Citrus Sinensis ID: 011615

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
MEFCLKSRNNILHPHVIKILSTLLTLGLLSPQVAECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQACELLPKKEPTDCFFPDDKLPIDDVRLNTCSASISKA
cccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccccccEEEEEcccccccccccccHHHHHHHHHHHHHcccccccEEEEcccEEEEEEEEEEcccEEEEEccEEEEccccccccccccccccccccccccccccEEcEEEEccccEEEEcccEEEcccccHHHcccccccccccccEEEEEEEEEcEEEEcEEEEccccEEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEEcEEEccccEEEEcccccccccccccccccEEEEEEEEEcccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEEcccEEEEEEcccccccccccccccccEEEcEEEEEEEEEcccEEEEEEEcccccEEcEEEEEEEEEEcccccccEEEEEEEEEEEccccccccccccccccccEEccccccccccEEEccEEcccccc
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccEEEccEEEcccEEEEEEEcEEEEccccccccccccccccccccccccccccEEEEEEccccEEEEEccccEEccccHHHHHHHcccccccccccEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEEcccHccEEEccccccEEEEEEEEccccccEEEEccccccccEEEEEEEEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEcEEEEEEEEccccccccccccccccEEEEEEEEEEEEEcEccEEEEEEcccccccccEEEEEEEEEEcccccccccEEccEEEEcccccccccHHccccccccccccccccccccEEEEEEEEEcccc
mefclksrnnilhpHVIKILSTLLTlgllspqvaecrptknsytieFQALNCRKHsavltdfggvgdgktsnTKAFNTAISNLSKYaadggaqlivppgkwltgsfnltshfTLYIHKDALLLasqdesewpllpplpsygrgrdepggrfsslifgtnlTDVVVTggnatingqgepwwIKYRKKQFNVTRPYLIEVMFsdnvqisnltlidspswnvhpvyssnvliqgltirapidspntdginpdsctntriednyivsgddcvavksgwdeygikvgmpTQHLIIRRLICISPDSAAIALgsemsggikdvraeditaintqsgvriktavgRGAYVKEIYVRRMTMKTMKYVFWMtgdygshpdpgfdpkalptvtginyrdMVADNvtqsakldgirndpftgicisnvtikltekpkelqwnctniqgitsrvtpqacellpkkeptdcffpddklpiddvrlntcsasiska
MEFCLKSRNNILHPHVIKILSTLLTLGLLSPQVAECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNatingqgepwwIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIrapidspntdginpDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITaintqsgvriktavgrgayvkeiyvrRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSakldgirndpftGICISNVTIkltekpkeLQWNCTNIQGITSRVTPQACELLPKKEPTDCFFPDDKLPIDDVRLNTCSASISKA
MEFCLKSRNNILHPHVIKIlstlltlgllsPQVAECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWpllpplpSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQACELLPKKEPTDCFFPDDKLPIDDVRLNTCSASISKA
***CLKSRNNILHPHVIKILSTLLTLGLLSPQVAECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLL***************RFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQACELLPKKEPTDCFFPDDKLPIDDVRLN*********
*******RNNILHPHVIKILSTLLTLGLLSPQVAECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQAC***********FFPDDKLPIDDVRLNT********
MEFCLKSRNNILHPHVIKILSTLLTLGLLSPQVAECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQACELLPKKEPTDCFFPDDKLPIDDVRLNTCSASISKA
*EFCLKSRNNILHPHVIKILSTLLTLGLLSPQVAECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQACELLPKKEPTDCFFPDDKLPIDDVRLNTCSASIS**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEFCLKSRNNILHPHVIKILSTLLTLGLLSPQVAECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQACELLPKKEPTDCFFPDDKLPIDDVRLNTCSASISKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query481 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.927 0.908 0.674 0.0
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.752 0.704 0.280 6e-26
P43212514 Polygalacturonase OS=Cryp N/A no 0.694 0.649 0.272 6e-23
P27644312 Polygalacturonase OS=Rhiz yes no 0.438 0.676 0.297 2e-21
Q9LW07456 Probable polygalacturonas no no 0.567 0.598 0.282 3e-21
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.735 0.698 0.266 8e-21
Q02096462 Polygalacturonase OS=Pers N/A no 0.715 0.744 0.258 2e-19
Q8RY29433 Polygalacturonase ADPG2 O no no 0.686 0.762 0.266 3e-19
O23147431 Polygalacturonase ADPG1 O no no 0.692 0.772 0.252 3e-18
O22818405 Probable polygalacturonas no no 0.721 0.856 0.255 5e-18
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/449 (67%), Positives = 364/449 (81%), Gaps = 3/449 (0%)

Query: 34  AECRPTKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQ 93
            ECR  +    +E+ A++CR HSA L DFGGVGDG+T NTKAF  A+S LSKY ++GGAQ
Sbjct: 40  GECRKGRILEALEYSAISCRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQ 99

Query: 94  LIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSS 153
           L VP GKWLTGSF+LTSHFTL++H+DA+LLASQD S+WP++ PLPSYGRGRD   GR++S
Sbjct: 100 LYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTS 159

Query: 154 LIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLID 213
           LIFGTNLTDV++TG N TI+GQG  WW ++   +   TRPYLIE+M+S ++QISNLTL++
Sbjct: 160 LIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLN 219

Query: 214 SPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSG 273
           SPSWNVHPVYS N+LIQG+TI AP+ SPNTDGINPDSCTNTRIED YIVSGDDCVAVKSG
Sbjct: 220 SPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 279

Query: 274 WDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIK 333
           WDEYGI  GMPT+ L+IRRL CISP SA IALGSEMSGGI+DVRAEDI AIN++SG+RIK
Sbjct: 280 WDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIK 339

Query: 334 TAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADN 393
           T +GRG YVK+IYVR MTMKTMK+ FWMTG+YGSH D  +DPKA P + GINYRDMVA+N
Sbjct: 340 TGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAEN 399

Query: 394 VTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQACELLPKKE 453
           V+ +A+L+GI +DPFTGICISNVTI L  K K++ W CT+++GI+S VTP  C  LP + 
Sbjct: 400 VSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQG 459

Query: 454 PTD---CFFPDDKLPIDDVRLNTCSASIS 479
           P     C FP + LPID V L  CS  I+
Sbjct: 460 PEKTSLCNFPAESLPIDTVELQKCSYGIN 488

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
411101510481 polygalacturonase [Litchi chinensis] 0.977 0.977 0.769 0.0
356535839476 PREDICTED: probable polygalacturonase-li 0.979 0.989 0.738 0.0
356534105475 PREDICTED: probable polygalacturonase-li 0.964 0.976 0.739 0.0
255545184473 polygalacturonase, putative [Ricinus com 0.960 0.976 0.738 0.0
224134791452 predicted protein [Populus trichocarpa] 0.937 0.997 0.738 0.0
356530824476 PREDICTED: probable polygalacturonase-li 0.975 0.985 0.711 0.0
225464581478 PREDICTED: probable polygalacturonase-li 0.983 0.989 0.721 0.0
358248902477 uncharacterized protein LOC100785005 pre 0.975 0.983 0.699 0.0
357443847478 Polygalacturonase-like protein [Medicago 0.948 0.953 0.697 0.0
356520375482 PREDICTED: probable polygalacturonase-li 0.993 0.991 0.686 0.0
>gi|411101510|gb|AFW04075.1| polygalacturonase [Litchi chinensis] Back     alignment and taxonomy information
 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/477 (76%), Positives = 414/477 (86%), Gaps = 7/477 (1%)

Query: 1   MEF-CLKSRNNILHPHVIKILSTLLTLGLLSP--QVAECRPTKNSYTIEFQALNCRKHSA 57
           ME+ CLKSRN+    HVI++ +TL+ LGLL    QVAECR  +    +EF ALNCRKHSA
Sbjct: 1   MEYLCLKSRNS----HVIEMSTTLILLGLLVLSLQVAECRSKQPLGNLEFLALNCRKHSA 56

Query: 58  VLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIH 117
           VLTDFGGVGDGKTSNTKAF +AI  LSK A+DGGA L+VPPGKWLTGSFNLTSHFTLYIH
Sbjct: 57  VLTDFGGVGDGKTSNTKAFRSAIDKLSKLASDGGAALVVPPGKWLTGSFNLTSHFTLYIH 116

Query: 118 KDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGE 177
           KDA+LL SQ ESEWP LP LPSYGRGRD  GGR SSLIFGTNLTDVVVTG N TI+GQG 
Sbjct: 117 KDAVLLGSQVESEWPRLPVLPSYGRGRDAAGGRLSSLIFGTNLTDVVVTGANGTIDGQGA 176

Query: 178 PWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAP 237
            WW K++K Q +VTRPYLIE+M+S+ VQISNLT ++SPSWNVHP+YSSNV+IQGLTI AP
Sbjct: 177 YWWGKFKKNQLDVTRPYLIEIMYSNQVQISNLTFVNSPSWNVHPIYSSNVIIQGLTILAP 236

Query: 238 IDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICIS 297
           +DSPNTDGI+PDSCT+ RIED YIVSGDDC+AVKSGWD+YGIKVGMPTQ L+IRR+ CIS
Sbjct: 237 VDSPNTDGIDPDSCTDIRIEDCYIVSGDDCIAVKSGWDQYGIKVGMPTQRLVIRRVTCIS 296

Query: 298 PDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKY 357
           PDSA IALGSEMSGGI+DVRAEDITAI+TQSGVRIKT VGRG YVK+IYVRRMTMKTMKY
Sbjct: 297 PDSATIALGSEMSGGIRDVRAEDITAIDTQSGVRIKTGVGRGGYVKDIYVRRMTMKTMKY 356

Query: 358 VFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVT 417
           VFWMTG YG HPDPGFDPKALP + GINYRDMVA+NVT SA+LDGI NDPF GICI NVT
Sbjct: 357 VFWMTGSYGQHPDPGFDPKALPDIHGINYRDMVAENVTYSARLDGIPNDPFKGICIFNVT 416

Query: 418 IKLTEKPKELQWNCTNIQGITSRVTPQACELLPKKEPTDCFFPDDKLPIDDVRLNTC 474
           I LT+KPKELQWNCT++QG+TSRVTP AC LLP+K+P DC FP D+LP++D++L  C
Sbjct: 417 ITLTKKPKELQWNCTDVQGVTSRVTPPACSLLPEKKPVDCPFPADRLPVEDLKLKRC 473

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356535839|ref|XP_003536450.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|356534105|ref|XP_003535598.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|255545184|ref|XP_002513653.1| polygalacturonase, putative [Ricinus communis] gi|223547561|gb|EEF49056.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224134791|ref|XP_002327490.1| predicted protein [Populus trichocarpa] gi|222836044|gb|EEE74465.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356530824|ref|XP_003533980.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|225464581|ref|XP_002273669.1| PREDICTED: probable polygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|358248902|ref|NP_001240215.1| uncharacterized protein LOC100785005 precursor [Glycine max] gi|255635243|gb|ACU17976.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357443847|ref|XP_003592201.1| Polygalacturonase-like protein [Medicago truncatula] gi|355481249|gb|AES62452.1| Polygalacturonase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356520375|ref|XP_003528838.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.914 0.938 0.713 4.5e-178
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.910 0.918 0.704 7.7e-174
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.891 0.866 0.675 1.6e-166
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.929 0.939 0.641 5e-163
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.844 0.861 0.467 1.1e-105
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.814 0.825 0.493 7.1e-100
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.827 0.896 0.487 1.2e-99
TAIR|locus:2078531484 AT3G42950 [Arabidopsis thalian 0.814 0.809 0.453 3.8e-94
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.812 0.870 0.465 2.4e-92
TAIR|locus:2086740455 AT3G16850 [Arabidopsis thalian 0.841 0.890 0.449 1.7e-91
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
 Identities = 319/447 (71%), Positives = 368/447 (82%)

Query:    35 ECRPTKNSYT--IEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGA 92
             E R  +NS T  IEF ALNCRKHSA+LTDFG VGDGKTSNTKAF  AIS LS+ A DGGA
Sbjct:    21 ESRSHRNSVTSKIEFSALNCRKHSAILTDFGAVGDGKTSNTKAFRNAISKLSQMATDGGA 80

Query:    93 QLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWXXXXXXXSYGRGRDEPG-GRF 151
             QL+VPPGKWLTGSFNLTSHFTL+I + A +LASQDESEW       SYG+GRD  G GRF
Sbjct:    81 QLVVPPGKWLTGSFNLTSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRF 140

Query:   152 SSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTL 211
             +SLI GTNLTDVV+TG N TINGQG+ WW K++KKQF +TRPYLIE++FS N+QISN+TL
Sbjct:   141 NSLISGTNLTDVVITGNNGTINGQGQYWWDKFKKKQFKITRPYLIEILFSKNIQISNITL 200

Query:   212 IDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVK 271
             IDSPSWN+HPVY ++V+++ +T+ AP+  PNTDGINPDSCTNT IED YIVSGDDC+AVK
Sbjct:   201 IDSPSWNIHPVYCNSVIVKSVTVLAPVTVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVK 260

Query:   272 SGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVR 331
             SGWD+YGIK GMPTQ L IRRL CISP SA +ALGSEMSGGIKDVR ED+T  NT+S +R
Sbjct:   261 SGWDQYGIKFGMPTQQLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLTNTESAIR 320

Query:   332 IKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVA 391
             IKTAVGRGAYVK+IY RR+TMKTMKYVFWM+G+YGSHPD GFDPKALP +T INYRDM A
Sbjct:   321 IKTAVGRGAYVKDIYARRITMKTMKYVFWMSGNYGSHPDEGFDPKALPEITNINYRDMTA 380

Query:   392 DNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSRVTPQACELLPK 451
             +NVT SA LDGI  DPFTGICISNVTI L  K K++QWNCT++ G+TSRVTP+ C LLP+
Sbjct:   381 ENVTMSASLDGIDKDPFTGICISNVTIALAAKAKKMQWNCTDVAGVTSRVTPEPCSLLPE 440

Query:   452 KEP----TDCFFPDDKLPIDDVRLNTC 474
             K+      DC FP D +PI+ V L  C
Sbjct:   441 KKAQAKNVDCAFPSDLIPIESVVLKKC 467
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078531 AT3G42950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-55
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 3e-31
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 2e-24
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 5e-24
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 5e-18
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 6e-17
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-16
PLN02155394 PLN02155, PLN02155, polygalacturonase 9e-14
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 9e-09
TIGR03805314 TIGR03805, beta_helix_1, parallel beta-helix repea 0.002
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  193 bits (491), Expect = 2e-55
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 29/320 (9%)

Query: 57  AVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYI 116
             ++D G VGDG T NT A   AI      A+ GG  +++P G +L+G   L S+ TL++
Sbjct: 83  FSVSDDGAVGDGATDNTAAIQAAIDAC---ASAGGGTVLLPAGTYLSGPLFLKSNVTLHL 139

Query: 117 HKDALLLASQDESEWPL---------LPPL------PSYGRGRDEPGGRFSSLIFGTNLT 161
            + A LLAS +  ++P           P +       +   G     G+   LI G +  
Sbjct: 140 AEGATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSN 199

Query: 162 DVVVTGGNATINGQ----GEPWWIKYRKKQFNVT----RPYLIEVMFSDNVQISNLTLID 213
              + G   TI+G     G+ W+      +  +     RP  + +    NV +  L + +
Sbjct: 200 RKEIWGKG-TIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKN 258

Query: 214 SPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSG 273
           SP W VHPV   N+  + LTI A     NTDG +P SC+N  IE     +GDDC+A+KSG
Sbjct: 259 SPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSG 317

Query: 274 WDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIK 333
               G K   P+++++IR     S     + LGSEM GG++++  ED    NT  G+RIK
Sbjct: 318 AGLDGKKGYGPSRNIVIRNCYFSSGHGGLV-LGSEMGGGVQNITVEDCVMDNTDRGLRIK 376

Query: 334 TAVGRGAYVKEIYVRRMTMK 353
           T  GRG  V+ I      M+
Sbjct: 377 TNDGRGGGVRNIVFEDNKMR 396

Length = 542
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information
>gnl|CDD|163517 TIGR03805, beta_helix_1, parallel beta-helix repeat-containing protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 481
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.87
PLN03003456 Probable polygalacturonase At3g15720 99.86
PLN02218431 polygalacturonase ADPG 99.83
PLN03010409 polygalacturonase 99.83
PLN02793443 Probable polygalacturonase 99.83
PLN02155394 polygalacturonase 99.82
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.8
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.79
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.79
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.58
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.35
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.21
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.81
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.76
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.67
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.51
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.39
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.29
PLN02480343 Probable pectinesterase 98.28
smart00656190 Amb_all Amb_all domain. 98.25
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.24
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.24
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.22
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.22
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.17
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.95
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.92
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.92
smart00656190 Amb_all Amb_all domain. 97.91
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.85
PLN02682369 pectinesterase family protein 97.82
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.76
PLN02773317 pectinesterase 97.73
PLN02497331 probable pectinesterase 97.54
PLN02176340 putative pectinesterase 97.51
PLN02634359 probable pectinesterase 97.38
PRK10531422 acyl-CoA thioesterase; Provisional 97.38
PLN02304379 probable pectinesterase 97.13
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.1
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.05
PLN02432293 putative pectinesterase 97.01
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.99
PLN02665366 pectinesterase family protein 96.99
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.98
PLN02201520 probable pectinesterase/pectinesterase inhibitor 96.98
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.96
PLN02217670 probable pectinesterase/pectinesterase inhibitor 96.94
PLN02671359 pectinesterase 96.93
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 96.91
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 96.83
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.83
PLN02301548 pectinesterase/pectinesterase inhibitor 96.82
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.82
PLN02506537 putative pectinesterase/pectinesterase inhibitor 96.8
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.75
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.72
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.72
PLN02916502 pectinesterase family protein 96.7
PLN02197588 pectinesterase 96.63
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.62
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.62
PLN02314586 pectinesterase 96.61
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.35
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.29
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.21
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.88
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.25
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 94.67
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 93.33
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 91.26
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.55
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.25
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 90.15
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 89.38
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 88.73
PLN02773317 pectinesterase 86.45
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 84.15
PLN02480343 Probable pectinesterase 83.15
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 80.17
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=4e-77  Score=611.48  Aligned_cols=363  Identities=25%  Similarity=0.428  Sum_probs=321.2

Q ss_pred             cceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCc-ceeeeEEe----ccceeEEEccCcEEEecCC
Q 011615           53 RKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGK-WLTGSFNL----TSHFTLYIHKDALLLASQD  127 (481)
Q Consensus        53 ~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~-Yl~~~i~l----~s~~~l~l~~ga~i~~~~~  127 (481)
                      .+.+|||+||||+|||++|||+|||+||++||+  +.+|++|+||+|+ |++++|.|    +|+++|+++  |+|+++.+
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~--~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d  124 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS--SKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD  124 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhc--cCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence            458999999999999999999999999996554  2578999999995 99999999    899999885  89999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCCchhhhhccc---cCCCCCCCeeEEEEeeccE
Q 011615          128 ESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRK---KQFNVTRPYLIEVMFSDNV  204 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g~~ww~~~~~---~~~~~~rp~~i~~~~~~nv  204 (481)
                      +.+|+..               ....||++.+++||+|+|. |+|||+|+.||+....   ......||++|.|.+|+|+
T Consensus       125 ~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv  188 (443)
T PLN02793        125 PDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDL  188 (443)
T ss_pred             hHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccE
Confidence            9888632               1246999999999999996 9999999999975321   1123458999999999999


Q ss_pred             EEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCc
Q 011615          205 QISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMP  284 (481)
Q Consensus       205 ~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~  284 (481)
                      +|+|++++|+|+|++++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||++|++           
T Consensus       189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~-----------  257 (443)
T PLN02793        189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN-----------  257 (443)
T ss_pred             EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------
Confidence            999999999999999999999999999999999889999999999999999999999999999999986           


Q ss_pred             eeeEEEEEEEEeCCCCceEEeccC----cCCCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceeeEE
Q 011615          285 TQHLIIRRLICISPDSAAIALGSE----MSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFW  360 (481)
Q Consensus       285 s~nI~I~n~~~~~~~~~gisIGs~----~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~  360 (481)
                      ++||+|+||+|.+  +|||+|||+    +.++|+||+|+||+|.++.+|+|||||++++|.|+||+|+||+|+++.+||.
T Consensus       258 s~nI~I~n~~c~~--GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~  335 (443)
T PLN02793        258 SSRIKIRNIACGP--GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPII  335 (443)
T ss_pred             cCCEEEEEeEEeC--CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEE
Confidence            8999999999987  789999997    3467999999999999999999999999999999999999999999999999


Q ss_pred             EEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEcc-CeeEEEeccCCCCeeeEEEEeEEEEecCCCCccceEEeeeeccC-
Q 011615          361 MTGDYGSHPDPGFDPKALPTVTGINYRDMVADNV-TQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGIT-  438 (481)
Q Consensus       361 i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~-~~~~~l~g~~~~~~~~I~~~ni~i~~~~~~~~~~~~c~nv~g~~-  438 (481)
                      |+++|++....+.++...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+|+..+++ ...+.|.|++|.. 
T Consensus       336 I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~  414 (443)
T PLN02793        336 IDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSS  414 (443)
T ss_pred             EEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeEC
Confidence            9999976432222334457999999999999986 568899999999999999999999976433 5578999999987 


Q ss_pred             CcccCcccCCC
Q 011615          439 SRVTPQACELL  449 (481)
Q Consensus       439 ~~~~p~~c~~~  449 (481)
                      +.+.|+||+..
T Consensus       415 ~~~~p~~C~~~  425 (443)
T PLN02793        415 GQVYPPPCFSD  425 (443)
T ss_pred             CeEcCCccccC
Confidence            55788899864

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 3e-39
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 6e-13
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 9e-11
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 5e-10
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 4e-07
1nhc_A336 Structural Insights Into The Processivity Of Endopo 9e-06
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 9e-05
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (402), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 190/399 (47%), Gaps = 55/399 (13%)
Query: 59  LTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHK 118
           L DFG  GDG+T  +++F  AI  LSK    GG +LIVP G +LTG  +L S+  L++  
Sbjct: 30  LLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIELHVKG 86
Query: 119 DALLLASQDESEWXXXXXXXSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQG-- 176
               +   +              R        +S L++  +  +V +TG +  ++G    
Sbjct: 87  TIKFIPDPER------YLPVVLTRFEGIELYNYSPLVYALDCENVAITG-SGVLDGSADN 139
Query: 177 EPWWIKYRKKQF----------------------------------NVTRPYLIEVMFSD 202
           E WW    KK F                                  +  RP  ++     
Sbjct: 140 EHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCR 199
Query: 203 NVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIV 262
           NV +  + +I+SP W +HPV S NV+I+ + I +    PN DGI+P+SC    IE     
Sbjct: 200 NVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFD 257
Query: 263 SGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS-AAIALGSEMSGGIKDVRAEDI 321
           +GDD V +KSG D  G ++G+P++++++R  + IS  S   + +GSEMSGG+++V A + 
Sbjct: 258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNN 317
Query: 322 TAINTQSGVRIKTAVGRGAYVKEI-YVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPT 380
             +N +  +R+KT   RG Y++ I ++  + +   + V  +   Y +      + + LP 
Sbjct: 318 VYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPV 372
Query: 381 VTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIK 419
           V  +  +++ A     + +++G+ ND    I IS+  I+
Sbjct: 373 VRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIE 411
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-133
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-133
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-123
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 4e-77
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-76
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-76
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 4e-72
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 6e-70
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 5e-69
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-62
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-53
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 2e-42
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 6e-42
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 4e-36
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-33
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-25
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 3e-06
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 5e-05
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
 Score =  389 bits (1002), Expect = e-133
 Identities = 83/387 (21%), Positives = 152/387 (39%), Gaps = 43/387 (11%)

Query: 63  GGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGK---WLTGSFNLTSHFTLYIHKD 119
             +    ++ T     A++       D G  + +  G    +L+G  +L S  +L I K 
Sbjct: 16  TTLKADSSTATSTIQKALN-----NCDQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKG 70

Query: 120 ALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPW 179
             L A  +   +      PS     D+ G    + I   + T+  + G   TI+GQG   
Sbjct: 71  VTLRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIYG-PGTIDGQGGVK 126

Query: 180 W-----------IKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVL 228
                          + K+     P LI++  S N  + N++LI+SP+++V         
Sbjct: 127 LQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFT 186

Query: 229 IQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHL 288
               TI+ P  + NTDGI+P S  N  I  + I +GDD VA+K+            T+++
Sbjct: 187 AWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG------RAETRNI 240

Query: 289 IIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVR 348
            I      +     +++GSE + G+ +V  +D+    T +G+RIK+       V  +   
Sbjct: 241 SILHNDFGT--GHGMSIGSE-TMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYS 297

Query: 349 RMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPF 408
            + MK +     +   Y        +   +P  + I ++D+ ++       L+G      
Sbjct: 298 NVVMKNVAKPIVIDTVYEKK-----EGSNVPDWSDITFKDVTSETKG-VVVLNGENAKKP 351

Query: 409 TGICISNVTIKLTEKPKELQWNCTNIQ 435
             + + NV +          W   N+ 
Sbjct: 352 IEVTMKNVKLTSDST-----WQIKNVN 373
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.9
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.9
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.87
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.87
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.86
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.86
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.84
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.83
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.83
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.81
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.68
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.65
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.58
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.51
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.36
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.33
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.32
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.26
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.17
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 99.11
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.65
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.56
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.5
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.46
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.39
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.37
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.35
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.35
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.29
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.29
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.23
2x3h_A542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.23
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.22
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.16
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.15
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.11
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.01
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.98
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.96
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.91
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.82
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.71
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.65
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.51
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.46
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.39
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.36
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.29
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.25
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.64
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.51
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.18
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.3
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.67
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 94.33
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.94
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 92.73
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 92.66
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 91.86
3riq_A543 Tailspike protein; right handed beta-helix, endorh 91.76
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 87.87
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 87.03
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 86.22
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 83.33
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.6e-71  Score=573.32  Aligned_cols=353  Identities=31%  Similarity=0.575  Sum_probs=313.7

Q ss_pred             cccceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEeccceeEEEccCcEEEecCCCCC
Q 011615           51 NCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESE  130 (481)
Q Consensus        51 ~~~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l~s~~~l~l~~ga~i~~~~~~~~  130 (481)
                      ..++.++||++|||+|||++|||+|||+||++|++   .++++|+||+|+|++++|.|+|+++|+++  |+|++++++++
T Consensus        22 ~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~---~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~d~~~   96 (448)
T 3jur_A           22 QIPDREVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIPDPER   96 (448)
T ss_dssp             CCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHH---HTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECCCGGG
T ss_pred             CCCCcEEEEEecccCCCCCeecHHHHHHHHHhhhh---cCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecCCHHH
Confidence            35567999999999999999999999999998875   57899999999999999999999999987  99999999999


Q ss_pred             C-CCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCC--chhhhhcccc---------------------
Q 011615          131 W-PLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQG--EPWWIKYRKK---------------------  186 (481)
Q Consensus       131 ~-~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g--~~ww~~~~~~---------------------  186 (481)
                      | +..   ...++|.+.  ..+.+||++.+++||+|+|. |+|||+|  +.||+.....                     
T Consensus        97 y~p~~---~~~~~G~~~--~~~~~lI~~~~~~ni~ItG~-GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~  170 (448)
T 3jur_A           97 YLPVV---LTRFEGIEL--YNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEM  170 (448)
T ss_dssp             GCSCE---EEEETTEEE--EESCCSEEEESCEEEEEESS-CEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHH
T ss_pred             hCccc---ccccccccc--cCccceEEEeCcEeeEEEEe-EEEECCCCchhhhhhcccccccccccccccccchhhhhhh
Confidence            8 321   111233221  13567999999999999996 9999999  8999753210                     


Q ss_pred             -------------CCCCCCCeeEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCcc
Q 011615          187 -------------QFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTN  253 (481)
Q Consensus       187 -------------~~~~~rp~~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~n  253 (481)
                                   .....||.+|.|.+|+|++|+|++++|+|+|++++..|+|++|++++|.++  ++|+||||+.+|+|
T Consensus       171 ~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~n  248 (448)
T 3jur_A          171 AERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKY  248 (448)
T ss_dssp             HHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEE
T ss_pred             hcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcC
Confidence                         123579999999999999999999999999999999999999999999997  68999999999999


Q ss_pred             EEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCc-eEEeccCcCCCEEEEEEEeeEEEcCCceEEE
Q 011615          254 TRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSA-AIALGSEMSGGIKDVRAEDITAINTQSGVRI  332 (481)
Q Consensus       254 V~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~-gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~I  332 (481)
                      |+|+||+|.+|||||+++++++.+|.+++.|++||+|+||+|+...+| ||+|||++.++++||+|+||+|.++.+|+||
T Consensus       249 V~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirI  328 (448)
T 3jur_A          249 MLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRL  328 (448)
T ss_dssp             EEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEE
T ss_pred             EEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEE
Confidence            999999999999999999998888888899999999999999543355 9999999999999999999999999999999


Q ss_pred             EeecCCCceeecEEEEeeEEccceeeE-EEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccCeeEEEeccCCCCeeeE
Q 011615          333 KTAVGRGAYVKEIYVRRMTMKTMKYVF-WMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGI  411 (481)
Q Consensus       333 kt~~g~~g~v~nI~f~ni~~~~~~~~i-~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l~g~~~~~~~~I  411 (481)
                      |||.+++|.|+||+|+||+|+++.+|+ .|++.|+...     +...+.|+||+|+||++++...++.|.|+++.||+||
T Consensus       329 Kt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~I  403 (448)
T 3jur_A          329 KTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDI  403 (448)
T ss_dssp             ECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEEE
T ss_pred             EEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEeeE
Confidence            999998999999999999999999988 9999997541     2234799999999999998888999999999999999


Q ss_pred             EEEeEEEEec
Q 011615          412 CISNVTIKLT  421 (481)
Q Consensus       412 ~~~ni~i~~~  421 (481)
                      +|+||+++..
T Consensus       404 ~~~nv~i~~~  413 (448)
T 3jur_A          404 LISDTIIEGA  413 (448)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEEEcc
Confidence            9999999864
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 481
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 3e-72
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-56
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-54
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 8e-50
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-47
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 3e-46
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 7e-46
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 2e-41
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 9e-18
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 0.004
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score =  231 bits (589), Expect = 3e-72
 Identities = 78/384 (20%), Positives = 146/384 (38%), Gaps = 41/384 (10%)

Query: 65  VGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGK---WLTGSFNLTSHFTLYIHKDAL 121
           +    ++ T     A++       D G  + +  G    +L+G  +L S  +L I K   
Sbjct: 18  LKADSSTATSTIQKALN-----NCDQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVT 72

Query: 122 LLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGG-------NATING 174
           L A  +   +      PS     D+ G    + I   + T+  + G           +  
Sbjct: 73  LRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQD 129

Query: 175 QGEPWW---IKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQG 231
           +   WW      + K+     P LI++  S N  + N++LI+SP+++V            
Sbjct: 130 KKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWK 189

Query: 232 LTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIR 291
            TI+ P  + NTDGI+P S  N  I  + I +GDD VA+K+            T+++ I 
Sbjct: 190 TTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNISIL 243

Query: 292 RLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMT 351
                +    +I      + G+ +V  +D+    T +G+RIK+       V  +    + 
Sbjct: 244 HNDFGTGHGMSI---GSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVV 300

Query: 352 MKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIRNDPFTGI 411
           MK +     +   Y        +   +P  + I ++D+ ++       L+G        +
Sbjct: 301 MKNVAKPIVIDTVYEKK-----EGSNVPDWSDITFKDVTSETKG-VVVLNGENAKKPIEV 354

Query: 412 CISNVTIKLTEKPKELQWNCTNIQ 435
            + NV +          W   N+ 
Sbjct: 355 TMKNVKLTSDST-----WQIKNVN 373
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.83
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.79
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.79
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.79
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.77
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.76
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.68
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.66
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.42
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.8
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.44
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.25
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.14
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.89
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.76
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.63
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.6
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.55
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.52
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.44
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.36
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.21
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.09
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.76
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.67
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.78
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.11
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.97
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 92.73
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 90.87
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 90.76
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 81.88
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.1e-63  Score=512.07  Aligned_cols=338  Identities=16%  Similarity=0.248  Sum_probs=291.8

Q ss_pred             cccccceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceee-eEEeccceeEEEccCcEEEecCC
Q 011615           49 ALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTG-SFNLTSHFTLYIHKDALLLASQD  127 (481)
Q Consensus        49 ~~~~~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~-~i~l~s~~~l~l~~ga~i~~~~~  127 (481)
                      ....+..+|||+||||+|||++|||+|||+||++|.     +|++|+||+|+|++. ++.|+++..+.++.+++|++...
T Consensus        13 ~~~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~ac~-----~gg~V~iP~Gty~l~~~i~l~g~~~~~l~~~G~i~~~~~   87 (422)
T d1rmga_          13 STKGATKTCNILSYGAVADNSTDVGPAITSAWAACK-----SGGLVYIPSGNYALNTWVTLTGGSATAIQLDGIIYRTGT   87 (422)
T ss_dssp             HHHHHHCEEEGGGGTCCCSSSSBCHHHHHHHHHHHT-----BTCEEEECSSEEEECSCEEEESCEEEEEEECSEEEECCC
T ss_pred             cccCCCcEEEEecCCCCCCCCccCHHHHHHHHHhcC-----CCCEEEECCCcEEEeCcEEEcCCCceEEEEeEEEEeccC
Confidence            345567899999999999999999999999998652     578999999999654 79998877777788899987754


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCCchhhhhccccCCCCCCCeeEEEEeeccEEEE
Q 011615          128 ESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQIS  207 (481)
Q Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~  207 (481)
                      ...+                   ...+....+.+.+.+.|. |+|||+|..||..      ...+|.+++|.+|+|++|+
T Consensus        88 ~~~~-------------------~~~~~~~~~~~~~~~~g~-G~IdG~G~~~~~~------~~~~p~~l~~~~~~n~~i~  141 (422)
T d1rmga_          88 ASGN-------------------MIAVTDTTDFELFSSTSK-GAVQGFGYVYHAE------GTYGARILRLTDVTHFSVH  141 (422)
T ss_dssp             CSSE-------------------EEEEEEEEEEEEECSSSC-CEEECCTHHHHTT------TCCCCEEEEEEEEEEEEEE
T ss_pred             CccC-------------------EEEeccCccEEEEEeecc-eEEecCcceecCC------CCCCCcEEEEEeeeeeEEE
Confidence            4332                   123444555666677885 9999999999964      3468999999999999999


Q ss_pred             eeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceee
Q 011615          208 NLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQH  287 (481)
Q Consensus       208 g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~n  287 (481)
                      |++++|++.||+.+..|++++|+|++|.++. .+|+||||+.+ +||+|+||+|.++||||+++++           ++|
T Consensus       142 git~~nsp~~~i~i~~c~~v~i~nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~-----------s~n  208 (422)
T d1rmga_         142 DIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSP-----------ANN  208 (422)
T ss_dssp             EEEEECCSSCSEEEEEEEEEEEEEEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEE-----------EEE
T ss_pred             CcEecCCCceEEEEeccccEEEEeeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCC-----------Ccc
Confidence            9999999999999999999999999999864 68999999975 6899999999999999999997           999


Q ss_pred             EEEEEEEEeCCCCceEEeccCc-CCCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceeeEEEEcccC
Q 011615          288 LIIRRLICISPDSAAIALGSEM-SGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYG  366 (481)
Q Consensus       288 I~I~n~~~~~~~~~gisIGs~~-~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~i~~~y~  366 (481)
                      |+|+|++|.+  +||++|||+. ...++||+|+||++.++.+|++||++.+ .|.|+||+|+||+|+++.+||.|++.|+
T Consensus       209 I~i~n~~c~~--g~GisiGs~g~~~~V~nV~v~n~~~~~s~~g~~ik~~~g-~G~V~nI~f~Ni~~~nv~~pI~Id~~y~  285 (422)
T d1rmga_         209 ILVESIYCNW--SGGCAMGSLGADTDVTDIVYRNVYTWSSNQMYMIKSNGG-SGTVSNVLLENFIGHGNAYSLDIDGYWS  285 (422)
T ss_dssp             EEEEEEEEES--SSEEEEEEECTTEEEEEEEEEEEEEESSSCSEEEEEBBC-CEEEEEEEEEEEEEEEESCSEEEETBCT
T ss_pred             EEEEeeEEcc--ccceeEeeccCCCCEEEEEEEeEEEeCCCceEEEEEcCC-CceecceEEEEEEEecccccEEEecccC
Confidence            9999999997  7899999974 4569999999999999999999998754 5899999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCeEEeEEEEEEEEEcc----CeeEEEeccCCCCeeeEEEEeEEEEecCCCCccceEEeeeecc
Q 011615          367 SHPDPGFDPKALPTVTGINYRDMVADNV----TQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGI  437 (481)
Q Consensus       367 ~~~~~~~~~~~~~~i~nItf~nI~~~~~----~~~~~l~g~~~~~~~~I~~~ni~i~~~~~~~~~~~~c~nv~g~  437 (481)
                      .....   +...+.|+||+|+||+|+..    +.++.|.|+++.||+||+|+||+|+.. .+..+.+.|+|++|.
T Consensus       286 ~~~~~---~~~~v~isnIt~~Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~-~g~~~~~~C~na~G~  356 (422)
T d1rmga_         286 SMTAV---AGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTE-SGSSELYLCRSAYGS  356 (422)
T ss_dssp             TSCCB---SSSCCEEEEEEEEEEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEES-SSSCEEEEEESEEEE
T ss_pred             CCCCC---CCCCeEEEEEEEEeEEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcC-CCCCcceEEECceee
Confidence            65432   22346899999999999864    568999999999999999999999976 445677999999984
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure