIASGSSQQ-GHRLAAQLGHSIVDPVPSLFTFKIA  251 (481)
Q Consensus       201 ~~~~~~~~~~~i~ad~VIlAtG~~g~-g~~la~~~G~~i~~~~p~l~~~~~~  251 (481)
                      +.+     +.++.||.||+|+|+++. .+.+++..|+.+ +..|..+.++++
T Consensus       258 l~~-----G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~~-~~~~~~vgVrve  303 (549)
T 3nlc_A          258 LSN-----GEEIKSRHVVLAVGHSARDTFEMLHERGVYM-EAKPFSVGFRIE  303 (549)
T ss_dssp             ETT-----SCEEECSCEEECCCTTCHHHHHHHHHTTCCC-EECCEEEEEEEE
T ss_pred             ECC-----CCEEECCEEEECCCCChhhHHHHHHHcCCCc-ccceEEEEEEec
Confidence            875     668999999999998764 567888999885 456666666654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.79  E-value=8.3e-18  Score=175.84  Aligned_cols=177  Identities=18%  Similarity=0.269  Sum_probs=109.9

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccCCCcchhHHhh------ccCCCChhchh
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAG------HYPRGHKEFRG  124 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~~~~~~~~~~~------~~~~~~~~~~~  124 (481)
                      ||+|||||++|++||+.|++  .|.+|+||||...++ +....|+..+.+.. .. ++.....      .+. .....+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~--~G~~V~viek~~~~g~s~~a~Ggi~~~~~~-~d-~~~~~~~d~l~~g~~~-~d~~~v~   75 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRR--AGKKVTLISKRIDGGSTPIAKGGVAASVGS-DD-SPELHAQDTIRVGDGL-CDVKTVN   75 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCCEEEECSSTTCSSGGGCCSCEECCCST-TC-CHHHHHHHHHHHHTTC-SCHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCchHHHHhCCeEEeCCC-CC-CHHHHHHHHHHhcCCc-CCHHHHH
Confidence            89999999999999999998  789999999873333 22233332222221 11 1111111      111 1222222


Q ss_pred             hHHhcCChHHHHHHHHhcCCcceee---cCCeeee-----cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCe
Q 011610          125 SFFSLHGPMDTMSWFSDHGVELKTE---DDGRVFP-----VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK  196 (481)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~Gi~~~~~---~~g~~~p-----~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~  196 (481)
                      .+..  ...+.++|+.++|+++...   ..+..+|     .......+...|.+.+++.|++++++++| ++..++ +..
T Consensus        76 ~~~~--~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~-~~v  151 (472)
T 2e5v_A           76 YVTS--EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKD-GKV  151 (472)
T ss_dssp             HHHH--HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEET-TEE
T ss_pred             HHHH--HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeC-CEE
Confidence            2111  1235677888899876531   1222222     12235678888999888899999999999 998765 333


Q ss_pred             EEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccC
Q 011610          197 FLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDP  241 (481)
Q Consensus       197 ~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~  241 (481)
                      .+|.+.+   . ...+.||.||+|||+              ++++..++.+.|..+..+
T Consensus       152 ~Gv~v~~---~-~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~  206 (472)
T 2e5v_A          152 TGFVTEK---R-GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADM  206 (472)
T ss_dssp             EEEEETT---T-EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECT
T ss_pred             EEEEEEe---C-CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCC
Confidence            4555431   0 235789999999996              355677888888877554

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.48  E-value=4.4e-14  Score=139.05  Aligned_cols=112  Identities=22%  Similarity=0.374  Sum_probs=72.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++|||+||||||||++||+.|++  .|++|+|+|++.+|        |+|  .+..+.+      .|+...  .      
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~--~g~~V~liE~~~~g--------G~~--~~~~~i~------~~p~~~--~------   58 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASR--ANLKTVMIERGIPG--------GQM--ANTEEVE------NFPGFE--M------   58 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT--------GGG--GGCSCBC------CSTTCS--S------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC--------Cee--ecccccC------CcCCcc--c------
Confidence            57999999999999999999999  79999999998776        566  3332221      111000  0      


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                    ....++.........+.+..+..+..+......   ....+...      
T Consensus        59 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------   99 (312)
T 4gcm_A           59 ------------------------------ITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKG---EYKVINFG------   99 (312)
T ss_dssp             ------------------------------BCHHHHHHHHHHHHHHTTCEEEECCCCEEEECS---SCEEEECS------
T ss_pred             ------------------------------cchHHHHHHHHHHHhhccccccceeeeeeeeee---cceeeccC------
Confidence                                          011223333334445566777777666655433   22333333      


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +.++++|+||+|||+.+
T Consensus       100 ~~~~~~d~liiAtGs~~  116 (312)
T 4gcm_A          100 NKELTAKAVIIATGAEY  116 (312)
T ss_dssp             SCEEEEEEEEECCCEEE
T ss_pred             CeEEEeceeEEcccCcc
Confidence            57899999999999754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.47  E-value=2.7e-13  Score=135.88  Aligned_cols=180  Identities=17%  Similarity=0.092  Sum_probs=105.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccC-CCcc--h-----------hHHhh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNG-HCAD--K-----------MILAG  113 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~-~~~~--~-----------~~~~~  113 (481)
                      +++||+|||||++|+++|+.|++  +|++|+|||+. .++...... ++.+-.... ....  .           ..+..
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~--~G~~V~vlE~~~~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIGTGTSSR-NSEVIHAGIYYPADSLKARLCVRGKHLLYEYCA   79 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSCSTTSS-SCCEECCCCSSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCccCcC-CccccccCccCCCCCHhHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999  79999999976 455211000 011100000 0000  0           00000


Q ss_pred             c----cCCCChhch-hhHHhcCChHHHHHHHHhcCCc-ceeec--------------CCeeeecC--CChHHHHHHHHHH
Q 011610          114 H----YPRGHKEFR-GSFFSLHGPMDTMSWFSDHGVE-LKTED--------------DGRVFPVS--DSSSSVIDCLLTE  171 (481)
Q Consensus       114 ~----~~~~~~~~~-~~~l~~~~~~~~~~~~~~~Gi~-~~~~~--------------~g~~~p~~--~~a~~~~~~l~~~  171 (481)
                      .    +........ ...-.........++....|++ ...-.              .+..+|..  .+...+...|.+.
T Consensus        80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (369)
T 3dme_A           80 ARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGD  159 (369)
T ss_dssp             HHTCCEECCCEEEEECSHHHHTTHHHHHHHHHHTTCCCCEEEEHHHHHHHCTTCCCSEEEEETTCEEECHHHHHHHHHHH
T ss_pred             HcCCCcccCCEEEEecCHHHHHHHHHHHHHHHHcCCCceeecCHHHHHHhCCCceeeeeeECCCCEEECHHHHHHHHHHH
Confidence            0    000000000 0000000112334455556654 22110              01222222  2467889999999


Q ss_pred             HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHc-CCC
Q 011610          172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQL-GHS  237 (481)
Q Consensus       172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~-G~~  237 (481)
                      +++.|++|+++++|++|..++ ++.+.|++.+   +...++.||.||+|+|++.  ..+++.+ |++
T Consensus       160 ~~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~---g~~~~~~a~~VV~A~G~~s--~~l~~~~~g~~  220 (369)
T 3dme_A          160 AESDGAQLVFHTPLIAGRVRP-EGGFELDFGG---AEPMTLSCRVLINAAGLHA--PGLARRIEGIP  220 (369)
T ss_dssp             HHHTTCEEECSCCEEEEEECT-TSSEEEEECT---TSCEEEEEEEEEECCGGGH--HHHHHTEETSC
T ss_pred             HHHCCCEEECCCEEEEEEEcC-CceEEEEECC---CceeEEEeCEEEECCCcch--HHHHHHhcCCC
Confidence            999999999999999999875 4457787764   1125899999999999875  5788888 876

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.47  E-value=2.2e-13  Score=137.66  Aligned_cols=164  Identities=20%  Similarity=0.198  Sum_probs=92.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCC--CChhchhhH
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPR--GHKEFRGSF  126 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~--~~~~~~~~~  126 (481)
                      .|||+||||||+|+++|+.|++  .|++|+|||+. .++....+ |++   ++.       .....+.-  .........
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~~~~~~~~~-g~~---l~~-------~~l~~l~~~~~~~~~~~~~   70 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEIGSPVRC-GEG---LSK-------GILNEADIKADRSFIANEV   70 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSTTCSCCS-CCE---EET-------HHHHHTTCCCCTTTEEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCCCce-ecc---cCH-------HHHHHcCCCchhhhhhccc
Confidence            4899999999999999999999  79999999964 55532211 110   000       01111100  000000000


Q ss_pred             --HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          127 --FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       127 --l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                        ...+.+..      ...+.......+..+........+...|.+.+.+.|++++++++|+++..++ +....+.... 
T Consensus        71 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~-~~~~~v~~~~-  142 (397)
T 3oz2_A           71 KGARIYGPSE------KRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN-GKVAGAKIRH-  142 (397)
T ss_dssp             SEEEEECTTC------SSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET-TEEEEEEEEE-
T ss_pred             ceEEEEeCCC------ceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeecc-ceeeeeeecc-
Confidence              00000000      0000000000000000112356777888899999999999999999998875 3333444332 


Q ss_pred             ccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          205 TMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                       .+...+++||.||.|+|..+   .+.+.+|...
T Consensus       143 -~~~~~~~~a~~vIgAdG~~S---~vr~~~g~~~  172 (397)
T 3oz2_A          143 -NNEIVDVRAKMVIAADGFES---EFGRWAGLKS  172 (397)
T ss_dssp             -TTEEEEEEEEEEEECCCTTC---HHHHHHTCGG
T ss_pred             -cccceEEEEeEEEeCCcccc---HHHHHcCCCc
Confidence             23346799999999999875   4666777654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.42  E-value=4.9e-13  Score=134.79  Aligned_cols=181  Identities=13%  Similarity=0.088  Sum_probs=105.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcc--------hhHHhhccCCC-
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCAD--------KMILAGHYPRG-  118 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~--------~~~~~~~~~~~-  118 (481)
                      .++||+|||||++|+++|++|++   |++|+|||+. .++........|..+  .....+        ...+...+... 
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La~---G~~V~vlE~~~~~g~~as~~~~g~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~   82 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLSA---HGRVVVLEREAQPGYHSTGRSAAHYT--VAYGTPQVRALTAASRAFFDNPPAGF   82 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSSSTTSSGGGSCCCEEC--SSSSCHHHHHHHHHHHHHHHSCCTTS
T ss_pred             CcCCEEEECCcHHHHHHHHHHhC---CCCEEEEECCCCccccccccccceee--cccCCHHHHHHHHHHHHHHHHhhhhh
Confidence            46899999999999999999994   8999999976 565211100011111  100000        00111111100 


Q ss_pred             --Chhchh-hHHh---cCCh---HHHHHHHHhcCCcceee-----------------cCCeeeecC--CChHHHHHHHHH
Q 011610          119 --HKEFRG-SFFS---LHGP---MDTMSWFSDHGVELKTE-----------------DDGRVFPVS--DSSSSVIDCLLT  170 (481)
Q Consensus       119 --~~~~~~-~~l~---~~~~---~~~~~~~~~~Gi~~~~~-----------------~~g~~~p~~--~~a~~~~~~l~~  170 (481)
                        ...+.. ..+.   .-..   ....++++..|++...-                 ..+..+|..  .+...++..|.+
T Consensus        83 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  162 (381)
T 3nyc_A           83 CEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLR  162 (381)
T ss_dssp             CSSCSEEECCEEEECSSCCHHHHHHHHHHHHHHCTTCEEECHHHHHHHSTTBCGGGCCCEEEETTCEEECHHHHHHHHHH
T ss_pred             CCcccccccceEEEechHHHHHHHHHHHHHHHcCCCcEEeCHHHHHHhCCCcccccceEEEEcCCCceECHHHHHHHHHH
Confidence              000000 0000   0000   12233444455433210                 012233322  246788999999


Q ss_pred             HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcccCCCc
Q 011610          171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPS  244 (481)
Q Consensus       171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~~~p~  244 (481)
                      .+++.|++|+++++|++|..++  +.+.|++.+     + +++||.||+|+|++.  ..+++.+|+...++.|.
T Consensus       163 ~a~~~Gv~i~~~~~V~~i~~~~--~~~~V~t~~-----g-~i~a~~VV~A~G~~s--~~l~~~~g~~~~~~~p~  226 (381)
T 3nyc_A          163 GIRRNQGQVLCNHEALEIRRVD--GAWEVRCDA-----G-SYRAAVLVNAAGAWC--DAIAGLAGVRPLGLQPK  226 (381)
T ss_dssp             HHHHTTCEEESSCCCCEEEEET--TEEEEECSS-----E-EEEESEEEECCGGGH--HHHHHHHTCCCCCCEEE
T ss_pred             HHHHCCCEEEcCCEEEEEEEeC--CeEEEEeCC-----C-EEEcCEEEECCChhH--HHHHHHhCCCCCceeee
Confidence            9999999999999999999875  568888774     4 899999999999876  46777888752244443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.42  E-value=9.7e-13  Score=133.90  Aligned_cols=177  Identities=18%  Similarity=0.213  Sum_probs=101.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcc--------hhH----HhhccC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD--------KMI----LAGHYP  116 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~--------~~~----~~~~~~  116 (481)
                      .++||+|||||++|+++|++|++  .|.+|+|||+...+.....+++....+......+        ...    +.....
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAE--RGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCE   80 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhC
Confidence            35899999999999999999999  7999999997755421111111111111111000        000    000000


Q ss_pred             CC----Chhch--hhHH--hcCChHHHHHHHHhcCCcceeec-----------------CCeeeecC--CChHHHHHHHH
Q 011610          117 RG----HKEFR--GSFF--SLHGPMDTMSWFSDHGVELKTED-----------------DGRVFPVS--DSSSSVIDCLL  169 (481)
Q Consensus       117 ~~----~~~~~--~~~l--~~~~~~~~~~~~~~~Gi~~~~~~-----------------~g~~~p~~--~~a~~~~~~l~  169 (481)
                      ..    ...+.  ....  ......+..+++...|++...-+                 .+..+|..  .....++..|.
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  160 (397)
T 2oln_A           81 RRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALF  160 (397)
T ss_dssp             CCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHH
T ss_pred             ccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHH
Confidence            00    00000  0000  00112344455666665432100                 01112211  13467888999


Q ss_pred             HHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          170 TEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       170 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +.+++.|++|+++++|++|..++  +.+.|++.+      .+++||.||+|+|++.  ..+++.+|..
T Consensus       161 ~~a~~~Gv~i~~~~~V~~i~~~~--~~v~v~t~~------g~i~a~~VV~A~G~~s--~~l~~~~g~~  218 (397)
T 2oln_A          161 TLAQAAGATLRAGETVTELVPDA--DGVSVTTDR------GTYRAGKVVLACGPYT--NDLLEPLGAR  218 (397)
T ss_dssp             HHHHHTTCEEEESCCEEEEEEET--TEEEEEESS------CEEEEEEEEECCGGGH--HHHHGGGTCC
T ss_pred             HHHHHcCCEEECCCEEEEEEEcC--CeEEEEECC------CEEEcCEEEEcCCcCh--HHHhhhcCCC
Confidence            99999999999999999998765  567776653      4799999999999875  3567777753

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.41  E-value=8.9e-13  Score=136.03  Aligned_cols=84  Identities=15%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCc---eEEEEEecCCCCeEE-EEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGK---VVTTASSDNAGRKFL-LKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~---~V~~i~~~~~~~~~~-V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      .+..++..|.+.+++.|++|++++   +|++|..++  +.+. |++.+     +.+++||.||+|+|++..  .++. ++
T Consensus       159 ~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v~gV~t~~-----G~~i~Ad~VV~AtG~~s~--~l~~-l~  228 (438)
T 3dje_A          159 HARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTAD-----GKIWRAERTFLCAGASAG--QFLD-FK  228 (438)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEEEEEEETT-----TEEEECSEEEECCGGGGG--GTSC-CT
T ss_pred             cHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeEEEEEECC-----CCEEECCEEEECCCCChh--hhcC-cc
Confidence            357889999999999999999999   999998865  4554 88875     668999999999998753  3333 55


Q ss_pred             CCcccCCCceeEeeeCcc
Q 011610          236 HSIVDPVPSLFTFKIADS  253 (481)
Q Consensus       236 ~~i~~~~p~l~~~~~~~~  253 (481)
                      ..+.|....+..+.+.+.
T Consensus       229 ~~~~p~~~~~~~~~l~~~  246 (438)
T 3dje_A          229 NQLRPTAWTLVHIALKPE  246 (438)
T ss_dssp             TCCEEEEEEEEEEECCGG
T ss_pred             cceeeEEEEEEEEEcChH
Confidence            555555444555555543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.41  E-value=2.5e-12  Score=128.01  Aligned_cols=128  Identities=17%  Similarity=0.190  Sum_probs=85.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+|||||++|+++|+.|++  .|++|+|+|+. .+|        |.|.......        ... ....+     .
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~vie~~~~~g--------g~~~~~~~~~--------~~~-~~~~~-----~   58 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRR--SGLSYVILDAEASPG--------GAWQHAWHSL--------HLF-SPAGW-----S   58 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--SSCCEEEECCSSSSS--------GGGGGSCTTC--------BCS-SCGGG-----S
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCC--------CcccCCCCCc--------Eec-Cchhh-----h
Confidence            4799999999999999999999  78999999965 555        3332111000        000 00000     0


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE-EEEeecccC
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL-LKVEKRTMN  207 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~-V~~~~~~~~  207 (481)
                      .+           .+....  .....||   ....+.+.+.+.+++.|++++++++|+++..++  +.|. |++.+    
T Consensus        59 ~~-----------~~~~~~--~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~v~~~~----  116 (357)
T 4a9w_A           59 SI-----------PGWPMP--ASQGPYP---ARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFG--ERLRVVARDG----  116 (357)
T ss_dssp             CC-----------SSSCCC--CCSSSSC---BHHHHHHHHHHHHHHTTCCEECSCCEEEEEEET--TEEEEEETTS----
T ss_pred             hC-----------CCCCCC--CCccCCC---CHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECC--CcEEEEEeCC----
Confidence            00           000000  1112222   346778888889999999999999999998875  6777 77764    


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                       + ++.+|+||+|||+.+
T Consensus       117 -g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A          117 -R-QWLARAVISATGTWG  132 (357)
T ss_dssp             -C-EEEEEEEEECCCSGG
T ss_pred             -C-EEEeCEEEECCCCCC
Confidence             4 899999999999643

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.41  E-value=1.3e-12  Score=132.17  Aligned_cols=173  Identities=15%  Similarity=0.133  Sum_probs=99.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCC-c--ch-------h----HHhhc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHC-A--DK-------M----ILAGH  114 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~-~--~~-------~----~~~~~  114 (481)
                      +++||+|||||++|+++|++|++  .|.+|+|||+...+.....++. ...+.+... .  ..       .    .+...
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~--~G~~V~vie~~~~~~~~g~s~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~   78 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPHTNGSHHG-DTRIIRHAYGEGREYVPLALRSQELWYELEKE   78 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSCSSSSSCS-SEEEECSSCTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCCCCCCC-cchhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999  7999999997755421111111 111111100 0  00       0    01111


Q ss_pred             cCCC----ChhchhhHHh-cC-ChHHHHHHHHhcCCcceeec-----------------CCeeeecC--CChHHHHHHHH
Q 011610          115 YPRG----HKEFRGSFFS-LH-GPMDTMSWFSDHGVELKTED-----------------DGRVFPVS--DSSSSVIDCLL  169 (481)
Q Consensus       115 ~~~~----~~~~~~~~l~-~~-~~~~~~~~~~~~Gi~~~~~~-----------------~g~~~p~~--~~a~~~~~~l~  169 (481)
                      +...    ...+. .... .. ......++++..|++...-.                 .+.++|..  .....+...|.
T Consensus        79 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  157 (389)
T 2gf3_A           79 THHKIFTKTGVLV-FGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYR  157 (389)
T ss_dssp             CSSCCEECCCEEE-EEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHH
T ss_pred             hCCcceeecceEE-EcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHH
Confidence            1000    00000 0000 00 01233345555665432110                 01112211  12468889999


Q ss_pred             HHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          170 TEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       170 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      +.+++.|++++++++|++++.++  +.+.|++.+      .++.||.||+|+|.+.  ..++..+|
T Consensus       158 ~~~~~~Gv~i~~~~~v~~i~~~~--~~~~v~~~~------g~~~a~~vV~A~G~~~--~~l~~~~g  213 (389)
T 2gf3_A          158 ELAEARGAKVLTHTRVEDFDISP--DSVKIETAN------GSYTADKLIVSMGAWN--SKLLSKLN  213 (389)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECS--SCEEEEETT------EEEEEEEEEECCGGGH--HHHGGGGT
T ss_pred             HHHHHCCCEEEcCcEEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCccH--HHHhhhhc
Confidence            99999999999999999999865  557777653      4799999999999875  35666666

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.41  E-value=1.4e-12  Score=131.82  Aligned_cols=68  Identities=21%  Similarity=0.191  Sum_probs=55.7

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ....+...|.+.+++.|++++++++|+++..++  +.+.|++.+     + ++.||.||+|+|.+.  ..++..+|..
T Consensus       162 ~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~~v~~~~-----g-~~~a~~vV~A~G~~s--~~l~~~~~~~  229 (382)
T 1ryi_A          162 EPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EALFIKTPS-----G-DVWANHVVVASGVWS--GMFFKQLGLN  229 (382)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSEEEEETT-----E-EEEEEEEEECCGGGT--HHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC--CEEEEEcCC-----c-eEEcCEEEECCChhH--HHHHHhcCCC
Confidence            457788999999999999999999999998765  556777664     4 799999999999875  3577777764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.41  E-value=2.6e-12  Score=129.86  Aligned_cols=179  Identities=19%  Similarity=0.146  Sum_probs=104.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCce--EEecCCceeeccCCCc----chhHHh----hc----
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKV--KISGGGRCNVTNGHCA----DKMILA----GH----  114 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~--~~sG~g~~n~~~~~~~----~~~~~~----~~----  114 (481)
                      .++||+|||||++|+++|++|++  .|.+|+|||+..++...  ..+|.-++........    ....+.    ..    
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~--~G~~V~lle~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   81 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAK--RGEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYGFS   81 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999  79999999987665311  1111111111100000    000000    00    


Q ss_pred             cCCCChhchhhHHhcCCh------HHHHHHHHhcCCcceeec-----------------CCeeeecC--CChHHHHHHHH
Q 011610          115 YPRGHKEFRGSFFSLHGP------MDTMSWFSDHGVELKTED-----------------DGRVFPVS--DSSSSVIDCLL  169 (481)
Q Consensus       115 ~~~~~~~~~~~~l~~~~~------~~~~~~~~~~Gi~~~~~~-----------------~g~~~p~~--~~a~~~~~~l~  169 (481)
                      +.... .+.    ...+.      ....+++++.|++....+                 .+.++|..  .+...+...|.
T Consensus        82 ~~~~g-~l~----~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  156 (382)
T 1y56_B           82 FKQTG-YLF----LLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFA  156 (382)
T ss_dssp             EECCC-EEE----EECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHH
T ss_pred             eeccc-eEE----EEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHH
Confidence            00000 000    00010      123344455665433211                 01122221  14678889999


Q ss_pred             HHHHhCCCEEEcCceEEEEEecCCCCeEE-EEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc-ccCCCc
Q 011610          170 TEAKHRGVVLQTGKVVTTASSDNAGRKFL-LKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI-VDPVPS  244 (481)
Q Consensus       170 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~-V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i-~~~~p~  244 (481)
                      +.+++.|++|+++++|+++..++  +.+. |++.+     + +++||.||+|+|++.  ..+++.+|... .|+.|.
T Consensus       157 ~~~~~~Gv~i~~~~~v~~i~~~~--~~v~gv~~~~-----g-~i~a~~VV~A~G~~s--~~l~~~~g~~~~~~~~~~  223 (382)
T 1y56_B          157 VKAKEYGAKLLEYTEVKGFLIEN--NEIKGVKTNK-----G-IIKTGIVVNATNAWA--NLINAMAGIKTKIPIEPY  223 (382)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESS--SBEEEEEETT-----E-EEECSEEEECCGGGH--HHHHHHHTCCSCCCCEEE
T ss_pred             HHHHHCCCEEECCceEEEEEEEC--CEEEEEEECC-----c-EEECCEEEECcchhH--HHHHHHcCCCcCcCCCee
Confidence            99999999999999999998875  4554 77764     4 799999999999875  34667777652 244443

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=99.41  E-value=9.2e-14  Score=138.54  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=56.0

Q ss_pred             cCCCceeEEecCCCCC--CCCC-c----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610          404 KGQFKDEFVTAGGVPL--SEIS-L----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL  476 (481)
Q Consensus       404 ~~~~~~a~vt~GGv~~--~ei~-~----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~  476 (481)
                      ..|++.|++++.|+..  +.|| |    .|||+|.+||||||||+.+++|    |.  .|+++|.+||.+|+.+++.+++
T Consensus       293 IpGLE~a~~~r~G~~~ey~~i~sP~~L~~tle~k~~~~Lf~AGqi~G~~G----y~--eAaa~Gl~AG~naa~~~~g~~p  366 (443)
T 3g5s_A          293 IPGLENAEIVRYGVMHRNTYLNAPRLLGETLEFREAEGLYAAGVLAGVEG----YL--ESAATGFLAGLNAARKALGLPP  366 (443)
T ss_dssp             STTCTTCCEEECCEEEEEEEECHHHHBCTTSEETTEEEEEECGGGGTBCS----HH--HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcChhhCeeeeCcEeecCceecChhHhChhceecCCCCEEECccccccHH----HH--HHHHhHHHHHHHHHHHhcCCCC
Confidence            5688999999999987  7788 6    7999999999999996555543    55  6777999999999998877654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.39  E-value=5e-11  Score=122.28  Aligned_cols=63  Identities=19%  Similarity=0.111  Sum_probs=50.4

Q ss_pred             CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          152 GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       152 g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      +..+|. .....+.+.|.+.+++.|++|+++++|++|..++  +.+ |.++      +.++.||.||+|+|.+
T Consensus       180 g~~~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~v-V~~~------g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          180 GPGLIR-GGCKAVIDELERIIMENKGKILTRKEVVEINIEE--KKV-YTRD------NEEYSFDVAISNVGVR  242 (421)
T ss_dssp             SCEEET-TCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTT--TEE-EETT------CCEEECSEEEECSCHH
T ss_pred             Ccceec-CCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEEC--CEE-EEeC------CcEEEeCEEEECCCHH
Confidence            345553 3467889999999999999999999999998765  566 5433      5689999999999964

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.37  E-value=4.9e-12  Score=137.94  Aligned_cols=80  Identities=11%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      ....++..|.+.+++.|++|+++++|++|..++  +.+.|++.+     +.++.||.||+|+|++..  .++...++.+.
T Consensus       415 ~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v~V~t~~-----G~~i~Ad~VVlAtG~~s~--~l~~~~~lpl~  485 (676)
T 3ps9_A          415 CPAELTRNVLELAQQQGLQIYYQYQLQNFSRKD--DCWLLNFAG-----DQQATHSVVVLANGHQIS--RFSQTSTLPVY  485 (676)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEEEEEETT-----SCEEEESEEEECCGGGGG--CSTTTTTCSCE
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC--CeEEEEECC-----CCEEECCEEEECCCcchh--ccccccCCcce
Confidence            467889999999999999999999999999875  668888764     567999999999998652  23333444444


Q ss_pred             cCCCceeEe
Q 011610          240 DPVPSLFTF  248 (481)
Q Consensus       240 ~~~p~l~~~  248 (481)
                      +.+..++.+
T Consensus       486 p~rGq~~~~  494 (676)
T 3ps9_A          486 SVAGQVSHI  494 (676)
T ss_dssp             EEEEEEEEE
T ss_pred             eecCEEEEE
Confidence            433333333

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.36  E-value=1.4e-12  Score=142.52  Aligned_cols=73  Identities=10%  Similarity=0.145  Sum_probs=55.6

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE-EEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE-CIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~-~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ....++..|.+.+++.|++|+++++|++|..++  +.+.|++.+     +. .+.||.||+|+|++..  .++...+..+
T Consensus       410 ~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v~V~t~~-----G~~~i~Ad~VVlAtG~~s~--~l~~~~~lpl  480 (689)
T 3pvc_A          410 CPSDLTHALMMLAQQNGMTCHYQHELQRLKRID--SQWQLTFGQ-----SQAAKHHATVILATGHRLP--EWEQTHHLPL  480 (689)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEESCCEEEEEECS--SSEEEEEC------CCCCEEESEEEECCGGGTT--CSTTTTTSCC
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC--CeEEEEeCC-----CcEEEECCEEEECCCcchh--ccccccCCcc
Confidence            457889999999999999999999999999876  558888765     44 7999999999998642  2333344444


Q ss_pred             ccC
Q 011610          239 VDP  241 (481)
Q Consensus       239 ~~~  241 (481)
                      .+.
T Consensus       481 ~p~  483 (689)
T 3pvc_A          481 SAV  483 (689)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            333

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.35  E-value=1.5e-11  Score=125.04  Aligned_cols=184  Identities=19%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhc-cCCC-CcEEEEeCCCCCCc--eEEecCCceeeccCCCcc----hhHHh----hcc
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKT-VAPK-LNVVIIEKGKPLSK--VKISGGGRCNVTNGHCAD----KMILA----GHY  115 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~-~~~g-~~V~llE~~~~g~k--~~~sG~g~~n~~~~~~~~----~~~~~----~~~  115 (481)
                      +.++||+|||||++|+++|++|++ .  | .+|+|||+..++..  ...+|.-++.........    ...+.    ...
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~--G~~~V~vlE~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   96 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNH--GITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEQLPEDL   96 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHH--CCCCEEEECSSSTTCSGGGTSCCCBCCCCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhc--CCCcEEEEeCCCCCCCcccccCceeeecCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            457899999999999999999998 5  6 89999998766531  111111111111000000    00000    000


Q ss_pred             CCCChhchh-hHHh-cCCh------HHHHHHHHhcCCcceeec----------------------CCeeeecC--CChHH
Q 011610          116 PRGHKEFRG-SFFS-LHGP------MDTMSWFSDHGVELKTED----------------------DGRVFPVS--DSSSS  163 (481)
Q Consensus       116 ~~~~~~~~~-~~l~-~~~~------~~~~~~~~~~Gi~~~~~~----------------------~g~~~p~~--~~a~~  163 (481)
                      .. ...+.. ..+. ....      ....+++...|+++..-+                      .+..+|..  .+...
T Consensus        97 ~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (405)
T 2gag_B           97 EY-DFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDH  175 (405)
T ss_dssp             TC-CCCCBCCCEEEEECSHHHHHHHHHHHHHHHTBTCCCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBBCCHHH
T ss_pred             CC-CcCEecccEEEEEcCHHHHHHHHHHHHHHHhcCCCceEeCHHHHHhhCCCCcccccccccceeEEEeCCCccCCHHH
Confidence            00 000000 0000 0011      123344555665433210                      01122211  24567


Q ss_pred             HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcccCCC
Q 011610          164 VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVP  243 (481)
Q Consensus       164 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~~~p  243 (481)
                      +...|.+.+++.|++++++++|+++..++ +..+.|++.+     + ++.||.||+|+|++.  ..+++.+|+.+ |..|
T Consensus       176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~~~~~v~~~~-----g-~~~a~~vV~a~G~~s--~~l~~~~g~~~-~~~~  245 (405)
T 2gag_B          176 VAWAFARKANEMGVDIIQNCEVTGFIKDG-EKVTGVKTTR-----G-TIHAGKVALAGAGHS--SVLAEMAGFEL-PIQS  245 (405)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEEEEEETT-----C-CEEEEEEEECCGGGH--HHHHHHHTCCC-CEEE
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEEeC-CEEEEEEeCC-----c-eEECCEEEECCchhH--HHHHHHcCCCC-Cccc
Confidence            88999999999999999999999998875 4556777764     4 799999999999875  35677778764 4444


Q ss_pred             c
Q 011610          244 S  244 (481)
Q Consensus       244 ~  244 (481)
                      .
T Consensus       246 ~  246 (405)
T 2gag_B          246 H  246 (405)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.31  E-value=8.6e-12  Score=125.48  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ...++..|.+.+++.|++++++++|++++.++  +.+.|++.+     + ++.||.||+|+|++.
T Consensus       148 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~-----g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          148 SELAIKTWIQLAKEAGCAQLFNCPVTAIRHDD--DGVTIETAD-----G-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSEEEEESS-----C-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcC--CEEEEEECC-----C-eEEcCEEEEcCCccH
Confidence            46788999999999999999999999998865  457777764     3 599999999999865

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.31  E-value=3e-12  Score=125.42  Aligned_cols=114  Identities=22%  Similarity=0.301  Sum_probs=77.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEE-EeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVI-IEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~l-lE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|++||+.|++  .|++|+| +|++.+|        |.+.....  ..      .|+..         
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~li~e~~~~g--------G~~~~~~~--~~------~~~~~---------   55 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATR--GGLKNVVMFEKGMPG--------GQITSSSE--IE------NYPGV---------   55 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH--HTCSCEEEECSSSTT--------GGGGGCSC--BC------CSTTC---------
T ss_pred             CCceEEEECCCHHHHHHHHHHHH--CCCCeEEEEeCCCCC--------ceeeeece--ec------cCCCC---------
Confidence            46899999999999999999999  6899999 9997665        44322111  00      01000         


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                                                  +.......+...+.+.+++.|++++.+ +|.++ .++..+.|.+.+..   +
T Consensus        56 ----------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~---~  102 (315)
T 3r9u_A           56 ----------------------------AQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEG---G  102 (315)
T ss_dssp             ----------------------------CSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETT---S
T ss_pred             ----------------------------CCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEec---C
Confidence                                        001134566677777888889999988 89888 43201457753332   1


Q ss_pred             ceEEEEcCeEEEccCCC
Q 011610          208 LVECIEADYLLIASGSS  224 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~  224 (481)
                       + ++.+|+||+|||+.
T Consensus       103 -~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A          103 -K-TELAKAVIVCTGSA  117 (315)
T ss_dssp             -C-EEEEEEEEECCCEE
T ss_pred             -C-EEEeCEEEEeeCCC
Confidence             3 89999999999974

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.26  E-value=5.2e-11  Score=126.88  Aligned_cols=76  Identities=18%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      .+...+...|.+.+.+.|++|+++++|+++..++ ++.++|++.+..++....++||.||+|+|.+.  ..+++.+|..
T Consensus       167 vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~-g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s--~~l~~~~g~~  242 (561)
T 3da1_A          167 TDDARLTLEIMKEAVARGAVALNYMKVESFIYDQ-GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV--DTLREKDRSK  242 (561)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCGGGH--HHHHHTTTCC
T ss_pred             EcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CeEEEEEEEEcCCCceEEEECCEEEECCCcch--HHHHHhcCCC
Confidence            3567888899999999999999999999999875 44567887653334456899999999999876  3567777754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.25  E-value=3.9e-11  Score=128.02  Aligned_cols=168  Identities=16%  Similarity=0.135  Sum_probs=94.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ++.+||+|||||++|+++|+.|++  .|++|+|||+......     .++....+   .....+...+.     +...+.
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~--~G~~V~VlEr~~~~~~-----~~r~~~l~---~~s~~~l~~lG-----l~~~l~  111 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRA--GGVGALVLEKLVEPVG-----HDRAGALH---IRTVETLDLRG-----LLDRFL  111 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHH--TTCCEEEEBSCSSCCC-----SSSCCCBC---HHHHHHHHTTT-----CHHHHT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCCC-----CceEEEEC---HHHHHHHHHcC-----ChHHHH
Confidence            457899999999999999999999  7999999996533210     11110010   01111111111     000000


Q ss_pred             hcCChHHHHHHHHhc---CCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          128 SLHGPMDTMSWFSDH---GVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~---Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                       ..........+...   .+..........+........+...|.+.+++.|++|+++++|++++.++  +.+.|++.. 
T Consensus       112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~--~~v~v~~~~-  187 (570)
T 3fmw_A          112 -EGTQVAKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDA--EAVEVTVAG-  187 (570)
T ss_dssp             -TSCCBCSBCCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCS--SCEEEEEEE-
T ss_pred             -hcCcccCCceeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CeEEEEEEe-
Confidence             00000000000000   00000000111122234567888999999988899999999999998875  567777632 


Q ss_pred             ccCce-EEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          205 TMNLV-ECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       205 ~~~~~-~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                       .+ + .+++||.||.|+|+++   .+.+.+|+...
T Consensus       188 -~~-G~~~~~a~~vV~ADG~~S---~vR~~lGi~~~  218 (570)
T 3fmw_A          188 -PS-GPYPVRARYGVGCDGGRS---TVRRLAADRFP  218 (570)
T ss_dssp             -TT-EEEEEEESEEEECSCSSC---HHHHHTTCCCC
T ss_pred             -CC-CcEEEEeCEEEEcCCCCc---hHHHHcCCCCc
Confidence             11 4 6899999999999876   45667777643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.25  E-value=1.1e-10  Score=122.68  Aligned_cols=167  Identities=17%  Similarity=0.169  Sum_probs=96.5

Q ss_pred             CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610           45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      +..++++||+||||||+|+++|+.|++  .|.+|+|||+. .+..      .+++...+.   ...++...+.-.. .+.
T Consensus         6 ~~~~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~------~~r~~~l~~---~~~~~l~~lGl~~-~~~   73 (500)
T 2qa1_A            6 HHHRSDAAVIVVGAGPAGMMLAGELRL--AGVEVVVLERLVERTG------ESRGLGFTA---RTMEVFDQRGILP-RFG   73 (500)
T ss_dssp             --CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCCC-CC------CCCSEEECH---HHHHHHHTTTCGG-GGC
T ss_pred             CCccCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCC------CCCcceECH---HHHHHHHHCCCHH-HHH
Confidence            456678999999999999999999999  79999999965 3321      122211111   0111222111000 000


Q ss_pred             hhHHhcCChHHHHHHHHhcCCcceeecCCeeee--cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEE
Q 011610          124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP--VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKV  201 (481)
Q Consensus       124 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p--~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~  201 (481)
                      ..  ......   .+   .++.+........+|  .......+.+.|.+.+++.|++|+++++|++++.++  +.+.|++
T Consensus        74 ~~--~~~~~~---~~---~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~  143 (500)
T 2qa1_A           74 EV--ETSTQG---HF---GGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDG--AGVTVEV  143 (500)
T ss_dssp             SC--CBCCEE---EE---TTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEET--TEEEEEE
T ss_pred             hc--cccccc---cc---cceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcC--CeEEEEE
Confidence            00  000000   00   011011000000011  112346778889999999999999999999999875  5677777


Q ss_pred             eecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          202 EKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       202 ~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+.  ++..+++||+||.|+|+.+   .+.+.+|+..
T Consensus       144 ~~~--~g~~~~~a~~vVgADG~~S---~VR~~lg~~~  175 (500)
T 2qa1_A          144 RGP--EGKHTLRAAYLVGCDGGRS---SVRKAAGFDF  175 (500)
T ss_dssp             EET--TEEEEEEESEEEECCCTTC---HHHHHTTCCC
T ss_pred             EcC--CCCEEEEeCEEEECCCcch---HHHHHcCCCc
Confidence            651  1124799999999999876   3556677654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.24  E-value=8.9e-11  Score=120.12  Aligned_cols=155  Identities=21%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +.+||+|||||++|+++|+.|++  .|.+|+|+|+....+.    +.|.+  .....   ..+.               .
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~--~G~~V~v~E~~~~~~~----~~g~~--~~~~~---~~~l---------------~   57 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQKFPRF----VIGES--LLPRC---MEHL---------------D   57 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSSCC----CSCCB--CCGGG---HHHH---------------H
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCC----cccCc--ccHhH---HHHH---------------H
Confidence            35899999999999999999999  7999999997654320    01111  00000   0111               1


Q ss_pred             cCChHHHHHHHHhcCCccee----ecCC--------------eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEe
Q 011610          129 LHGPMDTMSWFSDHGVELKT----EDDG--------------RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASS  190 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~----~~~g--------------~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~  190 (481)
                      ..+..   +.+...+.....    ....              ..+....+...+...|.+.+++.|++|+++++|+++..
T Consensus        58 ~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~  134 (421)
T 3nix_A           58 EAGFL---DAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKF  134 (421)
T ss_dssp             HTTCH---HHHHHTTCEEECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEE
T ss_pred             HcCCh---HHHHHcCCcccCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE
Confidence            11111   111222211100    0000              00111235678889999999989999999999999988


Q ss_pred             cCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          191 DNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       191 ~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++  +.+.+.+.. .++...+++||.||+|+|..+   .+.+.+|.+.
T Consensus       135 ~~--~~~~v~v~~-~~g~~~~~~a~~vV~A~G~~s---~l~~~~g~~~  176 (421)
T 3nix_A          135 FG--TDSVTTIED-INGNKREIEARFIIDASGYGR---VIPRMFGLDK  176 (421)
T ss_dssp             ET--TEEEEEEEE-TTSCEEEEEEEEEEECCGGGC---HHHHHTTCEE
T ss_pred             eC--CEEEEEEEc-CCCCEEEEEcCEEEECCCCch---hhHHhcCCCC
Confidence            75  444444321 112223799999999999765   4567778764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.24  E-value=1.4e-10  Score=121.81  Aligned_cols=166  Identities=17%  Similarity=0.157  Sum_probs=95.8

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchh
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRG  124 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~  124 (481)
                      ..++++||+||||||+|+++|+.|++  .|.+|+|||+. .+..      .+++...+.   ...++...+.-.. .+..
T Consensus         8 ~~~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~------~~r~~~l~~---~~~~~l~~lGl~~-~~~~   75 (499)
T 2qa2_A            8 HHRSDASVIVVGAGPAGLMLAGELRL--GGVDVMVLEQLPQRTG------ESRGLGFTA---RTMEVFDQRGILP-AFGP   75 (499)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCSSCCC------CCCSEEECH---HHHHHHHHTTCGG-GGCS
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCC------CCceeEECH---HHHHHHHHCCCHH-HHHh
Confidence            44567999999999999999999999  79999999965 3321      122211111   1111222111000 0000


Q ss_pred             hHHhcCChHHHHHHHHhcCCcceeec--CCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610          125 SFFSLHGPMDTMSWFSDHGVELKTED--DGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~Gi~~~~~~--~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                      .  .....   ..+   .++.+....  ....+........+...|.+.+.+.|++|+++++|++++.++  +.+.|++.
T Consensus        76 ~--~~~~~---~~~---~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~  145 (499)
T 2qa2_A           76 V--ETSTQ---GHF---GGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEG--DHVVVEVE  145 (499)
T ss_dssp             C--CEESE---EEE---TTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECS--SCEEEEEE
T ss_pred             c--ccccc---cee---cceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEE
Confidence            0  00000   000   011111000  011111112356788899999999999999999999999875  56777776


Q ss_pred             ecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          203 KRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      +. . +..+++||+||.|+|+.+   .+.+.+|+..
T Consensus       146 ~~-~-g~~~~~a~~vVgADG~~S---~VR~~lg~~~  176 (499)
T 2qa2_A          146 GP-D-GPRSLTTRYVVGCDGGRS---TVRKAAGFDF  176 (499)
T ss_dssp             CS-S-CEEEEEEEEEEECCCTTC---HHHHHTTCCC
T ss_pred             cC-C-CcEEEEeCEEEEccCccc---HHHHHcCCCC
Confidence            41 1 124799999999999876   3556677654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.23  E-value=3.6e-12  Score=133.89  Aligned_cols=177  Identities=20%  Similarity=0.217  Sum_probs=99.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ...+||+|||||++|+++|+.|++  .|.+|+|||+....        ++|+..+..  +  .           .. ..+
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liEk~~~~--------g~~~~~~~~--~--~-----------~~-~~l  143 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELAL--LGARVVLVEKRIKF--------SRHNVLHLW--P--F-----------TI-HDL  143 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCSSC--------CCCCEEECC--H--H-----------HH-HHH
T ss_pred             cCCCCEEEECccHHHHHHHHHHHH--CCCeEEEEEecccc--------CCCCcccCC--h--h-----------HH-HHH
Confidence            356899999999999999999999  79999999976322        233333321  1  0           00 001


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEEEeeccc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLKVEKRTM  206 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~~~~~~~  206 (481)
                      ..++..+   +   .+ .+.... -..+    ....+.+.|.+.+++.|++|+++++|+++..++ +++.+.|++.+..+
T Consensus       144 ~~~g~~~---~---~~-~~~~~~-~~~~----~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~  211 (497)
T 2bry_A          144 RALGAKK---F---YG-RFCTGT-LDHI----SIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPP  211 (497)
T ss_dssp             HTTTHHH---H---CT-TTTCTT-CCEE----EHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCC
T ss_pred             HHcCCcc---c---cc-cccccc-cccC----CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCC
Confidence            1111110   0   00 000000 0111    246778889999999999999999999998641 12457777632001


Q ss_pred             CceEEEEcCeEEEccCCChhH--HHHHHHcCCCcccCCCceeEe-eeCccccccccCce
Q 011610          207 NLVECIEADYLLIASGSSQQG--HRLAAQLGHSIVDPVPSLFTF-KIADSQLTELSGVS  262 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g~g--~~la~~~G~~i~~~~p~l~~~-~~~~~~~~~l~G~~  262 (481)
                      +...++.||.||+|+|+.+..  +...+..|+.+.+..+.++++ ...+.+.+.+.|+.
T Consensus       212 g~~~~i~ad~VV~A~G~~S~~r~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~G~~  270 (497)
T 2bry_A          212 AQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEETQVPEISGVA  270 (497)
T ss_dssp             HHHHTCCBSEEEECCCTTCCCTTCEEEEEECSCCEEEEEEEECCCCHHHHTSCCBCC--
T ss_pred             CCEEEEEcCEEEECCCCCcccccccchhhcCceeEeeeeeeeeeccccccchhhcCceE
Confidence            111469999999999976522  111122344444444555544 23333344455553

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.22  E-value=1.8e-10  Score=121.96  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC----eEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR----KFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~----~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      ....+...|.+.+++.|++|+++++|++++.++  +    .+.+++.+  .++..+++||.||.|+|+++   .+.+.+|
T Consensus       118 ~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~~~~~v~v~~~~--~~~~~~i~a~~vV~AdG~~S---~vR~~lg  190 (535)
T 3ihg_A          118 SQDKLEPILLAQARKHGGAIRFGTRLLSFRQHD--DDAGAGVTARLAG--PDGEYDLRAGYLVGADGNRS---LVRESLG  190 (535)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSCEEEEEEEEC--GGGCSEEEEEEEE--TTEEEEEEEEEEEECCCTTC---HHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC--CCccccEEEEEEc--CCCeEEEEeCEEEECCCCcc---hHHHHcC
Confidence            467788899999999999999999999999875  5    67777764  11137899999999999876   5677788


Q ss_pred             CCc
Q 011610          236 HSI  238 (481)
Q Consensus       236 ~~i  238 (481)
                      +..
T Consensus       191 i~~  193 (535)
T 3ihg_A          191 IGR  193 (535)
T ss_dssp             CCE
T ss_pred             CCc
Confidence            764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.22  E-value=8.1e-11  Score=114.42  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=92.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      .++||+|||||++|+++|+.|++  . |.+|+|||+. .++.        .+.... ....            ....   
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~--~~G~~V~viEk~~~~gg--------~~~~~~-~~~~------------~~~~---   91 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISK--NPNVQVAIIEQSVSPGG--------GAWLGG-QLFS------------AMIV---   91 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT--STTSCEEEEESSSSCCT--------TTTCCS-TTCC------------CEEE---
T ss_pred             cccCEEEECccHHHHHHHHHHHH--cCCCeEEEEECCCCCCC--------ceecCC-cchH------------HHHc---
Confidence            35899999999999999999998  5 8999999965 4442        111100 0000            0010   


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeec-
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKR-  204 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~-  204 (481)
                       .    ....+|+++.|+++...  +.+++ ......+...|.+.+.+ .|++++++++|+++..++ +....|.+... 
T Consensus        92 -~----~~~~~~l~~~G~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~-~~v~gv~~~~~~  162 (284)
T 1rp0_A           92 -R----KPAHLFLDEIGVAYDEQ--DTYVV-VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWAL  162 (284)
T ss_dssp             -E----TTTHHHHHHHTCCCEEC--SSEEE-ESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEET-TEEEEEEEEEHH
T ss_pred             -C----cHHHHHHHHcCCCcccC--CCEEE-ecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC-CeEEEEEEeccc
Confidence             0    01235677778876543  22332 22456777888888866 699999999999998765 33345665410 


Q ss_pred             --------ccCceEEEEcCeEEEccCCCh
Q 011610          205 --------TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       205 --------~~~~~~~i~ad~VIlAtG~~g  225 (481)
                              ..+....+.||.||+|+|+.+
T Consensus       163 ~~~~~~~g~~g~~~~i~ad~VV~AtG~~s  191 (284)
T 1rp0_A          163 VAQNHHTQSCMDPNVMEAKIVVSSCGHDG  191 (284)
T ss_dssp             HHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cccccCccccCceEEEECCEEEECCCCch
Confidence                    001236799999999999754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.22  E-value=7.4e-11  Score=126.24  Aligned_cols=153  Identities=20%  Similarity=0.250  Sum_probs=94.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+||+|||||++|+++|+.|++  .|.+|+|||+...+..    +.|..  ..   .....+.               ..
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar--~G~~V~LiEr~~~~~~----~~G~~--l~---p~~~~~l---------------~~   76 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAFPRY----RVGES--LL---PGTMSIL---------------NR   76 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSSCC----CCCCB--CC---HHHHHHH---------------HH
T ss_pred             CCCEEEECcCHHHHHHHHHHHc--CCCCEEEEcCCCCCCC----ceeee--EC---HHHHHHH---------------HH
Confidence            5899999999999999999999  7999999997654420    00100  00   0000111               11


Q ss_pred             CChHHHHHHHHhcCCcce------eecC----------------CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEE
Q 011610          130 HGPMDTMSWFSDHGVELK------TEDD----------------GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTT  187 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~------~~~~----------------g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~  187 (481)
                      .+..+   .+...+....      ....                ...+....+...+...|.+.+++.|++++++++|++
T Consensus        77 lGl~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~  153 (591)
T 3i3l_A           77 LGLQE---KIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTD  153 (591)
T ss_dssp             TTCHH---HHHHHCCEEECEEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred             cCCcH---HHHhcCCcccCCcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence            11111   1111111000      0000                000111235677888999999999999999999999


Q ss_pred             EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      +..++ ++.+.|++.+  .+...+++||.||.|+|..+   .+.+.+|..
T Consensus       154 v~~~~-g~~~~V~~~~--~G~~~~i~AdlVV~AdG~~S---~lr~~lg~~  197 (591)
T 3i3l_A          154 VDLSD-PDRVVLTVRR--GGESVTVESDFVIDAGGSGG---PISRKLGVR  197 (591)
T ss_dssp             EECCS-TTCEEEEEEE--TTEEEEEEESEEEECCGGGC---HHHHHHTCE
T ss_pred             EEEcC-CCEEEEEEec--CCceEEEEcCEEEECCCCcc---hhHHHcCCC
Confidence            98764 4678888763  12126899999999999865   355666664

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.21  E-value=1.6e-10  Score=128.93  Aligned_cols=78  Identities=19%  Similarity=0.298  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      ++..+...|.+.+++.|++|+++++|++|..++ +..+.|++.+     + +++||.||+|+|++.  ..+++.+|+++ 
T Consensus       149 ~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~-~~v~~V~t~~-----G-~i~Ad~VV~AaG~~s--~~l~~~~g~~~-  218 (830)
T 1pj5_A          149 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTAD-----G-VIPADIVVSCAGFWG--AKIGAMIGMAV-  218 (830)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETT-----E-EEECSEEEECCGGGH--HHHHHTTTCCC-
T ss_pred             cHHHHHHHHHHHHHHcCCEEECCceEEEEEEeC-CEEEEEEECC-----c-EEECCEEEECCccch--HHHHHHhCCCc-
Confidence            567889999999999999999999999998765 3344677764     3 799999999999876  56777788764 


Q ss_pred             cCCCceeE
Q 011610          240 DPVPSLFT  247 (481)
Q Consensus       240 ~~~p~l~~  247 (481)
                      |+.|...+
T Consensus       219 pl~p~~g~  226 (830)
T 1pj5_A          219 PLLPLAHQ  226 (830)
T ss_dssp             CCEEEEEE
T ss_pred             cceeceeE
Confidence            55554433

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.18  E-value=2.4e-11  Score=125.75  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=55.1

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEe---------------cCCCCeEEEEEeecccCceEEE--EcCeEEEccC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASS---------------DNAGRKFLLKVEKRTMNLVECI--EADYLLIASG  222 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~---------------~~~~~~~~V~~~~~~~~~~~~i--~ad~VIlAtG  222 (481)
                      +...+...|.+.+++.|++|+++++|++|..               ++ ++.+.|++.+     + ++  .||.||+|+|
T Consensus       179 ~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~-~~v~~V~t~~-----g-~i~~~Ad~VV~AtG  251 (448)
T 3axb_A          179 DAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE-ARASAAVLSD-----G-TRVEVGEKLVVAAG  251 (448)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC-EEEEEEEETT-----S-CEEEEEEEEEECCG
T ss_pred             cHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC-CceEEEEeCC-----C-EEeecCCEEEECCC
Confidence            5678899999999999999999999999987               43 2335677664     4 68  9999999999


Q ss_pred             CChhHHHHHHHcCCC
Q 011610          223 SSQQGHRLAAQLGHS  237 (481)
Q Consensus       223 ~~g~g~~la~~~G~~  237 (481)
                      ++.  ..++..+|..
T Consensus       252 ~~s--~~l~~~~g~~  264 (448)
T 3axb_A          252 VWS--NRLLNPLGID  264 (448)
T ss_dssp             GGH--HHHHGGGTCC
T ss_pred             cCH--HHHHHHcCCC
Confidence            875  3577777765

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.18  E-value=1.4e-10  Score=114.98  Aligned_cols=145  Identities=19%  Similarity=0.250  Sum_probs=95.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ..+||+|||||++|+++|+.|++..+|++|+|||+. .++        +.|. .+ ..        .+.   ....    
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G--------Gg~~-~~-g~--------~~~---~~~~----  132 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG--------GGAW-LG-GQ--------LFS---AMVM----  132 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC--------TTTT-CC-BT--------TCC---CEEE----
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC--------Cccc-cC-Cc--------cch---hhhc----
Confidence            468999999999999999999983238999999976 444        2221 11 00        000   0010    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCC------------
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAG------------  194 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~------------  194 (481)
                       .   .+...|+++.|+++...  +.++ ...+..++.+.|.+.+.+ .|+++++++.|.++..++ +            
T Consensus       133 -~---~~~~~~L~~~Gv~~~~~--G~~~-~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~-d~~~~~~~~~~g~  204 (344)
T 3jsk_A          133 -R---KPADVFLDEVGVPYEDE--GDYV-VVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRK-HHAESSSSSDDGE  204 (344)
T ss_dssp             -E---TTTHHHHHHHTCCCEEC--SSEE-EESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEE-C------------
T ss_pred             -c---hHHHHHHHHcCCccccc--CCeE-EEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-Ccccccccccccc
Confidence             1   12356778888877543  3333 234567888999999888 599999999999998754 2            


Q ss_pred             -------CeEEEEEeec---ccC------ceEEEEcCeEEEccCCChh
Q 011610          195 -------RKFLLKVEKR---TMN------LVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       195 -------~~~~V~~~~~---~~~------~~~~i~ad~VIlAtG~~g~  226 (481)
                             ...+|.+...   ..+      ...+|+|+.||+|||..+.
T Consensus       205 ~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~  252 (344)
T 3jsk_A          205 AEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGP  252 (344)
T ss_dssp             ----CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSS
T ss_pred             cccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCch
Confidence                   1234544310   011      2368999999999998754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.18  E-value=1.6e-10  Score=121.78  Aligned_cols=147  Identities=19%  Similarity=0.206  Sum_probs=87.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .++||+|||||++|+++|+.|++  .|++|+|||+......    +.|..      ..+. ..            ...+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liE~~~~~~~----~~g~~------~~~~-~~------------~~~l~   60 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAM--RGHRVLLLEREAFPRH----QIGES------LLPA-TV------------HGICA   60 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSSCC----CSCCB------CCHH-HH------------TTHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh--CCCCEEEEccCCCCCC----CCCcc------cCcc-hH------------HHHHH
Confidence            45899999999999999999999  7999999997654320    00100      0000 00            00001


Q ss_pred             cCChHHHHHHHHhcCCccee---------------e-----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEE
Q 011610          129 LHGPMDTMSWFSDHGVELKT---------------E-----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTA  188 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~---------------~-----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i  188 (481)
                      ..+..   +.+...+.....               .     .....+........+...|.+.+++.|++|+++++|+++
T Consensus        61 ~lgl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v  137 (512)
T 3e1t_A           61 MLGLT---DEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDV  137 (512)
T ss_dssp             HTTCH---HHHHTTTCCEECEEEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEE
T ss_pred             HhCcH---HHHHHcCCccccCceEEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEE
Confidence            11100   011111111100               0     000011112456788899999999999999999999999


Q ss_pred             EecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          189 SSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       189 ~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..++ +....|++.. .++...+++||.||.|+|..+
T Consensus       138 ~~~~-~~v~gv~~~~-~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          138 LFEG-ERAVGVRYRN-TEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             EEET-TEEEEEEEEC-SSSCEEEEEEEEEEECCCTTC
T ss_pred             EEEC-CEEEEEEEEe-CCCCEEEEEcCEEEECCCcch
Confidence            9875 3333455542 112225899999999999865

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.18  E-value=1.2e-11  Score=126.20  Aligned_cols=146  Identities=21%  Similarity=0.223  Sum_probs=84.6

Q ss_pred             CCCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610           44 LTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        44 ~~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      ++.....+||+|||||++|+++|+.|++  .|++|+|||+....+.   .|.+ ..+..    ........+        
T Consensus        17 ~~~~~~~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~E~~~~~~~---~~~~-~~l~~----~~~~~l~~l--------   78 (407)
T 3rp8_A           17 NLYFQGHMKAIVIGAGIGGLSAAVALKQ--SGIDCDVYEAVKEIKP---VGAA-ISVWP----NGVKCMAHL--------   78 (407)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSCC-------CE-EEECH----HHHHHHHHT--------
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCC---cCee-EEECH----HHHHHHHHC--------
Confidence            3445567999999999999999999999  7999999997633210   0000 11110    000111111        


Q ss_pred             hhHHhcCChHHHHHHHHhcCCcc-----eeecCCe---eee------------cCCChHHHHHHHHHHHHhCCCEEEcCc
Q 011610          124 GSFFSLHGPMDTMSWFSDHGVEL-----KTEDDGR---VFP------------VSDSSSSVIDCLLTEAKHRGVVLQTGK  183 (481)
Q Consensus       124 ~~~l~~~~~~~~~~~~~~~Gi~~-----~~~~~g~---~~p------------~~~~a~~~~~~l~~~~~~~Gv~i~~~~  183 (481)
                             +..+   .+...+.+.     .....+.   .++            .......+.+.|.+.+.+  ++|++++
T Consensus        79 -------g~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~  146 (407)
T 3rp8_A           79 -------GMGD---IMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGK  146 (407)
T ss_dssp             -------TCHH---HHHHHSCCCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESC
T ss_pred             -------CCHH---HHHhhcCCCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECC
Confidence                   1000   001111100     0000010   000            011346777888888876  8999999


Q ss_pred             eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      +|++++.++  +.+.|++.+     +.+++||.||.|+|.++.
T Consensus       147 ~v~~i~~~~--~~v~v~~~~-----g~~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          147 RVTRCEEDA--DGVTVWFTD-----GSSASGDLLIAADGSHSA  182 (407)
T ss_dssp             CEEEEEEET--TEEEEEETT-----SCEEEESEEEECCCTTCS
T ss_pred             EEEEEEecC--CcEEEEEcC-----CCEEeeCEEEECCCcChH
Confidence            999999875  678888776     568999999999998764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.16  E-value=1e-10  Score=114.63  Aligned_cols=113  Identities=15%  Similarity=0.156  Sum_probs=71.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++|||+||||||||++||+.|++  .|++|+|+|++.++        |.+  +...  +      .|...         .
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar--~g~~v~lie~~~~g--------g~~--~~~~--~------~~~~~---------~   55 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGR--ARKQIALFDNNTNR--------NRV--TQNS--H------GFITR---------D   55 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCG--------GGG--SSCB--C------CSTTC---------T
T ss_pred             CCcCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCC--------Cee--eeec--C------CccCC---------C
Confidence            46899999999999999999999  79999999987665        221  1000  0      01000         0


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                      ...                             ...+.+.+.+.+.+.+...+.+..+..+...+ ++.+.|.+.+     
T Consensus        56 ~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~-----  100 (304)
T 4fk1_A           56 GIK-----------------------------PEEFKEIGLNEVMKYPSVHYYEKTVVMITKQS-TGLFEIVTKD-----  100 (304)
T ss_dssp             TBC-----------------------------HHHHHHHHHHHHTTSTTEEEEECCEEEEEECT-TSCEEEEETT-----
T ss_pred             CCC-----------------------------HHHHHHHHHHHHHhcCCEEEEeeEEEEeeecC-CCcEEEEECC-----
Confidence            001                             12222333334444444444455666666554 4667888776     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +.++.+|+||+|||+.+
T Consensus       101 g~~~~a~~liiATGs~p  117 (304)
T 4fk1_A          101 HTKYLAERVLLATGMQE  117 (304)
T ss_dssp             CCEEEEEEEEECCCCEE
T ss_pred             CCEEEeCEEEEccCCcc
Confidence            67899999999999754

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.16  E-value=3e-10  Score=113.14  Aligned_cols=148  Identities=16%  Similarity=0.213  Sum_probs=84.3

Q ss_pred             CeEEEECCchHHHHHHHHHhc-cCCCCcEEEEeCC-CCCCceEEe---cCCceeeccCCCcchhHHhhccCCCChhchhh
Q 011610           51 ELLVVVGGGAAGVYGAIRAKT-VAPKLNVVIIEKG-KPLSKVKIS---GGGRCNVTNGHCADKMILAGHYPRGHKEFRGS  125 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~-~~~g~~V~llE~~-~~g~k~~~s---G~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (481)
                      +||+|||||++|+++|+.|++ ...|++|+|+|+. .+|+.....   ++..+.+...         ..|......+.. 
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g---------~~~~~~~~~~~~-   71 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLG---------AQYITCTPHYAK-   71 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESS---------CCCEEECSSHHH-
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecC---------CceEEcCchHHH-
Confidence            699999999999999999998 2247999999965 444221110   0000111000         001000000000 


Q ss_pred             HHhcCChHHHHHHHHhcCCccee---------ecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCe
Q 011610          126 FFSLHGPMDTMSWFSDHGVELKT---------EDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK  196 (481)
Q Consensus       126 ~l~~~~~~~~~~~~~~~Gi~~~~---------~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~  196 (481)
                         .+  .+..+.+...|+....         .+....|........+.+.|.+.+   |++|+++++|++|..++  +.
T Consensus        72 ---~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~--~~  141 (342)
T 3qj4_A           72 ---KH--QRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLRD--DK  141 (342)
T ss_dssp             ---HT--HHHHHHHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEECS--SS
T ss_pred             ---HH--HHHHHHHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEcC--CE
Confidence               00  1122222223321110         011223434455566777766554   89999999999999875  66


Q ss_pred             EEEEEeecccCceEEEEcCeEEEccCC
Q 011610          197 FLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       197 ~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      |.|++.+     +..+.+|.||+|+..
T Consensus       142 ~~v~~~~-----g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          142 WEVSKQT-----GSPEQFDLIVLTMPV  163 (342)
T ss_dssp             EEEEESS-----SCCEEESEEEECSCH
T ss_pred             EEEEECC-----CCEEEcCEEEECCCH
Confidence            8888875     556899999999973

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.15  E-value=2.3e-10  Score=112.12  Aligned_cols=112  Identities=17%  Similarity=0.235  Sum_probs=80.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +++||+|||||++|+++|+.|++  .|++|+|+|+. +|        |.+.....  .      ..++.    +      
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~g--------g~~~~~~~--~------~~~~~----~------   64 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSAR--YMLKTLVIGET-PG--------GQLTEAGI--V------DDYLG----L------   64 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-TT--------GGGGGCCE--E------CCSTT----S------
T ss_pred             CccCEEEECccHHHHHHHHHHHH--CCCcEEEEecc-CC--------Ceeccccc--c------cccCC----C------
Confidence            46899999999999999999999  78999999987 55        33322100  0      00000    0      


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                        .                     .     .....+.+.+.+.+++.|+++++ ++|.++..++  +.+.|.+.+     
T Consensus        65 --~---------------------~-----~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~~-----  108 (323)
T 3f8d_A           65 --I---------------------E-----IQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRG--DEFVVKTKR-----  108 (323)
T ss_dssp             --T---------------------T-----EEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC----CEEEEESS-----
T ss_pred             --C---------------------C-----CCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecC--CEEEEEECC-----
Confidence              0                     0     11345667777788888999999 8999998764  668888775     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +..+.+|+||+|||+.+
T Consensus       109 g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A          109 KGEFKADSVILGIGVKR  125 (323)
T ss_dssp             SCEEEEEEEEECCCCEE
T ss_pred             CCEEEcCEEEECcCCCC
Confidence            57899999999999753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.14  E-value=5.5e-11  Score=120.76  Aligned_cols=111  Identities=21%  Similarity=0.226  Sum_probs=70.5

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhh
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS  125 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (481)
                      +..++.+|+|||||+||++||..|+.  ++.+|+|||+.....      ..++.                      +. .
T Consensus         5 ~~~~~~~~vIvGgG~AGl~aA~~L~~--~~~~itlie~~~~~~------y~~~~----------------------l~-~   53 (385)
T 3klj_A            5 HHHKSTKILILGAGPAGFSAAKAALG--KCDDITMINSEKYLP------YYRPR----------------------LN-E   53 (385)
T ss_dssp             ---CBCSEEEECCSHHHHHHHHHHTT--TCSCEEEECSSSSCC------BCGGG----------------------HH-H
T ss_pred             cccCCCCEEEEcCcHHHHHHHHHHhC--CCCEEEEEECCCCCC------cccCh----------------------hh-H
Confidence            34467899999999999999999965  789999999653210      00110                      00 0


Q ss_pred             HHh-cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          126 FFS-LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       126 ~l~-~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                      .+. ....+                   .++          ....+.+++.|++++++++|++|..++  +  .|++++ 
T Consensus        54 ~l~g~~~~~-------------------~l~----------~~~~~~~~~~~i~~~~~~~V~~id~~~--~--~v~~~~-   99 (385)
T 3klj_A           54 IIAKNKSID-------------------DIL----------IKKNDWYEKNNIKVITSEFATSIDPNN--K--LVTLKS-   99 (385)
T ss_dssp             HHHSCCCGG-------------------GTB----------SSCHHHHHHTTCEEECSCCEEEEETTT--T--EEEETT-
T ss_pred             HHcCCCCHH-------------------Hcc----------CCCHHHHHHCCCEEEeCCEEEEEECCC--C--EEEECC-
Confidence            000 00000                   000          001122346799999999999998654  3  466665 


Q ss_pred             ccCceEEEEcCeEEEccCCCh
Q 011610          205 TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g  225 (481)
                          +.++.+|+||+|||+.+
T Consensus       100 ----g~~~~yd~lvlAtG~~p  116 (385)
T 3klj_A          100 ----GEKIKYEKLIIASGSIA  116 (385)
T ss_dssp             ----SCEEECSEEEECCCEEE
T ss_pred             ----CCEEECCEEEEecCCCc
Confidence                67899999999999754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.14  E-value=4.8e-10  Score=114.01  Aligned_cols=152  Identities=14%  Similarity=0.155  Sum_probs=92.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .++||+|||||++|+++|+.|++  .|.+|+|+|+....+.   .+.+ ..+..    .......               
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~--~G~~V~viE~~~~~~~---~~~~-~~l~~----~~~~~l~---------------   59 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGR--QGHRVVVVEQARRERA---INGA-DLLKP----AGIRVVE---------------   59 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCCC------CCC-CEECH----HHHHHHH---------------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCCc---cCce-eeECc----hHHHHHH---------------
Confidence            35899999999999999999999  7999999996532210   0001 00000    0001111               


Q ss_pred             cCChHHHHHHHHhcCCcce----eecCCe---eee----------cCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEe
Q 011610          129 LHGPMDTMSWFSDHGVELK----TEDDGR---VFP----------VSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASS  190 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~----~~~~g~---~~p----------~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~  190 (481)
                      ..+..+   -+...+....    ....+.   .++          .......+.+.|.+.+++. |++|+++++|++++.
T Consensus        60 ~~g~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~  136 (399)
T 2x3n_A           60 AAGLLA---EVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQR  136 (399)
T ss_dssp             HTTCHH---HHHHTTCEEECEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEE
T ss_pred             HcCcHH---HHHHhCCCcceeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEE
Confidence            111101   0111111100    000110   011          1234568888999999988 999999999999988


Q ss_pred             cCCCCeE--EEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          191 DNAGRKF--LLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       191 ~~~~~~~--~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++  +.+  .|++.+     +.+++||.||.|+|.++.   +.+.+|...
T Consensus       137 ~~--~~v~g~v~~~~-----g~~~~ad~vV~AdG~~s~---vr~~lg~~~  176 (399)
T 2x3n_A          137 DE--RHAIDQVRLND-----GRVLRPRVVVGADGIASY---VRRRLLDID  176 (399)
T ss_dssp             CT--TSCEEEEEETT-----SCEEEEEEEEECCCTTCH---HHHHTSCCC
T ss_pred             cC--CceEEEEEECC-----CCEEECCEEEECCCCChH---HHHHhCCCc
Confidence            75  455  777765     558999999999998763   455677654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.14  E-value=3e-10  Score=119.43  Aligned_cols=73  Identities=14%  Similarity=0.112  Sum_probs=55.5

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHH-cCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQ-LGH  236 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~-~G~  236 (481)
                      +...++..|.+.+.+.|++++++++|+++..++  +.+.|++.+..++...+++||.||+|+|.+..  .++.. ++.
T Consensus       147 ~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~--~l~~~~l~~  220 (501)
T 2qcu_A          147 DDARLVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK--QFFDDGMHL  220 (501)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH--HHHHHHTCC
T ss_pred             cHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH--HHHHHhccC
Confidence            467788999999999999999999999998864  67788775311222247999999999998763  45554 553

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.12  E-value=2.3e-10  Score=112.01  Aligned_cols=113  Identities=25%  Similarity=0.378  Sum_probs=80.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+|||||++|+++|+.|++  .|. +|+|+|++.+|        |.|.....  ..      .+.            
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~--~g~~~v~lie~~~~g--------g~~~~~~~--~~------~~~------------   50 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATR--GGVKNAVLFEKGMPG--------GQITGSSE--IE------NYP------------   50 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCSSEEEECSSSTT--------CGGGGCSC--BC------CST------------
T ss_pred             CceEEEECccHHHHHHHHHHHH--CCCCcEEEEcCCCCC--------cccccccc--cc------cCC------------
Confidence            3799999999999999999999  789 99999987555        44421110  00      000            


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                    +           +|.......+.+.+.+.+++.|++++. ++|.++..++  +.+.|.+.+     
T Consensus        51 --------------~-----------~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~~-----   97 (311)
T 2q0l_A           51 --------------G-----------VKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKD--SHFVILAED-----   97 (311)
T ss_dssp             --------------T-----------CCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEET--TEEEEEETT-----
T ss_pred             --------------C-----------CcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcC--CEEEEEEcC-----
Confidence                          0           000113355667777778888999988 7999998765  567777654     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +..+.+|+||+|||+.+
T Consensus        98 g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           98 GKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             SCEEEEEEEEECCCEEE
T ss_pred             CCEEECCEEEECCCCCC
Confidence            56799999999999754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.12  E-value=8.9e-10  Score=117.59  Aligned_cols=75  Identities=12%  Similarity=0.035  Sum_probs=55.8

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      ....++..+.+.+.+.|++|+++++|+++..++ +..+.|++.+..++.+.+++||.||+|+|.+.  ..+++..|..
T Consensus       186 ~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~-~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws--~~l~~~~g~~  260 (571)
T 2rgh_A          186 NDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG-DQIVGVKARDLLTDEVIEIKAKLVINTSGPWV--DKVRNLNFTR  260 (571)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEEETTTCCEEEEEBSCEEECCGGGH--HHHHTTCCSS
T ss_pred             chHHHHHHHHHHHHHcCCeEEeccEEEEEEEeC-CEEEEEEEEEcCCCCEEEEEcCEEEECCChhH--HHHHHhhccC
Confidence            456777888889999999999999999999875 44466776532123345799999999999875  3455555643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.11  E-value=9.5e-11  Score=119.77  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEE---------EEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHH
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVT---------TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRL  230 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~---------~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~l  230 (481)
                      +...+...|.+.+++.|++++++++|+         ++..++  +.+.|++.+      ..+.||.||+|+|++.  ..+
T Consensus       170 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~--~~v~v~~~~------g~i~a~~VV~A~G~~s--~~l  239 (405)
T 3c4n_A          170 RPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTN--THQIVVHET------RQIRAGVIIVAAGAAG--PAL  239 (405)
T ss_dssp             CHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCC------EEEEEEEEEECCGGGH--HHH
T ss_pred             cHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeC--CeEEEEECC------cEEECCEEEECCCccH--HHH
Confidence            356788999999999999999999999         887654  455666553      3799999999999875  356


Q ss_pred             HH-HcCCCc
Q 011610          231 AA-QLGHSI  238 (481)
Q Consensus       231 a~-~~G~~i  238 (481)
                      ++ .+|..+
T Consensus       240 ~~~~~g~~~  248 (405)
T 3c4n_A          240 VEQGLGLHT  248 (405)
T ss_dssp             HHHHHCCCC
T ss_pred             HHHhcCCCC
Confidence            66 777653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.11  E-value=1.5e-10  Score=113.50  Aligned_cols=119  Identities=19%  Similarity=0.276  Sum_probs=77.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..|||+||||||||++||+.|++  .|++|+|+|+...+        |.|  .+ .+.+.......|+            
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~~~g--------g~~--~~-G~~~~~~~i~~~~------------   57 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGFMAG--------GVA--AG-GQLTTTTIIENFP------------   57 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSGG--------GCC--TT-CGGGGSSEECCST------------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC--------Ccc--cC-CCcCChHHhhhcc------------
Confidence            46999999999999999999999  79999999987654        222  11 1111000000000            


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                    |           ||......++...+.+.+++.++++... .|.......  +.+.+.+.+     
T Consensus        58 --------------g-----------~~~~i~~~~l~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~~~~~~-----  104 (314)
T 4a5l_A           58 --------------G-----------FPNGIDGNELMMNMRTQSEKYGTTIITE-TIDHVDFST--QPFKLFTEE-----  104 (314)
T ss_dssp             --------------T-----------CTTCEEHHHHHHHHHHHHHHTTCEEECC-CEEEEECSS--SSEEEEETT-----
T ss_pred             --------------C-----------CcccCCHHHHHHHHHHHHhhcCcEEEEe-EEEEeecCC--CceEEEECC-----
Confidence                          0           0111123456667777788889988765 455555543  456666654     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +.++.+|+||+|||+.+
T Consensus       105 ~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A          105 GKEVLTKSVIIATGATA  121 (314)
T ss_dssp             CCEEEEEEEEECCCEEE
T ss_pred             CeEEEEeEEEEcccccc
Confidence            67899999999999754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.10  E-value=2.3e-10  Score=116.05  Aligned_cols=60  Identities=13%  Similarity=0.149  Sum_probs=47.8

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEE-eecccCceE--EEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKV-EKRTMNLVE--CIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~-~~~~~~~~~--~i~ad~VIlAtG~~g  225 (481)
                      ....+.+.|.+.+.+.|++|+++++|+++..++ ++.+.|++ .+     +.  +++||.||.|+|..+
T Consensus       101 ~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~-~~~~~v~~~~~-----g~~~~~~a~~vV~AdG~~S  163 (394)
T 1k0i_A          101 GQTEVTRDLMEAREACGATTVYQAAEVRLHDLQ-GERPYVTFERD-----GERLRLDCDYIAGCDGFHG  163 (394)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSCEEEEEECTT-SSSCEEEEEET-----TEEEEEECSEEEECCCTTC
T ss_pred             chHHHHHHHHHHHHhcCCeEEeceeEEEEEEec-CCceEEEEecC-----CcEEEEEeCEEEECCCCCc
Confidence            345677888888888899999999999998753 34566776 43     33  799999999999865

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.09  E-value=1.7e-09  Score=110.72  Aligned_cols=64  Identities=22%  Similarity=0.257  Sum_probs=50.9

Q ss_pred             eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE-EEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          153 RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF-LLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       153 ~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~-~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..+|. .....+.+.|.+.++++|++|+++++|++|..++  +.+ .|+++      +.++.||.||+|+|.+.
T Consensus       188 ~~~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~gv~~~------g~~~~ad~VV~a~~~~~  252 (425)
T 3ka7_A          188 TGIPE-GGCKGIIDALETVISANGGKIHTGQEVSKILIEN--GKAAGIIAD------DRIHDADLVISNLGHAA  252 (425)
T ss_dssp             CEEET-TSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEET------TEEEECSEEEECSCHHH
T ss_pred             ccccC-CCHHHHHHHHHHHHHHcCCEEEECCceeEEEEEC--CEEEEEEEC------CEEEECCEEEECCCHHH
Confidence            34442 3457789999999999999999999999999875  445 47665      56899999999998643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.09  E-value=3.9e-10  Score=110.93  Aligned_cols=113  Identities=21%  Similarity=0.299  Sum_probs=80.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .+.+||+|||||++|+++|+.|++  .|++|+|+|+..+|        |.|.....  ..      .++.    +     
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~g--------g~~~~~~~--~~------~~~~----~-----   66 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAAR--SGFSVAILDKAVAG--------GLTAEAPL--VE------NYLG----F-----   66 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSTT--------GGGGGCSC--BC------CBTT----B-----
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCC--------ccccccch--hh------hcCC----C-----
Confidence            356899999999999999999999  78999999986655        34422110  00      0000    0     


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                                                   .......+...+.+.+++.|++++. .+|.++..++  +.+.|.++     
T Consensus        67 -----------------------------~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~-----  109 (319)
T 3cty_A           67 -----------------------------KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQ--GGFDIETN-----  109 (319)
T ss_dssp             -----------------------------SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEET--TEEEEEES-----
T ss_pred             -----------------------------cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeC--CEEEEEEC-----
Confidence                                         0012234566677778888999988 7899998764  56777664     


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                       +.++.+|+||+|||+.+
T Consensus       110 -~~~~~~~~li~AtG~~~  126 (319)
T 3cty_A          110 -DDTYHAKYVIITTGTTH  126 (319)
T ss_dssp             -SSEEEEEEEEECCCEEE
T ss_pred             -CCEEEeCEEEECCCCCc
Confidence             45799999999999754

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.09  E-value=6e-10  Score=109.76  Aligned_cols=145  Identities=17%  Similarity=0.212  Sum_probs=94.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ..+||+|||||++|+++|+.|++.++|++|+|+|+. .+|.       +.+.  . .  .      .+.   ....    
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~gg-------g~~~--~-g--~------~~~---~~~~----  118 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG-------GSWL--G-G--Q------LFS---AMVM----  118 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT-------TTTC--C-G--G------GCC---CEEE----
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccc-------cccc--c-C--c------ccc---hhhh----
Confidence            457999999999999999999984338999999965 4441       2110  0 0  0      010   0010    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecC--C-C--CeEEEEE
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDN--A-G--RKFLLKV  201 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~--~-~--~~~~V~~  201 (481)
                      .    .+...++.+.|+.+...  +.++. ..++..+...|.+.+.+. |++++.+++|.++..++  + +  ...+|.+
T Consensus       119 ~----~~~~~~L~~~Gv~~~~~--g~~~~-~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv  191 (326)
T 2gjc_A          119 R----KPAHLFLQELEIPYEDE--GDYVV-VKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVT  191 (326)
T ss_dssp             E----TTTHHHHHHTTCCCEEC--SSEEE-ESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEE
T ss_pred             h----hHHHHHHHhhCcccccC--CCeEE-EcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEe
Confidence            1    12356777888877644  33332 345678888999988885 99999999999998763  1 1  3345655


Q ss_pred             eec---c------cCceEEEEc---------------CeEEEccCCCh
Q 011610          202 EKR---T------MNLVECIEA---------------DYLLIASGSSQ  225 (481)
Q Consensus       202 ~~~---~------~~~~~~i~a---------------d~VIlAtG~~g  225 (481)
                      ...   .      .....++.|               +.||.|||.++
T Consensus       192 ~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~  239 (326)
T 2gjc_A          192 NWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDG  239 (326)
T ss_dssp             EEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC-
T ss_pred             cceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCc
Confidence            310   0      012367999               99999999764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.09  E-value=4.3e-10  Score=110.97  Aligned_cols=115  Identities=22%  Similarity=0.338  Sum_probs=80.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .++||+|||||++|+++|+.|++  .|++|+|+|+..+|        |.|.....  .      ..|..    +      
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~g--------g~~~~~~~--~------~~~~~----~------   58 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKGMPG--------GQIAWSEE--V------ENFPG----F------   58 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT--------GGGGGCSC--B------CCSTT----C------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCCCCC--------cccccccc--c------ccCCC----C------
Confidence            46899999999999999999999  78999999987655        44422110  0      00000    0      


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEec--CCCCeEEEEEeeccc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSD--NAGRKFLLKVEKRTM  206 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~~~V~~~~~~~  206 (481)
                                                 |.......+...+.+.+++.|++++. ++|.++..+  + +..+.|.+.+   
T Consensus        59 ---------------------------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~-~~~~~v~~~~---  106 (325)
T 2q7v_A           59 ---------------------------PEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATS-HPYPFTVRGY---  106 (325)
T ss_dssp             ---------------------------SSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTS-SSCCEEEEES---
T ss_pred             ---------------------------CCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCC-CceEEEEECC---
Confidence                                       00012345566777778889999987 689999876  3 2226676665   


Q ss_pred             CceEEEEcCeEEEccCCCh
Q 011610          207 NLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g  225 (481)
                        +.++.+|+||+|||+.+
T Consensus       107 --g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A          107 --NGEYRAKAVILATGADP  123 (325)
T ss_dssp             --SCEEEEEEEEECCCEEE
T ss_pred             --CCEEEeCEEEECcCCCc
Confidence              56899999999999754

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.07  E-value=1e-09  Score=98.79  Aligned_cols=119  Identities=24%  Similarity=0.367  Sum_probs=86.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+|||||++|+.+|..|++  .|.+|+|+|+.. ..             .+....      ..|.            
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~~~~-------------~~~~~~------~~~~------------   47 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGRSKV-------------KGVSRV------PNYP------------   47 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCTT-------------TTCSCC------CCST------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCcc-------------cCchhh------hccC------------
Confidence            3799999999999999999999  789999999653 11             000000      0000            


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                    +           +|.......+.+.+.+.+++.|++++++ +|++++.++  +.+.|++++     
T Consensus        48 --------------~-----------~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~--~~~~v~~~~-----   94 (180)
T 2ywl_A           48 --------------G-----------LLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMG--GVFEVETEE-----   94 (180)
T ss_dssp             --------------T-----------CTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECS--SSEEEECSS-----
T ss_pred             --------------C-----------CcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcC--CEEEEEECC-----
Confidence                          0           0111234567788888899999999999 999998765  557777764     


Q ss_pred             eEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          209 VECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      + ++.+|.||+|+|..+   .+++.+|+++
T Consensus        95 g-~i~ad~vI~A~G~~~---~~~~~~g~~~  120 (180)
T 2ywl_A           95 G-VEKAERLLLCTHKDP---TLPSLLGLTR  120 (180)
T ss_dssp             C-EEEEEEEEECCTTCC---HHHHHHTCCE
T ss_pred             C-EEEECEEEECCCCCC---CccccCCCCc
Confidence            4 799999999999886   3566777653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.06  E-value=4.6e-10  Score=110.87  Aligned_cols=126  Identities=20%  Similarity=0.309  Sum_probs=81.3

Q ss_pred             CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchh
Q 011610           45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRG  124 (481)
Q Consensus        45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~  124 (481)
                      +..++++||+|||||++|+++|+.|++  .|++|+|||+......   .-+|.+.....  .      ..|+.       
T Consensus        17 ~~~~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~vie~~~~~~~---~~gg~~~~~~~--~------~~~~~-------   76 (338)
T 3itj_A           17 RGSHVHNKVTIIGSGPAAHTAAIYLAR--AEIKPILYEGMMANGI---AAGGQLTTTTE--I------ENFPG-------   76 (338)
T ss_dssp             ----CEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTB---CTTCGGGGSSE--E------CCSTT-------
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCC---CcCcccccchh--h------cccCC-------
Confidence            445567999999999999999999999  7999999997431000   00122211100  0      00000       


Q ss_pred             hHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          125 SFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                                                    +|.......+...+.+.+++.|+++++++ |.++..++  +.+.+.+.. 
T Consensus        77 ------------------------------~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~--~~~~v~~~~-  122 (338)
T 3itj_A           77 ------------------------------FPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSS--KPFKLWTEF-  122 (338)
T ss_dssp             ------------------------------CTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSS--SSEEEEETT-
T ss_pred             ------------------------------CcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcC--CEEEEEEEe-
Confidence                                          00001235677778888889999999998 99998764  667777631 


Q ss_pred             ccCceEEEEcCeEEEccCCCh
Q 011610          205 TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g  225 (481)
                       .+.+..+.+|.||+|||+.+
T Consensus       123 -~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A          123 -NEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             -CSSSCCEEEEEEEECCCEEE
T ss_pred             -cCCCcEEEeCEEEECcCCCc
Confidence             11256799999999999743

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.06  E-value=1.4e-09  Score=114.03  Aligned_cols=58  Identities=5%  Similarity=0.036  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      ...+.++|.+.++++|++|+++++|++|..++ ++..+|++.+     ++++.||.||.+++..
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~-~~~~gV~~~~-----g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMETTG-NKIEAVHLED-----GRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETT-----SCEEECSCEEECCC--
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEeeC-CeEEEEEecC-----CcEEEcCEEEECCCHH
Confidence            45788889999999999999999999999886 4455788887     7899999999988753

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.06  E-value=6.5e-10  Score=111.33  Aligned_cols=117  Identities=17%  Similarity=0.245  Sum_probs=83.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ..+||+|||||++|+++|+.|++  .|++|+|||+. .+|        |.|....    +         . . .++    
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~g--------g~~~~~~----~---------~-~-~~~----   63 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMPQLG--------GQLAALY----P---------E-K-HIY----   63 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC--------HHHHHTC----T---------T-S-EEC----
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCC--------CcccccC----C---------C-c-ccc----
Confidence            35899999999999999999999  79999999975 444        4442110    0         0 0 000    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                       ..           .+.+            ......+.+.+.+.+++.+++++++++|+++..++ ++.+.|++.+    
T Consensus        64 -~~-----------~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~----  114 (360)
T 3ab1_A           64 -DV-----------AGFP------------EVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLD-DGTFETRTNT----  114 (360)
T ss_dssp             -CS-----------TTCS------------SEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECT-TSCEEEEETT----
T ss_pred             -cC-----------CCCC------------CCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECC-CceEEEEECC----
Confidence             00           0000            01235667778888888899999999999998765 3468888765    


Q ss_pred             ceEEEEcCeEEEccCCC
Q 011610          208 LVECIEADYLLIASGSS  224 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~  224 (481)
                       +..+.+|+||+|||+.
T Consensus       115 -g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A          115 -GNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             -SCEEEEEEEEECCTTC
T ss_pred             -CcEEEeeEEEEccCCC
Confidence             5679999999999974

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.05  E-value=2.6e-09  Score=108.57  Aligned_cols=145  Identities=17%  Similarity=0.185  Sum_probs=82.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+||+|||||++|+++|+.|++  .|++|+|+|+......    +.++.-...   .........+.-.....      
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~----~~~~g~~l~---~~~~~~l~~~g~~~~~~------   68 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQPLS----GFGTGIVVQ---PELVHYLLEQGVELDSI------   68 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCC----CCSCEEECC---HHHHHHHHHTTCCGGGT------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCC----ccccccccC---hhHHHHHHHcCCccccc------
Confidence            35899999999999999999999  7999999996532100    001110000   00011111111000000      


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeee---ecC---CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVF---PVS---DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~---p~~---~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                      ....         .+..+.....+...   +..   .....+.+.|.+.+  .|++|+++++|++++.++  +.+.|++.
T Consensus        69 ~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~  135 (397)
T 2vou_A           69 SVPS---------SSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDS--ETVQMRFS  135 (397)
T ss_dssp             CBCC---------CEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECS--SCEEEEET
T ss_pred             cccc---------cceEEEecCCCCccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CEEEEEEC
Confidence            0000         00000000011111   100   12245666666654  589999999999998875  56778877


Q ss_pred             ecccCceEEEEcCeEEEccCCChh
Q 011610          203 KRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      +     +.+++||.||.|+|..+.
T Consensus       136 ~-----g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          136 D-----GTKAEANWVIGADGGASV  154 (397)
T ss_dssp             T-----SCEEEESEEEECCCTTCH
T ss_pred             C-----CCEEECCEEEECCCcchh
Confidence            5     568999999999998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.04  E-value=2.1e-09  Score=112.46  Aligned_cols=96  Identities=15%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             HHHHHHHhcCCcceeec-CCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEE
Q 011610          134 DTMSWFSDHGVELKTED-DGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECI  212 (481)
Q Consensus       134 ~~~~~~~~~Gi~~~~~~-~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i  212 (481)
                      ++...+...|.+...-. ...+.|  .....+.+.+.+.+++.||+++++++|.+++.++  +.+.|++.+     +.++
T Consensus       205 e~A~~l~~~g~~Vtli~~~~~~l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~-----g~~i  275 (484)
T 3o0h_A          205 EFANIFHGLGVKTTLLHRGDLILR--NFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTN-----GQTI  275 (484)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSSST--TSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECS--SSEEEEETT-----SCEE
T ss_pred             HHHHHHHHcCCeEEEEECCCcccc--ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeC--CEEEEEECC-----CcEE
Confidence            44455666776554322 222332  2345677888888999999999999999998765  557777765     5689


Q ss_pred             EcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          213 EADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       213 ~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      .+|.||+|+|..+....+ ++..|+++
T Consensus       276 ~aD~Vi~A~G~~p~~~~l~l~~~g~~~  302 (484)
T 3o0h_A          276 CADRVMLATGRVPNTTGLGLERAGVKV  302 (484)
T ss_dssp             EESEEEECCCEEECCTTCCHHHHTCCB
T ss_pred             EcCEEEEeeCCCcCCCCCChhhcCceE
Confidence            999999999965532222 45566654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.03  E-value=2.1e-10  Score=115.96  Aligned_cols=143  Identities=22%  Similarity=0.255  Sum_probs=87.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCc-eeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGR-CNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .+||+|||||++|+++|+.|++  .|.+|+|+|+....+.     .++ ..+..    ........+             
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~-----~~~~~~l~~----~~~~~l~~~-------------   66 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSELRA-----FGAGIYLWH----NGLRVLEGL-------------   66 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSCCC-----CSSEEEEEH----HHHHHHHHT-------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCC-----CCceEEeCc----cHHHHHHHc-------------
Confidence            5899999999999999999999  7999999996532210     011 00000    000111111             


Q ss_pred             cCChHHHHHHHHhcCC-----cceeecCCeee---e------cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC
Q 011610          129 LHGPMDTMSWFSDHGV-----ELKTEDDGRVF---P------VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG  194 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi-----~~~~~~~g~~~---p------~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~  194 (481)
                        +..+   -+...+.     .+.. . +...   +      .......+.+.|.+.+.+.|++|+++++|++++. +  
T Consensus        67 --g~~~---~~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~--  136 (379)
T 3alj_A           67 --GALD---DVLQGSHTPPTYETWM-H-NKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V--  136 (379)
T ss_dssp             --TCHH---HHHTTCBCCSCEEEEE-T-TEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T--
T ss_pred             --CCHH---HHHhhCCCccceEEEe-C-CceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C--
Confidence              0000   0001110     0000 0 1100   0      0123467888999999999999999999999986 4  


Q ss_pred             CeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCC
Q 011610          195 RKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH  236 (481)
Q Consensus       195 ~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~  236 (481)
                      +  .|++.+     +.+++||.||.|+|..+.   +.+.++.
T Consensus       137 ~--~v~~~~-----g~~~~ad~vV~AdG~~s~---vr~~l~~  168 (379)
T 3alj_A          137 G--RLTLQT-----GEVLEADLIVGADGVGSK---VRDSIGF  168 (379)
T ss_dssp             T--EEEETT-----SCEEECSEEEECCCTTCH---HHHHHCC
T ss_pred             C--EEEECC-----CCEEEcCEEEECCCccHH---HHHHhcC
Confidence            4  667664     567999999999998763   4445554

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.03  E-value=8.7e-10  Score=109.34  Aligned_cols=114  Identities=20%  Similarity=0.249  Sum_probs=79.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .+.+||+|||||++|+++|+.|++  .|++|+|+|+..+|        |.|......        ..++    .+     
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~g--------g~~~~~~~~--------~~~~----~~-----   64 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGTSFG--------GALMTTTDV--------ENYP----GF-----   64 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCSSCS--------CGGGSCSCB--------CCST----TC-----
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC--------Cceeccchh--------hhcC----CC-----
Confidence            356899999999999999999999  79999999976655        333221100        0000    00     


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEE-EEeeccc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLL-KVEKRTM  206 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V-~~~~~~~  206 (481)
                                                  |.......+...+.+.+++.|+++++++ |.++.. +  +.+.| .+.+   
T Consensus        65 ----------------------------~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~--~~~~v~~~~~---  109 (335)
T 2a87_A           65 ----------------------------RNGITGPELMDEMREQALRFGADLRMED-VESVSL-H--GPLKSVVTAD---  109 (335)
T ss_dssp             ----------------------------TTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-S--SSSEEEEETT---
T ss_pred             ----------------------------CCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-C--CcEEEEEeCC---
Confidence                                        0001234556677777788899999987 888876 3  44666 5554   


Q ss_pred             CceEEEEcCeEEEccCCCh
Q 011610          207 NLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g  225 (481)
                        +.++.+|+||+|||+.+
T Consensus       110 --g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A          110 --GQTHRARAVILAMGAAA  126 (335)
T ss_dssp             --SCEEEEEEEEECCCEEE
T ss_pred             --CCEEEeCEEEECCCCCc
Confidence              56799999999999753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.03  E-value=9.3e-10  Score=108.33  Aligned_cols=114  Identities=19%  Similarity=0.279  Sum_probs=82.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+|||||++|+++|+.|++  .|++|+|+|+. .+|        |.+..             .|+..  .+.     
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~g--------G~~~~-------------~~~~~--~~~-----   56 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGM--RQASVKIIESLPQLG--------GQLSA-------------LYPEK--YIY-----   56 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC--------HHHHH-------------HCTTS--EEC-----
T ss_pred             cceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCC--------ceehh-------------cCCCc--eEe-----
Confidence            5899999999999999999999  78999999965 444        33211             01000  000     


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                      .+.           +           +| ......+...+.+.+++.|++++++++|+++..++ ++.|.|.+.+     
T Consensus        57 ~~~-----------~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~-----  107 (332)
T 3lzw_A           57 DVA-----------G-----------FP-KIRAQELINNLKEQMAKFDQTICLEQAVESVEKQA-DGVFKLVTNE-----  107 (332)
T ss_dssp             CST-----------T-----------CS-SEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECT-TSCEEEEESS-----
T ss_pred             ccC-----------C-----------CC-CCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECC-CCcEEEEECC-----
Confidence            000           0           00 01245677788888888899999999999998875 3478888875     


Q ss_pred             eEEEEcCeEEEccCC
Q 011610          209 VECIEADYLLIASGS  223 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~  223 (481)
                      + ++.+|+||+|||+
T Consensus       108 g-~~~~d~vVlAtG~  121 (332)
T 3lzw_A          108 E-THYSKTVIITAGN  121 (332)
T ss_dssp             E-EEEEEEEEECCTT
T ss_pred             C-EEEeCEEEECCCC
Confidence            4 4999999999997

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.03  E-value=3.6e-10  Score=120.96  Aligned_cols=78  Identities=10%  Similarity=0.034  Sum_probs=56.6

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC-eEEEEEeec---ccCc-------eEEEEcCeEEEccCCChhH-
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR-KFLLKVEKR---TMNL-------VECIEADYLLIASGSSQQG-  227 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~---~~~~-------~~~i~ad~VIlAtG~~g~g-  227 (481)
                      ....+.+.|.+.+++.||+|+++++|+++..++ ++ ..+|++.+.   .++.       +.+++||.||+|+|+.+.. 
T Consensus       142 ~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~-~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr  220 (584)
T 2gmh_A          142 RLGHLVSWMGEQAEALGVEVYPGYAAAEILFHE-DGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLA  220 (584)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEETTCCEEEEEECT-TSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHH
T ss_pred             eHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHH
Confidence            356788899999999999999999999998765 33 345776520   0111       2579999999999998753 


Q ss_pred             HHHHHHcCCCc
Q 011610          228 HRLAAQLGHSI  238 (481)
Q Consensus       228 ~~la~~~G~~i  238 (481)
                      ..+.+.+|+..
T Consensus       221 ~~l~~~~gl~~  231 (584)
T 2gmh_A          221 KQLYKKFDLRA  231 (584)
T ss_dssp             HHHHHHTTTTT
T ss_pred             HHHHHHhCCCC
Confidence            34556667653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.03  E-value=1.6e-09  Score=110.16  Aligned_cols=143  Identities=17%  Similarity=0.299  Sum_probs=83.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ...+||+|||||++|+++|+.|++  .|.+|+|+|+. .++.+.  . ++.+.+...   ........            
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~--~-g~~~~~~~~---~~~~~l~~------------   83 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDNDREARI--F-GGTLDLHKG---SGQEAMKK------------   83 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSSSTTCCC--C-SCCEECCTT---THHHHHHH------------
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCccccc--c-CCeeeeCCc---cHHHHHHh------------
Confidence            356899999999999999999999  79999999965 333211  1 122222110   00011111            


Q ss_pred             HhcCChHHHHHHHHhcCCc---ceeecCCeee-----ec-------CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEec
Q 011610          127 FSLHGPMDTMSWFSDHGVE---LKTEDDGRVF-----PV-------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSD  191 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~---~~~~~~g~~~-----p~-------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~  191 (481)
                         .+..+.   +...+..   ......+..+     |.       ......+.+.|.+.+.  +++|+++++|++++.+
T Consensus        84 ---~gl~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~  155 (398)
T 2xdo_A           84 ---AGLLQT---YYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLE--NDTVIWDRKLVMLEPG  155 (398)
T ss_dssp             ---TTCHHH---HHHHCBCCCEEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC--TTSEEESCCEEEEEEC
T ss_pred             ---cChHHH---HHHhhcccceEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcC--CCEEEECCEEEEEEEC
Confidence               111010   0000000   0000011111     10       1234566677776654  3689999999999887


Q ss_pred             CCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          192 NAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       192 ~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +  +.+.|++.+     +.+++||.||.|+|..+
T Consensus       156 ~--~~v~v~~~~-----g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          156 K--KKWTLTFEN-----KPSETADLVILANGGMS  182 (398)
T ss_dssp             S--SSEEEEETT-----SCCEEESEEEECSCTTC
T ss_pred             C--CEEEEEECC-----CcEEecCEEEECCCcch
Confidence            5  567788765     56799999999999765

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.03  E-value=3.1e-09  Score=112.90  Aligned_cols=70  Identities=16%  Similarity=0.208  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ...+.+.|.+.+.+.   |+++++|++++.++  +.+.|++.+..++...+++||+||.|+|+.+.   +.+.+|+..
T Consensus       137 ~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~--~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~---vR~~lg~~~  206 (549)
T 2r0c_A          137 QHWLAPLLAEAVGER---LRTRSRLDSFEQRD--DHVRATITDLRTGATRAVHARYLVACDGASSP---TRKALGIDA  206 (549)
T ss_dssp             HHHHHHHHHHHHGGG---EECSEEEEEEEECS--SCEEEEEEETTTCCEEEEEEEEEEECCCTTCH---HHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHh---cccCcEEEEEEEeC--CEEEEEEEECCCCCEEEEEeCEEEECCCCCcH---HHHHcCCCC
Confidence            456777888888776   99999999999875  55777765411222367999999999998763   556667654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.02  E-value=1.8e-09  Score=112.36  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=47.4

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      .....+.+.|.+.+++.|++|+++++|++|..++ ++.+.|+++      +.++.||+||+|++.
T Consensus       231 gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~-~~~~~v~~~------~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          231 GGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQA-EGRWKVSLR------DSSLEADHVISAIPA  288 (477)
T ss_dssp             TCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECG-GGCEEEECS------SCEEEESEEEECSCH
T ss_pred             CCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcC-CceEEEEEC------CeEEEcCEEEECCCH
Confidence            3345788899999999999999999999998865 334878665      457999999999985

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.02  E-value=1.7e-09  Score=101.86  Aligned_cols=120  Identities=11%  Similarity=0.028  Sum_probs=80.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+|||||++|+.+|+.|++  .|.+|+|||+. ...       +..|+...    .      .+.  ...+.    .
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~~~~~-------G~~~~~~~----~------~~~--~~~~~----~   57 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAV-------MMPFLPPK----P------PFP--PGSLL----E   57 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGT-------TCCSSCCC----S------CCC--TTCHH----H
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCcC-------CcccCccc----c------ccc--hhhHH----h
Confidence            5899999999999999999999  79999999975 211       11121110    0      010  01111    1


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                      .++             +    ..+   |   ....+.+.|.+.+++. |++++ +++|+++..++ +..+.|.+.+    
T Consensus        58 ~~~-------------d----~~g---~---~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~-~~v~~v~~~~----  108 (232)
T 2cul_A           58 RAY-------------D----PKD---E---RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEG-NRVVGVRTWE----  108 (232)
T ss_dssp             HHC-------------C----TTC---C---CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-TEEEEEEETT----
T ss_pred             hhc-------------c----CCC---C---CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC-CEEEEEEECC----
Confidence            111             0    011   1   3567778888889887 99998 57999998765 3435677764    


Q ss_pred             ceEEEEcCeEEEccCCC
Q 011610          208 LVECIEADYLLIASGSS  224 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~  224 (481)
                       +.++.||.||+|+|..
T Consensus       109 -g~~i~a~~VV~A~G~~  124 (232)
T 2cul_A          109 -GPPARGEKVVLAVGSF  124 (232)
T ss_dssp             -SCCEECSEEEECCTTC
T ss_pred             -CCEEECCEEEECCCCC
Confidence             5579999999999964

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.02  E-value=5.5e-10  Score=115.95  Aligned_cols=153  Identities=14%  Similarity=0.107  Sum_probs=86.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCC-----CcEEEEeCC-CCCCce--EEecCCceeeccCCCcchhHHhhccCCCCh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPK-----LNVVIIEKG-KPLSKV--KISGGGRCNVTNGHCADKMILAGHYPRGHK  120 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g-----~~V~llE~~-~~g~k~--~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~  120 (481)
                      ..+||+|||||++|+++|+.|++  .|     .+|+|||+. .++...  ..   ..+.+...       +...+.... 
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~--~g~~~~~~~v~liE~~~~~g~~~~~~~---~~~~~~~~-------~~~~l~~~~-   95 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQE--RAQAQGALEVLFLDKQGDYRWHGNTLV---SQSELQIS-------FLKDLVSLR-   95 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHH--HHHHHCCCCEEEEESCSSCCSSGGGCC---SSCBCSSC-------TTSSSSTTT-
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--cccccCcccEEEEecCCCCCCcCCCCC---CCCcCCcc-------hhhcccccc-
Confidence            46899999999999999999999  57     899999965 444100  00   00100000       000000000 


Q ss_pred             hchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CCeE--
Q 011610          121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GRKF--  197 (481)
Q Consensus       121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~--  197 (481)
                             .......+..|+...+...........||   ....+.+.+...+++.+++++++++|+++..+++ ++.|  
T Consensus        96 -------~p~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~  165 (463)
T 3s5w_A           96 -------NPTSPYSFVNYLHKHDRLVDFINLGTFYP---CRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEAL  165 (463)
T ss_dssp             -------CTTCTTSHHHHHHHTTCHHHHHHHCCSCC---BHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEE
T ss_pred             -------CCCCCCChhHhhhhcCceeecccccCCCC---CHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEE
Confidence                   00001122233333332111111122332   3456777787888888999999999999987520 1333  


Q ss_pred             EEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          198 LLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       198 ~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .|++.+. .+...++.+|+||+|||+.+
T Consensus       166 ~V~~~~g-~g~~~~~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          166 RVISRNA-DGEELVRTTRALVVSPGGTP  192 (463)
T ss_dssp             EEEEEET-TSCEEEEEESEEEECCCCEE
T ss_pred             EEEEecC-CCceEEEEeCEEEECCCCCC
Confidence            5666541 11123899999999999743

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.01  E-value=1.2e-09  Score=112.20  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS   88 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~   88 (481)
                      ++||+|||||++|++||+.|++  .|.+|+|||+ +.+|+
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~--~G~~V~vlE~~~~~GG   38 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTN--AGKKVLLLEGGERLGG   38 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBT
T ss_pred             CCCEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCccC
Confidence            3799999999999999999999  7999999996 56764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.01  E-value=1.6e-09  Score=112.12  Aligned_cols=155  Identities=14%  Similarity=0.165  Sum_probs=87.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC-CCCCceEEecCCceeeccCCC----cchh-HHh--hccCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG-KPLSKVKISGGGRCNVTNGHC----ADKM-ILA--GHYPRG  118 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~-~~g~k~~~sG~g~~n~~~~~~----~~~~-~~~--~~~~~~  118 (481)
                      +.+||+|||||++|+++|..|++  .|.  +|+|+|+. .+|        |.|+......    .+.. ...  ..+...
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~--~G~~~~V~v~E~~~~~G--------G~~~~~~~~~~~~~ip~~~~~~~~~~~~~g   74 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLA--EKAFDQVTLFERRGSPG--------GVWNYTSTLSNKLPVPSTNPILTTEPIVGP   74 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT--TTCCSEEEEECSSSSSS--------TTCSCCSCCCSCCCSSBCCTTCCCCCBCCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh--cCCCCCeEEEecCCCCC--------CeecCCCCCCcccccccccccccccccccc
Confidence            46899999999999999999999  688  99999965 565        3332221100    0000 000  000000


Q ss_pred             ------ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610          119 ------HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN  192 (481)
Q Consensus       119 ------~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~  192 (481)
                            ...++.. +....+.+...+   .+.++.  .....||   ....+.+.+.+.+++.++.++++++|+++..++
T Consensus        75 ~~~~~~~~~~~~~-l~~~~~~~~~~~---~~~~~~--~~~~~~~---~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~  145 (447)
T 2gv8_A           75 AALPVYPSPLYRD-LQTNTPIELMGY---CDQSFK--PQTLQFP---HRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD  145 (447)
T ss_dssp             SSCCBCCCCCCTT-CBCSSCHHHHSC---TTCCCC--TTCCSSC---BHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET
T ss_pred             cccCCccCchhhh-hccCCCHHHhcc---CCCCCC--CCCCCCC---CHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC
Confidence                  0001000 011111111111   111111  1111222   356777888888888788999999999998764


Q ss_pred             CCCeEEEEEeecccCc-eEEEEcCeEEEccCCC
Q 011610          193 AGRKFLLKVEKRTMNL-VECIEADYLLIASGSS  224 (481)
Q Consensus       193 ~~~~~~V~~~~~~~~~-~~~i~ad~VIlAtG~~  224 (481)
                        +.|.|++.+..++. ..++.+|+||+|||+.
T Consensus       146 --~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~  176 (447)
T 2gv8_A          146 --GSWVVTYKGTKAGSPISKDIFDAVSICNGHY  176 (447)
T ss_dssp             --TEEEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             --CeEEEEEeecCCCCeeEEEEeCEEEECCCCC
Confidence              67888876411121 2379999999999974

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.00  E-value=1.8e-09  Score=112.41  Aligned_cols=151  Identities=16%  Similarity=0.170  Sum_probs=86.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccC-CCCc---EEEEeCC-CCCCceEEecCCceeeccCCCcchhH---HhhccCCCChh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVA-PKLN---VVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMI---LAGHYPRGHKE  121 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~-~g~~---V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~---~~~~~~~~~~~  121 (481)
                      .+||+|||||++|++||..|++.. .|.+   |+|||+. .+|        |.|+.......+...   ....|......
T Consensus         2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G--------G~w~~~~~~g~~~~g~~~~~~~y~~l~~~   73 (464)
T 2xve_A            2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG--------GQWNYTWRTGLDENGEPVHSSMYRYLWSN   73 (464)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC--------GGGSCCSCCSBCTTSSBCCCCCCTTCBCS
T ss_pred             CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC--------CEeecCCCCCccccCCCCcCccccchhhc
Confidence            379999999999999999998711 2688   9999975 565        445433211100000   00001000000


Q ss_pred             chhhH--HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCE--EEcCceEEEEEecCCCCeE
Q 011610          122 FRGSF--FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVV--LQTGKVVTTASSDNAGRKF  197 (481)
Q Consensus       122 ~~~~~--l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~  197 (481)
                      .....  +..+...      ...+      .....|   .....+.+.+.+.+++.|++  ++++++|+.+..+++++.|
T Consensus        74 ~~~~~~~~~~~~~~------~~~~------~~~~~~---~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~  138 (464)
T 2xve_A           74 GPKECLEFADYTFD------EHFG------KPIASY---PPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTF  138 (464)
T ss_dssp             SCGGGTCBTTBCHH------HHHS------SCCCSS---CBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEE
T ss_pred             CChhhcccCCCCCC------cccC------CCCCCC---CCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcE
Confidence            00000  0011100      0000      001122   24577888888888888998  9999999999876512378


Q ss_pred             EEEEeecccCceEEEEcCeEEEccCC
Q 011610          198 LLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       198 ~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      .|++.+...+...++.+|+||+|||.
T Consensus       139 ~V~~~~~~~g~~~~~~~d~VVvAtG~  164 (464)
T 2xve_A          139 TVTVQDHTTDTIYSEEFDYVVCCTGH  164 (464)
T ss_dssp             EEEEEETTTTEEEEEEESEEEECCCS
T ss_pred             EEEEEEcCCCceEEEEcCEEEECCCC
Confidence            88876421222367999999999994

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.99  E-value=1.9e-09  Score=104.39  Aligned_cols=110  Identities=15%  Similarity=0.261  Sum_probs=76.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ++||+|||||++|+++|+.|++  .|++|+|+|+.....        +.  ....        ..|...           
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~~--------~~--~~~~--------~~~~~~-----------   50 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGR--ARKNILLVDAGERRN--------RF--ASHS--------HGFLGQ-----------   50 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCCGG--------GG--CSCC--------CSSTTC-----------
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCccc--------cc--chhh--------cCCcCC-----------
Confidence            5899999999999999999999  789999999765331        10  0000        000000           


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                 .......+...+.+.+.+. +++++. ++|+++..++  +.+.|.+.+     
T Consensus        51 ---------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~~-----   95 (297)
T 3fbs_A           51 ---------------------------DGKAPGEIIAEARRQIERYPTIHWVE-GRVTDAKGSF--GEFIVEIDG-----   95 (297)
T ss_dssp             ---------------------------TTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEEEEET--TEEEEEETT-----
T ss_pred             ---------------------------CCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEEEEcC--CeEEEEECC-----
Confidence                                       0012344556666666665 677764 5999998775  668888875     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +.++.+|+||+|||+.+
T Consensus        96 g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           96 GRRETAGRLILAMGVTD  112 (297)
T ss_dssp             SCEEEEEEEEECCCCEE
T ss_pred             CCEEEcCEEEECCCCCC
Confidence            56899999999999754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.97  E-value=2.5e-09  Score=111.19  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE-EeecccCceEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK-VEKRTMNLVECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~-~~~~~~~~~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ...+.+.+.+.+++.||+++++++|.++..++ ++.+.|+ +.+     +. +.+|.||+|+|..+....+ ++.+|+++
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~-----g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~  282 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADA-DGRRVATTMKH-----GE-IVADQVMLALGRMPNTNGLGLEAAGVRT  282 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECT-TSCEEEEESSS-----CE-EEESEEEECSCEEESCTTSSTGGGTCCB
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC-CCEEEEEEcCC-----Ce-EEeCEEEEeeCcccCCCCCCccccCceE
Confidence            46778888899999999999999999998764 3446677 664     55 9999999999976542222 45556554

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.97  E-value=2.1e-09  Score=113.82  Aligned_cols=135  Identities=17%  Similarity=0.223  Sum_probs=88.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHh-ccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAK-TVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la-~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      .++||+|||||++|+++|+.|+ +  .|.+|+|||+. .+|        |.|....            |+....+.... 
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~--~G~~v~viE~~~~~G--------Gtw~~~~------------ypg~~~d~~s~-   63 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHE--LGLTTVGFDKADGPG--------GTWYWNR------------YPGALSDTESH-   63 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSSC--------THHHHCC------------CTTCEEEEEGG-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEECCCCCC--------CcccccC------------CCCceecCCcc-
Confidence            4589999999999999999999 7  78999999965 555        3332211            10000000000 


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                      ...+....  +.....+.       ...|+   ....+.+.+.+.+++.|+  +++++++|+++..+++++.|.|++.+ 
T Consensus        64 ~~~~~~~~--~~~~~~~~-------~~~~~---~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~-  130 (540)
T 3gwf_A           64 LYRFSFDR--DLLQESTW-------KTTYI---TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDH-  130 (540)
T ss_dssp             GSSCCSCH--HHHHHCCC-------SBSEE---EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETT-
T ss_pred             eeeecccc--ccccCCCC-------cccCC---CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcC-
Confidence            00111000  01111111       12232   356778888888999998  89999999999887523578888876 


Q ss_pred             ccCceEEEEcCeEEEccCC
Q 011610          205 TMNLVECIEADYLLIASGS  223 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~  223 (481)
                          +.++.||+||+|||.
T Consensus       131 ----G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A          131 ----GEVYRAKYVVNAVGL  145 (540)
T ss_dssp             ----SCEEEEEEEEECCCS
T ss_pred             ----CCEEEeCEEEECCcc
Confidence                668999999999995

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.96  E-value=1e-09  Score=108.49  Aligned_cols=112  Identities=25%  Similarity=0.339  Sum_probs=78.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-----CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-----GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRG  124 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-----~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~  124 (481)
                      .+||+|||||++|+++|+.|++  .|++|+|+|+     ...+        |.+.....  .      ..+.        
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~g--------g~~~~~~~--~------~~~~--------   61 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPG--------GQLTTTTD--V------ENFP--------   61 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTT--------CGGGGCSE--E------CCST--------
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCccccCCC--------ceeeeccc--c------ccCC--------
Confidence            5799999999999999999999  7899999997     1222        22211100  0      0000        


Q ss_pred             hHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          125 SFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                          .                         +|.......+...+.+.+++.|++++.++ |.++..++  +.+.|++ + 
T Consensus        62 ----~-------------------------~~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~--~~~~v~~-~-  107 (333)
T 1vdc_A           62 ----G-------------------------FPEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSS--KPFKLFT-D-  107 (333)
T ss_dssp             ----T-------------------------CTTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSS--SSEEEEC-S-
T ss_pred             ----C-------------------------CccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcC--CEEEEEE-C-
Confidence                0                         00001234567777788888999999987 99998764  5677776 3 


Q ss_pred             ccCceEEEEcCeEEEccCCCh
Q 011610          205 TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~g  225 (481)
                          +.++++|.||+|||+++
T Consensus       108 ----~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A          108 ----SKAILADAVILAIGAVA  124 (333)
T ss_dssp             ----SEEEEEEEEEECCCEEE
T ss_pred             ----CcEEEcCEEEECCCCCc
Confidence                57899999999999754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.96  E-value=1.5e-09  Score=108.74  Aligned_cols=134  Identities=22%  Similarity=0.260  Sum_probs=82.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+|||||++|+++|+.|++  .|. +|+|||+..+|        +.|.......        ++..  ..+....+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~--~g~~~v~lie~~~~G--------g~~~~~~~~~--------~~~~--~~~~~~~~g   63 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKD--FGITDVIILEKGTVG--------HSFKHWPKST--------RTIT--PSFTSNGFG   63 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSSTT--------HHHHTSCTTC--------BCSS--CCCCCGGGT
T ss_pred             cCcEEEECcCHHHHHHHHHHHH--cCCCcEEEEecCCCC--------CccccCcccc--------cccC--cchhcccCC
Confidence            4799999999999999999999  688 99999976655        3221110000        0000  000000000


Q ss_pred             --cC---ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610          129 --LH---GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       129 --~~---~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                        .+   ..... ..+..          ...+   .....+...+.+.+++.|++++++++|+++..++  +.+.|.+.+
T Consensus        64 ~~~~~~~~~~~~-~~~~~----------~~~~---~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~  127 (369)
T 3d1c_A           64 MPDMNAISMDTS-PAFTF----------NEEH---ISGETYAEYLQVVANHYELNIFENTVVTNISADD--AYYTIATTT  127 (369)
T ss_dssp             CCCTTCSSTTCC-HHHHH----------CCSS---CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSEEEEESS
T ss_pred             chhhhhcccccc-ccccc----------cccC---CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECC--CeEEEEeCC
Confidence              00   00000 00000          0001   1345677788888888999999999999998764  567787764


Q ss_pred             cccCceEEEEcCeEEEccCCCh
Q 011610          204 RTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                           + ++.+|+||+|||+.+
T Consensus       128 -----g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A          128 -----E-TYHADYIFVATGDYN  143 (369)
T ss_dssp             -----C-CEEEEEEEECCCSTT
T ss_pred             -----C-EEEeCEEEECCCCCC
Confidence                 3 689999999999754

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.95  E-value=4.9e-10  Score=116.14  Aligned_cols=160  Identities=16%  Similarity=0.152  Sum_probs=88.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCCh---hchhh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHK---EFRGS  125 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~---~~~~~  125 (481)
                      +++||+|||||++|+++|+.|++  .|++|+|||+....+.    |...|.    .... ......+.-...   .+...
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~--~G~~V~vlE~~~~~~~----g~~~~g----~~l~-~~~l~~lg~~~~~~~~~~~~   73 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSR--RGLKILLVDSKPWNRI----GDKPCG----DAVS-KAHFDKLGMPYPKGEELENK   73 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSS--SSCCEEEECSSCGGGT----TCSCCC----CEEE-HHHHHHTTCCCCCGGGEEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCC----Cccccc----cccc-HHHHHHhcCCCCchHHHHhh
Confidence            35899999999999999999999  7999999996532100    000010    0000 011111110000   00000


Q ss_pred             --HHhcCChHHHHHHHHhcC-CcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610          126 --FFSLHGPMDTMSWFSDHG-VELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       126 --~l~~~~~~~~~~~~~~~G-i~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                        -+..+.+.         + ..+.....+.    ......+.+.|.+.+.+.|++++++++|+++..++ +...+|++.
T Consensus        74 ~~~~~~~~~~---------~~~~~~~~~~~~----~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~  139 (453)
T 3atr_A           74 INGIKLYSPD---------MQTVWTVNGEGF----ELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED-GYVKGAVLF  139 (453)
T ss_dssp             EEEEEEECTT---------SSCEEEEEEEEE----EECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEE
T ss_pred             hcceEEECCC---------CceEEeECCCcE----EEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC-CEEEEEEEE
Confidence              00000000         0 0000010011    12456788899999999999999999999998765 333346654


Q ss_pred             ecccCceEEEEcCeEEEccCCChhHHHHHHHcCC
Q 011610          203 KRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH  236 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~  236 (481)
                      +..++...+++||.||.|+|..+.   +.+.+|.
T Consensus       140 ~~~~G~~~~~~ad~VV~AdG~~s~---vr~~l~~  170 (453)
T 3atr_A          140 NRRTNEELTVYSKVVVEATGYSRS---FRSKLPP  170 (453)
T ss_dssp             ETTTTEEEEEECSEEEECCGGGCT---TGGGSCT
T ss_pred             EcCCCceEEEEcCEEEECcCCchh---hHHhcCC
Confidence            200122248999999999997652   3344554

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.95  E-value=3.4e-09  Score=112.46  Aligned_cols=137  Identities=20%  Similarity=0.180  Sum_probs=86.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      +..+||+|||||++|+++|+.|++  .|++|+|||+. .+|        |.|........       .. ....... . 
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~G--------G~w~~~~~pg~-------~~-d~~~~~~-~-   73 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVG--------GVWYWNRYPGA-------RC-DIESIEY-C-   73 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC--------THHHHCCCTTC-------BC-SSCTTTS-S-
T ss_pred             CCCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCC--------CcccccCCCce-------ee-ccccccc-c-
Confidence            346899999999999999999999  68999999965 555        44421110000       00 0000000 0 


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCC--CEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRG--VVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                       ..|.+..    ......       ...|+   ....+.+.+...+++.+  ++++++++|+++..+++++.|.|++++ 
T Consensus        74 -~~f~~~~----~~~~~~-------~~~~~---~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~-  137 (542)
T 1w4x_A           74 -YSFSEEV----LQEWNW-------TERYA---SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNH-  137 (542)
T ss_dssp             -CCSCHHH----HHHCCC-------CBSSC---BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETT-
T ss_pred             -cccChhh----hhccCc-------ccccC---CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECC-
Confidence             0112211    111110       11232   34567777777777766  679999999999876423578888875 


Q ss_pred             ccCceEEEEcCeEEEccCCC
Q 011610          205 TMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~~  224 (481)
                          +.+++||.||+|||..
T Consensus       138 ----G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A          138 ----GDRIRARYLIMASGQL  153 (542)
T ss_dssp             ----CCEEEEEEEEECCCSC
T ss_pred             ----CCEEEeCEEEECcCCC
Confidence                5679999999999964

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.95  E-value=5.6e-10  Score=117.27  Aligned_cols=162  Identities=13%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             CCCCCCCCeEEEECCchHHHHHHHHHhccC------------CCCcEEEEeCC-CCCCc-eEEecCCceeeccCCCcchh
Q 011610           44 LTHTSSEELLVVVGGGAAGVYGAIRAKTVA------------PKLNVVIIEKG-KPLSK-VKISGGGRCNVTNGHCADKM  109 (481)
Q Consensus        44 ~~~~~~~~DVvIIGgG~aGl~aA~~la~~~------------~g~~V~llE~~-~~g~k-~~~sG~g~~n~~~~~~~~~~  109 (481)
                      +++.+..+||||||+||+||++|+.|.+.+            .+..++.+|+. ..+.. -..--+.+|++.        
T Consensus        33 ~tp~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~--------  104 (501)
T 4b63_A           33 STPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQIS--------  104 (501)
T ss_dssp             CCCTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSC--------
T ss_pred             CCCCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCcccccc--------
Confidence            344456689999999999999999998621            12345566632 22210 000000111110        


Q ss_pred             HHhhccCCCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEE
Q 011610          110 ILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTAS  189 (481)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~  189 (481)
                       |..       +++. +-...++..+..++++.|--+........||   ...++.++|...+++.+..|+++++|++++
T Consensus       105 -fl~-------Dlvt-l~~P~s~~sf~~yl~~~~rl~~f~~~~~~~p---~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~  172 (501)
T 4b63_A          105 -FIK-------DLAT-LRDPRSSFTFLNYLHQKGRLIHFTNLSTFLP---ARLEFEDYMRWCAQQFSDVVAYGEEVVEVI  172 (501)
T ss_dssp             -GGG-------SSST-TTCTTCTTSHHHHHHHHTCHHHHHTTCCSCC---BHHHHHHHHHHHHHTTGGGEEESEEEEEEE
T ss_pred             -chh-------hhcc-ccCCCCccchHHHHHHhCCccCCccccCCCC---CHHHHHHHHHHHHHHcCCceEcceEEEeec
Confidence             000       0100 0001112234556655543222222234454   356788999999998888899999999998


Q ss_pred             ecCCC------CeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          190 SDNAG------RKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       190 ~~~~~------~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..+.+      +.|.|++.+...+...++.|+.||+|||..+
T Consensus       173 ~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P  214 (501)
T 4b63_A          173 PGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTA  214 (501)
T ss_dssp             EECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEE
T ss_pred             cccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCC
Confidence            64311      2588988765555567899999999999644

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.95  E-value=2.8e-09  Score=113.14  Aligned_cols=136  Identities=19%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ...+||+|||||++|+++|+.|++  .|.+|+|||+. .+|        |.|.........       . ......+.  
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~G--------Gtw~~~~ypg~~-------~-dv~s~~y~--   78 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAASGVG--------GVWYWNRYPGAR-------C-DVESIDYS--   78 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC--------THHHHCCCTTCB-------C-SSCTTTSS--
T ss_pred             CCCCCEEEECchHHHHHHHHHHHh--CCCCEEEEeCCCCCC--------CccccCCCCCce-------e-CCCchhcc--
Confidence            356899999999999999999999  78999999965 555        444211100000       0 00000100  


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                       ..|.. +   .....+.       ...|   .....+.+.+.+.+++.|+  +++++++|+++..+++.+.|.|++.+ 
T Consensus        79 -~~f~~-~---~~~~~~~-------~~~~---~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~-  142 (549)
T 4ap3_A           79 -YSFSP-E---LEQEWNW-------SEKY---ATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR-  142 (549)
T ss_dssp             -CCSCH-H---HHHHCCC-------SSSS---CBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETT-
T ss_pred             -ccccc-c---cccCCCC-------ccCC---CCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECC-
Confidence             01111 1   1111111       1122   2456788888888999998  89999999999876523478898876 


Q ss_pred             ccCceEEEEcCeEEEccCC
Q 011610          205 TMNLVECIEADYLLIASGS  223 (481)
Q Consensus       205 ~~~~~~~i~ad~VIlAtG~  223 (481)
                          +.++.||+||+|||.
T Consensus       143 ----G~~i~ad~lV~AtG~  157 (549)
T 4ap3_A          143 ----GDEVSARFLVVAAGP  157 (549)
T ss_dssp             ----CCEEEEEEEEECCCS
T ss_pred             ----CCEEEeCEEEECcCC
Confidence                667999999999994

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.95  E-value=2.8e-09  Score=104.56  Aligned_cols=113  Identities=22%  Similarity=0.296  Sum_probs=78.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +.+||+|||||++|+++|+.|++  .|++|+|+|+..+|        |.+.....  .      ..++    .       
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~g--------g~~~~~~~--~------~~~~----~-------   54 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKG--------GQLTTTTE--V------ENWP----G-------   54 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTT--------GGGGGCSB--C------CCST----T-------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEccCCCC--------ceEecchh--h------hhCC----C-------
Confidence            35899999999999999999999  78999999976665        33321110  0      0000    0       


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                +|.......+.+.+.+.+++.|++++.++ |+.+..++  +.+.| +.+     
T Consensus        55 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~--~~~~v-~~~-----   99 (320)
T 1trb_A           55 --------------------------DPNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQN--RPFRL-NGD-----   99 (320)
T ss_dssp             --------------------------CCSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSS--SSEEE-EES-----
T ss_pred             --------------------------CCCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecC--CEEEE-EeC-----
Confidence                                      00001234556666777788899999986 98988654  56776 444     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +..+.+|+||+|||+.+
T Consensus       100 ~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A          100 NGEYTCDALIIATGASA  116 (320)
T ss_dssp             SCEEEEEEEEECCCEEE
T ss_pred             CCEEEcCEEEECCCCCc
Confidence            56799999999999753

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.95  E-value=4.2e-09  Score=111.35  Aligned_cols=58  Identities=16%  Similarity=0.167  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..++...+.+.+++.|+++++++.|.++...+  +.+.|.+.+     +..+.+|.|++|+|..+
T Consensus       262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~--~~~~v~~~~-----~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD--DKILVEFSD-----KTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEEET--TEEEEEETT-----SCEEEESEEEECSCEEE
T ss_pred             chhHHHHHHHHHHhhcceeecceEEEEEEecC--CeEEEEEcC-----CCeEEEEEEEEcccccC
Confidence            45677888899999999999999999998875  667777765     56788999999999654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.94  E-value=9.1e-10  Score=115.50  Aligned_cols=59  Identities=12%  Similarity=0.179  Sum_probs=46.4

Q ss_pred             eecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          155 FPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       155 ~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      ||.......+.++|.+.+.+.|++|+++++|++|..++  +.  +++.+     +.++.||+||.++-
T Consensus       215 ~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~--~~--v~~~~-----G~~~~ad~vI~t~P  273 (513)
T 4gde_A          215 FPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANN--KT--VTLQD-----GTTIGYKKLVSTMA  273 (513)
T ss_dssp             EESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTT--TE--EEETT-----SCEEEEEEEEECSC
T ss_pred             ecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccC--CE--EEEcC-----CCEEECCEEEECCC
Confidence            44445567788999998889999999999999998764  43  44555     67899999998764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.94  E-value=2.8e-09  Score=105.36  Aligned_cols=116  Identities=18%  Similarity=0.310  Sum_probs=81.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|+++|+.|++  .|++|+|+|+. .+|        |.|...             ++.  ..+.    
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~g--------g~~~~~-------------~~~--~~~~----   54 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLPEPG--------GQLTAL-------------YPE--KYIY----   54 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSC--------HHHHHT-------------CTT--SEEC----
T ss_pred             CcCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCC--------Ceeecc-------------CCC--ceee----
Confidence            35899999999999999999998  78999999965 444        344211             000  0000    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                       .+.           +.           | ......+.+.+.+.+++.+++++++++|..+..++  +.+.|.+.+    
T Consensus        55 -~~~-----------~~-----------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~----  104 (335)
T 2zbw_A           55 -DVA-----------GF-----------P-KVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREG--DLFKVTTSQ----  104 (335)
T ss_dssp             -CST-----------TC-----------S-SEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEET--TEEEEEETT----
T ss_pred             -ccC-----------CC-----------C-CCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECC--CEEEEEECC----
Confidence             000           00           0 01235566777777888899999999999998765  567787764    


Q ss_pred             ceEEEEcCeEEEccCCC
Q 011610          208 LVECIEADYLLIASGSS  224 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~  224 (481)
                       +.++.+|+||+|||+.
T Consensus       105 -g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A          105 -GNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             -SCEEEEEEEEECCTTS
T ss_pred             -CCEEEeCEEEECCCCC
Confidence             5679999999999974

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.92  E-value=1.6e-08  Score=111.11  Aligned_cols=39  Identities=18%  Similarity=0.351  Sum_probs=34.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS   88 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~   88 (481)
                      ...+||+|||||++|++||+.|++  .|++|+|+|+ +.+|+
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHN--FGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEecccceec
Confidence            346899999999999999999999  6899999995 56664

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.92  E-value=1.2e-08  Score=107.82  Aligned_cols=72  Identities=22%  Similarity=0.368  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCe---EEEEEeecccCceE-EEEcCeEEEccCCChhHHHHHHHcCC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK---FLLKVEKRTMNLVE-CIEADYLLIASGSSQQGHRLAAQLGH  236 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~---~~V~~~~~~~~~~~-~i~ad~VIlAtG~~g~g~~la~~~G~  236 (481)
                      ...+.+.+.+.+++.||+++++++|+++..++ ++.   +.|++.+     +. ++.||.||+|+|..+....+++.+|+
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~~v~~~~v~~~~-----G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl  327 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPN-----GEMRIETDFVFLGLGEQPRSAELAKILGL  327 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETT-----EEEEEECSCEEECCCCEECCHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcC-CCceEEEEEEECC-----CcEEEEcCEEEECcCCccCCccCHHHcCC
Confidence            45677888899999999999999999998754 332   5666654     55 89999999999987643216777787


Q ss_pred             Cc
Q 011610          237 SI  238 (481)
Q Consensus       237 ~i  238 (481)
                      ++
T Consensus       328 ~~  329 (523)
T 1mo9_A          328 DL  329 (523)
T ss_dssp             CB
T ss_pred             cc
Confidence            65

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.91  E-value=1.4e-08  Score=106.41  Aligned_cols=101  Identities=18%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             HHHHHHHhcCCcceeec-CCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEE
Q 011610          134 DTMSWFSDHGVELKTED-DGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECI  212 (481)
Q Consensus       134 ~~~~~~~~~Gi~~~~~~-~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i  212 (481)
                      ++...+...|.+...-. ..++.|  .....+.+.+.+.+++.||+++++++|.++..++  +.+.|.+.+...+...++
T Consensus       212 E~A~~l~~~g~~Vtlv~~~~~~l~--~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i  287 (491)
T 3urh_A          212 ELGSVWARLGAKVTVVEFLDTILG--GMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSG--DGAKVTFEPVKGGEATTL  287 (491)
T ss_dssp             HHHHHHHHHTCEEEEECSSSSSSS--SSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTSCCCEEE
T ss_pred             HHHHHHHHcCCEEEEEeccccccc--cCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeC--CEEEEEEEecCCCceEEE
Confidence            34455666666544322 223333  2346677888888999999999999999998765  566666653111223689


Q ss_pred             EcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          213 EADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       213 ~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      .+|.||+|+|-.+....+ ++..|+.+
T Consensus       288 ~~D~Vi~a~G~~p~~~~l~l~~~g~~~  314 (491)
T 3urh_A          288 DAEVVLIATGRKPSTDGLGLAKAGVVL  314 (491)
T ss_dssp             EESEEEECCCCEECCTTSCHHHHTCCB
T ss_pred             EcCEEEEeeCCccCCCccCchhcCceE
Confidence            999999999976543222 45556654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.91  E-value=1.2e-08  Score=110.26  Aligned_cols=76  Identities=14%  Similarity=0.264  Sum_probs=55.9

Q ss_pred             ChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCC--CCeEEEEEeec---ccCceEEEEcCeEEEccCCChhHHHHHH
Q 011610          160 SSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNA--GRKFLLKVEKR---TMNLVECIEADYLLIASGSSQQGHRLAA  232 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~--~~~~~V~~~~~---~~~~~~~i~ad~VIlAtG~~g~g~~la~  232 (481)
                      ....+.+.|.+.+++.|+  +|+++++|++++.+++  +..+.|++.+.   .++...+++||+||.|+|+.+   .+.+
T Consensus       139 ~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S---~vR~  215 (639)
T 2dkh_A          139 NQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS---NVRR  215 (639)
T ss_dssp             CHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC---HHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch---HHHH
Confidence            456788899999999987  9999999999987641  12567766520   122236899999999999876   3566


Q ss_pred             HcCCCc
Q 011610          233 QLGHSI  238 (481)
Q Consensus       233 ~~G~~i  238 (481)
                      .+|+..
T Consensus       216 ~lg~~~  221 (639)
T 2dkh_A          216 AIGRQL  221 (639)
T ss_dssp             HTTCCC
T ss_pred             HhCCCC
Confidence            777764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.91  E-value=7.3e-09  Score=108.91  Aligned_cols=60  Identities=20%  Similarity=0.152  Sum_probs=48.3

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +...+...|.+.+++.|++++++ +|+++..++++..+.|++.+     +.+++||.||.|+|.++
T Consensus       171 ~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~-----g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          171 DADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQ-----HGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESS-----SCEEECSEEEECCGGGC
T ss_pred             cHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECC-----CCEEEcCEEEECCCcch
Confidence            56788899999999999999999 99999875412235677765     55799999999999764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.91  E-value=1e-08  Score=106.61  Aligned_cols=61  Identities=13%  Similarity=0.158  Sum_probs=45.2

Q ss_pred             eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEE---eecccCceEEEEcCeEEEccCCC
Q 011610          153 RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKV---EKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       153 ~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~---~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      ..+| ......+.+.|.+.+   |++|+++++|++|..++  +.+.|++   .+     +.++.||+||+|++..
T Consensus       230 ~~~~-~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~--~~~~v~~~~~~~-----g~~~~ad~vV~a~~~~  293 (478)
T 2ivd_A          230 LSTF-DGGLQVLIDALAASL---GDAAHVGARVEGLARED--GGWRLIIEEHGR-----RAELSVAQVVLAAPAH  293 (478)
T ss_dssp             EEEE-TTCTHHHHHHHHHHH---GGGEESSEEEEEEECC----CCEEEEEETTE-----EEEEECSEEEECSCHH
T ss_pred             EEEE-CCCHHHHHHHHHHHh---hhhEEcCCEEEEEEecC--CeEEEEEeecCC-----CceEEcCEEEECCCHH
Confidence            3444 345667788887765   67999999999998765  4577877   44     5689999999999853

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.90  E-value=5.4e-09  Score=102.13  Aligned_cols=114  Identities=14%  Similarity=0.154  Sum_probs=78.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ++||+|||||++|+++|+.|++  .|++|+|+|+. .|        |.|....  ...      .+..            
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~~-~g--------G~~~~~~--~~~------~~~~------------   49 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGER-FG--------GQILDTV--DIE------NYIS------------   49 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSS-TT--------GGGGGCC--EEC------CBTT------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCC-CC--------ceecccc--ccc------cccC------------
Confidence            3799999999999999999999  78999999853 33        3332110  000      0000            


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CCeEEEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GRKFLLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~~  208 (481)
                                             ..+   .....+.+.+.+.+++.|++++.+++|+.+..+.+ ++.+.|.+++     
T Consensus        50 -----------------------~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~-----   98 (310)
T 1fl2_A           50 -----------------------VPK---TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETAS-----   98 (310)
T ss_dssp             -----------------------BSS---EEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETT-----
T ss_pred             -----------------------cCC---CCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECC-----
Confidence                                   000   01234566677778888999999999999975420 1367888765     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +.++.+|+||+|||+.+
T Consensus        99 g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           99 GAVLKARSIIVATGAKW  115 (310)
T ss_dssp             SCEEEEEEEEECCCEEE
T ss_pred             CCEEEeCEEEECcCCCc
Confidence            56799999999999753

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.90  E-value=3.9e-09  Score=109.21  Aligned_cols=54  Identities=15%  Similarity=0.251  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ...+.+.|.+.+.+  ++|+++++|++|+.++  +.+.|++.+     +.++.||+||+|+..
T Consensus       234 ~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~~~v~~~~-----g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          234 LQTLVEEIEKQLKL--TKVYKGTKVTKLSHSG--SCYSLELDN-----GVTLDADSVIVTAPH  287 (470)
T ss_dssp             THHHHHHHHHTCCS--EEEECSCCEEEEEECS--SSEEEEESS-----SCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHhcCC--CEEEeCCceEEEEEcC--CeEEEEECC-----CCEEECCEEEECCCH
Confidence            44555555554432  7999999999999875  568888875     567999999999974

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.90  E-value=9.4e-09  Score=104.93  Aligned_cols=63  Identities=19%  Similarity=0.173  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHh-CC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          161 SSSVIDCLLTEAKH-RG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       161 a~~~~~~l~~~~~~-~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ...+.+.|.+.+.+ .| ++|+++++|++++. +  +.+.|++.+..++...+++||.||.|+|..+.
T Consensus       106 r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~--~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          106 RGELQMILLAAVRERLGQQAVRTGLGVERIEE-R--DGRVLIGARDGHGKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-E--TTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-C--CccEEEEecCCCCCceEEecCEEEECCCccch
Confidence            45777888888876 36 58999999999987 5  44666665311122257999999999998764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.90  E-value=1.1e-09  Score=114.39  Aligned_cols=145  Identities=21%  Similarity=0.257  Sum_probs=80.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|+++|+.|++  .|++|+|||+ +.+|        |.|  .+..+.+...           +...  
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~~G--------G~~--~~~g~~psk~-----------ll~~--   59 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLG--------GVC--LNVGCIPSKA-----------LLHN--   59 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSS--------HHH--HHHSHHHHHH-----------HHHH--
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCC--------Cce--eeecccchHH-----------HHHH--
Confidence            46899999999999999999999  7999999997 4555        455  2222222111           1100  


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCC--eeeec-CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDG--RVFPV-SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR  204 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g--~~~p~-~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~  204 (481)
                        ....+..+++...|+++......  .+... ......+...+...+++.|++++.++.+. +  ++  +.+.|.+.+.
T Consensus        60 --~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~--~~v~v~~~~g  132 (482)
T 1ojt_A           60 --AAVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-L--DP--HHLEVSLTAG  132 (482)
T ss_dssp             --HHHHHHHHHGGGGTCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-E--ET--TEEEEEEEEE
T ss_pred             --HHHHHHHHHHHhCCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-c--cC--CEEEEEecCC
Confidence              00011223344455443211000  00000 00011233345566778899999988654 2  32  5566665430


Q ss_pred             -------ccCceEEEEcCeEEEccCCCh
Q 011610          205 -------TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       205 -------~~~~~~~i~ad~VIlAtG~~g  225 (481)
                             .++...++++|+||+|||+.+
T Consensus       133 ~~~~~~~~~g~~~~i~ad~lViAtGs~p  160 (482)
T 1ojt_A          133 DAYEQAAPTGEKKIVAFKNCIIAAGSRV  160 (482)
T ss_dssp             EETTEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred             cccccccccCcceEEEcCEEEECCCCCC
Confidence                   000115799999999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.89  E-value=9.5e-09  Score=107.48  Aligned_cols=60  Identities=13%  Similarity=0.066  Sum_probs=50.3

Q ss_pred             cCCChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          157 VSDSSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       157 ~~~~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      .......+.+.|.+.+.+.| ++|+++++|++|..++  +.+.|++.+     +.++.||+||+|+|.
T Consensus       250 ~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~--~~v~v~~~~-----g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          250 FKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNER--DAARVTARD-----GREFVAKRVVCTIPL  310 (495)
T ss_dssp             ETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECS--SSEEEEETT-----CCEEEEEEEEECCCG
T ss_pred             eCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC--CEEEEEECC-----CCEEEcCEEEECCCH
Confidence            34567788899999999998 9999999999998765  567787765     557999999999995

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.87  E-value=1.7e-08  Score=107.31  Aligned_cols=60  Identities=22%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             ChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +...+...|.+.+++. ||+++++ +|+++..++++..+.|++.+     +.++.||.||+|+|..+
T Consensus       192 ~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~-----G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          192 DAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTAT-----GRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             CHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETT-----SCEEECSEEEECCGGGC
T ss_pred             cHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECC-----CCEEECCEEEECCCCch
Confidence            5677889999999988 9999999 99999875412235677764     56799999999999754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.87  E-value=3.3e-09  Score=107.92  Aligned_cols=54  Identities=19%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             CCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhhh
Q 011610          422 ISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLK  477 (481)
Q Consensus       422 i~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~~  477 (481)
                      +|+.||+++.+||+|++|++.+... .. -.-+.|...|.++++++......+++.
T Consensus       276 VD~~tl~~t~~p~VfAiGDva~~~~-~p-k~a~~A~~qa~v~A~ni~~~l~G~~~~  329 (401)
T 3vrd_B          276 VDIRTFESSLQPGIHVIGDACNAAP-MP-KSAYSANSQAKVAAAAVVALLKGEEPG  329 (401)
T ss_dssp             BCTTTCBBSSSTTEEECGGGBCCTT-SC-BSHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ECCCcceecCCCCEEEecccccCCC-CC-chHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            5567899999999999995543211 11 234789999999999998887766553

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.87  E-value=4e-09  Score=110.00  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=34.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      ..++||+|||||++|++||+.|++  .|++|+|||++..|
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~--~G~~V~liE~~~~G   55 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAE--LGARAAVVESHKLG   55 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC
Confidence            346999999999999999999999  79999999988776

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.86  E-value=9.3e-09  Score=109.00  Aligned_cols=135  Identities=20%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|+++|+.|++  .|.+|+|||+. .+|        |.|+...            |+....+.... .
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~--~g~~v~iiE~~~~~G--------Gtw~~~~------------yPg~~~d~~~~-~   64 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQ--AGMKVLGIEAGEDVG--------GTWYWNR------------YPGCRLDTESY-A   64 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC--------THHHHCC------------CTTCBCSSCHH-H
T ss_pred             CCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCC--------CccccCC------------CCceeecCchh-h
Confidence            46899999999999999999999  78999999965 555        4443211            11111011000 0


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVEKRT  205 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~V~~~~~~  205 (481)
                      ..+      .+....--.+   .....|   .....+...+...+++.|+  .++++++|+++..+++++.|.|++++  
T Consensus        65 y~~------~f~~~~~~~~---~~~~~~---~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~--  130 (545)
T 3uox_A           65 YGY------FALKGIIPEW---EWSENF---ASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDN--  130 (545)
T ss_dssp             HCH------HHHTTSSTTC---CCSBSS---CBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETT--
T ss_pred             ccc------ccCcccccCC---CccccC---CCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECC--
Confidence            000      0000000000   001222   2456777888888888887  89999999999876423578898876  


Q ss_pred             cCceEEEEcCeEEEccCC
Q 011610          206 MNLVECIEADYLLIASGS  223 (481)
Q Consensus       206 ~~~~~~i~ad~VIlAtG~  223 (481)
                         +.+++||+||+|||.
T Consensus       131 ---G~~~~ad~lV~AtG~  145 (545)
T 3uox_A          131 ---EEVVTCRFLISATGP  145 (545)
T ss_dssp             ---TEEEEEEEEEECCCS
T ss_pred             ---CCEEEeCEEEECcCC
Confidence               678999999999994

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.86  E-value=1.1e-09  Score=113.58  Aligned_cols=140  Identities=21%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +++||+|||||++|++||..|++  .|++|+|+|+..+|        |.|  .+..+.+...+.           ...  
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~g--------G~~--~~~g~~p~k~l~-----------~~~--   56 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGNLG--------GVC--LNVGCIPSKALI-----------SAS--   56 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT--------HHH--HHTSHHHHHHHH-----------HHH--
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCC--------CcC--cCcCchhhHHHH-----------HHH--
Confidence            35899999999999999999999  68999999987654        555  233332211111           000  


Q ss_pred             cCChHHHHHHHHhcCCcceeec--CCeeeecC-CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610          129 LHGPMDTMSWFSDHGVELKTED--DGRVFPVS-DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT  205 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~--~g~~~p~~-~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~  205 (481)
                        ...+...++...|+......  ...+++.. .-...+.+.+.+.+++.|++++.++.+. +  +.  +.+.|.+.+  
T Consensus        57 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-i--d~--~~v~V~~~~--  127 (455)
T 1ebd_A           57 --HRYEQAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-V--DA--NTVRVVNGD--  127 (455)
T ss_dssp             --HHHHHHHTCGGGTEECCSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-E--ET--TEEEEEETT--
T ss_pred             --HHHHHHHHHHhcCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-c--cC--CeEEEEeCC--
Confidence              00011112222333211000  00000000 0011234455667778899999998654 3  32  557776654  


Q ss_pred             cCce-EEEEcCeEEEccCCCh
Q 011610          206 MNLV-ECIEADYLLIASGSSQ  225 (481)
Q Consensus       206 ~~~~-~~i~ad~VIlAtG~~g  225 (481)
                         + .++.+|+||+|||+.+
T Consensus       128 ---G~~~i~~d~lViATGs~p  145 (455)
T 1ebd_A          128 ---SAQTYTFKNAIIATGSRP  145 (455)
T ss_dssp             ---EEEEEECSEEEECCCEEE
T ss_pred             ---CcEEEEeCEEEEecCCCC
Confidence               4 6799999999999754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.85  E-value=6.9e-09  Score=107.42  Aligned_cols=71  Identities=15%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ..+.+.+.+.+++.|++++++++|.++..++ ++.+.|++.+     +.++.+|.||+|+|..+....+ ++.+|+++
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~-----g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~  279 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGSLTLELED-----GRSETVDCLIWAIGREPANDNINLEAAGVKT  279 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSCEEEEETT-----SCEEEESEEEECSCEEESCTTSCHHHHTCCB
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CcEEEEEECC-----CcEEEcCEEEECCCCCcCCCCCCchhcCceE
Confidence            4567778888889999999999999998754 3446777765     5689999999999976543223 45566654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.85  E-value=2.7e-09  Score=113.01  Aligned_cols=59  Identities=25%  Similarity=0.175  Sum_probs=48.1

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +...+...|.+.+++.|++++.+ +|+++..++ ++ .+.|++.+     +.+++||.||+|+|..+
T Consensus       163 ~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~g~~~~v~~~~-----g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          163 DAHLVADFLKRWAVERGVNRVVD-EVVDVRLNN-RGYISNLLTKE-----GRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEETT-----SCEECCSEEEECCGGGC
T ss_pred             eHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcC-CCcEEEEEECC-----CcEEEeCEEEECCCCch
Confidence            56788899999999999999999 899998764 33 35677664     45799999999999754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.84  E-value=2.1e-08  Score=105.88  Aligned_cols=59  Identities=12%  Similarity=0.106  Sum_probs=46.8

Q ss_pred             ChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ....+...|.+.+++ .|++++++ +|+++..++ ++ .+.|++.+     +.+++||.||.|+|.++
T Consensus       173 ~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~-~g~~~~v~~~~-----g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          173 NAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQ-HGDIEKLITKQ-----NGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             CHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECT-TSCEEEEEESS-----SCEEECSEEEECSGGGC
T ss_pred             cHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecC-CCcEEEEEECC-----CCEEEcCEEEECCCcch
Confidence            567788899999998 89999999 699998764 23 34666654     45699999999999754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.84  E-value=8e-09  Score=107.45  Aligned_cols=142  Identities=20%  Similarity=0.267  Sum_probs=79.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|+++|+.|++  .|++|+|+|+. .+|        |.|  .+..+.+...           +.... 
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~--~g~~V~liE~~~~~G--------G~~--~~~g~~p~k~-----------l~~~~-   60 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGALG--------GTC--LNVGCIPSKA-----------LLHSS-   60 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSC--------CSH--HHHSHHHHHH-----------HHHHH-
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcc--------ccc--cCcCccchHH-----------HHHHH-
Confidence            46899999999999999999999  68999999976 565        555  2322222111           11000 


Q ss_pred             hcCChHHHHHH-HHhcCCcceeec--CCeeeecC-CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610          128 SLHGPMDTMSW-FSDHGVELKTED--DGRVFPVS-DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       128 ~~~~~~~~~~~-~~~~Gi~~~~~~--~g~~~p~~-~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                      .   ..+.... +...|+......  ...+++.. .-...+...+.+.+++.|++++.++.+. +  +.  +.+.|.+.+
T Consensus        61 ~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~--~~~~v~~~~  132 (470)
T 1dxl_A           61 H---MYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SP--SEISVDTIE  132 (470)
T ss_dssp             H---HHHHHHHTHHHHTEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ET--TEEEECCSS
T ss_pred             H---HHHHHHHHHHhcCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cC--CEEEEEeCC
Confidence            0   0011111 233444311100  00000000 0011233345566677899999998664 3  32  556665543


Q ss_pred             cccCceEEEEcCeEEEccCCCh
Q 011610          204 RTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                         +....+++|+||+|||+.+
T Consensus       133 ---G~~~~i~~d~lIiAtGs~p  151 (470)
T 1dxl_A          133 ---GENTVVKGKHIIIATGSDV  151 (470)
T ss_dssp             ---SCCEEEECSEEEECCCEEE
T ss_pred             ---CceEEEEcCEEEECCCCCC
Confidence               1116799999999999754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.83  E-value=3.4e-08  Score=101.03  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ...+.+.+.+.+++.||+++++++|.++..++ +....|++.+     +.++.||.||+|+|..+.. .+++.+|+.+
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~v~l~d-----G~~i~aD~Vv~a~G~~p~~-~l~~~~gl~~  263 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG-TKVTGVRMQD-----GSVIPADIVIVGIGIVPCV-GALISAGASG  263 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESS-SBEEEEEESS-----SCEEECSEEEECSCCEESC-HHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecC-CcEEEEEeCC-----CCEEEcCEEEECCCCccCh-HHHHhCCCCc
Confidence            46777888889999999999999999998764 3445788876     6789999999999987653 4677777764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.82  E-value=4.2e-08  Score=102.44  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .++.+.+.+.+++.||+++++++|.+++.++ ++.+.|++.+...+...++.+|.||+|+|..+
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQD-DGKLLVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECT-TSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence            4566778888899999999999999998754 34566777652223345799999999999654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.80  E-value=4.2e-08  Score=103.34  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      .....+.+.|.+.+   |++|+++++|++|..++  +.+.|++.+     +.++.||+||+|++..
T Consensus       212 gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~--~~v~v~~~~-----g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          212 GGSGQVSERIMDLL---GDRVKLERPVIYIDQTR--ENVLVETLN-----HEMYEAKYVISAIPPT  267 (520)
T ss_dssp             TCTHHHHHHHHHHH---GGGEESSCCEEEEECSS--SSEEEEETT-----SCEEEESEEEECSCGG
T ss_pred             CCHHHHHHHHHHHc---CCcEEcCCeeEEEEECC--CeEEEEECC-----CeEEEeCEEEECCCHH
Confidence            34556666666544   78999999999998765  557787765     5689999999999853

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.80  E-value=1.2e-08  Score=106.03  Aligned_cols=138  Identities=22%  Similarity=0.245  Sum_probs=78.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ++||+|||||++|+++|+.|++  .|++|+|+|+...|        |.|  .+..+.+...+...     ..++      
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~g--------G~~--~~~g~~psk~ll~~-----~~~~------   59 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQ--LGLSTAIVEPKYWG--------GVC--LNVGCIPSKALLRN-----AELV------   59 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCTT--------HHH--HHHSHHHHHHHHHH-----HHHH------
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCC--------Ccc--cccCchhhHHHHHH-----HHHH------
Confidence            4799999999999999999999  78999999987554        444  22222221111100     0000      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCee-eecC-----CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRV-FPVS-----DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~-~p~~-----~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                         ..+...+...|+.   . .... ++..     .-...+...+.+.+++.|++++.++.+.   .+  .+.+.|.+.+
T Consensus        60 ---~~~~~~~~~~g~~---~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~---id--~~~v~V~~~~  127 (464)
T 2a8x_A           60 ---HIFTKDAKAFGIS---G-EVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF---AD--ANTLLVDLND  127 (464)
T ss_dssp             ---HHHHHHTTTTTEE---E-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE---SS--SSEEEEEETT
T ss_pred             ---HHHHHHHHhcCCC---C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ec--CCeEEEEeCC
Confidence               0011111222322   0 0000 0000     0011233445667778899999887654   23  3567776653


Q ss_pred             cccCceEEEEcCeEEEccCCCh
Q 011610          204 RTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                         +...++.+|+||+|||+.+
T Consensus       128 ---G~~~~~~~d~lViAtG~~~  146 (464)
T 2a8x_A          128 ---GGTESVTFDNAIIATGSST  146 (464)
T ss_dssp             ---SCCEEEEEEEEEECCCEEE
T ss_pred             ---CceEEEEcCEEEECCCCCC
Confidence               1116899999999999754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.79  E-value=4.7e-08  Score=98.87  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ...+.+.+.+.+++.|++++++++|.++..++  +.+.|++.+     +.++.+|.||+|+|..+.. .+++.+|+++
T Consensus       186 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~-----g~~i~~d~vv~a~G~~p~~-~l~~~~g~~~  255 (384)
T 2v3a_A          186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSD-----GEVIPCDLVVSAVGLRPRT-ELAFAAGLAV  255 (384)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEEEET--TEEEEEETT-----SCEEEESEEEECSCEEECC-HHHHHTTCCB
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC--CEEEEEECC-----CCEEECCEEEECcCCCcCH-HHHHHCCCCC
Confidence            45677888899999999999999999998764  567777765     5689999999999976653 3677888765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.79  E-value=1.3e-08  Score=105.96  Aligned_cols=141  Identities=19%  Similarity=0.192  Sum_probs=78.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ++||+|||||++|++||+.|++  .|++|+|+|+. .+|        |.|.  |..+.+...+           ....  
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~~G--------G~~~--~~g~~psk~l-----------~~~~--   56 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQ--LGMKTACVEKRGALG--------GTCL--NVGCIPSKAL-----------LHAT--   56 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSS--------HHHH--HHSHHHHHHH-----------HHHH--
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcC--------CcCC--CcCcHhHHHH-----------HHHH--
Confidence            5899999999999999999999  78999999976 565        5563  3222221111           1000  


Q ss_pred             cCChHHHHHH-HHhcCCcce-e--ecCCeeeecC-CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610          129 LHGPMDTMSW-FSDHGVELK-T--EDDGRVFPVS-DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEK  203 (481)
Q Consensus       129 ~~~~~~~~~~-~~~~Gi~~~-~--~~~g~~~p~~-~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~  203 (481)
                        ...+.... +...|++.. .  .+...++... .-...+...+.+.+++.|++++.++.+. +  +.  +.+.|.+.+
T Consensus        57 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~-i--~~--~~~~v~~~~  129 (468)
T 2qae_A           57 --HLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF-E--TA--HSIRVNGLD  129 (468)
T ss_dssp             --HHHHHHHHTHHHHTEECGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE-E--ET--TEEEEEETT
T ss_pred             --HHHHHHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-e--eC--CEEEEEecC
Confidence              00011111 233444320 0  0000000000 0001123334556677899999887553 3  22  556676643


Q ss_pred             cccCceEEEEcCeEEEccCCCh
Q 011610          204 RTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       204 ~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                         +....+.+|+||+|||+.+
T Consensus       130 ---G~~~~~~~d~lviAtG~~p  148 (468)
T 2qae_A          130 ---GKQEMLETKKTIIATGSEP  148 (468)
T ss_dssp             ---SCEEEEEEEEEEECCCEEE
T ss_pred             ---CceEEEEcCEEEECCCCCc
Confidence               1116799999999999754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.79  E-value=3.5e-08  Score=104.04  Aligned_cols=115  Identities=15%  Similarity=0.199  Sum_probs=81.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+||+|||||++|++||+.|++  .|++|+|+|+. .|        |.|..+.  ..+      .+..           
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~~-~G--------G~~~~~~--~~~------~~~~-----------  260 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGER-FG--------GQVLDTV--DIE------NYIS-----------  260 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS-TT--------GGGTTCS--CBC------CBTT-----------
T ss_pred             CcccEEEECCcHHHHHHHHHHHh--CCCeEEEEECC-CC--------Ccccccc--ccc------ccCC-----------
Confidence            46899999999999999999999  79999999952 33        4442111  000      0000           


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CCeEEEEEeecccC
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GRKFLLKVEKRTMN  207 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~  207 (481)
                       +                         | ......+.+.+.+.+++.|++++.+++|+.+..+.. ++.+.|.+.+    
T Consensus       261 -~-------------------------~-~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~----  309 (521)
T 1hyu_A          261 -V-------------------------P-KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETAS----  309 (521)
T ss_dssp             -B-------------------------S-SBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETT----
T ss_pred             -C-------------------------C-CCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECC----
Confidence             0                         0 012345666777788889999999999999975420 2367888765    


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                       +..+.+|+||+|||+.+
T Consensus       310 -g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          310 -GAVLKARSIIIATGAKW  326 (521)
T ss_dssp             -SCEEEEEEEEECCCEEE
T ss_pred             -CCEEEcCEEEECCCCCc
Confidence             56899999999999753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.79  E-value=1.2e-08  Score=106.53  Aligned_cols=37  Identities=27%  Similarity=0.344  Sum_probs=33.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      .++||+|||||++|+++|+.|++  .|.+|+|||++..|
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~~~G   46 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAAS--YGAKTLLVEAKALG   46 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TSCCEEEEESSCTT
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCCCcC
Confidence            46899999999999999999999  79999999987655

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.79  E-value=2.2e-08  Score=104.04  Aligned_cols=70  Identities=14%  Similarity=0.126  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE-EEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE-CIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~-~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ..+.+.+.+.+++.|++++++++|.++..++  +.+.|++.+     +. ++.+|.||+|+|..+....+ ++.+|+++
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~-----G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~  278 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALERDA--QGTTLVAQD-----GTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEV  278 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEEET--TEEEEEETT-----CCEEEEESEEEECSCEEESCTTSCHHHHTCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CeEEEEEeC-----CcEEEEcCEEEECCCCCcCCCCCCchhcCCcc
Confidence            4566778888899999999999999998754  446777765     55 79999999999976543222 45556554

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.78  E-value=5e-08  Score=103.83  Aligned_cols=75  Identities=20%  Similarity=0.228  Sum_probs=49.8

Q ss_pred             HHHHHHHhCCCEEEcCceEEEEEec----CCCCeEEEEEeecccCceEEEEcC-eEEEccCCChhH----------HHHH
Q 011610          167 CLLTEAKHRGVVLQTGKVVTTASSD----NAGRKFLLKVEKRTMNLVECIEAD-YLLIASGSSQQG----------HRLA  231 (481)
Q Consensus       167 ~l~~~~~~~Gv~i~~~~~V~~i~~~----~~~~~~~V~~~~~~~~~~~~i~ad-~VIlAtG~~g~g----------~~la  231 (481)
                      .|...+.+.+++|++++.|++|..+    + +...+|+..+ ..+...++.|+ -||+|+|+-++-          ...+
T Consensus       232 yL~p~~~r~NL~V~t~a~V~rIl~d~~~~~-~ra~GV~~~~-~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L  309 (583)
T 3qvp_A          232 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTT-PRAVGVEFGT-HKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSIL  309 (583)
T ss_dssp             HTTTTTTCTTEEEECSCEEEEEEEECSSSS-CEEEEEEEES-STTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHH
T ss_pred             HHHHhhcCCCcEEEcCCEEEEEEeccCCCC-CEEEEEEEEe-cCCcEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHH
Confidence            3433445679999999999999886    3 3456777652 13334678897 599999974331          2456


Q ss_pred             HHcCCCcccCCC
Q 011610          232 AQLGHSIVDPVP  243 (481)
Q Consensus       232 ~~~G~~i~~~~p  243 (481)
                      +++|+++..-.|
T Consensus       310 ~~~GI~vv~dLP  321 (583)
T 3qvp_A          310 EPLGIDTVVDLP  321 (583)
T ss_dssp             GGGTCCCSBCCC
T ss_pred             HhCCCCceeeCc
Confidence            677877653333

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.78  E-value=1.7e-09  Score=108.56  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=33.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      +++||+|||||++|+++|++|++  .|.+|+|||+..++
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~--~G~~V~vle~~~~~   41 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLPE   41 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccCCC
Confidence            46899999999999999999999  79999999987655

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.78  E-value=7.5e-09  Score=104.88  Aligned_cols=54  Identities=15%  Similarity=0.016  Sum_probs=41.8

Q ss_pred             CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          175 RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       175 ~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      .+..|+++++|++++..+ ++.+.|++.+     +.+++||.||.|+|..+.   +-+.++..
T Consensus       122 ~~~~v~~~~~v~~~~~~~-~~~v~v~~~d-----G~~~~adlvVgADG~~S~---vR~~l~~~  175 (412)
T 4hb9_A          122 LANTIQWNKTFVRYEHIE-NGGIKIFFAD-----GSHENVDVLVGADGSNSK---VRKQYLPF  175 (412)
T ss_dssp             CTTTEECSCCEEEEEECT-TSCEEEEETT-----SCEEEESEEEECCCTTCH---HHHHHSTT
T ss_pred             ccceEEEEEEEEeeeEcC-CCeEEEEECC-----CCEEEeeEEEECCCCCcc---hHHHhCCC
Confidence            456799999999998765 4678888887     778999999999998763   34444443

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.78  E-value=8.2e-09  Score=107.37  Aligned_cols=37  Identities=38%  Similarity=0.527  Sum_probs=33.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g   87 (481)
                      +++||+|||||++|++||+.|++  .|++|+||| ++.+|
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~~~G   40 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKGELG   40 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCC
Confidence            35899999999999999999999  799999999 55665

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.78  E-value=4.1e-08  Score=100.07  Aligned_cols=71  Identities=13%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ...+.+.+.+.+++.||+++++++|.++..++ +....|++.+     +.++.||.||+|+|..+.. .+++.+|+.+
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~V~~~d-----G~~i~aD~Vv~a~G~~p~~-~l~~~~gl~~  253 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEG-DRVTGVVLSD-----GNTLPCDLVVVGVGVIPNV-EIAAAAGLPT  253 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETT-----SCEEECSEEEECCCEEECC-HHHHHTTCCB
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEecC-CcEEEEEeCC-----CCEEEcCEEEECcCCccCH-HHHHhCCCCC
Confidence            45677888889999999999999999998764 3445677776     6789999999999976543 4677788765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.77  E-value=7e-08  Score=99.87  Aligned_cols=82  Identities=9%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             HHHHHHhcCCcceee-cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEE
Q 011610          135 TMSWFSDHGVELKTE-DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIE  213 (481)
Q Consensus       135 ~~~~~~~~Gi~~~~~-~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~  213 (481)
                      +...+...|.+...- ...++.|. .-...+.+.+.+.+++.||+++++++|++++..+  +.+.|.+++     + ++.
T Consensus       162 ~A~~l~~~g~~Vtlv~~~~~~l~~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~v~~~~-----g-~i~  232 (452)
T 3oc4_A          162 AIDFLVKMKKTVHVFESLENLLPK-YFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETA--NGIVLETSE-----Q-EIS  232 (452)
T ss_dssp             HHHHHHHTTCEEEEEESSSSSSTT-TCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECS--SCEEEEESS-----C-EEE
T ss_pred             HHHHHHhCCCeEEEEEccCccccc-cCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccC--CeEEEEECC-----C-EEE
Confidence            334455566554432 22233321 1246677888899999999999999999998654  445677764     4 899


Q ss_pred             cCeEEEccCCCh
Q 011610          214 ADYLLIASGSSQ  225 (481)
Q Consensus       214 ad~VIlAtG~~g  225 (481)
                      +|.||+|+|..+
T Consensus       233 aD~Vv~A~G~~p  244 (452)
T 3oc4_A          233 CDSGIFALNLHP  244 (452)
T ss_dssp             ESEEEECSCCBC
T ss_pred             eCEEEECcCCCC
Confidence            999999999654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.77  E-value=1.2e-08  Score=106.40  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=32.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ++|||+|||||++|++||+.|++  .|++|+|||+..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh--CCCEEEEEeCCC
Confidence            46999999999999999999999  689999999763

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.77  E-value=7.9e-09  Score=109.00  Aligned_cols=150  Identities=17%  Similarity=0.193  Sum_probs=78.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ...|||+|||||++|++||+.|++  .|.+|+|||+..... .....-||.|  .|..+.+..           .+....
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc--~~~GciPsk-----------~l~~~~   94 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVTPTPLGTRWGLGGTC--VNVGCIPKK-----------LMHQAA   94 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTCHH--HHHSHHHHH-----------HHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccccccCCCccccc--CCcCccchH-----------HHHHHH
Confidence            346899999999999999999999  799999999743110 0000013556  333333311           111110


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecC-CChH----HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEE
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSSS----SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKV  201 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a~----~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~  201 (481)
                          ........+..+|+...... ..-++.- ....    .+...+...++..+|+++.+. +..+.  .  ..+.|.+
T Consensus        95 ----~~~~~~~~~~~~g~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d--~--~~v~v~~  164 (519)
T 3qfa_A           95 ----LLGQALQDSRNYGWKVEETV-KHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIG--P--HRIKATN  164 (519)
T ss_dssp             ----HHHHHHHHHHHTTBCCCSSC-CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE--T--TEEEEEC
T ss_pred             ----HHHHHHHHHHhcCcccCCcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee--C--CEEEEEc
Confidence                01122233445554332110 0000000 0001    112223345567899998764 43332  2  4455554


Q ss_pred             eecccCceEEEEcCeEEEccCCCh
Q 011610          202 EKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       202 ~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .+   +...++.+|+||+|||+.+
T Consensus       165 ~~---g~~~~i~~d~lViATGs~p  185 (519)
T 3qfa_A          165 NK---GKEKIYSAERFLIATGERP  185 (519)
T ss_dssp             TT---CCCCEEEEEEEEECCCEEE
T ss_pred             CC---CCEEEEECCEEEEECCCCc
Confidence            32   1224799999999999754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.76  E-value=3e-08  Score=104.06  Aligned_cols=72  Identities=17%  Similarity=0.185  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEE-EEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVEC-IEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~-i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ...+.+.+.+.+++.||+++++++|+++..++ ++.+.|++.+     +.+ +.+|.||+|+|..+....+ ++.+|+++
T Consensus       216 d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~-----g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~  289 (500)
T 1onf_A          216 DESVINVLENDMKKNNINIVTFADVVEIKKVS-DKNLSIHLSD-----GRIYEHFDHVIYCVGRSPDTENLKLEKLNVET  289 (500)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTCEEEEETT-----SCEEEEESEEEECCCBCCTTTTSSCTTTTCCB
T ss_pred             chhhHHHHHHHHHhCCCEEEECCEEEEEEEcC-CceEEEEECC-----CcEEEECCEEEECCCCCcCCCCCCchhcCccc
Confidence            35667788888999999999999999998754 3446677664     455 9999999999976643223 34455543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.76  E-value=1e-08  Score=106.90  Aligned_cols=140  Identities=22%  Similarity=0.313  Sum_probs=78.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|+++|+.|++  .|++|+|+|+ +.+|        |.|  .+..+.+...+..           .. 
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~G--------G~~--~~~g~~psk~l~~-----------~~-   59 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKLG--------GTC--LNVGCIPSKALLN-----------NS-   59 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSS--------HHH--HHHSHHHHHHHHH-----------HH-
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCcC--------Ccc--ceeccHHHHHHHH-----------HH-
Confidence            35899999999999999999999  6899999997 4555        555  2322222111110           00 


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCC-------ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSD-------SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK  200 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~-------~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~  200 (481)
                      ..+  ..+...+...|++..   ....++...       -...+...+.+.+++.|++++.++.+..   +  .+.+.|.
T Consensus        60 ~~~--~~~~~~~~~~gi~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~--~~~v~V~  129 (478)
T 1v59_A           60 HLF--HQMHTEAQKRGIDVN---GDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---D--ETKIRVT  129 (478)
T ss_dssp             HHH--HHHHHTSGGGTEEEC---SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---S--SSEEEEE
T ss_pred             HHH--HHHHHHHHhcCcccC---CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---c--CCeEEEE
Confidence            000  011111222333221   001110000       0012233455667788999999987652   3  3566676


Q ss_pred             EeecccCceEE------EEcCeEEEccCCCh
Q 011610          201 VEKRTMNLVEC------IEADYLLIASGSSQ  225 (481)
Q Consensus       201 ~~~~~~~~~~~------i~ad~VIlAtG~~g  225 (481)
                      +.+   +...+      +.+|+||+|||+.+
T Consensus       130 ~~~---G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A          130 PVD---GLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             CCT---TCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             ecC---CCcccccccceEEeCEEEECcCCCC
Confidence            543   11135      99999999999754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.74  E-value=2.8e-08  Score=103.88  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      +.+|||+|||||++|++||+.|++  .|.+|+|||+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~--~G~~V~liEk   37 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQ--LGKKVAVADY   37 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEEe
Confidence            357999999999999999999999  7899999996

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.74  E-value=2e-08  Score=105.27  Aligned_cols=38  Identities=32%  Similarity=0.423  Sum_probs=33.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~~~g   87 (481)
                      ++||+|||||++|++||+.|++..+ |++|+|||+..+|
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~~G   40 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIG   40 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCCcC
Confidence            5899999999999999999999322 8999999987665

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.74  E-value=3e-08  Score=103.85  Aligned_cols=74  Identities=8%  Similarity=0.041  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ...+.+.+.+.+++. |+++++++|.+++.++  +.+.+++.+ .++...++.+|.||+|+|..+....+ ++.+|+++
T Consensus       214 d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~--~~v~v~~~~-~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~  288 (492)
T 3ic9_A          214 DEEMKRYAEKTFNEE-FYFDAKARVISTIEKE--DAVEVIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSIEL  288 (492)
T ss_dssp             CHHHHHHHHHHHHTT-SEEETTCEEEEEEECS--SSEEEEEEC-TTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCB
T ss_pred             CHHHHHHHHHHHhhC-cEEEECCEEEEEEEcC--CEEEEEEEe-CCCceEEEECCEEEEeeCCccCCCCCChhhcCCEE
Confidence            356677777888877 9999999999998765  456666642 11222689999999999976532111 34455543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.73  E-value=7.8e-08  Score=99.59  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=51.9

Q ss_pred             CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEe-cCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610          152 GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASS-DNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       152 g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~  224 (481)
                      ...||... ...+.++|.+.+++.|++|+++++|++|.. ++ +..++|++.+     ++++.||.||.|+|-.
T Consensus       247 ~~~yp~gG-~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~-g~v~gV~~~~-----G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          247 PFIYPLYG-LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD-NKVCGIKSSD-----GEIAYCDKVICDPSYV  313 (475)
T ss_dssp             SEEEETTC-TTHHHHHHHHHHHHC--CEESSCCEEEEEECTT-SCEEEEEETT-----SCEEEEEEEEECGGGC
T ss_pred             ceEEECCC-HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecC-CeEEEEEECC-----CcEEECCEEEECCCcc
Confidence            35677654 467899999999999999999999999998 44 4557888875     6689999999998743

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.72  E-value=9.9e-08  Score=99.26  Aligned_cols=71  Identities=25%  Similarity=0.370  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      ...+.+.+.+.+++.||+++++++|.+++.++  +.+.|.+.+     +.++.+|.||+|+|..+.. .+++.+|+++.
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~v~~~~-----g~~i~aD~Vv~a~G~~p~~-~l~~~~gl~~~  271 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN--GKVARVITD-----KRTLDADLVILAAGVSPNT-QLARDAGLELD  271 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEES-----SCEEECSEEEECSCEEECC-HHHHHHTCCBC
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC--CeEEEEEeC-----CCEEEcCEEEECCCCCcCH-HHHHhCCccCC
Confidence            45677888889999999999999999998754  556677765     5689999999999976643 36677887653

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.72  E-value=6e-08  Score=105.22  Aligned_cols=76  Identities=9%  Similarity=0.180  Sum_probs=53.9

Q ss_pred             ChHHHHHHHHHHHHhCC---CEEEcCceEEEEEecC------CCCeEEEEEeec--------------------------
Q 011610          160 SSSSVIDCLLTEAKHRG---VVLQTGKVVTTASSDN------AGRKFLLKVEKR--------------------------  204 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~~------~~~~~~V~~~~~--------------------------  204 (481)
                      ....+.+.|.+.+.+.|   ++|+++++|++++.++      ++..+.|++.+.                          
T Consensus       117 ~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  196 (665)
T 1pn0_A          117 HQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQ  196 (665)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHH
T ss_pred             eHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEeccccccccccccccccccccccccccc
Confidence            45677788888888877   9999999999998753      013466665431                          


Q ss_pred             -------------ccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          205 -------------TMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       205 -------------~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                                   ..+...+++||+||.|+|+.+.   +.+.+|+..
T Consensus       197 ~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~---VR~~lg~~~  240 (665)
T 1pn0_A          197 EEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSW---VRRTLGFEM  240 (665)
T ss_dssp             HHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCH---HHHHHTCCC
T ss_pred             ccccccccccccCCCCceEEEEeCEEEeccCCCCH---HHHhcCCCC
Confidence                         1122367999999999998763   455567653

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.71  E-value=1.4e-07  Score=97.69  Aligned_cols=65  Identities=8%  Similarity=0.052  Sum_probs=52.1

Q ss_pred             eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEec--CCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          153 RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSD--NAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       153 ~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..||.. ....+.++|.+.+++.|++|+++++|++|..+  + +..+.|+++      +.++.||.||+|+|.++
T Consensus       234 ~~~p~g-G~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~-~~~~~V~~~------g~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          234 YLYPMY-GLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT-GKFEGVKTK------LGTFKAPLVIADPTYFP  300 (453)
T ss_dssp             EEEETT-CTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTT-TEEEEEEET------TEEEECSCEEECGGGCG
T ss_pred             eEeeCC-CHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCC-CeEEEEEEC------CeEEECCEEEECCCccc
Confidence            446643 45688999999999999999999999999876  5 344566664      57899999999999764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.71  E-value=3e-08  Score=103.24  Aligned_cols=139  Identities=20%  Similarity=0.259  Sum_probs=79.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      ++++||+|||||++|++||..|++  .|++|+|||+. .+|        |.|  .+..+.+...           +....
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~~G--------G~~--~~~g~~Psk~-----------l~~~~   60 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQ--LGFKTVCIEKNETLG--------GTC--LNVGCIPSKA-----------LLNNS   60 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSS--------HHH--HHHSHHHHHH-----------HHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCcC--------Ccc--cccCccchHH-----------HHHHH
Confidence            356899999999999999999999  68999999976 565        555  3322222111           11000


Q ss_pred             HhcCChHHHHH--HHHhcCCcceeecCCeeeecCC---C----hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE
Q 011610          127 FSLHGPMDTMS--WFSDHGVELKTEDDGRVFPVSD---S----SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF  197 (481)
Q Consensus       127 l~~~~~~~~~~--~~~~~Gi~~~~~~~g~~~p~~~---~----a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~  197 (481)
                       .   ......  .+...|++..    ...++...   .    ...+...+.+.+++.|++++.++.+ .+  +.  +.+
T Consensus        61 -~---~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~~  127 (474)
T 1zmd_A           61 -H---YYHMAHGTDFASRGIEMS----EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-IT--GK--NQV  127 (474)
T ss_dssp             -H---HHHHHHSSHHHHTTEEES----CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EE--ET--TEE
T ss_pred             -H---HHHHhhhhhHhhCccccC----CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--cC--CEE
Confidence             0   001111  2334454311    11111000   0    0112223456667889999988653 33  22  556


Q ss_pred             EEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          198 LLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       198 ~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .|.+.+   ++..++.+|+||+|||+.+
T Consensus       128 ~v~~~~---gg~~~~~~d~lViAtGs~p  152 (474)
T 1zmd_A          128 TATKAD---GGTQVIDTKNILIATGSEV  152 (474)
T ss_dssp             EEECTT---SCEEEEEEEEEEECCCEEE
T ss_pred             EEEecC---CCcEEEEeCEEEECCCCCC
Confidence            665542   1125799999999999754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.71  E-value=1e-07  Score=97.34  Aligned_cols=69  Identities=22%  Similarity=0.174  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ..+.+.+.+.+++.||+++++++|.++..++  ....|++.+     +.++.||.||+|+|..+.. .+++.+|+++
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~~~v~~~d-----g~~i~aD~Vv~a~G~~p~~-~l~~~~gl~~  253 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEG--QLEQVMASD-----GRSFVADSALICVGAEPAD-QLARQAGLAC  253 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECSS--SCCEEEETT-----SCEEECSEEEECSCEEECC-HHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEeccC--cEEEEEECC-----CCEEEcCEEEEeeCCeecH-HHHHhCCCcc
Confidence            4566778888889999999999999998653  555777776     6789999999999976642 4678888765

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.68  E-value=1.8e-09  Score=107.77  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      +...++..|.+.+++.|++|+. ++|++++..+                  .++||.||+|+|.+.
T Consensus       140 ~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~------------------~~~a~~VV~A~G~~s  186 (351)
T 3g3e_A          140 EGKNYLQWLTERLTERGVKFFQ-RKVESFEEVA------------------REGADVIVNCTGVWA  186 (351)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH------------------HTTCSEEEECCGGGG
T ss_pred             cHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh------------------cCCCCEEEECCCcCh
Confidence            5678899999999999999988 8887764321                  157999999999875

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.67  E-value=4.7e-08  Score=102.33  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=29.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      .++||+|||||++|++||+.|++. .|++|+|||
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASL-HKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHH-cCCEEEEEe
Confidence            368999999999999999999982 278999999

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.67  E-value=8.5e-08  Score=99.61  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ....+.+.|.+.+.+  ++|+++++|++|+.++  +.+.|++.+     + ++.||+||+|++.
T Consensus       234 G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~~~v~~~~-----g-~~~ad~vV~a~p~  287 (475)
T 3lov_A          234 GLESLIERLEEVLER--SEIRLETPLLAISRED--GRYRLKTDH-----G-PEYADYVLLTIPH  287 (475)
T ss_dssp             CHHHHHHHHHHHCSS--CEEESSCCCCEEEEET--TEEEEECTT-----C-CEEESEEEECSCH
T ss_pred             hHHHHHHHHHhhccC--CEEEcCCeeeEEEEeC--CEEEEEECC-----C-eEECCEEEECCCH
Confidence            344556666555433  7999999999998875  668887765     5 7999999999985

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.66  E-value=3e-08  Score=102.74  Aligned_cols=36  Identities=33%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ++||+|||||++|++||..|++  .|++|+|+|+. .+|
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~~~G   37 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQ--LGMKVGVVEKEKALG   37 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHH--CCCeEEEEeCCCCCC
Confidence            3799999999999999999999  68999999976 665

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.66  E-value=5.9e-08  Score=100.63  Aligned_cols=37  Identities=30%  Similarity=0.457  Sum_probs=33.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      .++||+|||||++|++||..|++  .|++|+|+|++.+|
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~~G   40 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQALG   40 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEccCCCC
Confidence            46899999999999999999999  68999999997665

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.66  E-value=4.4e-08  Score=103.13  Aligned_cols=40  Identities=15%  Similarity=0.405  Sum_probs=35.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCC-CcEEEEe-CCCCCCce
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIE-KGKPLSKV   90 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE-~~~~g~k~   90 (481)
                      ..+||+|||||++||+||+.|++  .| .+|+|+| ++.+|+.+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~--~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQ--NGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHH--TTCCSEEEECSSSSSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCCCCCCce
Confidence            35799999999999999999999  78 9999999 56888644

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.65  E-value=3.8e-09  Score=106.86  Aligned_cols=138  Identities=15%  Similarity=0.173  Sum_probs=79.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CC---CCceEEecCCceeeccCCCcchhHHh-hccCCCChhchhh
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KP---LSKVKISGGGRCNVTNGHCADKMILA-GHYPRGHKEFRGS  125 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~---g~k~~~sG~g~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~  125 (481)
                      +||+|||||++|+++|+.|++.++|.+|+|+|+. .+   |..+.+++++..    . ..+. .+. ..     . +   
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~----~-~~~~-~~~~~~-----~-~---   65 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQ----H-PANP-LSYLDA-----P-E---   65 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTT----C-TTCG-GGGSSC-----G-G---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHH----h-hcCc-chhhhh-----h-H---
Confidence            4899999999999999999993239999999964 33   444444443322    0 0000 000 00     0 0   


Q ss_pred             HHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610          126 FFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT  205 (481)
Q Consensus       126 ~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~  205 (481)
                       ...+...+...++. .|..+. ...+..|+ ......+.+.|.+.+++.|++++++++|++++..          .   
T Consensus        66 -~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~-~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~----------~---  128 (381)
T 3c4a_A           66 -RLNPQFLEDFKLVH-HNEPSL-MSTGVLLC-GVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL----------P---  128 (381)
T ss_dssp             -GGCCEEECCEEEEE-SSSEEE-CCCCSCEE-EEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC----------C---
T ss_pred             -HHhhccccceEEEe-CCeeEE-ecCCCcee-eecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc----------c---
Confidence             00000000000000 121111 11122222 2346788899999999999999999999887421          1   


Q ss_pred             cCceEEEEcCeEEEccCCCh
Q 011610          206 MNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       206 ~~~~~~i~ad~VIlAtG~~g  225 (481)
                           .+.||.||.|+|..+
T Consensus       129 -----~~~ad~vV~AdG~~S  143 (381)
T 3c4a_A          129 -----LADYDLVVLANGVNH  143 (381)
T ss_dssp             -----GGGCSEEEECCGGGG
T ss_pred             -----cccCCEEEECCCCCc
Confidence                 146899999999765

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.65  E-value=3.7e-08  Score=102.36  Aligned_cols=37  Identities=27%  Similarity=0.403  Sum_probs=33.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      .++||+|||||++|+++|+.|++  .|++|+|||++.+|
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~G   39 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERGTIG   39 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCC
Confidence            46899999999999999999999  78999999987766

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.62  E-value=1.8e-08  Score=104.65  Aligned_cols=36  Identities=36%  Similarity=0.467  Sum_probs=33.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      ++||+|||||++|++||..|++  .|.+|+|+|+...|
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~--~g~~V~lie~~~~G   41 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQ--LGLKVLAVEAGEVG   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence            5899999999999999999999  78999999987665

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.62  E-value=3e-07  Score=93.92  Aligned_cols=38  Identities=16%  Similarity=0.358  Sum_probs=34.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeC-CCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEK-GKPLS   88 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~-~~~g~   88 (481)
                      ..+||+|||||++|++||+.|++  .| .+|+|+|+ +.+|+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~--~g~~~v~v~E~~~~~GG   44 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQ--AGFHDYTILERTDHVGG   44 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSSCSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEECCCCCCC
Confidence            56899999999999999999999  78 89999995 57774

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.62  E-value=4e-07  Score=94.95  Aligned_cols=58  Identities=12%  Similarity=0.088  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      +....+.+.|.+.+.+  .+|+++++|++|..++  +.+.|++.+.  +...+++||+||+|+.
T Consensus       236 gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~v~v~~~~g--~~~~~~~ad~vI~a~p  293 (489)
T 2jae_A          236 GGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNVS--EGVTVEYTAG--GSKKSITADYAICTIP  293 (489)
T ss_dssp             TCTTHHHHHHHHHHCG--GGEETTCEEEEEEEET--TEEEEEEEET--TEEEEEEESEEEECSC
T ss_pred             CCHHHHHHHHHHhcCC--CeEEECCEEEEEEEcC--CeEEEEEecC--CeEEEEECCEEEECCC
Confidence            4456677777776543  6899999999999875  6677877640  1126799999999996

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.62  E-value=7.5e-08  Score=100.87  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=29.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhc-cCCCCcEEEEe
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKT-VAPKLNVVIIE   82 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~-~~~g~~V~llE   82 (481)
                      .++||+|||||++|++||+.|++ .  |++|+|||
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~--G~~V~liE   38 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLY--GKRVAVVD   38 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHH--CCCEEEEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhc--CCeEEEEe
Confidence            46899999999999999999998 5  78999999

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.59  E-value=6.4e-07  Score=95.28  Aligned_cols=66  Identities=9%  Similarity=0.024  Sum_probs=45.7

Q ss_pred             HhCCCEEEcCceEEEEEec--CCCCeEEEEEeecccCceEEEEc-CeEEEccCCChh---------H-HHHHHHcCCCcc
Q 011610          173 KHRGVVLQTGKVVTTASSD--NAGRKFLLKVEKRTMNLVECIEA-DYLLIASGSSQQ---------G-HRLAAQLGHSIV  239 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~--~~~~~~~V~~~~~~~~~~~~i~a-d~VIlAtG~~g~---------g-~~la~~~G~~i~  239 (481)
                      .+.+++|++++.|++|..+  + +...+|++.+ ..+...++.| +-||+|+|+-.+         | ...++++|+++.
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~-~~a~GV~~~~-~~g~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv  294 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEAD-RTCKGVTVVT-AAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTI  294 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTT-TEEEEEEEEE-TTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCS
T ss_pred             cCCCeEEEcCcEEEEEEEeCCC-CEEEEEEEEe-CCCcEEEEEeeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCee
Confidence            3568999999999999987  3 3456777764 1233457888 459999996322         1 345678888765


Q ss_pred             c
Q 011610          240 D  240 (481)
Q Consensus       240 ~  240 (481)
                      .
T Consensus       295 ~  295 (577)
T 3q9t_A          295 V  295 (577)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.58  E-value=6.1e-07  Score=95.34  Aligned_cols=71  Identities=23%  Similarity=0.327  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEec------------------CCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSD------------------NAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~------------------~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      ...+.+.+.+.+++.||+++++++|.++..+                  + ++.+.+.+.+     +.++.+|.||+|+|
T Consensus       191 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~-----g~~i~~D~vi~a~G  264 (565)
T 3ntd_A          191 DREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI-KGHLSLTLSN-----GELLETDLLIMAIG  264 (565)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCT-TCEEEEEETT-----SCEEEESEEEECSC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccC-CCcEEEEEcC-----CCEEEcCEEEECcC
Confidence            4567778888899999999999999999862                  2 2556666654     56899999999999


Q ss_pred             CChhHHHHHHHcCCCc
Q 011610          223 SSQQGHRLAAQLGHSI  238 (481)
Q Consensus       223 ~~g~g~~la~~~G~~i  238 (481)
                      ..+.. .+++.+|+.+
T Consensus       265 ~~p~~-~l~~~~g~~~  279 (565)
T 3ntd_A          265 VRPET-QLARDAGLAI  279 (565)
T ss_dssp             EEECC-HHHHHHTCCB
T ss_pred             Cccch-HHHHhCCccc
Confidence            76653 3567777665

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.56  E-value=5.1e-07  Score=93.03  Aligned_cols=38  Identities=24%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSK   89 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k   89 (481)
                      ++||+|||||++|++||+.|++  .|.+|+|+|+ +.+|+.
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG~   43 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRK--AGLSVAVIEARDRVGGR   43 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCCCCCc
Confidence            5799999999999999999999  7899999995 467743

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.56  E-value=4.5e-08  Score=91.81  Aligned_cols=37  Identities=19%  Similarity=0.253  Sum_probs=33.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      |.+||+||||||+||+||+.|++  .|++|+||||. .+|
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~--~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSRGSG   38 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCC
Confidence            46899999999999999999999  79999999965 565

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.55  E-value=1.3e-07  Score=97.76  Aligned_cols=36  Identities=36%  Similarity=0.633  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ++||+|||||++|+++|+.|++.+++.+|+|+|+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~   38 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATE   38 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            479999999999999999999865589999999754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.54  E-value=3.3e-07  Score=99.95  Aligned_cols=57  Identities=11%  Similarity=0.165  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          164 VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       164 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ....+.+.+++.||+|+++++|+++..+    ...+...  ..+.+.++.+|.||+|+|..+.
T Consensus       569 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~----~~~v~~~--~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          569 EVNRIQRRLIENGVARVTDHAVVAVGAG----GVTVRDT--YASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             CHHHHHHHHHHTTCEEEESEEEEEEETT----EEEEEET--TTCCEEEEECSEEEEESCEEEC
T ss_pred             hHHHHHHHHHHCCCEEEcCcEEEEEECC----eEEEEEc--cCCeEEEEECCEEEECCCCCCC
Confidence            3566778888999999999999999742    2334322  1223578999999999996543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.52  E-value=2.2e-07  Score=95.58  Aligned_cols=110  Identities=18%  Similarity=0.256  Sum_probs=69.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      +.+||+|||||++|+++|..|++  .|.  +|+|+|+.....      ..++.+.           ..+.....      
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~--~g~~~~V~lie~~~~~~------~~~~~l~-----------~~~~~~~~------   57 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRA--SGWEGNIRLVGDATVIP------HHLPPLS-----------KAYLAGKA------   57 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSCCSCC------BCSGGGG-----------TTTTTTCS------
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHc--cCcCCCEEEEECCCCCC------CcCCCCc-----------HHHhCCCC------
Confidence            45899999999999999999999  566  799999653210      0111100           00100000      


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                          ...+                  ..+           .+.+.+++.|++++.+++|+.+..++  .  .|.+.+   
T Consensus        58 ----~~~~------------------~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~--~--~v~~~~---   97 (431)
T 1q1r_A           58 ----TAES------------------LYL-----------RTPDAYAAQNIQLLGGTQVTAINRDR--Q--QVILSD---   97 (431)
T ss_dssp             ----CSGG------------------GBS-----------SCHHHHHHTTEEEECSCCEEEEETTT--T--EEEETT---
T ss_pred             ----ChHH------------------hcc-----------cCHHHHHhCCCEEEeCCEEEEEECCC--C--EEEECC---
Confidence                0000                  000           01123456799999999999998653  3  456654   


Q ss_pred             CceEEEEcCeEEEccCCCh
Q 011610          207 NLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g  225 (481)
                        +.++.+|+||+|||+.+
T Consensus        98 --g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           98 --GRALDYDRLVLATGGRP  114 (431)
T ss_dssp             --SCEEECSEEEECCCEEE
T ss_pred             --CCEEECCEEEEcCCCCc
Confidence              56799999999999754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.52  E-value=3.2e-07  Score=98.08  Aligned_cols=119  Identities=19%  Similarity=0.307  Sum_probs=73.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .+++||+|||||++|++||+.|++.+++.+|+|||+.....      -..|.+      +                 ..+
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~------~~~~~l------p-----------------~~~   84 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS------FANCGL------P-----------------YYI   84 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS------BCGGGH------H-----------------HHH
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc------ccCCCC------c-----------------hhh
Confidence            34689999999999999999999955589999999764320      000100      0                 000


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                      .              |.         ..+   ....+...+...+++.|++++++++|+++..++  +.+.+...  ..+
T Consensus        85 ~--------------g~---------~~~---~~~~~~~~~~~~~~~~gi~v~~~~~V~~id~~~--~~v~v~~~--~~g  134 (588)
T 3ics_A           85 G--------------GV---------ITE---RQKLLVQTVERMSKRFNLDIRVLSEVVKINKEE--KTITIKNV--TTN  134 (588)
T ss_dssp             T--------------TS---------SCC---GGGGBSSCHHHHHHHTTCEEECSEEEEEEETTT--TEEEEEET--TTC
T ss_pred             c--------------Cc---------CCC---hHHhhccCHHHHHHhcCcEEEECCEEEEEECCC--CEEEEeec--CCC
Confidence            0              00         000   000011122334456799999999999998764  55555431  112


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                      ....+.+|+||+|||+.+
T Consensus       135 ~~~~~~~d~lviAtG~~p  152 (588)
T 3ics_A          135 ETYNEAYDVLILSPGAKP  152 (588)
T ss_dssp             CEEEEECSEEEECCCEEE
T ss_pred             CEEEEeCCEEEECCCCCC
Confidence            234789999999999743

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.51  E-value=9.2e-07  Score=90.93  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=51.3

Q ss_pred             eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          153 RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       153 ~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..||... ...+.++|.+.+++.|++|+++++|++|..++ ++...|+++      +.++.||+||+|+|.+.
T Consensus       226 ~~~p~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~v~~v~~~------g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          226 YLYPLYG-LGELPQGFARLSAIYGGTYMLNKPVDDIIMEN-GKVVGVKSE------GEVARCKQLICDPSYVP  290 (433)
T ss_dssp             EEEETTC-TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEET-TEEEEEEET------TEEEECSEEEECGGGCG
T ss_pred             EEEeCcC-HHHHHHHHHHHHHHcCCEEECCCEEEEEEEeC-CEEEEEEEC------CeEEECCEEEECCCCCc
Confidence            4576544 67889999999999999999999999998765 333345543      57899999999999764

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.50  E-value=4.7e-07  Score=94.37  Aligned_cols=37  Identities=35%  Similarity=0.495  Sum_probs=31.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP   86 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~   86 (481)
                      ++||+|||||++|++||+.|++.++|.+|+|||+...
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   72 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI   72 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            4799999999999999999998545899999997643

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.49  E-value=4.8e-07  Score=95.89  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=32.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ...||+||||+|++|+.+|..|++  .|.+|+|||++.
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~--~g~~VlvlE~g~   40 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGG   40 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCC
Confidence            357999999999999999999999  799999999653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.48  E-value=2.9e-07  Score=95.15  Aligned_cols=116  Identities=19%  Similarity=0.236  Sum_probs=70.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      +||+|||||++|+++|..|++..+|.+|+|+|+.. ++       ...|.+.        .    +....  +     ..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~-------~~~~~~~--------~----~~~g~--~-----~~   54 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNIS-------FLSCGIA--------L----YLGKE--I-----KN   54 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCC-------BCGGGHH--------H----HHTTC--B-----GG
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC-------cccccch--------h----hhcCC--c-----cc
Confidence            59999999999999999999844489999999764 32       1111100        0    00000  0     00


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      +++.+                  ..+           .+.+.+++.|++++.+++|..+..++  +.+.+...  ..+.+
T Consensus        55 ~~~~~------------------~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~v~~~--~~g~~  101 (452)
T 2cdu_A           55 NDPRG------------------LFY-----------SSPEELSNLGANVQMRHQVTNVDPET--KTIKVKDL--ITNEE  101 (452)
T ss_dssp             GCGGG------------------GBS-----------CCHHHHHHTTCEEEESEEEEEEEGGG--TEEEEEET--TTCCE
T ss_pred             CCHHH------------------hhh-----------cCHHHHHHcCCEEEeCCEEEEEEcCC--CEEEEEec--CCCce
Confidence            00000                  000           01223456799999999999998654  55555431  11224


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|++|+|||+.+
T Consensus       102 ~~~~~d~lviAtGs~p  117 (452)
T 2cdu_A          102 KTEAYDKLIMTTGSKP  117 (452)
T ss_dssp             EEEECSEEEECCCEEE
T ss_pred             EEEECCEEEEccCCCc
Confidence            6799999999999754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.47  E-value=7.2e-07  Score=93.21  Aligned_cols=60  Identities=13%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          158 SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       158 ~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      .+....+.+.|.+.+..   +|+++++|++|..++  +.+.|++.+. .....+++||+||+|++.
T Consensus       237 ~gG~~~l~~~l~~~l~~---~i~~~~~V~~I~~~~--~~v~v~~~~~-~~~~~~~~ad~vI~t~p~  296 (498)
T 2iid_A          237 VDGMDKLPTAMYRDIQD---KVHFNAQVIKIQQND--QKVTVVYETL-SKETPSVTADYVIVCTTS  296 (498)
T ss_dssp             TTCTTHHHHHHHHHTGG---GEESSCEEEEEEECS--SCEEEEEECS-SSCCCEEEESEEEECSCH
T ss_pred             CCcHHHHHHHHHHhccc---ccccCCEEEEEEECC--CeEEEEEecC-CcccceEEeCEEEECCCh
Confidence            34456777777766543   799999999999875  5677777641 000125899999999973

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.46  E-value=6.1e-07  Score=96.51  Aligned_cols=60  Identities=13%  Similarity=0.092  Sum_probs=41.7

Q ss_pred             CCCEEEcCceEEEEEecCCC-CeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          175 RGVVLQTGKVVTTASSDNAG-RKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       175 ~Gv~i~~~~~V~~i~~~~~~-~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      .|++|++++.|++|..++++ ...+|++.+..++...++.||.||+|+|+.+.. .++...|
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~-~lL~~sg  333 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNT-QLLVNSG  333 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHH-HHHHTTT
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCH-HHHHhcC
Confidence            38999999999999876411 345677764223445689999999999987653 3444333

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.45  E-value=2.4e-06  Score=89.81  Aligned_cols=35  Identities=40%  Similarity=0.589  Sum_probs=31.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+||+||||+|++|+.+|.+|++. ++.+|+|||++
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG   50 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAG   50 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSS
T ss_pred             CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCC
Confidence            479999999999999999999974 68999999965

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.45  E-value=2.2e-07  Score=95.90  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +||+|||||++|++||..|++..+|.+|+|||+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~   35 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCC
Confidence            58999999999999999999854489999999764

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.43  E-value=8.8e-07  Score=91.97  Aligned_cols=57  Identities=21%  Similarity=0.222  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHHhC--------CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          160 SSSSVIDCLLTEAKHR--------GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~--------Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      ....+.+.|.+.+.+.        |++|+++++|++|..++  +.+.|++.+     +.+++||+||+|++.
T Consensus       204 G~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~--~~v~v~~~~-----g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          204 GYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP--GGVTVKTED-----NSVYSADYVMVSASL  268 (472)
T ss_dssp             CTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECS--SCEEEEETT-----SCEEEESEEEECSCH
T ss_pred             cHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcC--CcEEEEECC-----CCEEEcCEEEEecCH
Confidence            4456777777666543        78999999999999875  557788775     568999999999983

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.42  E-value=4.7e-07  Score=91.02  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP   86 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~   86 (481)
                      -.||+|||||++|++||..|++  .| +|+|+|+...
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~--~g-~V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQ--TY-EVTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhh--cC-CEEEEECCCC
Confidence            4699999999999999999998  67 9999997653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.41  E-value=3.7e-06  Score=85.68  Aligned_cols=66  Identities=20%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ...+.+.+.+.+++.||+++++++|.++.  +  +  .|++.+     +.++.+|.||+|+|..+.. .+++.+|+.+
T Consensus       186 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~--~--~v~~~~-----g~~i~~D~vi~a~G~~p~~-~l~~~~gl~~  251 (408)
T 2gqw_A          186 PATLADFVARYHAAQGVDLRFERSVTGSV--D--G--VVLLDD-----GTRIAADMVVVGIGVLAND-ALARAAGLAC  251 (408)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEE--T--T--EEEETT-----SCEEECSEEEECSCEEECC-HHHHHHTCCB
T ss_pred             CHHHHHHHHHHHHHcCcEEEeCCEEEEEE--C--C--EEEECC-----CCEEEcCEEEECcCCCccH-HHHHhCCCCC
Confidence            35677788888999999999999999997  4  3  566655     5689999999999976542 3677777765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.40  E-value=7e-07  Score=88.09  Aligned_cols=39  Identities=31%  Similarity=0.485  Sum_probs=33.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      .++||+||||||+|++||++|++...|++|+|||+. .+|
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            357999999999999999999863369999999965 666

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.36  E-value=9.6e-07  Score=94.61  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+||+|||||++|++||..|++  .|++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~--~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAK--YGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHh--CCCeEEEEecc
Confidence            356899999999999999999999  78999999963

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.35  E-value=7.8e-07  Score=91.62  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHG  131 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  131 (481)
                      +|+|||||++|++||..|++.++..+|+|||++....      ..+|.+..        +.......             
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~------~~~~~l~~--------~~~~~~~~-------------   54 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS------FANCALPY--------VIGEVVED-------------   54 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS------BCGGGHHH--------HHTTSSCC-------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC------CCcchhHH--------HHcCCccc-------------
Confidence            6999999999999999999865567899999753210      12221100        00000000             


Q ss_pred             hHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEE
Q 011610          132 PMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVEC  211 (481)
Q Consensus       132 ~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~  211 (481)
                                       ......    ....       +..++.+++++.+++|+.+..+.  ..+.+...  ..+.+.+
T Consensus        55 -----------------~~~~~~----~~~~-------~~~~~~~i~~~~~~~V~~id~~~--~~~~~~~~--~~~~~~~  102 (437)
T 4eqs_A           55 -----------------RRYALA----YTPE-------KFYDRKQITVKTYHEVIAINDER--QTVSVLNR--KTNEQFE  102 (437)
T ss_dssp             -----------------GGGTBC----CCHH-------HHHHHHCCEEEETEEEEEEETTT--TEEEEEET--TTTEEEE
T ss_pred             -----------------hhhhhh----cCHH-------HHHHhcCCEEEeCCeEEEEEccC--cEEEEEec--cCCceEE
Confidence                             000000    0111       12345689999999999997654  44444332  2333568


Q ss_pred             EEcCeEEEccCCCh
Q 011610          212 IEADYLLIASGSSQ  225 (481)
Q Consensus       212 i~ad~VIlAtG~~g  225 (481)
                      +.+|++|+|||+.+
T Consensus       103 ~~yd~lVIATGs~p  116 (437)
T 4eqs_A          103 ESYDKLILSPGASA  116 (437)
T ss_dssp             EECSEEEECCCEEE
T ss_pred             EEcCEEEECCCCcc
Confidence            99999999999754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.35  E-value=3.1e-07  Score=93.59  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHhc-cCCCCcEEEEeCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKT-VAPKLNVVIIEKGK   85 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~-~~~g~~V~llE~~~   85 (481)
                      .||+|||||++|+++|..|++ ..+|.+|+|||+..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            589999999999999999998 33479999999764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.35  E-value=1.5e-06  Score=90.88  Aligned_cols=69  Identities=20%  Similarity=0.310  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ..+...+.+.+++.||+++++++|+++..++  +.+.|++.+     +.++.||.||+|+|..+.. .+++.+|+.+
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~~v~l~d-----G~~i~aD~Vv~a~G~~pn~-~l~~~~gl~~  294 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKLLIKLKD-----GRKVETDHIVAAVGLEPNV-ELAKTGGLEI  294 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEEEEEETT-----SCEEEESEEEECCCEEECC-TTHHHHTCCB
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC--CeEEEEECC-----CCEEECCEEEECCCCCccH-HHHHHcCCcc
Confidence            5667788888999999999999999998654  556777765     5689999999999976542 2566677664

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.34  E-value=7.1e-07  Score=91.83  Aligned_cols=53  Identities=17%  Similarity=-0.070  Sum_probs=40.5

Q ss_pred             cccccCCCCeEEEEEEeecccCcc-------hHHHHHHHHHHHHHHHHHhHHhhHhhhhc
Q 011610          426 TMESKIHPRLFFAGEVLNVDGVTG-------GFNFQNAWSGGYIAGTSIGKLSNDATLKN  478 (481)
Q Consensus       426 t~esk~~~gLy~~GE~ldv~g~~G-------Gynl~~A~~sG~~AG~~aa~~~~~~~~~~  478 (481)
                      +|+++.+||+|++|++..+.+..|       --.-+.|...|..|+.++++....+.++.
T Consensus       291 ~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~~  350 (437)
T 3sx6_A          291 HQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQ  350 (437)
T ss_dssp             TSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred             hccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            788889999999997665543211       12468899999999999998887766654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.31  E-value=3e-06  Score=89.95  Aligned_cols=34  Identities=38%  Similarity=0.537  Sum_probs=31.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +||+||||||++|+.+|.+|++. ++.+|+|||++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG   35 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAG   35 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSS
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecC
Confidence            58999999999999999999984 68999999965

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.31  E-value=6.9e-07  Score=93.49  Aligned_cols=111  Identities=20%  Similarity=0.226  Sum_probs=70.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .+||+|||||++|+++|+.|++  . ++|+|||+. .+|        |.+.  +...        .       .      
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~--~-~~V~vie~~~~~G--------G~~~--~~~~--------~-------~------  153 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQ--Y-LTVALIEERGWLG--------GDMW--LKGI--------K-------Q------  153 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTT--T-CCEEEECTTSSSS--------CSGG--GTCS--------E-------E------
T ss_pred             cCCEEEECccHHHHHHHHHHHh--c-CCEEEEeCCCCCC--------Ceee--cccc--------c-------c------
Confidence            4699999999999999999999  6 999999976 444        2221  1000        0       0      


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                       +            |++           .  ...++...+.+.+ +.|++++++++|.++..++  +.+.+...+  .+.
T Consensus       154 -~------------g~~-----------~--~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~--~~~~~~~~~--~~~  202 (493)
T 1y56_A          154 -E------------GFN-----------K--DSRKVVEELVGKL-NENTKIYLETSALGVFDKG--EYFLVPVVR--GDK  202 (493)
T ss_dssp             -T------------TTT-----------E--EHHHHHHHHHHTC-CTTEEEETTEEECCCEECS--SSEEEEEEE--TTE
T ss_pred             -C------------CCC-----------C--CHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcCC--cEEEEEEec--CCe
Confidence             0            000           0  1122233333333 5689999999999988764  445444321  111


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      ...+.+|++|+|||+.+
T Consensus       203 ~~~~~~d~lvlAtGa~~  219 (493)
T 1y56_A          203 LIEILAKRVVLATGAID  219 (493)
T ss_dssp             EEEEEESCEEECCCEEE
T ss_pred             EEEEECCEEEECCCCCc
Confidence            23799999999999754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.28  E-value=2.5e-06  Score=96.31  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=32.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      .+||+|||||++|++||+.|++  .|++|+|||+. .+|
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASR--SGARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCC
Confidence            5799999999999999999999  78999999975 554

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.25  E-value=6.2e-07  Score=92.11  Aligned_cols=53  Identities=9%  Similarity=-0.051  Sum_probs=39.8

Q ss_pred             ccccccCCCCeEEEEEEeecccCcch-------HHHHHHHHHHHHHHHHHhHHhhHhhhh
Q 011610          425 NTMESKIHPRLFFAGEVLNVDGVTGG-------FNFQNAWSGGYIAGTSIGKLSNDATLK  477 (481)
Q Consensus       425 ~t~esk~~~gLy~~GE~ldv~g~~GG-------ynl~~A~~sG~~AG~~aa~~~~~~~~~  477 (481)
                      .+|+++.+||+|++|+|.++....+.       -.-|.|...|.++++++++....+.++
T Consensus       279 ~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~~~  338 (430)
T 3hyw_A          279 RCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNPDK  338 (430)
T ss_dssp             TTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             ccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            68999999999999987766432211       123789999999999998777665544

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.23  E-value=7.8e-06  Score=86.52  Aligned_cols=59  Identities=12%  Similarity=0.127  Sum_probs=40.2

Q ss_pred             HHHHHHH-HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcC-eEEEccCCC
Q 011610          166 DCLLTEA-KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEAD-YLLIASGSS  224 (481)
Q Consensus       166 ~~l~~~~-~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad-~VIlAtG~~  224 (481)
                      .+++..+ .+.|++|++++.|++|..++++...+|.+.+..++....+.|+ .||+|+|+.
T Consensus       212 ~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~  272 (546)
T 2jbv_A          212 VSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAI  272 (546)
T ss_dssp             HHHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHH
T ss_pred             HHHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCcc
Confidence            3344434 3579999999999999986312355777653111334579998 899999974

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.22  E-value=5.1e-07  Score=95.48  Aligned_cols=34  Identities=32%  Similarity=0.518  Sum_probs=31.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+||+||||+|++|+.+|.+|++   +.+|+|||++
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG   57 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE---KYKVLVLERG   57 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT---TSCEEEECSS
T ss_pred             cCcccEEEECccHHHHHHHHHHhc---CCcEEEEecC
Confidence            356999999999999999999998   6899999976

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.14  E-value=1.3e-05  Score=84.01  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=31.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|++|||+|++|+.+|+.|++  .|.+|+|||++
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~   37 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMG   37 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCC
Confidence            46899999999999999999999  79999999954

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.13  E-value=1.8e-05  Score=83.04  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=32.5

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...++|++|||+|++|+.+|..|++  ++.+|+|||++
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~   43 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMG   43 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECC
Confidence            3457999999999999999999999  79999999954

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.11  E-value=1.2e-06  Score=90.69  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=32.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ..+||+|||||++|+++|+.|++  .|++|+|+|+. .+|
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~--~G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRA--KGYEVHVYDRYDRMG  158 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCC
Confidence            56899999999999999999999  68999999975 444

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.11  E-value=1.8e-05  Score=81.91  Aligned_cols=114  Identities=20%  Similarity=0.240  Sum_probs=78.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-+|..|++  .|.+|+|+|+.. +..              .  .+                      
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~--------------~--~~----------------------  209 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRR--LGAEVTLIEYMPEILP--------------Q--GD----------------------  209 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSST--------------T--SC----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEEEcCCcccc--------------c--cC----------------------
Confidence            589999999999999999998  689999999642 220              0  00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      ..+.+.+.+.+++.||+++++++|+++..++  +.+.|++.+...+..
T Consensus       210 --------------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  255 (464)
T 2eq6_A          210 --------------------------------PETAALLRRALEKEGIRVRTKTKAVGYEKKK--DGLHVRLEPAEGGEG  255 (464)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTCCSC
T ss_pred             --------------------------------HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC--CEEEEEEeecCCCce
Confidence                                            1122344556677899999999999998764  556666542000222


Q ss_pred             EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      .++.+|.||+|+|..+....+ ++.+|+.+
T Consensus       256 ~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~  285 (464)
T 2eq6_A          256 EEVVVDKVLVAVGRKPRTEGLGLEKAGVKV  285 (464)
T ss_dssp             EEEEESEEEECSCEEESCTTSSHHHHTCCB
T ss_pred             eEEEcCEEEECCCcccCCCCCChhhcCcee
Confidence            479999999999965532221 45556554

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.07  E-value=2.1e-05  Score=80.91  Aligned_cols=98  Identities=23%  Similarity=0.343  Sum_probs=72.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ...+|+|||||++|+.+|..|++  .|.+|+|+|+.. +..             +            +            
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~-------------~------------~------------  188 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRPLG-------------V------------Y------------  188 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTT-------------T------------T------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCccccc-------------c------------c------------
Confidence            34799999999999999999998  789999999642 220             0            0            


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                        ++                              ..+.+.+.+.+++.|++++++++|.++..++  ..+.|.++     
T Consensus       189 --~~------------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~v~~v~~~-----  229 (447)
T 1nhp_A          189 --LD------------------------------KEFTDVLTEEMEANNITIATGETVERYEGDG--RVQKVVTD-----  229 (447)
T ss_dssp             --CC------------------------------HHHHHHHHHHHHTTTEEEEESCCEEEEECSS--BCCEEEES-----
T ss_pred             --CC------------------------------HHHHHHHHHHHHhCCCEEEcCCEEEEEEccC--cEEEEEEC-----
Confidence              00                              1233455566778899999999999998542  33355554     


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                       +.++.+|.||+|+|..+
T Consensus       230 -~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          230 -KNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             -SCEEECSEEEECSCEEE
T ss_pred             -CCEEECCEEEECcCCCC
Confidence             45799999999999755

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=5e-05  Score=78.35  Aligned_cols=100  Identities=24%  Similarity=0.335  Sum_probs=72.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+|+|||||+.|+-+|..|++  .|.+|+|+|+.. +.              ..  .+                     
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------------~~--~~---------------------  210 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEIL--------------SG--FE---------------------  210 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------------TT--SC---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCccc--------------cc--cC---------------------
Confidence            3689999999999999999999  789999999642 21              00  00                     


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                       ..+.+.+.+.+++.||+++++++|.++..++  +.+.+++..  .+.
T Consensus       211 ---------------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~--~g~  253 (455)
T 1ebd_A          211 ---------------------------------KQMAAIIKKRLKKKGVEVVTNALAKGAEERE--DGVTVTYEA--NGE  253 (455)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEE--TTE
T ss_pred             ---------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CeEEEEEEe--CCc
Confidence                                             0122334455677899999999999998754  456666541  112


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +.++.+|.||+|+|..+
T Consensus       254 ~~~~~~D~vv~a~G~~p  270 (455)
T 1ebd_A          254 TKTIDADYVLVTVGRRP  270 (455)
T ss_dssp             EEEEEESEEEECSCEEE
T ss_pred             eeEEEcCEEEECcCCCc
Confidence            56899999999999655

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.02  E-value=5e-05  Score=78.81  Aligned_cols=104  Identities=22%  Similarity=0.249  Sum_probs=74.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+|+|||||..|+-+|..|++  .|.+|+|+|+. .+.              ..  .+                     
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------------~~--~~---------------------  223 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIG--------------AS--MD---------------------  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------------SS--SC---------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCccc--------------cc--cC---------------------
Confidence            3589999999999999999999  78999999964 222              00  00                     


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEec-CCCCeEEEEEeecccC
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSD-NAGRKFLLKVEKRTMN  207 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~~~~~V~~~~~~~~  207 (481)
                                                       ..+.+.+.+.+++.||+++++++|+++..+ + ++.+.|.+.+...+
T Consensus       224 ---------------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~~~~g  269 (478)
T 1v59_A          224 ---------------------------------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDD-KNVVEIVVEDTKTN  269 (478)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETT-TTEEEEEEEETTTT
T ss_pred             ---------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecC-CCeEEEEEEEcCCC
Confidence                                             122334455667789999999999999862 2 35566666521112


Q ss_pred             ceEEEEcCeEEEccCCChh
Q 011610          208 LVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g~  226 (481)
                      .+.++.+|.||+|+|..+.
T Consensus       270 ~~~~~~~D~vv~a~G~~p~  288 (478)
T 1v59_A          270 KQENLEAEVLLVAVGRRPY  288 (478)
T ss_dssp             EEEEEEESEEEECSCEEEC
T ss_pred             CceEEECCEEEECCCCCcC
Confidence            2578999999999996553

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.01  E-value=3.2e-05  Score=79.75  Aligned_cols=97  Identities=26%  Similarity=0.329  Sum_probs=72.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||++|+.+|..|++  .|.+|+|+|+.. +..             .   .            .          
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~--~g~~V~lv~~~~~~l~-------------~---~------------~----------  207 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHR--LGAEVIVLEYMDRILP-------------T---M------------D----------  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCT-------------T---S------------C----------
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCCcccc-------------c---c------------C----------
Confidence            589999999999999999998  689999999642 210             0   0            0          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      ..+.+.+.+.+++.|++++++++|+++..++  +.+.+++.+     +
T Consensus       208 --------------------------------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~-----g  248 (455)
T 2yqu_A          208 --------------------------------LEVSRAAERVFKKQGLTIRTGVRVTAVVPEA--KGARVELEG-----G  248 (455)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TEEEEEETT-----S
T ss_pred             --------------------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CEEEEEECC-----C
Confidence                                            0112233445566799999999999998764  556666654     5


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       249 ~~i~~D~vv~A~G~~p~  265 (455)
T 2yqu_A          249 EVLEADRVLVAVGRRPY  265 (455)
T ss_dssp             CEEEESEEEECSCEEEC
T ss_pred             eEEEcCEEEECcCCCcC
Confidence            68999999999997653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.00  E-value=1.5e-05  Score=83.25  Aligned_cols=110  Identities=16%  Similarity=0.159  Sum_probs=78.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCC---CCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAP---KLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF  126 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~---g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
                      .+++|||||..|+-.|..+++  .   |.+|+++|+.. +..             .   .                    
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~--~~~~g~~Vtlv~~~~~~l~-------------~---~--------------------  229 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNA--YKARGGQVDLAYRGDMILR-------------G---F--------------------  229 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH--HSCTTCEEEEEESSSSSST-------------T---S--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHh--hccCcCeEEEEEcCCCccc-------------c---c--------------------
Confidence            589999999999999999988  5   88999999642 210             0   0                    


Q ss_pred             HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                          +                              ..+.+.+.+.+++.||+|+++++|.++..++ ++.+.|++.+   
T Consensus       230 ----d------------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~---  271 (490)
T 1fec_A          230 ----D------------------------------SELRKQLTEQLRANGINVRTHENPAKVTKNA-DGTRHVVFES---  271 (490)
T ss_dssp             ----C------------------------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TSCEEEEETT---
T ss_pred             ----C------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCEEEEEECC---
Confidence                0                              1123345556678899999999999998764 3456777765   


Q ss_pred             CceEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          207 NLVECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                        +.++.+|.||+|+|..+....+ ++.+|+++
T Consensus       272 --G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~  302 (490)
T 1fec_A          272 --GAEADYDVVMLAIGRVPRSQTLQLEKAGVEV  302 (490)
T ss_dssp             --SCEEEESEEEECSCEEESCTTSCGGGGTCCB
T ss_pred             --CcEEEcCEEEEccCCCcCccccCchhcCccC
Confidence              5589999999999976543223 45556554

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.99  E-value=4.9e-05  Score=81.10  Aligned_cols=35  Identities=34%  Similarity=0.601  Sum_probs=31.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|++|||+|++|+++|..|++. ++.+|+|||++
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g   57 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKG   57 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecC
Confidence            569999999999999999999984 58999999965

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.97  E-value=2.5e-05  Score=81.70  Aligned_cols=71  Identities=13%  Similarity=0.155  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC--ceEEEEcCeEEEccCCCh--hHHHHHHHcCC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN--LVECIEADYLLIASGSSQ--QGHRLAAQLGH  236 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~--~~~~i~ad~VIlAtG~~g--~g~~la~~~G~  236 (481)
                      ...+.+.+.+.+++.||+|++++.|++++.    +...+.+.. .++  .++++.||.||.|+|-.+  ....++..++.
T Consensus       271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~----~~~~~~~~~-~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~  345 (502)
T 4g6h_A          271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEE----KQLLAKTKH-EDGKITEETIPYGTLIWATGNKARPVITDLFKKIPE  345 (502)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEECS----SEEEEEEEC-TTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGG
T ss_pred             CHHHHHHHHHHHHhcceeeecCceEEEEeC----CceEEEEEe-cCcccceeeeccCEEEEccCCcCCHHHHhHHHhccc
Confidence            467778888899999999999999999963    333333321 111  135799999999999543  23445555443

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.96  E-value=5.7e-05  Score=78.30  Aligned_cols=116  Identities=22%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+|+. .+..        +     .                          
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~--------~-----~--------------------------  217 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQR--LGADVTAVEFLGHVGG--------V-----G--------------------------  217 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSC--------S-----S--------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHH--cCCEEEEEeccCccCC--------c-----c--------------------------
Confidence            589999999999999999998  68999999964 2220        0     0                          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              ..+.+.+.+.+++.||+++++++|.++..++ ++.+.+++.+...+.+
T Consensus       218 ~~------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~  266 (474)
T 1zmd_A          218 ID------------------------------MEISKNFQRILQKQGFKFKLNTKVTGATKKS-DGKIDVSIEAASGGKA  266 (474)
T ss_dssp             CC------------------------------HHHHHHHHHHHHHTTCEEECSEEEEEEEECT-TSCEEEEEEETTSCCC
T ss_pred             cC------------------------------HHHHHHHHHHHHHCCCEEEeCceEEEEEEcC-CceEEEEEEecCCCCc
Confidence            00                              1122344556678899999999999998764 2326666431111225


Q ss_pred             EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      .++.+|.||+|+|..+....+ ++.+|+++
T Consensus       267 ~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~  296 (474)
T 1zmd_A          267 EVITCDVLLVCIGRRPFTKNLGLEELGIEL  296 (474)
T ss_dssp             EEEEESEEEECSCEEECCTTSSHHHHTCCC
T ss_pred             eEEEcCEEEECcCCCcCCCcCCchhcCCcc
Confidence            689999999999976542211 45566554

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.96  E-value=5.2e-05  Score=77.68  Aligned_cols=111  Identities=23%  Similarity=0.297  Sum_probs=79.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+|+|||||..|+-+|..|++  .|.+|+++|+.. +..             .  .                       
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~~~l~-------------~--~-----------------------  188 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARVLE-------------R--V-----------------------  188 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTT-------------T--T-----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCEEEEEEeCCcccc-------------c--h-----------------------
Confidence            3689999999999999999999  689999999642 210             0  0                       


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEe--cCCCCeEEEEEeeccc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASS--DNAGRKFLLKVEKRTM  206 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~~~V~~~~~~~  206 (481)
                       ++                              ..+.+.+.+.+++.||+++++++|.++..  ++ +....|++.+   
T Consensus       189 -~~------------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~v~~~~---  233 (431)
T 1q1r_A          189 -TA------------------------------PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ-QKVTAVLCED---  233 (431)
T ss_dssp             -SC------------------------------HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT-CCEEEEEETT---
T ss_pred             -hh------------------------------HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCC-CcEEEEEeCC---
Confidence             00                              11122334455677999999999999986  43 3444677765   


Q ss_pred             CceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          207 NLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                        +.++.+|.||+|+|..+.. .+++.+|+.+
T Consensus       234 --G~~i~~D~Vv~a~G~~p~~-~l~~~~gl~~  262 (431)
T 1q1r_A          234 --GTRLPADLVIAGIGLIPNC-ELASAAGLQV  262 (431)
T ss_dssp             --SCEEECSEEEECCCEEECC-HHHHHTTCCB
T ss_pred             --CCEEEcCEEEECCCCCcCc-chhhccCCCC
Confidence              5789999999999976542 4677788765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.94  E-value=5.1e-05  Score=78.58  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=77.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||..|+-.|..+++  .|.+|+++|+. .+.              ..  .+                      
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------------~~--~d----------------------  214 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWAR--LGAEVTVVEFAPRCA--------------PT--LD----------------------  214 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------------TT--SC----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHH--hCCEEEEEecCCccc--------------cc--CC----------------------
Confidence            589999999999999999998  68999999964 221              00  00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHH-HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEA-KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~-~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                      ..+.+.+.+.+ ++.||+++++++|.+++.++  +.+.|.+.. .++.
T Consensus       215 --------------------------------~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~-~~g~  259 (468)
T 2qae_A          215 --------------------------------EDVTNALVGALAKNEKMKFMTSTKVVGGTNNG--DSVSLEVEG-KNGK  259 (468)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTCCEEECSCEEEEEEECS--SSEEEEEEC-C---
T ss_pred             --------------------------------HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcC--CeEEEEEEc-CCCc
Confidence                                            11223445556 77899999999999998764  446666541 0111


Q ss_pred             eEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          209 VECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ..++.+|.||+|+|..+....+ ++.+|+++
T Consensus       260 ~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~  290 (468)
T 2qae_A          260 RETVTCEALLVSVGRRPFTGGLGLDKINVAK  290 (468)
T ss_dssp             EEEEEESEEEECSCEEECCTTSCHHHHTCCB
T ss_pred             eEEEECCEEEECCCcccCCCCCCchhcCCcc
Confidence            2679999999999976542111 45566654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.91  E-value=0.00013  Score=75.20  Aligned_cols=147  Identities=11%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..+|+|||||.+|+-+|..|++..++.+|+++++....             ......   .+...+.  .+.+. ..+..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~-------------~p~~~~---~~~~~~~--~p~~~-~~~~~  287 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL-------------KPADDS---PFVNEVF--APKFT-DLIYS  287 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC-------------CBCCCC---HHHHGGG--SHHHH-HHHHH
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC-------------cCccCC---ccchhcc--ChhHH-HHHhc
Confidence            45899999999999999999985448899999965321             000000   1111111  11121 12233


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecC--CChHHHHHHHH-HHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVS--DSSSSVIDCLL-TEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT  205 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~--~~a~~~~~~l~-~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~  205 (481)
                      .....-..+++...-        ..|+..  .-...+.+.+. +... ..|++++++++|+++..++  +.+.|++.+..
T Consensus       288 l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~  357 (463)
T 3s5w_A          288 REHAERERLLREYHN--------TNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA--QGIELALRDAG  357 (463)
T ss_dssp             SCHHHHHHHHHHTGG--------GTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET--TEEEEEEEETT
T ss_pred             CCHHHHHHHHHHhhc--------cCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC--CEEEEEEEEcC
Confidence            333322233332210        001000  00112222222 2222 2699999999999998764  67878776422


Q ss_pred             cCceEEEEcCeEEEccCCCh
Q 011610          206 MNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       206 ~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ++...++.+|.||+|||-.+
T Consensus       358 ~g~~~~~~~D~Vv~AtG~~p  377 (463)
T 3s5w_A          358 SGELSVETYDAVILATGYER  377 (463)
T ss_dssp             TCCEEEEEESEEEECCCEEC
T ss_pred             CCCeEEEECCEEEEeeCCCC
Confidence            33345799999999999544

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.88  E-value=4.1e-06  Score=86.78  Aligned_cols=36  Identities=33%  Similarity=0.419  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+||+|||||++|+.+|..|++.+++.+|+|||+.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~   40 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   40 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence            457999999999999999999984334999999975

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.86  E-value=2.3e-06  Score=88.61  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhc-cCC----CCcEEEEeCC-CCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKT-VAP----KLNVVIIEKG-KPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~-~~~----g~~V~llE~~-~~g   87 (481)
                      .+||+|||||++|+.||..|++ ..+    +.+|+|||+. .++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g   46 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   46 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC
Confidence            4799999999999999999987 533    7899999975 444

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.86  E-value=4.9e-05  Score=78.97  Aligned_cols=109  Identities=15%  Similarity=0.203  Sum_probs=76.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||..|+-.|..|++  .|.+|+++|+.. +..             .   .+            +.        
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~-------------~---~d------------~~--------  227 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHG--LGSETHLVIRGETVLR-------------K---FD------------EC--------  227 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH--TTCEEEEECSSSSSCT-------------T---SC------------HH--------
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCceEEEEeCCcccc-------------c---cC------------HH--------
Confidence            589999999999999999998  689999999642 210             0   00            00        


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC-eEEEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~  208 (481)
                                                        +.+.+.+.+++.||+++++++|+++..++ ++ .+.|++.+     
T Consensus       228 ----------------------------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~~v~~~~-----  267 (479)
T 2hqm_A          228 ----------------------------------IQNTITDHYVKEGINVHKLSKIVKVEKNV-ETDKLKIHMND-----  267 (479)
T ss_dssp             ----------------------------------HHHHHHHHHHHHTCEEECSCCEEEEEECC--CCCEEEEETT-----
T ss_pred             ----------------------------------HHHHHHHHHHhCCeEEEeCCEEEEEEEcC-CCcEEEEEECC-----
Confidence                                              11133445566799999999999998754 23 36677765     


Q ss_pred             e-EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          209 V-ECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       209 ~-~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      + .++.+|.||+|+|..+.. .+ ++.+|+++
T Consensus       268 G~~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~  298 (479)
T 2hqm_A          268 SKSIDDVDELIWTIGRKSHL-GMGSENVGIKL  298 (479)
T ss_dssp             SCEEEEESEEEECSCEEECC-CSSGGGGTCCB
T ss_pred             CcEEEEcCEEEECCCCCCcc-ccChhhcCceE
Confidence            5 689999999999976543 33 34455543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.85  E-value=0.0002  Score=69.54  Aligned_cols=102  Identities=19%  Similarity=0.330  Sum_probs=71.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..+|+|||+|..|+-.|..|++  .+.+|+++++....                . .+                      
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~----------------~-~~----------------------  183 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGF----------------R-AE----------------------  183 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSC----------------C-CC----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeCCcc----------------c-cC----------------------
Confidence            3589999999999999999998  68899999854211                0 00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc-Cc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM-NL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~-~~  208 (481)
                                                      ..+.+.+.+.+++.||+++++++|.++..++ ++...|++.+... +.
T Consensus       184 --------------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~g~  230 (320)
T 1trb_A          184 --------------------------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDN  230 (320)
T ss_dssp             --------------------------------HHHHHHHHHHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCCC
T ss_pred             --------------------------------HHHHHHHHHhcccCCeEEEcCceeEEEEcCC-CceEEEEEEeccCCCc
Confidence                                            0112234445677899999999999998764 3444566653111 23


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      ..++.+|.||+|+|..+
T Consensus       231 ~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          231 IESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             CEEEECSEEEECSCEEE
T ss_pred             eEEEEcCEEEEEeCCCC
Confidence            46899999999999543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.84  E-value=5.3e-05  Score=79.12  Aligned_cols=112  Identities=16%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .+++|||||..|+-.|..|++..+ |.+|+|+|+.. +..             .   .                      
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------~---~----------------------  233 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-------------G---F----------------------  233 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-------------T---S----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-------------c---c----------------------
Confidence            589999999999999999988211 88999999542 210             0   0                      


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                        +                              ..+.+.+.+.+++.||+++++++|.++..++ ++.+.|++.+     
T Consensus       234 --d------------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~-----  275 (495)
T 2wpf_A          234 --D------------------------------ETIREEVTKQLTANGIEIMTNENPAKVSLNT-DGSKHVTFES-----  275 (495)
T ss_dssp             --C------------------------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSCEEEEETT-----
T ss_pred             --C------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CceEEEEECC-----
Confidence              0                              0112234455677899999999999998764 3456777765     


Q ss_pred             eEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          209 VECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      +.++.+|.||+|+|..+....+ ++.+|+.+
T Consensus       276 G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~  306 (495)
T 2wpf_A          276 GKTLDVDVVMMAIGRIPRTNDLQLGNVGVKL  306 (495)
T ss_dssp             SCEEEESEEEECSCEEECCGGGTGGGTTCCB
T ss_pred             CcEEEcCEEEECCCCcccccccchhhcCccC
Confidence            5689999999999976543223 45556554

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.83  E-value=0.0001  Score=76.60  Aligned_cols=108  Identities=18%  Similarity=0.209  Sum_probs=76.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+|+|||||++|+-+|..|++  .|.+|+|+|+.. +..                .                       
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~----------------~-----------------------  224 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVE--LGKKVRMIERNDHIGT----------------I-----------------------  224 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHH--TTCEEEEECCGGGTTS----------------S-----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeCCchhh----------------c-----------------------
Confidence            4689999999999999999998  689999999542 210                0                       


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                       ++                              ..+.+.+.+.+++.|++++++++|+++..++  +.+.+.++      
T Consensus       225 -~~------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~v~~v~~~------  265 (480)
T 3cgb_A          225 -YD------------------------------GDMAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETD------  265 (480)
T ss_dssp             -SC------------------------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESS--BEEEEEET------
T ss_pred             -CC------------------------------HHHHHHHHHHHHHcCcEEEcCCEEEEEEcCC--cEEEEEEC------
Confidence             00                              1123345566778899999999999998643  44456554      


Q ss_pred             eEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          209 VECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      +.++.+|.||+|+|..+.. .+++.+|+.+
T Consensus       266 ~~~i~~D~vi~a~G~~p~~-~~l~~~g~~~  294 (480)
T 3cgb_A          266 KGTYKADLVLVSVGVKPNT-DFLEGTNIRT  294 (480)
T ss_dssp             TEEEECSEEEECSCEEESC-GGGTTSCCCB
T ss_pred             CCEEEcCEEEECcCCCcCh-HHHHhCCccc
Confidence            3579999999999975532 2344555443

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.83  E-value=1.3e-05  Score=81.15  Aligned_cols=40  Identities=25%  Similarity=0.241  Sum_probs=34.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS   88 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~   88 (481)
                      ....+||+|||||++|+++|+.|++  .|.+|+|+|+. .+|+
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG   66 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLAS--SGQRVLIVDRRPHIGG   66 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSG
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHH--CCCceEEEeccCCCCC
Confidence            3457899999999999999999999  79999999964 6663

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.83  E-value=1.5e-05  Score=80.07  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC--CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g   87 (481)
                      ..+||+|||||++|++||+.|++  .|++|+|+|+.  .+|
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~--~G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTR--AGHDVTILEANANRVG   81 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--TSCEEEEECSCSSCCB
T ss_pred             CCceEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccccC
Confidence            46899999999999999999999  78999999954  665

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.79  E-value=1.3e-05  Score=82.14  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +++||+|||||++|+++|+.|++  .|++|+|||+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~--~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQ--HDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHH--TTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence            56899999999999999999999  799999999654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.78  E-value=1.5e-05  Score=80.92  Aligned_cols=38  Identities=29%  Similarity=0.274  Sum_probs=33.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCC-CCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKG-KPLS   88 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~-~~g~   88 (481)
                      .++||+|||||++|++||+.|++  . |.+|+|+|+. .+|+
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~--~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVAT--QLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHH--HSCCCEEEECSSSSSSG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--hCCCCEEEEeCCCCCCC
Confidence            46899999999999999999999  5 8999999954 7774

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.76  E-value=1.4e-05  Score=90.92  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~-~~g   87 (481)
                      ..+||+|||||++|++||+.|++  .|+ +|+|+|+. .+|
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~--~G~~~Vtv~E~~~~~G  224 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEYVG  224 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSSCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh--cCCCcEEEEeCCCCCC
Confidence            46899999999999999999999  688 79999975 454

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.74  E-value=0.00013  Score=73.08  Aligned_cols=102  Identities=20%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||+.|+-+|..|++  .|.+|+++|+.. +.              .   .+                      
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------------~---~~----------------------  182 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFL--------------G---LD----------------------  182 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSCCT--------------T---CC----------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCCeec--------------c---CC----------------------
Confidence            589999999999999999999  689999999642 21              0   00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      ..+.+.+.+.+++.||+++++++|.++.  .  +  .|++++     +
T Consensus       183 --------------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~--~--~v~~~~-----g  219 (367)
T 1xhc_A          183 --------------------------------EELSNMIKDMLEETGVKFFLNSELLEAN--E--E--GVLTNS-----G  219 (367)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTEEEECSCCEEEEC--S--S--EEEETT-----E
T ss_pred             --------------------------------HHHHHHHHHHHHHCCCEEEcCCEEEEEE--e--e--EEEECC-----C
Confidence                                            0122334455677899999999999996  2  2  255554     5


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      . +.+|.||+|+|..+... +++.+|++.
T Consensus       220 ~-i~~D~vi~a~G~~p~~~-ll~~~gl~~  246 (367)
T 1xhc_A          220 F-IEGKVKICAIGIVPNVD-LARRSGIHT  246 (367)
T ss_dssp             E-EECSCEEEECCEEECCH-HHHHTTCCB
T ss_pred             E-EEcCEEEECcCCCcCHH-HHHhCCCCC
Confidence            5 99999999999766533 677788764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.74  E-value=0.00028  Score=68.85  Aligned_cols=97  Identities=18%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ...|+|||+|.+|+-+|..|++  .+.+|+++++.....             .                           
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~--~g~~v~~v~~~~~~~-------------~---------------------------  210 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTK--YGSKVFMLVRKDHLR-------------A---------------------------  210 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSCC-------------S---------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCccC-------------C---------------------------
Confidence            3579999999999999999998  688999998542110             0                           


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                         ...+.+.+.+ .||+++++++|.++..++ ++...|++.+...+.
T Consensus       211 -----------------------------------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~g~  254 (338)
T 3itj_A          211 -----------------------------------STIMQKRAEKNEKIEILYNTVALEAKGDG-KLLNALRIKNTKKNE  254 (338)
T ss_dssp             -----------------------------------CHHHHHHHHHCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTTE
T ss_pred             -----------------------------------CHHHHHHHHhcCCeEEeecceeEEEEccc-CcEEEEEEEECCCCc
Confidence                                               0012223333 499999999999998765 344557766423344


Q ss_pred             eEEEEcCeEEEccCCC
Q 011610          209 VECIEADYLLIASGSS  224 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~  224 (481)
                      +.++.+|.||+|+|..
T Consensus       255 ~~~i~~D~vi~a~G~~  270 (338)
T 3itj_A          255 ETDLPVSGLFYAIGHT  270 (338)
T ss_dssp             EEEEECSEEEECSCEE
T ss_pred             eEEEEeCEEEEEeCCC
Confidence            5789999999999953

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.73  E-value=0.00016  Score=74.78  Aligned_cols=101  Identities=20%  Similarity=0.232  Sum_probs=71.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+|+.. +.              ..  .+                      
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~~----------------------  217 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIV--------------PT--MD----------------------  217 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------------TT--SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCccc--------------cc--cc----------------------
Confidence            589999999999999999998  689999999642 21              00  00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      ..+.+.+.+.+++.||+++++++|.++..++  +.+.|++.+..++.+
T Consensus       218 --------------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  263 (470)
T 1dxl_A          218 --------------------------------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG--DGVKLTVEPSAGGEQ  263 (470)
T ss_dssp             --------------------------------HHHHHHHHHHHHHSSCCEECSEEEEEEECSS--SSEEEEEEESSSCCC
T ss_pred             --------------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcC--CeEEEEEEecCCCcc
Confidence                                            0112334456677899999999999998654  446666542111224


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|..+
T Consensus       264 ~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          264 TIIEADVVLVSAGRTP  279 (470)
T ss_dssp             EEEEESEEECCCCEEE
T ss_pred             eEEECCEEEECCCCCc
Confidence            6899999999999655

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.73  E-value=0.00023  Score=73.52  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=71.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-+|..+++  .|.+|+++|+.. +.              .   .+                      
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------------~---~~----------------------  215 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFAR--LGSKVTVLARNTLFF--------------R---ED----------------------  215 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTT--------------T---SC----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCEEEEEEECCccC--------------C---CC----------------------
Confidence            589999999999999999998  688999999542 11              0   00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      ..+.+.+.+.+++.||+++++++|.++..++  +.+.|.++      +
T Consensus       216 --------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~~v~~~------~  255 (467)
T 1zk7_A          216 --------------------------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHMD--GEFVLTTT------H  255 (467)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTCEEETTCCEEEEEEET--TEEEEEET------T
T ss_pred             --------------------------------HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEC------C
Confidence                                            1122344556677899999999999998754  56667665      3


Q ss_pred             EEEEcCeEEEccCCChh
Q 011610          210 ECIEADYLLIASGSSQQ  226 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~  226 (481)
                      .++.+|.||+|+|..+.
T Consensus       256 ~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          256 GELRADKLLVATGRTPN  272 (467)
T ss_dssp             EEEEESEEEECSCEEES
T ss_pred             cEEEcCEEEECCCCCcC
Confidence            57999999999997653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.72  E-value=0.00021  Score=74.55  Aligned_cols=109  Identities=19%  Similarity=0.228  Sum_probs=76.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||..|+-.|..+++  .|.+|+++|+.. +.              ..  .+                      
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l--------------~~--~d----------------------  222 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTE--LGVPVTVVASQDHVL--------------PY--ED----------------------  222 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHH--TTCCEEEECSSSSSS--------------CC--SS----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccc--------------cc--cC----------------------
Confidence            579999999999999999998  689999999542 21              00  00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      ..+.+.+.+.+++.||+|+++++|+++..++  +.+.|.+.+     +
T Consensus       223 --------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~v~~~~-----g  263 (499)
T 1xdi_A          223 --------------------------------ADAALVLEESFAERGVRLFKNARAASVTRTG--AGVLVTMTD-----G  263 (499)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTCEEETTCCEEEEEECS--SSEEEEETT-----S
T ss_pred             --------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CEEEEEECC-----C
Confidence                                            0112334456677899999999999998764  446666554     5


Q ss_pred             EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      .++.+|.||+|+|..+....+ ++.+|+++
T Consensus       264 ~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~  293 (499)
T 1xdi_A          264 RTVEGSHALMTIGSVPNTSGLGLERVGIQL  293 (499)
T ss_dssp             CEEEESEEEECCCEEECCSSSCTTTTTCCC
T ss_pred             cEEEcCEEEECCCCCcCCCcCCchhcCceE
Confidence            689999999999976532111 34455543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.68  E-value=0.00019  Score=74.11  Aligned_cols=112  Identities=21%  Similarity=0.252  Sum_probs=75.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-.|..|++  .|.+|+|+|+.. +.              ..  .+            .         
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------------~~--~~------------~---------  212 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKN--YGVDVTIVEFLPRAL--------------PN--ED------------A---------  212 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------------TT--SC------------H---------
T ss_pred             CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcCCccc--------------cc--cC------------H---------
Confidence            589999999999999999998  689999999642 21              00  00            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                       .+.+.+.+.+++.||+++++++|.++..++  +.+.+.+.+  ++..
T Consensus       213 ---------------------------------~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~--~g~~  255 (464)
T 2a8x_A          213 ---------------------------------DVSKEIEKQFKKLGVTILTATKVESIADGG--SQVTVTVTK--DGVA  255 (464)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHTCEEECSCEEEEEEECS--SCEEEEEES--SSCE
T ss_pred             ---------------------------------HHHHHHHHHHHHcCCEEEeCcEEEEEEEcC--CeEEEEEEc--CCce
Confidence                                             011223344566799999999999998764  445566541  1223


Q ss_pred             EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      .++.+|.||+|+|..+....+ ++.+|+.+
T Consensus       256 ~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~  285 (464)
T 2a8x_A          256 QELKAEKVLQAIGFAPNVEGYGLDKAGVAL  285 (464)
T ss_dssp             EEEEESEEEECSCEEECCSSSCHHHHTCCB
T ss_pred             EEEEcCEEEECCCCCccCCCCCchhcCCcc
Confidence            679999999999965532111 45556554

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.67  E-value=3e-05  Score=80.83  Aligned_cols=39  Identities=36%  Similarity=0.536  Sum_probs=33.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSK   89 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k   89 (481)
                      ..+||+|||||++||+||+.|++  .|++|+|+|+ +.+|+.
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG~   51 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGK   51 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCCc
Confidence            46899999999999999999999  7999999995 477753

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.67  E-value=0.00027  Score=73.55  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=70.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+|+|||||..|+-+|..|++  .|.+|+|+|+.. +..             .  .                       
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~-------------~--~-----------------------  233 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQR--KGKEVVLIDVVDTCLA-------------G--Y-----------------------  233 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTT-------------T--T-----------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCeEEEEEcccchhh-------------h--H-----------------------
Confidence            4689999999999999999998  689999999642 210             0  0                       


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                       ++                              ..+.+.+.+.+++.||+++++++|+++..+  +....|.++      
T Consensus       234 -~~------------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~v~~v~~~------  274 (490)
T 2bc0_A          234 -YD------------------------------RDLTDLMAKNMEEHGIQLAFGETVKEVAGN--GKVEKIITD------  274 (490)
T ss_dssp             -SC------------------------------HHHHHHHHHHHHTTTCEEEETCCEEEEECS--SSCCEEEES------
T ss_pred             -HH------------------------------HHHHHHHHHHHHhCCeEEEeCCEEEEEEcC--CcEEEEEEC------
Confidence             00                              112234455667889999999999999853  233345553      


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +.++.+|.||+|+|..+
T Consensus       275 g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          275 KNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             SCEEECSEEEECCCEEE
T ss_pred             CcEEECCEEEECCCCCc
Confidence            56899999999999654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.67  E-value=8.9e-05  Score=77.07  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=77.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+|+|||||..|+-.|..|++  .|.+|+|+|+.. +..             .   .+            +        
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l~-------------~---~~------------~--------  226 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDGLMQ-------------G---AD------------R--------  226 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSSSST-------------T---SC------------H--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCcccc-------------c---cC------------H--------
Confidence            3589999999999999999998  689999999642 210             0   00            0        


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                        .+.+.+.+.+++.||+++++++|.+++.++  +.+.|++.+ ..+.
T Consensus       227 ----------------------------------~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-~~~~  269 (482)
T 1ojt_A          227 ----------------------------------DLVKVWQKQNEYRFDNIMVNTKTVAVEPKE--DGVYVTFEG-ANAP  269 (482)
T ss_dssp             ----------------------------------HHHHHHHHHHGGGEEEEECSCEEEEEEEET--TEEEEEEES-SSCC
T ss_pred             ----------------------------------HHHHHHHHHHHhcCCEEEECCEEEEEEEcC--CeEEEEEec-cCCC
Confidence                                              112233445667899999999999998764  556666652 1111


Q ss_pred             eEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          209 VECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      +.++.+|.||+|+|..+....+ ++.+|+++
T Consensus       270 g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~  300 (482)
T 1ojt_A          270 KEPQRYDAVLVAAGRAPNGKLISAEKAGVAV  300 (482)
T ss_dssp             SSCEEESCEEECCCEEECGGGTTGGGTTCCC
T ss_pred             ceEEEcCEEEECcCCCcCCCCCChhhcCcee
Confidence            3468899999999976543222 45666554

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.64  E-value=0.00034  Score=72.38  Aligned_cols=99  Identities=19%  Similarity=0.164  Sum_probs=71.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||+|..|+-.|..+++  .|.+|+++++.. +.              ..                          
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------------~~--------------------------  218 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFL--------------PA--------------------------  218 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------------TT--------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcC--------------cc--------------------------
Confidence            579999999999999999998  689999999642 11              00                          


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              ..+.+.+.+.+++.||+++++++|.+++.++  +.+.+.+.+  .++.
T Consensus       219 ~~------------------------------~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~--~~~~v~~~~--~~g~  264 (476)
T 3lad_A          219 VD------------------------------EQVAKEAQKILTKQGLKILLGARVTGTEVKN--KQVTVKFVD--AEGE  264 (476)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHTTEEEEETCEEEEEEECS--SCEEEEEES--SSEE
T ss_pred             cC------------------------------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcC--CEEEEEEEe--CCCc
Confidence            00                              1122344456677899999999999998765  556666653  1112


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|..+
T Consensus       265 ~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          265 KSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             EEEEESEEEECSCEEE
T ss_pred             EEEECCEEEEeeCCcc
Confidence            6799999999999654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.64  E-value=3.2e-05  Score=77.57  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS   88 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~   88 (481)
                      ++||+|||||++|+++|+.|++  .|.+|+|+|+ +.+|+
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGG   38 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSG
T ss_pred             CCCEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCc
Confidence            3699999999999999999999  6899999996 46764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.63  E-value=0.00067  Score=70.49  Aligned_cols=103  Identities=16%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||||..|+-.|..+++  .|.+|+++++....+             .   .+                       
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~l~-------------~---~d-----------------------  224 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTG--IGLDTTVMMRSIPLR-------------G---FD-----------------------  224 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCSST-------------T---SC-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCceEEEEcCcccc-------------c---CC-----------------------
Confidence            479999999999999999999  689999998642210             0   00                       


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                                     .++.+.+.+.+++.||++++++.|.++...+ ++.+.|++.+...+...
T Consensus       225 -------------------------------~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~  272 (488)
T 3dgz_A          225 -------------------------------QQMSSLVTEHMESHGTQFLKGCVPSHIKKLP-TNQLQVTWEDHASGKED  272 (488)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTCEEEETEEEEEEEECT-TSCEEEEEEETTTTEEE
T ss_pred             -------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEEeCCCCeeE
Confidence                                           0122334455677899999999999998754 35566666531112223


Q ss_pred             EEEcCeEEEccCCChh
Q 011610          211 CIEADYLLIASGSSQQ  226 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~  226 (481)
                      ++.+|.||+|+|-.+.
T Consensus       273 ~~~~D~vi~a~G~~p~  288 (488)
T 3dgz_A          273 TGTFDTVLWAIGRVPE  288 (488)
T ss_dssp             EEEESEEEECSCEEES
T ss_pred             EEECCEEEEcccCCcc
Confidence            6899999999996543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.62  E-value=0.0003  Score=74.90  Aligned_cols=106  Identities=20%  Similarity=0.303  Sum_probs=77.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-+|..+++  .|.+|+++++.. +..             .   .+                      
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~-------------~---~~----------------------  227 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRE--RGIEVTLVEMANQVMP-------------P---ID----------------------  227 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCT-------------T---SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCcccc-------------c---CC----------------------
Confidence            579999999999999999999  689999998542 210             0   00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      ..+.+.+.+.+++.||+++++++|.++..++  +  .|.+.+     +
T Consensus       228 --------------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~--~v~~~~-----g  266 (588)
T 3ics_A          228 --------------------------------YEMAAYVHEHMKNHDVELVFEDGVDALEENG--A--VVRLKS-----G  266 (588)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTCEEECSCCEEEEEGGG--T--EEEETT-----S
T ss_pred             --------------------------------HHHHHHHHHHHHHcCCEEEECCeEEEEecCC--C--EEEECC-----C
Confidence                                            0112344455667899999999999998654  3  355554     5


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .++.+|.||+|+|..+.. .+++.+|+++
T Consensus       267 ~~i~~D~Vi~a~G~~p~~-~~l~~~g~~~  294 (588)
T 3ics_A          267 SVIQTDMLILAIGVQPES-SLAKGAGLAL  294 (588)
T ss_dssp             CEEECSEEEECSCEEECC-HHHHHTTCCB
T ss_pred             CEEEcCEEEEccCCCCCh-HHHHhcCceE
Confidence            689999999999976543 3577777765

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.57  E-value=0.00021  Score=73.76  Aligned_cols=96  Identities=27%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||++|+-+|..|++  .|.+|+|+|+.. +.              .  ..+            .         
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------------~--~~~------------~---------  212 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERIL--------------P--TYD------------S---------  212 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------------T--TSC------------H---------
T ss_pred             CeEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCCccc--------------c--ccC------------H---------
Confidence            589999999999999999998  689999999642 21              0  000            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                       .+.+.+.+.+++.||+++++++|.++.. +  + +.+...+   +..
T Consensus       213 ---------------------------------~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~--~-v~v~~~~---G~~  252 (458)
T 1lvl_A          213 ---------------------------------ELTAPVAESLKKLGIALHLGHSVEGYEN-G--C-LLANDGK---GGQ  252 (458)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHTCEEETTCEEEEEET-T--E-EEEECSS---SCC
T ss_pred             ---------------------------------HHHHHHHHHHHHCCCEEEECCEEEEEEe-C--C-EEEEECC---Cce
Confidence                                             1112334455667999999999999975 4  3 4444221   212


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|..+
T Consensus       253 ~~i~~D~vv~a~G~~p  268 (458)
T 1lvl_A          253 LRLEADRVLVAVGRRP  268 (458)
T ss_dssp             CEECCSCEEECCCEEE
T ss_pred             EEEECCEEEECcCCCc
Confidence            5799999999999655

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.55  E-value=0.00067  Score=69.71  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=70.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-.|..+++  .|.+|+++|+.. +.              .. .                        
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------------~~-~------------------------  188 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSN--QNYNVNLIDGHERVL--------------YK-Y------------------------  188 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSTT--------------TT-T------------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHh--cCCEEEEEEcCCchh--------------hh-h------------------------
Confidence            579999999999999999998  689999999642 21              00 0                        


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE-EEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF-LLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~-~V~~~~~~~~~  208 (481)
                      ++                              ..+.+.+.+.+++.||+++++++|.++..++  +.+ .+.+ +     
T Consensus       189 ~~------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~~v~~-~-----  230 (452)
T 2cdu_A          189 FD------------------------------KEFTDILAKDYEAHGVNLVLGSKVAAFEEVD--DEIITKTL-D-----  230 (452)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHTTCEEEESSCEEEEEEET--TEEEEEET-T-----
T ss_pred             hh------------------------------hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCC--CeEEEEEe-C-----
Confidence            00                              1122334456678899999999999998643  444 3443 3     


Q ss_pred             eEEEEcCeEEEccCCChh
Q 011610          209 VECIEADYLLIASGSSQQ  226 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g~  226 (481)
                      +.++.+|.||+|+|..+.
T Consensus       231 g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          231 GKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             SCEEEESEEEECCCEEEC
T ss_pred             CCEEECCEEEECcCCCCC
Confidence            567999999999996553

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.55  E-value=0.00053  Score=71.04  Aligned_cols=102  Identities=18%  Similarity=0.063  Sum_probs=71.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-.|..+++  .|.+|+++++.. +.+             .   .+                      
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~-------------~---~d----------------------  227 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLR-------------S---FD----------------------  227 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCT-------------T---SC----------------------
T ss_pred             ccEEEECCCHHHHHHHHHHHH--cCCeEEEEEeCCcccc-------------c---cC----------------------
Confidence            589999999999999999999  689999999642 210             0   00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC-eEEEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~  208 (481)
                                                      ..+.+.+.+.+++.||+++++++|.+++.++ ++ .+.|.+.+...+.
T Consensus       228 --------------------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~~~~g~  274 (478)
T 3dk9_A          228 --------------------------------SMISTNCTEELENAGVEVLKFSQVKEVKKTL-SGLEVSMVTAVPGRLP  274 (478)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTCEEETTEEEEEEEECS-SSEEEEEEECCTTSCC
T ss_pred             --------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEEccCCCCc
Confidence                                            0112234455677899999999999998764 34 3566665311111


Q ss_pred             --eEEEEcCeEEEccCCCh
Q 011610          209 --VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 --~~~i~ad~VIlAtG~~g  225 (481)
                        +..+.+|.||+|+|-.+
T Consensus       275 ~~g~~~~~D~vi~a~G~~p  293 (478)
T 3dk9_A          275 VMTMIPDVDCLLWAIGRVP  293 (478)
T ss_dssp             EEEEEEEESEEEECSCEEE
T ss_pred             ccceEEEcCEEEEeecccc
Confidence              26899999999999654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.54  E-value=7e-05  Score=77.99  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=35.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC-CCCCceE
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG-KPLSKVK   91 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~-~~g~k~~   91 (481)
                      +.+||+|||||++|+++|+.|++  .| .+|+|+|+. .+|+++.
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~--~g~~~v~v~E~~~~~GG~~~   50 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTE--LGYKNWHLYECNDTPGGLSR   50 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHH--TTCCSEEEEESSSSSSGGGC
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCeee
Confidence            46899999999999999999999  56 799999964 7776544

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.52  E-value=0.00053  Score=70.44  Aligned_cols=108  Identities=26%  Similarity=0.323  Sum_probs=76.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+|+|||||..|+-+|..+++  .|.+|+++++.. +..             .                          .
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~-------------~--------------------------~  187 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAA--QGKNVTMIVRGERVLR-------------R--------------------------S  187 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTT-------------T--------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCeEEEEEcCCccch-------------h--------------------------h
Confidence            489999999999999999998  689999999642 210             0                          0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              ..+.+.+.+.+++. |++++++.|.++..++  ....+.++      +
T Consensus       188 ~~------------------------------~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~--~v~~v~~~------g  228 (449)
T 3kd9_A          188 FD------------------------------KEVTDILEEKLKKH-VNLRLQEITMKIEGEE--RVEKVVTD------A  228 (449)
T ss_dssp             SC------------------------------HHHHHHHHHHHTTT-SEEEESCCEEEEECSS--SCCEEEET------T
T ss_pred             cC------------------------------HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC--cEEEEEeC------C
Confidence            00                              11223344455666 9999999999997542  32234333      5


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      .++.+|.||+|+|..+.. .+++.+|+++.
T Consensus       229 ~~i~~D~Vv~a~G~~p~~-~l~~~~gl~~~  257 (449)
T 3kd9_A          229 GEYKAELVILATGIKPNI-ELAKQLGVRIG  257 (449)
T ss_dssp             EEEECSEEEECSCEEECC-HHHHHTTCCBC
T ss_pred             CEEECCEEEEeeCCccCH-HHHHhCCccCC
Confidence            689999999999976543 46778887753

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.46  E-value=0.0001  Score=74.35  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=32.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS   88 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~   88 (481)
                      ++||+|||||++|+++|+.|++  .|.+|+|+|+. .+|+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG   40 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGG   40 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEEecCCcCC
Confidence            4799999999999999999999  68999999954 6663

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.44  E-value=0.0013  Score=63.84  Aligned_cols=97  Identities=27%  Similarity=0.279  Sum_probs=66.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|+.|+-.|..|++  .+.+|+++++....                .  .           .           
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~--~g~~V~~i~~~~~~----------------~--~-----------~-----------  193 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSE--YVKNVTIIEYMPKY----------------M--C-----------E-----------  193 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT--TBSEEEEECSSSSC----------------C--S-----------C-----------
T ss_pred             CeEEEECCCHHHHHHHHHHHh--hCCcEEEEEcCCcc----------------C--C-----------C-----------
Confidence            579999999999999999998  68899999853210                0  0           0           


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                                         ..+.+.+.+.||+++++++|.++..++ +....|.+.+..++...
T Consensus       194 -----------------------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~  237 (319)
T 3cty_A          194 -----------------------------------NAYVQEIKKRNIPYIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEK  237 (319)
T ss_dssp             -----------------------------------HHHHHHHHHTTCCEECSEEEEEEEESS-SSEEEEEEEETTTCCEE
T ss_pred             -----------------------------------HHHHHHHhcCCcEEEcCCeEEEEecCC-ceEEEEEEEEcCCCceE
Confidence                                               001122346799999999999998764 22445665421122234


Q ss_pred             EEEcCeEEEccCCCh
Q 011610          211 CIEADYLLIASGSSQ  225 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g  225 (481)
                      ++.+|.||+|+|..+
T Consensus       238 ~i~~D~vi~a~G~~p  252 (319)
T 3cty_A          238 LIETDGVFIYVGLIP  252 (319)
T ss_dssp             EECCSEEEECCCEEE
T ss_pred             EEecCEEEEeeCCcc
Confidence            799999999999544

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.39  E-value=0.0017  Score=62.68  Aligned_cols=97  Identities=22%  Similarity=0.285  Sum_probs=67.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|++|+-+|..|++  .+.+|+++++....                . .+            .          
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~----------------~-~~------------~----------  183 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPEM----------------K-AD------------Q----------  183 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSSSC----------------C-SC------------H----------
T ss_pred             CEEEEECCCHHHHHHHHHHHH--hCCEEEEEEeCccc----------------C-cc------------H----------
Confidence            579999999999999999998  68899999854210                0 00            0          


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                          .+.+.+.+ .||+++++++|+++..++ +....|++.+..++..
T Consensus       184 ------------------------------------~~~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~  226 (310)
T 1fl2_A          184 ------------------------------------VLQDKLRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDI  226 (310)
T ss_dssp             ------------------------------------HHHHHHHTCTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCE
T ss_pred             ------------------------------------HHHHHHhhCCCeEEecCCceEEEEcCC-CcEEEEEEEECCCCcE
Confidence                                                11122334 589999999999998754 3333566654222333


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|..+
T Consensus       227 ~~i~~D~vi~a~G~~p  242 (310)
T 1fl2_A          227 HNIELAGIFVQIGLLP  242 (310)
T ss_dssp             EEEECSEEEECSCEEE
T ss_pred             EEEEcCEEEEeeCCcc
Confidence            5799999999999544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.37  E-value=0.00076  Score=66.81  Aligned_cols=111  Identities=16%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|..|+-.|..|++  .+.+|+++++....             ..   .+             .+        
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~--~g~~V~lv~~~~~~-------------~~---~~-------------~~--------  204 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIK--NAASVTLVHRGHEF-------------QG---HG-------------KT--------  204 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTT--TSSEEEEECSSSSC-------------SS---CS-------------HH--------
T ss_pred             CcEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCCC-------------CC---CH-------------HH--------
Confidence            589999999999999999998  68899999854211             00   00             00        


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                                        .+.+.+..++.||+++++++|.++..++ +....|.+.. .++...
T Consensus       205 ----------------------------------~~~l~~~~~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~-~~g~~~  248 (360)
T 3ab1_A          205 ----------------------------------AHEVERARANGTIDVYLETEVASIEESN-GVLTRVHLRS-SDGSKW  248 (360)
T ss_dssp             ----------------------------------HHSSHHHHHHTSEEEESSEEEEEEEEET-TEEEEEEEEE-TTCCEE
T ss_pred             ----------------------------------HHHHHHHhhcCceEEEcCcCHHHhccCC-CceEEEEEEe-cCCCeE
Confidence                                              0112233456799999999999998764 2323555541 122236


Q ss_pred             EEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610          211 CIEADYLLIASGSSQQGHRLAAQLGHS  237 (481)
Q Consensus       211 ~i~ad~VIlAtG~~g~g~~la~~~G~~  237 (481)
                      .+.+|.||+|+|..+.. .+++.+|+.
T Consensus       249 ~i~~D~vi~a~G~~p~~-~~l~~~~~~  274 (360)
T 3ab1_A          249 TVEADRLLILIGFKSNL-GPLARWDLE  274 (360)
T ss_dssp             EEECSEEEECCCBCCSC-GGGGGSSCC
T ss_pred             EEeCCEEEECCCCCCCH-HHHHhhccc
Confidence            89999999999965532 234444544

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.36  E-value=0.002  Score=62.12  Aligned_cols=98  Identities=20%  Similarity=0.186  Sum_probs=66.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ...|+|||+|..|+-+|..|++  .+.+|+++++....             .    .+            .         
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~-------------~----~~------------~---------  182 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLAN--ICKKVYLIHRRDGF-------------R----CA------------P---------  182 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHT--TSSEEEEECSSSSC-------------C----SC------------H---------
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEeeCCcc-------------C----CC------------H---------
Confidence            3689999999999999999998  68899999854210             0    00            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                          +                                 +.+.+. +.||+++++++|.++..++ ++...|.+.+..++.
T Consensus       183 ----~---------------------------------~~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~  224 (311)
T 2q0l_A          183 ----I---------------------------------TLEHAKNNDKIEFLTPYVVEEIKGDA-SGVSSLSIKNTATNE  224 (311)
T ss_dssp             ----H---------------------------------HHHHHHTCTTEEEETTEEEEEEEEET-TEEEEEEEEETTTCC
T ss_pred             ----H---------------------------------HHHHHhhCCCeEEEeCCEEEEEECCC-CcEeEEEEEecCCCc
Confidence                0                                 111222 3689999999999998763 232355555211222


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      ..++.+|.||+|+|..+
T Consensus       225 ~~~i~~D~vi~a~G~~p  241 (311)
T 2q0l_A          225 KRELVVPGFFIFVGYDV  241 (311)
T ss_dssp             EEEEECSEEEECSCEEE
T ss_pred             eEEEecCEEEEEecCcc
Confidence            34799999999999543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.33  E-value=0.0029  Score=61.67  Aligned_cols=101  Identities=18%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..+|+|||+|..|+-.|..|++  .+.+|+++++....             .     .           ....       
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~--~g~~V~~v~~~~~~-------------~-----~-----------~~~~-------  193 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLD--TARRITLIHRRPQF-------------R-----A-----------HEAS-------  193 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTT--TSSEEEEECSSSSC-------------C-----S-----------CHHH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEcCCcc-------------C-----c-----------cHHH-------
Confidence            3589999999999999999998  68899999854210             0     0           0000       


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                         .+.+.+.+++.||+++++++|.++..++  +...|++....++..
T Consensus       194 -----------------------------------~~~l~~~l~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  236 (335)
T 2zbw_A          194 -----------------------------------VKELMKAHEEGRLEVLTPYELRRVEGDE--RVRWAVVFHNQTQEE  236 (335)
T ss_dssp             -----------------------------------HHHHHHHHHTTSSEEETTEEEEEEEESS--SEEEEEEEETTTCCE
T ss_pred             -----------------------------------HHHHHhccccCCeEEecCCcceeEccCC--CeeEEEEEECCCCce
Confidence                                               0123344567799999999999998743  544566652112223


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|..+
T Consensus       237 ~~i~~D~vi~a~G~~p  252 (335)
T 2zbw_A          237 LALEVDAVLILAGYIT  252 (335)
T ss_dssp             EEEECSEEEECCCEEE
T ss_pred             EEEecCEEEEeecCCC
Confidence            6899999999999655

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.29  E-value=0.0029  Score=66.27  Aligned_cols=102  Identities=15%  Similarity=0.099  Sum_probs=67.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+++|||||..|+-.|..+++  .|.+|+|+++..+.+             .   .+                       
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~l~-------------~---~d-----------------------  249 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRSILLR-------------G---FD-----------------------  249 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCSST-------------T---SC-----------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHH--cCCeEEEEecccccc-------------c---CC-----------------------
Confidence            469999999999999999998  688999998642210             0   00                       


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC--CCeEEEEEeecccCc
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA--GRKFLLKVEKRTMNL  208 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--~~~~~V~~~~~~~~~  208 (481)
                                                     .++.+.+.+.+++.||++++++.+.++...++  ++.+.+.... .+++
T Consensus       250 -------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~-~~g~  297 (519)
T 3qfa_A          250 -------------------------------QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQS-TNSE  297 (519)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEE-SSSS
T ss_pred             -------------------------------HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEE-CCCc
Confidence                                           01123344556678999999998888865320  1345555432 1111


Q ss_pred             -eEEEEcCeEEEccCCCh
Q 011610          209 -VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 -~~~i~ad~VIlAtG~~g  225 (481)
                       ...+.+|.||+|+|-.+
T Consensus       298 ~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          298 EIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             CEEEEEESEEEECSCEEE
T ss_pred             EEEEEECCEEEEecCCcc
Confidence             14678999999999654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.28  E-value=0.0031  Score=60.82  Aligned_cols=108  Identities=18%  Similarity=0.224  Sum_probs=75.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|..|+-+|..|++  .+.+|+++++....             ..    +            .          
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~--~g~~v~~~~~~~~~-------------~~----~------------~----------  193 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSS--YSTKVYLIHRRDTF-------------KA----Q------------P----------  193 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HSSEEEEECSSSSC-------------CS----C------------H----------
T ss_pred             CEEEEECCCHHHHHHHHHHHH--hCCeEEEEEeCCCC-------------Cc----C------------H----------
Confidence            589999999999999999998  57889998854211             00    0            0          


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHH-HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEA-KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~-~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                         +                                 +.+.+ ++.||+++++++|.++..++  +...|++.+...+..
T Consensus       194 ---~---------------------------------~~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  235 (323)
T 3f8d_A          194 ---I---------------------------------YVETVKKKPNVEFVLNSVVKEIKGDK--VVKQVVVENLKTGEI  235 (323)
T ss_dssp             ---H---------------------------------HHHHHHTCTTEEEECSEEEEEEEESS--SEEEEEEEETTTCCE
T ss_pred             ---H---------------------------------HHHHHHhCCCcEEEeCCEEEEEeccC--ceeEEEEEECCCCce
Confidence               0                                 00122 23599999999999998653  555676654222333


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .++.+|.||+|+|..+. ..+++.+|+.+
T Consensus       236 ~~~~~D~vv~a~G~~p~-~~~~~~~g~~~  263 (323)
T 3f8d_A          236 KELNVNGVFIEIGFDPP-TDFAKSNGIET  263 (323)
T ss_dssp             EEEECSEEEECCCEECC-HHHHHHTTCCB
T ss_pred             EEEEcCEEEEEECCCCC-hhHHhhcCeee
Confidence            57999999999997664 24677777665

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.22  E-value=0.00024  Score=77.68  Aligned_cols=38  Identities=18%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+||+|||||++|++||+.|++  .|++|+|+|+. .+|
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~--~G~~Vtlie~~~~~G  425 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIG  425 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTT
T ss_pred             cCCceEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcC
Confidence            346899999999999999999999  79999999975 454

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.22  E-value=0.00029  Score=76.17  Aligned_cols=39  Identities=15%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS   88 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~   88 (481)
                      ...+||+|||||++|+++|+.|++  .|++|+|+|+ +.+|+
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGG  144 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCC
Confidence            456899999999999999999999  7999999995 56764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.21  E-value=0.0043  Score=60.31  Aligned_cols=96  Identities=20%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||+|..|+-.|..|++  .+.+|+++++....             .    .+            .          
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~-------------~----~~------------~----------  191 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTK--FADEVTVIHRRDTL-------------R----AN------------K----------  191 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--TCSEEEEECSSSSC-------------C----SC------------H----------
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCEEEEEeCCCcC-------------C----cc------------h----------
Confidence            589999999999999999998  68899999854211             0    00            0          


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                          .+.+.+. +.||+++++++|+++..++  +...|++.+..++..
T Consensus       192 ------------------------------------~~~~~l~~~~gv~i~~~~~v~~i~~~~--~v~~v~~~~~~~g~~  233 (325)
T 2q7v_A          192 ------------------------------------VAQARAFANPKMKFIWDTAVEEIQGAD--SVSGVKLRNLKTGEV  233 (325)
T ss_dssp             ------------------------------------HHHHHHHTCTTEEEECSEEEEEEEESS--SEEEEEEEETTTCCE
T ss_pred             ------------------------------------HHHHHHHhcCCceEecCCceEEEccCC--cEEEEEEEECCCCcE
Confidence                                                0011122 3589999999999998643  444566652112223


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|-.+
T Consensus       234 ~~i~~D~vi~a~G~~p  249 (325)
T 2q7v_A          234 SELATDGVFIFIGHVP  249 (325)
T ss_dssp             EEEECSEEEECSCEEE
T ss_pred             EEEEcCEEEEccCCCC
Confidence            5799999999999654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.20  E-value=0.0031  Score=61.17  Aligned_cols=97  Identities=19%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..+|+|||+|..|+-+|..|++  .+.+|+++++....                ...+                 .    
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~--~~~~v~~~~~~~~~----------------~~~~-----------------~----  194 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEP--IAKEVSIIHRRDKF----------------RAHE-----------------H----  194 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTT--TBSEEEEECSSSSC----------------SSCH-----------------H----
T ss_pred             CCEEEEECCCHhHHHHHHHHHh--hCCeEEEEEecCcC----------------CccH-----------------H----
Confidence            3589999999999999999998  67889988854210                0000                 0    


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                          .                                  .+.+++.||+++.+++|.++..++  +...|.+.+...+.+
T Consensus       195 ----~----------------------------------~~~l~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  234 (332)
T 3lzw_A          195 ----S----------------------------------VENLHASKVNVLTPFVPAELIGED--KIEQLVLEEVKGDRK  234 (332)
T ss_dssp             ----H----------------------------------HHHHHHSSCEEETTEEEEEEECSS--SCCEEEEEETTSCCE
T ss_pred             ----H----------------------------------HHHHhcCCeEEEeCceeeEEecCC--ceEEEEEEecCCCce
Confidence                0                                  112456799999999999998764  455666664333445


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|..+
T Consensus       235 ~~~~~D~vv~a~G~~p  250 (332)
T 3lzw_A          235 EILEIDDLIVNYGFVS  250 (332)
T ss_dssp             EEEECSEEEECCCEEC
T ss_pred             EEEECCEEEEeeccCC
Confidence            7899999999999544

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.20  E-value=0.0024  Score=62.22  Aligned_cols=99  Identities=20%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..+|+|||+|..|+-+|..|++  .+.+|+++++....                ..             ...+       
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~--~g~~V~lv~~~~~~----------------~~-------------~~~~-------  200 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDAF----------------RA-------------SKIM-------  200 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSSSC----------------CS-------------CHHH-------
T ss_pred             CCeEEEECCChHHHHHHHHHHh--cCCeEEEEecCCcC----------------Cc-------------cHHH-------
Confidence            3589999999999999999998  68899999864211                00             0000       


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC--CeEEEEEeecccC
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG--RKFLLKVEKRTMN  207 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--~~~~V~~~~~~~~  207 (481)
                                                            ..+.+++.||+++++++|.++..++ +  ....|.+.+..++
T Consensus       201 --------------------------------------~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~v~~v~~~~~~~g  241 (333)
T 1vdc_A          201 --------------------------------------QQRALSNPKIDVIWNSSVVEAYGDG-ERDVLGGLKVKNVVTG  241 (333)
T ss_dssp             --------------------------------------HHHHHTCTTEEEECSEEEEEEEESS-SSSSEEEEEEEETTTC
T ss_pred             --------------------------------------HHHHHhCCCeeEecCCceEEEeCCC-CccceeeEEEEecCCC
Confidence                                                  0011235799999999999998754 2  2234555531123


Q ss_pred             ceEEEEcCeEEEccCCCh
Q 011610          208 LVECIEADYLLIASGSSQ  225 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~g  225 (481)
                      ...++.+|.||+|+|..+
T Consensus       242 ~~~~i~~D~vi~a~G~~p  259 (333)
T 1vdc_A          242 DVSDLKVSGLFFAIGHEP  259 (333)
T ss_dssp             CEEEEECSEEEECSCEEE
T ss_pred             ceEEEecCEEEEEeCCcc
Confidence            346899999999999644

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.11  E-value=0.0038  Score=60.01  Aligned_cols=95  Identities=15%  Similarity=0.140  Sum_probs=65.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ..|+|||+|+.|+-+|..|++  .+.+|+++++....                .  .           ..          
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~--~g~~v~~~~~~~~~----------------~--~-----------~~----------  186 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLAN--ICSKIYLIHRRDEF----------------R--A-----------AP----------  186 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHT--TSSEEEEECSSSSC----------------B--S-----------CH----------
T ss_pred             CEEEEECCCHHHHHHHHHHHh--hCCEEEEEEeCCCC----------------C--C-----------CH----------
Confidence            589999999999999999998  68889988853210                0  0           00          


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                                         ..+.+.+++.||+++++++|.++..++ +....|++.. .++...
T Consensus       187 -----------------------------------~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~~~v~~~~-~~g~~~  229 (315)
T 3r9u_A          187 -----------------------------------STVEKVKKNEKIELITSASVDEVYGDK-MGVAGVKVKL-KDGSIR  229 (315)
T ss_dssp             -----------------------------------HHHHHHHHCTTEEEECSCEEEEEEEET-TEEEEEEEEC-TTSCEE
T ss_pred             -----------------------------------HHHHHHHhcCCeEEEeCcEEEEEEcCC-CcEEEEEEEc-CCCCeE
Confidence                                               001112246799999999999998764 3334465551 122235


Q ss_pred             EEEcCeEEEccCC
Q 011610          211 CIEADYLLIASGS  223 (481)
Q Consensus       211 ~i~ad~VIlAtG~  223 (481)
                      ++.+|.||+|+|.
T Consensus       230 ~~~~D~vv~a~G~  242 (315)
T 3r9u_A          230 DLNVPGIFTFVGL  242 (315)
T ss_dssp             EECCSCEEECSCE
T ss_pred             EeecCeEEEEEcC
Confidence            7999999999994

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.10  E-value=0.00044  Score=74.96  Aligned_cols=38  Identities=29%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ...+||+|||||++|+.||..|++  .|++|+|+|+. .+|
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~g  409 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIG  409 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCC
Confidence            346899999999999999999999  78999999975 454

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.10  E-value=0.00043  Score=76.63  Aligned_cols=39  Identities=15%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS   88 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~   88 (481)
                      ...+||+|||||++||+||+.|++  .|++|+|+|+ +.+|+
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~--~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGG  315 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCcCCC
Confidence            356899999999999999999999  7999999995 56764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.05  E-value=0.0016  Score=66.68  Aligned_cols=104  Identities=12%  Similarity=0.168  Sum_probs=71.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||..|+-.|..+++  .|.+|+|+|+.. +.              ..  .+            ...       
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~ll--------------~~--~d------------~~~-------  190 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYE--RGLHPTLIHRSDKIN--------------KL--MD------------ADM-------  190 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSCCS--------------TT--SC------------GGG-------
T ss_pred             cEEEEECCccchhhhHHHHHh--cCCcceeeeeecccc--------------cc--cc------------chh-------
Confidence            479999999999999999999  689999999642 21              00  00            011       


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                         .+.+.+.+++.||+++++++|.+++.    .  .|.+++     +
T Consensus       191 -----------------------------------~~~~~~~l~~~gV~i~~~~~v~~~~~----~--~v~~~~-----g  224 (437)
T 4eqs_A          191 -----------------------------------NQPILDELDKREIPYRLNEEINAING----N--EITFKS-----G  224 (437)
T ss_dssp             -----------------------------------GHHHHHHHHHTTCCEEESCCEEEEET----T--EEEETT-----S
T ss_pred             -----------------------------------HHHHHHHhhccceEEEeccEEEEecC----C--eeeecC-----C
Confidence                                               11223345677999999999998853    2  255555     6


Q ss_pred             EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          210 ECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      +++.+|.||+|+|..+.. .+++..|+.+
T Consensus       225 ~~~~~D~vl~a~G~~Pn~-~~~~~~gl~~  252 (437)
T 4eqs_A          225 KVEHYDMIIEGVGTHPNS-KFIESSNIKL  252 (437)
T ss_dssp             CEEECSEEEECCCEEESC-GGGTTSSCCC
T ss_pred             eEEeeeeEEEEeceecCc-HHHHhhhhhh
Confidence            789999999999965532 2444555543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.01  E-value=0.0038  Score=61.08  Aligned_cols=98  Identities=14%  Similarity=0.211  Sum_probs=66.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..+|+|||+|..|+-.|..|++  .+.+|+++++....             .   .             ...+       
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~--~g~~V~l~~~~~~~-------------~---~-------------~~~~-------  196 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTR--FARSVTLVHRRDEF-------------R---A-------------SKIM-------  196 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTT--TCSEEEEECSSSSC-------------S---S-------------CTTH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--hCCeEEEEEcCCcC-------------C---c-------------cHHH-------
Confidence            3689999999999999999998  68899999854210             0   0             0000       


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                         .   .+.+++.||+++++++|.++..++  +...|.+.+..++..
T Consensus       197 -----------------------------------~---~~~~~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  236 (335)
T 2a87_A          197 -----------------------------------L---DRARNNDKIRFLTNHTVVAVDGDT--TVTGLRVRDTNTGAE  236 (335)
T ss_dssp             -----------------------------------H---HHHHHCTTEEEECSEEEEEEECSS--SCCEEEEEEETTSCC
T ss_pred             -----------------------------------H---HHHhccCCcEEEeCceeEEEecCC--cEeEEEEEEcCCCce
Confidence                                               0   011235799999999999998653  333455442112223


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|..+
T Consensus       237 ~~i~~D~vi~a~G~~p  252 (335)
T 2a87_A          237 TTLPVTGVFVAIGHEP  252 (335)
T ss_dssp             EEECCSCEEECSCEEE
T ss_pred             EEeecCEEEEccCCcc
Confidence            6899999999999654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.99  E-value=0.0038  Score=61.65  Aligned_cols=106  Identities=15%  Similarity=0.200  Sum_probs=69.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ..|+|||+|.+|+-+|..|++  .|.+|+++++....             .... .+            ..+      .+
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~--~g~~V~lv~~~~~~-------------~~~~-~d------------~~~------~~  212 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAK--NGSDIALYTSTTGL-------------NDPD-AD------------PSV------RL  212 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECC------------------------------------CTT------SC
T ss_pred             CEEEEECCCcCHHHHHHHHHh--cCCeEEEEecCCCC-------------CCCC-CC------------CCc------cC
Confidence            489999999999999999998  68899999964211             0000 00            000      00


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                    ...+.+.+.+.+++.| ++++.+++|.++..++  +.+.|++.+     +
T Consensus       213 ------------------------------~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~--~~~~v~~~~-----g  255 (369)
T 3d1c_A          213 ------------------------------SPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNN--GQYHISFDS-----G  255 (369)
T ss_dssp             ------------------------------CHHHHHHHHHHHHTTCCEEEECSCCEEEEEEET--TEEEEEESS-----S
T ss_pred             ------------------------------CHHHHHHHHHHHhhCCcEEEecCcEEEEEEecC--CceEEEecC-----C
Confidence                                          0122334444556776 9999999999997654  556677765     4


Q ss_pred             EEEE-cCeEEEccCCChhH
Q 011610          210 ECIE-ADYLLIASGSSQQG  227 (481)
Q Consensus       210 ~~i~-ad~VIlAtG~~g~g  227 (481)
                      ..+. +|.||+|+|..+..
T Consensus       256 ~~~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          256 QSVHTPHEPILATGFDATK  274 (369)
T ss_dssp             CCEEESSCCEECCCBCGGG
T ss_pred             eEeccCCceEEeeccCCcc
Confidence            4454 69999999976643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.98  E-value=0.0087  Score=63.69  Aligned_cols=32  Identities=13%  Similarity=0.068  Sum_probs=28.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLAS--LGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCEEEEEECC
Confidence            479999999999999999999  68899999964

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.88  E-value=0.0022  Score=67.59  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=30.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ..+|+|||+|.+|+-+|..|++  .+.+|+++++..
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~  211 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAP--EVEHLTVFVRTP  211 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT--TCSEEEEEESSC
T ss_pred             cceEEEECCCchHHHHHHHHHh--hCCEEEEEECCC
Confidence            4689999999999999999998  689999999653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.85  E-value=0.0027  Score=65.42  Aligned_cols=112  Identities=21%  Similarity=0.216  Sum_probs=71.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ...|+|||||..|+-.|..+++  .|.+|+++++.. +..             . . .+            .        
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~-------------~-~-~d------------~--------  214 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRL--MGVQTHIIEMLDRALI-------------T-L-ED------------Q--------  214 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCT-------------T-S-CC------------H--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCcCCC-------------C-C-CC------------H--------
Confidence            3589999999999999999999  689999999642 210             0 0 00            0        


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                           ++                             .+.+.+.++   |+++++++|.++..++ ++.+.|.+.+ .++.
T Consensus       215 -----~~-----------------------------~~~l~~~l~---v~i~~~~~v~~i~~~~-~~~v~v~~~~-~~G~  255 (466)
T 3l8k_A          215 -----DI-----------------------------VNTLLSILK---LNIKFNSPVTEVKKIK-DDEYEVIYST-KDGS  255 (466)
T ss_dssp             -----HH-----------------------------HHHHHHHHC---CCEECSCCEEEEEEEE-TTEEEEEECC-TTSC
T ss_pred             -----HH-----------------------------HHHHHhcCE---EEEEECCEEEEEEEcC-CCcEEEEEEe-cCCc
Confidence                 11                             111111111   8999999999998642 2456666651 1122


Q ss_pred             eEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610          209 VECIEADYLLIASGSSQQGHRL-AAQLGHSI  238 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i  238 (481)
                      ..++.+|.||+|+|..+... + ++.+|+++
T Consensus       256 ~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~  285 (466)
T 3l8k_A          256 KKSIFTNSVVLAAGRRPVIP-EGAREIGLSI  285 (466)
T ss_dssp             CEEEEESCEEECCCEEECCC-TTTGGGTCCB
T ss_pred             eEEEEcCEEEECcCCCcccc-cchhhcCcee
Confidence            34899999999999765433 3 45556554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.73  E-value=0.01  Score=62.15  Aligned_cols=97  Identities=20%  Similarity=0.274  Sum_probs=67.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+|+|||||.+|+-+|..|++  .+.+|+++++....             .    .+                 .     
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~--~g~~Vtlv~~~~~l-------------~----~~-----------------~-----  394 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPEM-------------K----AD-----------------Q-----  394 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--HBSEEEEECSSSSC-------------C----SC-----------------H-----
T ss_pred             CeEEEECCCHHHHHHHHHHHh--hCCEEEEEEeCccc-------------C----cC-----------------H-----
Confidence            589999999999999999998  57899999853211             0    00                 0     


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                          .+.+.+.+ .||++++++.|+++..++ +....|++.+..++..
T Consensus       395 ------------------------------------~l~~~l~~~~gV~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~  437 (521)
T 1hyu_A          395 ------------------------------------VLQDKVRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDI  437 (521)
T ss_dssp             ------------------------------------HHHHHHTTCTTEEEECSEEEEEEEECS-SSEEEEEEEETTTCCE
T ss_pred             ------------------------------------HHHHHHhcCCCcEEEeCCEEEEEEcCC-CcEEEEEEEeCCCCce
Confidence                                                01122233 489999999999998754 3434566654222334


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      ..+.+|.||+|+|..+
T Consensus       438 ~~i~~D~vi~a~G~~p  453 (521)
T 1hyu_A          438 HSVALAGIFVQIGLLP  453 (521)
T ss_dssp             EEEECSEEEECCCEEE
T ss_pred             EEEEcCEEEECcCCCC
Confidence            5799999999999543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.71  E-value=0.0019  Score=68.16  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ..+|+|||+|++|+-+|..|++  .+.+|+++++..
T Consensus       185 ~krV~VIG~G~tgve~a~~la~--~~~~Vtv~~r~~  218 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAE--TAKELYVFQRTP  218 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTT--TBSEEEEEESSC
T ss_pred             CCeEEEECCCccHHHHHHHHHh--hCCEEEEEEcCC
Confidence            4589999999999999999998  688999999653

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.44  E-value=0.0012  Score=71.34  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=40.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCEEEcCceEE--EEEecCCCC------eEEEEEeecccCceEEEEcCeEEEccC
Q 011610          158 SDSSSSVIDCLLTEAKHRGVVLQTGKVVT--TASSDNAGR------KFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       158 ~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~--~i~~~~~~~------~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      ......+.+.|.+.+.+ |..|+++++|+  +|..++ ++      .+.|+...  .+...++.||+||+|+-
T Consensus       343 ~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~-~g~~~~~~~V~V~~~~--~G~~~~~~aD~VIvTvP  411 (721)
T 3ayj_A          343 VTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANAC-HSGTASARAQLLSYDS--HNAVHSEAYDFVILAVP  411 (721)
T ss_dssp             SSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEE-ECSSSSCCEEEEEEET--TCCEEEEEESEEEECSC
T ss_pred             CCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECC-CCCccccceEEEEEec--CCceEEEEcCEEEECCC
Confidence            34567788888887643 44567799999  998764 23      36664431  12223799999999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.43  E-value=0.0068  Score=62.37  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|+|||||..|+-+|..+.+  .|. +|+++++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r--~Ga~~Vtiv~r~  297 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIR--QGATSVKCLYRR  297 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSS
T ss_pred             CCEEEEECCChhHHHHHHHHHH--cCCCEEEEEEeC
Confidence            4689999999999999999988  566 49999854

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.42  E-value=0.026  Score=58.04  Aligned_cols=50  Identities=12%  Similarity=0.045  Sum_probs=33.4

Q ss_pred             CCCEEEcCceEEEEEecCCCC-eE-EEEEeecc------------cCceEEEEcCeEEEccCCCh
Q 011610          175 RGVVLQTGKVVTTASSDNAGR-KF-LLKVEKRT------------MNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       175 ~Gv~i~~~~~V~~i~~~~~~~-~~-~V~~~~~~------------~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .|+++++++.+.+|..++ ++ .+ .|++....            ++...++.+|.||.|+|-.+
T Consensus       270 ~gv~~~~~~~~~~i~~~~-~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p  333 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSP-DGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKS  333 (460)
T ss_dssp             EEEEEECSEEEEEEEECT-TSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEEC
T ss_pred             ceEEEECCCChheEEcCC-CCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCC
Confidence            789999999999997642 13 22 34443100            12236899999999999544

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.35  E-value=0.0067  Score=57.69  Aligned_cols=86  Identities=10%  Similarity=0.029  Sum_probs=61.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..+|+|||+|+.|+-.|..|++  .| +|+++++...                 .                 +.      
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~--~g-~v~~v~~~~~-----------------~-----------------~~------  177 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPD--WG-ETTFFTNGIV-----------------E-----------------PD------  177 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGG--TS-EEEEECTTTC-----------------C-----------------CC------
T ss_pred             CCEEEEEecCccHHHHHHHhhh--cC-cEEEEECCCC-----------------C-----------------CC------
Confidence            3689999999999999999998  56 8888874321                 0                 00      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                          ..+.+.+++.||+++. ++|.++..+   +  .|.+.+     +
T Consensus       178 ------------------------------------~~~~~~l~~~gv~i~~-~~v~~i~~~---~--~v~~~~-----g  210 (297)
T 3fbs_A          178 ------------------------------------ADQHALLAARGVRVET-TRIREIAGH---A--DVVLAD-----G  210 (297)
T ss_dssp             ------------------------------------HHHHHHHHHTTCEEEC-SCEEEEETT---E--EEEETT-----S
T ss_pred             ------------------------------------HHHHHHHHHCCcEEEc-ceeeeeecC---C--eEEeCC-----C
Confidence                                                0012344567999985 899998642   2  566665     5


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      .++.+|.||+|+|..+
T Consensus       211 ~~~~~D~vi~a~G~~p  226 (297)
T 3fbs_A          211 RSIALAGLFTQPKLRI  226 (297)
T ss_dssp             CEEEESEEEECCEEEC
T ss_pred             CEEEEEEEEEccCccc
Confidence            7899999999999543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.20  E-value=0.019  Score=59.01  Aligned_cols=59  Identities=14%  Similarity=0.085  Sum_probs=37.3

Q ss_pred             HHHHHHHHHh------CCCEEEcCceEEEEEecCCCCeEEEEEeec-------------ccCceEEEEcCeEEEccCCCh
Q 011610          165 IDCLLTEAKH------RGVVLQTGKVVTTASSDNAGRKFLLKVEKR-------------TMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       165 ~~~l~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~-------------~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .+.|.+.+.+      .|+++++++.+.++..++  ....|++.+.             .++...++.||.||.|+|-.+
T Consensus       249 ~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p  326 (456)
T 1lqt_A          249 IKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKR--KVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG  326 (456)
T ss_dssp             HHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSS--SCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEEC
T ss_pred             HHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCC--cEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEcccccc
Confidence            3445555555      689999999999997542  3222433210             011125799999999999544

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.97  E-value=0.042  Score=62.33  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=28.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..+++  .|. +|+|+++.
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~--~G~~~Vtvv~r~  365 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALR--CGARRVFLVFRK  365 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSS
T ss_pred             CcEEEECCChHHHHHHHHHHH--cCCCEEEEEEec
Confidence            489999999999999999998  575 89999854

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.87  E-value=0.11  Score=49.77  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+|+.
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~--~G~~Vt~v~~~  184 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTK--YGSKVIILHRR  184 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT--TSSEEEEECSS
T ss_pred             CeEEEECCChHHHHHHHHHHH--hCCeeeeeccc
Confidence            589999999999999999999  78999999953

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.78  E-value=0.0088  Score=63.88  Aligned_cols=64  Identities=13%  Similarity=0.105  Sum_probs=48.6

Q ss_pred             CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CCeEEEEEeecccCceEEEEcCeEEEcc
Q 011610          152 GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GRKFLLKVEKRTMNLVECIEADYLLIAS  221 (481)
Q Consensus       152 g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~i~ad~VIlAt  221 (481)
                      +..||.. ....+.++|.+.++..|++|+++++|.+|..+++ +...+|+..+     |+++.||+||...
T Consensus       369 g~~yp~G-G~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~-----Ge~i~A~~VVs~~  433 (650)
T 1vg0_A          369 PFLFPLY-GQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQF-----GQRIISKHFIIED  433 (650)
T ss_dssp             SEEEETT-CTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETT-----SCEEECSEEEEEG
T ss_pred             ceEEeCC-chhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCC-----CCEEEcCEEEECh
Confidence            4566654 4678889999999999999999999999987641 2344566544     6789999998743

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.68  E-value=0.005  Score=64.96  Aligned_cols=34  Identities=12%  Similarity=0.262  Sum_probs=30.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ..+|+|||+|++|+-+|..|++  .+.+|+++++..
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~  224 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAE--QAEQLFVFQRSA  224 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESSC
T ss_pred             CCEEEEECCCchHHHHHHHHHh--hCCEEEEEECCC
Confidence            4689999999999999999998  578999999653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.13  E-value=0.053  Score=59.11  Aligned_cols=34  Identities=15%  Similarity=0.016  Sum_probs=29.6

Q ss_pred             CCeEEEEC--CchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVG--GGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIG--gG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ..+|+|||  ||..|+-+|..|++  .|.+|+|+++..
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~--~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHH--cCCEEEEEeccc
Confidence            35899999  99999999999999  688999999543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.12  E-value=0.027  Score=57.51  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=28.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~~   84 (481)
                      ..+|+|||+|.+|+-.|..|++  .+.+ |+|+++.
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~--~~~~~V~l~~r~  245 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTP--VAKHPIYQSLLG  245 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTT--TSCSSEEEECTT
T ss_pred             CCEEEEEccCcCHHHHHHHHHH--HhCCcEEEEeCC
Confidence            3579999999999999999998  5777 8888853

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=94.93  E-value=0.092  Score=59.08  Aligned_cols=94  Identities=20%  Similarity=0.221  Sum_probs=65.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ..|+|||+|..|+-+|..|++  .|.+|+|+|+....                   .                .      
T Consensus       285 k~vvViGgG~~g~E~A~~L~~--~G~~Vtvv~~~~~~-------------------~----------------~------  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAA--TGGVVAVIDARSSI-------------------S----------------A------  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGG--GTCCSEEEESCSSC-------------------C----------------H------
T ss_pred             CeEEEEcCCHHHHHHHHHHHH--cCCcEEEEECCCcc-------------------c----------------h------
Confidence            579999999999999999998  67889999853210                   0                0      


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEec-CCCCeEEEEEeec-c---
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSD-NAGRKFLLKVEKR-T---  205 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~~~~~V~~~~~-~---  205 (481)
                         .                                  .+.+++.||+|++++.|.++..+ + +....|++.+. .   
T Consensus       322 ---~----------------------------------~~~l~~~GV~v~~~~~v~~i~~~~~-~~v~~v~~~~~~~~~~  363 (965)
T 2gag_A          322 ---A----------------------------------AAQAVADGVQVISGSVVVDTEADEN-GELSAIVVAELDEARE  363 (965)
T ss_dssp             ---H----------------------------------HHHHHHTTCCEEETEEEEEEEECTT-SCEEEEEEEEECTTCC
T ss_pred             ---h----------------------------------HHHHHhCCeEEEeCCEeEEEeccCC-CCEEEEEEEeccccCC
Confidence               0                                  12345679999999999999873 2 24334555420 0   


Q ss_pred             cCceEEEEcCeEEEccCCCh
Q 011610          206 MNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       206 ~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .+...++.+|.||+|+|-.+
T Consensus       364 ~G~~~~i~~D~Vv~a~G~~P  383 (965)
T 2gag_A          364 LGGTQRFEADVLAVAGGFNP  383 (965)
T ss_dssp             EEEEEEEECSEEEEECCEEE
T ss_pred             CCceEEEEcCEEEECCCcCc
Confidence            11136899999999999543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.83  E-value=0.041  Score=46.46  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=31.8

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+-.|+|||+|..|...|..|.+  .|++|+++|++
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~   39 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETS   39 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECC
Confidence            3455689999999999999999998  78999999965

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.25  E-value=0.26  Score=53.02  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=37.7

Q ss_pred             HHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          166 DCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       166 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..+.+.+++.||+++++++|+++..    +.+.++ .+   +...++.+|.||+|+|..+
T Consensus       577 ~~~~~~l~~~GV~v~~~~~v~~i~~----~~v~~~-~~---G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          577 WIHRTTLLSRGVKMIPGVSYQKIDD----DGLHVV-IN---GETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEEET----TEEEEE-ET---TEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEeC----CeEEEe-cC---CeEEEEeCCEEEECCCccc
Confidence            3455677889999999999999862    334443 32   2236799999999999654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=94.03  E-value=0.51  Score=48.77  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=28.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||+|.+|.-.|..|++...+.+|.++=|.
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~  280 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRD  280 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            4799999999999999999875457889888754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.99  E-value=0.064  Score=46.05  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=30.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|+|||+|..|...|..|.+  .|.+|+++|++
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~   51 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKN   51 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            34689999999999999999998  68999999965

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.89  E-value=0.061  Score=44.74  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .++|+|||+|..|...|..|++  .|.+|+++|++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            3589999999999999999998  68999999964

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=93.68  E-value=0.045  Score=52.51  Aligned_cols=42  Identities=21%  Similarity=0.210  Sum_probs=31.9

Q ss_pred             ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHh
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA  474 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~  474 (481)
                      .+.+||+|+||   |+.+. +-.++.+|...|++||.++.++..++
T Consensus       261 ~Ts~p~IyA~G---Dv~~~-~~~~~~~A~~~G~~AA~~i~~~L~~e  302 (304)
T 4fk1_A          261 RTSEKNIYLAG---ETTTQ-GPSSLIIAASQGNKAAIAINSDITDE  302 (304)
T ss_dssp             BCSSTTEEECS---HHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEe---ccCCC-cchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46899999999   55431 11257889999999999998887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.53  E-value=0.08  Score=44.46  Aligned_cols=33  Identities=24%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +..|+|+|+|..|...|..|.+  .|++|+++|++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence            3579999999999999999998  78999999965

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.20  E-value=0.082  Score=42.46  Aligned_cols=33  Identities=27%  Similarity=0.305  Sum_probs=29.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~   84 (481)
                      ...|+|+|+|..|...+..|.+  .| .+|++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKT--SSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCC
Confidence            4689999999999999999998  67 899999965

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.15  E-value=0.15  Score=49.00  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..+++  .|++|+++|++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~--~G~~V~~~d~~   47 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQT   47 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            3579999999999999999998  78999999965

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=92.06  E-value=0.73  Score=48.09  Aligned_cols=33  Identities=12%  Similarity=0.305  Sum_probs=29.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||+|.+|+-.|..+++  .+.+|+++++.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~--~~~~vtv~~r~  218 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAK--QAAELFVFQRT  218 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESS
T ss_pred             CCEEEEECCCccHHHHHHHHhh--cCceEEEEEcC
Confidence            3689999999999999999998  57899999964

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=91.98  E-value=0.13  Score=49.25  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+|+.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~  177 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTK--FADKVTIVHRR  177 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--TCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCEEEEEecc
Confidence            489999999999999999998  68999999954

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=91.80  E-value=0.14  Score=49.78  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=29.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|.|||+|..|...|..++.  .|++|+|+|.+
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~--~G~~V~l~D~~   38 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIE   38 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSC
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh--CCCeEEEEECC
Confidence            34689999999999999999998  79999999954

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=91.76  E-value=0.15  Score=49.47  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      .++|+|||+|..|.+.|..|++  .|.+|++++++.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~   35 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAK--TGHCVSVVSRSD   35 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHH--TTCEEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCh
Confidence            3689999999999999999999  689999999764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=91.53  E-value=0.17  Score=42.09  Aligned_cols=32  Identities=16%  Similarity=0.133  Sum_probs=28.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|+|+|+|..|...|..|.+  .|.+|+++|++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            469999999999999999998  68899999964

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.52  E-value=0.22  Score=42.51  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|+|+|+|..|...|..|.+  .|.+|+++|++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQ--RGQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEECC
Confidence            479999999999999999998  68999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=91.44  E-value=0.13  Score=51.46  Aligned_cols=32  Identities=19%  Similarity=0.066  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+|+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~--~g~~Vtvv~~~  178 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIID--SGTPASIGIIL  178 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--HTCCEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCeEEEEEcC
Confidence            579999999999999999999  68999999964

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.22  E-value=0.17  Score=52.31  Aligned_cols=61  Identities=15%  Similarity=0.094  Sum_probs=47.9

Q ss_pred             HHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          170 TEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       170 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      +.+++.||++++++.|.++..++  +...|.+.+     +.++.+|.||+|+|-.+.. .+++.+|+++
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~--~v~~v~~~~-----g~~i~aD~Vv~a~G~~p~~-~l~~~~g~~~  325 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNE--KVERVIDMN-----NHEYKVDALIFADGRRPDI-NPITQAGGKL  325 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSS--SCCEEEETT-----CCEEECSEEEECCCEEECC-HHHHHTTCCE
T ss_pred             HHHHhCCcEEEeCCeeEEEecCC--ceEEEEeCC-----CeEEEeCEEEECCCcCcCc-hHHHhcCCCc
Confidence            66778899999999999998653  444566654     5789999999999976652 5788888765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.09  E-value=0.2  Score=45.59  Aligned_cols=32  Identities=31%  Similarity=0.455  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.|+|||+|..|...|..|.+  .|.+|+++|++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~   32 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLS--RKYGVVIINKD   32 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            369999999999999999998  78999999965

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.05  E-value=0.22  Score=43.76  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=29.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~   84 (481)
                      ...|+|||+|..|...|..|.+  . |++|+++|++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~   72 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIR   72 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECC
Confidence            4579999999999999999998  6 8999999965

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=90.99  E-value=0.16  Score=49.14  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      .++|.|||+|..|.+.|..|++  .|.+|++++++.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~   35 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQR--SGEDVHFLLRRD   35 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHH--TSCCEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCc
Confidence            3689999999999999999999  689999999764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=90.92  E-value=0.075  Score=48.95  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             cccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHH
Q 011610          426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       426 t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~  470 (481)
                      +++.+.+||||++|++. +.|     ..++|+-+|+.+++++.+.
T Consensus       192 ~~~~t~~p~iya~G~~a-~~g-----~~~~~~~~g~~~a~~i~~~  230 (232)
T 2cul_A          192 TFRLKRLEGLYAVGLCV-REG-----DYARMSEEGKRLAEHLLHE  230 (232)
T ss_dssp             TTEETTSBSEEECGGGT-SCC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccceeeeecc-cCc-----cHHHHHHHHHHHHHHHHhh
Confidence            45556899999999887 555     6678899999999998654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=90.76  E-value=0.21  Score=48.21  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      .++|+|||+|..|...|..|++  .|.  +|+++|++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIA   41 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence            4689999999999999999998  677  89999965

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=90.39  E-value=0.71  Score=49.20  Aligned_cols=39  Identities=15%  Similarity=0.095  Sum_probs=34.5

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPL   87 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g   87 (481)
                      .+++|||+|||+|..|...|..|++  .|.+|++||+ +..|
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~--~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSYYG   44 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHh--CCCEEEEEcCCCccc
Confidence            3467999999999999999999999  7999999994 4666

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=90.27  E-value=0.28  Score=47.98  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=29.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|+|||+|..|...|..|++  .|+ +|+|+|.+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~   42 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVV   42 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECC
Confidence            4689999999999999999998  566 89999965

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=90.22  E-value=0.24  Score=49.12  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=30.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+++|||+|+.|+.+|..+++  .|.+|+|+|+.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~  177 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSS--GGYQLDVVAPC  177 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecC
Confidence            4689999999999999999999  78999999964

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.99  E-value=0.19  Score=48.19  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +++|+|||+|..|.+.|..|++  .|.+|++++++
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~--~g~~V~~~~r~   34 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQ--SLPHTTLIGRH   34 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHH--HCTTCEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHH--CCCeEEEEEec
Confidence            4689999999999999999998  57899999976

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=89.39  E-value=0.29  Score=49.80  Aligned_cols=32  Identities=25%  Similarity=0.123  Sum_probs=29.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+|+.
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~  199 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVING--LGAKTHLFEMF  199 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--cCCEEEEEEeC
Confidence            589999999999999999999  68999999965

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.16  E-value=0.34  Score=46.33  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=29.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +++|.|||+|..|...|..|++  .|++|++++++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~   35 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQ--GGNDVTLIDQW   35 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCeEEEECcCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            3589999999999999999998  68899999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=89.00  E-value=0.18  Score=51.09  Aligned_cols=108  Identities=14%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhc-cCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKT-VAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~-~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +.||+|||||++|+++|..|++ ..++.+|+|||+...-             ...   +             .+......
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~-------------~~~---~-------------~~~~~~~g   54 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF-------------QFV---P-------------SNPWVGVG   54 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE-------------ECG---G-------------GHHHHHHT
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC-------------ccc---C-------------CccccccC
Confidence            5799999999999999999987 2247899999965310             000   0             00000000


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                      ....                             .++...+.+.+++.|++++. .+|+.+..++  +  .|++++     
T Consensus        55 ~~~~-----------------------------~~~~~~l~~~~~~~gv~~~~-~~v~~id~~~--~--~V~~~~-----   95 (437)
T 3sx6_A           55 WKER-----------------------------DDIAFPIRHYVERKGIHFIA-QSAEQIDAEA--Q--NITLAD-----   95 (437)
T ss_dssp             SSCH-----------------------------HHHEEECHHHHHTTTCEEEC-SCEEEEETTT--T--EEEETT-----
T ss_pred             ccCH-----------------------------HHHHHHHHHHHHHCCCEEEE-eEEEEEEcCC--C--EEEECC-----
Confidence            0011                             11111233445678999974 6999997654  3  466665     


Q ss_pred             eEEEEcCeEEEccCCCh
Q 011610          209 VECIEADYLLIASGSSQ  225 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~g  225 (481)
                      +.++.+|+||+|||+.+
T Consensus        96 g~~i~~d~lviAtG~~~  112 (437)
T 3sx6_A           96 GNTVHYDYLMIATGPKL  112 (437)
T ss_dssp             SCEEECSEEEECCCCEE
T ss_pred             CCEEECCEEEECCCCCc
Confidence            56799999999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=88.93  E-value=0.39  Score=45.64  Aligned_cols=32  Identities=19%  Similarity=0.206  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..+++  .|++|+++|++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            589999999999999999998  79999999965

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=88.87  E-value=0.35  Score=48.50  Aligned_cols=33  Identities=33%  Similarity=0.552  Sum_probs=30.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|+|||||..|+-+|..|++  .|.+|+++|+.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~  177 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATART--AGVHVSLVETQ  177 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCEEEEEEeC
Confidence            4689999999999999999998  78999999964

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=88.82  E-value=0.83  Score=45.56  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      ...+.+.+.+.+++.||+++++++|++++.    +.  |.+++     ++++.+|.||+|+|..+.  .+++..|
T Consensus       217 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~----~~--v~~~~-----g~~~~~D~vi~a~G~~~~--~~l~~~~  278 (409)
T 3h8l_A          217 SPNSRKAVASIYNQLGIKLVHNFKIKEIRE----HE--IVDEK-----GNTIPADITILLPPYTGN--PALKNST  278 (409)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEECS----SE--EEETT-----SCEEECSEEEEECCEECC--HHHHTSC
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCceEEECC----Ce--EEECC-----CCEEeeeEEEECCCCCcc--HHHHhcc
Confidence            367788888899999999999999999963    22  56665     678999999999997653  3455553

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=88.77  E-value=0.42  Score=46.62  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|.|||+|..|...|..+++  .|+ +|+++|.+
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~   47 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDII   47 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECC
Confidence            3689999999999999999998  677 89999964

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=88.71  E-value=0.33  Score=49.34  Aligned_cols=31  Identities=13%  Similarity=0.179  Sum_probs=28.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ..|+|||.|.+|+++|..|++  .|++|++.|.
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~--~G~~v~~~D~   36 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDT   36 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHT--TTCCCEEEES
T ss_pred             CEEEEEeecHHHHHHHHHHHh--CCCEEEEEEC
Confidence            579999999999999999988  7999999994

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=88.69  E-value=0.4  Score=46.77  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||+|..|...|..|++  .|.+|++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~--~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLAL--AGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHH--TTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCEEEEEECh
Confidence            589999999999999999999  68999999964

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.51  E-value=0.39  Score=49.02  Aligned_cols=32  Identities=28%  Similarity=0.214  Sum_probs=29.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||+|..|+..|..|++  .|++|+++|++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~--~G~~V~~~D~~   34 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAE--LGANVRCIDTD   34 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--cCCEEEEEECC
Confidence            589999999999999999999  78999999965

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=88.50  E-value=0.34  Score=45.89  Aligned_cols=33  Identities=12%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ....|+|||||..|...|..|.+  .|++|+|++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~--~Ga~VtViap   44 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSP   44 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHh--CCCEEEEEcC
Confidence            35789999999999999999999  7899999984

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=88.45  E-value=0.42  Score=45.09  Aligned_cols=32  Identities=19%  Similarity=0.028  Sum_probs=29.0

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +|.|||+|..|...|..|++  .|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHh--CCCCEEEEEcCc
Confidence            69999999999999999998  789999999653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=88.43  E-value=0.44  Score=43.72  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=29.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ....|+|||||..|...|..|.+  .|.+|+|++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap   62 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAP   62 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGG--GCCCEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECC
Confidence            35789999999999999999999  6899999874

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=88.40  E-value=0.41  Score=46.59  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=30.4

Q ss_pred             CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +...+..+|.|||+|..|...|..|++  .|.+|+++++.
T Consensus         9 ~~~~~~~kI~iIG~G~mG~ala~~L~~--~G~~V~~~~r~   46 (335)
T 1z82_A            9 HHHHMEMRFFVLGAGSWGTVFAQMLHE--NGEEVILWARR   46 (335)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             cccccCCcEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence            344467899999999999999999998  78999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=88.34  E-value=0.68  Score=47.23  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|.|||+|..|...|..+++  .|++|+++|++
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~--aG~~V~l~D~~   86 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGL--AGIETFLVVRN   86 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECc
Confidence            34689999999999999999999  79999999965

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=88.26  E-value=0.42  Score=46.27  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=29.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ...|.|||+|..|...|..+++  .|+ +|+++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCC
Confidence            4689999999999999999998  577 89999965

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=88.22  E-value=0.39  Score=49.07  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+|+|+.
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~--~G~~Vtlv~~~  198 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRS--FGSEVTVVALE  198 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcC
Confidence            589999999999999999998  68999999964

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.21  E-value=0.27  Score=50.38  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+.|+|+|+|-.|...|..|.+  .|++|+|+|++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~--~~~~v~vId~d   35 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVG--ENNDITIVDKD   35 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCS--TTEEEEEEESC
T ss_pred             cCEEEEECCCHHHHHHHHHHHH--CCCCEEEEECC
Confidence            4689999999999999999988  68999999965

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.20  E-value=0.5  Score=46.60  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .++|.|||+|..|.+.|..|++  .|.+|.+++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~--~G~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLAR--KGQKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHT--TTCCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            4689999999999999999999  78999999975

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=88.00  E-value=0.32  Score=42.40  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=33.4

Q ss_pred             cccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhhh
Q 011610          426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLK  477 (481)
Q Consensus       426 t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~~  477 (481)
                      .|+. .+||+|++|   |+.+.... ..+.|...|+.|+.++........+.
T Consensus       130 ~~~t-~~~~i~a~G---D~~~~~~~-~~~~A~~~g~~aa~~i~~~~~~~~~~  176 (180)
T 2ywl_A          130 GGRT-SYPRVYAAG---VARGKVPG-HAIISAGDGAYVAVHLVSDLRGEPYK  176 (180)
T ss_dssp             TCBC-SSTTEEECG---GGGTCCSC-CHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CCCc-CCCCEEEee---cccCcchh-hHHHHHHhHHHHHHHHHHHhhhcccc
Confidence            4554 789999999   54433221 66889999999999998766554443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=87.69  E-value=0.49  Score=48.69  Aligned_cols=34  Identities=15%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      -.+.|.|||+|..|+..|..|++  .|++|+++|++
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~--~G~~V~~~d~~   40 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLAD--IGHDVFCLDVD   40 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            35799999999999999999999  78999999964

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=87.65  E-value=0.55  Score=42.41  Aligned_cols=33  Identities=12%  Similarity=0.055  Sum_probs=29.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..|++  .|.+|.+++++
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~--~g~~V~~~~~~   51 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEI--AGHEVTYYGSK   51 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH--TTCEEEEECTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            4689999999999999999998  68999999965

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=87.31  E-value=0.48  Score=48.85  Aligned_cols=33  Identities=15%  Similarity=0.170  Sum_probs=30.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|+|||||..|+-+|..+++  .|.+|+++|+.
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~  206 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSR--LGVIVKVFGRS  206 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHH--TTCEEEEECCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEEC
Confidence            3689999999999999999999  78999999965

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=87.27  E-value=0.46  Score=48.46  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||.|.+|+++|..|++  .|++|++.|..
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~   41 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGK   41 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            4689999999999999999999  79999999953

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.22  E-value=0.59  Score=45.10  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|+|||+|..|...|..|++...+.+|+++|++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3799999999999999999984237899999965

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=87.21  E-value=0.53  Score=45.28  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=28.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      ++|+|||+|..|...|..|+.  .|+  +|+++|.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~--~g~~~eV~L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVL--RGSCSELVLVDRD   34 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence            379999999999999999998  677  89999965

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.12  E-value=0.51  Score=47.29  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=29.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||+|++|+.+|..|..  .|.+|+++|+.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~  222 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARR--LGAVVSATDVR  222 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            4689999999999999999988  68999999954

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=87.12  E-value=0.65  Score=44.69  Aligned_cols=34  Identities=12%  Similarity=0.087  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+++|.|||.|..|...|..|++  .|++|+++|++
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~--~G~~V~~~dr~   53 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLK--NGFKVTVWNRT   53 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             cCCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            45789999999999999999999  78999999965

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=86.81  E-value=0.52  Score=43.97  Aligned_cols=36  Identities=14%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g   87 (481)
                      ...|+|||+|..|..+|..|++  .|. +++|+|++.+-
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~--~Gv~~i~lvD~d~v~   67 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS--AGVGNLTLLDFDTVS   67 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCCBCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH--cCCCeEEEEcCCCcc
Confidence            4689999999999999999999  565 89999977543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=86.69  E-value=0.35  Score=46.41  Aligned_cols=31  Identities=26%  Similarity=0.253  Sum_probs=28.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCC-----C-CcEEEEeC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAP-----K-LNVVIIEK   83 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~-----g-~~V~llE~   83 (481)
                      ++|.|||+|..|...|..|++  .     | .+|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~--~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLAL--RAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--HHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CccccCCCCCEEEEEc
Confidence            589999999999999999998  6     7 89999986

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=86.63  E-value=0.65  Score=44.80  Aligned_cols=33  Identities=18%  Similarity=0.359  Sum_probs=28.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      +.+|+|||+|..|...|..++.  .|. +|+++|.+
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~--~g~~~v~L~Di~   35 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAA--KELGDIVLLDIV   35 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCCeEEEEeCC
Confidence            3589999999999999999998  565 89999954

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=86.57  E-value=0.72  Score=44.79  Aligned_cols=33  Identities=27%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|+|||+|..|...|..++.  .|+ +|+++|.+
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~--~g~~~v~L~Di~   37 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIV   37 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCC
Confidence            3589999999999999999998  576 89999954

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=86.38  E-value=0.79  Score=46.89  Aligned_cols=33  Identities=27%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..+++  .|++|+++|++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~   69 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFAR--VGISVVAVESD   69 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            4579999999999999999998  79999999964

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=86.38  E-value=0.57  Score=46.16  Aligned_cols=31  Identities=26%  Similarity=0.202  Sum_probs=28.7

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +|.|||+|..|...|..|++  .|++|+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~--~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK--KCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            89999999999999999998  68899999965

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=86.35  E-value=2  Score=45.90  Aligned_cols=62  Identities=13%  Similarity=0.054  Sum_probs=43.4

Q ss_pred             eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc-cCceEEEEcCeEEEccC
Q 011610          154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT-MNLVECIEADYLLIASG  222 (481)
Q Consensus       154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~-~~~~~~i~ad~VIlAtG  222 (481)
                      .+...+....+.++|.+     +++|+++++|++|..++  +.+.|++.+.. .+.+.+++||+||+|+.
T Consensus       393 ~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~~--~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP  455 (662)
T 2z3y_A          393 HLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTA--SGCEVIAVNTRSTSQTFIYKCDAVLCTLP  455 (662)
T ss_dssp             CEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEET--TEEEEEEEESSCTTCEEEEEESEEEECCC
T ss_pred             eeeecCcHHHHHHHHHh-----cCceecCCeEEEEEECC--CcEEEEEeecccCCCCeEEEeCEEEECCC
Confidence            34334455566666543     67999999999999875  66777775311 12246899999999986

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=86.26  E-value=0.6  Score=46.76  Aligned_cols=33  Identities=39%  Similarity=0.573  Sum_probs=29.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|+|||+|..|+-+|..+++  .|.+|+++|+.
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtvv~~~  175 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARK--LGLSVTILEAG  175 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecC
Confidence            4689999999999999999999  78999999964

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=86.22  E-value=0.68  Score=46.99  Aligned_cols=36  Identities=28%  Similarity=0.166  Sum_probs=31.6

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+.+..|.|||.|-.|+..|..+++  .|++|+.+|-+
T Consensus        18 ~~~m~~IaViGlGYVGLp~A~~~A~--~G~~V~g~Did   53 (444)
T 3vtf_A           18 GSHMASLSVLGLGYVGVVHAVGFAL--LGHRVVGYDVN   53 (444)
T ss_dssp             TCCCCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            3356799999999999999999998  68999999944

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=86.00  E-value=0.69  Score=45.17  Aligned_cols=32  Identities=19%  Similarity=0.098  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||+|..|...|..|++  .|++|+++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~--~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            589999999999999999998  68999999965

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=85.85  E-value=0.62  Score=46.29  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=30.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ...+|+|+|||.+|+.+|..+..  .|. +|.++|+.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~--~Ga~~I~v~D~~  221 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLA--AGATKVTVVDKF  221 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHH--HTCCEEEEEETT
T ss_pred             CccEEEEECCCHHHHHHHHHHHH--cCCCeEEEEECC
Confidence            45799999999999999999988  477 99999965

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=85.84  E-value=0.66  Score=47.87  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|+|||||..|+-.|..|++  .|.+|+++|+.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~  208 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKR--LGIDSYIFARG  208 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSS
T ss_pred             CCeEEEECChHHHHHHHHHHHH--cCCeEEEEecC
Confidence            3589999999999999999998  68999999964

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=85.76  E-value=0.41  Score=40.24  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||+|..|...|..|++  .|.+|+++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~--~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSY--PQYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCT--TTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCC
Confidence            4689999999999999998887  67778887753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=85.76  E-value=0.65  Score=44.92  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|.|||+|..|.+.|..|++  .|.+|+++ +.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~--~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLAR--AGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHH--TTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCeEEEE-Ec
Confidence            4689999999999999999999  68899988 43

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=85.73  E-value=0.39  Score=43.51  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             cCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          430 KIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       430 k~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      ...+|+|+||   |.   ++|-.++.|+.||+.|++.++++.+
T Consensus       292 ~~~~~v~l~G---Da---~~g~gv~~A~~sG~~aA~~I~~~L~  328 (336)
T 3kkj_A          292 DADLGIYVCG---DW---CLSGRVEGAWLSGQEAARRLLEHLQ  328 (336)
T ss_dssp             ETTTTEEECC---GG---GTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             eCCCCEEEEe---cc---cCCcCHHHHHHHHHHHHHHHHHHhh
Confidence            3569999999   43   2233589999999999999987653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=85.68  E-value=0.61  Score=47.89  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCC-CC-cEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAP-KL-NVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~-g~-~V~llE~~~   85 (481)
                      .++|.|||+|..|+..|..|++  . |+ +|+++|++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~   53 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNS   53 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCh
Confidence            4689999999999999999999  6 89 999999653

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=85.40  E-value=0.81  Score=44.89  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=29.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +..|+|||||..|..+|+.+.+  .|++|+++|.+
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~--~G~~vv~vd~~   33 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKK--AGMKVVLVDKN   33 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            3579999999999999999988  79999999943

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=85.37  E-value=0.77  Score=46.24  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||.|..|...|..|.+  .|.+|++||++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d   36 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHD   36 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECC
Confidence            4579999999999999999998  78999999965

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=85.34  E-value=0.68  Score=44.24  Aligned_cols=33  Identities=21%  Similarity=0.093  Sum_probs=30.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|.|||.|..|...|..|++  .|++|+++|++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~--~G~~V~~~dr~   47 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE--WPGGVTVYDIR   47 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT--STTCEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            4689999999999999999999  78999999965

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=85.23  E-value=0.81  Score=43.99  Aligned_cols=32  Identities=19%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .++|+|||+|..|.+.|..|+ .  |.+|++++++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~--g~~V~~~~r~   33 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-L--YHDVTVVTRR   33 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-c--CCceEEEECC
Confidence            468999999999999999998 3  6899999975

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=85.19  E-value=0.18  Score=48.94  Aligned_cols=43  Identities=26%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             ccCCCCeEEEEEEee-cccCcc-hHHHHHHHHHHHHHHHHHhHHh
Q 011610          429 SKIHPRLFFAGEVLN-VDGVTG-GFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       429 sk~~~gLy~~GE~ld-v~g~~G-Gynl~~A~~sG~~AG~~aa~~~  471 (481)
                      .+.+||+|+||+++. ++|... |..+..+..||+.|++.+.++.
T Consensus       280 ~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~l  324 (326)
T 3fpz_A          280 YAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHF  324 (326)
T ss_dssp             CTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence            467899999996553 454332 3345567789999999987764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=85.11  E-value=0.85  Score=44.27  Aligned_cols=33  Identities=18%  Similarity=0.072  Sum_probs=28.5

Q ss_pred             CCeEEEECCchHHHH-HHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVY-GAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~-aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||.|.+|++ +|..|.+  .|++|.+.|+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~   37 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAK   37 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCC
Confidence            468999999999996 7778888  79999999954

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=85.05  E-value=0.84  Score=43.68  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=30.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +..+|.|||.|..|...|..|++  .|++|+++|++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~   39 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLR--AGLSTWGADLN   39 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence            34689999999999999999999  78999999965

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=85.02  E-value=0.65  Score=47.46  Aligned_cols=32  Identities=9%  Similarity=-0.033  Sum_probs=29.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||+|.+|+-.|..|++  .+.+|+++++.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~--~g~~V~li~~~  229 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYK--YGAKKLISCYR  229 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHH--TTCSEEEEECS
T ss_pred             CEEEEEcCCCCHHHHHHHHHH--hCCeEEEEEEC
Confidence            579999999999999999999  68899999853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=84.96  E-value=0.7  Score=45.87  Aligned_cols=33  Identities=21%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||+|.+|+.+|..|..  .|.+|+++|+.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~  216 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKR--LGAKTTGYDVR  216 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHH--HTCEEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            4689999999999999999988  58899999954

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=84.53  E-value=0.79  Score=47.87  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-+|..|++  .|.+|+++++.
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~  183 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHH--LGIKTTLLELA  183 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCcEEEEEcC
Confidence            489999999999999999998  68999999964

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=84.45  E-value=1  Score=40.83  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=28.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|.|||+|..|...|..|++  .|++|.+++++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~--~g~~V~~~~r~   60 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVG--SGFKVVVGSRN   60 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            34689999999999999999998  68899999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=84.43  E-value=0.88  Score=46.78  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +++|.|||.|..|+..|..|++.+.|++|+++|++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            46899999999999999999984337899999954

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=84.38  E-value=1  Score=41.66  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=30.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|.|||+|..|...|..|++  .|++|+++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~--~G~~V~~~~r~   51 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALAD--LGHEVTIGTRD   51 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            45789999999999999999998  68999999965

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=84.33  E-value=0.87  Score=44.91  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=28.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|+|+|+|.+|..++..|+.  .|.+|+++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~--~Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVG--LGAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            689999999999999999988  67889888854

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=84.07  E-value=0.73  Score=46.71  Aligned_cols=31  Identities=16%  Similarity=0.129  Sum_probs=28.6

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +|.|||+|..|+..|..|++  .|++|+++|++
T Consensus         2 kI~VIG~G~vG~~~A~~la~--~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence            69999999999999999999  78999999964

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=84.05  E-value=0.83  Score=45.29  Aligned_cols=34  Identities=32%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ....|+|+|+|.+|..+|..|..  .|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~--~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLD--LGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--HTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECC
Confidence            46799999999999999999988  466 79999965

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=83.89  E-value=0.81  Score=44.02  Aligned_cols=33  Identities=21%  Similarity=0.471  Sum_probs=28.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      ..+|.|||+|..|...|+.++.  .++  +|+|+|.+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~--~g~~~ev~L~Di~   48 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISA--KGIADRLVLLDLS   48 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEcCC
Confidence            4689999999999999999988  566  89999954

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=83.68  E-value=0.68  Score=46.28  Aligned_cols=31  Identities=19%  Similarity=0.189  Sum_probs=27.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      ++|.|||+|..|...|..|++. .|.+|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~-~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASR-DGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTS-TTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhC-CCCEEEEEe
Confidence            5899999999999999999872 388999999

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=83.67  E-value=1.5  Score=44.38  Aligned_cols=112  Identities=18%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      +||+|||||++|++||..|++.+++.+|+|||+.. ++       ..+|.+..            +...  ..     . 
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g-------~~~~~~~~------------~~~~--~~-----~-   55 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG-------YLSGGLSA------------YFNH--TI-----N-   55 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS-------SCCC-------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc-------ccCccchh------------hhcC--CC-----C-
Confidence            69999999999999999999954589999999764 33       01110000            0000  00     0 


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                       ...+                  ..+           .+.+.+.+.|++++++++|+++..++  +.+.+...    +.+
T Consensus        56 -~~~~------------------~~~-----------~~~~~~~~~gi~~~~~~~V~~id~~~--~~v~v~~~----~~~   99 (452)
T 3oc4_A           56 -ELHE------------------ARY-----------ITEEELRRQKIQLLLNREVVAMDVEN--QLIAWTRK----EEQ   99 (452)
T ss_dssp             ------------------------CC-----------CCHHHHHHTTEEEECSCEEEEEETTT--TEEEEEET----TEE
T ss_pred             -CHHH------------------hhc-----------CCHHHHHHCCCEEEECCEEEEEECCC--CEEEEEec----Cce
Confidence             0000                  000           01123456799999999999998764  66665421    125


Q ss_pred             EEEEcCeEEEccCCCh
Q 011610          210 ECIEADYLLIASGSSQ  225 (481)
Q Consensus       210 ~~i~ad~VIlAtG~~g  225 (481)
                      ..+.+|++|+|||+.+
T Consensus       100 ~~~~~d~lviAtG~~p  115 (452)
T 3oc4_A          100 QWYSYDKLILATGASQ  115 (452)
T ss_dssp             EEEECSEEEECCCCCB
T ss_pred             EEEEcCEEEECCCccc
Confidence            7899999999999854

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=83.67  E-value=0.92  Score=45.47  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=29.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||+|.+|+.+|..|..  .|.+|+++|+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~v~D~~  204 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANS--LGAIVRAFDTR  204 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            4689999999999999999887  68899999954

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=83.59  E-value=1.1  Score=43.38  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=29.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|.|||+|..|.+.|..|+.  .++ +|+++|.+
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~--~~~~~v~L~Di~   40 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGL--KELGDVVLFDIA   40 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCC
Confidence            4689999999999999999998  566 99999954

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=83.50  E-value=0.81  Score=44.30  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=28.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      ++|.|||+|..|...|..|++  .|+  +|+++|++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~--~g~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLM--KGFAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEeCC
Confidence            369999999999999999998  577  89999965

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=83.45  E-value=0.99  Score=45.13  Aligned_cols=33  Identities=30%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|+|||+|..|+-+|..+++  .|.+|+++|+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtvv~~~  184 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTK--FGVNVTLLEAL  184 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecC
Confidence            4689999999999999999999  78999999954

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=83.44  E-value=0.81  Score=44.09  Aligned_cols=34  Identities=15%  Similarity=0.083  Sum_probs=29.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      .+..|.|||.|..|...|..|++  .|+ +|+++++.
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~--~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQ--AGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH--HSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHH--CCCCeEEEEcCC
Confidence            35789999999999999999998  688 99999974

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=83.37  E-value=0.76  Score=47.18  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||||..|+-.|..+++  .|.+|+++|+.
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~  230 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWAR--LGAKVTVVEFL  230 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--HTCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCEEEEEecc
Confidence            579999999999999999998  68999999954

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=83.32  E-value=0.99  Score=45.00  Aligned_cols=32  Identities=31%  Similarity=0.429  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|+|||+|..|+-+|..+++  .|.+|+++|+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtvv~~~  174 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARA--KGLEVDVVELA  174 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            579999999999999999998  68999999954

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=83.27  E-value=1.1  Score=45.44  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      -...+.|||.|..|+..|..|++  .|++|+++|++
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~--~G~~V~~~D~~   40 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSD--FGHEVVCVDKD   40 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CceEEEEEcCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            35789999999999999999999  79999999965

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=83.22  E-value=0.81  Score=44.18  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=27.8

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      .|.|||+|..|...|..|++  .|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~--~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVD--NGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHH--HCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHh--CCCeEEEEEc
Confidence            69999999999999999998  6889999997

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=83.22  E-value=0.98  Score=43.64  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|.|||.|..|...|..|++  .|++|++++++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~   63 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCE--AGYALQVWNRT   63 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHh--CCCeEEEEcCC
Confidence            45689999999999999999998  78999999965

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=83.17  E-value=1.1  Score=42.35  Aligned_cols=32  Identities=19%  Similarity=0.155  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.|.|||.|..|...|..|++  .|++|++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~   33 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVK--AGCSVTIWNRS   33 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CEEEEEeecHHHHHHHHHHHH--CCCeEEEEcCC
Confidence            479999999999999999998  78999999965

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=83.14  E-value=1  Score=43.43  Aligned_cols=34  Identities=12%  Similarity=-0.029  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~   84 (481)
                      +...|.|||.|..|...|..|++  .| ++|+++++.
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~--~G~~~V~~~dr~   57 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGG--RNAARLAAYDLR   57 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT--TTCSEEEEECGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence            34689999999999999999999  78 999999965

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=83.06  E-value=0.88  Score=43.74  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=28.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCC--CcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPK--LNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g--~~V~llE~~   84 (481)
                      ++|+|||+|..|...|..|++  .|  .+|+++|++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~--~g~~~~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIA--QGVADDYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEcCC
Confidence            479999999999999999998  46  689999965

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=82.99  E-value=1  Score=43.60  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      ..+|+|||+|..|...|+.++.  .+.  +|+++|.+
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~--~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMAL--RQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--TTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence            4689999999999999999998  455  89999944

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=82.89  E-value=1.2  Score=46.09  Aligned_cols=36  Identities=11%  Similarity=0.079  Sum_probs=31.2

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+...|.|||.|..|...|..|++  .|++|+++++.
T Consensus         7 ~~~~~~IgvIGlG~MG~~lA~~La~--~G~~V~v~dr~   42 (497)
T 2p4q_A            7 HHMSADFGLIGLAVMGQNLILNAAD--HGFTVCAYNRT   42 (497)
T ss_dssp             --CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             ccCCCCEEEEeeHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            3466799999999999999999999  78999999965

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=82.82  E-value=1.5  Score=42.10  Aligned_cols=33  Identities=12%  Similarity=0.052  Sum_probs=29.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..|++  .|.+|++++++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~--~g~~V~~~~~~   62 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLK--MGHTVTVWNRT   62 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CCeEEEEcccHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            3689999999999999999998  68899999965

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=82.66  E-value=1.1  Score=44.66  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|||+|.+|+.+|..|..  .|.+|+++|+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~~~d~~  204 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKR--LGAVVMATDVR  204 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            4689999999999999999887  68889999854

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=82.64  E-value=0.89  Score=47.52  Aligned_cols=34  Identities=12%  Similarity=0.039  Sum_probs=30.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP   86 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~   86 (481)
                      .+++|||||..|+-.|..+++  -|.+|+|++++..
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~--lG~~VTii~~~~~  257 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNS--LGYDVTVAVRSIV  257 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--HTCCEEEEESSCS
T ss_pred             ceEEEECCCHHHHHHHHHHHh--cCCeEEEeccccc
Confidence            579999999999999999999  6899999987543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=82.47  E-value=0.83  Score=41.51  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=28.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEE-EeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVI-IEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~l-lE~~   84 (481)
                      +++|.|||+|..|...|..|++  .|++|++ ++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~--~g~~V~~v~~r~   56 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTA--AQIPAIIANSRG   56 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHH--TTCCEEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCC
Confidence            4689999999999999999998  6888888 6654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=82.32  E-value=1.4  Score=39.36  Aligned_cols=31  Identities=23%  Similarity=0.258  Sum_probs=27.9

Q ss_pred             eEEEEC-CchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVG-GGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIG-gG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +|+||| +|..|...|..|++  .|++|.+++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~--~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLAT--LGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            689999 99999999999998  68899999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=82.28  E-value=1.5  Score=41.38  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             CCeEEEECC-chHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGg-G~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +..|.|||+ |..|...|..|++  .|++|+++++.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~--~g~~V~~~~r~   44 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHD--SAHHLAAIEIA   44 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH--SSSEEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            468999999 9999999999998  68899999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=82.21  E-value=1.3  Score=45.62  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=29.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..+++  .|++|+++|++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~--aG~~V~l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAAS--HGHQVLLYDIS   37 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--TTCCEEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHH--CCCeEEEEECC
Confidence            3579999999999999999998  79999999965

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=82.19  E-value=1  Score=42.74  Aligned_cols=33  Identities=12%  Similarity=0.119  Sum_probs=29.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +++|.|||+|..|...|..|++  .|++|.+++++
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~   37 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRN   37 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             cceEEEECchHHHHHHHHHHHh--CCCEEEEEeCC
Confidence            3589999999999999999998  68899999965

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=82.01  E-value=1.7  Score=41.68  Aligned_cols=34  Identities=26%  Similarity=0.149  Sum_probs=30.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|.|||.|..|...|..|++  .|++|++++++
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~--~G~~V~~~dr~   41 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLK--QGKRVAIWNRS   41 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence            34689999999999999999998  78999999965

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=81.98  E-value=1  Score=43.11  Aligned_cols=32  Identities=19%  Similarity=0.229  Sum_probs=27.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      ++|.|||+|..|.+.|+.|++  .+.  +|+++|.+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~--~~~~~~v~L~D~~   34 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLL--NLDVDEIALVDIA   34 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HSCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEECC
Confidence            379999999999999999998  455  89999954

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=81.93  E-value=1.3  Score=42.83  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|.|||+|..|...|+.+++  .|+ +|+++|.+
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~--~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQ--KELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence            3589999999999999999998  677 99999965

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=81.84  E-value=1.9  Score=41.09  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=29.9

Q ss_pred             CCCeEEEEC-CchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVG-GGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIG-gG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +...|.||| +|..|.+.|..|++  .|++|.+++++
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~--~G~~V~~~~~~   54 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRA--SGYPISILDRE   54 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTT
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            345899999 99999999999998  68999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=81.78  E-value=1.4  Score=44.64  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..++|.|||.|..|+..|..|++   |++|+++|++
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~---G~~V~~~D~~   67 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ---NHEVVALDIV   67 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT---TSEEEEECSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc---CCeEEEEecC
Confidence            44689999999999999999986   7899999965

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=81.55  E-value=1.4  Score=43.63  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=29.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|+|+|..|..+|..|+.  .|.+|+++|+.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~--~Ga~V~~~d~~  198 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALG--MGAQVTILDVN  198 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence            3689999999999999999988  68899999854

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=81.31  E-value=1.6  Score=42.33  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|.|||+|..|.+.|..++.  .++ +|.++|.+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~--~~~~~v~l~Di~   38 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALI--KQLGDVVLFDIA   38 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCC
Confidence            3689999999999999999998  566 89999954

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=81.24  E-value=1.7  Score=41.84  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=30.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      +...|.|||.|..|.+.|..|++  .|+  +|+++|++
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~--~G~~~~V~~~dr~   67 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDIN   67 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh--CCCCCEEEEEECC
Confidence            34689999999999999999998  677  89999965

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=81.20  E-value=0.97  Score=42.81  Aligned_cols=32  Identities=16%  Similarity=0.128  Sum_probs=29.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|.|||.|..|...|..|++  .|++|++++++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~--~G~~V~~~dr~   33 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVR--AGFDVTVWNRN   33 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHH--HTCCEEEECSS
T ss_pred             CeEEEEccCHHHHHHHHHHHH--CCCeEEEEcCC
Confidence            479999999999999999998  68999999965

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=81.16  E-value=1  Score=46.06  Aligned_cols=35  Identities=14%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +++|.|||.|..|+..|..|++.++|++|+++|++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            36899999999999999999984337999999964

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=81.15  E-value=1.4  Score=45.03  Aligned_cols=33  Identities=21%  Similarity=0.152  Sum_probs=29.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      .+++|||||..|+-.|..+++  .|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKG--LGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHH--cCCEEEEEeCCC
Confidence            579999999999999999999  689999999643

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=81.05  E-value=1.6  Score=41.09  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=27.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ...++|+|+|.+|..+|..|++  .|.+|+++++
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~--~G~~V~v~~R  150 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLS--LDCAVTITNR  150 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--cCCEEEEEEC
Confidence            4589999999999999999998  5778877764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=80.85  E-value=1.5  Score=41.09  Aligned_cols=31  Identities=19%  Similarity=0.114  Sum_probs=28.0

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .|.|||+|..|...|..|++  .|++|.+++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            68999999999999999998  68899999865

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=80.81  E-value=1.6  Score=42.35  Aligned_cols=34  Identities=29%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      ...+|.|||+|..|...|+.++.  .++  +|+++|.+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~--~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLM--KDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHH--HCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEECC
Confidence            34689999999999999999998  465  89999953

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=80.65  E-value=1.4  Score=42.72  Aligned_cols=33  Identities=18%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~   84 (481)
                      ..+|.|||+|..|.+.|+.|+.  .+.  +|+++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~--~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALIN--QGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCceEEEEecc
Confidence            4689999999999999999998  455  89999954

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=80.53  E-value=1.9  Score=41.55  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=28.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|+|||+|..|.+.|+.++..+...+|+++|.+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            346899999999999999999873222379999954

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=80.39  E-value=1.8  Score=46.81  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|.|||+|..|...|..+++  .|++|+++|++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~--aG~~V~l~D~~  344 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALIL--SNYPVILKEVN  344 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHT--TTCCEEEECSS
T ss_pred             CcEEEEEcCCHhhHHHHHHHHh--CCCEEEEEECC
Confidence            4579999999999999999999  79999999965

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=80.36  E-value=1.8  Score=39.91  Aligned_cols=33  Identities=9%  Similarity=0.175  Sum_probs=28.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC----cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL----NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~----~V~llE~~   84 (481)
                      +..|.|||+|..|...|..|++  .|+    +|.+++++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~--~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMIN--KNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--TTSSCGGGEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHh--CCCCCCCeEEEEeCC
Confidence            3579999999999999999998  676    88888754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=80.30  E-value=1.5  Score=40.85  Aligned_cols=35  Identities=14%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP   86 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~   86 (481)
                      ...|+|||+|..|..+|..|++  .|. +++|+|.+.+
T Consensus        28 ~~~VlvvG~GglG~~va~~La~--~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAG--AGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH--TTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHH--cCCCeEEEEeCCCc
Confidence            4699999999999999999999  565 7889997654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=80.24  E-value=1.4  Score=45.64  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+++|||||..|+-.|..+++  .|.+|+++|+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~  246 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRT  246 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEec
Confidence            689999999999999999998  78999999964

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=80.18  E-value=0.99  Score=44.62  Aligned_cols=32  Identities=13%  Similarity=0.019  Sum_probs=28.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCC-------CcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPK-------LNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g-------~~V~llE~~   84 (481)
                      ..|.|||+|..|...|..|++  .|       .+|+++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~--~G~~~~~~~~~V~~~~r~   60 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGT--NAKNNYLFENEVRMWIRD   60 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHH--HHHHCTTBCSCEEEECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHH--cCCccCCCCCeEEEEECC
Confidence            479999999999999999998  57       899999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	481
d2i0za2	169	e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus	1e-30
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	7e-22
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-16
d2gqfa2	148	e.74.1.1 (A:195-342) Hypothetical protein HI0933 {	2e-20
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-18
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-13
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	4e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	7e-06
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	9e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-05
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	3e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	7e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	7e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	8e-05
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	9e-05
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	1e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-04
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	1e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	3e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	3e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	4e-04
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	4e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	4e-04
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	5e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	5e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	5e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	7e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	0.002
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.002
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	0.003
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.003
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.004

>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 169

class: Multi-domain proteins (alpha and beta)
fold: HI0933 insert domain-like
superfamily: HI0933 insert domain-like
family: HI0933 insert domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score =  114 bits (287), Expect = 1e-30
 Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 8/174 (4%)

Query: 243 PSLFTFKIADSQLT--ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVI 300
           P+       +  +    L G++   +   +           ++    ML TH+GLSGP  
Sbjct: 1   PTEVPILSNEPFIRDRSLQGLALRDINLSVLNPK---GKAIISHKMDMLFTHFGLSGPAA 57

Query: 301 LRLSAWGARYLFSSCYKG-MLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCL 359
           LR S +  + L         +++D +P+ + E +   + +      K+ + N       +
Sbjct: 58  LRCSQFVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLK--GYV 115

Query: 360 VKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVT 413
            +R++ ++L +  + G      VS+  + ++ +  K  T+ V G    +  FVT
Sbjct: 116 PERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVT 169

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 92.6 bits (229), Expect = 7e-22
 Identities = 30/63 (47%), Positives = 34/63 (53%)

Query: 407 FKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTS 466
                VT GGV    IS  TMES     L+F GEVL+V G  GG+NFQ AWS  Y    S
Sbjct: 190 IPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALS 249

Query: 467 IGK 469
           I +
Sbjct: 250 ISR 252

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 75.7 bits (185), Expect = 4e-16
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 27/226 (11%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMIL 111
            +++G GAAG++ A +        +V + + GK    K+ +SGGG CN TN        L
Sbjct: 7   NIIIGAGAAGLFCAAQLA--KLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYL 64

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTE 171
               P   K     +       D +S  ++ G+    ++ G++F    +   V + L +E
Sbjct: 65  -SQNPHFVKSALARYT----NWDFISLVAEQGITYHEKELGQLFCDEGAEQIV-EMLKSE 118

Query: 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG--------S 223
               G  +     V+         K    ++  +       +   L++A+G        +
Sbjct: 119 CDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS----TQWQCKNLIVATGGLSMPGLGA 174

Query: 224 SQQGHRLAAQLGHSIVDPVPSLFTFKIADS------QLTELSGVSF 263
           +  G+++A Q G  ++ P                  +  ++SG+ F
Sbjct: 175 TPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYF 220

>d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 148

class: Multi-domain proteins (alpha and beta)
fold: HI0933 insert domain-like
superfamily: HI0933 insert domain-like
family: HI0933 insert domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 24/162 (14%)

Query: 242 VPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVIL 301
           VP  FT++  D  LT LSG+S P  +  L  ++             +L TH G+SGP +L
Sbjct: 3   VP--FTYRETDKFLTALSGISLPVTITALCGKSFY---------NQLLFTHRGISGPAVL 51

Query: 302 RLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVK 361
           ++S +             + +D +P+ ++E+    ++Q K    KQ +         L K
Sbjct: 52  QISNYWQ-------PTESVEIDLLPNHNVEEE---INQAKQSSPKQMLKTILV--RLLPK 99

Query: 362 RFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAG 403
           +  +  +  +G+  D + A++S   + ++   + H      G
Sbjct: 100 KLVELWI-EQGIVQDEVIANISKVRVKNLVDFIHHWEFTPNG 140

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 82.4 bits (202), Expect = 2e-18
 Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 34/260 (13%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMIL 111
           ++V+GGG +G+  AI A       NV++++KG  L  K+ ISGGGRCNVTN    D+++ 
Sbjct: 5   VIVIGGGPSGLMAAIGAA--EEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV- 61

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTE 171
              +  G+  F  S FS+    D +++F + GV+LK ED GR+FPVS+ + SV+D LLT 
Sbjct: 62  --KHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTR 119

Query: 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEAD--YLLIASGSSQQGHR 229
            K  GV ++T   V T   +N   K ++      +     + A     +  +GS+  G+ 
Sbjct: 120 LKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYA 179

Query: 230 LAAQLGHSIVDPVPSLFTFKIADSQLTE---LSGVSFPKVVAKLKLENVQRSSPYLTQVG 286
            A + GH+I +      + K  + +       +G+ F                      G
Sbjct: 180 WAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYF---------------------CG 218

Query: 287 PMLVTHWGLSGPVILRLSAW 306
            +L  H    G  I   SA 
Sbjct: 219 EVLDIHGYTGGYNI--TSAL 236

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 67.4 bits (163), Expect = 3e-13
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 415 GGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK 469
           GGV + EI+   M SK    L+F GEVL++ G TGG+N  +A   G IAGT+ G+
Sbjct: 194 GGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGE 248

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNG--HCADKM 109
           ++++G GAAG+  A+R    A +  V+++ KG         + GG   V +        +
Sbjct: 10  VLIIGSGAAGLSLALRL---ADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHV 66

Query: 110 ILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG 152
                   G  +     F        + W  D GV   T    
Sbjct: 67  EDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQP 109

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 14/105 (13%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMIL 111
           +VVVG G AG   AI A        V++IEK   +    K++ GG           K I 
Sbjct: 19  VVVVGSGGAGFSAAISAT--DSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKI- 75

Query: 112 AGHYPRGHKEFRGSFFSLHGPM----------DTMSWFSDHGVEL 146
                   ++      +++ P           D++ W +  G +L
Sbjct: 76  TDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADL 120

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL--SKVKISGGGRCNVTNGHCADKMI 110
           L +VG G AG+  AI A    P   + +I K  P+    V   GG      +    +   
Sbjct: 8   LAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHF 67

Query: 111 LAGHYPRGHKEFR--GSFFSLHGPMDTMSWFSDHGVELKTE 149
                       +    +F  H P +            +  
Sbjct: 68  HDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRP 108

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
           +VV+GGG  G   A  A      L V I+E+ K L       GG C   N  C     L 
Sbjct: 9   VVVLGGGPGGYSAAFAAADE--GLKVAIVERYKTL-------GGVC--LNVGCIPSKALL 57

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSW 138
            +     +    +   +  P   +  
Sbjct: 58  HNAAVIDEVRHLAANGIKYPEPELDI 83

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHC-ADKMIL 111
           L+V+GGG+ G+  A RA        V ++EK +         GG C   N  C   K++ 
Sbjct: 4   LIVIGGGSGGMAAARRAARH--NAKVALVEKSRL--------GGTC--VNVGCVPKKIMF 51

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSWFSDH 142
                    E    +         +    + 
Sbjct: 52  NAASVHDILENSRHYGFDTKFSFNLPLLVER 82

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPK--LNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKM 109
           ++++GGG +G   A  A   A    L V ++EK     S     G    N          
Sbjct: 24  ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSE 83

Query: 110 ILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSD 159
               +    +  +           D ++ ++ H        +    P+  
Sbjct: 84  R--QNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWK 131

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 24/101 (23%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
            +VVG G  G   AIRA  +     V I+EKG          GG C       +  +I A
Sbjct: 6   TLVVGAGPGGYVAAIRAAQL--GQKVTIVEKGNL--------GGVCLNVGCIPSKALISA 55

Query: 113 GHYPRGHKEFRGSFFSLHGPM-DTMSWFSDHGVELKTEDDG 152
            H     K              D           +K    G
Sbjct: 56  SHRYEQAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGG 96

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGH---CADKM 109
           +V++GGG AG   AI+A  +    N   +EK   L       GG C              
Sbjct: 8   VVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGKL-------GGTCLNVGCIPSKALLNN 58

Query: 110 ILAGHYPRGHKEFRGSFFSLHGPMDTMSWF 139
               H      + RG   +    ++  ++ 
Sbjct: 59  SHLFHQMHTEAQKRGIDVNGDIKINVANFQ 88

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 10/83 (12%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMIL 111
           +V++GGG AG   A+ A T  P+   V +I+            GG   V +     K  +
Sbjct: 4   IVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI--------GGAA-VLDDCVPSKTFI 54

Query: 112 AGHYPRGHKEFRGSFFSLHGPMD 134
           A    R                D
Sbjct: 55  ASTGLRTELRRAPHLGFHIDFDD 77

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 15/197 (7%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL--SKVKISGGGRCNVTNG-------H 104
           VV+G G AG+  A++           ++ K  P     V   GG    + N        H
Sbjct: 11  VVIGAGGAGMRAALQIS--QSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWH 68

Query: 105 CADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSV 164
             D +  + +      +    +    GP + +      G+     DDGR++       S 
Sbjct: 69  MYDTVKGSDYIGD---QDAIEYMCKTGP-EAILELEHMGLPFSRLDDGRIYQRPFGGQSK 124

Query: 165 IDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 224
                  A+      +TG  +         +       +     +   +   ++  +   
Sbjct: 125 NFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALC 184

Query: 225 QQGHRLAAQLGHSIVDP 241
            +   +      + V  
Sbjct: 185 IETGEVVYFKARATVLA 201

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 15/171 (8%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
           LVV+G G+ G+     A ++  K  V +I+  K       +  G     N  C  K ++ 
Sbjct: 6   LVVIGAGSGGLEAGWNAASLHKK-RVAVIDLQKHHGPPHYAALGGTC-VNVGCVPKKLMV 63

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEA 172
                       + F      +++       +  K   +  V  ++DS   +        
Sbjct: 64  TGANYMDTIRESAGFGWELDRESVRPNWKALIAAK---NKAVSGINDSYEGMFA------ 114

Query: 173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223
              G+    G      +  +     + +       ++E ++ +Y+L+A+GS
Sbjct: 115 DTEGLTFHQG----FGALQDNHTVLVRESADPNSAVLETLDTEYILLATGS 161

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 2/89 (2%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAG 113
           +VVG G+AG   ++ AK      NV++++K        +   G  N           +  
Sbjct: 23  LVVGAGSAGFNASLAAK--KAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVED 80

Query: 114 HYPRGHKEFRGSFFSLHGPMDTMSWFSDH 142
                 ++        +            
Sbjct: 81  KVEWFIEDAMKGGRQQNDIKLVTILAEQS 109

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
           +V++GGG  G   AI+A  +        IEK   L      GG   NV        +  +
Sbjct: 6   VVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGAL------GGTCLNVGCIPSKALLHSS 57

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSWFSDH 142
             Y      F      +      ++     
Sbjct: 58  HMYHEAKHSFANHGVKVSNVEIDLAAMMGQ 87

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 17/177 (9%), Positives = 42/177 (23%), Gaps = 8/177 (4%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAG 113
            ++G G +G+  A           V + E+          G      T  +         
Sbjct: 8   AIIGAGPSGLVTAKALLAEKAFDQVTLFERRG-----SPGGVWNYTSTLSNKLPVPSTNP 62

Query: 114 HYPRGHKEFRGSFFSLHGPM--DTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTE 171
                      +      P+  D  +      +    +             ++ +     
Sbjct: 63  ILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIY 122

Query: 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGH 228
           A+     ++    V      +       K  K   + +     D + I +G  +  +
Sbjct: 123 AQPLLPFIKLATDVLDIEKKDGSWVVTYKGTK-AGSPISKDIFDAVSICNGHYEVPY 178

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 12/86 (13%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
            +V+GGG+ G+  A RA  +       ++E  K         GG C   N  C  K ++ 
Sbjct: 6   YLVIGGGSGGLASARRAAEL--GARAAVVESHKL--------GGTC--VNVGCVPKKVMW 53

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSW 138
                       + +         +W
Sbjct: 54  NTAVHSEFMHDHADYGFPSCEGKFNW 79

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
           L+++GGG+ G+  A  A        V++++   P       G G     N  C  K ++ 
Sbjct: 6   LIIIGGGSGGLAAAKEAAKF--DKKVMVLDFVTPTPLGTNWGLGGT-CVNVGCIPKKLMH 62

Query: 113 GHY 115
              
Sbjct: 63  QAA 65

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 13/93 (13%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
           L+++GGG  G   AIRA  +   +  V++E            GG C       +  +I  
Sbjct: 8   LLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQAL--------GGTCLNIGCIPSKALIHV 57

Query: 113 GH---YPRGHKEFRGSFFSLHGPMDTMSWFSDH 142
                      E      S+  P   +      
Sbjct: 58  AEQFHQASRFTEPSPLGISVASPRLDIGQSVAW 90

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 13/88 (14%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK--MI 110
            + +GGGAAG +G+   + +      +I+++   L       GG C   +  C       
Sbjct: 45  AIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFL-------GGSC--PHNACVPHHLFS 93

Query: 111 LAGHYPRGHKEFRGSFFSLHGPMDTMSW 138
                    + F G ++        +  
Sbjct: 94  DCAAELMLARTFSGQYWFPDMTEKVVGI 121

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 14/98 (14%), Positives = 32/98 (32%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
            +++GGG A    A   +   P   V+I+ +   L  ++         ++     K +  
Sbjct: 7   FLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRF 66

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTED 150
             +    +       S +     +    + GV + T  
Sbjct: 67  KQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGK 104

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
           LVV+G G+ G+  A  A T+  K  V +I+          S  G   V  G    K+++ 
Sbjct: 6   LVVIGAGSGGLEAAWNAATLYKK-RVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVT 64

Query: 113 GHYPRGHKEFRGSFFSLHGPMDTMSWFSDH 142
           G     H      F          + + + 
Sbjct: 65  GAQYMEHLRESAGFGWEFDRTTLRAEWKNL 94

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL--SKVKISGGGRCNVTNGHCADKMI 110
            +V+GGG AG+  A+  +     L+ +++              GG + ++ N   +D   
Sbjct: 8   SLVIGGGLAGLRAAVATQ--QKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDN 65

Query: 111 LAGHY------PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSV 164
              H+           + + +   ++     +   +  GV       G    + ++  + 
Sbjct: 66  EDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTT 125

Query: 165 I 165
           I
Sbjct: 126 I 126

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 33/307 (10%), Positives = 69/307 (22%), Gaps = 21/307 (6%)

Query: 39  TAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRC 98
            A   L  TS+ + +V+VG G AG+  A           V ++E  +         GGR 
Sbjct: 19  IARNGLKATSNPKHVVIVGAGMAGLSAAYVLA--GAGHQVTVLEASERP-------GGRV 69

Query: 99  N-VTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV 157
               N        L              +              +       ++  +    
Sbjct: 70  RTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGE 129

Query: 158 SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYL 217
                 ++   +  ++      Q  +       +   R     +  +          +YL
Sbjct: 130 VKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTK---EYL 186

Query: 218 LIASGSSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQR 277
           +     S     +   L +       S       D                      + R
Sbjct: 187 IKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYR 246

Query: 278 SSPYLTQVGPMLVTHWGLSGPVILRLSAWG-------ARYLFSSCYKGML-TVDFVPDLH 329
                      ++        V +             A Y+        +  + F P L 
Sbjct: 247 DIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLL 306

Query: 330 IEDMQSI 336
            +   ++
Sbjct: 307 PKKAHAL 313

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 38/243 (15%), Positives = 69/243 (28%), Gaps = 42/243 (17%)

Query: 35  RKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISG 94
           R+ T   +    T +E  +VVVG G+AG+  A       P + V IIE+           
Sbjct: 18  REMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVSP------- 69

Query: 95  GGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV 154
           GG      G           +                      +  + GV    +D    
Sbjct: 70  GGGA--WLGGQ--------LFSAMIVR-----------KPAHLFLDEIGVAYDEQDTY-- 106

Query: 155 FPVSDSSSSVIDCLLTEAKHRGVVLQTG---KVVTTASSDNAGRKFLLKVEKRTMNLVEC 211
             V  ++      +        V L      + +    +   G      +  +  +   C
Sbjct: 107 VVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSC 166

Query: 212 -----IEADYLLIASGSS-QQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPK 265
                +EA  ++ + G     G     +L    +  +  +   K  D    E + V   +
Sbjct: 167 MDPNVMEAKIVVSSCGHDGPFGATGVKRLKS--IGMIDHVPGMKALDMNTAEDAIVRLTR 224

Query: 266 VVA 268
            V 
Sbjct: 225 EVV 227

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 13/87 (14%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD-KMIL 111
            + +GGG+ G+    RA          +IE  +         GG C   N  C   K++ 
Sbjct: 5   YIAIGGGSGGIASINRAAMY--GQKCALIEAKEL--------GGTC--VNVGCVPKKVMW 52

Query: 112 AGHYPRGHKEFRGSFFSLHGPMDTMSW 138
                R      G  +     ++  +W
Sbjct: 53  HAAQIREAIHMYGPDYGFDTTINKFNW 79

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMI 110
           +V++G G AG+  A+ A+       V+++EK        K++ GG         A   I
Sbjct: 26  VVIIGSGGAGLAAAVSAR--DAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 82

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 53  LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILA 112
           ++V+G G  G   AI++  +   L   +IEK K        G      T  +       A
Sbjct: 6   VIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKG-----KEGKTALGGTCLNVGCIPSKA 58

Query: 113 GHYPRGHKEFRGSFFSLHG 131
                         F LHG
Sbjct: 59  LLDSSYKFHEAHESFKLHG 77

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 5/95 (5%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPK----LNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADK 108
           V+VG G AG+  A R K +A +    L V ++EK     +                  D 
Sbjct: 36  VIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDW 95

Query: 109 MILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHG 143
                       E R    +    +          
Sbjct: 96  KEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPM 130

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP 86
          +VVVGGG  G   A   K   P + V +IE    
Sbjct: 5  VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 50/422 (11%), Positives = 104/422 (24%), Gaps = 69/422 (16%)

Query: 54  VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVT--NGHCADK--M 109
            V+G G +G+  A + K     LNV + E            GG+      +G   D+   
Sbjct: 5   AVIGAGVSGLAAAYKLK--IHGLNVTVFEAEGKA-------GGKLRSVSQDGLIWDEGAN 55

Query: 110 ILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLL 169
            +                                  L   +  +     +      +   
Sbjct: 56  TMTESEGDVTFLID---------------------SLGLREKQQFPLSQNKRYIARNGTP 94

Query: 170 TEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHR 229
                  + L     ++T S      + +L   K+   + +  E                
Sbjct: 95  VLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHE-----------SVSGF 143

Query: 230 LAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPML 289
                G  +VD +   F           LS       +                    +L
Sbjct: 144 FQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWN----------LEKRFGSVIL 193

Query: 290 VTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRF-AKQK 348
                   P   +              +G  +         + +   L + ++R  ++  
Sbjct: 194 GAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVL 253

Query: 349 VLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISI-ARLLKHCTLEVAGKGQF 407
            L+    E   +  +            +       +  +++     +K   +   G    
Sbjct: 254 ELSCSCTEDSAIDSWSIISASPHKRQSEEESF---DAVIMTAPLCDVKSMKIAKRGNPFL 310

Query: 408 KDEFVTAGGVPLSEI--SLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGT 465
            +      G     +  +++ ME  + P LF+AG         GG +   A S G  A  
Sbjct: 311 LNFIPEVYGHNYDSVLDAIDKMEKNL-PGLFYAGNHR------GGLSVGKALSSGCNAAD 363

Query: 466 SI 467
            +
Sbjct: 364 LV 365

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 15/64 (23%), Positives = 23/64 (35%)

Query: 34 KRKFTTAAIPLTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKIS 93
           R  T+         +   +++VG G++G+  A       P L V IIE           
Sbjct: 34 SRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93

Query: 94 GGGR 97
          GG  
Sbjct: 94 GGQL 97

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS 88
          ++V+G    G         + P   +   EKG  +S
Sbjct: 3  VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	481
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	100.0
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	100.0
d2i0za2	169	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.96
d2gqfa2	148	Hypothetical protein HI0933 {Haemophilus influenza	99.91
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.86
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.84
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.83
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.76
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.66
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.65
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.61
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.57
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.55
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.52
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.36
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.35
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.33
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.32
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.28
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.17
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.14
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.12
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.08
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.08
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.01
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.96
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.95
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.95
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.95
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.9
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.9
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.89
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.84
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.83
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.8
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.79
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.79
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.78
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.77
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.76
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.75
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.73
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.73
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.7
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.7
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.69
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.68
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.66
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.66
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.66
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.65
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.6
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.59
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.57
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.56
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.54
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.51
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.51
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.5
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.5
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.49
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.48
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.47
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.46
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.45
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.44
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.44
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.43
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.4
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.4
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.4
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.39
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.31
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.2
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.2
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.12
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.09
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.03
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.97
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.97
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.96
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.92
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.87
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.86
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.79
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.59
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.18
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.08
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.88
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.73
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.34
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.34
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.29
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.94
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.93
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.83
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.66
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.52
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.46
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.92
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.39
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.19
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.17
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.15
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.05
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.9
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.8
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.6
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.48
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.47
d2hkja1	78	Topoisomerase VI-B subunit middle domain {Archaeon	93.16
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.66
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.38
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.16
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.11
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.48
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	91.45
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.28
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	91.24
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.17
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.04
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.0
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.57
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.46
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.39
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.28
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.11
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	90.02
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	89.84
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	89.8
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.74
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.74
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.6
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	89.39
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	89.35
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	89.16
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.09
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	89.04
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	88.99
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	88.54
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.44
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.39
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.29
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.14
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.05
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	87.88
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	87.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	87.67
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	87.05
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	86.88
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	86.64
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	86.45
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	85.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.73
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	85.67
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	85.65
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	85.52
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	85.13
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	84.96
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.87
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.75
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.48
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.3
d1k3xa1	89	Endonuclease VIII {Escherichia coli [TaxId: 562]}	83.66
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	83.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	83.5
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	83.14
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.99
d1k82a1	88	DNA repair protein MutM (Fpg) {Escherichia coli [T	82.93
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.66
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	82.23
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	81.71
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.71
d1tdza1	88	DNA repair protein MutM (Fpg) {Lactococcus lactis	81.68
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	81.5
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	81.16
d1ee8a1	89	DNA repair protein MutM (Fpg) {Thermus thermophilu	81.04
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	81.02
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	80.94
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	80.03

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=2.9e-50  Score=386.05  Aligned_cols=239  Identities=31%  Similarity=0.505  Sum_probs=200.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      +.+||+|||||+||++||+.|++  .|++|+|||++ .+|++++++|+|+||++|....+     ..+....+.+....+
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~--~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~-----~~~~~~~~~~~~~~l   75 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTP-----AHYLSQNPHFVKSAL   75 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCG-----GGEECSCTTSTHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCceEecCCccccccCcccCc-----hhhhccChHHHHHHh
Confidence            56899999999999999999999  79999999965 78899999999999999875432     223333444556677


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCe--EEEEEeecc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK--FLLKVEKRT  205 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~--~~V~~~~~~  205 (481)
                      ..+...+..+|+..+++.+..+..+.+|| +..+.++.+.|.+++++.||+|+++++|++++..+++..  +.+.++   
T Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~---  151 (253)
T d2gqfa1          76 ARYTNWDFISLVAEQGITYHEKELGQLFC-DEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN---  151 (253)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECSTTEEEE-TTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET---
T ss_pred             hhhcccchhhhhhhcCcceeeecCCcccc-ccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecC---
Confidence            88899999999999999998888788887 678899999999999999999999999999987651222  334444   


Q ss_pred             cCceEEEEcCeEEEccCC--------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEEEecCccC
Q 011610          206 MNLVECIEADYLLIASGS--------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQR  277 (481)
Q Consensus       206 ~~~~~~i~ad~VIlAtG~--------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  277 (481)
                         +.+++||+||+|||+        ++++|.+|+++||++.++                                    
T Consensus       152 ---~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~------------------------------------  192 (253)
T d2gqfa1         152 ---STQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPP------------------------------------  192 (253)
T ss_dssp             ---TEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEE------------------------------------
T ss_pred             ---CEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccccccc------------------------------------
Confidence               578999999999994        456666666666654221                                    


Q ss_pred             CCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCcc
Q 011610          278 SSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEF  357 (481)
Q Consensus       278 ~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  357 (481)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (253)
T d2gqfa1         193 --------------------------------------------------------------------------------  192 (253)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEE
Q 011610          358 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFF  437 (481)
Q Consensus       358 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~  437 (481)
                                                                          .+||+|||+++||||+|||||.+|||||
T Consensus       193 ----------------------------------------------------~~~~~ggv~~~~i~~~t~es~~~~gl~~  220 (253)
T d2gqfa1         193 ----------------------------------------------------RAVTMGGVDTKVISSKTMESNQVSGLYF  220 (253)
T ss_dssp             ----------------------------------------------------EEEEEEEECGGGBCTTTCBBSSSTTEEE
T ss_pred             ----------------------------------------------------ccccCCCCcccccCccchhhhcCCCcEE
Confidence                                                                1289999999999999999999999999


Q ss_pred             EEEEeecccCcchHHHHHHHHHHHHHHHHHhH
Q 011610          438 AGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK  469 (481)
Q Consensus       438 ~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~  469 (481)
                      |||+|||||+||||||||||+|||+||+++++
T Consensus       221 ~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~  252 (253)
T d2gqfa1         221 IGEVLDVTGWLGGYNFQWAWSSAYACALSISR  252 (253)
T ss_dssp             CGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             eeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence            99999999999999999999999999999976

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=7.8e-34  Score=269.85  Aligned_cols=165  Identities=39%  Similarity=0.612  Sum_probs=135.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ++|||+|||||++|++||+.|++  .|++|+|||++ .+++++..+++++|+..+....+  .+...+.. ...+.....
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~--~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~   75 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLD--EIVKHIPG-NGRFLYSAF   75 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHH--HHHHTCTB-TGGGGHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcceeccCCcceecccccccc--hhhccccc-chhhhhhhh
Confidence            57999999999999999999999  79999999965 67777777788888887764322  33333333 333444555


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                      ..+.......|+...|++......++.||.......+.+.|.+.+++.||+|+++++|++|..++ +....|.+++    
T Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~----  150 (251)
T d2i0za1          76 SIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVILQT----  150 (251)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETT----
T ss_pred             hhhhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC-CEEEEEEeCC----
Confidence            67777888999999999999888899999999999999999999999999999999999999876 4445677775    


Q ss_pred             ceEEEEcCeEEEccCCC
Q 011610          208 LVECIEADYLLIASGSS  224 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG~~  224 (481)
                       ++.++||+||+|||+.
T Consensus       151 -g~~i~a~~vI~AtGg~  166 (251)
T d2i0za1         151 -GEVLETNHVVIAVGGK  166 (251)
T ss_dssp             -CCEEECSCEEECCCCS
T ss_pred             -CCeEecCeEEEccCCc
Confidence             6789999999999963

>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Multi-domain proteins (alpha and beta)
fold: HI0933 insert domain-like
superfamily: HI0933 insert domain-like
family: HI0933 insert domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.96  E-value=2.9e-30  Score=230.48  Aligned_cols=166  Identities=20%  Similarity=0.325  Sum_probs=149.7

Q ss_pred             CceeEeeeCcccc--ccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCc-eeE
Q 011610          243 PSLFTFKIADSQL--TELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCY-KGM  319 (481)
Q Consensus       243 p~l~~~~~~~~~~--~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~-~~~  319 (481)
                      |+++|+.+.++++  +.|+|++++++.+++....   ++...++.||++|||||+|||+||++|+++.+.+.+.++ .+.
T Consensus         1 PaLvpl~~~~~~i~~~~L~Gisl~~v~~~~~~~~---gk~~~~~~GellfTh~GiSGpavl~lS~~~~~~l~~~~~~~~~   77 (169)
T d2i0za2           1 PTEVPILSNEPFIRDRSLQGLALRDINLSVLNPK---GKAIISHKMDMLFTHFGLSGPAALRCSQFVVKALKKFKTNTIQ   77 (169)
T ss_dssp             ECSCCEECCCHHHHTTTTTTCEEEEEEEEECC-------CEEEEEEEEEECSSEEESHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred             CccCCEEeCcccccCCccCCcccCCeEEEEEeCC---CcEeeeeeccEEEEcCCccchHHHHHhHHHHHHHHhcccCceE
Confidence            7899999999875  5699999998888875321   234567899999999999999999999999888765433 589


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeE
Q 011610          320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL  399 (481)
Q Consensus       320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~  399 (481)
                      +.||++|+++.+++.+.+..+...++++++.+++..  .+|+++++.+++.+++++++++++++++++++|++.||+|+|
T Consensus        78 l~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~l~~--~lp~~l~~~ll~~~~i~~~~~~~~ls~~~~~~L~~~Lk~~~l  155 (169)
T d2i0za2          78 MSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLKG--YVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTV  155 (169)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHHTTSTTSBHHHHTTT--SSCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHHEEE
T ss_pred             EEEecCCcccHHHHHHHHHHHHHhccchhHhhhccc--ccchHHHHHHHHHcCCcccCCHHHCCHHHHHHHHHHHhCCEe
Confidence            999999999999999999999999999999999998  999999999999999999999999999999999999999999


Q ss_pred             EEcccCCCceeEEe
Q 011610          400 EVAGKGQFKDEFVT  413 (481)
Q Consensus       400 ~v~~~~~~~~a~vt  413 (481)
                      .++|+++|++|+||
T Consensus       156 ~v~g~~~~~~A~VT  169 (169)
T d2i0za2         156 NVNGTQSIEKAFVT  169 (169)
T ss_dssp             EECEECCGGGCSSE
T ss_pred             eccCCCCCCeEeeC
Confidence            99999999999998

>d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Multi-domain proteins (alpha and beta)
fold: HI0933 insert domain-like
superfamily: HI0933 insert domain-like
family: HI0933 insert domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.91  E-value=2e-25  Score=194.05  Aligned_cols=146  Identities=23%  Similarity=0.360  Sum_probs=122.2

Q ss_pred             ceeEeeeCc--cccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEE
Q 011610          244 SLFTFKIAD--SQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLT  321 (481)
Q Consensus       244 ~l~~~~~~~--~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~  321 (481)
                      +|||+.+.+  .+++.|+|++++ +.++.. .+       .+..||++|||||+|||+||++|+++.       ....+.
T Consensus         1 aLVP~t~~~~~~~l~~LsGvsv~-~~v~~~-~~-------k~~~G~lLfTh~GlSGPavL~lS~~~~-------~~~~~~   64 (148)
T d2gqfa2           1 SLVPFTYRETDKFLTALSGISLP-VTITAL-CG-------KSFYNQLLFTHRGISGPAVLQISNYWQ-------PTESVE   64 (148)
T ss_dssp             ESCCEECCGGGGGGGGGTTCEEE-EEEEET-TS-------CEEEEEEEECSSEEESHHHHHHTTTCC-------TTCCEE
T ss_pred             CCCCEEECCchhhhhcCCCceEE-EEEEEc-CC-------ceeecceEEEcCCccchHHHHHHHHhc-------cCceEE
Confidence            356666554  478899999996 555542 22       256899999999999999999999752       224578


Q ss_pred             EecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEE
Q 011610          322 VDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEV  401 (481)
Q Consensus       322 ~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v  401 (481)
                      ||++|+.+.++   .+.+....++++++.+++..  .||+|+++.+++..++ ++++|+++++++++.|++.||+|+|+|
T Consensus        65 i~l~p~~~~~~---~l~~~~~~~~kk~i~~~L~~--~lPkrl~~~ll~~~~~-~~~~~~~lsk~~~~~L~~~Lk~~~~~v  138 (148)
T d2gqfa2          65 IDLLPNHNVEE---EINQAKQSSPKQMLKTILVR--LLPKKLVELWIEQGIV-QDEVIANISKVRVKNLVDFIHHWEFTP  138 (148)
T ss_dssp             EESCSSSCHHH---HHHHHHHHCTTSBHHHHHTT--TSCHHHHHHHHHTTSS-CCCBGGGCCHHHHHHHHHHHHCEEECC
T ss_pred             EecCChhhHHH---HHHHHHHhhhhhhHHHHHHH--HhHHHHHHHHHHHcCc-ccchHHHCCHHHHHHHHHHHhCCEEee
Confidence            99999987654   57777888999999999988  8999999999998766 688999999999999999999999999


Q ss_pred             cccCCCceeE
Q 011610          402 AGKGQFKDEF  411 (481)
Q Consensus       402 ~~~~~~~~a~  411 (481)
                      +|+.||++||
T Consensus       139 ~Gt~Gf~~AE  148 (148)
T d2gqfa2         139 NGTEGYRTAE  148 (148)
T ss_dssp             SEECCTTTCS
T ss_pred             cCCCChhhhC
Confidence            9999999986

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.86  E-value=5e-21  Score=187.61  Aligned_cols=181  Identities=20%  Similarity=0.249  Sum_probs=114.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCC-------CcchhHHhhc-----
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGH-------CADKMILAGH-----  114 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~-------~~~~~~~~~~-----  114 (481)
                      ++++||||||+|++||+||++|++  .|++|+||||.... .....++++.+ ..+..       ..+...+...     
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~--~G~~V~vlEK~~~~gG~S~~a~Ggi~-a~~~~~~~~~g~~d~~~~~~~d~~~~~   93 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGNSMISAGGMN-AVGTKQQTAHGVEDKVEWFIEDAMKGG   93 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTTGGGCCSCEE-CSSCHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCchhhcCCCcc-cccchhhhhcccCCcHHHHHHHHHHhh
Confidence            357999999999999999999999  78999999987543 33333333322 11110       0011111111     


Q ss_pred             cCCCChhchhhHHhcCChHHHHHHHHhcCCcceeec--CC-----eeeecC--CChHHHHHHHHHHHHhCCCEEEcCceE
Q 011610          115 YPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTED--DG-----RVFPVS--DSSSSVIDCLLTEAKHRGVVLQTGKVV  185 (481)
Q Consensus       115 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~--~g-----~~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V  185 (481)
                      ....+..+.+.+..  ...+.++|++++|+++....  .+     ...|..  .....++..|.+.+++.|+++++++++
T Consensus        94 ~~~~d~~lv~~~~~--~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v  171 (317)
T d1qo8a2          94 RQQNDIKLVTILAE--QSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRV  171 (317)
T ss_dssp             TTCSCHHHHHHHHH--HHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEE
T ss_pred             ccccchhHHHHHHh--hhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccch
Confidence            11122333322211  12467789999998875422  11     122222  224568899999999999999999999


Q ss_pred             EEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHc
Q 011610          186 TTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQL  234 (481)
Q Consensus       186 ~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~  234 (481)
                      +++..++++...+|...+ ..+....+.|+.||+|||+.+..+.+.+.+
T Consensus       172 ~~l~~~~~g~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~  219 (317)
T d1qo8a2         172 VKLVVNDDHSVVGAVVHG-KHTGYYMIGAKSVVLATGGYGMNKEMIAYY  219 (317)
T ss_dssp             EEEEECTTSBEEEEEEEE-TTTEEEEEEEEEEEECCCCCTTCHHHHHHH
T ss_pred             hheeecccccceeeEeec-ccceEEEEeccceEEeccccccCHHHHHHh
Confidence            999776523455677664 233345789999999999987666766654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.84  E-value=8e-20  Score=179.16  Aligned_cols=183  Identities=20%  Similarity=0.318  Sum_probs=115.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccC------CCcc-hhHHhhc----
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNG------HCAD-KMILAGH----  114 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~------~~~~-~~~~~~~----  114 (481)
                      ..+.+||+|||+|++||+||+.|++  .|++|+||||... ++....++++.+ ..+.      ...+ ...+...    
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~--~G~~V~llEk~~~~gG~s~~s~Ggi~-~~~~~~~~~~~~~d~~~~~~~d~~~~   96 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTKLAAGGMN-AAETKPQAKLGIEDKKQIMIDDTMKG   96 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHT--TTCCEEEECSSSSSCTTGGGCCSCEE-CSSCHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccCCccc-ccCchhhhhcccCCCHHHHHHHHHhc
Confidence            4457899999999999999999999  7999999997644 433333333321 1111      0111 1111111    


Q ss_pred             -cCCCChhchhhHHhcCChHHHHHHHHhcCCcceeec--CC-----eeeecC--CChHHHHHHHHHHHHhCCCEEEcCce
Q 011610          115 -YPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTED--DG-----RVFPVS--DSSSSVIDCLLTEAKHRGVVLQTGKV  184 (481)
Q Consensus       115 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~--~g-----~~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~~~  184 (481)
                       .......+...+..  ...+.++|+.++|+++....  .+     ..+|..  .....+.+.|.+.+.+.|++|+++++
T Consensus        97 ~~~~~d~~~~~~~~~--~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~  174 (322)
T d1d4ca2          97 GRNINDPELVKVLAN--NSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSR  174 (322)
T ss_dssp             TTTCSCHHHHHHHHH--THHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEE
T ss_pred             cccccCHHHhhhhhh--hhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeee
Confidence             11122223222211  23567889999998875421  11     122221  24567889999999999999999999


Q ss_pred             EEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610          185 VTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG  235 (481)
Q Consensus       185 V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G  235 (481)
                      |+++..++++...+|.+.+ ..++...+.|+.||+|||+.+..+.+.+++.
T Consensus       175 v~~li~d~~G~V~Gv~~~~-~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~  224 (322)
T d1d4ca2         175 VVRILEDASGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFAKNNERVSKYD  224 (322)
T ss_dssp             EEEEECCSSSCCCEEEEEE-TTTEEEEEECSEEEECCCCCTTCHHHHHHHC
T ss_pred             cccccccccccccceEEEe-ecccEEEEeCCeEEEcCCCcccCHHHHHhhC
Confidence            9999886523445676654 2233457999999999998776666666543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.83  E-value=1.8e-19  Score=175.28  Aligned_cols=181  Identities=22%  Similarity=0.275  Sum_probs=114.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCC------Ccc-hhHHhh-----c
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGH------CAD-KMILAG-----H  114 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~------~~~-~~~~~~-----~  114 (481)
                      .++|||||||||++|++||++|++  .|++|+||||... +.....++++.+. ....      ..+ ...+..     .
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~--~G~~V~lvEK~~~~gG~s~~s~G~~~~-~~~~~~~~~~~~d~~~~~~~d~~~~~   90 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAKLAAGGMNA-AWTDQQKAKKITDSPELMFEDTMKGG   90 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGCCSCEEC-SSCHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcceecCCCCcc-ccchhhhhhhccchHHHHHHHHHhhh
Confidence            357999999999999999999999  7999999997744 3333333333221 1110      001 111111     0


Q ss_pred             cCCCChhchhhHHhcCChHHHHHHHHhcCCcceeecC--C-----eeeecC--CChHHHHHHHHHHHHhCCCEEEcCceE
Q 011610          115 YPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDD--G-----RVFPVS--DSSSSVIDCLLTEAKHRGVVLQTGKVV  185 (481)
Q Consensus       115 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~--g-----~~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V  185 (481)
                      .....+.+...+..  ...+.++|+.++|+++.....  +     ..+|..  .....++..+.+.+.+.|++|+++++|
T Consensus        91 ~~~~d~~lv~~~~~--~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v  168 (308)
T d1y0pa2          91 QNINDPALVKVLSS--HSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG  168 (308)
T ss_dssp             TTCSCHHHHHHHHH--HHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEE
T ss_pred             hhccchHHHHHHHH--hhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeecc
Confidence            11112222222111  124677899999987754321  1     223322  224567888999999999999999999


Q ss_pred             EEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHc
Q 011610          186 TTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQL  234 (481)
Q Consensus       186 ~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~  234 (481)
                      +++..++++...+|.+.+ ..++...++|+.||+|||+.+..+.+.+++
T Consensus       169 ~~li~~~~G~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~  216 (308)
T d1y0pa2         169 IEVLKDDKGTVKGILVKG-MYKGYYWVKADAVILATGGFAKNNERVAKL  216 (308)
T ss_dssp             EEEEECTTSCEEEEEEEE-TTTEEEEEECSEEEECCCCCTTCHHHHHHH
T ss_pred             chhhhhcccccccccccc-cccceeEeecCeEEEccCcccccHHHHHHh
Confidence            999886523455777764 223346799999999999987667776654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=8.6e-18  Score=165.20  Aligned_cols=173  Identities=16%  Similarity=0.162  Sum_probs=107.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCCcchhHHhhc-----cCCCChh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCADKMILAGH-----YPRGHKE  121 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~~~~~~~~~~-----~~~~~~~  121 (481)
                      .++||+|||+|+|||+||++|++  .|.+|+|+||....+  +..+.|+-.....+....++..+...     ..-.++.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~--~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~~   83 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQD   83 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCHH
Confidence            57999999999999999999999  789999999875432  22222321111111111112111111     1112333


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecCCeeee---------------------cCCChHHHHHHHHHHHHhCCCEEE
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------------------VSDSSSSVIDCLLTEAKHRGVVLQ  180 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------------------~~~~a~~~~~~l~~~~~~~Gv~i~  180 (481)
                      +++.+. . ...+.++|++.+|+++....++.++.                     .......++..|.+.+++.+++++
T Consensus        84 ~v~~l~-~-~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~~~v~~~  161 (330)
T d1neka2          84 AIEYMC-K-TGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF  161 (330)
T ss_dssp             HHHHHH-H-HHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHH-H-HhHHHHHHHhhccccccccCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHHhcCCeEE
Confidence            433321 1 22467789999999876544332210                     011246788999999999999999


Q ss_pred             cCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          181 TGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       181 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      .++.+.++..++++....+..-+..++.-..+.|+.||+|||+.+
T Consensus       162 ~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~  206 (330)
T d1neka2         162 SEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (330)
T ss_dssp             CSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred             EEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence            999999998754233444443332334456799999999999754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.66  E-value=4.1e-16  Score=148.95  Aligned_cols=175  Identities=17%  Similarity=0.180  Sum_probs=105.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccCCC--cchhH-----------Hhhc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHC--ADKMI-----------LAGH  114 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~~~--~~~~~-----------~~~~  114 (481)
                      .+|||+|||||++|+++|++|++  +|++|+|||+...+. .....+++.+ +.....  .....           +...
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~--~G~~V~viE~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~l~~~s~~~~~~l~~e   78 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPHTNGSHHGDTRI-IRHAYGEGREYVPLALRSQELWYELEKE   78 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSCSSSSSCSSEEE-ECSSCTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcccccCCCcce-eecccCCcchhhhhcccccceeecchhh
Confidence            57999999999999999999999  799999999764432 1111111111 111111  00000           0000


Q ss_pred             cCCC----ChhchhhHHhcCC---hHHHHHHHHhcCCcceeecC-----------------CeeeecC--CChHHHHHHH
Q 011610          115 YPRG----HKEFRGSFFSLHG---PMDTMSWFSDHGVELKTEDD-----------------GRVFPVS--DSSSSVIDCL  168 (481)
Q Consensus       115 ~~~~----~~~~~~~~l~~~~---~~~~~~~~~~~Gi~~~~~~~-----------------g~~~p~~--~~a~~~~~~l  168 (481)
                      ....    ...+.  ....-.   ..+..+..+.+|.+...-+.                 +...|..  .....+..+|
T Consensus        79 ~~~~~~~~~g~l~--~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l  156 (281)
T d2gf3a1          79 THHKIFTKTGVLV--FGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAY  156 (281)
T ss_dssp             CSSCCEECCCEEE--EEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHH
T ss_pred             hhhccccccceee--eeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeecccccccccccccccc
Confidence            0000    00000  000000   12233444555544322110                 0111211  1356788999


Q ss_pred             HHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          169 LTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       169 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+.+++.|++++++++|++|+.++  +.+.|+|++      .++.||.||+|+|++.  ..+++.+|+++
T Consensus       157 ~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~V~t~~------g~i~a~~VViAaG~~s--~~l~~~lg~~~  216 (281)
T d2gf3a1         157 RELAEARGAKVLTHTRVEDFDISP--DSVKIETAN------GSYTADKLIVSMGAWN--SKLLSKLNLDI  216 (281)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECS--SCEEEEETT------EEEEEEEEEECCGGGH--HHHGGGGTEEC
T ss_pred             ccccccccccccCCcEEEEEEEEC--CEEEEEECC------cEEEcCEEEECCCCcc--hhhHHhcCCcc
Confidence            999999999999999999999876  678899884      5799999999999876  46888888764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.65  E-value=9.4e-16  Score=145.77  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=60.8

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      ++..+...|.+.+++.|++|+++++|++|+.++  +.+.|++++      .+|.||.||+|+|++.  ..+++.+|++..
T Consensus       149 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~t~~------g~i~a~~vV~AaG~~s--~~l~~~~G~~~~  218 (276)
T d1ryia1         149 EPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EALFIKTPS------GDVWANHVVVASGVWS--GMFFKQLGLNNA  218 (276)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSEEEEETT------EEEEEEEEEECCGGGT--HHHHHHTTCCCC
T ss_pred             ecccchhHHHHHHHHcCCEEecceEEEeEEeec--ceEEEecCC------eEEEcCEEEECCCccH--HHHHhhcCCCcc
Confidence            567888999999999999999999999998764  778999884      5799999999999876  578999998753

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=6e-15  Score=143.40  Aligned_cols=188  Identities=20%  Similarity=0.228  Sum_probs=117.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCCcchhHHhhc-----cCCCChh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCADKMILAGH-----YPRGHKE  121 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~~~~~~~~~~-----~~~~~~~  121 (481)
                      .++||+|||+|+|||+||+++++.++|.+|+||||....+  +..++|+... ..+.. .++..+...     .......
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a-~~~~~-Ds~e~~~~dt~~~g~~~~d~~   81 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAA-VAQDH-DSFEYHFHDTVAGGDWLCEQD   81 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEEC-CCSTT-CCHHHHHHHHHHHTTTCSCHH
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhh-hcCCC-CCHHHHHHHHHhhccCccHHH
Confidence            4689999999999999999999866789999999875442  3333333211 11111 111111111     1112333


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeecCCee-------------eec-CCChHHHHHHHHHH-HHhCCCEEEcCceEE
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV-------------FPV-SDSSSSVIDCLLTE-AKHRGVVLQTGKVVT  186 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-------------~p~-~~~a~~~~~~l~~~-~~~~Gv~i~~~~~V~  186 (481)
                      +++.+. . ...+...|+.++|+++.....+..             ++. ......++..+++. ++..+|+|+.+++|+
T Consensus        82 ~v~~~~-~-~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~  159 (311)
T d1kf6a2          82 VVDYFV-H-HCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVL  159 (311)
T ss_dssp             HHHHHH-H-HHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEE
T ss_pred             HHHHHH-H-hhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEee
Confidence            333321 1 123567889999988775443221             111 11223444444444 445689999999999


Q ss_pred             EEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccC
Q 011610          187 TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDP  241 (481)
Q Consensus       187 ~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~  241 (481)
                      +|..++ +...++...+..++.-..+.|+.||+|||+              +|+|+.+|.++|..+..+
T Consensus       160 ~Ll~d~-g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa~l~dm  227 (311)
T d1kf6a2         160 DILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDM  227 (311)
T ss_dssp             EEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEESC
T ss_pred             eeEecC-CcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcccceeec
Confidence            999886 555666654423344467899999999995              578899999999987654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.57  E-value=1.8e-14  Score=140.99  Aligned_cols=183  Identities=17%  Similarity=0.169  Sum_probs=112.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCC--cc-hhHHhh----c-cCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHC--AD-KMILAG----H-YPRG  118 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~--~~-~~~~~~----~-~~~~  118 (481)
                      ..|||||||||+|||+||++|++  .|++|+||||..+++  +..+.|+-.....+...  .+ +.....    . ....
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~--~G~~V~liEK~~~~~g~S~~a~GGi~a~~~~~~~~~~ds~~~~~~d~~~~g~~~~   81 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGC   81 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCS
T ss_pred             eecCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCCchhhccchHhhhccccccCCCCCHHHHHHHHHHhhcccc
Confidence            45899999999999999999999  799999999876653  22222321111111100  01 111110    0 1111


Q ss_pred             ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCee------------------------------ee-----cCCChHH
Q 011610          119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV------------------------------FP-----VSDSSSS  163 (481)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~------------------------------~p-----~~~~a~~  163 (481)
                      ...+.+.+. . ...+...|+..+|+++.....+..                              .+     .......
T Consensus        82 ~~~~v~~~~-~-~~~~~i~~l~~~g~~f~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~r~~~~~~~~G~~  159 (336)
T d2bs2a2          82 DQKVARMFV-N-TAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHT  159 (336)
T ss_dssp             CHHHHHHHH-H-HHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHH
T ss_pred             cHHHHHHHH-H-hccHHHHHHHHhcCCccccccccccccccccccccccccccccceecccCCCcceeeeEeecCCCHHH
Confidence            222222211 1 123566788888887653322110                              00     0011356


Q ss_pred             HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHH
Q 011610          164 VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHR  229 (481)
Q Consensus       164 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~  229 (481)
                      +...|.+.+++.|++|+.++++.++..++ +..+++...+..++....+.|+.||+|||+              +|+++.
T Consensus       160 i~~~l~~~~~~~gv~i~~~~~~~~li~~~-~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~  238 (336)
T d2bs2a2         160 MLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA  238 (336)
T ss_dssp             HHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred             HHHHHHHHHHhccccccceeeeeeccccc-ccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence            88889999999999999999999999876 455566665434454567999999999995              356677


Q ss_pred             HHHHcCC
Q 011610          230 LAAQLGH  236 (481)
Q Consensus       230 la~~~G~  236 (481)
                      ++...|.
T Consensus       239 ~~~~~G~  245 (336)
T d2bs2a2         239 IALETGI  245 (336)
T ss_dssp             HHHTTSS
T ss_pred             hhhhhhh
Confidence            7777773

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.55  E-value=4e-14  Score=136.48  Aligned_cols=76  Identities=20%  Similarity=0.306  Sum_probs=63.2

Q ss_pred             ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610          160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV  239 (481)
Q Consensus       160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~  239 (481)
                      ++..+...|.+.+++.|++|+++++|++|+.++ +..+.|+|++      .+++||+||+|+|++.  ..+++.+|..+ 
T Consensus       146 ~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~-~~v~~V~T~~------g~i~a~~VV~aaG~~s--~~l~~~~g~~l-  215 (305)
T d1pj5a2         146 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTAD------GVIPADIVVSCAGFWG--AKIGAMIGMAV-  215 (305)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETT------EEEECSEEEECCGGGH--HHHHHTTTCCC-
T ss_pred             chhhhhhhHHhhhhcccccccCCceEEEEEEeC-CEEEEEeccc------eeEECCEEEEecchhH--HHHHHHcCCcc-
Confidence            567889999999999999999999999999886 4456788874      5799999999999876  67889899875 


Q ss_pred             cCCCce
Q 011610          240 DPVPSL  245 (481)
Q Consensus       240 ~~~p~l  245 (481)
                      |..+..
T Consensus       216 P~~~~~  221 (305)
T d1pj5a2         216 PPDGGP  221 (305)
T ss_dssp             CTTSCC
T ss_pred             cccccc
Confidence            555543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=5.7e-14  Score=135.75  Aligned_cols=187  Identities=18%  Similarity=0.182  Sum_probs=105.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccCCCcchhHHhhc-----cCCCChh
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGH-----YPRGHKE  121 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~~~~~~~~~~~~-----~~~~~~~  121 (481)
                      .++|||||||+|+|||+||++|++  .+ +|+||||....+ ....+++|-+..... ..++..+...     .......
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~--~g-~V~llEK~~~~gG~s~~a~Ggi~a~~~~-~D~~~~~~~d~~~~~~~~~~~~   80 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLAD--QH-QVIVLSKGPVTEGSTFYAQGGIAAVFDE-TDSIDSHVEDTLIAGAGICDRH   80 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT--TS-CEEEECSSCTTC-------------CCS-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred             cccCCEEEECccHHHHHHHHHhhc--CC-CEEEEECCCCCCCchHHhCcceEEEECC-CCCHHHHHHHhhhcccCcccHH
Confidence            457999999999999999999988  56 999999875543 333333332211111 0011111111     1112233


Q ss_pred             chhhHHhcCChHHHHHHHHhcCCcceeec-------------CCeeeecCC-----ChH-HHHHHHHHHHHhCCCEEEcC
Q 011610          122 FRGSFFSLHGPMDTMSWFSDHGVELKTED-------------DGRVFPVSD-----SSS-SVIDCLLTEAKHRGVVLQTG  182 (481)
Q Consensus       122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~-------------~g~~~p~~~-----~a~-~~~~~l~~~~~~~Gv~i~~~  182 (481)
                      +...+..  ...+..+|+.++++++....             .+..+|...     ... .+...+.+.+++.+++++.+
T Consensus        81 ~~~~~~~--~~~e~~~~l~~~g~~f~~~~~~~~~~~~~~~~~gg~s~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  158 (305)
T d1chua2          81 AVEFVAS--NARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLER  158 (305)
T ss_dssp             HHHHHHH--HHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECS
T ss_pred             HHHHHHH--hcchhhhHHHhcCCccccccccccccchhccccCCCccCeEEecCCCCCchhHHHHHHHHHhccCcceece
Confidence            3322211  12467788888887664311             112222111     111 12233456667789999999


Q ss_pred             ceEEEEEecCCC-------CeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccC
Q 011610          183 KVVTTASSDNAG-------RKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDP  241 (481)
Q Consensus       183 ~~V~~i~~~~~~-------~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~  241 (481)
                      ++++++..++ +       ...++...+...+....+.++.||+|||+              +|+|+.|+.++|.++..+
T Consensus       159 ~~~~~Li~~~-~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA~~aGa~l~~m  237 (305)
T d1chua2         159 TNAVDLIVSD-KIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANC  237 (305)
T ss_dssp             EEEEEEEEGG-GTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHHHHTTCCEECS
T ss_pred             eEEEEEEEEc-CcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEeeccccceeeEec
Confidence            9999998765 2       24567665433444567899999999995              468899999999988653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.35  E-value=1.4e-11  Score=120.93  Aligned_cols=193  Identities=14%  Similarity=0.094  Sum_probs=109.4

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhcc--CCCCcEEEEeCCCCCCc-eEEecCCceeeccCC-----Ccc-hhHHhhc---
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTV--APKLNVVIIEKGKPLSK-VKISGGGRCNVTNGH-----CAD-KMILAGH---  114 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~--~~g~~V~llE~~~~g~k-~~~sG~g~~n~~~~~-----~~~-~~~~~~~---  114 (481)
                      ...++||||||+|+|||+||++|++.  .+|++|+||||...++. ....|+...+.....     ..+ ...+...   
T Consensus        18 e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~~~~~~Ds~e~~~~d~~~   97 (356)
T d1jnra2          18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTL   97 (356)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHH
T ss_pred             eEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhHHHHHHHHHhccccccccCccCCHHHHHHHHHH
Confidence            34579999999999999999999751  26899999998765532 111121111111100     011 1111111   


Q ss_pred             --cCCCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeec-------CCChHHHHHHHHHHHHhCCCEEEcCceE
Q 011610          115 --YPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV-------SDSSSSVIDCLLTEAKHRGVVLQTGKVV  185 (481)
Q Consensus       115 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V  185 (481)
                        -......+...+  .....+..+|+.++|+++.....+.....       ..................++.++..+.+
T Consensus        98 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  175 (356)
T d1jnra2          98 DMMGLAREDLVADY--ARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFI  175 (356)
T ss_dssp             HTTTCCCHHHHHHH--HHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEE
T ss_pred             hccCCccHHHHHHH--HHhcchhhhhHHhhCCCccccccccccccccceeccccccHHHHHHHHHHhhhcceEEEEEEEE
Confidence              111122222221  11234567889999988765443322111       1122233344444555667888888888


Q ss_pred             EEEEecCC--CCeEEEEEeecccCceEEEEcCeEEEccCC-----------------------ChhHHHHHHHcCCCccc
Q 011610          186 TTASSDNA--GRKFLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQQGHRLAAQLGHSIVD  240 (481)
Q Consensus       186 ~~i~~~~~--~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~g~g~~la~~~G~~i~~  240 (481)
                      +.+.....  +....+...+..++....+.|+.||+|||+                       +|+|..++.+.|..+..
T Consensus       176 ~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~  255 (356)
T d1jnra2         176 FELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGAMLTQ  255 (356)
T ss_dssp             EEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBSHHHHHHHHHTCCEES
T ss_pred             EEeeeecccccceeeeEEEEeecCcEEEeeCCEEEEcCCCccccccCCCCccccccccCCCCcCChHHHHHHHhhhhhcC
Confidence            88875321  123333333323344568999999999995                       36789999999988754


Q ss_pred             C
Q 011610          241 P  241 (481)
Q Consensus       241 ~  241 (481)
                      +
T Consensus       256 ~  256 (356)
T d1jnra2         256 A  256 (356)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=5.5e-12  Score=116.00  Aligned_cols=61  Identities=10%  Similarity=0.064  Sum_probs=44.8

Q ss_pred             eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEE
Q 011610          153 RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLI  219 (481)
Q Consensus       153 ~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIl  219 (481)
                      ..||. .....+.+.|.+.++++|++|+++++|++|..+++++.+.+.+.+     ++++.||+||.
T Consensus       228 ~~~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-----g~~~~ad~VI~  288 (297)
T d2bcgg1         228 YLYPM-YGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK-----LGTFKAPLVIA  288 (297)
T ss_dssp             EEEET-TCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET-----TEEEECSCEEE
T ss_pred             ceecc-CcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcC-----CEEEECCEEEE
Confidence            34543 334568899999999999999999999999875423444433343     67899999875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.32  E-value=3.9e-12  Score=122.33  Aligned_cols=138  Identities=21%  Similarity=0.258  Sum_probs=90.9

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchh
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRG  124 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~  124 (481)
                      ..+..+||+|||||++|+++|.+|++  .|.+|+|+|++ .+|        |.+.. |.           |+...-+...
T Consensus         3 ~p~~~~dV~IIGAG~sGl~~a~~L~~--~G~~v~i~Ek~~~iG--------GtW~~-n~-----------ypg~~~d~~~   60 (298)
T d1w4xa1           3 QPPEEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVG--------GVWYW-NR-----------YPGARCDIES   60 (298)
T ss_dssp             CCCSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC--------THHHH-CC-----------CTTCBCSSCT
T ss_pred             CCCCCCCEEEECccHHHHHHHHHHHh--CCCCEEEEEcCCCcc--------ccccc-CC-----------CCCceecccc
Confidence            34568999999999999999999999  79999999965 666        33211 11           1000000000


Q ss_pred             hHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCCCCeEEEEEe
Q 011610          125 SFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                      . ...++...  ..+....       ....||   ....+.++|.+.+++.++  .|+++++|+++..+++.+.|.|++.
T Consensus        61 ~-~~~~s~~~--~~~~~~~-------~~~~~p---~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~  127 (298)
T d1w4xa1          61 I-EYCYSFSE--EVLQEWN-------WTERYA---SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN  127 (298)
T ss_dssp             T-TSSCCSCH--HHHHHCC-------CCBSSC---BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET
T ss_pred             c-cccccccc--cccCCCC-------CccccC---ccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccc
Confidence            0 00111000  0111110       012233   456788999999999998  5999999999987543468999997


Q ss_pred             ecccCceEEEEcCeEEEccCC
Q 011610          203 KRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       203 ~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      +     +.++++|.||+|||-
T Consensus       128 ~-----~~~~~~~~~i~atG~  143 (298)
T d1w4xa1         128 H-----GDRIRARYLIMASGQ  143 (298)
T ss_dssp             T-----CCEEEEEEEEECCCS
T ss_pred             c-----ccccccceEEEeecc
Confidence            6     678999999999994

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.28  E-value=5.8e-12  Score=123.01  Aligned_cols=165  Identities=11%  Similarity=0.127  Sum_probs=91.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEec--CCceeeccCCC---cchhHHhhccCCCChhc
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISG--GGRCNVTNGHC---ADKMILAGHYPRGHKEF  122 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG--~g~~n~~~~~~---~~~~~~~~~~~~~~~~~  122 (481)
                      ...+|+|||||+||++||..|++.+.+.+|+|+||. .+|+......  +..+.......   .+...............
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   82 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   82 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence            457899999999999999999874344699999965 6663211100  11111111000   00000000000000011


Q ss_pred             hhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610          123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE  202 (481)
Q Consensus       123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~  202 (481)
                      +. .+....+.....+   ..  .........||   ....+.++|...++..+..|+++++|++++.++  +.|.|++.
T Consensus        83 y~-~l~~~~~~~~~~~---~~--~~~~~~~~~f~---~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~--~~w~Vt~~  151 (335)
T d2gv8a1          83 YR-DLQTNTPIELMGY---CD--QSFKPQTLQFP---HRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSWVVTYK  151 (335)
T ss_dssp             CT-TCBCSSCHHHHSC---TT--CCCCTTCCSSC---BHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET--TEEEEEEE
T ss_pred             ch-hhhcCCcHhhhhh---hh--hcCCcccccCC---chHHHHHHHHHHHHHhhhcccCceEEEEEEecC--CEEEEEEE
Confidence            10 1111112222111   01  11112234454   356788888888888889999999999999875  78988887


Q ss_pred             ecccCc-eEEEEcCeEEEccCCC
Q 011610          203 KRTMNL-VECIEADYLLIASGSS  224 (481)
Q Consensus       203 ~~~~~~-~~~i~ad~VIlAtG~~  224 (481)
                      +...+. ...+.+|+||+|||..
T Consensus       152 ~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         152 GTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             ESSTTCCEEEEEESEEEECCCSS
T ss_pred             ecCCCCeEEEEEeeEEEEccccc
Confidence            533322 2456799999999953

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.17  E-value=1.6e-11  Score=116.20  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=32.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS   88 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~   88 (481)
                      +||+|||||++||+||+.|++  .|++|+|||+ +.+|+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GG   37 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSBT
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCc
Confidence            589999999999999999999  7999999995 47774

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=1.9e-10  Score=105.02  Aligned_cols=118  Identities=12%  Similarity=0.046  Sum_probs=73.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC--CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .|||||||||+||+.||+.+++  .|.+|+||+++  .++       ...||........            ..+.+   
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR--~G~ktllit~~~~~ig-------~~~cnp~~gg~~k------------g~l~r---   57 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVM-------MPFLPPKPPFPPG------------SLLER---   57 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTT-------CCSSCCCSCCCTT------------CHHHH---
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEEeccchhc-------ccccCCccccCCC------------cceee---
Confidence            5999999999999999999999  79999999964  343       3445433322110            01110   


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM  206 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~  206 (481)
                       ..+.         .|               ..-......+.+.+. ..++.++.. +|.++..++ +....|++.+   
T Consensus        58 -eid~---------kG---------------~av~a~raQ~k~~l~~~~nL~i~q~-~V~dli~e~-~~v~gV~t~~---  107 (230)
T d2cula1          58 -AYDP---------KD---------------ERVWAFHARAKYLLEGLRPLHLFQA-TATGLLLEG-NRVVGVRTWE---  107 (230)
T ss_dssp             -HCCT---------TC---------------CCHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEET-TEEEEEEETT---
T ss_pred             -eeec---------cc---------------hhhhhHHHHHHHHHhhhcCHHHHhc-cceeeEecc-cceeeEEecc---
Confidence             0000         00               000111111222222 346777644 688887775 4566899886   


Q ss_pred             CceEEEEcCeEEEccCC
Q 011610          207 NLVECIEADYLLIASGS  223 (481)
Q Consensus       207 ~~~~~i~ad~VIlAtG~  223 (481)
                        +.+|.|+.||+|||.
T Consensus       108 --G~~~~AkaVILtTGT  122 (230)
T d2cula1         108 --GPPARGEKVVLAVGS  122 (230)
T ss_dssp             --SCCEECSEEEECCTT
T ss_pred             --ccEEEEeEEEEccCc
Confidence              778999999999993

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2e-10  Score=111.24  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=38.1

Q ss_pred             HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610          172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS  223 (481)
Q Consensus       172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~  223 (481)
                      +++.|++|+++++|.+|..++  +.+.|++.+     +.++.||+||+|+..
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~--~~v~v~~~~-----g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTR--ENVLVETLN-----HEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSS--SSEEEEETT-----SCEEEESEEEECSCG
T ss_pred             HHHcCCeEEecCcceEEEecC--CeEEEEECC-----CCEEECCEEEECCCH
Confidence            456799999999999998775  668888876     778999999999863

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.08  E-value=3.5e-11  Score=113.01  Aligned_cols=46  Identities=37%  Similarity=0.611  Sum_probs=40.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcch
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK  108 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~  108 (481)
                      |||+||||||+|++||+.|++  .|++|+|+|++.+|        |.|  .|..|.++
T Consensus         2 yDviVIG~G~aG~~aA~~aa~--~G~~V~liE~~~~G--------Gtc--~n~gciPs   47 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAAR--HNAKVALVEKSRLG--------GTC--VNVGCVPK   47 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSTT--------HHH--HHTSHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCC--------CeE--EeeCCcch
Confidence            899999999999999999999  79999999988776        778  56666553

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.08  E-value=4.2e-10  Score=108.05  Aligned_cols=48  Identities=13%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      +++.|++|+++++|++|..++  +.+.|.... ..+.+.++.||.||+|++
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~--~~v~v~~~~-~~~~~~~~~aD~VI~A~p  292 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQND--QKVTVVYET-LSKETPSVTADYVIVCTT  292 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECS--SCEEEEEEC-SSSCCCEEEESEEEECSC
T ss_pred             HHhcCCccccCceEEEEEEeC--CeEEEEEEe-cCCCeEEEEeeEEEecCC
Confidence            456799999999999999875  666666543 233456899999999986

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=5.8e-10  Score=105.86  Aligned_cols=148  Identities=15%  Similarity=0.162  Sum_probs=83.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      |++||+||||||+||++|+.|++  .|++|+|||+.....   ..+..+....+.   ....+.+.+             
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~--~G~~v~vlE~~~~~~---~~~~~~~~~l~~---~~~~~l~~l-------------   59 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQTPDY---VLGRIRAGVLEQ---GMVDLLREA-------------   59 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCHHH---HHTCCCCCEECH---HHHHHHHHT-------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCC---CCCCceEEEECH---HHHHHHHHc-------------
Confidence            46899999999999999999999  799999999653110   000011100000   001111111             


Q ss_pred             cCChHHHHHHHHhcCCcce---eecCCe------------eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC
Q 011610          129 LHGPMDTMSWFSDHGVELK---TEDDGR------------VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA  193 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~---~~~~g~------------~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~  193 (481)
                        +..+.   +...+.+..   ......            ..........+.+.|.+.+++.+..+..+..+......+ 
T Consensus        60 --g~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-  133 (292)
T d1k0ia1          60 --GVDRR---MARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQ-  133 (292)
T ss_dssp             --TCCHH---HHHHCEEESCEEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTT-
T ss_pred             --CchHH---HHhhcccccceEEEecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeec-
Confidence              11110   011111000   000000            000112356788889999999998888888777666554 


Q ss_pred             CCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          194 GRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       194 ~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ++.+.|++..  +++..+++||.||.|+|..+
T Consensus       134 ~~~~~v~~~~--~g~~~~i~a~~vVgADG~~S  163 (292)
T d1k0ia1         134 GERPYVTFER--DGERLRLDCDYIAGCDGFHG  163 (292)
T ss_dssp             SSSCEEEEEE--TTEEEEEECSEEEECCCTTC
T ss_pred             cCceEEEEec--CCcEEEEEeCEEEECCCCCC
Confidence            4556666543  23335789999999999765

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.96  E-value=9.3e-11  Score=106.84  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=33.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ++|||+||||||+|++||+.+++  .|.+|+|||+. .+|
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCC
Confidence            57999999999999999999999  68999999965 444

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.95  E-value=3.1e-09  Score=100.39  Aligned_cols=143  Identities=20%  Similarity=0.201  Sum_probs=87.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      .++||+|||||++|++||+.|+++ .|++|+|||+. .+|        |.|.  +..+        .+.  ...+.    
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~~G--------G~~~--~~g~--------~~~--~~~~~----   86 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPG--------GGAW--LGGQ--------LFS--AMIVR----   86 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCC--------TTTT--CCST--------TCC--CEEEE----
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCCCC--------Ccee--ecCE--------EcC--HHHHh----
Confidence            468999999999999999999862 59999999965 666        3331  1111        010  00000    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec---
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR---  204 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~---  204 (481)
                           .....++.+.|+.+....  ..++.......+...+.+.+...++.+..++.+.++..++ +....+.....   
T Consensus        87 -----~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~gv~~~~~~~~  158 (278)
T d1rp0a1          87 -----KPAHLFLDEIGVAYDEQD--TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWALVA  158 (278)
T ss_dssp             -----TTTHHHHHHHTCCCEECS--SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEET-TEEEEEEEEEHHHH
T ss_pred             -----hhHHHHHHHcCCceecCC--ccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecC-CeEEEEEeccceee
Confidence                 011123445666655433  2222233344455566666777889999999999988765 33334432210   


Q ss_pred             ------ccCceEEEEcCeEEEccCCC
Q 011610          205 ------TMNLVECIEADYLLIASGSS  224 (481)
Q Consensus       205 ------~~~~~~~i~ad~VIlAtG~~  224 (481)
                            .......+.++.||.|+|.+
T Consensus       159 ~~~~~~~~~~~~~~~a~~vv~a~G~~  184 (278)
T d1rp0a1         159 QNHHTQSCMDPNVMEAKIVVSSCGHD  184 (278)
T ss_dssp             TCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred             eeecccccccceeeccceEEECcCCC
Confidence                  01123679999999999965

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=5.1e-10  Score=101.67  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      ++|||+||||||+|++||+.|++  .|.+|+|||++.+|
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~~~~G   37 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAM--YGQKCALIEAKELG   37 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeccCcC
Confidence            36999999999999999999999  79999999998776

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.95  E-value=5.6e-09  Score=97.04  Aligned_cols=47  Identities=17%  Similarity=0.190  Sum_probs=39.4

Q ss_pred             HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ...++.++++++|+++..++  +.+.|++++     +.++++|.+|.|+|..+.
T Consensus       107 ~~~~~~~~~~~~v~~~~~~~--~~v~v~~~d-----G~~~~~d~~v~adG~~s~  153 (265)
T d2voua1         107 LFGPERYHTSKCLVGLSQDS--ETVQMRFSD-----GTKAEANWVIGADGGASV  153 (265)
T ss_dssp             HHCSTTEETTCCEEEEEECS--SCEEEEETT-----SCEEEESEEEECCCTTCH
T ss_pred             hcccceeecCcEEEEEEeeC--CceEEEECC-----CCEEEEEEEecccccccc
Confidence            34578999999999999875  678888886     778999999999997653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.1e-09  Score=96.45  Aligned_cols=40  Identities=28%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ......+|+|||||||||+||+.|++  +|++|+|+|+. .+|
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIG   79 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSC
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccCccC
Confidence            34456899999999999999999999  79999999975 565

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=3.3e-09  Score=94.29  Aligned_cols=112  Identities=22%  Similarity=0.309  Sum_probs=77.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      +.+||+||||||+||.||+.|++  .|++|+|||+...+        ++|..+..  .+      .|..           
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar--~g~~v~iie~~~~~--------g~~~~~~~--i~------~~~~-----------   54 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKG--------GQLTTTTE--VE------NWPG-----------   54 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTT--------GGGGGCSB--CC------CSTT-----------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCceEEEEeeccc--------ccccccch--hh------hhhc-----------
Confidence            46799999999999999999999  79999999987665        33322111  00      1100           


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                +|.......+.+.+...+.+.++++..+ +|+.+...+  +.+.++..      
T Consensus        55 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~--~~~~v~~~------   99 (190)
T d1trba1          55 --------------------------DPNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN--RPFRLNGD------   99 (190)
T ss_dssp             --------------------------CCSSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSS--SSEEEEES------
T ss_pred             --------------------------cccccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCC--CcEEEEEe------
Confidence                                      0111223445556666677788888765 688887764  66777766      


Q ss_pred             eEEEEcCeEEEccCCC
Q 011610          209 VECIEADYLLIASGSS  224 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~~  224 (481)
                      ...+.++.+|+++|..
T Consensus       100 ~~~~~~~~viva~G~~  115 (190)
T d1trba1         100 NGEYTCDALIIATGAS  115 (190)
T ss_dssp             SCEEEEEEEEECCCEE
T ss_pred             eeeEeeeeeeeeccee
Confidence            4679999999999953

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=8.3e-09  Score=84.18  Aligned_cols=94  Identities=21%  Similarity=0.232  Sum_probs=72.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..|+|||||+.|+-+|..+++  .|.+|+|+|+.. +..                                        .
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~~l~----------------------------------------~   59 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLP----------------------------------------S   59 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSST----------------------------------------T
T ss_pred             CEEEEECCChhhHHHHHHhhc--cccEEEEEeecchhhh----------------------------------------h
Confidence            479999999999999999999  789999999643 210                                        0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              ..+.+.+.+.++++||++++++.|+++..++ ++.+.|++++     +
T Consensus        60 ~d------------------------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~~~~~v~~~~-----g  103 (116)
T d1gesa2          60 FD------------------------------PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGSLTLELED-----G  103 (116)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSCEEEEETT-----S
T ss_pred             cc------------------------------hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CcEEEEEECC-----C
Confidence            00                              0122344455667799999999999998875 4567788876     6


Q ss_pred             EEEEcCeEEEccC
Q 011610          210 ECIEADYLLIASG  222 (481)
Q Consensus       210 ~~i~ad~VIlAtG  222 (481)
                      .++.+|.||+|+|
T Consensus       104 ~~~~~D~vi~a~G  116 (116)
T d1gesa2         104 RSETVDCLIWAIG  116 (116)
T ss_dssp             CEEEESEEEECSC
T ss_pred             CEEEcCEEEEecC
Confidence            7899999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.89  E-value=1.5e-09  Score=98.81  Aligned_cols=39  Identities=28%  Similarity=0.446  Sum_probs=35.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      .+++||++||||||+|+.||+.+++  .|.+|+|+|++.+|
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~--~G~~V~liE~~~~G   40 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQALG   40 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCTT
T ss_pred             CccccCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence            3468999999999999999999999  68999999988776

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.84  E-value=4.8e-09  Score=95.09  Aligned_cols=37  Identities=41%  Similarity=0.474  Sum_probs=34.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      .+|||+||||||+|++||+.+++  .|.+|+|||+..+|
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar--~G~kV~vIEk~~~G   38 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGNLG   38 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCEEEEEecCCCC
Confidence            47999999999999999999999  79999999998887

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.83  E-value=2.1e-08  Score=98.23  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +...++||||||+|++|+.+|.+|++  +|++|+|||++
T Consensus         3 ~~~~~~dvIVVGsG~aG~v~A~rLae--aG~~VlvLEaG   39 (370)
T d3coxa1           3 ADGDRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMG   39 (370)
T ss_dssp             CTTCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            34567999999999999999999999  79999999964

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=2.4e-09  Score=98.57  Aligned_cols=47  Identities=28%  Similarity=0.404  Sum_probs=37.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccC-CCCcEEEEeCCCCCCceEEecCCceeeccCCCcc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVA-PKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD  107 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~-~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~  107 (481)
                      .+|+||||||+|++||+.+++.+ .+++|+|+|++.+|        |.|  .|..+.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~G--------G~c--ln~GciP   49 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIG--------GAA--VLDDCVP   49 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTT--------HHH--HHTSHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCC--------cee--ecccccc
Confidence            58999999999999999988732 45789999998887        667  4555554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.79  E-value=1.6e-08  Score=94.36  Aligned_cols=51  Identities=18%  Similarity=0.202  Sum_probs=39.6

Q ss_pred             HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610          173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ  226 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~  226 (481)
                      ...++.+.++++|+.+...+  +.+.|.+.+ ..+...++.+|.||.|.|.++.
T Consensus       117 ~~~~~~~~~~~~v~~~~~~~--~~v~v~~~~-g~~~~~~~~ad~vi~ADG~~S~  167 (288)
T d3c96a1         117 RLGQQAVRTGLGVERIEERD--GRVLIGARD-GHGKPQALGADVLVGADGIHSA  167 (288)
T ss_dssp             HHCTTSEEESEEEEEEEEET--TEEEEEEEE-TTSCEEEEEESEEEECCCTTCH
T ss_pred             hccCeeeecCcEEEEeeecC--CcEEEEEEc-CCCCeEEEeeceeeccCCccce
Confidence            34688999999999998775  667787775 2233468999999999998763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.79  E-value=6.6e-08  Score=79.02  Aligned_cols=96  Identities=20%  Similarity=0.166  Sum_probs=72.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||+.||-.|..+++  .|.+|+++|+.. +.              .                          .
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~ll--------------~--------------------------~   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFL--------------P--------------------------A   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------------T--------------------------T
T ss_pred             CeEEEECCChHHHHHHHHHHH--cCCceEEEEeecccC--------------C--------------------------c
Confidence            689999999999999999999  799999999543 22              0                          0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              .++.+.+.+.+++.|++++++++|++++.++  +.+.|++.+  .+++
T Consensus        61 ~d------------------------------~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~v~~~~--~~~~  106 (119)
T d3lada2          61 VD------------------------------EQVAKEAQKILTKQGLKILLGARVTGTEVKN--KQVTVKFVD--AEGE  106 (119)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHTTEEEEETCEEEEEEECS--SCEEEEEES--SSEE
T ss_pred             cc------------------------------chhHHHHHHHHHhcCceeecCcEEEEEEEeC--CEEEEEEEE--CCCC
Confidence            00                              1122334455677899999999999999875  566677653  2334


Q ss_pred             EEEEcCeEEEccC
Q 011610          210 ECIEADYLLIASG  222 (481)
Q Consensus       210 ~~i~ad~VIlAtG  222 (481)
                      .++.+|.|++|+|
T Consensus       107 ~~~~~D~vlvAvG  119 (119)
T d3lada2         107 KSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEEESEEEECSC
T ss_pred             EEEECCEEEEeeC
Confidence            6899999999998

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.78  E-value=1.1e-08  Score=96.00  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=32.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS   88 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~   88 (481)
                      .+|+|||||++||+||+.|++  .|++|+|||+ +.+|+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCCCCcC
Confidence            579999999999999999999  7999999995 47774

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=2.4e-09  Score=98.34  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=33.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      .+|||+||||||+|++||+.|++  .|++|+|||+...+
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~--~G~kV~viE~~~~~   38 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFVTPT   38 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGG--GCCCEEEECCCCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCC
Confidence            47999999999999999999999  79999999976554

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.76  E-value=1.2e-08  Score=100.03  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .||||||+|++|+.+|.+|++  +|++|+|||++
T Consensus         3 v~VIVVGsG~aG~v~A~rLae--aG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHH--CcCeEEEEecC
Confidence            599999999999999999999  79999999975

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.75  E-value=1.2e-08  Score=95.30  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      ..+.+||++|||||++|+.+|+.+++  .|.+|+++|+. .+|
T Consensus        38 ~~~k~yDvvVIGgG~aG~~aA~~~a~--~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          38 NDPREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFLG   78 (261)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSS
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCccc
Confidence            34568999999999999999999999  78999999965 555

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=1.2e-08  Score=90.68  Aligned_cols=116  Identities=25%  Similarity=0.344  Sum_probs=75.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+||+||||||+|+.||+.|++  .|++|+|+|+.......   .++..  .....      ...+.            
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar--~g~~v~vie~~~~~~~~---~~~~~--~~~~~------~~~~~------------   58 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIA---PGGQL--TTTTD------VENFP------------   58 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBC---TTCGG--GGCSE------ECCST------------
T ss_pred             ccceEEEECCCHHHHHHHHHHHH--cCCcEEEEEeecccccc---ccccc--ccchh------hhccc------------
Confidence            35899999999999999999999  79999999964322000   00000  00000      00000            


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                    +           +|.......+...+.+.+++.|+++..+ +|.++...+  +.+.+.+.      
T Consensus        59 --------------~-----------~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~--~~~~v~~~------  104 (192)
T d1vdca1          59 --------------G-----------FPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSS--KPFKLFTD------  104 (192)
T ss_dssp             --------------T-----------CTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSS--SSEEEECS------
T ss_pred             --------------c-----------ccccccchHHHHHHHHHHHhhcceeeee-eEEeccccc--CcEEeccc------
Confidence                          0           0111123556666777788899999866 688887664  66777766      


Q ss_pred             eEEEEcCeEEEccCC
Q 011610          209 VECIEADYLLIASGS  223 (481)
Q Consensus       209 ~~~i~ad~VIlAtG~  223 (481)
                      ...+.+|.+++++|.
T Consensus       105 ~~~~~~~~~~~a~g~  119 (192)
T d1vdca1         105 SKAILADAVILAIGA  119 (192)
T ss_dssp             SEEEEEEEEEECCCE
T ss_pred             ceeeeeeeEEEEeee
Confidence            468999999999995

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=8.5e-09  Score=93.48  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      +|||+||||||+|++||..+++  .|.+|+|||++..|
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar--~G~kV~vIEk~~~G   38 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAE--LGARAAVVESHKLG   38 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCEEEEEeccCCC
Confidence            6999999999999999999999  79999999998776

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.70  E-value=1e-07  Score=79.55  Aligned_cols=97  Identities=23%  Similarity=0.298  Sum_probs=71.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+|+|||||+.|+-+|..|++  .|.+|+|+|+. .+..             +.                  +      
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~~~l~-------------~~------------------~------   75 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARVLE-------------RV------------------T------   75 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTT-------------TT------------------S------
T ss_pred             CCEEEEECCchHHHHHHHHHHh--hCcceeeeeecccccc-------------cc------------------c------
Confidence            3689999999999999999999  79999999964 3220             00                  0      


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCe-EEEEEeecccC
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK-FLLKVEKRTMN  207 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~-~~V~~~~~~~~  207 (481)
                        +                              ..+.+.+.+.++++||+++++++|++++...++.. ..|.+++    
T Consensus        76 --~------------------------------~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~----  119 (133)
T d1q1ra2          76 --A------------------------------PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED----  119 (133)
T ss_dssp             --C------------------------------HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT----
T ss_pred             --c------------------------------hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCC----
Confidence              0                              11123334456678999999999999987541233 3567776    


Q ss_pred             ceEEEEcCeEEEccC
Q 011610          208 LVECIEADYLLIASG  222 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG  222 (481)
                       +.++.||.||+|+|
T Consensus       120 -G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         120 -GTRLPADLVIAGIG  133 (133)
T ss_dssp             -SCEEECSEEEECCC
T ss_pred             -CCEEECCEEEEeeC
Confidence             67899999999998

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.70  E-value=2.2e-08  Score=92.32  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=33.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL   87 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g   87 (481)
                      ....+|+|||||++|+++|+.|++  +|.+|+||||..++
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~--~G~~V~vier~~~~   41 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLPE   41 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCTT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence            345699999999999999999999  79999999987655

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.3e-07  Score=76.09  Aligned_cols=98  Identities=21%  Similarity=0.243  Sum_probs=71.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..++|||||+.|+-.|..+++  .|.+|+|+|+. .+.+             .                           
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l~-------------~---------------------------   61 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGA-------------S---------------------------   61 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSS-------------S---------------------------
T ss_pred             CeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccch-------------h---------------------------
Confidence            589999999999999999999  79999999954 3320             0                           


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              .++.+.+.+.+++.||+++++++|++++..+++..+.++..+...+..
T Consensus        62 ~d------------------------------~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~  111 (122)
T d1v59a2          62 MD------------------------------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQ  111 (122)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             hh------------------------------hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCe
Confidence            00                              112234445667789999999999999886523345566655344556


Q ss_pred             EEEEcCeEEEc
Q 011610          210 ECIEADYLLIA  220 (481)
Q Consensus       210 ~~i~ad~VIlA  220 (481)
                      .++.||.|++|
T Consensus       112 ~~ie~D~vlvA  122 (122)
T d1v59a2         112 ENLEAEVLLVA  122 (122)
T ss_dssp             EEEEESEEEEC
T ss_pred             EEEEeCEEEEC
Confidence            78999999987

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.68  E-value=1.2e-07  Score=77.09  Aligned_cols=96  Identities=18%  Similarity=0.143  Sum_probs=70.7

Q ss_pred             CeEEEECCchHHHHHHHHHhcc-CCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTV-APKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~-~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..++|||||+.|+-.|..+++. ..|.+|+++|+.. +.              .                          
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il--------------~--------------------------   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--------------R--------------------------   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--------------T--------------------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc--------------c--------------------------
Confidence            5899999999999998765542 1478999999642 21              0                          


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                      .++                              +++.+.+.+.++++||++++++.|+++...+ ++...+.+++     
T Consensus        59 ~~d------------------------------~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~-~g~~~v~~~~-----  102 (117)
T d1feca2          59 GFD------------------------------SELRKQLTEQLRANGINVRTHENPAKVTKNA-DGTRHVVFES-----  102 (117)
T ss_dssp             TSC------------------------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TSCEEEEETT-----
T ss_pred             ccc------------------------------chhhHHHHHHHhhCcEEEEcCCEEEEEEECC-CCEEEEEECC-----
Confidence            000                              1123344556778899999999999998765 4666788776     


Q ss_pred             eEEEEcCeEEEccC
Q 011610          209 VECIEADYLLIASG  222 (481)
Q Consensus       209 ~~~i~ad~VIlAtG  222 (481)
                      +.++.||.||+|+|
T Consensus       103 g~~i~~D~Vi~a~G  116 (117)
T d1feca2         103 GAEADYDVVMLAIG  116 (117)
T ss_dssp             SCEEEESEEEECSC
T ss_pred             CCEEEcCEEEEecC
Confidence            77899999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.2e-08  Score=80.51  Aligned_cols=96  Identities=19%  Similarity=0.286  Sum_probs=71.3

Q ss_pred             CeEEEECCchHHHHHHHHHhcc--CCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTV--APKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~--~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ..++|||||+.|+-+|..|++.  ..|.+|+++|+.. +.             ..                         
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l-------------~~-------------------------   79 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-------------GK-------------------------   79 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-------------TT-------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC-------------cc-------------------------
Confidence            4899999999999988888641  1478999999542 21             00                         


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~  207 (481)
                       .++                              .++.+.+.+.++++||++++++.|.++..++  +.+.|++++    
T Consensus        80 -~~~------------------------------~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~--~~~~v~l~~----  122 (137)
T d1m6ia2          80 -ILP------------------------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKLLIKLKD----  122 (137)
T ss_dssp             -TSC------------------------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEEEEEETT----
T ss_pred             -cCC------------------------------HHHHHHHHHHHHhCCcEEEeCCEEEEEEecC--CEEEEEECC----
Confidence             000                              1122344556678899999999999998765  778888886    


Q ss_pred             ceEEEEcCeEEEccC
Q 011610          208 LVECIEADYLLIASG  222 (481)
Q Consensus       208 ~~~~i~ad~VIlAtG  222 (481)
                       ++.+.||.||.|+|
T Consensus       123 -G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         123 -GRKVETDHIVAAVG  136 (137)
T ss_dssp             -SCEEEESEEEECCC
T ss_pred             -CCEEECCEEEEeec
Confidence             78899999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.66  E-value=2.4e-07  Score=75.27  Aligned_cols=94  Identities=24%  Similarity=0.302  Sum_probs=69.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||+.|+-+|..+++  .|.+|+|+|+.. +.+                                        .
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~il~----------------------------------------~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILS----------------------------------------G   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSST----------------------------------------T
T ss_pred             CeEEEECCCccceeeeeeecc--cccEEEEEEecceecc----------------------------------------c
Confidence            589999999999999999999  799999999643 220                                        0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              .++.+.+.+.+++.|++++++++|++++..+  +.+.|.+..  ++..
T Consensus        61 ~d------------------------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~--~~~~v~~~~--~g~~  106 (117)
T d1ebda2          61 FE------------------------------KQMAAIIKKRLKKKGVEVVTNALAKGAEERE--DGVTVTYEA--NGET  106 (117)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEE--TTEE
T ss_pred             cc------------------------------chhHHHHHHHHHhcCCEEEcCCEEEEEEEcC--CEEEEEEEe--CCCE
Confidence            00                              1123344556678899999999999998775  556666652  2334


Q ss_pred             EEEEcCeEEEc
Q 011610          210 ECIEADYLLIA  220 (481)
Q Consensus       210 ~~i~ad~VIlA  220 (481)
                      .++.+|.||++
T Consensus       107 ~~i~~D~Vlvs  117 (117)
T d1ebda2         107 KTIDADYVLVT  117 (117)
T ss_dssp             EEEEESEEEEC
T ss_pred             EEEEeEEEEEC
Confidence            68999999974

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.66  E-value=5.9e-08  Score=95.89  Aligned_cols=35  Identities=31%  Similarity=0.594  Sum_probs=31.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.||+||||||++|+..|.+|++. ++.+|+|||++
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG   50 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESG   50 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESS
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCC
Confidence            469999999999999999999983 45899999965

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.65  E-value=1.1e-07  Score=77.97  Aligned_cols=90  Identities=24%  Similarity=0.357  Sum_probs=67.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||+.|+-+|..|++  .|.+|+|+|+.. +..             +                          .
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~~l~-------------~--------------------------~   69 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLMS-------------R--------------------------A   69 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTT-------------T--------------------------T
T ss_pred             CeEEEECcchhHHHHHHHhhc--ccceEEEEeecccccc-------------c--------------------------c
Confidence            689999999999999999999  799999999642 210             0                          0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              ..+.+.+.+.++++||+++++++|+++..    +  .|++++     +
T Consensus        70 ~~------------------------------~~~~~~~~~~l~~~GV~i~~~~~v~~~~~----~--~v~l~d-----g  108 (121)
T d1d7ya2          70 AP------------------------------ATLADFVARYHAAQGVDLRFERSVTGSVD----G--VVLLDD-----G  108 (121)
T ss_dssp             SC------------------------------HHHHHHHHHHHHTTTCEEEESCCEEEEET----T--EEEETT-----S
T ss_pred             CC------------------------------HHHHHHHHHHHHHCCcEEEeCCEEEEEeC----C--EEEECC-----C
Confidence            00                              11223444566788999999999998752    3  255665     6


Q ss_pred             EEEEcCeEEEccC
Q 011610          210 ECIEADYLLIASG  222 (481)
Q Consensus       210 ~~i~ad~VIlAtG  222 (481)
                      .++.||.||+|+|
T Consensus       109 ~~i~~D~vi~a~G  121 (121)
T d1d7ya2         109 TRIAADMVVVGIG  121 (121)
T ss_dssp             CEEECSEEEECSC
T ss_pred             CEEECCEEEEeeC
Confidence            7899999999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.8e-09  Score=95.89  Aligned_cols=59  Identities=27%  Similarity=0.359  Sum_probs=44.0

Q ss_pred             HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      .+++.||+++++++|++|+.++  +  .|++++     +.++.+|.||+|+|+.+....++...|+.+
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~--~--~V~l~d-----G~~i~~d~lViAtG~~~~~~~l~~~~gl~~  150 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRD--N--MVKLND-----GSQITYEKCLIATGGTEPNVELAKTGGLEI  150 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGG--T--EEEETT-----SCEEEEEEEEECCCEEEECCTTHHHHTCCB
T ss_pred             HHHHCCeEEEeCCEEEEeeccC--c--eeeecc-----ceeeccceEEEeeeeecchhhhhhccchhh
Confidence            3457899999999999997654  3  467776     788999999999997654334455556554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.59  E-value=6.7e-07  Score=72.90  Aligned_cols=97  Identities=22%  Similarity=0.249  Sum_probs=68.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..|+|||||+.|+-.|..+++  .|.+|+++|+.. +.+             .   .+            +         
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~~~l~-------------~---~d------------~---------   63 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLKL-------------I---KD------------N---------   63 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTT-------------C---CS------------H---------
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cchhheEeeccchhhc-------------c---cc------------c---------
Confidence            589999999999999999998  789999999542 220             0   00            0         


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE-EEEeecccCc
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL-LKVEKRTMNL  208 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~-V~~~~~~~~~  208 (481)
                                                       .+.+.+.+.+++.|++++++++|++++.++ ++.+. +...  ..+.
T Consensus        64 ---------------------------------~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~-~~~~~~~~~~--~~~~  107 (121)
T d1mo9a2          64 ---------------------------------ETRAYVLDRMKEQGMEIISGSNVTRIEEDA-NGRVQAVVAM--TPNG  107 (121)
T ss_dssp             ---------------------------------HHHHHHHHHHHHTTCEEESSCEEEEEEECT-TSBEEEEEEE--ETTE
T ss_pred             ---------------------------------chhhhhhhhhhccccEEEcCCEEEEEEecC-CceEEEEEEE--eCCC
Confidence                                             012233345567799999999999999875 34432 3222  2233


Q ss_pred             eEEEEcCeEEEccC
Q 011610          209 VECIEADYLLIASG  222 (481)
Q Consensus       209 ~~~i~ad~VIlAtG  222 (481)
                      +.++.||.||+|+|
T Consensus       108 ~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2         108 EMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEECSCEEECCC
T ss_pred             CEEEEcCEEEEEEC
Confidence            57899999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.57  E-value=4.6e-07  Score=73.59  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..|+|||||+.|+-+|..|++  .|.+|+|+|+.. +.+                                        .
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~il~----------------------------------------~   60 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNRILR----------------------------------------K   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSSSCT----------------------------------------T
T ss_pred             CEEEEECCchHHHHHHHHHHh--ccccceeeehhccccc----------------------------------------c
Confidence            589999999999999999998  799999999642 210                                        0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              +.+.+.+.+.+++.||+++++++|++++..+ ++.+.|++.+     +
T Consensus        61 ~d------------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~~v~~~~-----G  104 (117)
T d1onfa2          61 FD------------------------------ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKNLSIHLSD-----G  104 (117)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTCEEEEETT-----S
T ss_pred             cc------------------------------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcC-CCeEEEEECC-----C
Confidence            00                              1123344556677899999999999998775 5667888876     5


Q ss_pred             EEE-EcCeEEEc
Q 011610          210 ECI-EADYLLIA  220 (481)
Q Consensus       210 ~~i-~ad~VIlA  220 (481)
                      ..+ .+|.||+|
T Consensus       105 ~~~~~~D~Vi~A  116 (117)
T d1onfa2         105 RIYEHFDHVIYC  116 (117)
T ss_dssp             CEEEEESEEEEC
T ss_pred             CEEEeCCEEEEe
Confidence            555 46999987

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.56  E-value=9.3e-08  Score=93.54  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=31.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .||+||||+|++|+.+|.+|++  .|.+|+|||++
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae--~g~~VlvLEaG   34 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERG   34 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhh--CCCeEEEEEcc
Confidence            5999999999999999999999  78999999976

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.54  E-value=2.6e-07  Score=76.01  Aligned_cols=97  Identities=16%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      ..++|||||..|+-.|..+++  .|.+|+|+|+. .+.+             .   .+                      
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~--~G~~Vtive~~~~il~-------------~---~d----------------------   66 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDGLMQ-------------G---AD----------------------   66 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSSSST-------------T---SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHhhc--CCCEEEEEEeeccccc-------------c---ch----------------------
Confidence            589999999999999999999  68999999954 3220             0   00                      


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                                                      .++.+.+.+.++++|++++++++|.+++.++  +...|.+.. ..+..
T Consensus        67 --------------------------------~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~--~g~~v~~~~-~~g~~  111 (125)
T d1ojta2          67 --------------------------------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE--DGVYVTFEG-ANAPK  111 (125)
T ss_dssp             --------------------------------HHHHHHHHHHHGGGEEEEECSCEEEEEEEET--TEEEEEEES-SSCCS
T ss_pred             --------------------------------hhHHHHHHHHHHHcCcccccCcEEEEEEEcC--CcEEEEEEe-CCCCe
Confidence                                            1122344455667899999999999999875  556666653 22233


Q ss_pred             EEEEcCeEEEccC
Q 011610          210 ECIEADYLLIASG  222 (481)
Q Consensus       210 ~~i~ad~VIlAtG  222 (481)
                      +.+.||.|++|+|
T Consensus       112 ~~i~~D~vl~A~G  124 (125)
T d1ojta2         112 EPQRYDAVLVAAG  124 (125)
T ss_dssp             SCEEESCEEECCC
T ss_pred             EEEEcCEEEEecC
Confidence            5799999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=1.3e-07  Score=76.77  Aligned_cols=93  Identities=27%  Similarity=0.301  Sum_probs=65.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||+.|+-+|..+++  .|.+|+|+|+. .+.              .                          .
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~~il--------------~--------------------------~   59 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERIL--------------P--------------------------T   59 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------------T--------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHhh--cccceEEEeeecccc--------------c--------------------------c
Confidence            589999999999999999999  68999999964 322              0                          0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                      ++                              .++.+.+.+.++++|++++++++|+++..    +... ...  ..+.+
T Consensus        60 ~d------------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~----~~~~-~~~--~~~~~  102 (115)
T d1lvla2          60 YD------------------------------SELTAPVAESLKKLGIALHLGHSVEGYEN----GCLL-AND--GKGGQ  102 (115)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHHTCEEETTCEEEEEET----TEEE-EEC--SSSCC
T ss_pred             cc------------------------------chhHHHHHHHHHhhcceEEcCcEEEEEcC----CeEE-EEE--cCCCe
Confidence            00                              01223344556677999999999999852    3222 222  12334


Q ss_pred             EEEEcCeEEEccC
Q 011610          210 ECIEADYLLIASG  222 (481)
Q Consensus       210 ~~i~ad~VIlAtG  222 (481)
                      .++.||.||+|+|
T Consensus       103 ~~i~~D~vi~A~G  115 (115)
T d1lvla2         103 LRLEADRVLVAVG  115 (115)
T ss_dssp             CEECCSCEEECCC
T ss_pred             EEEEcCEEEEecC
Confidence            5799999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.51  E-value=5e-07  Score=74.05  Aligned_cols=92  Identities=23%  Similarity=0.325  Sum_probs=66.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ..+|+|||||+.|+-+|..|++  .|.+|+++|+. .+.              ..                         
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~--~g~~Vtlie~~~~~l--------------~~-------------------------   68 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRPL--------------GV-------------------------   68 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTT--------------TT-------------------------
T ss_pred             CCEEEEECChHHHHHHHHHhhc--cceEEEEEEecCccc--------------cc-------------------------
Confidence            4589999999999999999999  79999999964 221              00                         


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                      .++                              ..+.+.+.+.+++.||+++++++|++++.++  ....|.++      
T Consensus        69 ~~d------------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~~~~v~~d------  110 (123)
T d1nhpa2          69 YLD------------------------------KEFTDVLTEEMEANNITIATGETVERYEGDG--RVQKVVTD------  110 (123)
T ss_dssp             TCC------------------------------HHHHHHHHHHHHTTTEEEEESCCEEEEECSS--BCCEEEES------
T ss_pred             ccc------------------------------hhhHHHHHHHhhcCCeEEEeCceEEEEEcCC--CEEEEEeC------
Confidence            000                              1122334455677899999999999998643  43445444      


Q ss_pred             eEEEEcCeEEEc
Q 011610          209 VECIEADYLLIA  220 (481)
Q Consensus       209 ~~~i~ad~VIlA  220 (481)
                      +.++.||.||+|
T Consensus       111 g~~i~~D~vi~a  122 (123)
T d1nhpa2         111 KNAYDADLVVVA  122 (123)
T ss_dssp             SCEEECSEEEEC
T ss_pred             CCEEECCEEEEE
Confidence            678999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.50  E-value=5.3e-07  Score=73.89  Aligned_cols=97  Identities=19%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||..|+-.|..+++  .|.+|+|+|+.. +.             ..   .                       
T Consensus        26 ~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~~~l-------------~~---~-----------------------   64 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIV-------------PT---M-----------------------   64 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSS-------------TT---S-----------------------
T ss_pred             CeEEEEccchHHHHHHHHHHh--cCCeEEEEEEccccC-------------ch---h-----------------------
Confidence            589999999999999999999  689999999643 21             00   0                       


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV  209 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~  209 (481)
                       +                              .++.+.+.+.+++.|++|+++++|.+++..+  +.+.|.+.....+..
T Consensus        65 -d------------------------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  111 (123)
T d1dxla2          65 -D------------------------------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG--DGVKLTVEPSAGGEQ  111 (123)
T ss_dssp             -C------------------------------HHHHHHHHHHHHHSSCCEECSEEEEEEECSS--SSEEEEEEESSSCCC
T ss_pred             -h------------------------------hcchhhhhhhhhcccceEEcCCceEEEEEcc--CeEEEEEEECCCCeE
Confidence             0                              1123344556678899999999999999765  455555543233345


Q ss_pred             EEEEcCeEEEcc
Q 011610          210 ECIEADYLLIAS  221 (481)
Q Consensus       210 ~~i~ad~VIlAt  221 (481)
                      ..+.||.|++|.
T Consensus       112 ~~i~~D~vLvAA  123 (123)
T d1dxla2         112 TIIEADVVLVSA  123 (123)
T ss_dssp             EEEEESEEECCC
T ss_pred             EEEEcCEEEEcC
Confidence            679999999984

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.50  E-value=8.4e-07  Score=71.97  Aligned_cols=94  Identities=16%  Similarity=0.148  Sum_probs=68.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccC-CCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVA-PKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~-~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      .+++|||||+.|+-+|..+...+ .+.+|+|+|+.. +.              .                          
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL--------------~--------------------------   60 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL--------------R--------------------------   60 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS--------------T--------------------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh--------------c--------------------------
Confidence            58999999999999997765421 467899999642 11              0                          


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                      .++                              .++.+.+.+.++++||+++++++|++++..+ ++...|++++     
T Consensus        61 ~~d------------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~-~~~~~v~~~~-----  104 (117)
T d1aoga2          61 GFD------------------------------HTLREELTKQLTANGIQILTKENPAKVELNA-DGSKSVTFES-----  104 (117)
T ss_dssp             TSC------------------------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSCEEEEETT-----
T ss_pred             ccc------------------------------hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcC-CCeEEEEECC-----
Confidence            000                              1122344456678899999999999998765 4667888886     


Q ss_pred             eEEEEcCeEEEc
Q 011610          209 VECIEADYLLIA  220 (481)
Q Consensus       209 ~~~i~ad~VIlA  220 (481)
                      +.++.||.||+|
T Consensus       105 G~~i~~D~Vi~A  116 (117)
T d1aoga2         105 GKKMDFDLVMMA  116 (117)
T ss_dssp             SCEEEESEEEEC
T ss_pred             CcEEEeCEEEEe
Confidence            678999999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.7e-06  Score=70.98  Aligned_cols=98  Identities=17%  Similarity=0.090  Sum_probs=69.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL  129 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (481)
                      .+++|||||+.|+-.|..+++  .|.+|+|+|+.. +.              .                          .
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~~l--------------~--------------------------~   60 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVL--------------R--------------------------S   60 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC--------------T--------------------------T
T ss_pred             CEEEEEcCCccHHHHHHHHhc--CCcEEEEEeeccccc--------------c--------------------------c
Confidence            589999999999999999999  799999999643 21              0                          0


Q ss_pred             CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC--
Q 011610          130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN--  207 (481)
Q Consensus       130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~--  207 (481)
                      ++                              .++.+.+.+.+++.||+++++++|++++..+  +.+.+.......+  
T Consensus        61 ~d------------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~--~g~~v~~~~~~~g~~  108 (125)
T d3grsa2          61 FD------------------------------SMISTNCTEELENAGVEVLKFSQVKEVKKTL--SGLEVSMVTAVPGRL  108 (125)
T ss_dssp             SC------------------------------HHHHHHHHHHHHHTTCEEETTEEEEEEEEET--TEEEEEEEECCTTSC
T ss_pred             hh------------------------------hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEEEccCCcC
Confidence            00                              1112334456677899999999999998875  5555443221111  


Q ss_pred             --ceEEEEcCeEEEccC
Q 011610          208 --LVECIEADYLLIASG  222 (481)
Q Consensus       208 --~~~~i~ad~VIlAtG  222 (481)
                        ....+.+|.||+|+|
T Consensus       109 ~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         109 PVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             CEEEEEEEESEEEECSC
T ss_pred             cCccccccCCEEEEEeC
Confidence              124678999999998

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.48  E-value=8.8e-07  Score=87.39  Aligned_cols=35  Identities=34%  Similarity=0.601  Sum_probs=31.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..||+||||||++|+..|.+|++. ++.+|+|||++
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~-~~~~VLlLEaG   57 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKG   57 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESS
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHC-CCCeEEEEcCC
Confidence            469999999999999999999983 34799999966

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=1.6e-06  Score=70.80  Aligned_cols=100  Identities=15%  Similarity=0.083  Sum_probs=70.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ..++|||||+.|+-.|..+++  .|.+|+|++++.+.+                                        .+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~~~l~----------------------------------------~~   58 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRSILLR----------------------------------------GF   58 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSST----------------------------------------TS
T ss_pred             CeEEEECCCccHHHHHHHHhh--cCCeEEEEEechhhc----------------------------------------cC
Confidence            479999999999999999999  689999999643220                                        00


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC--CCeEEEEEeecccCc
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA--GRKFLLKVEKRTMNL  208 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--~~~~~V~~~~~~~~~  208 (481)
                      +                              +++.+.+.+.+++.||+|++++.|++++..++  +....++......+.
T Consensus        59 D------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  108 (122)
T d1h6va2          59 D------------------------------QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEE  108 (122)
T ss_dssp             C------------------------------HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCE
T ss_pred             C------------------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCc
Confidence            0                              11234455667788999999999999975321  234556555422333


Q ss_pred             eEEEEcCeEEEccC
Q 011610          209 VECIEADYLLIASG  222 (481)
Q Consensus       209 ~~~i~ad~VIlAtG  222 (481)
                      .....+|.|++|+|
T Consensus       109 ~~~~~~D~vl~AiG  122 (122)
T d1h6va2         109 TIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEESEEECCCC
T ss_pred             EEEEECCEEEEEeC
Confidence            45678999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.46  E-value=5.9e-07  Score=73.50  Aligned_cols=88  Identities=18%  Similarity=0.244  Sum_probs=64.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      .+++|||||+.|+-+|..|++  .|.+|+|+|+....             ..   .+            +          
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~l-------------~~---~d------------~----------   72 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMF-------------LG---LD------------E----------   72 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSCC-------------TT---CC------------H----------
T ss_pred             CcEEEECCcHHHHHHHHHhhc--ccceEEEEeccccc-------------cC---CC------------H----------
Confidence            589999999999999999999  79999999964311             00   01            0          


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                         +                             +.+.+.+.+++.||+++++++|.++..    +.  +.++      +.
T Consensus        73 ---~-----------------------------~~~~~~~~l~~~GV~~~~~~~v~~~~~----~~--v~~~------~~  108 (122)
T d1xhca2          73 ---E-----------------------------LSNMIKDMLEETGVKFFLNSELLEANE----EG--VLTN------SG  108 (122)
T ss_dssp             ---H-----------------------------HHHHHHHHHHHTTEEEECSCCEEEECS----SE--EEET------TE
T ss_pred             ---H-----------------------------HHHHHHHHHHHCCcEEEeCCEEEEEeC----CE--EEeC------CC
Confidence               1                             112233456678999999999999853    22  3344      57


Q ss_pred             EEEcCeEEEccC
Q 011610          211 CIEADYLLIASG  222 (481)
Q Consensus       211 ~i~ad~VIlAtG  222 (481)
                      .+.+|.||+|+|
T Consensus       109 ~i~~D~vi~a~G  120 (122)
T d1xhca2         109 FIEGKVKICAIG  120 (122)
T ss_dssp             EEECSCEEEECC
T ss_pred             EEECCEEEEEEE
Confidence            899999999998

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=2.9e-08  Score=90.41  Aligned_cols=38  Identities=34%  Similarity=0.477  Sum_probs=34.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      .++|||+||||||||++||+.|++  .|.+|+|||+. .+|
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~--~G~kV~lie~~~~~G   41 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKLG   41 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCcc
Confidence            467999999999999999999999  79999999954 555

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.44  E-value=5.6e-08  Score=87.94  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +++|||+||||||||++||+.|++  .|++|+|||+..
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar--~G~~V~viE~~~   36 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYK   36 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCB
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccc
Confidence            368999999999999999999999  789999999764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.44  E-value=4.4e-08  Score=96.65  Aligned_cols=171  Identities=15%  Similarity=0.151  Sum_probs=87.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhcc----CCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTV----APKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR  123 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~----~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~  123 (481)
                      ++||||||||||||++||+.||+.    ..|++|+||||. .+|.+++. | +.+   .....+  ++...+....... 
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~-G-gvl---~~~~l~--~l~p~~~~~~~~~-  102 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS-G-ACL---DPRAFE--ELFPDWKEKGAPL-  102 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCC-C-CEE---CTHHHH--HHCTTHHHHTCCC-
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccc-c-ccc---cHHHHH--HHccchhhhcccc-
Confidence            469999999999999999999861    269999999965 67755432 1 111   000000  0000000000000 


Q ss_pred             hhHHhcCChHHHHHHHHhcC---Ccceee---cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE
Q 011610          124 GSFFSLHGPMDTMSWFSDHG---VELKTE---DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF  197 (481)
Q Consensus       124 ~~~l~~~~~~~~~~~~~~~G---i~~~~~---~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~  197 (481)
                          ......+...+....+   +.....   .....  .......+...+.+.++..|+++..+..+.++..++ ++.+
T Consensus       103 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~-~g~~  175 (380)
T d2gmha1         103 ----NTPVTEDRFGILTEKYRIPVPILPGLPMNNHGN--YVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHE-DGSV  175 (380)
T ss_dssp             ----CEECCEEEEEEECSSCEEECCCCTTSTTCCTTC--EECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECT-TSSE
T ss_pred             ----ccceecceEEEeeccccccccccCchhcccccc--eeehhhHHHHHHHHHHhhccceeeeecceeeeeecc-CCce
Confidence                0000000000000000   000000   00000  012456778889999999999999999999998865 3333


Q ss_pred             -EEEEeec---cc-------CceEEEEcCeEEEccCCChhH-HHHHHHc
Q 011610          198 -LLKVEKR---TM-------NLVECIEADYLLIASGSSQQG-HRLAAQL  234 (481)
Q Consensus       198 -~V~~~~~---~~-------~~~~~i~ad~VIlAtG~~g~g-~~la~~~  234 (481)
                       .+.+...   ..       .......++..+++.|..+.- ..+....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~  224 (380)
T d2gmha1         176 KGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF  224 (380)
T ss_dssp             EEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHT
T ss_pred             eecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhhh
Confidence             2222110   00       012346789999999976543 3444443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=8.2e-08  Score=91.24  Aligned_cols=39  Identities=15%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLS   88 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~   88 (481)
                      .+..+|+|||||++||+||+.|++  .|++|+||| ++.+|+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~--~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGG   42 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCcc
Confidence            356799999999999999999999  799999999 557874

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.40  E-value=1.4e-06  Score=77.24  Aligned_cols=114  Identities=15%  Similarity=0.138  Sum_probs=70.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH  130 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (481)
                      ++|+|||||++|+.+|..|++.+++.+|+++|+...-             ....+..+ .+.......            
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~-------------~~~~~~~~-~~l~~~~~~------------   54 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI-------------SFLSAGMQ-LYLEGKVKD------------   54 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS-------------SBCGGGHH-HHHTTSSCC------------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc-------------cccccCcc-hhhcccccc------------
Confidence            4799999999999999999987678899999975321             01000000 000000000            


Q ss_pred             ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610          131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE  210 (481)
Q Consensus       131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~  210 (481)
                                        .  ..+.          ....+.+++.|++++++++|++++.++  +.+.++.  ...+...
T Consensus        55 ------------------~--~~~~----------~~~~~~l~~~gi~v~~~~~V~~i~~~~--~~v~~~~--~~~g~~~  100 (198)
T d1nhpa1          55 ------------------V--NSVR----------YMTGEKMESRGVNVFSNTEITAIQPKE--HQVTVKD--LVSGEER  100 (198)
T ss_dssp             ------------------G--GGSB----------SCCHHHHHHTTCEEEETEEEEEEETTT--TEEEEEE--TTTCCEE
T ss_pred             ------------------h--HHHH----------HhhHHHHHHCCcEEEEeeceeeEeecc--ccceeee--ccccccc
Confidence                              0  0000          001124456799999999999998764  5444432  2334456


Q ss_pred             EEEcCeEEEccCCC
Q 011610          211 CIEADYLLIASGSS  224 (481)
Q Consensus       211 ~i~ad~VIlAtG~~  224 (481)
                      .+.+|.+|+|+|+.
T Consensus       101 ~~~~D~li~a~G~~  114 (198)
T d1nhpa1         101 VENYDKLIISPGAV  114 (198)
T ss_dssp             EEECSEEEECCCEE
T ss_pred             ccccceeeEeecce
Confidence            78999999999964

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.40  E-value=7.9e-07  Score=86.42  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ....||+||||+|++|+.+|..|++  . .+|+|||++.
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae--~-~kVLvLEaG~   58 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSE--K-YKVLVLERGS   58 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTT--T-SCEEEECSSB
T ss_pred             ccCCccEEEECccHHHHHHHHHhcC--C-CCEEEEecCC
Confidence            3346999999999999999999998  4 8999999764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.40  E-value=5.5e-08  Score=88.72  Aligned_cols=38  Identities=37%  Similarity=0.448  Sum_probs=34.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PL   87 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g   87 (481)
                      +.+|||+||||||+|++||+.|++  .|++|+|||+.. +|
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~~~G   42 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLG   42 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCCCC
Confidence            457999999999999999999999  799999999764 44

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=7.9e-08  Score=91.54  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=33.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g   87 (481)
                      ++||+|||||++||+||+.|++  .|.+|+|+| ++.+|
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~--~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHh--CCCcEEEEECCCCcc
Confidence            5899999999999999999998  689999999 56777

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.31  E-value=1.9e-07  Score=85.20  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=31.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC-CCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG-KPLS   88 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~-~~g~   88 (481)
                      .||+|||||++||+||+.|++  .|+ +|+|||+. .+|+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~--~G~~~V~vlE~~~~~GG   38 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIGG   38 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHh--CCCCcEEEEECCCCCCc
Confidence            489999999999999999999  786 69999964 6763

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=1.3e-06  Score=83.17  Aligned_cols=113  Identities=18%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF  127 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (481)
                      ..+||+||||||+|++||+.|+++.+|++|+|+|+. .+|        |.+....  .        .+.   ....    
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~--~--------~~~---~~~~----  103 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG--------GGSWLGG--Q--------LFS---AMVM----  103 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC--------TTTTCCG--G--------GCC---CEEE----
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc--------ceeEecC--E--------eCC---HHHH----
Confidence            468999999999999999999974469999999965 565        3221111  0        010   0110    


Q ss_pred             hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610          128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN  192 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~  192 (481)
                       .   .....++.++|+.+.....+..+  ......+.......+...|+++.....+..+....
T Consensus       104 -~---~~~~~~~~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  162 (311)
T d2gjca1         104 -R---KPAHLFLQELEIPYEDEGDYVVV--KHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRP  162 (311)
T ss_dssp             -E---TTTHHHHHHTTCCCEECSSEEEE--SCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECC
T ss_pred             -H---hHHHHHHHhCCcEEEEeccccEE--EeeeeeechhhhhhhccCCCEEecccccceeEecC
Confidence             0   11223456778877655433333  22333333444556667899999888888776653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=4.1e-07  Score=79.44  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=30.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .|||+||||||+|++||+.+++  .|++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar--~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--cCCeEEEEEEe
Confidence            3899999999999999999999  79999999964

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.12  E-value=6.4e-07  Score=86.93  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +++|||||||+|++|+++|..|++  +|++|+|||++
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~--~G~kVlvLEaG   36 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIG   36 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CCcccEEEECcCHHHHHHHHHHhh--CCCeEEEEecC
Confidence            578999999999999999999999  79999999975

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.09  E-value=1.2e-06  Score=83.81  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=32.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g   87 (481)
                      +.+|+|||||++||+||+.|++  .|++|+|+|+ +.+|
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k--~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--CCCCEEEEECCCCCc
Confidence            4689999999999999999999  7899999995 5777

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.03  E-value=1.9e-06  Score=78.13  Aligned_cols=37  Identities=32%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP   86 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~   86 (481)
                      +++|||+||||||||++||+.+++  .|. +|+|+|+...
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~--~g~k~V~iie~~~~   38 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAAT--LYKKRVAVIDVQMV   38 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHH--TSCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEeecc
Confidence            368999999999999999999998  454 6889997643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.97  E-value=8.4e-06  Score=69.64  Aligned_cols=54  Identities=19%  Similarity=0.318  Sum_probs=38.6

Q ss_pred             HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610          173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI  238 (481)
Q Consensus       173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i  238 (481)
                      ++.++++++++.|+.+....  .  .+..+      +.++.+|.+|+|+|..+.  .+.+..|++.
T Consensus        63 ~~~~v~~~~~~~v~~i~~~~--~--~~~~~------~~~i~~D~li~a~G~~~~--~~~~~~gl~~  116 (167)
T d1xhca1          63 RKRGIEIRLAEEAKLIDRGR--K--VVITE------KGEVPYDTLVLATGAPNV--DLARRSGIHT  116 (167)
T ss_dssp             HHHTEEEECSCCEEEEETTT--T--EEEES------SCEEECSEEEECCCEECC--HHHHHTTCCB
T ss_pred             Hhccceeeeecccccccccc--c--ccccc------ccccccceeEEEEEecCC--chhhhcCcee
Confidence            34589999999999986432  2  23333      467999999999997653  4667777654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.97  E-value=1.3e-06  Score=79.81  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=31.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP   86 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~   86 (481)
                      .+|||+||||||||++||+.+++  .|. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~--~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAAS--LHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH--HHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEEecc
Confidence            67999999999999999999998  454 6999996643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.96  E-value=1.4e-06  Score=83.81  Aligned_cols=36  Identities=36%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhcc---CCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTV---APKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~---~~g~~V~llE~~   84 (481)
                      ..|||+||||||+||++|..|++.   ..|++|+|||+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~   44 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   44 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCC
Confidence            469999999999999999999731   169999999954

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.92  E-value=5.1e-06  Score=75.55  Aligned_cols=40  Identities=20%  Similarity=0.279  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      +.....+|+||||||+|++||..|++  .|++|+|+|+. .+|
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIG   85 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTT
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHH--hccceeeEeeccccC
Confidence            34466899999999999999999999  79999999954 565

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.87  E-value=5.5e-06  Score=72.59  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~   85 (481)
                      ..+|+|||||++||+||+.|++  .|+ +|+|+|+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~--~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLAR--LGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHH--CCCCeEEEEEecC
Confidence            4689999999999999999999  788 499999653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=5.3e-06  Score=75.02  Aligned_cols=37  Identities=35%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      .+|+|||||||||+||..|++.+.+++|+|+|+. .+|
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4899999999999999999875568899999965 555

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=3.8e-06  Score=76.02  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccC-----CCCcEEEEeCC-CCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVA-----PKLNVVIIEKG-KPL   87 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~-----~g~~V~llE~~-~~g   87 (481)
                      ++|+|||||||||+||+.|++++     .+++|+|+|+. .+|
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            68999999999999999999831     23689999965 666

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.59  E-value=0.00014  Score=62.75  Aligned_cols=43  Identities=12%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610          174 HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ  225 (481)
Q Consensus       174 ~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g  225 (481)
                      ..+++++.+++|.++..+.  .  .+.+.+     ++++.+|.||+|+|..+
T Consensus        67 ~~~i~~~~~~~v~~i~~~~--~--~~~~~~-----g~~~~~D~vi~a~G~~p  109 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQA--H--TVALSD-----GRTLPYGTLVLATGAAP  109 (183)
T ss_dssp             STTCEEEETCCEEEEETTT--T--EEEETT-----SCEEECSEEEECCCEEE
T ss_pred             cCCeEEEEecccccccccc--c--eeEecC-----CcEeeeeeEEEEEEEEc
Confidence            3579999999999997643  2  455665     67899999999999644

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.18  E-value=2.3e-05  Score=70.72  Aligned_cols=30  Identities=23%  Similarity=0.252  Sum_probs=25.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      ++|+|||||++||++|++|++  +|.+|+++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~--~G~~v~v~e   30 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHE--RYHSVLQPL   30 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HHTTTSSSC
T ss_pred             CEEEEECchHHHHHHHHHHHH--CCCCceEEe
Confidence            479999999999999999999  677655554

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.08  E-value=0.00021  Score=60.87  Aligned_cols=35  Identities=37%  Similarity=0.582  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      .+|+|||||++|+.+|..|++.++..+|+|+|+..
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            48999999999999999999966667899999653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0035  Score=52.48  Aligned_cols=50  Identities=16%  Similarity=0.170  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          165 IDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       165 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      .......+++.||+++.++.|..+..    +.+.+...    +....+.||.||+|+|
T Consensus       111 ~~~~~~~~~~~gv~~~~~~~v~~i~~----~gv~~~~~----g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         111 GWIHRTTLLSRGVKMIPGVSYQKIDD----DGLHVVIN----GETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHHHTTCEEECSCEEEEEET----TEEEEEET----TEEEEECCSEEEECCC
T ss_pred             hHHHHHHHhhCCeEEEeeeEEEEEcC----CCCEEecC----CeEEEEECCEEEECCC
Confidence            34456677889999999999999863    33434332    2245799999999998

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.73  E-value=0.018  Score=47.55  Aligned_cols=33  Identities=15%  Similarity=0.008  Sum_probs=28.4

Q ss_pred             CCeEEEE--CCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVV--GGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvII--GgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...|+|+  |||..|+.+|-.|++  .|.+|+|+|+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~--~G~~Vtlv~~~   73 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGV   73 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCceEEEecCCChHHHHHHHHHHH--cCCeEEEEecC
Confidence            3466666  999999999999999  79999999964

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.34  E-value=0.03  Score=46.36  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=26.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~   83 (481)
                      ..+|+|||||-+|+=+|..|.+  .|.+ |+++.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r--~GA~~V~vi~r   77 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALR--CGARRVFLVFR   77 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECS
T ss_pred             CCEEEEECCChhHHHHHHHHHH--cCCcceeEEEe
Confidence            4589999999999999999988  5654 777764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.063  Score=42.66  Aligned_cols=100  Identities=18%  Similarity=0.313  Sum_probs=66.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS  128 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (481)
                      ...+|+|||||-+.+-.|..|++  -..+|+++-|....+                             ..+.       
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~~-----------------------------~~~~-------   67 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGFR-----------------------------AEKI-------   67 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSCC-----------------------------CCHH-------
T ss_pred             CCCEEEEECCCHHHHHHHHHHhh--cCCcEEEEeeccccc-----------------------------chhH-------
Confidence            34699999999999999999998  566788776432110                             0000       


Q ss_pred             cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610          129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL  208 (481)
Q Consensus       129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~  208 (481)
                                                         ..+.+.+.....++.+++++++.+|.-++ ...-.|++.+..++.
T Consensus        68 -----------------------------------~~~~~~~~~~~~~i~~~~~~~v~~i~G~~-~~v~~v~l~~~~~~e  111 (126)
T d1trba2          68 -----------------------------------LIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSD  111 (126)
T ss_dssp             -----------------------------------HHHHHHHHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCC
T ss_pred             -----------------------------------HHHHHHHhhcccceeEecceEEEEEECCC-CceEEEEEEECCCCc
Confidence                                               11222233345578899999999998764 234467776532322


Q ss_pred             -eEEEEcCeEEEccC
Q 011610          209 -VECIEADYLLIASG  222 (481)
Q Consensus       209 -~~~i~ad~VIlAtG  222 (481)
                       .+++.+|-|+++.|
T Consensus       112 ~~~~l~~dgvFv~iG  126 (126)
T d1trba2         112 NIESLDVAGLFVAIG  126 (126)
T ss_dssp             CCEEEECSEEEECSC
T ss_pred             eEEEEECCEEEEEeC
Confidence             35799999999876

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.058  Score=42.90  Aligned_cols=46  Identities=17%  Similarity=0.185  Sum_probs=35.7

Q ss_pred             CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610          176 GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG  222 (481)
Q Consensus       176 Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG  222 (481)
                      +++++++++|.++.-++ +..-.|++.+..++...++.+|.|.++-|
T Consensus        80 ~I~v~~~~~v~~i~G~~-~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          80 NVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             TEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ceeEEcCcceEEEEccc-cceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            58999999999998764 34456777664455567899999999876

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.94  E-value=0.00095  Score=60.99  Aligned_cols=37  Identities=32%  Similarity=0.459  Sum_probs=31.9

Q ss_pred             cCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610          430 KIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN  472 (481)
Q Consensus       430 k~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~  472 (481)
                      +.+||||+|||+      +||+++++|+.+|+.|++.+.++..
T Consensus       334 t~~pglf~aGd~------~~g~~~~~A~~~G~~aA~~i~~~L~  370 (373)
T d1seza1         334 KNLPGLFYAGNH------RGGLSVGKALSSGCNAADLVISYLE  370 (373)
T ss_dssp             HHSTTEEECCSS------SSCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEecC------CCchhHHHHHHHHHHHHHHHHHHHh
Confidence            467999999954      5788999999999999999988754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.93  E-value=0.0022  Score=54.59  Aligned_cols=32  Identities=28%  Similarity=0.264  Sum_probs=28.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      .-||+|||||++|+-+|..|++  .|.+|+|++.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~--~g~~v~v~~~   34 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRA--SGWEGNIRLV   34 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHH--cCCceEEEEe
Confidence            3589999999999999999999  6788888873

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.83  E-value=0.0038  Score=53.19  Aligned_cols=32  Identities=19%  Similarity=0.098  Sum_probs=29.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|+|||+|..|+..|..|++  .|++|.+++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCEEEEEECC
Confidence            579999999999999999999  79999999975

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0058  Score=46.18  Aligned_cols=32  Identities=13%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ...|+|+|.|.+|+++|..|++  .|.+|.+.|.
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~   36 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDT   36 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHH--TTCCCEEEES
T ss_pred             CCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeC
Confidence            4579999999999999999999  7999999994

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.52  E-value=0.0051  Score=51.85  Aligned_cols=34  Identities=9%  Similarity=0.072  Sum_probs=30.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ...|+|||+|-.|..+|..|++  .|++|+|+|++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCh
Confidence            3589999999999999999999  789999999763

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0064  Score=50.78  Aligned_cols=33  Identities=18%  Similarity=0.007  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      ++|+|||+|..|...|..|++  .|++|++++|..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCK--QGHEVQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHH--CCCceEEEEcCH
Confidence            579999999999999999999  799999999753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.92  E-value=0.013  Score=47.23  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.|+|+|+|..|...|..|.+  .|++|+++|++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d   32 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDID   32 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCCcceecCC
Confidence            479999999999999999998  78999999975

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.39  E-value=0.0081  Score=52.44  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=27.3

Q ss_pred             ccCCCCeEEEEEEeecccCcchHH-HHHHHHHHHHHHHHHh
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFN-FQNAWSGGYIAGTSIG  468 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGyn-l~~A~~sG~~AG~~aa  468 (481)
                      -+.+||+|+||   |+   |||.. .++|...|++|+++++
T Consensus       180 ~T~~~gvyA~G---Dv---~~~~~~~~~A~~~g~~aa~~i~  214 (223)
T d1ebda1         180 RTSVPNIFAIG---DI---VPGPALAHKASYEGKVAAEAIA  214 (223)
T ss_dssp             BCSSTTEEECG---GG---SSSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEe---cc---CCCcccHHHHHHHHHHHHHHHc
Confidence            46899999999   55   45554 5789999999998885

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.19  E-value=0.026  Score=47.27  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|+|||+|.+|+.|+..+.+  -|.+|.++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCc
Confidence            34799999999999999999999  68999999954

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.023  Score=48.95  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      -..|.|||+|..|...|..+++  .|++|+++|.+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~   36 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQT   36 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHh--CCCcEEEEECC
Confidence            3589999999999999999998  79999999965

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.15  E-value=0.014  Score=51.36  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             cccCCCCeEEEEEEeecccCcchH-HHHHHHHHHHHHHHHHhH
Q 011610          428 ESKIHPRLFFAGEVLNVDGVTGGF-NFQNAWSGGYIAGTSIGK  469 (481)
Q Consensus       428 esk~~~gLy~~GE~ldv~g~~GGy-nl~~A~~sG~~AG~~aa~  469 (481)
                      ..+++||+|+||   ||.   |+. -.++|...|++|+.+++.
T Consensus       187 ~~TsvpgVyAaG---Dv~---~~~~l~~~A~~eG~~Aa~~i~G  223 (229)
T d1ojta1         187 MRTNVPHIYAIG---DIV---GQPMLAHKAVHEGHVAAENCAG  223 (229)
T ss_dssp             SBCSSTTEEECG---GGT---CSSCCHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCCEEEEE---ecC---CCcchHHHHHHHHHHHHHHHcC
Confidence            347899999999   664   444 457999999999988853

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.05  E-value=0.021  Score=48.54  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|+|||+|.+|+.||..+.+  -|.+|.++|..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~--lGA~V~v~D~~   61 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKR--LGAVVMATDVR   61 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CcEEEEEcCcHHHHHHHHHHHH--cCCEEEEEecc
Confidence            3699999999999999999998  68999999943

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.90  E-value=0.027  Score=48.19  Aligned_cols=33  Identities=15%  Similarity=0.170  Sum_probs=29.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      -..|.|||+|..|...|..+++  .|++|+++|.+
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~   36 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDIN   36 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECC
Confidence            4579999999999999999998  79999999964

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.80  E-value=0.033  Score=45.70  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.+.+|.|||+|-.|.++|+.|+.++-..+++|+|.+
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            4567999999999999999999984323579999954

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.60  E-value=0.019  Score=49.34  Aligned_cols=33  Identities=24%  Similarity=0.171  Sum_probs=29.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.+|+|||+|..|.+.|..|++  .|.+|.|+.++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~--~g~~V~l~~r~   39 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSK--KCREVCVWHMN   39 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT--TEEEEEEECSC
T ss_pred             eceEEEECCCHHHHHHHHHHHH--cCCeEEEEEec
Confidence            4579999999999999999999  67889888754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.48  E-value=0.026  Score=48.88  Aligned_cols=32  Identities=16%  Similarity=0.104  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.|.|||.|-.|+..|..+|+  .|++|+.+|.+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~--~g~~V~g~D~n   32 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSA--RGHEVIGVDVS   32 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEECCCHhHHHHHHHHHh--CCCcEEEEeCC
Confidence            469999999999999999999  79999999965

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.47  E-value=0.031  Score=44.70  Aligned_cols=31  Identities=16%  Similarity=0.125  Sum_probs=28.8

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +++|||+|..|...|-.|.+  .|.+|+++|.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d   32 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHR--MGHEVLAVDIN   32 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCCCEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCeEEEecCc
Confidence            68999999999999999999  79999999965

>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Topoisomerase VI-B subunit middle domain
domain: Topoisomerase VI-B subunit middle domain
species: Archaeon Sulfolobus shibatae [TaxId: 2286]

Probab=93.16  E-value=0.038  Score=40.04  Aligned_cols=41  Identities=12%  Similarity=0.158  Sum_probs=36.4

Q ss_pred             chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCe
Q 011610          358 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCT  398 (481)
Q Consensus       358 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~  398 (481)
                      .+-..++.++|.+++|+|.+++++|+.++...|++.++++.
T Consensus        36 GvGn~~a~Eil~~agi~P~~~~~~L~~~e~~~L~~air~~~   76 (78)
T d2hkja1          36 SIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYE   76 (78)
T ss_dssp             SCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHCC
T ss_pred             ccCHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHHhhhh
Confidence            45577889999999999999999999999999999988753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.66  E-value=0.04  Score=46.78  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=27.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ++|.|||+|..|.+.|..|++  .|.+|.+..+
T Consensus         1 MkI~ViGaG~~GtalA~~la~--~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVD--NGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH--HCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCEEEEEEe
Confidence            579999999999999999998  5788988754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.38  E-value=0.072  Score=43.93  Aligned_cols=37  Identities=14%  Similarity=0.146  Sum_probs=29.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+.+|.|||+|..|.++|+.|+... -.+++|+|.+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~-~~el~L~D~~   40 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRE-LADVVLYDVV   40 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHT-CCEEEEECSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCC-CceEEEEEec
Confidence            445789999999999999999988742 2479999943

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.16  E-value=0.053  Score=44.36  Aligned_cols=32  Identities=13%  Similarity=0.430  Sum_probs=29.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      ....|+|||||..|+.-|..|.+  .|.+|+|+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~--~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEe
Confidence            45799999999999999999999  799999996

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.11  E-value=0.069  Score=44.25  Aligned_cols=32  Identities=19%  Similarity=0.090  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||.|..|.+.|..|++  .|++|+++|++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHH--CCCEEEEEECC
Confidence            469999999999999999998  79999999965

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.48  E-value=0.085  Score=40.85  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=29.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ....|+|||+|..|..-|..|.+  .|.+|++++.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~   43 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNAL   43 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence            35799999999999999999999  7899999984

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.45  E-value=0.04  Score=48.61  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEEeecccCcchHHH-HHHHHHHHHHHHHHh
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFNF-QNAWSGGYIAGTSIG  468 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGynl-~~A~~sG~~AG~~aa  468 (481)
                      .+.+||+|+||   ||.|   +.+| +.|...|++|+.++.
T Consensus       191 ~T~~~gIyA~G---Dv~~---~~~l~~~A~~~g~~aa~~~~  225 (233)
T d1xdia1         191 RTLATGIYAAG---DCTG---LLPLASVAAMQGRIAMYHAL  225 (233)
T ss_dssp             BCSSTTEEECS---GGGT---SCSCHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCEEEEE---EeCC---CchhHHHHHHHHHHHHHHHc
Confidence            46899999999   6543   4454 578888888888875

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.28  E-value=0.041  Score=46.13  Aligned_cols=49  Identities=12%  Similarity=0.177  Sum_probs=36.6

Q ss_pred             CCCCCCCCCcccccccCCCCeEEEEEEeecccCcchH-----HHHHHHHHHHHHHHHHh
Q 011610          415 GGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGF-----NFQNAWSGGYIAGTSIG  468 (481)
Q Consensus       415 GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGy-----nl~~A~~sG~~AG~~aa  468 (481)
                      ||+.++    .+|+ +.+|++|++|++.......+|.     ..+.|...|+.|+++++
T Consensus       130 ~~i~Vd----~~~~-ts~~~vya~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~  183 (185)
T d1q1ra1         130 NGIVIN----EHMQ-TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILC  183 (185)
T ss_dssp             SSEECC----TTSB-CSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             CccccC----Cccc-cchhhhhcchhhhccccccCCcccchhhHHHHHHHHHHHHHHcc
Confidence            677654    3566 4789999999988776655443     46889999999988764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=91.24  E-value=0.18  Score=41.61  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=29.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....+|.|||+|..|.++|+.|+.++---+++|+|.+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3457999999999999999999984222369999954

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.17  E-value=0.092  Score=44.59  Aligned_cols=53  Identities=25%  Similarity=0.348  Sum_probs=36.6

Q ss_pred             CCCCCCC-----CCcccccccCCCCeEEEEEEeecccCcchH-HHHHHHHHHHHHHHHHhHHhhH
Q 011610          415 GGVPLSE-----ISLNTMESKIHPRLFFAGEVLNVDGVTGGF-NFQNAWSGGYIAGTSIGKLSND  473 (481)
Q Consensus       415 GGv~~~e-----i~~~t~esk~~~gLy~~GE~ldv~g~~GGy-nl~~A~~sG~~AG~~aa~~~~~  473 (481)
                      +|+.+++     +++.+| .+.+||+|+||   |+.+..  | ..-+|..+|..|+.+|.+|..+
T Consensus       133 ~~veld~~G~i~~~~~~~-~Ts~~GV~a~G---Dv~~~~--~r~~v~A~g~G~~aA~~~~~yl~~  191 (192)
T d1vdca1         133 GGVELDSDGYVVTKPGTT-QTSVPGVFAAG---DVQDKK--YRQAITAAGTGCMAALDAEHYLQE  191 (192)
T ss_dssp             TSSCBCTTSCBCCCTTSC-BCSSTTEEECG---GGGCSS--CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeecCCCeEEeCCCce-EecCCCEEEee---ecCCcc--cceEEEEEechHHHHHHHHHHHhh
Confidence            3555554     233343 67899999999   664422  2 3577888999999999988754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.04  E-value=0.15  Score=41.38  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             CCCCeEEEEC-CchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610           48 SSEELLVVVG-GGAAGVYGAIRAKTVAPKLNVVIIEKGK   85 (481)
Q Consensus        48 ~~~~DVvIIG-gG~aGl~aA~~la~~~~g~~V~llE~~~   85 (481)
                      +....|.||| .|..|.+.|..|.+  .|++|.++|+..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~--~G~~V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRA--SGYPISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHH--cCCCcEeccccc
Confidence            3567999999 69999999999999  799999999653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.00  E-value=0.11  Score=43.47  Aligned_cols=32  Identities=22%  Similarity=0.229  Sum_probs=28.6

Q ss_pred             CeEEEE-CCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVV-GGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvII-GgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|+|| |+|..|.+.|..|++  .|++|+|..|+
T Consensus         1 Mki~vigGaG~iG~alA~~la~--~G~~V~l~~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLAT--LGHEIVVGSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence            468999 669999999999999  79999999975

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.57  E-value=0.12  Score=42.85  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=27.4

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      -.|+|+|+|+.|++++..++.  .|.+|+++|++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~   59 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARS   59 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEEcccccchhhHhhHhh--hcccccccchH
Confidence            379999999999999877766  68999999954

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.23  Score=38.24  Aligned_cols=34  Identities=18%  Similarity=0.347  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..++|.|+|||--|.|.|..+.+  -|++|.++|.+
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~--lG~~v~v~d~~   43 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQR--LGVEVIAVDRY   43 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence            45689999999999999999998  69999999943

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.39  E-value=0.058  Score=48.38  Aligned_cols=36  Identities=19%  Similarity=0.386  Sum_probs=27.6

Q ss_pred             cccccCCCCeEEEEEEeecccCcchH-HHHHHHHHHHHHHHHHh
Q 011610          426 TMESKIHPRLFFAGEVLNVDGVTGGF-NFQNAWSGGYIAGTSIG  468 (481)
Q Consensus       426 t~esk~~~gLy~~GE~ldv~g~~GGy-nl~~A~~sG~~AG~~aa  468 (481)
                      .|| +.+||+|+||   |+   +||. ..++|...|++|+.++.
T Consensus       218 ~~~-Ts~~~IyA~G---Dv---~~~~~l~~~A~~~G~~aa~~i~  254 (261)
T d1mo9a1         218 YLQ-TSVPNVYAVG---DL---IGGPMEMFKARKSGCYAARNVM  254 (261)
T ss_dssp             TSB-CSSTTEEECG---GG---GCSSCSHHHHHHHHHHHHHHHT
T ss_pred             Ccc-cCCCCEEEEE---Ee---CCCcccHHHHHHHHHHHHHHHC
Confidence            444 6799999999   44   2333 46889999999999885

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.28  E-value=0.17  Score=41.28  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=29.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|.|||+|-.|.++|+.|+.++-.-+++|+|.+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            456899999999999999999984333468899843

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.11  E-value=0.12  Score=44.13  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=27.0

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +.|.|||.|-.|+..|..+++   |++|+.+|-+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~---g~~V~g~Din   31 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSL---QNEVTIVDIL   31 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT---TSEEEEECSC
T ss_pred             CEEEEECCChhHHHHHHHHHC---CCcEEEEECC
Confidence            479999999999999988874   7899999944

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.02  E-value=0.072  Score=46.58  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=27.1

Q ss_pred             cccCCCCeEEEEEEeecccCcchHHH-HHHHHHHHHHHHHHh
Q 011610          428 ESKIHPRLFFAGEVLNVDGVTGGFNF-QNAWSGGYIAGTSIG  468 (481)
Q Consensus       428 esk~~~gLy~~GE~ldv~g~~GGynl-~~A~~sG~~AG~~aa  468 (481)
                      +-+++||+|+||   ||..  |.+.| +.|..-|++|++++.
T Consensus       191 ~~TsvpgIyA~G---Dv~~--g~~~l~~~A~~eG~~aa~~~~  227 (235)
T d1h6va1         191 EQTNVPYIYAIG---DILE--GKLELTPVAIQAGRLLAQRLY  227 (235)
T ss_dssp             SBCSSTTEEECG---GGBT--TSCCCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEE---eccC--CCcccHHHHHHHHHHHHHHHc
Confidence            358999999999   6532  34555 589999999988774

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=89.84  E-value=0.18  Score=40.70  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=27.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||+|..|.+.|+.|+..+-.-+++|+|.+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence            4799999999999999999984222479999944

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=0.064  Score=46.39  Aligned_cols=39  Identities=13%  Similarity=0.093  Sum_probs=28.5

Q ss_pred             cccccCCCCeEEEEEEeecccCcchH-HHHHHHHHHHHHHHHHhHH
Q 011610          426 TMESKIHPRLFFAGEVLNVDGVTGGF-NFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       426 t~esk~~~gLy~~GE~ldv~g~~GGy-nl~~A~~sG~~AG~~aa~~  470 (481)
                      .+..+.+||+|+||   |+.   |+. ..+.|...|++|++++..+
T Consensus       175 ~~~~T~~~gvyA~G---Dv~---~~~~l~~~A~~~G~~aa~~~~~~  214 (221)
T d3grsa1         175 EFQNTNVKGIYAVG---DVC---GKALLTPVAIAAGRKLAHRLFEY  214 (221)
T ss_dssp             TTCBCSSTTEEECG---GGG---TSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCccccCCcEEEEE---Ecc---CCcCcHHHHHHHHHHHHHHHcCC
Confidence            34568999999999   653   444 3568888888888776543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.74  E-value=0.16  Score=38.79  Aligned_cols=32  Identities=16%  Similarity=0.108  Sum_probs=26.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      ...+|+|||+|.+|+-.|..|++  ...+|+++-
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~--~ak~v~~~~   62 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTP--VAKHPIYQS   62 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHH--hcCEEEEEE
Confidence            45799999999999999999998  455665555

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.15  Score=42.28  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      -.|+|+|+|+.|++++..+..  .|. +|+++|++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~--~G~~~Vi~~d~~   60 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLS   60 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESC
T ss_pred             CEEEEECCCccHHHHHHHHHH--cCCceEEeccCC
Confidence            369999999999999988877  576 68888854

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.60  E-value=0.094  Score=45.57  Aligned_cols=42  Identities=12%  Similarity=0.112  Sum_probs=32.3

Q ss_pred             cCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHh
Q 011610          430 KIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA  474 (481)
Q Consensus       430 k~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~  474 (481)
                      ...+++|+||   |+.+..+....+.|+.||+.|++.++.+.+++
T Consensus       304 ~~~~~v~~~G---D~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~~  345 (347)
T d1b5qa1         304 APVGRVYFTG---EHTSEHYNGYVHGAYLSGIDSAEILINCAQKK  345 (347)
T ss_dssp             CCBTTEEECS---GGGCSSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCEEEEE---ccccCcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3568999999   66555433347899999999999998887653

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.39  E-value=0.16  Score=49.65  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=34.5

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610           47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL   87 (481)
Q Consensus        47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g   87 (481)
                      .+.+|||||+|-|..=+..|..|++  .|.+|+=+|++ ..|
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr--~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSYYG   42 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSC
T ss_pred             CCCccCEEEECCChHHHHHHHHHHh--cCCEEEEecCCCcCC
Confidence            3578999999999999999999999  79999999966 455

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.35  E-value=0.29  Score=40.34  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=28.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|.|||+|..|.++|+.|+.++-.-+++|+|.+
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            45899999999999999999984323369999944

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.16  E-value=1.3  Score=38.23  Aligned_cols=22  Identities=23%  Similarity=0.161  Sum_probs=20.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhc
Q 011610           50 EELLVVVGGGAAGVYGAIRAKT   71 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~   71 (481)
                      ..+|+|||+|-.++=+|..|.+
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r   60 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLT   60 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHS
T ss_pred             CceEEEECCchhHHHHHHHHhc
Confidence            5799999999999999999987

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.09  E-value=0.11  Score=44.82  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=27.1

Q ss_pred             cccCCCCeEEEEEEeecccCcchHH-HHHHHHHHHHHHHHHh
Q 011610          428 ESKIHPRLFFAGEVLNVDGVTGGFN-FQNAWSGGYIAGTSIG  468 (481)
Q Consensus       428 esk~~~gLy~~GE~ldv~g~~GGyn-l~~A~~sG~~AG~~aa  468 (481)
                      ..+.+||+|++|   |+   ++|.. .++|...|+.|+++++
T Consensus       179 ~~T~v~gi~A~G---Dv---~~g~~l~~~A~~~g~~aa~~i~  214 (221)
T d1dxla1         179 FSTNVSGVYAIG---DV---IPGPMLAHKAEEDGVACVEYLA  214 (221)
T ss_dssp             CBCSSTTEEECS---TT---SSSCCCHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCEEEEe---cc---CCCcccHHHHHHHHHHHHHHHc
Confidence            357899999999   55   34444 5799999999988775

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.04  E-value=0.083  Score=46.40  Aligned_cols=34  Identities=15%  Similarity=0.092  Sum_probs=26.3

Q ss_pred             ccCCCCeEEEEEEeecccCcchHHH-HHHHHHHHHHHHHHh
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFNF-QNAWSGGYIAGTSIG  468 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGynl-~~A~~sG~~AG~~aa  468 (481)
                      .+.+||+|+||   |+   +||..| ++|...|++|++++-
T Consensus       198 ~Ts~~~iyA~G---Dv---~~~~~~~~~A~~eg~~aa~~~~  232 (240)
T d1feca1         198 KTNVDNIYAIG---DV---TDRVMLTPVAINEGAAFVDTVF  232 (240)
T ss_dssp             BCSSTTEEECG---GG---GCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCEEEEE---EC---CCCccchhhHHHHHHHHHHHHh
Confidence            46899999999   44   456654 589999988887763

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.093  Score=47.60  Aligned_cols=39  Identities=28%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHH
Q 011610          429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKL  470 (481)
Q Consensus       429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~  470 (481)
                      .+++||||||||-... +..|+  ++.|+.||+.|+..+.+.
T Consensus       408 ~~~~~~l~fAGe~t~~-~~~g~--~~GA~~SG~~aA~~Il~~  446 (449)
T d2dw4a2         408 PQPIPRLFFAGEHTIR-NYPAT--VHGALLSGLREAGRIADQ  446 (449)
T ss_dssp             --CCCCEEECSGGGCT-TSCSS--HHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEcCCcCC-CCcee--hHHHHHHHHHHHHHHHHH
Confidence            5678999999975443 22332  889999999999888654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=88.54  E-value=0.26  Score=40.96  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=27.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..+|+|+|+|-++-++++.|++  .|.+|.|+.|.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~--~g~~i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLS--LDCAVTITNRT   50 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHhcc--cceEEEeccch
Confidence            4689999999999999999998  56677777643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.44  E-value=0.23  Score=40.34  Aligned_cols=34  Identities=18%  Similarity=0.152  Sum_probs=27.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|.|||+|..|.++|+.|+.++-.-+++|+|.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            4799999999999999999884322368888843

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.39  E-value=0.22  Score=40.95  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=26.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      -.|+|+|+|+.|++++..++.  .|.+|+++|+.
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~   60 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARA--MGLHVAAIDID   60 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred             CEEEEeeccccHHHHHHHHHH--cCCccceecch
Confidence            479999999999998876666  68899999854

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.29  E-value=0.18  Score=40.78  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=26.9

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      .+|.|||+|..|.++|+.|+.+ .-.+++++|.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~-~l~dl~l~D~   33 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAK-ELGDIVLLDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCSEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CcceEEEEee
Confidence            4799999999999999999984 2248999994

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.14  E-value=0.23  Score=40.02  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=27.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||+|-.|.++|+.++.++-..+++|+|.+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            4799999999999999999885333578888843

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.05  E-value=0.15  Score=43.77  Aligned_cols=49  Identities=24%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             CCCCCC---CCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhH
Q 011610          416 GVPLSE---ISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK  469 (481)
Q Consensus       416 Gv~~~e---i~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~  469 (481)
                      ||.++|   |-.+-...+.+||+|+||   |+.  .|..-.++|-..|+.|+++++.
T Consensus       172 gv~l~~~G~i~vd~~~~T~vpgiyA~G---Dv~--~g~~l~~~A~~~G~~aa~~i~g  223 (229)
T d3lada1         172 GVTLDERGFIYVDDYCATSVPGVYAIG---DVV--RGAMLAHKASEEGVVVAERIAG  223 (229)
T ss_dssp             SCCBCTTSCBCCCTTSBCSSTTEEECG---GGS--SSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CeeecCCCcEEecccccCCCCCEEEEe---CCc--chHHHHHHHHHHHHHHHHHHcC
Confidence            455554   222223358899999999   552  2223467888889888887753

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=87.88  E-value=0.26  Score=39.83  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|.|||+|..|.++|+.++.++-.-+++|+|.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4799999999999999999984333368999943

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=87.87  E-value=0.28  Score=39.53  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=27.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|.|||+|-.|.+.|+.++.+.-.-+++|+|..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            4799999999999999999984323379999943

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.67  E-value=0.21  Score=41.33  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=26.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .-.|+|+|+|+.|++++..+..  .|.+|++++.+
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~   60 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKA--MGAETYVISRS   60 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESS
T ss_pred             CCEEEEECCCCcchhHHHHhhh--ccccccccccc
Confidence            3479999999999998776665  58899888853

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.05  E-value=0.31  Score=39.29  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=27.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||+|-.|.++|+.++.++---+++|+|.+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            4799999999999999999974222358999943

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=86.88  E-value=0.27  Score=41.10  Aligned_cols=32  Identities=28%  Similarity=0.616  Sum_probs=26.1

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      -.|+|+|+|+.|++++..+..  .|. +|+++|++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~--~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGS   62 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESC
T ss_pred             CEEEEECCCccchhheecccc--cccccccccccc
Confidence            479999999999998887776  576 68888853

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.64  E-value=0.37  Score=39.68  Aligned_cols=34  Identities=18%  Similarity=0.065  Sum_probs=27.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||.|..|.+.|..|.+.+...+|..+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            3699999999999999999984333578888865

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=86.45  E-value=0.14  Score=42.79  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=26.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      ++.+|+|||||++|+-+|..|++  .|.+|.|++
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~--~g~~v~i~~   33 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQ--AGYQGLITV   33 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHH--HTCCSCEEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHh--cCCceEEEE
Confidence            45679999999999999999998  466666665

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.92  E-value=0.42  Score=38.59  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             CeEEEECC-chHHHHHHHHHhccCCCCcEEEEeC
Q 011610           51 ELLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        51 ~DVvIIGg-G~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ++|.|||+ |..|.++|+.|+.++---+++|+|.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~   34 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccc
Confidence            47999996 9999999999998321137888884

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.73  E-value=0.37  Score=39.70  Aligned_cols=32  Identities=28%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      .-.|+|+|+|+.|++++..+..  .|.+|++++.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~--~Ga~~i~~~~   62 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTT   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEES
T ss_pred             CCEEEEeccchHHHHHHHHhhc--ccccchhhcc
Confidence            3579999999999998766665  6888888884

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.67  E-value=0.39  Score=39.94  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=26.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      .-.|+|+|+|+.|++++..++.  .|. +|+++|.+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~--~Ga~~Vi~~d~~   61 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKL--RGAGRIIGVGSR   61 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHT--TTCSCEEEECCC
T ss_pred             CCEEEEEcCCcchhhhhhhhhc--ccccccccccch
Confidence            3479999999999998887776  565 68888843

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.65  E-value=0.32  Score=39.86  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|-|||-|..|...|..|++  .|++|.++|+.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~--~G~~V~~~d~~   32 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRN   32 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred             CEEEEEehhHHHHHHHHHHHH--CCCeEEEEeCC
Confidence            369999999999999999999  79999999965

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=85.52  E-value=0.39  Score=39.97  Aligned_cols=32  Identities=9%  Similarity=0.120  Sum_probs=29.7

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .+|-|||-|..|...|..|.+  .|++|.++|+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~--~G~~V~v~dr~   34 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMND--HGFVVCAFNRT   34 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHH--CCCeEEEEcCC
Confidence            579999999999999999999  79999999965

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.13  E-value=0.41  Score=40.67  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=25.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~   83 (481)
                      .-.|+|+|+|+.|++++..++.  .|. +|+++|.
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~--~ga~~Vi~~d~   58 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARL--LGAAVVIVGDL   58 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--hcccceeeecc
Confidence            3589999999999999888876  344 6777774

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=84.96  E-value=0.41  Score=39.54  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=27.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~   84 (481)
                      ..+|+|+|+|-++-++++.|.+  .|. +|.|+.|+
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~--~g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKN--SGFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHH--TTCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeccc
Confidence            4689999999999999999998  564 67777654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.87  E-value=0.54  Score=37.14  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=28.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ...+|+|||||-+.+-.|+.|++  --.+|.|+-|.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~   66 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRR   66 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSS
T ss_pred             CCCEEEEEcCchHHHHHHHHHhC--CCCcEEEEEec
Confidence            35799999999999999999998  45678888643

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.75  E-value=0.38  Score=39.44  Aligned_cols=32  Identities=13%  Similarity=0.098  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||-|..|...|..|.+  .|++|.++|++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~--~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLK--AGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHH--CCCeEEEEECc
Confidence            479999999999999999999  79999999965

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.48  E-value=0.44  Score=39.57  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|-|||-|..|...|..|.+  .|++|.+.|++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~--~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAE--KGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHH--CCCeEEEEECC
Confidence            479999999999999999999  79999999964

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.30  E-value=0.29  Score=42.26  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             ecCCCCCCCCCcccccccCCCCeEEEEEEeecccCcchH-HHHHHHHHHHHHHHHH
Q 011610          413 TAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGF-NFQNAWSGGYIAGTSI  467 (481)
Q Consensus       413 t~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGy-nl~~A~~sG~~AG~~a  467 (481)
                      ..|+|.++|.     ..+.+||+|+||   ||.   |+. -.+.|..-|++|++++
T Consensus       186 ~~G~I~vde~-----~~T~~~~iyAvG---Dv~---~~~~l~~~A~~eg~~aa~~i  230 (238)
T d1aoga1         186 KNGGVQVDEY-----SRTNVSNIYAIG---DVT---NRVMLTPVAINEAAALVDTV  230 (238)
T ss_dssp             ETTEECCCTT-----CBCSSTTEEECG---GGG---TSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCeEEecCC-----eeeccCCEEEEE---Eec---CCccchhhHHHHHHHHHHHH
Confidence            3578888764     356899999999   664   333 4568999999998876

>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: Endonuclease VIII
species: Escherichia coli [TaxId: 562]

Probab=83.66  E-value=1.2  Score=32.44  Aligned_cols=69  Identities=22%  Similarity=0.210  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccc---hhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610          326 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFC---LVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH  396 (481)
Q Consensus       326 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~  396 (481)
                      |+++.+.+.+.+..  ...+++.+...|..+.+   +-.=+..++|=+++|.|.+++++|++++.++|.+.+++
T Consensus         8 ~~~~~~~~~~~l~~--~~~~~~~Ik~~LlDQ~~~aGIGN~~~~EiL~~a~i~P~~~~~~L~~~~~~~L~~~~~~   79 (89)
T d1k3xa1           8 PNLTPEVVKERLLS--PRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE   79 (89)
T ss_dssp             TTCCHHHHHHHHHS--TTTTTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHh--cccccchHHHHHhcCccccccCcHHHHHHHHHhcccccCchhhCCHHHHHHHHHHHHH
Confidence            45666666555532  12234556666654422   33445677888899999999999999999999876654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=83.55  E-value=0.52  Score=39.21  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=26.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG   84 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~~   84 (481)
                      .-.|+|+|+|+.|++++..+..  .|.+ |++.|.+
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~--~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKI--AGASRIIAIDIN   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSC
T ss_pred             CCEEEEECCChHHHHHHHHHHH--hCCceeeeeccc
Confidence            3479999999999999998887  5764 5666643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=83.50  E-value=0.59  Score=37.70  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=28.3

Q ss_pred             eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      .++|+|.|..|...+-.|.+  .|.+|+++|.+
T Consensus         5 HiII~G~g~~g~~l~~~L~~--~~~~v~vId~d   35 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQ--RGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHH--cCCCEEEEecc
Confidence            49999999999999999998  68999999954

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.14  E-value=0.45  Score=38.86  Aligned_cols=31  Identities=32%  Similarity=0.382  Sum_probs=25.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      -.|+|+|+|+.|++++..+..  .|.+|.+++.
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~--~g~~v~~~~~   59 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDI   59 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECS
T ss_pred             CEEEEeecccchhhhhHHHhc--CCCeEeccCC
Confidence            479999999999998777776  6888888874

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.99  E-value=0.5  Score=38.05  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=26.1

Q ss_pred             eEEEECC-chHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           52 LLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        52 DVvIIGg-G~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      +|.|||| |..|.++|+.|+.++---+++|+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6999996 99999999999984222358899943

>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Escherichia coli [TaxId: 562]

Probab=82.93  E-value=0.96  Score=32.98  Aligned_cols=67  Identities=18%  Similarity=0.086  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccc---hhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccC
Q 011610          326 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFC---LVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHC  397 (481)
Q Consensus       326 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~  397 (481)
                      ++++.+.+.+.+..     ++..+..+|..+.+   +-.=+..++|=.++|.|.+++++|++++.++|.+.+++.
T Consensus         7 ~~~~~~~~~~~l~~-----~~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~L~~~~~~~L~~~i~~v   76 (88)
T d1k82a1           7 DDFNGEYLHQKCAK-----KKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAV   76 (88)
T ss_dssp             TTSCHHHHHHHHTT-----CCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHhc-----CCchHHHHHHccccccccchHHHHHHHHHHCCCccChHHHCCHHHHHHHHHHHHHH
Confidence            56677766655532     34445555443322   334456778888999999999999999999998776553

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.66  E-value=0.47  Score=39.61  Aligned_cols=52  Identities=17%  Similarity=0.124  Sum_probs=32.4

Q ss_pred             CCCCCCCC-CcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHh
Q 011610          415 GGVPLSEI-SLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLS  471 (481)
Q Consensus       415 GGv~~~ei-~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~  471 (481)
                      |+|.++.. +..++ .+.+||+|++|   |+.+...= -.-.|..+|..|+.+|-+|.
T Consensus       135 g~i~~~~~~~~~~~-~T~v~gV~aaG---Dv~~~~~~-q~i~Aag~G~~AA~~a~~yl  187 (190)
T d1trba1         135 GYIKVQSGIHGNAT-QTSIPGVFAAG---DVMDHIYR-QAITSAGTGCMAALDAERYL  187 (190)
T ss_dssp             TEECCCCSSSSCTT-BCSSTTEEECG---GGGCSSSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCccccc-ccccCeEEEeE---EecCccee-EEEEEeccHHHHHHHHHHHH
Confidence            44555432 12233 57899999999   55432211 24456678999999988775

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=0.53  Score=33.63  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=28.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ..|.|||||--|.|.+..+.+  -|++|.+++.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~--LG~~v~vldp~   33 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEP--LGIAVWPVGLD   33 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGG--GTEEEEEECTT
T ss_pred             CEEEEEcCCHHHHHHHHHHHH--cCCEEEEEcCC
Confidence            468999999999999999999  68999999943

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.71  E-value=0.63  Score=37.53  Aligned_cols=32  Identities=22%  Similarity=0.168  Sum_probs=28.5

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ++|.|||.|..|...|..|++  .|++|++.++.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~--~g~~v~~~~~~   32 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRS--RGVEVVTSLEG   32 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--TTCEEEECCTT
T ss_pred             CEEEEEcHHHHHHHHHHHHHH--CCCeEEEEcCc
Confidence            469999999999999999999  78999888844

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.71  E-value=0.63  Score=38.70  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=26.8

Q ss_pred             CeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011610           51 ELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~   84 (481)
                      --|+|+|+|+.|++++..++.  .| .+|+++|.+
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~--~G~~~Vi~vd~~   63 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKS--AGASRIIGIDLN   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSC
T ss_pred             CEEEEECCCchhHHHHHHHHH--cCCceEEEecCc
Confidence            359999999999999988887  56 579999954

>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Lactococcus lactis [TaxId: 1358]

Probab=81.68  E-value=1.3  Score=32.24  Aligned_cols=66  Identities=9%  Similarity=0.026  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHHHHHHhchhhhhhhhCCCcc---chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610          326 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEF---CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH  396 (481)
Q Consensus       326 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~  396 (481)
                      ++++.+.+.+.+..     +++.+...|..+.   .+-.=+..++|=+++|.|.+++++|++++++.|.+.+++
T Consensus         7 ~~f~~~~~~~~l~~-----~~~~ik~~LldQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~   75 (88)
T d1tdza1           7 EDFDEKLFREKLRK-----STKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE   75 (88)
T ss_dssp             TTCCHHHHHHHHHH-----CCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHc-----ccccHHHHHHhccccCCcChHHHHHHHHHHHcCccchhhHcCHHHHHHHHHHHHH
Confidence            56677766665532     2344554443221   333555678888899999999999999999999877654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.50  E-value=0.7  Score=37.19  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=26.6

Q ss_pred             CeEEEEC-CchHHHHHHHHHhcc-CCCCcEEEEeCC
Q 011610           51 ELLVVVG-GGAAGVYGAIRAKTV-APKLNVVIIEKG   84 (481)
Q Consensus        51 ~DVvIIG-gG~aGl~aA~~la~~-~~g~~V~llE~~   84 (481)
                      ++|.||| +|..|.+.|+.|+.+ ....++.++|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            4799999 599999999988642 234679999943

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=0.7  Score=40.54  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL   87 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g   87 (481)
                      ...|+|||+|..|..+|..|++.  |. +++|+|.+.+-
T Consensus        30 ~~~VliiG~GglGs~va~~La~~--Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDTVS   66 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCBCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCCeEEEECCcccc
Confidence            47999999999999999999994  54 78899977554

>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Thermus thermophilus [TaxId: 274]

Probab=81.04  E-value=1.2  Score=32.46  Aligned_cols=66  Identities=12%  Similarity=-0.007  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHHHhchhhhhhhhCCCcc---chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610          326 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEF---CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH  396 (481)
Q Consensus       326 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~  396 (481)
                      |+++.+.+.+.+..     +++.+..+|..+.   .+-.=+..++|=+++|.|.+++++|++++.+.|.+.+++
T Consensus         7 ~~~~~~~~~~~l~~-----~~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~i~~   75 (89)
T d1ee8a1           7 EAFAFPGFFRGLKE-----SARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE   75 (89)
T ss_dssp             TTCCHHHHHHHHHT-----CCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhc-----CCCcHHHHHHhccccCCCCcHHHHHHHHHHHcCccchhhhCCHHHHHHHHHHHHH
Confidence            45677766655532     2344444433221   233445678888899999999999999999999877655

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=81.02  E-value=0.67  Score=38.34  Aligned_cols=34  Identities=15%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610           49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG   84 (481)
Q Consensus        49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~   84 (481)
                      ....|+|+|+|-++-++++.|.+  .+.+|.|+-|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~--~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc--cCceeeeccch
Confidence            35689999999999999999987  46678877754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.94  E-value=0.98  Score=36.49  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=27.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610           50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK   83 (481)
Q Consensus        50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~   83 (481)
                      ..+|.|||+|-.|.++|+.|++.. =.+++|+|.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~-l~el~L~Di   35 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDI   35 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEec
Confidence            468999999999999999888742 247889994

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=80.03  E-value=0.92  Score=36.34  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=24.9

Q ss_pred             eEEEEC-CchHHHHHHHHHhccCCCCcEEEEe
Q 011610           52 LLVVVG-GGAAGVYGAIRAKTVAPKLNVVIIE   82 (481)
Q Consensus        52 DVvIIG-gG~aGl~aA~~la~~~~g~~V~llE   82 (481)
                      +|.||| +|..|.++|+.++.+.-.-+++|+|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D   33 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVD   33 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence            799999 6999999999999842223577777